BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] (563 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|170696757|ref|ZP_02887869.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M] gi|170138336|gb|EDT06552.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M] Length = 600 Score = 415 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 130/561 (23%), Positives = 234/561 (41%), Gaps = 25/561 (4%) Query: 9 QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 F + + L + R L + + + + + +P Y LY L D I Sbjct: 48 NFGQRLSGLAQMRGNPRAPLIFAVALLVAIVAGLFLWSRAPDYKVLYSNLSDRDGGAIIT 107 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI ++ S+ G +I VPS V + R+ LA+QGLP S S G+EL D FG++ F Sbjct: 108 ALQQANIPYKFSEAGGAILVPSEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQF 165 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 ++I RALEGE+ RTI+S+S + +ARVH+ +P F + P+ASV++ Sbjct: 166 AEQINYQRALEGELERTIESVSSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRAL 225 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 AI H+V++AVP + + VT+LD G LLT + + L Q I+ + Sbjct: 226 DEGQVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERSTQQ 285 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TS 300 I+ LA G N S V A+++ + Y P+ +++ S+ + + Sbjct: 286 RIDAILAPLFGSGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQG 345 Query: 301 QPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 N P + +D+K+ +NYE++ Sbjct: 346 GASGVPGALSNQPPQPASAPINAPAGASGGVTTTPVSDRKDMTTNYELDKTVRHLEQPMG 405 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RLS+AVVVN R+ + G + Q LA++N++V A G +++RGD++ + + Sbjct: 406 GIKRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAQRGDSVNVVNSP 465 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F N+ + + + L L + F+ + R Sbjct: 466 FTTALDPNADLP-WWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPVV 524 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 S P + N + +D+ + ++ + + +++ Sbjct: 525 AAALPSPDEPILLDGIPAAERAGNAALEMDNGDAELQALENAK------HKYERNLEFAR 578 Query: 533 HMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 579 SIARQDPKIVATVVKNWVTDE 599 >gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040372|gb|ACT57168.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 563 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 563/563 (100%), Positives = 563/563 (100%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV Sbjct: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF Sbjct: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI Sbjct: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE Sbjct: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS Sbjct: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA Sbjct: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN Sbjct: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL Sbjct: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE Sbjct: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 Query: 541 RFAKILRKWARSEIEDRYTQHIS 563 RFAKILRKWARSEIEDRYTQHIS Sbjct: 541 RFAKILRKWARSEIEDRYTQHIS 563 >gi|209522223|ref|ZP_03270859.1| flagellar M-ring protein FliF [Burkholderia sp. H160] gi|209497337|gb|EDZ97556.1| flagellar M-ring protein FliF [Burkholderia sp. H160] Length = 555 Score = 412 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 134/560 (23%), Positives = 231/560 (41%), Gaps = 27/560 (4%) Query: 9 QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 F + + L + R L I + + + + +P Y LY L D I Sbjct: 7 NFGQRLSGLAQMRGNPRAPLVFAIALLVAVVAGLFLWSRTPDYKVLYSNLSDRDGGSIIA 66 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI +++SD+G +I VP+ V + R+ LA+QGLP S S G+EL D FG++ F Sbjct: 67 ALQQANIPYKLSDSGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQF 124 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--S 183 ++I R+LEGE+ RTI+SIS + +ARVH+ +P F + P+A+V++ Sbjct: 125 NEQINYQRSLEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSAAVLVNLYPGRVL 184 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 AI H+V++AVP + + VT+LD G LLT + L Q I+ + Sbjct: 185 DEGQVVAITHMVSSAVPEMPVRGVTILDQDGNLLTQPSNGSGLDATQLKFRQQIERNTQQ 244 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TS 300 I+ LA G N RS V A+++ + Y P+ +++ S+ + + Sbjct: 245 RIDAILAPLFGPGNARSQVSADIDFSHSEQTSENYGPNGSPQQAAIRSQQSSSATEMSQG 304 Query: 301 QPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P + +D K+ +NYE++ Sbjct: 305 GASGVPGALSNQPPQPASAPIVAANGASSVATTPISDHKDSTTNYELDKTVRHVDQPMGG 364 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + RLS+AVVVN R+ + G Q L +I ++V A G ++ RGD++ + + F Sbjct: 365 IHRLSVAVVVNYLRVVDAKGHVTMQPVSADKLMQITQLVKDAMGFDASRGDSVNVVNSAF 424 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + N+ D+L+ + + V L + ALRR Sbjct: 425 TTDLDPNADLPWWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPPEPVPA 484 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + A + + +I + S L + +++ Sbjct: 485 LMSPDEPVLLDGIPAEER----------EGAIVEIETDSETLALENAKHKYERNLEFARS 534 Query: 534 MIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 535 IARQDPKIVATVVKNWVSDE 554 >gi|78067882|ref|YP_370651.1| flagellar MS-ring protein [Burkholderia sp. 383] gi|77968627|gb|ABB10007.1| Flagellar FliF M-ring protein [Burkholderia sp. 383] Length = 587 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 124/553 (22%), Positives = 222/553 (40%), Gaps = 29/553 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + L + + + A + +P Y LY L D I AL +AN+ Sbjct: 51 GISRMKGNPKLPFLIAVAFAVAVITALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 110 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ +D G +I VPS+ V + R+ LAA GLP S G+EL D FG++ F ++I Sbjct: 111 PYKFADAGGAILVPSNQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQ 168 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190 RALEGE+ RTI+SI+ + ARVH+ +P F + P+ASV + +A Sbjct: 169 RALEGELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQA 228 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 I +V++ VP++ +VT++D G LLT + L VQ ++H + I+ LA Sbjct: 229 ITRMVSSGVPDMPAKNVTIVDQDGNLLTQTASASGLDASQLKYVQQVEHNTQKRIDAILA 288 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307 G N RS V A+L+ + Y P+ ++S S+ + Sbjct: 289 PIFGTGNARSQVSADLDFSKIEQTSESYGPNGNPQQSAIRSQQTSSATELAQGGASGVPG 348 Query: 308 VEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P P++ +D+K++ +NYE++ ++RLS+A Sbjct: 349 ALSNTPPQPASAPIVAGNGQNAPQTTPVSDRKDQTTNYEVDKTIRHLEQPMGSVKRLSVA 408 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN + + G Q + LA++ ++V A G + +RGD++ + + F Sbjct: 409 VVVNYQPVADAKGHVTMQPLPPAKLAQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPY 468 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + D+++ + L A+RR + + Sbjct: 469 ADLPWWRQPDMIAMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEPVAPALAAPEDS 528 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P+ + S ++ +++ + + + Sbjct: 529 VALDGLPGPEKSEEPDALLLGFESEKNR---------------YERNLDYARTIARQDPK 573 Query: 541 RFAKILRKWARSE 553 A +++ W E Sbjct: 574 IVATVVKNWVSDE 586 >gi|91785611|ref|YP_560817.1| flagellar MS-ring protein [Burkholderia xenovorans LB400] gi|91689565|gb|ABE32765.1| Flagellar FliF M-ring protein [Burkholderia xenovorans LB400] Length = 600 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 137/557 (24%), Positives = 237/557 (42%), Gaps = 22/557 (3%) Query: 12 KSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + L + R L + + + + + +P Y LY L D I AL Sbjct: 50 QRLSGLAQMRGNPRAPLIFAVALLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITALQ 109 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI ++ SD G +I VP+ V + R+ LA+QGLP S S G+EL D FG++ F ++ Sbjct: 110 AANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQ 167 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186 I RALEGE+ RT++SIS + +ARVH+ +P F + P+ASV++ Sbjct: 168 INYQRALEGELERTVESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEG 227 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AI H+V++AVP++ + VT+LD G LLT + L Q I+ + I+ Sbjct: 228 QVLAITHMVSSAVPDMPVKGVTILDQDGNLLTQPSTGSGLDASQLKYRQQIERSTQQRID 287 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303 LA G N S V A+++ + Y P+ +++ S+ + + Sbjct: 288 AILAPLFGSGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSSATEMSQGGAS 347 Query: 304 SAVTVEQNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +D+K+ +NYE++ ++R Sbjct: 348 GVPGALSNQPPQPASAPINAPTGASGVTTTPVSDRKDSTTNYELDKTVRHLERPMGGIKR 407 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AVVVN R+ + G + Q LA++N++V A G ++ RGD++ + + F + Sbjct: 408 LSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAARGDSVNVVNSPFTTD 467 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 N+ D+++ + V L + ALRR E Sbjct: 468 LDPNADLPWWRTPDMIALARQVATYLGIGAVALFLYFVMVKPALRRAF-----PPPEPVV 522 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 L P + A SS ++ S S L + + +++ ++ Sbjct: 523 AGALPSPDEPILLDGIPAAERAGAGGSSVAELESDSELLALENSKHKYERNLEFARNIAR 582 Query: 537 INEERFAKILRKWARSE 553 + + A +++ W E Sbjct: 583 QDPKIVATVVKNWVSDE 599 >gi|323527692|ref|YP_004229845.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001] gi|323384694|gb|ADX56785.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001] Length = 600 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 132/558 (23%), Positives = 234/558 (41%), Gaps = 25/558 (4%) Query: 12 KSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + L + R L + V + + + +P Y LY L D I AL Sbjct: 51 QRLSGLAQMRGNPRAPLIFAVAVLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITALQ 110 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +ANI ++ SD G +I VP+ V + R+ LA+QGLP S S G+EL D FG++ F ++ Sbjct: 111 QANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQ 168 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186 I RALEGE+ RTI+SIS + +ARVH+ +P F + P+ASV++ Sbjct: 169 INYQRALEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLFPGRALDEG 228 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AI H+V++AVP + + VT+LD G LLT + L Q I+ + I+ Sbjct: 229 QVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSTGGGLDASQLKYRQQIERNTQQRID 288 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303 LA G N S V A+++ + Y P+ +++ S+ + + Sbjct: 289 AILAPLFGAGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQGGAS 348 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINTKSIATTHDNYKLE 355 N P + ++ +K+ +NYE++ + Sbjct: 349 GVPGALSNQPPQPASAPINAPNGASSSVTTTPVSDRKDMTTNYELDKTVRHLEQPMGGIR 408 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS+AVVVN R+ + G + Q LA++N++V A G +++RGD++ + + F Sbjct: 409 RLSVAVVVNYLRVVDGKGHATMQPVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTA 468 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 N+ + + + L L + F+ + R Sbjct: 469 ELDPNADLP-WWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPVVAAA 527 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 S P + N N+ +D+S+ ++ + + +++ ++ Sbjct: 528 LPSPDEPILLDGIPAAERAGNGNVEIDNSDSELLALENAK------HKYERNLEFARNIA 581 Query: 536 EINEERFAKILRKWARSE 553 + + A +++ W E Sbjct: 582 RQDPKIVATVVKNWVTDE 599 >gi|296157432|ref|ZP_06840267.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1] gi|295892204|gb|EFG71987.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1] Length = 600 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 134/560 (23%), Positives = 234/560 (41%), Gaps = 22/560 (3%) Query: 9 QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 F + + L + R L + + + + + + +P Y LY L D I Sbjct: 47 NFGQRLSGLAQMRGNPRAPLIFAVALLVAVVVGLFLWSRAPDYKVLYSNLSDRDGGAIIT 106 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL ANI ++ SD G +I VP+ V + R+ LA+QGLP S S G+EL D FG++ F Sbjct: 107 ALQAANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQF 164 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 ++I RALEGE+ RT++SIS + +ARVH+ +P F + P+ASV++ Sbjct: 165 AEQINYQRALEGELERTVESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRAL 224 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 AI H+V++AVP++ + VT+LD G LLT + L Q I+ + Sbjct: 225 DEGQVLAITHMVSSAVPDMPVKGVTILDQDGNLLTQPSTGNGLDASQLKYRQQIERSTQQ 284 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TS 300 I+ LA G N S V A+++ + Y P+ +++ S+ + + Sbjct: 285 RIDAILAPLFGSGNAHSQVSADIDFSHSEQTSENYGPNGNPQQAAIRSQQSSSATEMSQG 344 Query: 301 QPESAVTVEQNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P + + +D+K+ +NYE++ Sbjct: 345 AASGVPGALSNQPPQPASAPINAPTGASGVTTTPVSDRKDSTTNYELDKTVRHLERPMGG 404 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN R+ + G + Q LA++N++V A G + RGD++ + + F Sbjct: 405 IKRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDQARGDSVNVVNSAF 464 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + N+ + + L L + F+ + R Sbjct: 465 STDLDPNADLP-WWRTPDMIALAKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPPVA 523 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 S P + A SS ++ S S L + + +++ + Sbjct: 524 GALPSPDEPIL----LDGIPAAERVGAGGSSVAELESDSELLALENSKHKYERNLEFARN 579 Query: 534 MIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 580 IARQDPKIVATVVKNWVSDE 599 >gi|187925740|ref|YP_001897382.1| flagellar MS-ring protein [Burkholderia phytofirmans PsJN] gi|187716934|gb|ACD18158.1| flagellar M-ring protein FliF [Burkholderia phytofirmans PsJN] Length = 603 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 134/559 (23%), Positives = 231/559 (41%), Gaps = 20/559 (3%) Query: 10 FFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 F + + L + R L + + + + + +P Y LY L D I A Sbjct: 49 FGQRLSGLAQMRGNPRAPLIFAVALLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITA 108 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L ANI ++ SD G +I VP+ V + R+ LA+QGLP S S G+EL D FG++ F Sbjct: 109 LQAANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFA 166 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 ++I RALEGE+ RTI+SIS + +ARVH+ +P F + P+ASV++ Sbjct: 167 EQINYQRALEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALD 226 Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 AI H+V++AVP++ + VT+LD G LLT + L Q I+ + Sbjct: 227 EGQVLAITHMVSSAVPDMPVKGVTILDQDGNLLTQLSTGSGLDASQLKYRQQIERSTQQR 286 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQ 301 I+ LA G N S V A+++ + Y P+ +++ S+ + + Sbjct: 287 IDAILAPLFGSGNAHSQVSADIDFSHSEQTSENYGPNGNPQQAAIRSQQSSSATEMSQGA 346 Query: 302 PESAVTVEQNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P + + +D+K+ +NYE++ + Sbjct: 347 ASGVPGALSNQPPQPASAPINAPNGASGVTTTPVSDRKDSTTNYELDKTVRHLERPMGGI 406 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS+AVVVN R+ + G + Q LA++N++V A G + RGD++ + + F Sbjct: 407 KRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDQARGDSVNVVNSPFS 466 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 N+ D+++ + V L + ALRR + Sbjct: 467 TEVDPNADLPWWRTPDMIALAKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPAAVAA 526 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + N + S ++ S L + +++ + Sbjct: 527 LASPDEPILLDGIPAAERMGANGTSS---SVAELEGDSELLALESAKHKYERNLEFARSI 583 Query: 535 IEINEERFAKILRKWARSE 553 + + A +++ W E Sbjct: 584 ARQDPKIVATVVKNWVSDE 602 >gi|302878299|ref|YP_003846863.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2] gi|302581088|gb|ADL55099.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2] Length = 566 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 124/561 (22%), Positives = 226/561 (40%), Gaps = 26/561 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F L + + L I I L + A + +P Y LY L D I +L + Sbjct: 15 FSRFEQLSAQQKMGLGVGIAALIALIVGAWMWGQTPDYRILYSNLSDRDGGAIIESLQQL 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI ++ +D G ++ +P+ V +AR+ LA+QGLP G+EL + FG+T F +++ Sbjct: 75 NIPYKFADGGGALMIPADQVHEARLKLASQGLPK-GGTVGFELM-ENQKFGITQFAEQVN 132 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188 RALEGE+AR++QSI + +ARVH+ +P F K +P+ASV++ Sbjct: 133 YQRALEGELARSVQSIGAVASARVHLAIPKPSVFIKEQQKPSASVVLTLHGGRLLDSAQV 192 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNIN 246 AI HL++++VP++ +VT++D G LL++ + + L VQ I+ I Sbjct: 193 TAIVHLISSSVPDMSAKNVTIVDQDGSLLSSLQDSNGLGLDANQLKYVQQIEQNYIKRIE 252 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSETSQPE 303 L LG +N + V A ++ + Y P+ S S Sbjct: 253 DILTPLLGANNVHAQVTANIDFARTEQTAETYKPNQNPADSSVRSLQNSETLNGSGLNAS 312 Query: 304 SAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P V P + KE NYE++ T Sbjct: 313 GVPGALSNQPPVPATAPIVSAPPGATDPANAPKIDNLHKENTINYEVDRTISHTILPVGM 372 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN + T+ G+ + + D+ A+I+ +V A G + RGD++ I + F Sbjct: 373 IKRLSVAVVVNNRKATDPKGKVSSKPLTDAEKAQIDNLVKDAVGFDKNRGDSLNIQNAAF 432 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + S + +L+ ++ + ++ + E Sbjct: 433 NDEKEALSELP----WWKQADIIELAKLLAKYLIIAAVMLIVVFKIIKPAFRPLEPFHAE 488 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + ++ + G IA ++ + + +++ Sbjct: 489 TDDEEHVATVDHTPGEGEGEGE---IATGAAGTQHANEPGSEHYTPPVEPYEKNLNIARQ 545 Query: 534 MIEINEERFAKILRKWARSEI 554 + + + + A +++ W Sbjct: 546 ITQQDPKIVASVIKDWVNGNE 566 >gi|307731342|ref|YP_003908566.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003] gi|307585877|gb|ADN59275.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003] Length = 600 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 131/558 (23%), Positives = 234/558 (41%), Gaps = 25/558 (4%) Query: 12 KSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + L + R L + V + + + +P Y LY L D I AL Sbjct: 51 QRLSGLAQMRGNPRAPLIFAVAVLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITALQ 110 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +ANI ++ SD G +I VP+ V + R+ LA+ GLP S S G+EL D FG++ F ++ Sbjct: 111 QANIPYKFSDAGGAILVPAEQVHEMRLRLASLGLPKSGS-VGFELMDN-QKFGISQFAEQ 168 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186 I RALEGE+ RTIQSIS + +ARVH+ +P F + P+ASV++ Sbjct: 169 INYQRALEGELERTIQSISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEG 228 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AI H+V++AVP + + VT+LD G LLT + + L Q I+ + I+ Sbjct: 229 QVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERNTQQRID 288 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303 LA G N S V A+++ + Y P+ +++ S+ + + Sbjct: 289 AILAPLFGAGNAHSQVSADIDFSRSEQTSEAYGPNGNPQQAAIRSQQSSTATEMSQGGAS 348 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINTKSIATTHDNYKLE 355 N P + ++ +K+ +NYE++ ++ Sbjct: 349 GVPGALSNQPPQPASAPINAPNGASSSVTTTPVSDRKDMTTNYELDKTVRHLEQPMGGIK 408 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS+AVVVN R+ + GR+ Q LA++N++V A G +++RGD++ + + F Sbjct: 409 RLSVAVVVNYLRVVDGKGRATMQPVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTA 468 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 N+ + + + L L + F+ + R Sbjct: 469 ELDPNADLP-WWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPVVAAA 527 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 S P + N ++ +D+ + ++ + + +++ + Sbjct: 528 LPSPDEPILLDGIPAAERAANASVEIDTGDAELLALENAK------HKYERNLEFARSIA 581 Query: 536 EINEERFAKILRKWARSE 553 + + A +++ W E Sbjct: 582 RQDPKIVATVVKNWVTDE 599 >gi|254239470|ref|ZP_04932792.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 2192] gi|126192848|gb|EAZ56911.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 2192] Length = 598 Score = 398 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 119/585 (20%), Positives = 243/585 (41%), Gaps = 51/585 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + SN G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDSNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + +++ + P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V + G ++ RGD++++ + F Q ++ F ++ ++ ++ Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L++ F L + K GG + + G + +D +++ + + Sbjct: 502 LVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILL 561 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + +++ + R A+++++W ++ Sbjct: 562 PSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 598 >gi|218892935|ref|YP_002441804.1| flagellar MS-ring protein [Pseudomonas aeruginosa LESB58] gi|218773163|emb|CAW28975.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa LESB58] Length = 598 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 118/585 (20%), Positives = 243/585 (41%), Gaps = 51/585 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + +++ + P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V + G ++ RGD++++ + F Q ++ F ++ ++ ++ Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPVQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L++ F L + K GG + + G + +D +++ + + Sbjct: 502 LVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILL 561 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + +++ + R A+++++W ++ Sbjct: 562 PSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 598 >gi|15596298|ref|NP_249792.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAO1] gi|107100552|ref|ZP_01364470.1| hypothetical protein PaerPA_01001577 [Pseudomonas aeruginosa PACS2] gi|116049030|ref|YP_792168.1| flagellar MS-ring protein [Pseudomonas aeruginosa UCBPP-PA14] gi|296390533|ref|ZP_06880008.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAb1] gi|12230924|sp|Q51463|FLIF_PSEAE RecName: Full=Flagellar M-ring protein gi|9947018|gb|AAG04490.1|AE004540_10 Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa PAO1] gi|115584251|gb|ABJ10266.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa UCBPP-PA14] Length = 598 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 118/585 (20%), Positives = 243/585 (41%), Gaps = 51/585 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + +++ + P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V + G ++ RGD++++ + F Q ++ F ++ ++ ++ Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L++ F L + K GG + + G + +D +++ + + Sbjct: 502 LVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILL 561 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + +++ + R A+++++W ++ Sbjct: 562 PSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 598 >gi|170700811|ref|ZP_02891802.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10] gi|170134298|gb|EDT02635.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10] Length = 587 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 120/528 (22%), Positives = 214/528 (40%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVEGNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ + N P +S Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A+I ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A P+ + + Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDPLLLGFENE 553 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ +++ + + + A +++ W E Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|238028887|ref|YP_002913118.1| flagellar MS-ring protein [Burkholderia glumae BGR1] gi|237878081|gb|ACR30414.1| Flagellar M-ring protein FliF [Burkholderia glumae BGR1] Length = 599 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 123/524 (23%), Positives = 214/524 (40%), Gaps = 21/524 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +ANI ++ +D G +I VP+S V + R+ LAA G Sbjct: 84 WSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMG 143 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI SI+ + +ARVH+ +P Sbjct: 144 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKP 201 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + AI +VA+ VP++ +VT++D G LL+ Sbjct: 202 SVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 261 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ ++H + I+ LA G N RS V A+++ + Y Sbjct: 262 QPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESYA 321 Query: 280 PDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV-------PLPRSLENT 329 P+ +++ S+ S S N P + Sbjct: 322 PNGTQQQAAIRSQQTSSSVESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPIS 381 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 D+K+ +NYE++ T ++RLS+AVVVN + + G Q L ++ Sbjct: 382 DRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADKLKQVE 441 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V A G +++RGD++ + + F + + L Sbjct: 442 QLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLP-WWRQPDMIALAKDAAKWLGIAAAA 500 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 + F+ + R + P A+ P+ +A DS + Sbjct: 501 AALYFMFVRPAMRRAFPPPEAAVANPALAAALGSPDEPALDGLPAPDSVVAEDSPEAALL 560 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + +++ + + + A +++ W E Sbjct: 561 AFEADK------HRYERNLDYAKMIARQDPKIVAAVVKNWVSDE 598 >gi|75674797|ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winogradskyi Nb-255] gi|74419667|gb|ABA03866.1| flagellar FliF M-ring protein [Nitrobacter winogradskyi Nb-255] Length = 541 Score = 395 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 141/549 (25%), Positives = 244/549 (44%), Gaps = 13/549 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG +R++ + +V V I F V +P L+ L V D + I Sbjct: 1 MQGLLAFLKGLGASRLMAMVAVTAVLIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I R+RALEGE+ARTI++I + ARVH+V+P+ F + +P+AS+++R + Sbjct: 120 QNINRLRALEGELARTIRAIDRVQDARVHLVLPERPLFTREAPQPSASIVLRVRGGLEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AIRHLVA+AV L V+++D TG+LL A + + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGVSGDERRAAFEKRMRSQVE 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 +++ +G R + A+ + + +DP+ +V RS + ++ S T+ V Sbjct: 240 AIVSSVVGNGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SSLTADNNGQV 297 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV +P P + + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 298 TVNNELPGNQPSDNPN-TARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGA 356 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G+ + + L I +V +A G + +RGD + + ++ F E + Sbjct: 357 YARNDKGQMVYEERSQEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPVVVPLAEPT 416 Query: 427 SFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 ++ ++ V V + L+VTF+ + L + + + L P Sbjct: 417 GWLGMMTLTKDDVMYVFELGVMALLGLVVTFMVIRPLVQRILAAEPATPSAQPAAALPVP 476 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 +SA T N + +++ V QS R+ + E N A Sbjct: 477 ADASAQPTETGQNL------IPGSNATAQLIDVAQVQGQVHAQSVHRVGELAERNPAETA 530 Query: 544 KILRKWARS 552 I+R+W Sbjct: 531 SIIRQWLAE 539 >gi|172062015|ref|YP_001809667.1| flagellar MS-ring protein [Burkholderia ambifaria MC40-6] gi|171994532|gb|ACB65451.1| flagellar M-ring protein FliF [Burkholderia ambifaria MC40-6] Length = 587 Score = 395 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 120/528 (22%), Positives = 215/528 (40%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ + N P +S Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A P+ + + Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDPLLLGFENE 553 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ +++ + + + A +++ W E Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|107023995|ref|YP_622322.1| flagellar MS-ring protein [Burkholderia cenocepacia AU 1054] gi|116691082|ref|YP_836705.1| flagellar MS-ring protein [Burkholderia cenocepacia HI2424] gi|170734416|ref|YP_001766363.1| flagellar MS-ring protein [Burkholderia cenocepacia MC0-3] gi|105894184|gb|ABF77349.1| flagellar M-ring protein FliF [Burkholderia cenocepacia AU 1054] gi|116649171|gb|ABK09812.1| flagellar M-ring protein FliF [Burkholderia cenocepacia HI2424] gi|169817658|gb|ACA92241.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] Length = 587 Score = 395 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 125/528 (23%), Positives = 217/528 (41%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ + N P P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G +++RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDAKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L N Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLLGFEN 552 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +++ + + + A +++ W E Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|254246925|ref|ZP_04940246.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia cenocepacia PC184] gi|124871701|gb|EAY63417.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia cenocepacia PC184] Length = 587 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 125/528 (23%), Positives = 216/528 (40%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ + N P P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTASDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L N Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLLGFEN 552 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +++ + + + A +++ W E Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|115353160|ref|YP_774999.1| flagellar MS-ring protein [Burkholderia ambifaria AMMD] gi|115283148|gb|ABI88665.1| flagellar M-ring protein FliF [Burkholderia ambifaria AMMD] Length = 587 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 119/528 (22%), Positives = 214/528 (40%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ + N P +S Sbjct: 314 ESYSPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A P+ + + Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDRADEPDPLLLGFENE 553 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ +++ + + + A +++ W E Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|206558926|ref|YP_002229686.1| flagellar MS-ring protein [Burkholderia cenocepacia J2315] gi|198034963|emb|CAR50835.1| flagellar M-ring protein FliF [Burkholderia cenocepacia J2315] Length = 587 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 125/528 (23%), Positives = 217/528 (41%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ + N P P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNAPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L N Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLLGFEN 552 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +++ + + + A +++ W E Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|134297240|ref|YP_001120975.1| flagellar MS-ring protein [Burkholderia vietnamiensis G4] gi|134140397|gb|ABO56140.1| flagellar M-ring protein FliF [Burkholderia vietnamiensis G4] Length = 587 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 121/527 (22%), Positives = 210/527 (39%), Gaps = 29/527 (5%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LA Sbjct: 77 LVLWSRTPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLA 136 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ + Sbjct: 137 AMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAI 194 Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV I +AI +V++ VP++ +VT++D G L Sbjct: 195 PKPSVFVRDKEAPSASVFIDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNL 254 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 LT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 255 LTQPASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSE 314 Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSL 326 Y P+ +++ S+ + N P P+S Sbjct: 315 SYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQSGPQST 374 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA Sbjct: 375 PVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLA 434 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I ++V A G + +RGD++ + + F + D++ + Sbjct: 435 QIEQLVKDAMGYDEKRGDSVNVVNSAFSTANDPYADLPWWRQPDMIEMAKEAAKWLGIAA 494 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 L A+RR + + L + Sbjct: 495 AAAALYFMFVRPAMRRAFPPPEPPAPALAAPEGTVVLD---------------GLPAPEA 539 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 L +++ + + + A +++ W E Sbjct: 540 AAEPDPMLLGFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|288960029|ref|YP_003450369.1| flagellar M-ring protein [Azospirillum sp. B510] gi|288912337|dbj|BAI73825.1| flagellar M-ring protein [Azospirillum sp. B510] Length = 553 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 156/554 (28%), Positives = 272/554 (49%), Gaps = 9/554 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + ++ +LG R+ + V L+ I F+ +++P + LY +L+ ++ I+ Sbjct: 1 MNNLLQTLRNLGPARLAAIGGVGLLLIGFFVYLTTRLSTPEMELLYAELQPTEAAAIAKK 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L EA + F + +G+ I VP+ VG R+ +AAQGLP S + GYELFDK FG TSFM Sbjct: 61 LEEAKVPFSVDKSGTKIMVPADQVGPMRMRMAAQGLP-SGGSVGYELFDKGEGFGATSFM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184 Q I +RALEGE+ART+Q+++G+ ARVH+V+P F + TASV ++ Sbjct: 120 QNINHLRALEGEMARTVQTLNGVQQARVHLVLPKRELFARQQNPATASVFLKLRPGAQLS 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEI 241 ++ +AI+ L+AA+VPNLD ++++D GKLL T ++ ++ + QA + + Sbjct: 180 RENIQAIQQLIAASVPNLDPNRISIVDDKGKLLARGTGSDTAEAMMASAEEKKQAYEGRL 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG R+ V A+L+ D + ++DPDS+V RS + ++ S Sbjct: 240 ARTIEDLLGRTLGYGKVRAEVSADLDFDRITTQSEIFDPDSQVVRSTQTVNESNESSDRD 299 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P + VTV+QN+P P S +++ EE NYEI + + ++ ++ RLS+AV Sbjct: 300 PLAPVTVDQNLPTAQSSSSASPLSSNKSNRAEETINYEITKTTKSHVRESGQVRRLSVAV 359 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ A Q + D + I +V +A G+++ RGD++ + +M F + Sbjct: 360 LVDGTYQLSKDAPPAYQPRSDQEIESIKALVRSAVGLDAVRGDSLEVINMRFWSPEDDIQ 419 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 ++ FM + + +V + +L+ L + L + E +L+ Sbjct: 420 KPDEL-FMGMTKDDLFRIAEMVVLGIVAVLIILLVIRPLIARAFEKAEMQEEDEMDRLLT 478 Query: 482 PPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 A ++AL+++ D +R+ V S ++ +++ + Sbjct: 479 DQAGMPAALAAPTGALAQDLALEAAQADEELEQMIDINRVEGRVRASSLRKVGEIVDKHP 538 Query: 540 ERFAKILRKWARSE 553 E ILR W E Sbjct: 539 EEAVSILRNWLYQE 552 >gi|92116309|ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburgensis X14] gi|91799203|gb|ABE61578.1| flagellar M-ring protein FliF [Nitrobacter hamburgensis X14] Length = 540 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 141/549 (25%), Positives = 238/549 (43%), Gaps = 14/549 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG +R++ + +V I F V +P L+ L V D + I Sbjct: 1 MQGLLAFLKGLGPSRLMAMVAVTTALIGFFAFVIMRVTAPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I + + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I R+RALEGE++RTI++I I ARVH+V+PD F + +P+AS+++R + Sbjct: 120 QNINRLRALEGELSRTIKAIDRIQDARVHLVLPDRPLFSREAPQPSASIVLRVRGGLEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AIRHLVA+AV L V+++D TG+LL A + + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGTTGDERRTAFEKRMRNQVE 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 +++ +G R + A+ + + +DP+ +V RS + ++ S T+ V Sbjct: 240 AIVSSVVGSGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SSVTADNNGQV 297 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV +P P P + + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 298 TVNNELPGNQQSDNPSP-ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGT 356 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G+ + L I +V +A G + +RGD + + ++ F E Sbjct: 357 YTKNDQGQMVYAERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPAAVPLAEPA 416 Query: 427 ---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 M + VI+ V L+ L+VTF+ + L R + P Sbjct: 417 GLLGMMALTKDDVMYVIDLAVMLLLGLVVTFMVIRPLVRRILASEPAPAGAA-------P 469 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 A + + +++ V QS R+ + E N A Sbjct: 470 SQLPAPADATAQAGATGQNLVPGGSATAQLIDVAQVQGQVHAQSVHRVGELAERNPAETA 529 Query: 544 KILRKWARS 552 I+R+W Sbjct: 530 SIIRQWLAE 538 >gi|152984140|ref|YP_001349624.1| flagellar MS-ring protein [Pseudomonas aeruginosa PA7] gi|150959298|gb|ABR81323.1| flagellar M-ring protein FliF [Pseudomonas aeruginosa PA7] Length = 597 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 120/585 (20%), Positives = 244/585 (41%), Gaps = 52/585 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNIGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + GK + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + +Y+PD RS + + + +++ + P+ Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPATAPQQATAGAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V + G ++ RGD++++ + F Q ++ F ++ ++ ++ Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L++ F L + + K G S + L + S+ + Sbjct: 502 LVLVFGVLRPVLSNISGGGKGKALADGGRDGDLALGDSGLEGSLADDRVSIGGPSSILLP 561 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + +++N + +++ + R A+++++W ++ Sbjct: 562 SPTEGYDAQLN---------AIKNLVAQDPGRVAQVVKEWINADE 597 >gi|254251157|ref|ZP_04944475.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] gi|124893766|gb|EAY67646.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] Length = 588 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 127/528 (24%), Positives = 218/528 (41%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPSS V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSSQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ S S N P P++ Sbjct: 314 ESYAPNGTPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A+I ++V A G + +RGD++ + + F + DI++ + Sbjct: 434 AQIEQLVKDAMGYDQKRGDSVNVVNSAFSTATDPYADLPWWRQPDIIAIAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + + A + D + L N Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDVVALDGLPAPASADDEPDTLLLGFEN 553 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +++ + + + A +++ W E Sbjct: 554 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 587 >gi|295678025|ref|YP_003606549.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002] gi|295437868|gb|ADG17038.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002] Length = 598 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 130/526 (24%), Positives = 223/526 (42%), Gaps = 24/526 (4%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY L D I AL +ANI +++S++G+++ VP+ V + R+ LA+ Sbjct: 84 FLWSRAPSYKVLYSNLSDRDGGSIITALQQANIPYKLSESGTAVLVPAEQVHETRLRLAS 143 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S S G+EL D FG++ F +++ RALEGE+ RTI SIS + +ARVH+ +P Sbjct: 144 QGLPKSGS-VGFELMDN-QKFGISQFDEQVNYQRALEGELERTIGSISSVKSARVHLAIP 201 Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + P+ASV++ AI H+VA+AVP + + VT+LD G LL Sbjct: 202 KPSVFVRDKEPPSASVLVNLYPGRVLDEGQVVAITHMVASAVPQMPVRGVTILDQDGNLL 261 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T + L Q I+ + I+ LA G N RS V A+++ + Sbjct: 262 TQPTNGSGLDATQLKFRQQIERNTQQRIDTILAPLFGAGNARSQVSADIDFSHSEQTSEK 321 Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLPRSLEN------ 328 Y P++ + + S+ + N P + + + Sbjct: 322 YGPNANPQDAAIRSQQTSSATEMSQGGASGVPGALSNQPPQPASAPIVAGNGASSVSTTP 381 Query: 329 -TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 +D K+ +NYE++ + RL++AVVVN R+ + G Q LA+ Sbjct: 382 ISDHKDSTTNYELDKTVRHIDQPMGGIRRLTVAVVVNYMRVVDPKGHVTMQPVSADKLAQ 441 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I ++V A G ++ RGD++ + + F + N+ D+L+ + + V Sbjct: 442 ITQLVKDAMGYDASRGDSVNVVNSAFTTDLDPNADLPWWRTPDMLALYKQIATYLGIGAV 501 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 L + ALRR + A D + + Sbjct: 502 ALFLYFVMVKPALRRAFPPPPEPVPALMSPDEPVLLDGIPADER----------DGAVVE 551 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 I + S L + +++ ++ + + A +++ W E Sbjct: 552 IEADSEKLALENAKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 597 >gi|89094455|ref|ZP_01167395.1| flagellar M-ring protein [Oceanospirillum sp. MED92] gi|89081347|gb|EAR60579.1| flagellar M-ring protein [Oceanospirillum sp. MED92] Length = 554 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 120/555 (21%), Positives = 235/555 (42%), Gaps = 28/555 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 L R + L + + + A + P L+ L SD N+I L N+ Sbjct: 15 GFNKLSIVRQIGLMVGLAASVAIGFAVVLWSQKPEQRVLFSNLTFSDANQIIEQLRLYNV 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 + +G +I VP V +AR+ LAA+G +S G+E+ D+ S G + FM+ Sbjct: 75 PYTFDADGRAILVPDEHVHQARLKLAAEGF-TSDKTVGFEILDREQSLGTSQFMETTKYR 133 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190 R LEGE+ARTI S++ + ARVH+ +P F + +PTASV + + Sbjct: 134 RGLEGELARTISSMTSVRNARVHLAIPKDTVFIRDTRKPTASVFLELFSGRKLERDQVAS 193 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKA 248 I +LVA+++P LD+ DVTV+D G+LL + + + + K L ++I+ + +N Sbjct: 194 IANLVASSIPALDVKDVTVVDQRGRLLNMRDKDVDVVLAAKQLEYTRSIEDTLLNRVNSI 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +G+ FR+ V A+++ + + + +Y+PD RS + +++ P Sbjct: 254 LQPVVGMGRFRAEVSADVDFTSVEQTDELYNPDLPALRSEQTMDESRVG-NGAPVGIPGA 312 Query: 309 EQNMPHVSDRKVPL--------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P + +K+ N+E++ T H ++ RL++A Sbjct: 313 LSNQPPGQSSVPEQASGEGVIAGNGQPGSSRKQATRNFELDRTISYTKHQQGRVRRLTVA 372 Query: 361 VVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VVV+ + G ++ + L + +V A G ++ RGD++ + + F + Sbjct: 373 VVVDDLASVNAETGETSRTPWDQNELERLRILVQDAVGFSTLRGDSVNVVNTPFAAEEPI 432 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + + + V+ ++ + L++ F L + R G + Sbjct: 433 VTEEIPLWKQE----WVMDVMKQVMAAIFVLVLVFGILRPILRNLAAAGTAGNVAGLGAA 488 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + G D++ S + + + + + ++N + M+ + Sbjct: 489 GEVSAELEGLEGGDFSADSVTFGSDDGLLPTPNESFDYQLN---------AIRSMVAEDP 539 Query: 540 ERFAKILRKWARSEI 554 R A+ +++W + Sbjct: 540 ARVAQAVKQWVGDDE 554 >gi|209964124|ref|YP_002297039.1| flagellar MS-ring protein [Rhodospirillum centenum SW] gi|209957590|gb|ACI98226.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] Length = 556 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 150/550 (27%), Positives = 252/550 (45%), Gaps = 7/550 (1%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ +LG R+ + LV + LF+ +SP LY L +D I L Sbjct: 8 SFLQTLRNLGAVRLAAIGGATLVIVGLFVYMMSQWSSPGMSLLYSDLTPADGGAIVQQLE 67 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + I ++ S +G+ I VPS VG+ R+ +A QGLP S N GYELF++ G TSFMQ Sbjct: 68 QQQIPYKASPDGTRIEVPSDQVGRVRMLMAQQGLP-SGGNVGYELFNQPEGLGTTSFMQN 126 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186 I ++RALEGE++RT+Q++ + AAR+H+V+P F + TASV +R + + Sbjct: 127 IQQLRALEGELSRTVQTLQPVQAARIHLVLPKRELFSRQNQTATASVFVRLRPGASLGKE 186 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243 AI+ LVAAAVP L+ V ++D G +L ++ + +L + A + + Sbjct: 187 QVLAIQTLVAAAVPQLEPDMVAIVDDKGNVLARGMGSDSQEAMLATAEEKKLAYEQRLTQ 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L+ +G R+ V AEL+ D +YDPDS+V RS + + + Sbjct: 247 TVEDLLSRTVGFGRVRAQVSAELDFDRITTNSEIYDPDSQVVRSTQTVNEQSEDQNRDGI 306 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV N+P S T + EE NYEIN + ++ RLS+AV+V Sbjct: 307 DPVTVANNLPTADATNTASGLSSSKTSRAEESINYEINRTVKVHERETGQIRRLSVAVLV 366 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G S Q + ++ L ++ ++V +A G ++ RGDT+ + +M F +G Sbjct: 367 DGTYAAAEDGTSTYQPRPEAELDQLRRLVESAIGFDAARGDTVEVVNMRF-ATPDDLAGL 425 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + + + +V + +LV L + L + + Sbjct: 426 GEETIFGLPKEDVFRIAQTIVLAIVAILVILLVIKPLVARALDRTPQLEDEPDLLAGGDG 485 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 A G +AL+++ + +R++ V S ++ ++E + E Sbjct: 486 VPQLAGPGGGALARELALEAAQANEELEQMIDINRVDGRVRASSLRKVGEIVEKHPEEAV 545 Query: 544 KILRKWARSE 553 I+R W E Sbjct: 546 SIIRNWLYQE 555 >gi|171321708|ref|ZP_02910625.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] gi|171093009|gb|EDT38241.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] Length = 587 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 120/528 (22%), Positives = 214/528 (40%), Gaps = 29/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 76 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313 Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325 Y P+ +++ S+ + N P +S Sbjct: 314 ESYAPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ ++RLS+AVVVN + + G Q L Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A+I ++V A G + +RGD++ + + F + D+++ + Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A P+ + + Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPDDPVALDGLPAPERADEPDPLLLGFENE 553 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ +++ + + + A +++ W E Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|161526230|ref|YP_001581242.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616] gi|189349056|ref|YP_001944684.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616] gi|160343659|gb|ABX16745.1| flagellar M-ring protein FliF [Burkholderia multivorans ATCC 17616] gi|189333078|dbj|BAG42148.1| flagellar M-ring protein [Burkholderia multivorans ATCC 17616] Length = 587 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 121/525 (23%), Positives = 216/525 (41%), Gaps = 29/525 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLEN 328 P+ +++ S+ S S N P P++ Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA+I Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F N+ D+++ + Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR + + L + + Sbjct: 497 AALYFMFVRPAMRRAFPPPEPAAPALALPGEPVVLD---------------GLPAPEPED 541 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S L +++ + + + A +++ W E Sbjct: 542 ESDPALLAFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|221215779|ref|ZP_03588738.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1] gi|221164315|gb|EED96802.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1] Length = 587 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 121/525 (23%), Positives = 217/525 (41%), Gaps = 29/525 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLEN 328 P+ +++ S+ S S N P P++ Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA+I Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F N+ D+++ + Sbjct: 437 EQLVKDAMGYDAKRGDSVNVVNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR + + L + + Sbjct: 497 AALYFMFVRPAMRRAFPPPEPPAPALALPGEPVVLD---------------GLPAPEPED 541 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + L +++ + + + A +++ W E Sbjct: 542 ESDTALLAFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|221201939|ref|ZP_03574976.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M] gi|221207554|ref|ZP_03580562.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2] gi|221172400|gb|EEE04839.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2] gi|221178359|gb|EEE10769.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M] Length = 587 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 121/525 (23%), Positives = 217/525 (41%), Gaps = 29/525 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA Sbjct: 79 LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196 Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + +AI +V++ VP++ +VT++D G LLT Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316 Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLEN 328 P+ +++ S+ S S N P P++ Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K++ +NYE++ ++RLS+AVVVN + + G Q + LA+I Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD++ + + F N+ D+++ + Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L A+RR + + L + + Sbjct: 497 AALYFMFVRPAMRRAFPPPEPPAPALALPGEPVVLD---------------GLPAPEPEN 541 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + L +++ + + + A +++ W E Sbjct: 542 ESDTALLAFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|146282929|ref|YP_001173082.1| flagellar MS-ring protein [Pseudomonas stutzeri A1501] gi|145571134|gb|ABP80240.1| flagellar M-ring protein [Pseudomonas stutzeri A1501] Length = 585 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 116/585 (19%), Positives = 235/585 (40%), Gaps = 52/585 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y L L D N++ L Sbjct: 15 LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 74 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V ++ + +AR+ LA G+ + SN G+E+ DK G + FM+ Sbjct: 75 AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 134 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 R LEGE+ RTI S++ + ARVH+ +P F + +P+ASV++ Sbjct: 135 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 194 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L+ +TV+D G LL+ + E ++ GK + ++ Sbjct: 195 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 254 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + ++PD RS + + ++S + P+ Sbjct: 255 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 313 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P Sbjct: 314 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 373 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 +++ NYE++ T + +L RLS+AVVV+ G LA Sbjct: 374 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 433 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V A G ++ RGD++++ + F+ + + F V+ ++ ++ Sbjct: 434 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIP---FYSQPWFWDVVKQVLGVLFI 490 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L++ F L + + +A G+ + + G + ND ++L + Sbjct: 491 LVLVFGVLRPVLKSLTNPNA--GKELQVAGMPGELGEDEGLDGGLANDRVSLSGPQNILL 548 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + +++ + R A+++++W ++ Sbjct: 549 PSP--------SEGYEAQLNAIKNLVADDPGRVAQVVKEWINADE 585 >gi|284159411|ref|YP_440758.3| flagellar MS-ring protein [Burkholderia thailandensis E264] gi|83653465|gb|ABC37528.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264] Length = 677 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 129/525 (24%), Positives = 219/525 (41%), Gaps = 22/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 161 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 220 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 221 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 278 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ AI LV+++VP++ +VT++D G LLT Sbjct: 279 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 338 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 339 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 398 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 399 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 458 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 459 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 518 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 519 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 578 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR E P + GL D L +++ Sbjct: 579 AALYFMFVRPALRR----AFPPPAEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEH 634 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + +++ + + + A +++ W E Sbjct: 635 PALLAFESEK---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 676 >gi|70729030|ref|YP_258764.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5] gi|68343329|gb|AAY90935.1| flagellar M-ring protein FliF [Pseudomonas fluorescens Pf-5] Length = 595 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 118/586 (20%), Positives = 230/586 (39%), Gaps = 54/586 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSQMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ N G+E+ DK G + FM+ Sbjct: 85 ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVAPGDGNVGFEILDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L+ VTV+D G LL+ + GK + ++ + Sbjct: 205 GQVMAIVNLVATSVPELNKSQVTVVDQKGNLLSDQAENSALTMAGKQFDYSRRLEGMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + QRS ++ P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSV-NEQRSSSNGPQ 323 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P + Sbjct: 324 GVPGALSNQPPAPASAPQTTGGATAAAGMVQPGQPLLDANGQQIMDPATGQPMLAPYPSD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS+AVVV+ + G ++ LA Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVAVVVDDQVKVNPANGETSRAPWSADELARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ ++ F + + F ++ ++ ++ Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSAERGEVIADIPF----YSQPWFWDIVKQVLGVLF 499 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + K G G + ND ++L + Sbjct: 500 ILVLVFGVLRPVLNNITGGGKNKELAG--LGSDVELGGMGGLDGELGNDRVSLGGPQSIL 557 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + ++ + R A+++++W ++ Sbjct: 558 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 595 >gi|292492381|ref|YP_003527820.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4] gi|291580976|gb|ADE15433.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4] Length = 566 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 130/561 (23%), Positives = 236/561 (42%), Gaps = 34/561 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + L + + L +I V + L + + SP+Y LY + + I A Sbjct: 25 LAVLQANIARLSPLKQVGLLLMIAVSVALGVGIFLWSQSPNYQILYGAVSGKEKGEIVEA 84 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +ANID+++ + ++ VP+S V + R+ LA +GLP S+ G+EL ++ FG++ F+ Sbjct: 85 LQKANIDYQLDEATGALMVPASQVHEVRLQLAMEGLPRSAGT-GFELLEQNPGFGVSEFL 143 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SV 184 ++ R LEGE+ARTI +++ + +ARVH+ +P F + P+ASV++ Sbjct: 144 EKARYQRVLEGELARTISTLNNVKSARVHLALPKRSVFIRDRKVPSASVVLDLYPGRMLA 203 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIE 242 AI HLVA+++P L+ VTV++ G LLT E + + + I+ E Sbjct: 204 PGQVAAITHLVASSIPELESAGVTVVNQEGDLLTQPERSQTLEMTASQFEYTRRIEEEYG 263 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I + LA +G D R+ VVAE++ + + Y+P+ + RS + +++ + P Sbjct: 264 HRIQRILAPLVGADKVRAQVVAEVDFTVTEQTQERYEPEKRALRSEQTAEEERIG-GRLP 322 Query: 303 ESAVTVEQNMPHVSDRKVPL----------PRSLENTDKKEEQSNYEINTKSIATTHDNY 352 N P + P ++ NYE++ Sbjct: 323 GGIPGALSNQPPDEAQVPETLNGANEGESQPSEPPSSRSLRATRNYELDRTISHIRLAPG 382 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RLS+AV+V++ +T+ G + + L I +V A G N RGDTI + + Sbjct: 383 DIRRLSVAVLVDEKLVTDAEGNVSTSPRSPQELEHITGLVKEAVGFNPDRGDTINVINAP 442 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F+ N+ + F + ++ L + L R Sbjct: 443 FVPNEELEPLPEPPFWQ---QEWFWVAVKQGGGILAVLFLLLGVLRPTFRRLT------- 492 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 V + P S + D + L S+ + + + + R+ Sbjct: 493 TVPEPVTVPSLPKGSDEDKEGLKEDRLTLSSNAPTLQLSGPDSL--------EANLERVR 544 Query: 533 HMIEINEERFAKILRKWARSE 553 M + ER A++++ W + Sbjct: 545 KMAADDSERVAQVVKNWVSGD 565 >gi|85713555|ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] gi|85699459|gb|EAQ37326.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A] Length = 541 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 140/549 (25%), Positives = 242/549 (44%), Gaps = 13/549 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG +R++ + +V V I F V +P L+ L V D + I Sbjct: 1 MQGLLAFLKGLGASRLMAMVAVTTVLIAFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + ++G+ I VP V + R+ LA GLP GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I R+RALEGE+ARTI++I I ARVH+V+P+ F + +P+AS+++R + Sbjct: 120 QNINRLRALEGELARTIRAIDRIQDARVHLVLPERPLFTREAPQPSASIVVRVRGGLEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AIRHLVA+AV L V+++D TG+LL A + + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSTTDADGVTGDERRTAFEKRMRSQVE 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 +++ +G R + A+ + + +DP+ +V RS + ++ S T+ V Sbjct: 240 AIVSSVVGNGRARVQLSADFDYNKITQTSDTFDPEGRVLRSSQTREE--SSLTADNNGQV 297 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV +P P ++ + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 298 TVNNELPGNQPSDNPN-QARDQSKKSEETNNYEISRTTKTEVSEAGRVNRISVAVLVDGT 356 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G+ + L I +V +A G + +RGD + + ++ F E Sbjct: 357 YAKDDKGQMVYTERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFAEPPAIVPLAEPA 416 Query: 427 ---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + + V + L+V F+ + L + + V + L P Sbjct: 417 GLLGMIALTKDDVMYFVELAVMALLGLVVVFMVIRPLVQRILAAEPAAASVPPAAALPVP 476 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 ++A T N + +++ V QS R+ + E N A Sbjct: 477 ADANAQPTATGQNL------IPGSNATAQLIDVAQVQGQVHAQSVHRVGELAERNPTETA 530 Query: 544 KILRKWARS 552 I+R+W Sbjct: 531 SIIRQWLAE 539 >gi|327481269|gb|AEA84579.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166] Length = 594 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 116/585 (19%), Positives = 235/585 (40%), Gaps = 52/585 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y L L D N++ L Sbjct: 24 LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V ++ + +AR+ LA G+ + SN G+E+ DK G + FM+ Sbjct: 84 AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 R LEGE+ RTI S++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L+ +TV+D G LL+ + E ++ GK + ++ Sbjct: 204 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + ++PD RS + + ++S + P+ Sbjct: 264 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P Sbjct: 323 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 382 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 +++ NYE++ T + +L RLS+AVVV+ G LA Sbjct: 383 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 442 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V A G ++ RGD++++ + F+ + + F V+ ++ ++ Sbjct: 443 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIP---FYSQPWFWDVVKQVLGVLFI 499 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L++ F L + + +A G+ + + G + ND ++L + Sbjct: 500 LVLVFGVLRPVLKSLTNPNA--GKELQVAGMPGELGEDEGLDGGLANDRVSLSGPQNILL 557 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + +++ + R A+++++W ++ Sbjct: 558 PSP--------SEGYEAQLNAIKNLVADDPGRVAQVVKEWINADE 594 >gi|76581502|gb|ABA50977.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710b] Length = 627 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 110 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 169 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 170 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 227 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 228 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 287 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 288 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 347 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 348 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 407 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 408 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 467 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 468 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 527 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L +++ Sbjct: 528 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 584 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R +++ + + + A +++ W E Sbjct: 585 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 626 >gi|167813742|ref|ZP_02445422.1| flagellar MS-ring protein [Burkholderia pseudomallei 91] Length = 559 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 135/563 (23%), Positives = 228/563 (40%), Gaps = 24/563 (4%) Query: 7 LLQFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L F + L R + L + I +A + +P Y LY L D I Sbjct: 4 LGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAI 63 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL +AN+ ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ Sbjct: 64 IAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGIS 121 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 F +++ RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ Sbjct: 122 QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR 181 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 A+ +V+++VP++ +VT++D G LLT + L VQ I+ Sbjct: 182 VLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT 241 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298 + I+ LA G N RS V A+++ + Y P+ ++S S+ S Sbjct: 242 QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELA 301 Query: 299 TSQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S N P + P + +D+K+ +NYE++ Sbjct: 302 QSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS 361 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + Sbjct: 362 MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVN 421 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + D++ V L ALRR Sbjct: 422 SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFPPP 478 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P GL D L +++ + R +++ Sbjct: 479 AEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDY 535 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 536 ARTIARQDPKIVATVVKNWVSDE 558 >gi|192359622|ref|YP_001982191.1| flagellar MS-ring protein [Cellvibrio japonicus Ueda107] gi|190685787|gb|ACE83465.1| flagellar M-ring protein FliF [Cellvibrio japonicus Ueda107] Length = 569 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 127/560 (22%), Positives = 239/560 (42%), Gaps = 25/560 (4%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F + +SL R + L + + + A ++ Y LY +++ D + L Sbjct: 21 DFLEGFSSLNLLRQIGLIITLAASVAIGFAVVMWMQGDDYRPLYGRMDNLDAANVIDVLD 80 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + I F++ N +I V + V AR+ LA GLP SS +G+EL DK G + F++ Sbjct: 81 QHKIKFKMDTNTGAILVAADDVHMARLKLAEFGLP-SSPVAGFELMDKEQPLGTSQFVEN 139 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186 R++EGE+ARTI SI+ I +ARVH+ MP F + A+PTASV + A Sbjct: 140 TRYQRSIEGELARTITSITSIRSARVHLAMPKKTVFVRDAAKPTASVFVEVFAGRTVAPA 199 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244 +AI +LVA++VP++ M +VTV+D G LL+ E ++ + + ++ + Sbjct: 200 QVKAIMNLVASSVPDMKMENVTVVDQHGSLLSTGEESSDLLLATRQHQYAKEVETSVIQR 259 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 IN L +G FR+ V A+++ + ++PD RS + +++ Sbjct: 260 INSILEPVVGDGKFRAQVNADIDFTAVEQAAETFNPDLPAIRSEQTLNESRTGSEL-AGG 318 Query: 305 AVTVEQNMPHVSDRKVPLP----------RSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P + + P + ++++ NYE++ T H L Sbjct: 319 IPGALTNQPPGTAAQAPEQIDPATGQPIQQQPPKNNREQATRNYELDRTISYTKHQQGTL 378 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RL++AVVV+ + G D+ L ++ +V A G ++ RGD++ + + F Sbjct: 379 KRLTVAVVVDDKVVRNAEGVETRVPWTDAELERLSILVRDAVGFSAVRGDSVNVLNSPFS 438 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 V+ + + I L ++ L+V F L L + + + + Sbjct: 439 GIDASVQTQVEDAMPW-WQQWIMANIKYLAGILVILIVVFGLLRPLFKSLSRTGSSIADE 497 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L+ + A + ++ + L + + ++ + + Sbjct: 498 EEARELAALEAAGAGKLDGISDETVTLTGGSAFMLPGPE--------QGYEEQINAIKGL 549 Query: 535 IEINEERFAKILRKWARSEI 554 I + R A++++KW + Sbjct: 550 IADDPGRVAQVVKKWINRDD 569 >gi|167843852|ref|ZP_02469360.1| flagellar MS-ring protein [Burkholderia pseudomallei B7210] Length = 565 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 135/563 (23%), Positives = 228/563 (40%), Gaps = 24/563 (4%) Query: 7 LLQFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L F + L R + L + I +A + +P Y LY L D I Sbjct: 10 LGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAI 69 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL +AN+ ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ Sbjct: 70 IAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGIS 127 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 F +++ RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ Sbjct: 128 QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR 187 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 A+ +V+++VP++ +VT++D G LLT + L VQ I+ Sbjct: 188 VLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298 + I+ LA G N RS V A+++ + Y P+ ++S S+ S Sbjct: 248 QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELA 307 Query: 299 TSQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S N P + P + +D+K+ +NYE++ Sbjct: 308 QSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS 367 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + Sbjct: 368 MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVN 427 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + D++ V L ALRR Sbjct: 428 SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFPPP 484 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P GL D L +++ + R +++ Sbjct: 485 AEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDY 541 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 542 ARTIARQDPKIVATVVKNWVSDE 564 >gi|167568365|ref|ZP_02361239.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786] Length = 554 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 123/525 (23%), Positives = 216/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G Sbjct: 37 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASMG 96 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + +ARVH+ +P Sbjct: 97 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 154 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 155 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 214 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 215 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 274 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ +++ S+ + S N P + P + Sbjct: 275 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 334 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN + GR Q LA+I Sbjct: 335 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 394 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 395 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 454 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P + GL D L + + Sbjct: 455 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPNDAIALDGLPSPDKKQLADEDDEH 511 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + +++ + + + A +++ W E Sbjct: 512 PALLAFESEK---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 553 >gi|224826633|ref|ZP_03699734.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] gi|224601234|gb|EEG07416.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] Length = 576 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 130/572 (22%), Positives = 232/572 (40%), Gaps = 33/572 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ + +L + ++L + + + + +P Y L+ L D +I+ Sbjct: 15 RVNEASDRFKALPNNKKILLFAALAAVFSVIVGLLILNRTPDYKVLFANLADRDGGQITA 74 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL + N+ ++I G ISVPS V R+ LAAQGLP + G+EL D FG++ F Sbjct: 75 ALQQMNVPYQI-GGGGVISVPSDKVYDVRLKLAAQGLPKAGG-VGFELMDN-QKFGISQF 131 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RA+EGE+ARTI++I + +ARVHI +P F + +PTASVM+ V Sbjct: 132 AEQVNYQRAIEGELARTIEAIGAVESARVHIAIPKQSVFVRDQQQPTASVMLNLYPGRVL 191 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHE 240 I HLV+++VPNL +VTV+D G LL++ N G + L V I+ + Sbjct: 192 DGGQISGILHLVSSSVPNLSARNVTVVDQDGNLLSSQSDVNNAAGLDQRQLGYVHQIESD 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRS 297 I L G N R+ V A ++ + + P+S S S+ + S Sbjct: 252 FVKRIEGILEPIFGKGNVRAQVTANVDFSEVEQTSETFRPNSTPNPSATRSQQIVEKLGS 311 Query: 298 ETSQPESAVTVEQNMPHVSDRKV---------------PLPRSLENTDKKEEQSNYEINT 342 ++ P N P + P +++ +NYE++ Sbjct: 312 GSNLPGGVPGALSNQPPSAASAPLTLPPGAAPGTATLSGQPLGQNGALERQLITNYEVDK 371 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T L+RLS AVVVN + + G + +IN +V G N+ R Sbjct: 372 TIQHTKLPKGVLKRLSAAVVVNYRLMPDRNGEVKPTPLTAQEIQQINNLVRETMGYNTER 431 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GDT+ + + F N S + +D +S + ++ ++ + L + F + + R Sbjct: 432 GDTLNVVNAAFAGNAPPASLQEK--VVDYVSSNATDLVKYVLLAIAVLYLLFGVVRPIVR 489 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 G + + + + + + Sbjct: 490 DVLKPAKGDKGQPGAAGEEAGGVPGRLLAVAREEGEAGAAAVEEANLDPRE-----LQRR 544 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + +++ + A+I+++W S+ Sbjct: 545 QYMSNLEAARELVKADPRMAAQIIKEWISSDE 576 >gi|291278937|ref|YP_003495772.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1] gi|290753639|dbj|BAI80016.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1] Length = 556 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 130/561 (23%), Positives = 248/561 (44%), Gaps = 18/561 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D + QF SL + + + + + + + + N P Y LY L D Sbjct: 1 MALKDFINQFKAVFNSLSLIQKVSIVTATVAVFLTIIVLVIWANKPVYKTLYSNLSSDDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L I + + DNG +I VP V + R++LA +GLP S +G+ELFDK +SF Sbjct: 61 AKIVEELKANKIPYELKDNGKTILVPEKNVYELRLNLAQKGLP-SGGGAGFELFDK-SSF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F Q + RAL+GE+ARTI+S+ + ARVH+ +P F + P A+V+++ Sbjct: 119 GISEFAQNVNYQRALQGELARTIKSLDEVEDARVHLTLPKERIFVSEESSPKATVVLKFR 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234 ++ +AI LVA AV L + +V V+D+ G+LL+ + + L Sbjct: 179 NGANISRENIKAIASLVAGAVKGLTIDNVQVVDTKGRLLSEFLSKDYEPLLLTQTQLEYQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + I+ +E IN L+ LG DN + V A+++ + + + YDP+ V RS + + Sbjct: 239 KHIEKNLESKINSILSRVLGPDNAVAKVTADIDFTKKVVSKEEYDPN-PVLRSQQTVEIE 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++ + P V N+ ++ S K E N+E+ + Sbjct: 298 SKNTPNAPGGTPGVSSNLAEPNNI---NNGSNSEYSKAETTQNFEVGKTVTKEEKPIGVV 354 Query: 355 ERLSIAVVVNKGRLTEVLGRSA---DQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++++AV++N ++ + G+ + + +I K+V +A GI+ RGD I +T++ Sbjct: 355 KKITVAVLLNDKKVVKEEGKKSKIEYVKWTPEEIEKIKKLVESAAGIDVNRGDRIEVTNI 414 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F T+ ++ L+ +L FL + + + + Sbjct: 415 SFDTTHDLEVA--SFYNKQEKMSLIFTIAKYVLALLIVVLFYFLVVRPILKRLETVRETE 472 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL-QSRINSYVSKQSDLR 530 + + S ++ G ++ ++I + +++ +K + Sbjct: 473 EGTFVAAGATGKGESVDISIGEEIKFPKTIEELEKEIENELEESAPVDVDTVKTKVMLKK 532 Query: 531 LLHMIEINEERFAKILRKWAR 551 L + E A +++ W + Sbjct: 533 LEEAANEDPETIANLIKVWIK 553 >gi|186477678|ref|YP_001859148.1| flagellar MS-ring protein [Burkholderia phymatum STM815] gi|184194137|gb|ACC72102.1| flagellar M-ring protein FliF [Burkholderia phymatum STM815] Length = 593 Score = 385 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 133/565 (23%), Positives = 234/565 (41%), Gaps = 29/565 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + S T + L + V I + + +P Y LY + D Sbjct: 43 LASRFPGLPTSLTQMRGNPRAPLIFAVAVLIAVVAGLVLWSRAPDYKVLYSNVSDQDGGA 102 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I AL +AN+ ++ S+ G +I +P+ V + R+ LA+QGLP S S G+EL D FG+ Sbjct: 103 IVAALQQANVPYKFSEAGGAILIPADQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGI 160 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + F ++I RALEGE+ RTI+SIS + ARVH+ +P F + P+ASV++ Sbjct: 161 SQFAEQINYQRALEGELQRTIESISTVKTARVHLAIPKPTVFVRDREAPSASVLVNLYPG 220 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239 AI H+VA+AVP++ + VT++D G LLT + L Q I+ Sbjct: 221 RMLDEGQVVAITHMVASAVPDMSVRGVTIVDQDGNLLTQAGANGAGLDATQLKYRQQIER 280 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE- 298 + I+ L G N S+V A+++ Q++ Y P++ +++ S+ + Sbjct: 281 NTQQRIDAILGPMFGTGNAHSSVSADIDFSRQELTSEKYAPNNDPQQAAIRSQQTSTATE 340 Query: 299 --TSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348 S N P + +D K+ +NYE++ T Sbjct: 341 MSQSGASGVPGALSNQPPQPASAPITASANGASGVTTTPISDHKDSTTNYELSKTVSHTE 400 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++RLS+AVVVN R+ + G + Q LA+++++V A G + RGDT+ + Sbjct: 401 AAVGGIKRLSVAVVVNYMRVFDAKGHATMQPISADKLAQVDQLVKEAMGYDQARGDTVKV 460 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S F + ++ D+++ + + LV L + ALRR Sbjct: 461 ISSAFQQIADPDADLPWWRTKDMIAMYKQIATYLGIGLVALFLYFVMVKPALRRAFPPPP 520 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + +A + +L + D +++ Sbjct: 521 EAVAALPSPDEPVLDGLPTAAAVAAEEDVEGSLVALESDK-------------AKYERNL 567 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 568 EYARQIARQDPKIVATVVKSWVSDE 592 >gi|170741410|ref|YP_001770065.1| flagellar MS-ring protein [Methylobacterium sp. 4-46] gi|168195684|gb|ACA17631.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46] Length = 572 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 193/571 (33%), Positives = 306/571 (53%), Gaps = 18/571 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M+ +Q + + + LG R+ L + L + ++++ P + LY L DV Sbjct: 1 MSGREQAERLWNNIIELGARRLAALGIIGLTVFLAVGLGAYYLSRPAQETLYGGLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI L +ANI F +S +G+++ VP +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 GRIGSVLKDANIPFDVSTDGTAVLVPYGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ++ G+ AARVHIV+PD GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQTMKGVKAARVHIVLPDRGSFRREQQPPSASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 A+AIRHLVA+A+P + VTV+ + G LL + +++ GK ++ + + Sbjct: 180 PADDGSGAQAIRHLVASAIPGMKPERVTVIGTDGTLLLSGDDVGNAPTGKMANLEKLVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI+ NI + L +LGV NF +V A LN D E +++PD +VERS++ +++ + S+ Sbjct: 240 EIQDNIRRTLTPYLGVGNFEVSVAARLNTDKTSTNETIFNPDQRVERSVKATRETENSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + T +QN+P R S T K+E+ +NYEI++K+I T D Y ++++S+ Sbjct: 300 RSSQRPTTAQQNLPDQRTRSDGNDTSSTETQKREDLTNYEISSKTIQTVSDGYGIKQISV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VNK RL+ + G +A ID + EI ++V++A G + RGD + + ++ F+ + Sbjct: 360 AVLVNKSRLSSLAGPNAPPAAIDQQIGEIEQLVASAAGFSKERGDHVKVAAVGFVNDGAP 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 +S ++L R AT+INA LV L+ + GL R A + E+ + Sbjct: 420 LEPVPPLSLTEVLMRQSATLINAATILVVASLLIWFGLRPALRAILEVPAAEQEIAALAA 479 Query: 480 LSPPPISSAVTTGLMPNDNIAL----------------DSSNQDIFSHSRNLQSRINSYV 523 A+ + L Q +L + + + Sbjct: 480 EGAAGAVPALPGAEAGSAAAGLLEGSPEAAALAAAGGTPGPAQLGPPVMASLIDDLTNRM 539 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + +L MIE +EE+ A IL++W E Sbjct: 540 NSSPQKKLEQMIEFDEEQAANILKRWLMREE 570 >gi|288942636|ref|YP_003444876.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180] gi|288898008|gb|ADC63844.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180] Length = 577 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 114/552 (20%), Positives = 220/552 (39%), Gaps = 19/552 (3%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 +S + R + L + ++ +A F+ P Y L+ +LE ++ + AL++ Sbjct: 33 LQSFREMPVGRQIALLGTLAGGLVAVVAILFWALKPTYVPLFSQLEGAEAAEVMEALTQL 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + +R+ ++ I +P V + R+ LA QGLP S ++ G+EL + + FG + ++ Sbjct: 93 GVPYRVDNSSGRIEIPQQRVAETRLQLAGQGLPKS-ADIGFELLQQESGFGTSRLIEGAR 151 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSA 188 RALEGE+ R+I ++ + ARVHI + F + P+ASV++ Sbjct: 152 FQRALEGELGRSIAALEPVDKARVHIARAERSVFVRERVPPSASVVVHLKGSRGLTDTQV 211 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246 AI HLV+++VP L VTV+D +G+LLT++ + + L ++ + Sbjct: 212 GAIVHLVSSSVPELTPDRVTVVDQSGRLLTSDGEDKSSRLSLDHLEYTHRVESRYVDRVQ 271 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +G D R V A+L+ + + YDPD RS +L+++ + Sbjct: 272 SLLVPIVGRDRVRVQVSADLDFSRVERTQESYDPDKTAIRSEQLNEEERIGADPLAGGIP 331 Query: 307 TVEQNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P + ++ ++ ++ NYE++ + RL+ AV Sbjct: 332 GALTNQPPAGGVVGQQQAAQGNATVPSSRSQQTTRNYEVDRTISHIQETPGGVRRLTAAV 391 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VV+ G + D+ + + +V A G N RGD++ + S F+ + Sbjct: 392 VVDYVDQVNEAGEPIRVPRSDAEMETLRDLVREAIGFNEARGDSLQVRSASFVPESDEDE 451 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + + + G LL + L ++ N K E Sbjct: 452 EPIWTQPW---------FLELVKIVGGLLLALIVMLTVVKPALNQILPKPPEPEKPQEDE 502 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + G + S S L + + M+ + +R Sbjct: 503 ETRALTDGIEGEGEGEEGEEIVSLTHEPSGLAALMGPKGPDRQQLDLEAVREMVREDPKR 562 Query: 542 FAKILRKWARSE 553 +++++W + Sbjct: 563 VVQVMKQWLAED 574 >gi|229591853|ref|YP_002873972.1| flagellar MS-ring protein [Pseudomonas fluorescens SBW25] gi|229363719|emb|CAY51114.1| flagellar M-ring protein [Pseudomonas fluorescens SBW25] Length = 593 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 116/586 (19%), Positives = 225/586 (38%), Gaps = 53/586 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 22 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ S SN G+E+ DK G + FM+ Sbjct: 82 AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 202 GQVLAIVNLVATSVPELSKSQITVVDQKGNLLSDQGENSALTQAGKQFDYSRRVESMLTQ 261 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + + + + P+ Sbjct: 262 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSEQRTAANGPPQ 321 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P Sbjct: 322 GVPGALSNQPPAPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 381 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388 + + N+E++ T ++ RLS++VVV+ G LA Sbjct: 382 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNAADGAVTRAPWSADELARF 441 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ +M F + F ++ ++ ++ Sbjct: 442 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIAEPAF----YSQPWFWDIVKQVLGVLF 497 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + + K ++ G + ND ++L + Sbjct: 498 ILVLVFGVLRPVLNNITGNGKK--QLAAFGGSDVELGGMGGLDGELANDRVSLGGPQSIL 555 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + ++ + R A+++++W ++ Sbjct: 556 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 593 >gi|330818622|ref|YP_004362327.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3] gi|327371015|gb|AEA62371.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3] Length = 599 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 120/524 (22%), Positives = 213/524 (40%), Gaps = 23/524 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL ++NI ++ +D G +I VP+S+V + R+ LA+ G Sbjct: 86 WSRAPDYKVLYSNLSDRDGGAIIAALQQSNIPYQFTDAGGAILVPASLVHETRLKLASMG 145 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI SI+ + AARVH+ +P Sbjct: 146 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRAARVHLAIPKP 203 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + AI +VA+ VP++ +VT++D G LL+ Sbjct: 204 SVFVREREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 263 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + + L VQ ++ + I+ LA G N R+ V A+++ + + Sbjct: 264 QQSAAGLDANQLKYVQQVERNTQKRIDAILAPMFGAGNTRAQVSADVDFSRAEQTSESFS 323 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLENT 329 P+ +++ S+ S S N P + Sbjct: 324 PNGTQQQAAIRSQQTSSSTEMSQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPIS 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 D+K+ +NYE+N ++RLS+AVVVN + + G Q L ++ Sbjct: 384 DRKDSTTNYELNKTVSHVEQATGGIKRLSVAVVVNNLPVADAKGHVTMQPLSADKLRQVE 443 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V A G +++RGD++ + + F E + D+++ + + Sbjct: 444 QLVKDAMGFDAKRGDSVNVVNSQFTELADPLANVPWWRTPDMIAMAKDIAKWLGIGVAAA 503 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L A+RR + G P + S Sbjct: 504 ALYFMFVRPAMRRAFPPPEPAAASAGALPGPDEPA---------LDGLPALESSLGAQAS 554 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + L + +++ + + + A +++ W E Sbjct: 555 PEAALLSFEADKQRYERNLDYAKMIARQDPKIVATVVKNWVTDE 598 >gi|83647861|ref|YP_436296.1| flagellar MS-ring protein [Hahella chejuensis KCTC 2396] gi|83635904|gb|ABC31871.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] Length = 572 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 127/568 (22%), Positives = 236/568 (41%), Gaps = 29/568 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +++ L R L+L + I + A + N P Y LY + V D Sbjct: 19 DLVENRSDMMLGFNRLSLLRQLVLMVGVAASIAMGAAIILWANEPAYQPLYPDMSVYDST 78 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +S LS+ NI F++ ++ V + V AR+ LAA G+ + GYEL DK G Sbjct: 79 EVSDILSQNNIHFKVEPKSGALLVAAEDVSAARMRLAAAGV-TQDRTIGYELLDKDQGLG 137 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + FM+ R LEGE+ARTI S+ + ARVH+ +P F + RP+ASV++ Sbjct: 138 SSQFMESTRYRRGLEGELARTISSLRNVKNARVHLAIPKQSVFVRDKRRPSASVLVELTG 197 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAI 237 EAI +LVA +VP +D DVTV+D G LL+ N + + + + Sbjct: 198 SRSLHQDQVEAIVNLVAGSVPEMDHRDVTVVDQRGNLLSQNNLTEDDLRTSREFQYARRM 257 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + +N L LG FR+ V A+++ + + ++PD + RS + + + + Sbjct: 258 EEVLTGRVNSILEPILGPGRFRAEVSADVDFTAVEQAQETFNPDPQAVRSEQEIGEQRIA 317 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTKSIA 346 + + N P +K+ NYE++ Sbjct: 318 GS--NQGVPGALSNQPPGVAAVPEQAGVAGAAANATANSQATDIRKQTVRNYEVDRTVSY 375 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T K++RL++AVVV+ R G + ++ L + +V A G ++ RGD++ Sbjct: 376 TKQHQGKVQRLTVAVVVDDLRRVGADGAVTTEAWPEAELQRLTVLVRDAVGYSAARGDSV 435 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + F+ ++ S + +I V + L++ F + + + Sbjct: 436 NVINTPFMAEEVEISDYEAPLWE---QPWIRELIKWGVAFLIVLILVFGVIRPTFKNLSS 492 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A + ++ +G+ +++ L+++ + S S ++ Sbjct: 493 GGADAKNLALAGDEDGLAELESLGSGVGEGESVGLNAAGDFLLPGS--------SEGYEK 544 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEI 554 L +I + R A+++R+W ++ Sbjct: 545 KINALKGLIAEDPGRVAQVVRQWVMADE 572 >gi|167909065|ref|ZP_02496156.1| flagellar MS-ring protein [Burkholderia pseudomallei 112] Length = 573 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 56 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L +++ Sbjct: 474 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 530 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R +++ + + + A +++ W E Sbjct: 531 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 572 >gi|34498591|ref|NP_902806.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] gi|34104445|gb|AAQ60803.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] Length = 579 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 129/572 (22%), Positives = 240/572 (41%), Gaps = 31/572 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L + +L R ++ + + + + A +P Y L+ L D +++ Sbjct: 16 RLNEAGDRFKALPNNRKILFLTALAAIFAVVVGAVLLNRTPSYKILFSNLADRDGGQVTA 75 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL + N+ +++ G ISVP+ V R+ LAAQGLP +S G+EL D FG++ F Sbjct: 76 ALQQMNVPYQL-GEGGVISVPADKVYDVRLKLAAQGLPKASG-VGFELMDN-QKFGISQF 132 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ R++EGE+ARTI++IS + +ARVHI P F + PTASVM++ + Sbjct: 133 AEQVNYQRSIEGELARTIEAISSVQSARVHIATPKQSVFVREQQSPTASVMLQLYPGRML 192 Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHE 240 I HLV+++VPNL + +VT++D G LL+ + + + L V+ I+ Sbjct: 193 DGGQVAGILHLVSSSVPNLPLKNVTIVDQDGNLLSKQAGPDENSGLDQRQLGFVRQIEEG 252 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR---S 297 I L G N R+ V A ++ + Y P+S S S+ + Sbjct: 253 YVKRIEDILEPIFGRGNARAQVTANVDFSETEQTSETYRPNSSPNPSATRSQQISEKLVN 312 Query: 298 ETSQPESAVTVEQNMPHVSDRKV---------------PLPRSLENTDKKEEQSNYEINT 342 ++ P N P + S T +++ +NYE++ Sbjct: 313 GSANPTGVPGALSNQPPSAASAPITLPPGAAPGTANLSGGSVSASGTLQRDITTNYEVDK 372 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 T ++RLS AVVVN R+ + G + +IN +V A G NS R Sbjct: 373 TIQHTKVPTGVVKRLSAAVVVNYRRMPDKSGEMKPTPLTPQEVQQINNLVKEAMGYNSGR 432 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GDT+ + + F +N + +D +S + +++ + + L + F + + R Sbjct: 433 GDTLNVVNAAFADNAQPVTMQE--RVIDYVSGNGTSLVKYGLLGIAVLYLLFGVVRPIMR 490 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 A G++ + G+ + ++ + Sbjct: 491 DLVRPPAPAPGAEGEAAAAGAAGPGGRLLGVAGEEGEPGVAAAMAGGGEDPREAQK---R 547 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + +++ + A+I+++W ++ Sbjct: 548 QYSSNLEAVRELVKSDPRMAAQIIKEWISADE 579 >gi|126441455|ref|YP_001057275.1| flagellar MS-ring protein [Burkholderia pseudomallei 668] gi|217425051|ref|ZP_03456547.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576] gi|254295774|ref|ZP_04963231.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|126220948|gb|ABN84454.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668] gi|157805913|gb|EDO83083.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|217392071|gb|EEC32097.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576] Length = 598 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L +++ Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDVLALDGLPSPDKKQLAEEDEEH 555 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R +++ + + + A +++ W E Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597 >gi|304312787|ref|YP_003812385.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1] gi|301798520|emb|CBL46750.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1] Length = 575 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 111/567 (19%), Positives = 227/567 (40%), Gaps = 33/567 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + ++ +L R + L + + + + P + L+ + + + ++++ Sbjct: 20 NPIMAALDGLGNLPWLRQVGLMVGLAASVAIGFGVVLWSTEPEFRPLFTDVSMIEASQVA 79 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I F++ + V + + AR+ LA +GLP +N GYEL DK FG + Sbjct: 80 DVLAREKIQFKVDPASGLVMVRAEKINDARMALAKEGLP-GGNNMGYELLDKEQGFGTSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FM++ R++EGE+A+TI S++ + ARVH+ +P F +PTASV + Sbjct: 139 FMEKTRYFRSIEGELAKTISSLTPVRNARVHLAIPKRSVFINDKRKPTASVFVELYPSRS 198 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHE 240 + AI HLVA++VP + DVTV+D G+LL+ + + + L I+ + Sbjct: 199 LERDQVAAIVHLVASSVPEMSSKDVTVVDQRGRLLSEDTSNGEMTIAARQLDYQHNIEEK 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I L LG + F+ + A+++ + + Y+PD RS + +++S + Sbjct: 259 YLGRIRDLLEPLLGPERFKVQLTADIDFNVVEQTAESYNPDLPALRSEQTL--SEKSSAA 316 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEINTKSIATTH 349 P N P + N +++ NYE++ T Sbjct: 317 GPMGVPGALSNQPPGAASVPEQATGSNNAGNNASSTDAGNQRQQATRNYELDRTISHTRR 376 Query: 350 DNYKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYLAEINKIVSAATGINSRRGD 404 ++RLS+AVV++ + ++ L I ++ A G ++ RGD Sbjct: 377 QVGGIKRLSVAVVLDDKWQNPAADAAPGTQPTRVALSEAELERITLLIKDAVGYDAARGD 436 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ++++ + F Q + + + F VI + + +++ F L + + Sbjct: 437 SVSVINQPFSPVQFDSIPDLPIW----QQAWFQDVIRQVAGWLVVIILIFGVLRPILKGL 492 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + S + A + + ++ N Sbjct: 493 ------AFQGKEDEVDSSLESALASVGADGSLGDSSFAGADVTFSGSGPNPLLPGPDASF 546 Query: 525 KQSDLRLLHMIEINEERFAKILRKWAR 551 +Q + ++ + R A++++ W Sbjct: 547 EQHIDAIRALVAEDPRRVAQVVKSWIE 573 >gi|53717872|ref|YP_106858.1| flagellar MS-ring protein [Burkholderia pseudomallei K96243] gi|126453288|ref|YP_001064517.1| flagellar MS-ring protein [Burkholderia pseudomallei 1106a] gi|134283661|ref|ZP_01770360.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|162210024|ref|YP_331831.2| flagellar MS-ring protein [Burkholderia pseudomallei 1710b] gi|226199798|ref|ZP_03795349.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan 9] gi|242317746|ref|ZP_04816762.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b] gi|254182183|ref|ZP_04888780.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|254188113|ref|ZP_04894625.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur 52237] gi|254196619|ref|ZP_04903043.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13] gi|254259466|ref|ZP_04950520.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a] gi|52208286|emb|CAH34218.1| flagellar M-ring protein [Burkholderia pseudomallei K96243] gi|126226930|gb|ABN90470.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106a] gi|134245070|gb|EBA45165.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|157935793|gb|EDO91463.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur 52237] gi|169653362|gb|EDS86055.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13] gi|184212721|gb|EDU09764.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|225928149|gb|EEH24185.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan 9] gi|242140985|gb|EES27387.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b] gi|254218155|gb|EET07539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a] Length = 598 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L +++ Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 555 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R +++ + + + A +++ W E Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597 >gi|15964399|ref|NP_384752.1| flagellar MS-ring protein [Sinorhizobium meliloti 1021] gi|307311541|ref|ZP_07591182.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C] gi|307318896|ref|ZP_07598327.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83] gi|17380368|sp|O54239|FLIF_RHIME RecName: Full=Flagellar M-ring protein gi|15073576|emb|CAC45218.1| Flagellar M-ring transmembrane protein [Sinorhizobium meliloti 1021] gi|306895310|gb|EFN26065.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83] gi|306899558|gb|EFN30187.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C] Length = 557 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 269/552 (48%), Positives = 358/552 (64%), Gaps = 4/552 (0%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN P ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + + N L +VQ +Q Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + +KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL E+ KIVS+A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + M++L+R+ +INAL F+ LV + G+ L R G + Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSH--SRNLQSRINSYVSKQSDLRLLHMIEI 537 L P S A D + ++ N V + + RL M+EI Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNLGDEAGFNRRVKEGPERRLARMVEI 539 Query: 538 NEERFAKILRKW 549 +EER AKILRKW Sbjct: 540 SEERAAKILRKW 551 >gi|237810412|ref|YP_002894863.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346] gi|237505247|gb|ACQ97565.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346] Length = 598 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L +++ Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDVLALDGLPSPDKNQLAEEDEEH 555 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R +++ + + + A +++ W E Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597 >gi|167617536|ref|ZP_02386167.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4] Length = 594 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 125/525 (23%), Positives = 213/525 (40%), Gaps = 22/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ AI LV+++VP++ +VT++D G LLT Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR V + + + + Sbjct: 496 AALYFMFVRPALRRAFPPPAEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALL 555 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S +++ + + + A +++ W E Sbjct: 556 AFESEK-------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 593 >gi|896313|gb|AAB06801.1| flagellar MS ring [Pseudomonas aeruginosa] Length = 599 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 116/586 (19%), Positives = 238/586 (40%), Gaps = 52/586 (8%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F + + + R + L + + + A + P Y LY L D NR+ AL Sbjct: 27 LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I +++ N ++ V + +G+AR+ +A+ G+ + +N G+E+ DK + G + FM+ Sbjct: 87 TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185 R LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD VTV+D G LL+ + E + K + ++ + Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMADKQFDFTRRMEGLLTQ 266 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L L ++ V A+++ + +Y+PD RS + + + +++ + P+ Sbjct: 267 RVHNILQPVLDNGRNKTEVSADVDFSAVESTSEMYNPDQPALRSEQHNNEERQNSS-GPQ 325 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330 N P + Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389 + + NYE++ T +L RLS+AVV++ + G + Q LA Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 ++V + G ++ RGD++++ + F Q ++ F ++ ++ ++ Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV-TTGLMPNDNIALDSSNQDI 508 L++ F L + K GG G + +D +++ + + Sbjct: 502 LVLMFGVLRPVLSNITGGGKGKSLAGGGGGRDGDLALGESGLEGSLADDRVSIGGPSSIL 561 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + +++ + R A+++++W ++ Sbjct: 562 LPSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 599 >gi|83591884|ref|YP_425636.1| flagellar MS-ring protein [Rhodospirillum rubrum ATCC 11170] gi|83574798|gb|ABC21349.1| Flagellar FliF M-ring protein [Rhodospirillum rubrum ATCC 11170] Length = 551 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 149/553 (26%), Positives = 255/553 (46%), Gaps = 9/553 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F ++ +LG R+ LA V + I + ++ + LY L +D +I Sbjct: 1 MNSFVQTMRNLGPVRLAALAGVAIALIGFVIYVASRLSGTSMELLYGDLAPADAKQIIAQ 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E NI ++++++G S+ VPS V K R+ +A LP S + GYE+FD ++ G T F Sbjct: 61 LEERNIPYQMANDGRSVLVPSDQVLKLRVQMAESALP-SGATVGYEIFDSASALGSTQFT 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185 Q I VRALEGE+ART+++I G+ ARVH+V+P F + P+ASV++ Sbjct: 120 QNINMVRALEGELARTVRTIQGVEGARVHLVLPKREPFTRDQVAPSASVVLLMKGRRLQP 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 + A+++LVAAAVP + G V+++D G LLT E I + +A + + Sbjct: 180 EQVVAVQNLVAAAVPGMKPGQVSIIDERGTLLTRGMGEEGALIAQNQDELRKAEERRLAQ 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +I + L +GV R+ VVA+++ + +DP+ +V RS + +S Sbjct: 240 SIEQLLERTIGVGKVRAEVVADMDFNRIVTSRESFDPNGQVVRSTTTVDEQNKSSD--AV 297 Query: 304 SAVTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 S V+V+QN+P P S + ++ EE NYEI + ++RLS+AV+ Sbjct: 298 SNVSVQQNLPEAQFAGNGGAPTSQTSENRTEETVNYEITKIVTNEVKEAGVVKRLSVAVM 357 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V+ T G + Q + D + +I +V +A G + RGD I + +M F++ Sbjct: 358 VDGTSTTNDAGVTTWQPRSDDEMQKITSLVRSAMGYDQARGDQIEVVNMQFIDPGALFDD 417 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 F+ + L V +L+ L + L + + + GG +L+ Sbjct: 418 AAAWEFLGFTKAEVMKMAEGLGVAVVAILIILLVVRPLVQRAFENLPSGADQGGAGLLTA 477 Query: 483 PPISSAVTTGLMPNDNIA--LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 S TG A L ++ + ++ V S ++ +++ + E Sbjct: 478 EMQSHPQLTGPGGGSIPAGMLGMPDEMDDAEELIDIDKVEGRVKASSLRKIGEIVDKHPE 537 Query: 541 RFAKILRKWARSE 553 I+R W E Sbjct: 538 EALSIIRNWLYQE 550 >gi|157145268|ref|YP_001452587.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895] gi|157082473|gb|ABV12151.1| hypothetical protein CKO_01005 [Citrobacter koseri ATCC BAA-895] Length = 558 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 126/569 (22%), Positives = 228/569 (40%), Gaps = 49/569 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIIVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 RALEGE+ARTI+++ + ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKRARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D G LLT + + L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRRIES 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ +++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAVLRSRQLNESEQIGSGYPGG 311 Query: 305 AVTVEQNMPHVSDRKVPLP------------------RSLENTDKKEEQSNYEINTKSIA 346 N P ++ ++ ++ E SNYE++ Sbjct: 312 VPGALSNQPAPANAAPISTPPANQQNAQNTQTTNNTNSNVPRNTQRNETSNYEVDRTIRH 371 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T + ++RLS+AVVVN L + + +I + A G + +RGDT+ Sbjct: 372 TKLNVGDVQRLSVAVVVNYRALPDGK----PLPLTTEQMKQIEDLTREAMGFSDKRGDTL 427 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + F +I+A +L+ L+ L A+R Sbjct: 428 NVVNSPFTATDDLGGELP----FWKQQAFIEQLISAGRWLLVLLVAWILWRKAVRPQLAR 483 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + ++ + + ++D + R R+ + V Q Sbjct: 484 RAEETKAAQEQAQVR------------QETEEAVEVRLSKDEQTQQRRANQRLGAEVMSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 532 ---RIREMSDNDPRVVALVIRQWMNNDHE 557 >gi|312962276|ref|ZP_07776768.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6] gi|311283613|gb|EFQ62202.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6] Length = 592 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 117/586 (19%), Positives = 227/586 (38%), Gaps = 54/586 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 22 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ S SN G+E+ DK G + FM+ Sbjct: 82 AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 202 GQVMAIINLVATSVPELSKSQITVVDQKGNLLSDMAENSALTQAGKQFDYSRRMESMLTQ 261 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + + R+ ++ P+ Sbjct: 262 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSEQ-RTASNGPQ 320 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P Sbjct: 321 GVPGALSNQPPSPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 380 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388 + + N+E++ T ++ RLS++VVV+ G LA Sbjct: 381 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNPADGAVTRAPWSADELARF 440 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ +M F + F ++ ++ ++ Sbjct: 441 TRLVQDAVGFDASRGDSVSVINMPFSAERGETIAEPAF----YSQPWFWDIVKQVLGVLF 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + + K ++ G + ND ++L + Sbjct: 497 ILVLVFGVLRPVLNNITGNGKK--QLAAFGGGDVELGGMGGLDGELANDRVSLGGPQSIL 554 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + ++ + R A+++++W ++ Sbjct: 555 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 592 >gi|161502909|ref|YP_001570021.1| flagellar MS-ring protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864256|gb|ABX20879.1| hypothetical protein SARI_00968 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 560 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 127/572 (22%), Positives = 226/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIIVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQIGAGYPGG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN---------------------TDKKEEQSNYEINTK 343 N P + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPGNQQNAQNTAQTSTSTNSNSTGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ L+ L A+R Sbjct: 428 DTLNVVNSPFSAVDETGGELP----FWQQQSFIDQLLAAGRWLLVLLVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|260568707|ref|ZP_05839176.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40] gi|260155372|gb|EEW90453.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40] Length = 580 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYMSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|149928162|ref|ZP_01916408.1| flagellar M-ring protein FliF [Limnobacter sp. MED105] gi|149823147|gb|EDM82385.1| flagellar M-ring protein FliF [Limnobacter sp. MED105] Length = 575 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 122/576 (21%), Positives = 236/576 (40%), Gaps = 42/576 (7%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + L + + + + + I + + + N Y L+ L D I Sbjct: 17 NPITNMQQRFAKLPQKNKMGILIGVPLLIAVIASLLMWANQTSYRVLFSGLNDQDGGAIV 76 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL++ + + + G++I VPS+ V R+ LA+QGLP S SG+E D G+T Sbjct: 77 EALTQMKVPYEFNTAGTAILVPSNKVYDTRLALASQGLPK-GSVSGFEAMDN-QKLGITQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE+ R+IQSIS + +ARVH+ +P F + P+AS+++ Sbjct: 135 FQEQVNYQRALEGELVRSIQSISAVQSARVHLAIPKPSIFIREKQTPSASIVLNLFGSRT 194 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241 I HLVA+++P ++ DV+++D +G+LLT E + L+ I+ + Sbjct: 195 LSEPQINGIVHLVASSLPGMNPEDVSIVDQSGRLLTGKTQLESGLNPTQLAYTNQIEQSL 254 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRS 297 I L+ G +N R+ V A ++ + + +Y P+ RS ++S+ S Sbjct: 255 TSRIVDILSPVFGSENVRATVTANMDYSMSERTDEIYKPNGDTTQATIRSQQISESNDGS 314 Query: 298 ETSQPESAVTVEQNMPHVSDRK-----------------VPLPRSLENTDKKEEQSNYEI 340 + P+ V N P P ++ +K+ NYE+ Sbjct: 315 SNANPQGIPGVMANTPPGEAAANIGQNPQQALANGVNGGTSTPTQTNSSTRKDSTVNYEV 374 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + T K+ERLS AVVVN +T+ G + + +++ +V A G + Sbjct: 375 DKSVQYTKSQVGKIERLSAAVVVNYKTITDPKGETRQVPLTPEEITQLDSLVKQAIGFDE 434 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD + + + F + T+ + ++ + + ++ F L + Sbjct: 435 QRGDAVNVVNQAFTK---VEEETIPMWAQQETMDLAKSLGMPIGVALIAAILVFGVLRPM 491 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + +D +G P + + N + + Sbjct: 492 MKPAEVDLFDEGPELLPGQRMPLLANQ-------------VGGDNDAELLEQLQREGTLP 538 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 ++ +L + + + + A I++ W E ++ Sbjct: 539 GMNRQEKMEKLRQLAKEHPQIVASIVKNWVNGETQN 574 >gi|18182538|gb|AAL65160.1|AF453480_2 flagellar MS ring protein [Burkholderia cepacia] Length = 587 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 123/528 (23%), Positives = 218/528 (41%), Gaps = 28/528 (5%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 A + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ L Sbjct: 75 ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AA GLP S G+EL D FG++ F ++I RALEGE+ RTI+SI+ + ARVH+ Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192 Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + P+ASV + +AI +V++ VP++ +VT++D G Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LLT + L VQ ++H + I+ LA G N RS V A+L+ + Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312 Query: 276 IVYDPDSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVPLPRS 325 Y P+ +++ S+ + ++ + P++ Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQAARRACRARCRTRRRSRPPRRSSPGNGQNAPQT 372 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +D+K++ +NYE++ T ++RLS+AVVVN + + G Q + L Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A++ ++V A G + +RGD++ + + F + D+++ + Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L A+RR + + A D + L N Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLLGFEN 552 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +++ + + + A +++ W E Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586 >gi|322616962|gb|EFY13870.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618201|gb|EFY15093.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625872|gb|EFY22691.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626324|gb|EFY23134.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632739|gb|EFY29484.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639081|gb|EFY35774.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640397|gb|EFY37053.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647242|gb|EFY43741.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649910|gb|EFY46331.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322660296|gb|EFY56534.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662977|gb|EFY59184.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668162|gb|EFY64321.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674079|gb|EFY70173.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675569|gb|EFY71643.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322686714|gb|EFY82692.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195398|gb|EFZ80578.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198074|gb|EFZ83191.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323207544|gb|EFZ92492.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211017|gb|EFZ95877.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217529|gb|EGA02248.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219604|gb|EGA04088.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231551|gb|EGA15664.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235994|gb|EGA20073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240564|gb|EGA24607.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245456|gb|EGA29456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250226|gb|EGA34118.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253963|gb|EGA37787.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255510|gb|EGA39271.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262107|gb|EGA45670.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266230|gb|EGA49720.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270661|gb|EGA54102.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 560 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|261219820|ref|ZP_05934101.1| flagellar M-ring protein FliF [Brucella ceti B1/94] gi|265996839|ref|ZP_06109396.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1] gi|260918404|gb|EEX85057.1| flagellar M-ring protein FliF [Brucella ceti B1/94] gi|262551136|gb|EEZ07297.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1] Length = 580 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 316/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|261215451|ref|ZP_05929732.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya] gi|260917058|gb|EEX83919.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya] Length = 580 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|254695100|ref|ZP_05156928.1| flagellar MS-ring protein [Brucella abortus bv. 3 str. Tulya] Length = 575 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 4 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 483 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 542 ERVAAVLKQWIHETASGREAD 562 >gi|256158325|ref|ZP_05456229.1| flagellar MS-ring protein [Brucella ceti M490/95/1] gi|256252741|ref|ZP_05458277.1| flagellar MS-ring protein [Brucella ceti B1/94] Length = 575 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 316/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 4 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 483 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 542 ERVAAVLKQWIHETASGREAD 562 >gi|52428288|gb|AAU48881.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 23344] Length = 543 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 126/525 (24%), Positives = 216/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 26 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 85 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S + + AARV++ +P Sbjct: 86 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 143 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 144 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 203 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 204 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 263 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 264 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 323 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 324 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 383 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 384 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 443 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L +++ Sbjct: 444 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 500 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R +++ + + + A +++ W E Sbjct: 501 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 542 >gi|256059797|ref|ZP_05449992.1| flagellar MS-ring protein [Brucella neotomae 5K33] gi|261323777|ref|ZP_05962974.1| flagellar M-ring protein FliF [Brucella neotomae 5K33] gi|261299757|gb|EEY03254.1| flagellar M-ring protein FliF [Brucella neotomae 5K33] Length = 580 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 318/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG ++++L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIVLGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|23500860|ref|NP_700300.1| flagellar MS-ring protein [Brucella suis 1330] gi|83269941|ref|YP_419232.1| flagellar MS-ring protein [Brucella melitensis biovar Abortus 2308] gi|225628435|ref|ZP_03786469.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo] gi|237817511|ref|ZP_04596501.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A] gi|256015905|ref|YP_003105914.1| flagellar M-ring protein FliF [Brucella microti CCM 4915] gi|260166802|ref|ZP_05753613.1| flagellar MS-ring protein [Brucella sp. F5/99] gi|260544149|ref|ZP_05819970.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038] gi|260757235|ref|ZP_05869583.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870] gi|260759400|ref|ZP_05871748.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292] gi|260762643|ref|ZP_05874975.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59] gi|260883039|ref|ZP_05894653.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68] gi|261318817|ref|ZP_05958014.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94] gi|261749710|ref|ZP_05993419.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513] gi|261752953|ref|ZP_05996662.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686] gi|261756180|ref|ZP_05999889.1| flagellar M-ring protein FliF [Brucella sp. F5/99] gi|265987176|ref|ZP_06099733.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1] gi|294852976|ref|ZP_06793648.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026] gi|297250144|ref|ZP_06933845.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196] gi|38257618|sp|Q8FUS3|FLIF_BRUSU RecName: Full=Flagellar M-ring protein FliF gi|23464525|gb|AAN34305.1| flagellar M-ring protein FliF [Brucella suis 1330] gi|82940215|emb|CAJ13271.1| Flagellar FliF M-ring protein:Type III secretion system outer membrane K protein:Secretory protein YscJ/FliF [Brucella melitensis biovar Abortus 2308] gi|225616281|gb|EEH13329.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo] gi|237787266|gb|EEP61484.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A] gi|255998565|gb|ACU50252.1| flagellar M-ring protein FliF [Brucella microti CCM 4915] gi|260097420|gb|EEW81294.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038] gi|260669718|gb|EEX56658.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292] gi|260673064|gb|EEX59885.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59] gi|260677343|gb|EEX64164.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870] gi|260872567|gb|EEX79636.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68] gi|261298040|gb|EEY01537.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94] gi|261736164|gb|EEY24160.1| flagellar M-ring protein FliF [Brucella sp. F5/99] gi|261739463|gb|EEY27389.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513] gi|261742706|gb|EEY30632.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686] gi|264659373|gb|EEZ29634.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1] gi|294818631|gb|EFG35631.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026] gi|297174013|gb|EFH33377.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196] Length = 580 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|77457763|ref|YP_347268.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf0-1] gi|77381766|gb|ABA73279.1| flagellar M-ring protein [Pseudomonas fluorescens Pf0-1] Length = 595 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 116/586 (19%), Positives = 227/586 (38%), Gaps = 54/586 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + + +AR+ LAA G+ S N G+E+ DK G + FM+ Sbjct: 85 ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVTPSDGNIGFEILDKEQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ E + GK + ++ + Sbjct: 205 GQVVAIINLVATSVPELSKSQITVVDQKGNLLSDQAENAEMTMAGKQFDYSRRMESMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + QR+ ++ P+ Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTAEQFNPDQPALRSEQSV-NEQRTASNGPQ 323 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P Sbjct: 324 GVPGALSNQPPSPASAPQTTGGAAAPASMVQPGQPLVDANGQQIMDPATGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERL-SIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RL VV ++ ++ G + LA Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVSVVVDDQVKINPANGETTRAPWSADELARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ +M F + + F ++ ++ ++ Sbjct: 444 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIADIPF----YSQPWFWDIVKQVLGVLF 499 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + K G G + ND ++L + Sbjct: 500 ILVLVFGVLRPVLNNITGGGKSKELAGLGG--DMELGGMGGLDGELSNDRVSLGGPTSIL 557 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + ++ + R A+++++W ++ Sbjct: 558 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 595 >gi|2916780|emb|CAA11947.1| flagellar basal-body MS-ring protein [Sinorhizobium meliloti] Length = 557 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 267/552 (48%), Positives = 356/552 (64%), Gaps = 4/552 (0%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRRSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI RTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + + N L +VQ +Q Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + +KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL E+ KIVS+A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + M++L+R+ +INAL F+ LV + G+ L R G + Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSH--SRNLQSRINSYVSKQSDLRLLHMIEI 537 L P S A D + ++ N V + + RL M+EI Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNLGDEAGFNRRVKEGPERRLARMVEI 539 Query: 538 NEERFAKILRKW 549 +EER AKILRKW Sbjct: 540 SEERAAKILRKW 551 >gi|189023215|ref|YP_001932956.1| flagellar MS-ring protein [Brucella abortus S19] gi|254691603|ref|ZP_05154857.1| flagellar MS-ring protein [Brucella abortus bv. 6 str. 870] gi|254698196|ref|ZP_05160024.1| flagellar MS-ring protein [Brucella abortus bv. 2 str. 86/8/59] gi|254699268|ref|ZP_05161096.1| flagellar MS-ring protein [Brucella suis bv. 5 str. 513] gi|254702392|ref|ZP_05164220.1| flagellar MS-ring protein [Brucella suis bv. 3 str. 686] gi|254711225|ref|ZP_05173036.1| flagellar MS-ring protein [Brucella pinnipedialis B2/94] gi|254731641|ref|ZP_05190219.1| flagellar MS-ring protein [Brucella abortus bv. 4 str. 292] gi|256030146|ref|ZP_05443760.1| flagellar MS-ring protein [Brucella pinnipedialis M292/94/1] gi|256256791|ref|ZP_05462327.1| flagellar MS-ring protein [Brucella abortus bv. 9 str. C68] gi|189021789|gb|ACD74510.1| flagellar M-ring protein FliF [Brucella abortus S19] Length = 575 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 4 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 483 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 542 ERVAAVLKQWIHETASGREAD 562 >gi|16760913|ref|NP_456530.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25304719|pir||AB0752 flagellar basal-body M-ring protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503210|emb|CAD05717.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 560 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 125/572 (21%), Positives = 226/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSTAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+ Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|119899006|ref|YP_934219.1| flagellar MS-ring protein [Azoarcus sp. BH72] gi|119671419|emb|CAL95332.1| flagellar M-ring protein [Azoarcus sp. BH72] Length = 562 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 134/569 (23%), Positives = 229/569 (40%), Gaps = 40/569 (7%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L Q ++ +L + + A+ + + + L + A + P Y L+ L+ D ++ Sbjct: 19 RLQQVVQNINALSMRQKIAGAAALALAVALIVGALMWNRQPDYGVLFSNLDERDGGQVIA 78 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL + N+ +R+S NG SI VP V + R+ LAA GLP G+EL D G++ F Sbjct: 79 ALQQQNVPYRMSPNGLSILVPQEQVHELRLRLAAAGLPRGGL-VGFELMD-TQKLGVSQF 136 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--S 183 +++ RALEGE++RTIQSI+ + AARVH+ MP +F + +PTASVM+ Sbjct: 137 NEQVNYQRALEGELSRTIQSIAAVAAARVHLAMPKQTAFLRDDQKPTASVMVTLRPGRVL 196 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHE 240 I HLV+++VP + V ++D G+LLT + + L V+ ++ Sbjct: 197 DANQVAGIVHLVSSSVPRMVESGVNIIDQNGELLTTKNDPLRQTGLDATQLEYVKEVEAG 256 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK-DAQRSET 299 I L +G +NFR+ V A+++ + + + P+ +++IR + + + Sbjct: 257 FIRRIENILQPMVGKNNFRAQVAADVDFNQVEQTAETFKPNPSPDQAIRSQQTTEETNRQ 316 Query: 300 SQPESAVTVEQNMPHVSDRKV---------PLPRSLENTDKKEEQSNYEINTKSIATTHD 350 P+ N P V + T + NYE++ Sbjct: 317 PGPQGVPGALSNQPPVPATAPITTPPVGPNQAGAAQTGTTSRSAVLNYEVDRTIQHVKQS 376 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +L+RLS+AVVVN T G++ D +A IN +V A G N RGDTI + S Sbjct: 377 LGQLKRLSVAVVVNHRTETLPNGQTQTVPLTDEEVARINNLVREAVGYNPARGDTINVAS 436 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F V + + L+ + L F + L R + Sbjct: 437 SPFAGIGP--EPAVPLWKDPEMIELGKEGFKYLLVALAVLFAYFAIIRPLMRTVMPPPPE 494 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P + + + R Sbjct: 495 PEVAEAGEPGEPGFEGEEDVEVTLSGAA---------------------QANTYEAKLAR 533 Query: 531 LLHMIEINEERFAKILRKWARSEIEDRYT 559 + + + + A ++R+W E R + Sbjct: 534 ARELAKEDPKMVANLIREWMGLNEEGRKS 562 >gi|150395469|ref|YP_001325936.1| flagellar MS-ring protein [Sinorhizobium medicae WSM419] gi|150026984|gb|ABR59101.1| flagellar M-ring protein FliF [Sinorhizobium medicae WSM419] Length = 557 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 266/552 (48%), Positives = 356/552 (64%), Gaps = 4/552 (0%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+ +++ LA +V I + A +VN P ++ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQGKLIALAVAGIVAIGFVLGAGVYVNRPSFETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + + N L +VQ +Q Sbjct: 180 ATVGRSAAASIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPANSALNQSLGVVQNVQT 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + +S + KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPTGGAGQQSSDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL + G ADQ KID+YL ++ KIV++A GI+ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLVQMQKIVASAAGIDPGRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + M++L+R+ +INAL F+ LV + G+ L R G + Sbjct: 420 DQAVPGPGMMEVLTRNIGGIINALAFVAVAFLVVWFGMRPLARQMGFGGQSGQLAGEAAG 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSH--SRNLQSRINSYVSKQSDLRLLHMIEI 537 L P S A D + ++ N V + + RL M+EI Sbjct: 480 LELPDFSPAAAGAGGALMEGFGSDFGFDGGDDLLNLGDEAGFNRRVKEGPERRLARMVEI 539 Query: 538 NEERFAKILRKW 549 +EER AKILRKW Sbjct: 540 SEERAAKILRKW 551 >gi|161621189|ref|YP_001595075.1| flagellar MS-ring protein [Brucella canis ATCC 23365] gi|161338000|gb|ABX64304.1| flagellar M-ring protein FliF [Brucella canis ATCC 23365] Length = 580 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMSAILYMSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|320325114|gb|EFW81183.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. B076] Length = 594 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 120/587 (20%), Positives = 220/587 (37%), Gaps = 56/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSGTG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P + Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + + V Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 G + + L LR + K + G + ND ++L Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLDGELSNDRVSLGGPQSI 555 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|220935138|ref|YP_002514037.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996448|gb|ACL73050.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7] Length = 552 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 119/565 (21%), Positives = 224/565 (39%), Gaps = 28/565 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + L + L R + L + + L + ++ P Y LY L + Sbjct: 3 NSMAVLSNQVRGFGRLPMERQIGLIVALAAAVALVSSLFMWMTRPSYTVLYPNLAEQESG 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +++ AL NI +R+ +++VP+ + AR+ LA +GLP ++ G+EL ++ G Sbjct: 63 QVAEALGRHNIPYRLDSATGAVTVPARHLHDARLKLATEGLPR-ATGFGFELLEQDQGLG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + ++ RA+EGE+AR+I ++S + +ARVH+ +P F + ++P+ASV++ Sbjct: 122 TSRLIENARYHRAIEGELARSIATLSSVESARVHLALPAQSVFVRDRSKPSASVLVNLYA 181 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236 I HLVA++VP+L+ VTV+D G+LLT + L + Sbjct: 182 GRTLDESRIAGIVHLVASSVPDLEPERVTVVDQRGRLLTQPAGDVDGVMASTQQLDFTRR 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ I L LG D R+ V A+L+ + +DP+ V RS ++S+D R Sbjct: 242 MEESYVRRIMDILTPILGADAVRAQVAADLDFSRIERTTEAFDPEFSVVRSEQISEDESR 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSL------ENTDKKEEQSNYEINTKSIATTHD 350 N P + + + NYE++ Sbjct: 302 GGGMM--GVPGALTNQPPEAGVIAEEGNGANGQAQVPGSSSRRTVRNYEVDRTVSHIREA 359 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L RLSIAVVV+ G + + I +V A G ++RRGD+I + + Sbjct: 360 PGGLRRLSIAVVVDHKEERNEAGELERVPFTEQEMERITTLVREAVGFDARRGDSINVIN 419 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + + + + ++ ++ +++ + L + Sbjct: 420 ASFRPVEALELPPEPPIWQE---PWVVDLAKTILAVIMVIVLALTVVRPLLKGL------ 470 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 E G + A+ G + + + L Q + L + Sbjct: 471 -AERGAAARREDQLGHLALPEGELGEEQLRLGQQPQVQGA----LPGPNTKKNYEDQLDS 525 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 M+ + +R A++++ W S+ Sbjct: 526 ARGMVREDPKRVAQLMKTWIASDGA 550 >gi|289627784|ref|ZP_06460738.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651625|ref|ZP_06482968.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487835|ref|ZP_07005875.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157560|gb|EFH98640.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866444|gb|EGH01153.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986489|gb|EGH84592.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011063|gb|EGH91119.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 594 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 118/587 (20%), Positives = 219/587 (37%), Gaps = 56/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P + Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + + V Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 G + + L LR + K + G + ND ++L Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|330876010|gb|EGH10159.1| flagellar MS-ring protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967111|gb|EGH67371.1| flagellar MS-ring protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 594 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 120/587 (20%), Positives = 222/587 (37%), Gaps = 56/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPH-----------------------------------VSDRKVPLPRSLEN 328 N P P Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + + V Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYTQPWFWD-------IVKQAV 495 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 G + + L LR + N + K + G + ND ++L Sbjct: 496 GVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|67641495|ref|ZP_00440272.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4] gi|121601133|ref|YP_994240.1| flagellar MS-ring protein [Burkholderia mallei SAVP1] gi|124383455|ref|YP_001028106.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10229] gi|126448962|ref|YP_001082916.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10247] gi|161579508|ref|YP_104753.2| flagellar MS-ring protein [Burkholderia mallei ATCC 23344] gi|167004331|ref|ZP_02270091.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20] gi|254175223|ref|ZP_04881884.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399] gi|254201855|ref|ZP_04908219.1| flagellar M-ring protein FliF [Burkholderia mallei FMH] gi|254207184|ref|ZP_04913535.1| flagellar M-ring protein FliF [Burkholderia mallei JHU] gi|254359688|ref|ZP_04975959.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280] gi|121229943|gb|ABM52461.1| flagellar M-ring protein FliF [Burkholderia mallei SAVP1] gi|124291475|gb|ABN00744.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10229] gi|126241832|gb|ABO04925.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10247] gi|147747749|gb|EDK54825.1| flagellar M-ring protein FliF [Burkholderia mallei FMH] gi|147752726|gb|EDK59792.1| flagellar M-ring protein FliF [Burkholderia mallei JHU] gi|148028902|gb|EDK86834.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280] gi|160696268|gb|EDP86238.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399] gi|238522438|gb|EEP85882.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4] gi|243060331|gb|EES42517.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20] Length = 598 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 126/525 (24%), Positives = 216/525 (41%), Gaps = 21/525 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 81 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S + + AARV++ +P Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 198 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L ALRR P GL D L +++ Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 555 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R +++ + + + A +++ W E Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597 >gi|62317964|ref|YP_223817.1| flagellar MS-ring protein [Brucella abortus bv. 1 str. 9-941] gi|68067522|sp|O52069|FLIF_BRUAB RecName: Full=Flagellar M-ring protein gi|62198157|gb|AAX76456.1| FliF, flagellar M-ring protein [Brucella abortus bv. 1 str. 9-941] Length = 580 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 207/561 (36%), Positives = 316/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E D++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKMDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|28869162|ref|NP_791781.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str. DC3000] gi|213967561|ref|ZP_03395709.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1] gi|301385734|ref|ZP_07234152.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato Max13] gi|302059423|ref|ZP_07250964.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato K40] gi|302134812|ref|ZP_07260802.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852402|gb|AAO55476.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str. DC3000] gi|213927862|gb|EEB61409.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1] Length = 594 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 120/587 (20%), Positives = 222/587 (37%), Gaps = 56/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPH-----------------------------------VSDRKVPLPRSLEN 328 N P P Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + + V Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 G + + L LR + N + K + G + ND ++L Sbjct: 496 GVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|315121860|ref|YP_004062349.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495262|gb|ADR51861.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 560 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 420/560 (75%), Positives = 480/560 (85%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI+DQLLQFFKS SLGR R+ I+ +V+ I L +AA FF++SP YD+LYVKLE SDV Sbjct: 1 MAIIDQLLQFFKSAMSLGRMRLFIVGAVMFASIALLLAASFFMSSPIYDSLYVKLEASDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+ISVALSEA+IDFRI+ NGSSI VPS ++ KAR+ LA QGLP+SS+NSGYELFDKVNSF Sbjct: 61 NKISVALSEASIDFRIAGNGSSILVPSHLLSKARLRLAEQGLPNSSNNSGYELFDKVNSF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQEITRVRALEGEI+RTIQ ISGIVAARVHIVMPDMGSFR+IGA+PTASVM+R + Sbjct: 121 GLTSFMQEITRVRALEGEISRTIQDISGIVAARVHIVMPDMGSFRRIGAKPTASVMVRVV 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 NPSVYKSAEAIRHLVAAAVP LD+ DVTVLDSTGKLL ANE+ERNI GKSL IVQA+QHE Sbjct: 181 NPSVYKSAEAIRHLVAAAVPGLDISDVTVLDSTGKLLVANEIERNIFGKSLGIVQAVQHE 240 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IEMNINKALA FLG+DNFRSAV+AELN D QQI+EIVYDPDS+VERS+RLSKD QRSE+ Sbjct: 241 IEMNINKALAPFLGIDNFRSAVIAELNTDIQQIKEIVYDPDSRVERSVRLSKDVQRSESH 300 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 Q ESAVTVEQNMPHVS++ PR+LENTDKKEEQSNYEINTKSI+TTH+NYKLERLSIA Sbjct: 301 QQESAVTVEQNMPHVSEKNATSPRALENTDKKEEQSNYEINTKSISTTHNNYKLERLSIA 360 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVNKGRL E+LG S +Q K+DSYLAEIN+IVSAATGINS RGD ITITSMDFL++QL N Sbjct: 361 VVVNKGRLMEMLGPSMEQSKVDSYLAEINRIVSAATGINSIRGDNITITSMDFLDDQLLN 420 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 S TVQVSFMDILSR+F+ +INAL FL LL+ G+H LR +NID K+ E+ KS L Sbjct: 421 SSTVQVSFMDILSRNFSIIINALFFLTLVLLMALFGVHVLRGFNNIDLIKRKEMEAKSAL 480 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 S P I+S T LM +D++A DS QDI S + N QS IN+YV++QSD RLL MIEINEE Sbjct: 481 STPSIASTAETTLMSSDDMASDSFRQDILSRNNNFQSDINNYVAEQSDRRLLRMIEINEE 540 Query: 541 RFAKILRKWARSEIEDRYTQ 560 RF+KI+RKW RSEIE RYTQ Sbjct: 541 RFSKIIRKWVRSEIESRYTQ 560 >gi|241203091|ref|YP_002974187.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856981|gb|ACS54648.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 563 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 294/564 (52%), Positives = 393/564 (69%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGTSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + + N +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT +YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQTKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ LV ++GL L R + + + Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFLVVWMGLRPLVRSVSGNGSSAAFGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P S A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA E Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563 >gi|331017004|gb|EGH97060.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 594 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 120/587 (20%), Positives = 222/587 (37%), Gaps = 56/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGIDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPH-----------------------------------VSDRKVPLPRSLEN 328 N P P Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + + V Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 G + + L LR + N + K + G + ND ++L Sbjct: 496 GVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|71734724|ref|YP_275541.1| flagellar MS-ring protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555277|gb|AAZ34488.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. phaseolicola 1448A] Length = 594 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 118/587 (20%), Positives = 219/587 (37%), Gaps = 56/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P + Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + + V Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSIERAEVLPEASFYSQPWFWD-------IVKQAV 495 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 G + + L LR + K + G + ND ++L Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|170748099|ref|YP_001754359.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831] gi|170654621|gb|ACB23676.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM 2831] Length = 546 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 194/560 (34%), Positives = 309/560 (55%), Gaps = 17/560 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + L + + + LG R++ L V L + ++++ P + LY L DV Sbjct: 1 MPGREHLQKLWTNILDLGPRRLIALGLVGLTVFLAVGLGAYYLSRPLRETLYSGLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +R+ AL +A I F IS +G+S+ V +AR+ LA +GLP S +GYELF+ + S Sbjct: 61 SRMGAALKDAGIPFDISADGTSVLVSYGQTAQARMLLAEKGLPQSG-KAGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ+ITRVRALEGEIARTIQ++ + AARVHIVMPD GSFR+ +ASV++R Sbjct: 120 GLTSFMQDITRVRALEGEIARTIQTLKSVKAARVHIVMPDPGSFRREQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 + A AIR LVAAA+P + VTVL++ G +L A + L+ + Q++ Sbjct: 180 PANDATVAPAIRQLVAAAIPGMKPDKVTVLNTDGTVLLAGDDATTAPAGRLANLEQSVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI+ NI + L +LG +NF +VVA LN D + E +++PD KVERS+R K++ S+ Sbjct: 240 EIQDNIRRTLTPYLGPNNFEVSVVARLNTDKTKTDETIFNPDQKVERSLRTIKESDSSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 P+ T +QN+P R S + ++EE +N+EI++K++ T D Y ++ LS+ Sbjct: 300 RAPQKPTTAQQNLPDQRVRSEGAENSSAESQRREELTNFEISSKTVQTVSDGYSIKTLSV 359 Query: 360 AVVVNKGRLTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 AV+VN+ RL + G + +D +AEI ++V++A G+N RGD + + ++ F++ Sbjct: 360 AVLVNRSRLEALAGGAKGGTAPPLDPQVAEIEQLVTSAAGVNRARGDQLKVAAVSFIDEG 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + F D+L R T+INA L+ L+ + GL N A+ E G + Sbjct: 420 QPLAPAPALGFTDVLMRQSGTLINAATILIVGCLLIWFGLRPAV---NAILARPAETGTE 476 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 L+ P S + S+ + S +L + ++++ +L ++E+ Sbjct: 477 LALATPDAGSGLDG----------PSAEKGGTSPEPSLIEDLTEHMARSPIRKLEQLVEL 526 Query: 538 NEERFAKILRKWARSEIEDR 557 +EE+ A IL++W E R Sbjct: 527 DEEQVANILKQWLTREEVAR 546 >gi|329901251|ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] gi|327549183|gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 123/567 (21%), Positives = 222/567 (39%), Gaps = 43/567 (7%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 S R L+L + I + + P Y L+ D I L + N+ Sbjct: 16 SFAESQGGRNLLLMLGAAIVIAVMAGVWMWSQQPDYRVLFSNFTDRDGGAIVTQLQQMNV 75 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ ++ G +I VP+ V AR+ +AA GLP N G+EL + G++ F++++ Sbjct: 76 PYKFAEGGGAILVPADQVHDARLRIAAMGLPK-GGNVGFELM-ENQKLGVSQFLEQVNFQ 133 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190 RALEGE+AR++QSI + +ARVH+ MP F + +PTASV++ + A Sbjct: 134 RALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLNLNPGRSLSEQQVSA 193 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINK 247 I HLVA++VP+L G+++V+D G LL+ G L +Q +Q I I Sbjct: 194 IVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQEVQQNIVRRIES 253 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--TSQPESA 305 + +G +N R+ A+++ T + Y P+S +S S+ + S+ Sbjct: 254 IITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSSESQGSNPGAGGV 313 Query: 306 VTVEQNMPHVS------------------DRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 N P + + +K+ NYE++ Sbjct: 314 PGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMTVNYEVDKTVRYV 373 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++R+S+AVVVN ++T+ G+ ++ +I +V A G N RGDT+ Sbjct: 374 QQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEAMGFNKDRGDTLN 433 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F V + + + + L+ + L + F L + + N Sbjct: 434 VVNSAFAGVPKEVFPEVPIWKRPEMIQLAKELGKYLLGGIALLYLFFGVLRPMLKKFNTP 493 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 K V + +S++ +Q+ Sbjct: 494 QPKIRAVVDDEDDEAETPEMRAMHAAERTTEVPAESASMA----------------YQQN 537 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 + + + + A I++ W Sbjct: 538 LDLAKQLAKDDPKVVANIVKNWVSGNE 564 >gi|167034925|ref|YP_001670156.1| flagellar MS-ring protein [Pseudomonas putida GB-1] gi|166861413|gb|ABY99820.1| flagellar M-ring protein FliF [Pseudomonas putida GB-1] Length = 592 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 119/584 (20%), Positives = 232/584 (39%), Gaps = 57/584 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ + + R + L + + + A + P Y LY L D ++ L+ Sbjct: 27 FLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 87 ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245 AI +LVA +VP LD VTV+D G LL+ + GK + ++ + + Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSSLTQAGKQFDYSRRVESMLTQRV 266 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG D +++ V A+L+ + ++PD RS + + + S + P+ Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325 Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331 N P + + + Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPASAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINK 390 ++ N+E++ T ++ RLS+AVVV+ + G + LA + Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKLDPATGDATRAPWAAEDLARFTR 445 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V A G ++ RGD++T+ ++ F ++ + F ++ ++ +V L Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 ++ F L + + S G + ND ++L + Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----SDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + ++ + R A++++ W ++ Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592 >gi|320329373|gb|EFW85366.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330880568|gb|EGH14717.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 594 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 118/587 (20%), Positives = 219/587 (37%), Gaps = 56/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P + Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + + V Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 G + + L LR + K + G + ND ++L Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLDGELSNDRVSLGGPQSI 555 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|325918317|ref|ZP_08180454.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas vesicatoria ATCC 35937] gi|325535457|gb|EGD07316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas vesicatoria ATCC 35937] Length = 574 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 118/568 (20%), Positives = 231/568 (40%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F+I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPFKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVS--DSSTSAT 312 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + + LV V L + F + R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A K + G P ++ DN + D + ++ I + + Sbjct: 489 VTAVKDKERGAGNDGTPQS---ADVRMVNEDNDLMPGLEDDTAQIGQEKKTPIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +R+ ++ + +R A++++ W SE Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|148558201|ref|YP_001258009.1| flagellar MS-ring protein [Brucella ovis ATCC 25840] gi|148369486|gb|ABQ62358.1| flagellar M-ring protein FliF [Brucella ovis ATCC 25840] Length = 568 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 208/556 (37%), Positives = 317/556 (57%), Gaps = 4/556 (0%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + LG +++ L V + + ++ P Y+ LYV L DVNR+ +A Sbjct: 2 IEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLA 61 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GLTSFM Sbjct: 62 LGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFM 120 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 QEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA + Sbjct: 121 QEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAE 180 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNI 245 SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + ++ +I Sbjct: 181 SAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSI 240 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ ++A Sbjct: 241 RKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNA 300 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIAVV+++ Sbjct: 301 TGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQ 360 Query: 366 GRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ + V Sbjct: 361 ARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPV 420 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + D L R + NAL L L+ + GL L R N+ A ++ P Sbjct: 421 SAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATP 480 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + + + S + + + LRL MIE++EER A Sbjct: 481 NFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAA 539 Query: 545 ILRKWARSEIEDRYTQ 560 +L++W R Sbjct: 540 VLKQWIHETASGREAD 555 >gi|285018180|ref|YP_003375891.1| flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans GPE PC73] gi|283473398|emb|CBA15903.1| probable flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans] Length = 569 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 121/567 (21%), Positives = 227/567 (40%), Gaps = 29/567 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ +F SL TR + L ++I V + + F+ P Y LY L+ + Sbjct: 13 EKAGAWFDRLQSLQITRRIGLMAMIAVAVAAGLFVFFWSQKPDYTPLYTGLDEKGTAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F++ + +I+VP + AR+ LA GL SS N G+E+ +K FG++ Sbjct: 73 DLLRTAQIPFKLDPSTGAITVPQEKLYDARLKLAGSGLTDSSGNMGFEVMEKDPGFGVSQ 132 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182 F++ ALE E+ARTI S+ + ARVH+ +P +F + +ASV++ Sbjct: 133 FVENARYQHALETELARTIASLRPVREARVHLAIPKPSAFTRQREAASASVVLELRGGNT 192 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI ++VA+++P+L VTV+D +G++LT + + ++ + Sbjct: 193 LERNQVDAIVNMVASSIPDLSPNRVTVVDQSGRMLTIADPNSDAALNAAQFDQIRRQESS 252 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ D RS ++S + Sbjct: 253 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGDPPKLRSEQVS--DSNTSKG 310 Query: 301 QPESAVTVEQNMPHVSDRKV-------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 P+ N P + + K NYE++ T Sbjct: 311 GPQGVPGATSNSPGATPTGQPAAAGTPAAAAGANQQAANPTESSKSATRNYELDRTLQHT 370 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +++R+S+AV+V+ G+ +Q + L I +V A G N+ RGDT++ Sbjct: 371 RQPAGRIKRVSVAVLVDHVPRPGPKGKMVEQALSAAELTRIEGLVKQAVGFNAERGDTVS 430 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F+ + + + ++ L + F L R Sbjct: 431 VMNAPFVHEATETTDKPSWWQDPR----VMSGLRMVLGAAVVLALLFGVLRPALRQIAGP 486 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 G + ++ + N L S +D S + + I + + Sbjct: 487 APAAGAKDKDNATPHDAKL-----SMLEDGNPMLQSLGEDTASIAGSGNPAIALPDAYEE 541 Query: 528 DLRL-LHMIEINEERFAKILRKWARSE 553 LRL ++ + +R A++++ W SE Sbjct: 542 RLRLAREAVKQDSKRVAQVVKGWVASE 568 >gi|148546737|ref|YP_001266839.1| flagellar MS-ring protein [Pseudomonas putida F1] gi|148510795|gb|ABQ77655.1| flagellar M-ring protein FliF [Pseudomonas putida F1] Length = 592 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 57/584 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ + + R + L + + + A + P Y LY L D ++ L+ Sbjct: 27 FLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 87 ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245 AI +LVA +VP LD VTV+D G LL+ + GK + ++ + + Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRV 266 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG D +++ V A+L+ + ++PD RS + + + S + P+ Sbjct: 267 HNILLPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325 Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331 N P + + + Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINK 390 ++ N+E++ T ++ RLS+AVVV+ + G + LA + Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARFTR 445 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V A G ++ RGD++T+ ++ F ++ + F ++ ++ +V L Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 ++ F L + + G + ND ++L + Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----PDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + ++ + R A++++ W ++ Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592 >gi|306845426|ref|ZP_07478000.1| flagellar M-ring protein FliF [Brucella sp. BO1] gi|306274169|gb|EFM55985.1| flagellar M-ring protein FliF [Brucella sp. BO1] Length = 575 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 207/561 (36%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 4 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA+I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEADIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEIT VRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITHVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALITASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNANRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 483 EVAMPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 542 ERVAAVLKQWIHETASGREAD 562 >gi|313497796|gb|ADR59162.1| FliF [Pseudomonas putida BIRD-1] Length = 592 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 57/584 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ + + R + L + + + A + P Y LY L D ++ L+ Sbjct: 27 FLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 87 ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETT 146 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245 AI +LVA +VP LD VTV+D G LL+ + GK + ++ + + Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRV 266 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG D +++ V A+L+ + ++PD RS + + + S + P+ Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325 Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331 N P + + + Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINK 390 ++ N+E++ T ++ RLS+AVVV+ + G + LA + Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARFTR 445 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V A G ++ RGD++T+ ++ F ++ + F ++ ++ +V L Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 ++ F L + + G + ND ++L + Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----PDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + ++ + R A++++ W ++ Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592 >gi|161610775|ref|NP_946615.2| flagellar MS-ring protein [Rhodopseudomonas palustris CGA009] Length = 538 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 137/551 (24%), Positives = 233/551 (42%), Gaps = 21/551 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQNLLGFLKGLGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + ++G+ + VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQGIPFEMRNDGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244 AIRHLVA+AV L V+++D G+LL S A + + Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQ 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +++ +G R V A+ + + +DP+ +V RS + ++ + TS + Sbjct: 240 IEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SAATSAADG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VTV +P + + + + + K EE +NYEI+ + + ++ RLS+AV+V+ Sbjct: 298 QVTVNNELPGAN--QGQGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G + L I +V +A G + +RGD I + ++ F E Sbjct: 356 GAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPE 415 Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 +I V + L+V F+ + L + + GG L+ Sbjct: 416 PAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRILAAEPAPEAAGGLPALA 475 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + I D S +++ V QS R+ + E N Sbjct: 476 DGTVP-----------QIGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNE 524 Query: 542 FAKILRKWARS 552 A I+R+W Sbjct: 525 TAAIIRQWLAE 535 >gi|104782821|ref|YP_609319.1| flagellar MS-ring protein [Pseudomonas entomophila L48] gi|95111808|emb|CAK16532.1| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila L48] Length = 592 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 118/584 (20%), Positives = 236/584 (40%), Gaps = 57/584 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ + + R + L + + + A + P Y LY L D ++ L+ Sbjct: 27 FLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLAS 86 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 87 ADIPYHVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETT 146 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245 AI +LVA +VP LD VTV+D G LL+ + ++ GK + ++ + + Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALSMAGKQFDYSRRMEGLLTQRV 266 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG D +++ V A+++ + ++PD RS + + + S + P+ Sbjct: 267 HNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNEQRAS-SQGPQGV 325 Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331 N P R+ + + Sbjct: 326 PGALSNQPPAGASAPENARAAATPAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINK 390 ++ N+E++ T +L RLS+AVVV+ + G + LA + Sbjct: 386 QQSTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKLDAASGEATRTPWGAEDLARFTR 445 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V A G ++ RGD++T+ ++ F ++ + F ++ ++ ++ L Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGDELVDIPF----YSQPWFWDIVKQVLGVLFIL 501 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 ++ F L + + + G + ND ++L + Sbjct: 502 VLVFGVLRPVLTNITGGGKQAA-----TDSDMELGGMIGLDGELANDRVSLGGPTSILLP 556 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + ++ + R A+++++W ++ Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKEWINADE 592 >gi|122065185|sp|Q8YDM4|FLIF_BRUME RecName: Full=Flagellar M-ring protein Length = 580 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 207/561 (36%), Positives = 317/561 (56%), Gaps = 4/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL++ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 547 ERVAAVLKQWIHETASGREAD 567 >gi|192289867|ref|YP_001990472.1| flagellar MS-ring protein [Rhodopseudomonas palustris TIE-1] gi|192283616|gb|ACE99996.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris TIE-1] Length = 538 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 137/551 (24%), Positives = 233/551 (42%), Gaps = 21/551 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQNLLGFLKGLGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + ++G+ + VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQGIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244 AIRHLVA+AV L V+++D G+LL S A + + Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQ 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +++ +G R V A+ + + +DP+ +V RS + ++ + TS + Sbjct: 240 IEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SAATSAADG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VTV +P + + + + + K EE +NYEI+ + + ++ RLS+AV+V+ Sbjct: 298 QVTVNNELPGAN--QGQGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G + L I +V +A G + +RGD I + ++ F E Sbjct: 356 GAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPE 415 Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 +I V + L+V F+ + L + + GG L+ Sbjct: 416 PAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRILAAEPAPEAAGGLPALA 475 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + I D S +++ V QS R+ + E N Sbjct: 476 DGTVP-----------QIGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNE 524 Query: 542 FAKILRKWARS 552 A I+R+W Sbjct: 525 TAAIIRQWLAE 535 >gi|26991058|ref|NP_746483.1| flagellar MS-ring protein [Pseudomonas putida KT2440] gi|24986091|gb|AAN69947.1|AE016633_5 flagellar basal-body M-ring protein FliF [Pseudomonas putida KT2440] Length = 592 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 57/584 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ + + R + L + + + A + P Y LY L D ++ L+ Sbjct: 27 FLENISQMPMLRQIGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 87 ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245 AI +LVA +VP LD VTV+D G LL+ + GK + ++ + + Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRV 266 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG D +++ V A+L+ + ++PD RS + + + S + P+ Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325 Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331 N P + + + Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINK 390 ++ N+E++ T ++ RLS+AVVV+ + G + LA + Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMARLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARFTR 445 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V A G ++ RGD++T+ ++ F ++ + F ++ ++ +V L Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 ++ F L + + G + ND ++L + Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----PDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + ++ + R A++++ W ++ Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592 >gi|209884352|ref|YP_002288208.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5] gi|209872548|gb|ACI92344.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5] Length = 537 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 122/551 (22%), Positives = 226/551 (41%), Gaps = 22/551 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + SLG R+ + +V + + F V +P LY L D + Sbjct: 1 MQGLVSFIRSLGAARLAAMLAVAMALLGFFGFVILRVTAPQMITLYTDLGYDDAAGVIKE 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I + + ++G+ I VP V + R+ LA GLP S GYE+FDK + G TSF+ Sbjct: 61 LDRQGIPYEMKNDGAIIMVPKDKVTRLRMKLAESGLPK-GSGVGYEIFDKSETLGSTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q + +RALEGE+ARTI++I I RVH+V+P+ F + P+A++++R + Sbjct: 120 QNVNHLRALEGELARTIKAIDRIQGVRVHLVLPERPLFSREKPEPSAAIVVRVRGALEAQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244 AIRHLVA++V L V+++D G+LL + + A ++ + Sbjct: 180 QVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSGDANGMGDVGADERRVAYENRLRKQ 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + + +G R + A+ + + +DP+ +V RS + +++ + Sbjct: 240 IESIVTSVVGGGRARVQLSADFDYNKVTETSDKFDPEGRVLRSSQTREESSATSNGLNGQ 299 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N + ++ + K EE +NYEI+ + + +++R+S+AV+V+ Sbjct: 300 V--TVNNEMPGNQQQNAANAGKDQAKKSEEINNYEISRTTKTEVTEAGRVQRMSVAVLVD 357 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G + L I +V +A G + RGD + + ++ F + Sbjct: 358 GVYSRNEKGDQVYAPRSQEDLERIATLVRSAIGFDKARGDQVEVVNLRFADAPSAIPLPD 417 Query: 425 QVSF---MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + I V + +++V F+ + L + +D + Sbjct: 418 SNGWLSVFQFTKDDVMYFIELGVMSLLSIVVVFMVVRPLVKRVLAEDVPLANAAPALPEA 477 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P P +A+ + +++ V QS R+ + + N Sbjct: 478 PQP--------------VAVAGPVHTAATAQMIDVAQVQGQVHAQSVHRVGELADRNPNE 523 Query: 542 FAKILRKWARS 552 I+R+W Sbjct: 524 TVAIIRQWLTE 534 >gi|227820842|ref|YP_002824812.1| flagellar MS-ring protein [Sinorhizobium fredii NGR234] gi|227339841|gb|ACP24059.1| flagellar M-ring protein FliF [Sinorhizobium fredii NGR234] Length = 559 Score = 375 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 268/554 (48%), Positives = 365/554 (65%), Gaps = 6/554 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + DQ F K+ ++LG+++++ LA +V I + A +VN P Y+ LYV LE SDV Sbjct: 1 MNLFDQFSTFTKNLSNLGQSKLIALAVAGIVAIGFVLGAAIYVNKPAYETLYVGLERSDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+AL+EAN+DF + +G SI VP M GKAR+ LA +GLP SS+N+GYELFD V S Sbjct: 61 TQISIALAEANLDFEVGSDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239 +A +IRHLVA++VP LD+ DVT+LDSTG+LL + + N L +VQ +Q Sbjct: 180 ATVGRGAASSIRHLVASSVPGLDIDDVTILDSTGQLLASGDDPANSALNQSLGVVQNVQT 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++E I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTASLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 QP++A TV+QN+P + R +S + KKEEQ+NYEIN+K+IAT ++Y +ERLSI Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSNDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN+GRL ++G ADQ KID+YL ++ KIV++A G+++ RGD +T+ +MDF+E QL Sbjct: 360 AVVVNRGRLAAMVGEGADQAKIDAYLQDMQKIVASAAGVDTNRGDVVTLNAMDFVETQLL 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + M++L+R+ +IN+L F++ LV +LG+ L R G + Sbjct: 420 DQAVAGPGVMEMLTRNLGGIINSLAFILVAFLVVWLGMRPLARQMGFGGQSGHLEGEGAG 479 Query: 480 LSPPPISS----AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L P S A LM + D + + + N V + + RL M+ Sbjct: 480 LELPDFSPAGASAAGGALMEGFGSDFGFDSTDDLLNISDEGNGFNRRVKEGPERRLARMV 539 Query: 536 EINEERFAKILRKW 549 EI+EER AKILRKW Sbjct: 540 EISEERAAKILRKW 553 >gi|182679604|ref|YP_001833750.1| flagellar MS-ring protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635487|gb|ACB96261.1| flagellar M-ring protein FliF [Beijerinckia indica subsp. indica ATCC 9039] Length = 547 Score = 375 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 195/556 (35%), Positives = 308/556 (55%), Gaps = 11/556 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +Q+ + + + LG R++ LA V + + A +F++ P + LY L+ DV Sbjct: 1 MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI+ AL EA+I F ++ +G+S+ V +AR+ LA +GLP +S N+G ELFDK+ S Sbjct: 61 SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIVMPD GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRME 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + +A+AIRHLVA+AVP + + +VTVL++ G LL + + + + +A+ Sbjct: 180 SNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI K L +LG+ NF+ +V A LN D +Q E +Y+PDSKVERSI +++ Q S+ Sbjct: 240 EIIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S +S +VE+N+P + R +S E + K++E +NYEI++K + T Y ++ LS+ Sbjct: 300 STVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ L LG + + EI +V++A G + RGD + I+++DF++ Sbjct: 360 AVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSHE 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 S ++ R ++NA LV +L+ + GL A K + Sbjct: 420 LEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRP---------ATKAILANTRS 470 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + D+ A + NL + S RL ++E +E Sbjct: 471 TATAIDLRDEEEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDE 530 Query: 540 ERFAKILRKWARSEIE 555 ++ A +L++W E Sbjct: 531 QQAAAVLKQWIHQGEE 546 >gi|330972435|gb|EGH72501.1| flagellar MS-ring protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 594 Score = 375 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 120/586 (20%), Positives = 222/586 (37%), Gaps = 56/586 (9%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 85 AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQR 264 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329 N P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ ++ F + F ++ V ++ Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + K+ G G + ND ++L + Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ + R A+++++W ++ Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|115522990|ref|YP_779901.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53] gi|115516937|gb|ABJ04921.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53] Length = 535 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 136/551 (24%), Positives = 229/551 (41%), Gaps = 23/551 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V I F V +P L+ L V D + I Sbjct: 1 MEGLVNFLKGLGAARLMAMIAVTAALIGFFAFVILRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA GLP GYE+FDK + G TSF+ Sbjct: 61 LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSEALGSTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMN 244 AIRH+VA+AV L V+++D G+LL A + + Sbjct: 180 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPSTEGVTGDERRAAFEKRMRNQ 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + +++ +G R + A+ + + +DP+ + S++ + + + Sbjct: 240 VEAIVSSVVGTGRARVQLTADFDYNKITQTSDKFDPEGR-VLRSSQSREESSATLNPTDG 298 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VTV +P R + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 299 QVTVNNELPGAQGGAGAAAR--DQSKKSEETNNYEISRVTKTEVTEVGRVNRVSVAVLVD 356 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ---LFNS 421 G Q + L I +V +A G + +RGD + I ++ F E N Sbjct: 357 GLYNKNDKGELVYQERSKEELDRIAALVRSAIGFDQKRGDQVEIVNLRFAEGPAVVPINE 416 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 T + + VI V ++ ++V F+ + L R + Sbjct: 417 PTGILGMLKFTKDDVMYVIELGVMMLLGMVVIFMVIRPLVRRILAAEPGSPTALPALTDG 476 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 ++ D S +++ V QS R+ + + N Sbjct: 477 TV--------------SVGADGQPLPTPGPSMIDIAQVQGQVHAQSVHRVGELADRNPNE 522 Query: 542 FAKILRKWARS 552 A I+R+W + Sbjct: 523 TAAIIRQWLQE 533 >gi|254785458|ref|YP_003072887.1| flagellar MS-ring protein [Teredinibacter turnerae T7901] gi|237683992|gb|ACR11256.1| flagellar M-ring protein FliF [Teredinibacter turnerae T7901] Length = 558 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 116/561 (20%), Positives = 225/561 (40%), Gaps = 25/561 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + +L R L + + + A + Y LY L+ D + Sbjct: 11 NPAGDLIEGFNNLNLIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSAEVG 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L +I ++I + ++ VP + KARI LA G+ G+EL D+ G + Sbjct: 71 QVLDFNDIPYKIDGSTGALLVPVDKLQKARILLAENGI-QGDKTIGFELLDQEQPLGTSQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS- 183 FM+ R+LEGE+ARTI SI+ + +ARVH+ +P F + G P+ASV + Sbjct: 130 FMEATRYRRSLEGELARTIASINSVRSARVHLAIPKRSVFVRDGREPSASVFLDLYPGRP 189 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHE 240 K I +LVAA++P LD +VT++D G L+ + + + L + ++ + Sbjct: 190 IKPKQIAGIANLVAASIPELDSTNVTIVDQKGNLMEVAPEDEKLAQASQHLDYTRKVEDD 249 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + I + L +G NF++ V A+L+ + ++PD RS + S++ + Sbjct: 250 IVLRIRRLLTPIIGDANFKTEVAADLDFTEMEQAAETFNPDLPAIRSEQTSEEQRIGAGG 309 Query: 301 QPESAVTVEQNMPHVSDRK-------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + P ++ + NYE++ T H + Sbjct: 310 PGGIPGALTNQPPADGAAPEVAVPGGGGDGQTPPQQSQSRATRNYELDRTVSYTKHQKGR 369 Query: 354 LERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 L RL++AVVV+ G + ++ L + +V A G ++ RGD++ + + Sbjct: 370 LRRLTVAVVVDDKVQRNAETGEATRVPWTEAELERLAILVRDAVGFSAARGDSVNVLNEP 429 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F+ F+SG + + D F ++ L + + + + + + AK Sbjct: 430 FVAQLDFDSGDLPIWKED----WFLSLAKQLAGFLIIVALILGLMRPVLKSLAGAGAKTK 485 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 L + + + ++ + L + +Q + Sbjct: 486 AEEEAKELEALQAAGIDSFDSLSDETVTLTGGDALALPSPEET--------YEQQLNAVK 537 Query: 533 HMIEINEERFAKILRKWARSE 553 ++ + R A+++++W E Sbjct: 538 GLVAEDPGRVAQVIKRWINEE 558 >gi|170722857|ref|YP_001750545.1| flagellar MS-ring protein [Pseudomonas putida W619] gi|169760860|gb|ACA74176.1| flagellar M-ring protein FliF [Pseudomonas putida W619] Length = 592 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 121/583 (20%), Positives = 233/583 (39%), Gaps = 55/583 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ + + R + L + + + A + P Y LY L D ++ L+ Sbjct: 27 FLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLAA 86 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A+I + + N ++ V + + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 87 ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R+LEGE+ART+ S++ + AARVH+ +P F + +P+ASV++ + Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRSLEAGQ 206 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNI 245 AI +LVA +VP LD VTV+D G LL+ + + GK + ++ + + Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALTMAGKQFDYSRRMEGMLTQRV 266 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG D +++ V A+L+ + ++PD RS + + + S + P+ Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVNEQRASSS-GPQGV 325 Query: 306 VTVEQNMPH----------------------------------VSDRKVPLPRSLENTDK 331 N P P+ + Sbjct: 326 PGALSNQPPAGAAAPENATAAAPAAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPADKR 385 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391 + N+E++ T +L RLS+AVVV+ + G + LA ++ Sbjct: 386 LQTTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKVDAAGETTRAPWGAEDLARFTRL 445 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 V A G ++ RGD++T+ ++ F ++ + F ++ ++ +V L+ Sbjct: 446 VQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFILV 501 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 + F L + + L G + ND ++L + Sbjct: 502 LVFGVLRPVLNNITGGGKQAAATDSDMELGGMIG----LDGELANDRVSLGGPTSILLPS 557 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + ++ + R A+++++W ++ Sbjct: 558 P--------SEGYEAQLNAIKGLVAEDPGRVAQVVKEWINADE 592 >gi|316935488|ref|YP_004110470.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1] gi|315603202|gb|ADU45737.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1] Length = 537 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 134/551 (24%), Positives = 231/551 (41%), Gaps = 22/551 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQNLLSFLKGLGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + + G+ + VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQGIPFEMRNEGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE++RTI++I + AARVH+V+P F + P+AS+++R + Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPARPLFSREAPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMN 244 AIRHLVA+AV L V+++D G+LL + S A + + Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQMEGATSDERRAAFEKRMRHQ 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +++ +G R V A+ + + +DP+ +V RS + ++ + TS + Sbjct: 240 IEGIVSSVVGSGRARVQVSADFDYNKITQTSDTFDPEGRVLRSSQTREE--SAATSAADG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VTV +P + + + + + K EE +NYEI+ + + ++ RLS+AV+V+ Sbjct: 298 QVTVNNELPGAN--QGQGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + G + L I +V +A G + +RGD I + ++ F E Sbjct: 356 GAYTKDDKGELVYAERSKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQIEKLPE 415 Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 +I V + L+V F+ + L + + G ++ Sbjct: 416 PAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRVLAAEQTPEAAGLPALAD 475 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 V + S +++ V QS R+ + E N Sbjct: 476 GTVPQIGVDGQPVAPG------------MPSMIDIAQVQGQVHAQSVHRVGELAERNPNE 523 Query: 542 FAKILRKWARS 552 A I+R+W Sbjct: 524 TAAIVRQWLAE 534 >gi|66046686|ref|YP_236527.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae B728a] gi|63257393|gb|AAY38489.1| Flagellar FliF M-ring protein [Pseudomonas syringae pv. syringae B728a] Length = 594 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 120/586 (20%), Positives = 222/586 (37%), Gaps = 56/586 (9%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 85 AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQR 264 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329 N P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ ++ F + F ++ V ++ Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + K+ G G + ND ++L + Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ + R A+++++W ++ Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|330953748|gb|EGH54008.1| flagellar MS-ring protein [Pseudomonas syringae Cit 7] Length = 594 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 120/586 (20%), Positives = 222/586 (37%), Gaps = 56/586 (9%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 85 AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQR 264 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329 N P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPGTGQPALAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ ++ F + F ++ V ++ Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + K+ G G + ND ++L + Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ + R A+++++W ++ Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|58760481|gb|AAW82147.1| FliF [Stenotrophomonas maltophilia] Length = 545 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 116/553 (20%), Positives = 222/553 (40%), Gaps = 24/553 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V ++ + P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAVVSVFF---WSQKPGMVPLYTGLDQKATAEAT 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 70 DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 129 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI H+VAA++P+L VTV+D +G++L+ + V+ + Sbjct: 189 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 248 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S+ + T Sbjct: 249 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NTTSTP 306 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P ++ + K NYE++ T +++R+S+A Sbjct: 307 GPQGVPGATSNSPPGQQAAPATAQTPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 365 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ + Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 366 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 425 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G L+ V L + F L R + K E Sbjct: 426 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNRKNDE------- 473 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P L+ +D + L + D S + + ++ ++ + + Sbjct: 474 -PALEPHTADVQLVDDDGMPLPALGADRASLAGPDALALPVDSYEERLRMAREAVKTDSK 532 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 533 RVAQVVKGWVAND 545 >gi|291617848|ref|YP_003520590.1| FliF [Pantoea ananatis LMG 20103] gi|291152878|gb|ADD77462.1| FliF [Pantoea ananatis LMG 20103] Length = 572 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 132/548 (24%), Positives = 229/548 (41%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P+Y L+ L D I L++ N+ +R +DNG ++ VP V + R+ LA Q Sbjct: 47 LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL DK FG++ F +++ RALEGE+ARTI+S+ + ARVH+ MP Sbjct: 107 GLPK-GGNVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + +AI H+V+++V L G+VTV+D +G LLT Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224 Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 ++ R++ L ++ + I L LG N + V A++N DT + + Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSL-------- 326 Y P+ + + S+ SE S P N P ++ + Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344 Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 ++++ NYE++ T + ++RLS+AVVVN Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + L +I + A G + +RGD++ + + F + S Sbjct: 405 ----EDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTEPTVSELP-- 458 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F +I+A +L+ L+ L +R + P Sbjct: 459 --FWQQQSFFDQLISAGKWLLVALVAFILYRKTVRPHVLRKKEAE---ESGCRSDGCPCC 513 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 +A +G + + Q R +R+++ V Q R+ M E + A ++ Sbjct: 514 TAKRSGSLQ------RPAQQREMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564 Query: 547 RKWARSEI 554 R+W +E+ Sbjct: 565 REWMGNEL 572 >gi|78485783|ref|YP_391708.1| flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2] gi|78364069|gb|ABB42034.1| Flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2] Length = 561 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 125/553 (22%), Positives = 241/553 (43%), Gaps = 25/553 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 K+ TSL + + L + + L + + S Y L+ ++ D+N + L + Sbjct: 22 LLKNLTSLSVAKQVSLVIALAASVALAIGIILWSQSASYTLLFGSMDAKDMNEVIQTLDQ 81 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++I N +I VP+ V R+ LAAQG P + +GY++ D FG++ F + Sbjct: 82 ENVPYKIEQNSGAILVPNEQVHSLRLKLAAQGYPKQ-APTGYQILDIDQGFGISQFKETT 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187 RALEGE+A+++ SI+ + +ARV + MP F + PTASV ++ + Sbjct: 141 RYQRALEGELAKSVSSINAVKSARVMLGMPKRSVFVRKQQEPTASVTVKLYPGRALNEEQ 200 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNI 245 AI +LV++++PN+ VTV+D G LLT++ + K L + ++ + I Sbjct: 201 VSAIVYLVSSSIPNMKPKGVTVVDQQGNLLTSDSHSGIMNVSLKQLGYTRQVEDTLSQRI 260 Query: 246 NKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L G D R+ V AEL+ Q+ Y+PD + RS + K+ R+E P Sbjct: 261 IRLLTPVAGGDHKVRAQVTAELDFTQQEQTRENYEPDPEAIRSEQEIKEINRNE--GPMG 318 Query: 305 AVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + P K+++ NYE++ + + RLS+ Sbjct: 319 IPGALTNQPPRAGIAPEEGYKPENDPNLKNSKEKKTKNYELDRTVSHIKNSVGSIRRLSV 378 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV++ + G + + L ++VS A G++ RGDT++I + F++ + Sbjct: 379 AVVLDDKLTVDDNGDTVRTPLTEDELQRYRRLVSDAVGLDEARGDTLSIVNASFIQEKQE 438 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++ F T++ ++ + L++ F + + + + + Sbjct: 439 DFAGPEIWEEP----WFWTLVKQILAGLAVLIIIFGVIRPMLKDLSKREEVA-------- 486 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + P L D I+ + + + +S K+ ++ ++ + Sbjct: 487 MDYPEDVPEEEEELENADEISRALEQMNEEVEQKAEEVDEDSEKDKEMLEKVKAVVSADP 546 Query: 540 ERFAKILRKWARS 552 + A I+++W Sbjct: 547 KLAAHIIKQWMSK 559 >gi|154252631|ref|YP_001413455.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1] gi|154156581|gb|ABS63798.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1] Length = 552 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 129/555 (23%), Positives = 241/555 (43%), Gaps = 14/555 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + SLG R+ L V + F + + L+ + V D ++ Sbjct: 1 MSNVSNLLQSLGTMRLAALGLVAIALFSFFAFIALRMGNEPKALLFSDVGVEDAAKMIAE 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A + + + NG I VP + V + R+ LA +GLP + GYE+FD ++ G TSF+ Sbjct: 61 LDAAKVSYELRGNGGMIYVPQADVLRLRMMLAGKGLP-AGGTVGYEIFDNADALGTTSFL 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY 185 Q I +RALEGE+ARTI++I GI ARVH+V+P+ F + PTAS++++ N Sbjct: 120 QNINHLRALEGELARTIRAIEGIGGARVHLVLPERELFSRDRREPTASIVLKVSRNSLTT 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIE 242 + +AI++LVA+AV L G V+++D G LL + + + ++ ++ + Sbjct: 180 QQVKAIQYLVASAVDGLSPGRVSIVDERGALLASGVGEDTQSLLVTSVDERRTGYENRLR 239 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 ++ L +G D R V A+++ + +DP+ +V RS + D S Sbjct: 240 THLENILQRVVGADKARVEVTAQMDYNRITQTSDTFDPNGQVVRSTQTVDDNSTSADGAQ 299 Query: 303 ESAVTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 VTV N+P+ + S + +++ EE NYEI+ + + +++RLS+AV Sbjct: 300 NDGVTVGNNLPNANLGGAEAETGSRQASNRTEETVNYEISRTTKTEVLEPGRVKRLSVAV 359 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN- 420 +V+ + G + + + L +I +V +A G ++ RGD + I ++ F + Sbjct: 360 LVDGSYAADAEGNTVYTPRTEQELGKIEALVKSAIGFDTSRGDQVEIVNLQFAAAPDLDV 419 Query: 421 ---SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 FMD + V + L+ L + G++ Sbjct: 420 GLSEEEEAKGFMDFTRAEVMRMAEMAVLTILALVAMLFVLRPMLSRAFSGSTTTGQIAYT 479 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + + + + + + +++ V + S ++ ++ Sbjct: 480 NNS----AQAVLESPDGLDVPAGALPAPDQLSEDMMIDIAQVAGKVKQSSVRKIGELVTS 535 Query: 538 NEERFAKILRKWARS 552 + + ILR W Sbjct: 536 HPDESISILRSWLHE 550 >gi|330961220|gb|EGH61480.1| flagellar MS-ring protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 596 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 120/587 (20%), Positives = 225/587 (38%), Gaps = 54/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI + + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANIVYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P Sbjct: 323 GVPGALSNQPPGPATAPQTAGGGAAGAAGPIAAGQPLLDANGQQIMDPATGQPALAPFPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEISRAPWSATDLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + F ++ V ++ Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVI 498 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 L++ F L + +K+ ++ G + ND ++L Sbjct: 499 FILILVFGVLRPVLNNITNGKSKQ-QLAAFGGGDAELGGMGGLDGELSNDRVSLGGPQSI 557 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 558 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 596 >gi|331673452|ref|ZP_08374220.1| flagellar M-ring protein FliF [Escherichia coli TA280] gi|331069650|gb|EGI41037.1| flagellar M-ring protein FliF [Escherichia coli TA280] Length = 552 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQANTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMQAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|239834433|ref|ZP_04682761.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301] gi|239822496|gb|EEQ94065.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301] Length = 590 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 210/565 (37%), Positives = 324/565 (57%), Gaps = 7/565 (1%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + +++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLVALGLVGAALMAAILYTSIYLSRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G+LL + N + S+ Q + Sbjct: 188 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q E ++DP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGMGHFQTSVQAVLDTDRRQTNETIFDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEEIQNRNGESSSEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL E G + +D +A+I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLETAGTTPPPANFVDQQIAKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D + R + +NAL L L+ + GL L R N A ++ Sbjct: 428 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNARTAGTEVAIRETS 487 Query: 480 LSPPPI----SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 P +A A+ + + S + + + LRL MI Sbjct: 488 DVAAPDFVGGQAAGEGVQGAQGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQMI 547 Query: 536 EINEERFAKILRKWARSEIEDRYTQ 560 +++EER A +L++W R Q Sbjct: 548 DMDEERVAAVLKQWIHETAASREGQ 572 >gi|153011515|ref|YP_001372729.1| flagellar MS-ring protein [Ochrobactrum anthropi ATCC 49188] gi|151563403|gb|ABS16900.1| flagellar M-ring protein FliF [Ochrobactrum anthropi ATCC 49188] Length = 579 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 213/561 (37%), Positives = 322/561 (57%), Gaps = 5/561 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + +++ P Y+ LYV L DVN Sbjct: 4 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLSRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIVM + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVMAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G+LL + N + S+ Q + Sbjct: 183 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +QI E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGIGHFQTSVQAVLDTDRRQINETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 303 RNDNATGVEQNIPQEEIQNRNGESSTEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 362 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL E G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 363 VVIDQARLLETAGTTPPPANFVDQQITKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 422 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D + R + +NAL L L+ + GL L R N G Sbjct: 423 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNAK--PTGTEVAVRE 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 S + + V A+ + + S + + + LRL MI+++E Sbjct: 481 TSEVAMPNFVGGQAAGEGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQMIDMDE 540 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A IL++W R Q Sbjct: 541 ERVASILKQWIHETAASREAQ 561 >gi|222149996|ref|YP_002550953.1| flagellar MS-ring protein [Agrobacterium vitis S4] gi|221736978|gb|ACM37941.1| flagellar M-ring protein [Agrobacterium vitis S4] Length = 568 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 276/563 (49%), Positives = 377/563 (66%), Gaps = 9/563 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + +QLLQ FK+ +SLG T++ LA V +V + L + A FF+N P ++ LYV LE +DV Sbjct: 7 MNLFNQLLQVFKNLSSLGPTKLWTLAGVGVVSVALVIGAAFFINKPAFETLYVGLEATDV 66 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA + F+ +G SI V + M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 67 NQISIALAEAGVGFQTGADGKSIQVQAGMTGKARLLLAERGLP-NSTNAGYELFDNVGSL 125 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ I+GI AARVHIVMPD+G+FR+ +PTASVMIRA Sbjct: 126 GLTSFMQEVTRVRALEGEIARTIQQINGIAAARVHIVMPDVGNFRRGAQKPTASVMIRAG 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + + KSA +IRHLVA+AVP L++ DVT+LDSTG+LL + + ++L + Q++Q E Sbjct: 186 SDAGRKSAASIRHLVASAVPGLEIDDVTILDSTGQLLASGDETGGAANRNLGVAQSVQQE 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 IE NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS R +K+AQ+S+ Sbjct: 246 IESNIDKALAPFLGMDNFRSSVTAQLNTDQQQIQETVYDPESKVERSTRTTKEAQKSQQR 305 Query: 301 QPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 Q ++A TVEQN+P + + P S + DKKEEQ+NYEIN+K+IAT + Y L++LS+ Sbjct: 306 QSDTAATVEQNIPQAAPQAGGAGPESSDQQDKKEEQTNYEINSKTIATVKNGYTLDKLSV 365 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVNK R+ ++G DQ KID+YLAE+ KIV +A G++ +RGD +T+T+MDFLENQL Sbjct: 366 AVVVNKQRIATMVGEPVDQAKIDAYLAEMQKIVKSAAGLDDKRGDVVTLTAMDFLENQLL 425 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + M+ILSR+ A +IN+L FL LV ++G+ + R E G ++ Sbjct: 426 SEAPTGPGVMEILSRNMAGIINSLAFLAVAFLVVWMGIRPMVRSMGGGGTAALEGGSDAV 485 Query: 480 LSPPPISSAVTTGLMPNDNIALD-------SSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + S D+ + + N V + + RL Sbjct: 486 AGLELPDFSPGLDAGAGGGLMDGFGSDFGFDSADDVLALDNDPNGGFNRRVKEGPERRLA 545 Query: 533 HMIEINEERFAKILRKWARSEIE 555 M+EI+EER AKILRKWA Sbjct: 546 RMVEISEERAAKILRKWAVENAA 568 >gi|121997300|ref|YP_001002087.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1] gi|121588705|gb|ABM61285.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1] Length = 595 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 124/560 (22%), Positives = 224/560 (40%), Gaps = 15/560 (2%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63 + + R L L + +L L +A F+ P LY L D + Sbjct: 43 EDWREQLTRVLGDNPLRKLGLGAGLLAVAGLGVAIFFWAQEPAELRTLYADLSSDDAAEV 102 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL E + + I VP + V +ARI LA++GLP S GYE+ + FG++ Sbjct: 103 INALEEQGVRVEFDERTGDIKVPENAVHRARIFLASEGLPR-GSGFGYEMLEDDPGFGVS 161 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 FM+ RALE E+AR+I+++ G+V+ARVH+ P F + ASV++ Sbjct: 162 EFMEHARFDRALETELARSIETLRGVVSARVHLDDPQESVFVRDRRDAKASVVLELDQDR 221 Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQH 239 + E I HLVA+AV +L+ G+V+V+D G+LLTA + + + + ++ Sbjct: 222 QLPDRQVEGIIHLVASAVSDLEHGNVSVVDHRGRLLTAEDEPTEATRSAQQFELTRRLEE 281 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ + + +G D R+ V A LN D ++ E ++DP+S RS ++S+ Sbjct: 282 RIQRRVEDMVEPIIGPDRVRAQVSARLNFDERRQIEELFDPESSAIRSEQMSER-SGGGG 340 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--KKEEQSNYEINTKSIATTHDNYKLERL 357 P N P +E N+E+ ++RL Sbjct: 341 QWPIGIPGALTNQPPGPGTLDGEELEGGGGTPFSSDETRNWEVGRTLSEVQPAIGVIDRL 400 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++ V+V+ + G + D + + +V A G ++ RGD +++ ++ F E Sbjct: 401 TVGVLVDHRYVQNEDGEVVREALSDEEIQTLENLVQDAVGYDADRGDAVSVATVPFAEIV 460 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 +V + +I VF LL+ + + + + + E G Sbjct: 461 EPPDPPEEVWEQE----WVRDLIRLAVFAAIGLLIYIVAIRPIVNRMLGGEDELDEESGG 516 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + L + + S S + + +L ++E Sbjct: 517 AETEGLERPAG--ESLASPGRGQEGEAALQLAGISGEQLSDMRERPYEAKLQAVLELVEN 574 Query: 538 NEERFAKILRKWARSEIEDR 557 E A ++ W + + + Sbjct: 575 EPELAANAVKAWLDEDDKRK 594 >gi|325920574|ref|ZP_08182496.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas gardneri ATCC 19865] gi|325548967|gb|EGD19899.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas gardneri ATCC 19865] Length = 576 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 113/571 (19%), Positives = 229/571 (40%), Gaps = 32/571 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A ++ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFYWSQKPGYQSLYTGLDDKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I N +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQNTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + RS + + + + Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQ--INDTSTSAT 312 Query: 301 QPESAVTVEQN-----------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 P+ N + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAANATAGAPGAPAAANGQAAAPAAPTESSKSATRNYELDRT 372 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RG Sbjct: 373 LQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARG 432 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+++ + F+ + + + + LV V L + F + R Sbjct: 433 DTVSVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQ 488 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K K + M +D+ + +D ++ + I Sbjct: 489 LTGVTVVKD----KQGKGGKDGTPQSADVRMVDDDDLMPRLEEDTAQLGQDKKVPIALPD 544 Query: 524 SKQSDLRL-LHMIEINEERFAKILRKWARSE 553 + + +R+ ++ + +R A++++ W SE Sbjct: 545 AYEERMRVAREAVKADSKRVAQVVKGWVASE 575 >gi|190574239|ref|YP_001972084.1| flagellar MS-ring protein [Stenotrophomonas maltophilia K279a] gi|190012161|emb|CAQ45784.1| putative flagellar M-ring protein [Stenotrophomonas maltophilia K279a] Length = 548 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 117/553 (21%), Positives = 224/553 (40%), Gaps = 21/553 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V + ++ F+ P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 73 DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI H+VAA++P+L VTV+D +G++L+ + V+ + Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S+ + T Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NTTSTP 309 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P ++ + K NYE++ T +++R+S+A Sbjct: 310 GPQGVPGATSNSPPGQQAAPATAQTPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 368 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ + Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 369 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G L+ V L + F L R + K E Sbjct: 429 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDE------- 476 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P L+ +D + L + D S + + ++ ++ + + Sbjct: 477 -PALEPHTADVQLVDDDGMPLPALGADRASLAGPDALALPVDSYEERLRMAREAVKTDSK 535 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 536 RVAQVVKGWVAND 548 >gi|116250467|ref|YP_766305.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255115|emb|CAK06189.1| putative flagellar M-ring protein [Rhizobium leguminosarum bv. viciae 3841] Length = 561 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 295/562 (52%), Positives = 392/562 (69%), Gaps = 8/562 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +GSSISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGSSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + + N +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT +YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA----KKGE 473 L T V MD+LSR+ A +IN+L F+ +V ++GL L R N A E Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSINGTSAAFGDATPE 479 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 G + P S A LM + + + N V + + +L Sbjct: 480 AAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSR 539 Query: 534 MIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA E Sbjct: 540 MVEINEERAAKILRKWAIDEAA 561 >gi|323940403|gb|EGB36594.1| flagellar M-ring protein FliF [Escherichia coli E482] Length = 552 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + A ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIAQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|261855054|ref|YP_003262337.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2] gi|261835523|gb|ACX95290.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2] Length = 590 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 117/572 (20%), Positives = 229/572 (40%), Gaps = 35/572 (6%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 T R L++ + + + + P LY L + + AL A Sbjct: 26 IDGFTQSSSFRQLLILVALAATLSFMVGFFLWGQKPSLVPLYTNLGPKESAAVVEALRAA 85 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 ++++S +G +I V + + R+ LA +GLP S + G E+ DK S G + F+++ Sbjct: 86 KKNYQLSADG-AILVDPAQLPAVRMLLAGEGLP-SGNGVGLEMLDKDQSLGTSQFVEQAR 143 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 A+E E+AR+I++I G+ AARVH+ P F + +PTASV+ + Sbjct: 144 YQHAIEIELARSIETIQGVSAARVHLATPKQSVFVREQQKPTASVVVELSPGQSLTADQV 203 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNI 245 AI HLVA++V + +V+V+D G+LL+ N + + + K + Q ++ I Sbjct: 204 RAIVHLVASSVAGMKPENVSVIDQRGELLSQNSDDASGMGLTDKQFAYRQRVERAYARQI 263 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR-SETSQPES 304 L +G + R+ V A+++ Q+ Y P + V S + + + + Sbjct: 264 EALLTPIVGANQVRAQVSADIDFSRQEGTSETYGPKTGVVLSEQTNDTTRALGDQGINGG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN------------------TDKKEEQSNYEINTKSIA 346 N P P + +K E NY ++ Sbjct: 324 VPGALSNQPPGGGTVTPQTSGGLQPPANLDVQQYQQIIQTPISTQKNETRNYNVDKDIRH 383 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T + + +++L++AV++++ +T+ G++ + D+ LA I +VS A G++ +RGD + Sbjct: 384 TQYASGAVDKLNVAVLLDEKTVTDKDGKTKTEPMSDAELARIKDLVSQAVGLDEQRGDKL 443 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 T+ S+ F+E ++ F ++ L V LL+ + + L ++ Sbjct: 444 TLASIPFVEQKIEKVSVPLW-----QQEWFMPLLKNLGLGVAMLLIFLMVVRPLLKMLAD 498 Query: 467 DDAKKGEVGGKSILSPPPISS----AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + P + D + + + + Sbjct: 499 KSRPEALPHQPGAALPNGTEDNGMNEEGVSFTRQASEGGQIPGPDDEDNLEGVPQLVGAA 558 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 +L I + + A ++++W SE Sbjct: 559 SYADKLRQLKQSINHDPKAVAAVIKQWTHSEN 590 >gi|170019729|ref|YP_001724683.1| flagellar MS-ring protein [Escherichia coli ATCC 8739] gi|188492347|ref|ZP_02999617.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|300951563|ref|ZP_07165396.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1] gi|300956546|ref|ZP_07168828.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1] gi|169754657|gb|ACA77356.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739] gi|188487546|gb|EDU62649.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|300316646|gb|EFJ66430.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1] gi|300449190|gb|EFK12810.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1] gi|332093105|gb|EGI98169.1| flagellar M-ring protein FliF [Shigella boydii 5216-82] Length = 552 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|193222343|emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans] Length = 562 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 123/573 (21%), Positives = 221/573 (38%), Gaps = 59/573 (10%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + R +L + I + + + P Y L+ D I +L AN+ Sbjct: 17 NMAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANV 76 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ ++ G +I VP+ V + R+ LAA+GLP S G+EL + G++ F++++ Sbjct: 77 PYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELM-ENQKLGVSQFLEQVNFQ 134 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190 RALEGE+AR+IQS+ + AARVH+ +P F + +PTASV++ + A Sbjct: 135 RALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSA 194 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINK 247 I HLVA++VP L +VT++D G LL+ N + L VQ +Q I I Sbjct: 195 IVHLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIES 254 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--QPESA 305 + +G++N R+ A+++ T + +Y P+ + S+ S Sbjct: 255 IITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGV 314 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTD-------------------------KKEEQSNYEI 340 N P + +++ +NYE+ Sbjct: 315 PGALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEV 374 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + L+RLS+AVVVN R+ G+ + + +I +V A G N Sbjct: 375 DKTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNK 434 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 RGDT+ + + F + + + + L+ + L++ F L L Sbjct: 435 DRGDTLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKPL 494 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 N + G+ + + V I+ Sbjct: 495 LNKLNPPPLALTDESGQPVGMAQELEEEVG-------------------------PMGIH 529 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +Q+ + + + A I++ W +E Sbjct: 530 MHSYQQNLEAAKELARQDPKVVANIVKAWVGNE 562 >gi|187926897|ref|YP_001893242.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J] gi|241665226|ref|YP_002983585.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D] gi|187728651|gb|ACD29815.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J] gi|240867253|gb|ACS64913.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D] Length = 611 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 129/580 (22%), Positives = 242/580 (41%), Gaps = 49/580 (8%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 L ++++ LV + A + +P Y L+ + +D I AL + N+ Sbjct: 41 LGRLSPRLLMMIGGAALV--AVLAAVMLWSRAPDYRVLFSNVSDADGGAIIAALQQMNVP 98 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +R +D G++I VP + V + R+ LA+QGLP +G+EL + FG + F +++ R Sbjct: 99 YRFADGGTAIMVPEANVHETRLKLASQGLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQR 156 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAI 191 ALEGE+ARTIQ++ + +ARVH+ + F + A+P+ASV++ +AI Sbjct: 157 ALEGELARTIQAMQEVQSARVHLALSKPSVFVREQAKPSASVLLTLYPGRMLDRSQVQAI 216 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKAL 249 HLV+++VPNL + +VTV+D G+LL++ + + L+ V+ I+ I L Sbjct: 217 GHLVSSSVPNLPLANVTVVDQAGRLLSSSFQDNASGLDPTQLNYVREIEQGYIKRIEAIL 276 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP---ESAV 306 +G DN R+ V A++++D + Y P+ + S S ++ Sbjct: 277 GPVVGDDNVRAQVTADVDLDNTEQMAETYRPNQDPSTAAVRSTHTAESTQNKADAQGGVP 336 Query: 307 TVEQNMPHVSDRK-------------------------------VPLPRSLENTDKKEEQ 335 N P + R + + ++ Sbjct: 337 GALSNQPPTAPRMLPTAPAPASQPAAAGPNGANGQAQQPAAANTNATTTNGATSSTRDTT 396 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +NYE++ T + RLS+AVVVN + D+ +A++N +V A Sbjct: 397 TNYEVDKTVRRTRAAVGTVRRLSVAVVVNYRA-----DGKTWKPLSDAEMAKLNALVKDA 451 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G +++RGD++ + + F + + + ++ L +G L++ F Sbjct: 452 VGFDAKRGDSVNVVNSQFSGTLPVPKDDLPLWKQPEMIQYAIQAAKYLALAIGFLILVFA 511 Query: 456 GLHALRRLHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 + L R N DA VG + PI + P S+ Sbjct: 512 VIRPLIRSLNKKDAPATPTFVGREGEDPNAPIITGAAASAGPELEGPSSSAIGAGGEDVP 571 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ + + + + + N A ++++W +E Sbjct: 572 DSLPQLKNADFEHKLETMRRVAQQNPRAVAAVIKQWVSNE 611 >gi|237799234|ref|ZP_04587695.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022089|gb|EGI02146.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 595 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 124/587 (21%), Positives = 231/587 (39%), Gaps = 55/587 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMETL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + AARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSGSG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P + Sbjct: 323 GVPGALSNQPPGPATAPQTAGAGGAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPFPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ T G + + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 ++V A G ++ RGD++++ ++ F + F ++ V ++ Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDLVKQAVGVI 498 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 L++ F L + L+NI + K ++ G + ND ++L Sbjct: 499 FILILVFGVLRPV--LNNITNGKSKQLAAFGGGDAELGGMGGLDGELSNDRVSLGGPQSI 556 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 557 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 595 >gi|260466610|ref|ZP_05812798.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075] gi|259029616|gb|EEW30904.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075] Length = 549 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 225/552 (40%), Positives = 328/552 (59%), Gaps = 7/552 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q+ + G R+ +LA + ++ + + A ++N P YD LYV L+ SDVN+I Sbjct: 3 EQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRSDVNQIG 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + L EA I F + +G+S+ VP+ +AR+ LA +GLP+S +N+GYELFD V + GLTS Sbjct: 63 LVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPTS-ANAGYELFDNVGAMGLTS 121 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FMQ+ITRVRALEGEIARTIQSI+GI AARVHIVM + +FR+ +P+ASV+IR Sbjct: 122 FMQQITRVRALEGEIARTIQSIAGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDA 181 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEM 243 KSA +IRHLVAAAVP L VTVLDS G LL A + N ++L + Q ++ +I Sbjct: 182 EKSAMSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGD 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 NI +AL +LG DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + S Q Sbjct: 242 NIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQAS 301 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + +VEQN+P P++ D+KEE +NYEIN+K IAT + Y + ++SIAVVV Sbjct: 302 TPASVEQNLPETQAASTEGPQTSSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVV 361 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N+ RL +LG+ A +I +AEI K+VS+ATG + +RGD I +++++F++ L Sbjct: 362 NQDRLKTILGKDATPEQIAKRVAEIQKMVSSATGFDDKRGDVIDVSAVEFID-GLDGEAV 420 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 Q +D + +H T+INA F+V LV F GL + + G + Sbjct: 421 PQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTAKATPTPAISGPNFDEVQ 480 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 N + S + + +L+ +I RL M++INEER A Sbjct: 481 RSLPTPEAAASANAAVGALPSARPGATPLDDLRQKIRPA----PQERLARMVDINEERTA 536 Query: 544 KILRKWARSEIE 555 +ILRKWA E+ Sbjct: 537 QILRKWAAQEVA 548 >gi|325291912|ref|YP_004277776.1| flagellar MS-ring protein [Agrobacterium sp. H13-3] gi|325059765|gb|ADY63456.1| flagellar MS-ring protein [Agrobacterium sp. H13-3] Length = 560 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 270/555 (48%), Positives = 384/555 (69%), Gaps = 7/555 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+Q+ Q K+ +LG+TR+L+L V ++ + + +AA +VN P Y+ LYV LE SD+ Sbjct: 1 MNLLNQIPQVLKNFAALGQTRLLMLGGVGILSMAIILAAALYVNRPAYETLYVGLEKSDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA +DF++ +G+S+ VP + KAR+ LA +GLP S+N+GYELFD V S Sbjct: 61 NKISIALAEAGLDFQVGTDGASLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI+R+IQ I GI AARVHIVMPD+G+FR+ +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEISRSIQQIDGIAAARVHIVMPDVGNFRRGEQKPTASVMIRAN 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + + N +SL++ Q +Q Sbjct: 180 ATAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A+LN D++QI+E VYDP+S+VERS+R K+ Q+S+ Sbjct: 240 EITTNIDKALAPFLGMDNFRSSVTAQLNTDSRQIQETVYDPESRVERSVRTVKEDQKSQE 299 Query: 300 SQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 +QP++A TVEQN+P + + P+S + + KKEEQ+NYEIN+K++AT + Y +E++S Sbjct: 300 TQPDTAATVEQNVPQAAPQGGAGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTVEKIS 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVNKGR+ +++G DQ KID+YLAE+ KIV++A G++S RGD +T+T+MDFLE QL Sbjct: 360 VAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKIVTSAAGVSSDRGDIVTLTAMDFLETQL 419 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474 + M++LSR+ A +IN+L F+ LV +LG+ L R + A G E Sbjct: 420 LDEAASGPGIMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTGNGAAAGQISQET 479 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + P A GLM + D + + N V + + RL M Sbjct: 480 AGLELPDFSPGMDAGAGGLMEGFGADFGFDSTDDLLAGGDSEGTFNRRVREGPERRLSRM 539 Query: 535 IEINEERFAKILRKW 549 +EI+EER AKILRKW Sbjct: 540 VEISEERAAKILRKW 554 >gi|197249147|ref|YP_002146054.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212850|gb|ACH50247.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 579 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 390 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579 >gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas arsenicoxydans] Length = 545 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 123/572 (21%), Positives = 220/572 (38%), Gaps = 59/572 (10%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 R +L + I + + + P Y L+ D I +L AN+ Sbjct: 1 MAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVP 60 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++ ++ G +I VP+ V + R+ LAA+GLP S G+EL + G++ F++++ R Sbjct: 61 YKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELM-ENQKLGVSQFLEQVNFQR 118 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191 ALEGE+AR+IQS+ + AARVH+ +P F + +PTASV++ + AI Sbjct: 119 ALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSAI 178 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINKA 248 HLVA++VP L +VT++D G LL+ N + L VQ +Q I I Sbjct: 179 VHLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESI 238 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--QPESAV 306 + +G++N R+ A+++ T + +Y P+ + S+ S Sbjct: 239 ITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVP 298 Query: 307 TVEQNMPHVSDRKVPLPRSLENTD-------------------------KKEEQSNYEIN 341 N P + +++ +NYE++ Sbjct: 299 GALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVD 358 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 L+RLS+AVVVN R+ G+ + + +I +V A G N Sbjct: 359 KTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNKD 418 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGDT+ + + F + + + + L+ + L++ F L L Sbjct: 419 RGDTLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKPLL 478 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 N + G+ + + V I+ Sbjct: 479 NKLNPPPLALTDESGQPVGMAQELEEEVG-------------------------PMGIHM 513 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +Q+ + + + A I++ W +E Sbjct: 514 HSYQQNLEAAKELARQDPKVVANIVKAWVGNE 545 >gi|194439576|ref|ZP_03071649.1| flagellar M-ring protein FliF [Escherichia coli 101-1] gi|194421485|gb|EDX37499.1| flagellar M-ring protein FliF [Escherichia coli 101-1] gi|323972762|gb|EGB67962.1| flagellar M-ring protein FliF [Escherichia coli TA007] Length = 552 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLHANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|194469863|ref|ZP_03075847.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|200390157|ref|ZP_03216768.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205358799|ref|ZP_02659200.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194456227|gb|EDX45066.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|199602602|gb|EDZ01148.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205331875|gb|EDZ18639.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 579 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + + ++ E SNYE++ Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 447 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579 >gi|198243509|ref|YP_002215117.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938025|gb|ACH75358.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 576 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 30 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 89 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 90 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 147 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 148 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 207 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 208 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 267 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 268 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 327 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 328 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 387 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 388 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 443 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 444 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 499 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 500 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 547 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 548 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 576 >gi|325981191|ref|YP_004293593.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212] gi|325530710|gb|ADZ25431.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212] Length = 571 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 131/572 (22%), Positives = 218/572 (38%), Gaps = 49/572 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + +SL + L L + I L + A + +P Y LY L D I AL + Sbjct: 19 LEHLSSLSNQKKLGLITSAAAVIALLVGALMWSQAPEYRALYNNLSDHDGAAIISALQQM 78 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ + S++G +I +P V + R+ LA QGLP G+EL + FG + F++++ Sbjct: 79 NVPYTFSESGGTILIPEKQVHEVRLKLAGQGLPKGGL-VGFELM-ENQKFGSSQFLEQVN 136 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSA 188 RALEGE+AR++QS+S + +ARVH+ + F + +P+ SV++ + Sbjct: 137 YQRALEGELARSVQSLSAVQSARVHLAIAKPSVFSREKQQPSVSVLLNLYPGRVLSIEQV 196 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNI 245 AI HL+A++VPNL + +VTV+D G LL++ + K L+ +Q ++ I Sbjct: 197 SAIVHLMASSVPNLPVKNVTVVDQNGNLLSSQNDKKEDSRFDAKQLAYIQELEENYIRRI 256 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIRLSKDAQRSETSQP-- 302 L G N R+ V A+++ + E Y P++ R+ S+ S + Sbjct: 257 ETILTPITGATNVRAQVTADVDFSRIERAEETYRPNNTEADRASIRSQQTHESMSIGSKF 316 Query: 303 -ESAVTVEQNMPHVSDRKVPLPRSL--------------------ENTDKKEEQSNYEIN 341 N P KKE NYE++ Sbjct: 317 DGGIPGALTNRPPEPAIAPIEAGGKKPAGDKAEGDEEETDSTPPLPTDKKKESTINYEVD 376 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 T ++RLS AVVVN + + G + + EIN +V A G N R Sbjct: 377 KTVQHTQQSTGNIKRLSAAVVVNYRKKVDESGAITYEPLSAEEIKEINNLVREAMGYNER 436 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD++T+T+ F + L+ +V F L LR Sbjct: 437 RGDSLTVTNGLFTGETETVLEVP----FWKDPDVIMLAKDFAKQLLIIGVVLFFLLKILR 492 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 T + D AL+ + + Sbjct: 493 PFLKSLAPPPPLPALT-----------DNTTQVAADGTALEQLPGQTDGTAMQAIQK--- 538 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ R + A +++ W Sbjct: 539 SMFDENLKRAKQLAMDEPAIVANVVKDWIVKN 570 >gi|295098292|emb|CBK87382.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 543 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 129/568 (22%), Positives = 227/568 (39%), Gaps = 51/568 (8%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 L + L I + +A + SP Y LY L D I L++ NI Sbjct: 1 MNRLRANPKIPLIVAGAAAIAIVVAMVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIP 60 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +R +DNG ++ VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ R Sbjct: 61 YRFADNGGALEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQR 118 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAI 191 ALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + A+ Sbjct: 119 ALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDEGQISAV 178 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALA 250 HLV++AV L G+VT++D +G LLT + R++ L ++ ++ I L Sbjct: 179 THLVSSAVAGLPPGNVTLVDQSGHLLTQSNTAGRDLNDAQLKYAADVEGRLQRRIEAILG 238 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVT 307 +G N + V A+++ ++ E Y P+ R++ S+ +E P Sbjct: 239 PVVGSSNVHAQVTAQIDFSNKEQTEEQYAPNGDASRAVLRSRQINETEQVGGQYPGGVPG 298 Query: 308 VEQNMPHVSDRKV--------------------PLPRSLENTDKKEEQSNYEINTKSIAT 347 N P ++ + + E +NYE++ T Sbjct: 299 ALSNQPAPANAAPISTPPANPQNGQQTNQQTTSTANSTGPRNSSRNETTNYEVDRTIRHT 358 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RLS+AVVVN L + + +I + A G + +RGDT+ Sbjct: 359 KLNTGDIQRLSVAVVVNYKTLPDGK----PLPLTAEQMKQIEDLTREAMGFSEKRGDTLN 414 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F F +++A +L+ ++ L +R Sbjct: 415 VVNSPFNPVDETGGELP----FWQQQAFFDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR 470 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + P + ++D R R+ + V Q Sbjct: 471 AEAEKAALEQKNARP------------DEEEAVEVRLSKDEQMQQRRANQRMGAEVMSQ- 517 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R W +E E Sbjct: 518 --RIREMSDNDPRVVALVIRGWMGNEHE 543 >gi|82702474|ref|YP_412040.1| flagellar MS-ring protein [Nitrosospira multiformis ATCC 25196] gi|82410539|gb|ABB74648.1| flagellar M-ring protein FliF [Nitrosospira multiformis ATCC 25196] Length = 567 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 119/561 (21%), Positives = 220/561 (39%), Gaps = 48/561 (8%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 T L + + L + + L A + P Y L+ + D I +L + Sbjct: 33 LQSFLTRLSSQQKIGLMLTVSSLVALLAAGWMWTQGPDYKVLFSNVSDGDGGAIIASLQQ 92 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ ++ G +I VPSS V R+ LA+QGLP G+EL + FG + F++++ Sbjct: 93 MNVPYKFAEGGGAILVPSSQVHDTRLKLASQGLPRGGL-VGFELM-ENQKFGTSQFLEQV 150 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187 RALEGE+AR++Q+++ + +ARVH+ +P F + +P+ASV++ + Sbjct: 151 NFQRALEGELARSVQALAAVDSARVHLAIPKQSVFMREQQKPSASVLVNLYPGRTLDPQQ 210 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMN 244 AI HLV+++VPNL + +VTV+D G LLT + G L + A++ Sbjct: 211 VNAIVHLVSSSVPNLHVKNVTVVDQQGDLLTRIDESNPNTGLDPAQLKYLHALEQSYIKR 270 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-- 302 I L +G +N R+ V AE++ + Y P+ S S+ + S Sbjct: 271 IEAILIPIVGQENVRAQVAAEVDFAHSEQTSETYRPNQDPAGSTIRSQQSSESTNVGTQN 330 Query: 303 -ESAVTVEQNMPHVSDRK-----------VPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 N P V P ++ +K+ NYE++ Sbjct: 331 EGGVPGALSNQPPVPATAPVTTPPAPPGATASPSRAPSSTRKDATINYEVDKTIQHVRKP 390 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AVVVN R+ + G + + + ++I +V A G + RGDT+ + + Sbjct: 391 VGGIKRLSVAVVVNHRRVVDENGVVSAKPLSEVEKSQITDLVKEAVGFSRERGDTLNVVN 450 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + + + + + + L+ L + L + + + Sbjct: 451 SHFTGVEREAAPELPLWKQPEVVELAQQIGKTLLIGGLILYLVLGVLRPSLKRISQPEPP 510 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P+ L+ +Q Sbjct: 511 LLAEPRNDDQDVQPV---------------------------PALKPAAQPSEYEQRLTL 543 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + A ++++W Sbjct: 544 ARQLAKKEPKLVANVVKQWVA 564 >gi|293410294|ref|ZP_06653870.1| flagellar M-ring protein FliF [Escherichia coli B354] gi|291470762|gb|EFF13246.1| flagellar M-ring protein FliF [Escherichia coli B354] Length = 552 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIIAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S +S P N P ++ S + ++ E SNY Sbjct: 299 EQSGSSYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRHAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|1772459|dbj|BAA14029.1| FliF [Escherichia coli W3110] Length = 552 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N R+ V A L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIRAQVTAHLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|194451642|ref|YP_002046020.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195873172|ref|ZP_02696421.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205357978|ref|ZP_03223896.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205359405|ref|ZP_02669752.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194409946|gb|ACF70165.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633848|gb|EDX52200.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205328375|gb|EDZ15139.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336392|gb|EDZ23156.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|323130248|gb|ADX17678.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 579 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + + ++ E SNYE++ Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579 >gi|300920157|ref|ZP_07136607.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1] gi|300412814|gb|EFJ96124.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1] Length = 552 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLHANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTSRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|16129885|ref|NP_416448.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. MG1655] gi|89108770|ref|AP_002550.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. W3110] gi|157161409|ref|YP_001458727.1| flagellar MS-ring protein [Escherichia coli HS] gi|170081582|ref|YP_001730902.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. DH10B] gi|170682432|ref|YP_001743307.1| flagellar MS-ring protein [Escherichia coli SMS-3-5] gi|193071157|ref|ZP_03052081.1| flagellar M-ring protein FliF [Escherichia coli E110019] gi|218554518|ref|YP_002387431.1| flagellar MS-ring protein [Escherichia coli IAI1] gi|238901143|ref|YP_002926939.1| flagellar basal-body MS-ring and collar protein [Escherichia coli BW2952] gi|253773113|ref|YP_003035944.1| flagellar MS-ring protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260855913|ref|YP_003229804.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O26:H11 str. 11368] gi|300822292|ref|ZP_07102433.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7] gi|301018212|ref|ZP_07182727.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1] gi|331663434|ref|ZP_08364344.1| flagellar M-ring protein FliF [Escherichia coli TA143] gi|331668629|ref|ZP_08369477.1| flagellar M-ring protein FliF [Escherichia coli TA271] gi|2506421|sp|P25798|FLIF_ECOLI RecName: Full=Flagellar M-ring protein gi|1736604|dbj|BAA15763.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K12 substr. W3110] gi|1788248|gb|AAC75005.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. MG1655] gi|157067089|gb|ABV06344.1| flagellar M-ring protein FliF [Escherichia coli HS] gi|169889417|gb|ACB03124.1| flagellar basal-body MS-ring and collar protein [Escherichia coli str. K-12 substr. DH10B] gi|170520150|gb|ACB18328.1| flagellar M-ring protein FliF [Escherichia coli SMS-3-5] gi|192955552|gb|EDV86031.1| flagellar M-ring protein FliF [Escherichia coli E110019] gi|218361286|emb|CAQ98870.1| flagellar basal-body MS-ring and collar protein [Escherichia coli IAI1] gi|238861094|gb|ACR63092.1| flagellar basal-body MS-ring and collar protein [Escherichia coli BW2952] gi|253324157|gb|ACT28759.1| flagellar M-ring protein FliF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257754562|dbj|BAI26064.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O26:H11 str. 11368] gi|260448949|gb|ACX39371.1| flagellar M-ring protein FliF [Escherichia coli DH1] gi|284921846|emb|CBG34921.1| flagellar M-ring protein [Escherichia coli 042] gi|300399799|gb|EFJ83337.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1] gi|300525175|gb|EFK46244.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7] gi|309702227|emb|CBJ01544.1| flagellar M-ring protein [Escherichia coli ETEC H10407] gi|315136575|dbj|BAJ43734.1| flagellar MS-ring protein [Escherichia coli DH1] gi|323152731|gb|EFZ39003.1| flagellar M-ring protein FliF [Escherichia coli EPECa14] gi|323937208|gb|EGB33488.1| flagellar M-ring protein FliF [Escherichia coli E1520] gi|324118987|gb|EGC12876.1| flagellar M-ring protein FliF [Escherichia coli E1167] gi|331059233|gb|EGI31210.1| flagellar M-ring protein FliF [Escherichia coli TA143] gi|331063823|gb|EGI35734.1| flagellar M-ring protein FliF [Escherichia coli TA271] Length = 552 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|197264219|ref|ZP_03164293.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242474|gb|EDY25094.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 579 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKAPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + + ++ E SNYE++ Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 447 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579 >gi|281179000|dbj|BAI55330.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli SE15] Length = 552 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V +++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQALARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|157158866|ref|YP_001463240.1| flagellar MS-ring protein [Escherichia coli E24377A] gi|157080896|gb|ABV20604.1| flagellar M-ring protein FliF [Escherichia coli E24377A] Length = 552 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI +I + ARVH+ MP F + P+ASV I Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTINLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|194445262|ref|YP_002041234.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194736346|ref|YP_002115003.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301177|ref|ZP_02664267.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204931028|ref|ZP_03221854.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194403925|gb|ACF64147.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194711848|gb|ACF91069.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288091|gb|EDY27478.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320072|gb|EDZ05277.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 579 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 390 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579 >gi|90021833|ref|YP_527660.1| flagellar MS-ring protein [Saccharophagus degradans 2-40] gi|89951433|gb|ABD81448.1| flagellar M-ring protein FliF [Saccharophagus degradans 2-40] Length = 556 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 115/559 (20%), Positives = 224/559 (40%), Gaps = 26/559 (4%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +L R L + + + A + Y LY L+ D + + L Sbjct: 11 NDLIDGFNNLNIIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSSEVGAIL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I ++I + ++ V V +AR+ LA G+ +++GYEL D+ G + FM+ Sbjct: 71 DFNEIPYKIDGSTGALLVAVDEVHRARLVLAENGI-QGDNSTGYELLDQEQPLGTSQFME 129 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VY 185 R +EGE+ARTI SI+ + ARVH+ +P F G +P+ASV + Sbjct: 130 ATRYKRGIEGELARTIASINSVRGARVHLAIPKRSVFVGDGRKPSASVFLDLYPGRPIKP 189 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIE 242 K + I +LVA+++P L + +VTV+D G LLT A + + I G+ L Q ++ + Sbjct: 190 KQIQGIANLVASSIPELQVENVTVVDQKGNLLTTGIAEDKDLLIAGQHLEYTQKVEDGMI 249 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 M + + L+ LG NF++ V A+++ + E V++PD RS + ++ + + P Sbjct: 250 MRVRRLLSPILGDQNFKTEVAADIDFTEIEQAEEVFNPDLPAVRSEQTVEEQRIGSGA-P 308 Query: 303 ESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + + + + NYE++ T + +L Sbjct: 309 GGIPGALTNQPPADGQAPEQAGQGGEGAGGQPSNTRSQAVRNYELDRTVSYTKREKGRLR 368 Query: 356 RLSIA-VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RL++A V+ +K + G L +V A G ++ RGD++ I + FL Sbjct: 369 RLTVAVVIDDKKTINPETGAVERTQWTQQELERFAILVRDAVGYSAVRGDSVNILNEAFL 428 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + +I + + + + + + + + K E Sbjct: 429 PEPAIEVLDDLPFWQNES---ILKLIKPIAGALIIVALLVGLVRPVLKSLAVAGVKTREQ 485 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 ++ + + ++ + L + +Q + + Sbjct: 486 DEAKEMAALQAAGMDGFDSLSDETVTLTGGDALALPSPE--------EGYEQQLNAVKGL 537 Query: 535 IEINEERFAKILRKWARSE 553 + + R A+++++W E Sbjct: 538 VAEDAGRVAQVIKRWINEE 556 >gi|193066388|ref|ZP_03047436.1| flagellar M-ring protein FliF [Escherichia coli E22] gi|194429948|ref|ZP_03062458.1| flagellar M-ring protein FliF [Escherichia coli B171] gi|301327725|ref|ZP_07220930.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1] gi|192925973|gb|EDV80619.1| flagellar M-ring protein FliF [Escherichia coli E22] gi|194412037|gb|EDX28349.1| flagellar M-ring protein FliF [Escherichia coli B171] gi|300845725|gb|EFK73485.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1] gi|320198628|gb|EFW73228.1| Flagellar M-ring protein FliF [Escherichia coli EC4100B] gi|323158583|gb|EFZ44597.1| flagellar M-ring protein FliF [Escherichia coli E128010] gi|323183922|gb|EFZ69309.1| flagellar M-ring protein FliF [Escherichia coli 1357] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI +I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|322655518|gb|EFY51826.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322683020|gb|EFY79036.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|323204454|gb|EFZ89460.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 531 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 124/556 (22%), Positives = 223/556 (40%), Gaps = 52/556 (9%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86 + + +A + +P Y L+ L D I L++ NI +R ++ +I VP Sbjct: 1 MAGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVP 60 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 + V + R+ LA QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ Sbjct: 61 ADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETL 118 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDM 204 + +ARVH+ MP F + P+ASV + A+ HLV++AV L Sbjct: 119 GPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPP 178 Query: 205 GDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263 G+VT++D +G LLT + R++ L ++ I+ I L+ +G N + V Sbjct: 179 GNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVT 238 Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP------- 313 A+L+ ++ E Y P+ ++ S+ SE P N P Sbjct: 239 AQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAP 298 Query: 314 --------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++ E SNYE++ T + +ERLS+ Sbjct: 299 IATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSV 358 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN L + + +I + A G + +RGDT+ + + F Sbjct: 359 AVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNT 414 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ A +L+ ++ L A+R + ++ Sbjct: 415 GGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEETKAAQEQAQ 470 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + ++D R R+ + V Q R+ M + + Sbjct: 471 VR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDP 515 Query: 540 ERFAKILRKWARSEIE 555 A ++R+W ++ E Sbjct: 516 RVVALVIRQWMSNDHE 531 >gi|332343664|gb|AEE56998.1| flagellar M-ring protein FliF [Escherichia coli UMNK88] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|205360218|ref|ZP_02681717.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350665|gb|EDZ37296.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 579 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 229/572 (40%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV +L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVASLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + + ++ E SNYE++ Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579 >gi|218705431|ref|YP_002412950.1| flagellar MS-ring protein [Escherichia coli UMN026] gi|293405421|ref|ZP_06649413.1| fliF [Escherichia coli FVEC1412] gi|298381064|ref|ZP_06990663.1| flagellar M-ring protein [Escherichia coli FVEC1302] gi|218432528|emb|CAR13421.1| flagellar basal-body MS-ring and collar protein [Escherichia coli UMN026] gi|291427629|gb|EFF00656.1| fliF [Escherichia coli FVEC1412] gi|298278506|gb|EFI20020.1| flagellar M-ring protein [Escherichia coli FVEC1302] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLMAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|312973845|ref|ZP_07788017.1| flagellar M-ring protein FliF [Escherichia coli 1827-70] gi|310332440|gb|EFP99675.1| flagellar M-ring protein FliF [Escherichia coli 1827-70] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|327193018|gb|EGE59930.1| flagellar M-ring protein [Rhizobium etli CNPAF512] Length = 563 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 289/564 (51%), Positives = 392/564 (69%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + + N +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT ++YK+E+L Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSKTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + A Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVTGNGASAVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA + Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563 >gi|307312476|ref|ZP_07592110.1| flagellar M-ring protein FliF [Escherichia coli W] gi|306907647|gb|EFN38150.1| flagellar M-ring protein FliF [Escherichia coli W] gi|315061238|gb|ADT75565.1| flagellar basal-body MS-ring and collar protein [Escherichia coli W] gi|323378185|gb|ADX50453.1| flagellar M-ring protein FliF [Escherichia coli KO11] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|124265758|ref|YP_001019762.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1] gi|124258533|gb|ABM93527.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1] Length = 567 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 123/571 (21%), Positives = 222/571 (38%), Gaps = 49/571 (8%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F +L R L + + + A + + +Y LY L D I LS Sbjct: 21 FGSRLAALPAGRKFTLGIGLAALVGIAFAMSMWSSQGNYKVLYAGLSDKDGGAILAQLST 80 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ +D G++I VP+ V R+ LA+ GLP S G+EL D FG T F + + Sbjct: 81 MNVPYKHADGGAAILVPADKVHDVRLKLASAGLPK-GSIVGFELMDNA-KFGQTQFQERL 138 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 T R LEGE+ R+I +++ + +ARVH+ +P+ F + +P+ASV++ Sbjct: 139 TFQRGLEGELTRSIGALAAVQSARVHLALPNQNGFFREQQKPSASVLLTLHPGRTLDRTQ 198 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMN 244 I HLV+++VP +D VTVLD+TG L++ + + + L V I+ Sbjct: 199 IAGIVHLVSSSVPEMDPKAVTVLDATGALISGAGDAGSAGGLDAQQLQYVGQIEGNYTKR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK---------VERSIRLSKDAQ 295 + L LG DN R+ V AE++ + Y P+ +A Sbjct: 259 VFDILEPVLGRDNLRAQVTAEVDFSQTESTSEAYAPNQGLGADGKPAAATLRSHQVSEAS 318 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTKS 344 ++QP N P V + ++E +NYE++ Sbjct: 319 GGGSAQPAGVPGAASNQPPVPATAPVNGSAQPLQTAQSGGGSGGNSRREATTNYEVDKTV 378 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 T + ++RL+ AVV+N +T+ G+++ + ++ +V G N+ RGD Sbjct: 379 RVTRNATGTIKRLNAAVVLNHRSVTDAKGKTSTTPISAEEMEKLTALVKETIGFNADRGD 438 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ++ + + F + + + T+ + +++ F + + Sbjct: 439 SVKLINAPFKVEKPPVEEALPLWKQPETQDLLRTLAVPGALTLLAMIIVFGAVRPALK-- 496 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + P + +D AL S S + + V Sbjct: 497 ----------------AAQPAQPQRQLDAVVDDVPALPSP----SSAQAAALPALEAPVV 536 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + + N A I+R W+ E Sbjct: 537 DTRLNQARALAKENPAAMANIVRGWSAKEAA 567 >gi|190890348|ref|YP_001976890.1| flagellar M-ring protein [Rhizobium etli CIAT 652] gi|190695627|gb|ACE89712.1| flagellar M-ring protein [Rhizobium etli CIAT 652] Length = 563 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 289/564 (51%), Positives = 393/564 (69%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V + I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + + N +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + + A Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA + Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563 >gi|13472585|ref|NP_104152.1| flagellar MS-ring protein [Mesorhizobium loti MAFF303099] gi|14023331|dbj|BAB49938.1| flagellar basal-body MS-ring protein; FliF [Mesorhizobium loti MAFF303099] Length = 549 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 221/552 (40%), Positives = 328/552 (59%), Gaps = 7/552 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q+ + G R+ +LA + ++ + + A ++N P YD LYV L+ +DVN+I Sbjct: 3 EQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIG 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + L EA I F + +G+S+ VP+ +AR+ LA +GLP+S +N+GYELFD V + GLTS Sbjct: 63 LVLGEAGIGFDVGSDGTSVLVPAGTTAQARMLLAEKGLPTS-ANAGYELFDNVGAMGLTS 121 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FMQ+ITRVRALEGEIARTIQSISGI AARVHIVM + +FR+ +P+ASV+IR Sbjct: 122 FMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDA 181 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEM 243 KSA++IRHLVAAAVP L VTVLDS G LL A + N ++L + Q ++ +I Sbjct: 182 EKSAQSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGD 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 NI +AL +LG DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + S Q Sbjct: 242 NIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQAS 301 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + +VEQN+P P++ D+KEE +NYEIN+K IAT + Y + ++SIAVVV Sbjct: 302 TPASVEQNLPETQATSTEGPQTTSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVV 361 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N+ RL +LG+ A +I +AEI K+V++ATG++ +RGD I +++++F++ L Sbjct: 362 NQDRLKTILGKDATPEQIAKRVAEIQKMVTSATGLDDKRGDVIDVSAVEFID-GLDGEAI 420 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 Q +D + +H T+INA F+V LV F GL + + Sbjct: 421 PQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTARATPALSGPNFDEVQRS 480 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + I ++ + +L+ +I RL M+++NEER A Sbjct: 481 LPTPEAAASADAGAAIGALPGSRPGTNPLDDLRQKIRPA----PQERLARMVDLNEERTA 536 Query: 544 KILRKWARSEIE 555 +ILRKWA E+ Sbjct: 537 QILRKWAAQEVA 548 >gi|324114219|gb|EGC08192.1| flagellar M-ring protein FliF [Escherichia fergusonii B253] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 238/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPRIPLIVAGSAAVAVIVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D +G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKATPDGK----PLPLSAEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + +++A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNTSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ + AV L ++ + +NQ + + + Sbjct: 471 AVRPQLTRRVEAVKAVQQQAQAR-QEVEDAVEVRLSKDEQLQQRRANQRMSAEMMS---- 525 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552 >gi|110642044|ref|YP_669774.1| flagellar MS-ring protein [Escherichia coli 536] gi|191173305|ref|ZP_03034835.1| flagellar M-ring protein FliF [Escherichia coli F11] gi|110343636|gb|ABG69873.1| flagellar M-ring protein [Escherichia coli 536] gi|190906422|gb|EDV66031.1| flagellar M-ring protein FliF [Escherichia coli F11] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|118593642|ref|ZP_01551018.1| flagellar M-ring protein [Stappia aggregata IAM 12614] gi|118433753|gb|EAV40414.1| flagellar M-ring protein [Stappia aggregata IAM 12614] Length = 537 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 137/552 (24%), Positives = 244/552 (44%), Gaps = 18/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + +LG RI + +V + + +F F V +P LY +L + D I Sbjct: 1 MNGLVEFIKTLGAARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAIVSQ 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + F I+ G+SI VP+ V + R+ LAA+GLP+ S GYE+FD+ ++ G TSF+ Sbjct: 61 LESQGVQFEIARQGASILVPNEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGATSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RA+EGE++RTI S+ I AARVH+V+P+ F+K P+AS+++ Sbjct: 120 QNINHLRAMEGELSRTIGSLDRIRAARVHLVIPERQLFQKDRRPPSASIVLNVRGALGPG 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEM 243 A++HLVA AV L+ V+++D +G+LL + N+ + + ++ + Sbjct: 180 EIRAVQHLVATAVDGLEPDRVSIVDESGRLLASGVGNDEDGLLTNSLQERTVEVEGRLRN 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L + +G R V AE++ + +DPD +V RS + ++A + + Sbjct: 240 QIEEILNSVVGPGRARVRVNAEVDYNRLTETTETFDPDGQVVRSTQSKEEASSAVSRN-- 297 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P+ + + EE NYEI+ + + K++RLS+AV+V Sbjct: 298 GQVTVANQLPNADA--GQGGAERDTSSVTEEIVNYEISHSTRTEVVEAGKIKRLSVAVLV 355 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + + G S + L I +V +A G +S RGD + + ++ F + Sbjct: 356 DGTYQPDGNGGSTYTPRSQETLDRIAVLVRSAVGFDSERGDVVEVVNLQFALPPQDDLLA 415 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 S D V + +++ + L R + K+ + Sbjct: 416 ESDSLFDFTRNDIIRFAELGVLFLIAVMLLLFVVRPLLRRIVTPEEKQPQELMIGPDGTL 475 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 I + V D ++ Q ++ + S ++ MI+ + Sbjct: 476 VIETEVPQEEAVEDEFVIEWLEQ----------AKQEGAMQASSIAKVGDMIKDHPTEAV 525 Query: 544 KILRKWARSEIE 555 I+R W + Sbjct: 526 TIVRGWLDEQAA 537 >gi|317048599|ref|YP_004116247.1| flagellar M-ring protein FliF [Pantoea sp. At-9b] gi|316950216|gb|ADU69691.1| flagellar M-ring protein FliF [Pantoea sp. At-9b] Length = 571 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 126/546 (23%), Positives = 228/546 (41%), Gaps = 55/546 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I L++ NI ++ ++NG ++ VP+ V + R+ LA QG Sbjct: 48 WAKAPDYRVLYSNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKVHELRLRLAQQG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL DK FG++ F +++ RALEGE+ARTI+++ + +AR+H+ MP Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARIHLAMPKP 165 Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV ++ +A+ H+V+++VP L G+VTV+D G+LLT Sbjct: 166 TLFVREQKAPSASVTLNLQPGRALDEGQIQAVVHMVSSSVPGLPPGNVTVVDQAGRLLTR 225 Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ E + L ++ + I L +G N + V A+LN D + + Y Sbjct: 226 SDSEGRDLNDAQLKYTAEVEGRYQQRIEAILNPIVGQGNVHAQVTAQLNFDRSEQTDEKY 285 Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV--------------- 320 P+ + S S+ SE + P N P ++ Sbjct: 286 QPNGSPDNSAIRSRQTSTSEQNGSPYPGGVPGALSNQPAPANTAPVTNPPANNANGQNAN 345 Query: 321 ------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 S + ++++ NYE++ T + ++RLS+AVVVN Sbjct: 346 GQNNAANGTNTSTTQNSGPSNSRRDDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNYR-- 403 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + + D + +I + A G + RGD+I + + F + Sbjct: 404 --ADDKGKEVALNDQQIKQIEDLTREAMGYSQTRGDSINVVNSPFNMTEPAGGDLP---- 457 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 F +++A +L+ L+ L +R ++ + Sbjct: 458 FWQQQSFFDQLMSAGRWLLVALVAFILYRKLVRPQIMRKREQEQAAAEAAAARATAQEEE 517 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + ++D R +R+++ V Q R+ M E + A ++R+ Sbjct: 518 QAYSVQ---------LSKDELDQERKSTNRMSAEVMSQ---RIRDMSENDPRVVALVIRE 565 Query: 549 WARSEI 554 W +E+ Sbjct: 566 WMSNEL 571 >gi|289208337|ref|YP_003460403.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix] gi|288943968|gb|ADC71667.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix] Length = 552 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 113/552 (20%), Positives = 213/552 (38%), Gaps = 26/552 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + R L L ++ I++ +A ++ P Y L+ ++E + + ALS+A Sbjct: 16 IREFNGMPAGRQLALLGMLAGAIVVIVAVLYWAFRPTYVPLFPRMESEEAAEVVQALSQA 75 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I +++ + VP V +AR+ LA++GLP S + G+EL + G + ++ Sbjct: 76 GISYQVDATTGQVKVPQGDVAEARLQLASEGLPRSG-DVGFELLQEDTGLGTSRMVEGAR 134 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSA 188 RA+EGE+ART+ S+ + ARVHI + F + +ASV++ Sbjct: 135 FHRAMEGELARTVASLDAVERARVHIAQAEQSVFVRDRRPASASVVVHLRGSRSLSDSQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNIN 246 AI HLVA++ L+ VTV+D G+LLT + + LS + ++ I+ Sbjct: 195 AAIVHLVASSTSELEAERVTVVDQRGRLLTQDGADRGGMASSDRLSFSREVEQRYAERIH 254 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 LA +G D R V A+++ + E +YDP++ RS + +D + P Sbjct: 255 DLLAPIVGSDKVRVQVNADIDFSQVERTEELYDPETIALRSEQTREDERTGMDGGPAGVP 314 Query: 307 TVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P P L + NYE++ + + R+S AV Sbjct: 315 GALTNQPPEGGAVEDPEGEMAPAPLPTSRSANVTRNYEVDRRINHIREAPGGIRRVSTAV 374 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VV+ G + + L I +V A G + RGDT+ + + F Sbjct: 375 VVDFREQVGEDGATESVARDAEELERIEALVREAVGFSEARGDTLNVVTAPFEAPAEEMI 434 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + F ++ L+ L++ + + + + L+ Sbjct: 435 EDEVPFWSQS---WFLEMVKIGAGLLLALILLLTVVRPALKQLMASPPRDRRADQQRALT 491 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + +A + + + + M+ + +R Sbjct: 492 DESDDDSAGAPAGSQSAVAALTGPKGPDQQEMD-------------LEAVREMVREDPKR 538 Query: 542 FAKILRKWARSE 553 A++++ W + Sbjct: 539 VAQVMKTWLGDD 550 >gi|82543597|ref|YP_407544.1| flagellar MS-ring protein [Shigella boydii Sb227] gi|81245008|gb|ABB65716.1| FliF [Shigella boydii Sb227] gi|320186947|gb|EFW61661.1| Flagellar M-ring protein FliF [Shigella flexneri CDC 796-83] gi|332096898|gb|EGJ01887.1| flagellar M-ring protein FliF [Shigella boydii 3594-74] Length = 552 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 130/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT +N R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTSRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|331653350|ref|ZP_08354355.1| flagellar M-ring protein FliF [Escherichia coli M718] gi|331049448|gb|EGI21520.1| flagellar M-ring protein FliF [Escherichia coli M718] Length = 552 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFVDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|74312478|ref|YP_310897.1| flagellar MS-ring protein [Shigella sonnei Ss046] gi|73855955|gb|AAZ88662.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar protein [Shigella sonnei Ss046] gi|323168943|gb|EFZ54623.1| flagellar M-ring protein FliF [Shigella sonnei 53G] Length = 552 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI + S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYCFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|320175473|gb|EFW50572.1| Flagellar M-ring protein FliF [Shigella dysenteriae CDC 74-1112] Length = 552 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ + AV L ++ + +NQ + + + Sbjct: 471 AVRPQLTSRAEAMKAVQQQAQAR-EEVEDAVEVRLSKDEQLQQRRANQRLGAEIMS---- 525 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552 >gi|256017869|ref|ZP_05431734.1| flagellar MS-ring protein [Shigella sp. D9] gi|332278895|ref|ZP_08391308.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9] gi|332101247|gb|EGJ04593.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9] Length = 552 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSSTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|300904828|ref|ZP_07122654.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1] gi|301305281|ref|ZP_07211378.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1] gi|300403255|gb|EFJ86793.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1] gi|300839487|gb|EFK67247.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1] gi|315257230|gb|EFU37198.1| flagellar M-ring protein FliF [Escherichia coli MS 85-1] Length = 552 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNPAAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V +++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQALARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|26248206|ref|NP_754246.1| flagellar MS-ring protein [Escherichia coli CFT073] gi|227885633|ref|ZP_04003438.1| flagellar MS-ring protein [Escherichia coli 83972] gi|300975548|ref|ZP_07173059.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1] gi|301050702|ref|ZP_07197563.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1] gi|306814239|ref|ZP_07448405.1| flagellar MS-ring protein [Escherichia coli NC101] gi|26108610|gb|AAN80813.1|AE016762_66 Flagellar M-ring protein [Escherichia coli CFT073] gi|227837206|gb|EEJ47672.1| flagellar MS-ring protein [Escherichia coli 83972] gi|300297625|gb|EFJ54010.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1] gi|300410317|gb|EFJ93855.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1] gi|305852398|gb|EFM52849.1| flagellar MS-ring protein [Escherichia coli NC101] gi|307553951|gb|ADN46726.1| flagellar M-ring protein FliF [Escherichia coli ABU 83972] gi|315290255|gb|EFU49633.1| flagellar M-ring protein FliF [Escherichia coli MS 153-1] Length = 552 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|302185562|ref|ZP_07262235.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae 642] Length = 594 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 120/586 (20%), Positives = 221/586 (37%), Gaps = 56/586 (9%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 85 AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQR 264 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L LG D +++ V A ++ + ++PD RS + + QRS S Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSGSSSGG 323 Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329 N P Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388 + + N+E++ T +L RLS+AVVV+ T G + LA Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ ++ F + F ++ V ++ Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + K+ G G + ND ++L + Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ + R A+++++W ++ Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594 >gi|331683490|ref|ZP_08384091.1| flagellar M-ring protein FliF [Escherichia coli H299] gi|331079705|gb|EGI50902.1| flagellar M-ring protein FliF [Escherichia coli H299] Length = 552 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDKGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ + + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|158422251|ref|YP_001523543.1| flagellar MS-ring protein [Azorhizobium caulinodans ORS 571] gi|158329140|dbj|BAF86625.1| flagellar M-ring protein [Azorhizobium caulinodans ORS 571] Length = 559 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 202/561 (36%), Positives = 301/561 (53%), Gaps = 13/561 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +QL + + LG R++ L + + + +++ P + LY L DV Sbjct: 1 MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI AL +A I F +S +G+++ V S +AR+ LA +GLP SSS SGYELF+ V SF Sbjct: 61 TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSS-SGYELFNDVRSF 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+T+VRALEGEIARTIQ++ GI AARVHIV+PD GSFR+ TASV+IR Sbjct: 120 GLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQH 239 N + +A+AIRHLVAAA+P + + +VTVL++ G +LT+ E + ++ Q + Sbjct: 180 NSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E E I + L FLG+ NF +V + LN D I E YDP SK ERS R+ K+ +++ Sbjct: 240 ETEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + TV+QN+P + EN ++EE +N+EI+T+ T D Y +E LSI Sbjct: 300 RSQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VNK RLT + + + I ++VS+A G + RGD + + ++ F + Sbjct: 360 AVLVNKERLTGTKDGTPLETQTYE----IEQLVSSAAGFDKERGDKLKVVAVPFADGGNN 415 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 +++ ++L R T++NA+ LV +L+ + GL R ++ Sbjct: 416 MEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAA 475 Query: 480 LSPPPISSAVTTGLMPN-------DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + P T L D + + S NL + S V++ RL Sbjct: 476 MLAAPTELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLE 535 Query: 533 HMIEINEERFAKILRKWARSE 553 MIE +EE+ A ILR+W E Sbjct: 536 QMIEYDEEQAAAILRQWLHQE 556 >gi|331647532|ref|ZP_08348624.1| flagellar M-ring protein FliF [Escherichia coli M605] gi|330911744|gb|EGH40254.1| flagellar M-ring protein FliF [Escherichia coli AA86] gi|331043256|gb|EGI15394.1| flagellar M-ring protein FliF [Escherichia coli M605] Length = 552 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRILFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V +++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQALARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|91211156|ref|YP_541142.1| flagellar MS-ring protein [Escherichia coli UTI89] gi|215487138|ref|YP_002329569.1| flagellar MS-ring protein [Escherichia coli O127:H6 str. E2348/69] gi|218558795|ref|YP_002391708.1| flagellar MS-ring protein [Escherichia coli S88] gi|237705897|ref|ZP_04536378.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA] gi|300940393|ref|ZP_07154978.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|312967135|ref|ZP_07781353.1| flagellar M-ring protein FliF [Escherichia coli 2362-75] gi|91072730|gb|ABE07611.1| flagellar M-ring protein [Escherichia coli UTI89] gi|215265210|emb|CAS09600.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O127:H6 str. E2348/69] gi|218365564|emb|CAR03291.1| flagellar basal-body MS-ring and collar protein [Escherichia coli S88] gi|226900654|gb|EEH86913.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA] gi|294491623|gb|ADE90379.1| flagellar M-ring protein FliF [Escherichia coli IHE3034] gi|300454787|gb|EFK18280.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|307626586|gb|ADN70890.1| flagellar MS-ring protein [Escherichia coli UM146] gi|312288599|gb|EFR16501.1| flagellar M-ring protein FliF [Escherichia coli 2362-75] gi|323952431|gb|EGB48304.1| flagellar M-ring protein FliF [Escherichia coli H252] gi|323956334|gb|EGB52077.1| flagellar M-ring protein FliF [Escherichia coli H263] Length = 552 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|218549263|ref|YP_002383054.1| flagellar MS-ring protein [Escherichia fergusonii ATCC 35469] gi|218356804|emb|CAQ89432.1| flagellar basal-body MS-ring and collar protein [Escherichia fergusonii ATCC 35469] gi|325497680|gb|EGC95539.1| flagellar MS-ring protein [Escherichia fergusonii ECD227] Length = 552 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 238/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPRIPLIVAGSAAVAVIVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEVSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D +G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKATPDGK----PLPLSAEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + +++A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNTSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ + AV L ++ + +NQ + + + Sbjct: 471 AVRPQLTRRVEAVKAVQQQAQAR-QEVEDAVEVRLSKDEQLQQRRANQRMSAEMMS---- 525 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552 >gi|222084850|ref|YP_002543379.1| flagellar M-ring protein [Agrobacterium radiobacter K84] gi|221722298|gb|ACM25454.1| flagellar M-ring protein [Agrobacterium radiobacter K84] Length = 559 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 269/554 (48%), Positives = 381/554 (68%), Gaps = 6/554 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+ F++ +LGRTR+L LA V ++ + L + A +VN P + LYV L+ +D+ Sbjct: 1 MNLLNQLVPLFRNLQNLGRTRLLTLAGVGILSVALVLFAALYVNKPAQETLYVGLDATDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EA I+F++ +G+S++VP+ M GKAR LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISIALAEAKINFQVGADGTSLTVPTGMTGKARALLAERGLP-NSTNAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI RTI SISGI AARVHIVM D+G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTITSISGISAARVHIVMQDVGNFRKADQKPTASVMIRAN 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + K+A+AIRHLVA+AVP L++ DVT+LDSTG+LL + + + N ++L IVQ +Q Sbjct: 180 AEAARKAAQAIRHLVASAVPGLEVDDVTILDSTGQLLASGDDQSNGALNRNLGIVQNVQG 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A+LN D+QQ++E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EIASNIDKALAPFLGMDNFRSSVTAQLNTDSQQVQETTYDPESKVERSVRTTKEAQKSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 Q ++A TVEQN+P + + P S + TDK+EEQ+NYEIN+K+ AT ++Y++E+LS Sbjct: 300 RQSDTAATVEQNIPQAAPQAGGNGPTSNDQTDKREEQTNYEINSKTTATVRNSYRIEKLS 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVN+GR+ +++G+ AD K+D+Y+AE+ KIV+ A G++ RGD +T+ +MDFL+ QL Sbjct: 360 VAVVVNRGRIAQMVGQPADPAKVDAYIAEMQKIVATAAGLDPSRGDVVTVNAMDFLDTQL 419 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD---AKKGEVG 475 + ++ MD+LSR+ A +IN+L F+ +L+ +LG L R A G Sbjct: 420 LDDNASGLNIMDVLSRNIAGIINSLAFVAVAVLIIWLGFRPLIRSLGGGANGTALPDAAG 479 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + P LM + D S N V + + RL M+ Sbjct: 480 LELPDFAPGAVGGPGAALMDGFGSDFGFDSTDDLLTMGEDNSTFNRRVKEGPERRLSRMV 539 Query: 536 EINEERFAKILRKW 549 EI+EER AKILRKW Sbjct: 540 EISEERAAKILRKW 553 >gi|86748397|ref|YP_484893.1| flagellar MS-ring protein [Rhodopseudomonas palustris HaA2] gi|86571425|gb|ABD05982.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris HaA2] Length = 532 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 133/551 (24%), Positives = 230/551 (41%), Gaps = 26/551 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQSLLGFLKGLGAARVMAMIAVTMALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + ++G+ + VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE++RTI++I + AARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244 AIRHLVA+AV L V+++D G+LL + + + Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRMRNE 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +++ +G R V A+ + + +DP+ +V RS + ++ +++TS + Sbjct: 240 IEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QAQTSAADG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VTV +P + + + K EE +NYEI+ + + ++ RLS+AV+V+ Sbjct: 298 QVTVNNELPGNQA--PGGAGARDQSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + G + L I +V +A G + +RGD I + ++ F E Sbjct: 356 GSYTKDEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLRFAEAPQVEKLPE 415 Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + +I V V L+V F+ + L + D G ++ Sbjct: 416 PAGLLGMLQFTKDDIMNMIQLGVMFVLGLVVLFMVIRPLVKRVLASDPASEASGLPALAD 475 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 S +++ V QS R+ + E N Sbjct: 476 GSLPQIGSDGQAGT----------------SMIDIAQVQGQVHAQSVHRVGELAERNPNE 519 Query: 542 FAKILRKWARS 552 A I+R+W Sbjct: 520 TAAIVRQWLAE 530 >gi|323977881|gb|EGB72967.1| flagellar M-ring protein FliF [Escherichia coli TW10509] Length = 552 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ + + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNNGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + +++A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|320194349|gb|EFW68980.1| Flagellar M-ring protein FliF [Escherichia coli WV_060327] Length = 552 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPGGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|205360167|ref|ZP_02835012.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340693|gb|EDZ27457.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 579 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVASSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSNNSNNAGPRNTQRNETSNYEVDRT 390 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 447 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579 >gi|209919360|ref|YP_002293444.1| flagellar MS-ring protein [Escherichia coli SE11] gi|293446318|ref|ZP_06662740.1| flagellar M-ring protein FliF [Escherichia coli B088] gi|209912619|dbj|BAG77693.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli SE11] gi|291323148|gb|EFE62576.1| flagellar M-ring protein FliF [Escherichia coli B088] Length = 552 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI +I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|218699502|ref|YP_002407131.1| flagellar MS-ring protein [Escherichia coli IAI39] gi|218369488|emb|CAR17255.1| flagellar basal-body MS-ring and collar protein [Escherichia coli IAI39] Length = 552 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDELLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|194365657|ref|YP_002028267.1| flagellar MS-ring protein [Stenotrophomonas maltophilia R551-3] gi|194348461|gb|ACF51584.1| flagellar M-ring protein FliF [Stenotrophomonas maltophilia R551-3] Length = 548 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 117/553 (21%), Positives = 224/553 (40%), Gaps = 21/553 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V + + F+ P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLFVFFWSQKPGMVPLYTGLDQKATAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F++ I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 73 DLLRAAQIPFQLDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI H+VAA++P+L VTV+D +G++L+ ++ V+ + Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S+ + T Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NSTTTP 309 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P ++ + K NYE++ T +++R+S+A Sbjct: 310 GPQGVPGATSNSPPGQAAAPATAQTPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 368 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ A Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G L+ V L + F L R + K E + Sbjct: 429 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDEQALEPHT 483 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 L+ +D + L + D S + ++ ++ + + Sbjct: 484 --------ADVQLVDDDGMPLPALGADRASLGGPDALALPVDSYEERLRMAREAVKTDSK 535 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 536 RVAQVVKGWVAND 548 >gi|323961982|gb|EGB57581.1| flagellar M-ring protein FliF [Escherichia coli H489] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F ++ ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSEESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|260868531|ref|YP_003234933.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O111:H- str. 11128] gi|257764887|dbj|BAI36382.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O111:H- str. 11128] gi|323180809|gb|EFZ66349.1| flagellar M-ring protein FliF [Escherichia coli 1180] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 239/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFREQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V + + + AV L ++ + +NQ + + + Sbjct: 471 AVRPQLTRRAEAMKAVQ-QQAQAHEEVEDAVEVRLSKDEQLQQRRANQRLGAEVMS---- 525 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552 >gi|146307847|ref|YP_001188312.1| flagellar MS-ring protein [Pseudomonas mendocina ymp] gi|145576048|gb|ABP85580.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp] Length = 594 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 118/586 (20%), Positives = 229/586 (39%), Gaps = 55/586 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + R L L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGLDATQVVETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A I++ + N ++ V + + +AR+ LAA G+ + ++ G+E+ D+ G + FM+ Sbjct: 85 NAAGINYTVEPNSGALLVKADDLSRARLRLAAAGVAPTDNSVGFEILDREQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 R LEGE+ART+ S++ + AARVH+ MP F + +P+ASV++ Sbjct: 145 ATRYRRGLEGELARTVSSLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD G VTV+D G LL+ + E + GK + ++ Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMETLFTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + + +++PD RS + + ++S + P+ Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323 Query: 304 SAVTVEQNMP----------------------------------HVSDRKVPLPRSLENT 329 N P P+ Sbjct: 324 GVPGALSNQPPGAAAAPEQAGGAAGAAGPVAPGQPLVDANGQQITDPITGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS VV ++ R+ G + LA Sbjct: 384 KREQSTRNFELDRSISYTKQQQGRLRRLSVAVVVDDQVRVDPATGEANRVPWSADDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V + G ++ RGD++++ + F + + + ++G Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWD-------IVKQVLG 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L + L LR + N G A G + D ++L + Sbjct: 497 VLFILVLVFGVLRPVLNNITGGGKGKGLAETGDVELGEMAGLDGELSEDRVSLGGPQSIL 556 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + ++ + R A+++++W ++ Sbjct: 557 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 594 >gi|15802373|ref|NP_288399.1| flagellar MS-ring protein [Escherichia coli O157:H7 EDL933] gi|15831931|ref|NP_310704.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. Sakai] gi|168751866|ref|ZP_02776888.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4113] gi|168758251|ref|ZP_02783258.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4401] gi|168764438|ref|ZP_02789445.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4501] gi|168771544|ref|ZP_02796551.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4486] gi|168777364|ref|ZP_02802371.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4196] gi|168783334|ref|ZP_02808341.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4076] gi|168790304|ref|ZP_02815311.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869] gi|168802284|ref|ZP_02827291.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508] gi|195939244|ref|ZP_03084626.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. EC4024] gi|208810543|ref|ZP_03252419.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4206] gi|208817037|ref|ZP_03258157.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4045] gi|208820542|ref|ZP_03260862.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4042] gi|209395809|ref|YP_002271054.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4115] gi|217328740|ref|ZP_03444821.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. TW14588] gi|254793588|ref|YP_003078425.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. TW14359] gi|261227567|ref|ZP_05941848.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254609|ref|ZP_05947142.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. FRIK966] gi|12516042|gb|AAG56953.1|AE005416_7 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Escherichia coli O157:H7 str. EDL933] gi|13362145|dbj|BAB36100.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli O157:H7 str. Sakai] gi|187767394|gb|EDU31238.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4196] gi|188014158|gb|EDU52280.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4113] gi|188999271|gb|EDU68257.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4076] gi|189354893|gb|EDU73312.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4401] gi|189359720|gb|EDU78139.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4486] gi|189365550|gb|EDU83966.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4501] gi|189370217|gb|EDU88633.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869] gi|189375710|gb|EDU94126.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508] gi|208725059|gb|EDZ74766.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4206] gi|208731380|gb|EDZ80069.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4045] gi|208740665|gb|EDZ88347.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4042] gi|209157209|gb|ACI34642.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC4115] gi|209766878|gb|ACI81751.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766880|gb|ACI81752.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766882|gb|ACI81753.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|209766886|gb|ACI81755.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|217318087|gb|EEC26514.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. TW14588] gi|254592988|gb|ACT72349.1| flagellar basal-body MS-ring and collar protein [Escherichia coli O157:H7 str. TW14359] gi|320191912|gb|EFW66559.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC1212] gi|326342348|gb|EGD66129.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1044] gi|326344853|gb|EGD68600.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1125] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|218689933|ref|YP_002398145.1| flagellar MS-ring protein [Escherichia coli ED1a] gi|291283115|ref|YP_003499933.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7 str. CB9615] gi|293415248|ref|ZP_06657891.1| flagellar M-ring protein FliF [Escherichia coli B185] gi|301644603|ref|ZP_07244592.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|331677820|ref|ZP_08378495.1| flagellar M-ring protein FliF [Escherichia coli H591] gi|209766884|gb|ACI81754.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli] gi|218427497|emb|CAR08270.1| flagellar basal-body MS-ring and collar protein [Escherichia coli ED1a] gi|290762988|gb|ADD56949.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7 str. CB9615] gi|291432896|gb|EFF05875.1| flagellar M-ring protein FliF [Escherichia coli B185] gi|301077078|gb|EFK91884.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|320641786|gb|EFX11174.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. G5101] gi|320647145|gb|EFX15978.1| flagellar MS-ring protein [Escherichia coli O157:H- str. 493-89] gi|320652429|gb|EFX20727.1| flagellar MS-ring protein [Escherichia coli O157:H- str. H 2687] gi|320658031|gb|EFX25793.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658603|gb|EFX26297.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. USDA 5905] gi|320668501|gb|EFX35328.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. LSU-61] gi|331074280|gb|EGI45600.1| flagellar M-ring protein FliF [Escherichia coli H591] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|320182746|gb|EFW57630.1| Flagellar M-ring protein FliF [Shigella boydii ATCC 9905] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +R V ++ ++ ++D R R Sbjct: 471 TVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGTEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|256022404|ref|ZP_05436269.1| flagellar MS-ring protein [Escherichia sp. 4_1_40B] gi|301029395|ref|ZP_07192489.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1] gi|299877699|gb|EFI85910.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ + + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|191168288|ref|ZP_03030081.1| flagellar M-ring protein FliF [Escherichia coli B7A] gi|190901660|gb|EDV61416.1| flagellar M-ring protein FliF [Escherichia coli B7A] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVNQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|331657984|ref|ZP_08358946.1| flagellar M-ring protein FliF [Escherichia coli TA206] gi|331056232|gb|EGI28241.1| flagellar M-ring protein FliF [Escherichia coli TA206] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAQAVKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|323968354|gb|EGB63761.1| flagellar M-ring protein FliF [Escherichia coli M863] gi|327253070|gb|EGE64724.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v] Length = 552 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ +P F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + +++A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|330808215|ref|YP_004352677.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376323|gb|AEA67673.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 594 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 117/586 (19%), Positives = 224/586 (38%), Gaps = 55/586 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSEMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + A+I + + N ++ V + V +AR+ LAA G+ + N G+E+ DK G + FM+ Sbjct: 85 ASADIPYTVEPNSGALLVKADDVARARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI S++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 205 GQVLAIINLVATSVPELSKSQITVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG D +++ V A+++ + ++PD RS + + QR+ ++ P+ Sbjct: 265 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSV-NEQRTASNGPQ 323 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329 N P Sbjct: 324 GVPGALSNQPPSPASAPQTTGGATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS+AVVV+ + G ++ LA Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDQVKVNAANGETSRAPWSADELARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G ++ RGD++++ ++ F + + ++G Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSLERGEVVADIPFYSQPWFWDVVKQ-------VLG 496 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L + L LR + N G + ND ++L + Sbjct: 497 VLFILVLVFGVLRPVLNNITGGGKSKQLAGFGDVELGGMGGLDGELANDRVSLGGPQSIL 556 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + ++ + R A+++++W ++ Sbjct: 557 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 594 >gi|307138605|ref|ZP_07497961.1| flagellar MS-ring protein [Escherichia coli H736] gi|331642559|ref|ZP_08343694.1| flagellar M-ring protein FliF [Escherichia coli H736] gi|331039357|gb|EGI11577.1| flagellar M-ring protein FliF [Escherichia coli H736] Length = 552 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALAREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ + + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|300818642|ref|ZP_07098850.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] gi|300528814|gb|EFK49876.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] Length = 552 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|260844337|ref|YP_003222115.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O103:H2 str. 12009] gi|257759484|dbj|BAI30981.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia coli O103:H2 str. 12009] Length = 552 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI +I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMMQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|254522751|ref|ZP_05134806.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14] gi|219720342|gb|EED38867.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14] Length = 547 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 115/553 (20%), Positives = 221/553 (39%), Gaps = 22/553 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L L ++I V + ++ F+ P LY L+ + Sbjct: 13 EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F + I+VP + AR+ LA GL + S G+EL ++ FG++ Sbjct: 73 DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV + Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI H+VAA++P+L VTV+D +G++L+ ++ V+ + Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + + RS ++S+ + T Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NSTTTP 309 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P+ N P ++ + K NYE++ T +++R+S+A Sbjct: 310 GPQGVPGATSNSPPGQQAAPATAQAPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 368 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ G+ A Q + L + +V A G N+ RGDT+++ + F+ + Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 G L+ V L + F L R + Sbjct: 429 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQKKNDEQALEPHTA 483 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 L+ +D + L + D S + ++ ++ + + Sbjct: 484 DVQ---------LVDDDGMPLPALGADRASLGGPDALALPVDSYEERLRMAREAVKTDSK 534 Query: 541 RFAKILRKWARSE 553 R A++++ W ++ Sbjct: 535 RVAQVVKGWVAND 547 >gi|148253400|ref|YP_001237985.1| flagellar MS-ring protein [Bradyrhizobium sp. BTAi1] gi|146405573|gb|ABQ34079.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. BTAi1] Length = 535 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 131/549 (23%), Positives = 229/549 (41%), Gaps = 21/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R+ + +V I F V +P L+ L + D + I Sbjct: 1 MQGLLDFLKGLGAARLTAMIAVTAALIGFFGFVIMRVTAPQMTTLFTDLGMDDSSSIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQGIPFEIRNEGSVILVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVVRVRGALDAA 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AIRHLVA+AV L V+++D G+LL + + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNTFEKRMRKQVE 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 +++ +G R + A+ + + YDP+ +V RS + ++ +S +S+ V Sbjct: 240 DIVSSVVGAGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREE--QSASSESNGQV 297 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV +P + + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 298 TVNNELPGNQQNQQQQQPPRDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGA 357 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G + + L I +V +A G + +RGD + + ++ F + Sbjct: 358 YSKNEKGELVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADAPTVPQINEPS 417 Query: 427 SFMDILS---RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 F+ +L VI V ++ ++V F+ + L + D + Sbjct: 418 GFLGMLQFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIIASDEVAAALKSAVPALT- 476 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + + + + +++ V QS R+ + + N A Sbjct: 477 --------------DETAQAQAHAQQTATLIDVAQVQGQVHAQSVHRVGELADRNPGEAA 522 Query: 544 KILRKWARS 552 I+R+W Sbjct: 523 AIIRQWLAE 531 >gi|324005863|gb|EGB75082.1| flagellar M-ring protein FliF [Escherichia coli MS 57-2] Length = 552 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAVQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F ++ ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSEESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|323948358|gb|EGB44345.1| flagellar M-ring protein FliF [Escherichia coli H120] Length = 552 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|312946531|gb|ADR27358.1| flagellar MS-ring protein [Escherichia coli O83:H1 str. NRG 857C] Length = 552 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAVQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|148266223|ref|YP_001232929.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4] gi|146399723|gb|ABQ28356.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4] Length = 525 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 124/560 (22%), Positives = 244/560 (43%), Gaps = 49/560 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + + +L + LI+A V + ++ F A N Y L+ L D Sbjct: 1 MQEGFKKLLEPFLTLPPAKRLIVAGVAVASLVAFAALIVVANKTDYRPLFANLTTEDAGE 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + + ++I+ +G +I VPS V R+ LA++GLP G+E+FD+ N FG+ Sbjct: 61 IVKKLKDQKVPYQIAADGKAILVPSDKVYDLRLSLASEGLPQGGG-VGFEIFDRKN-FGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI ++G+ ARVH+ + + F+ TASV+++ + Sbjct: 119 TEFVQKLNYQRALQGELSRTIAQLAGVEQARVHLAIAEKSLFKDNEKPTTASVVLKMKSN 178 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237 + + HLVA+++ +D +VTVLDS GK+L+ A+++ + + Sbjct: 179 HTLRENEVQGVVHLVASSIEGMDPENVTVLDSRGKMLSKVGASDLTSKMTSTMQETQRTY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +E + L +G + V A + + E YDP+S RS + S++ Sbjct: 239 EKNLEDRLQTLLDKVVGTGKSVARVSATFDFKQVEKYEERYDPESAAVRSEQRSEEK-GG 297 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++ V+ NM + V K +E NYE++ + + ++ Sbjct: 298 ASTVAAGVPGVQSNMAKAAPAGVTSGGG----SKSDETLNYEVSRSTARIIEPVGSMNKV 353 Query: 358 SIAVVVNKGRLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 S+A++V+ + ++ Q + L +I +V +A G N+ RGD +T+ ++ Sbjct: 354 SVAILVDGKYVAPASAKEGATAKAKYQPRTPDELQKIEALVKSAVGFNAERGDQVTVANI 413 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F E + + + + ++ L+ +G + FL + L + Sbjct: 414 PFQETDDGGASDQDKWWNAPIMQ---ALLKNLLIALGFFALLFLVIRPLLKTLK------ 464 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 P +A T +P D+ A+ + +++ L Sbjct: 465 ------------PHKAASTFQPLPEDDAAMQLAEVHKQQLEMQSLNQLE----------L 502 Query: 532 LHMIEINEERFAKILRKWAR 551 + ++ + + A+IL+ W Sbjct: 503 IEKVKQDPYQVAQILQNWLS 522 >gi|323186814|gb|EFZ72134.1| flagellar M-ring protein FliF [Escherichia coli RN587/1] Length = 552 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDETQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAVGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|315296472|gb|EFU55769.1| flagellar M-ring protein FliF [Escherichia coli MS 16-3] Length = 552 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ L QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLTQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRTLDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|309795955|ref|ZP_07690368.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7] gi|308120405|gb|EFO57667.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7] Length = 552 Score = 367 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L +G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPLGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|307131589|ref|YP_003883605.1| flagellar M-ring protein fliF [Dickeya dadantii 3937] gi|306529118|gb|ADM99048.1| Flagellar M-ring protein fliF [Dickeya dadantii 3937] Length = 573 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 128/587 (21%), Positives = 229/587 (39%), Gaps = 66/587 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY L D I L Sbjct: 13 KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + NI +R +++G++I +PS V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 73 GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 +I RALEGE+ART++++ I ARVH+ +P F + P+A+V + Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 AI +LV+++V L VTV+D TGKLLT N+ + L ++ + Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 I L +G N + V A+++ +++ + Y P+ ++ S+ +S+ Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310 Query: 299 --------TSQPESAVTVEQNMPH-----------------------VSDRKVPLPRSLE 327 ++ P A T + P + + Sbjct: 311 VGGVPGALSNTPTPAPTAPISTPPANNANNANNANNANNANANTAGTNTQTSAGNAANQT 370 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 + ++ NYE++ T + ++RLS+AVVVN G+ A D L + Sbjct: 371 YNSRHDQTINYEVDRTIRHTKQNTGNVQRLSVAVVVNY--TQGEDGKPA--ALNDDQLKK 426 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 I +V + G ++ RGDT+ + + F F + +L+ Sbjct: 427 IEALVRESMGFSNDRGDTLNVVNTPFTITDATGGELP----FWQKQAFFDLLTEVGRWLL 482 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 ++ L +R + + L VT M + Sbjct: 483 VLIVGWILYRKLVRPQLQRRAQVQEAAEAAASLRGQDADVTVTLSTMEEE---------- 532 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R + R ++ + Q R+ + E + A ++R W +E+ Sbjct: 533 ---LQRKSEQRAHAEMHSQ---RVRELAENDPRVVALVIRHWMSNEL 573 >gi|83747628|ref|ZP_00944664.1| FliF [Ralstonia solanacearum UW551] gi|207739709|ref|YP_002258102.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609] gi|83725680|gb|EAP72822.1| FliF [Ralstonia solanacearum UW551] gi|206593091|emb|CAQ59997.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609] Length = 611 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 130/553 (23%), Positives = 235/553 (42%), Gaps = 47/553 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + A+P+ASV+++ +AI HLV+++VPNL + +VTV+D +G+LL+ Sbjct: 184 PSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLLS 243 Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 + + + L+ V+ I+ I L +G DN R+ V A++++D + Sbjct: 244 SSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMAE 303 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322 Y P+ + S S ++ N P + R +P Sbjct: 304 TYRPNQDPANGVVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQAAA 363 Query: 323 --------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + ++ NYE++ T + RLS+AVV Sbjct: 364 GQNGQNAPNGQQQAAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGIVRRLSVAVV 423 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN + D+ + ++N +V A G +++RGD++ + + F + Sbjct: 424 VNYRA-----DGKTWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPTSRD 478 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE--VGGKSIL 480 + + + + +G L++ F + L R N + VG + Sbjct: 479 DLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFVGREGDD 538 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 PI + P +S D + L ++ +Q + + + N Sbjct: 539 PNAPIITGAAAPAGPGLEGPSSASAADGDAVPEELPQLKQNHEFEQKLETMRRIAQQNPR 598 Query: 541 RFAKILRKWARSE 553 A ++++W E Sbjct: 599 AVAAVIKQWVSIE 611 >gi|324013493|gb|EGB82712.1| flagellar M-ring protein FliF [Escherichia coli MS 60-1] Length = 552 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ + D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNISDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|218695543|ref|YP_002403210.1| flagellar MS-ring protein [Escherichia coli 55989] gi|218352275|emb|CAU98032.1| flagellar basal-body MS-ring and collar protein [Escherichia coli 55989] Length = 552 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNEGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ + + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552 >gi|300923899|ref|ZP_07139914.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1] gi|300419862|gb|EFK03173.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1] Length = 552 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKEARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|292487992|ref|YP_003530869.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|292899212|ref|YP_003538581.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291199060|emb|CBJ46171.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291553416|emb|CBA20461.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|312172117|emb|CBX80374.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158] Length = 573 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 129/550 (23%), Positives = 232/550 (42%), Gaps = 58/550 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV ++ A+ H+V+++V + G+VTV+D +G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQSGRLLT 223 Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ + L ++ + I L LG N + V A+++ + ++ + Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV-------------- 320 Y P++ +R S+ S N P ++ Sbjct: 284 YSPNTNPDRQAIRSRQTSNSEQLGGPSAGGVPGALSNQPAPANAAPVTTANPNANNANAA 343 Query: 321 ----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +++ ++ + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 NAANANNGQPANNAASGAQKTVPSSTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVN 403 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 DS + +I + A G + +RGD++ + + F +N + Sbjct: 404 ----FRTDAAGKPIALKDSQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP 459 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + + F LV +V +L L LRR A + G S Sbjct: 460 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAGNALRSSTQD 519 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 AV S ++D + R Q R+++ V Q R+ M E + A Sbjct: 520 EGVAV-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVAL 563 Query: 545 ILRKWARSEI 554 ++R+W + E+ Sbjct: 564 VIRQWMKDEL 573 >gi|56413118|ref|YP_150193.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362044|ref|YP_002141681.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127375|gb|AAV76881.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093521|emb|CAR58982.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 563 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 17 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 76 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 77 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 134 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 135 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 195 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 254 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 255 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 314 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 315 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 374 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 375 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 430 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 431 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 486 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 487 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 534 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 535 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 563 >gi|205357292|ref|ZP_02346550.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322643|gb|EDZ10482.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 585 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 126/578 (21%), Positives = 227/578 (39%), Gaps = 58/578 (10%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 33 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 93 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN---------------------------TDKKEEQSN 337 N P + + ++ E SN Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTSTSTSTNSNSAGPRSTQRNETSN 390 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 YE++ T + +ERLS+AVVVN L + + +I + A G Sbjct: 391 YEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMG 446 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + +RGDT+ + + F ++ A +L+ ++ L Sbjct: 447 FSDKRGDTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWR 502 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 A+R + ++ + + ++D R Sbjct: 503 KAVRPQLTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQ 550 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 551 RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 585 >gi|310767344|gb|ADP12294.1| flagellar MS-ring protein [Erwinia sp. Ejp617] Length = 569 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 122/546 (22%), Positives = 231/546 (42%), Gaps = 54/546 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV ++ A+ H+V+++V + G+VTV+D G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223 Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ + L ++ + I L LG N + V A+++ + ++ + Sbjct: 224 QNDSGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLP----------- 323 Y P+S+ ++ S+ S S N P ++ P Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343 Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 +++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR-- 401 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 D+ + +I + A G + +RGD++ + + F +N + Sbjct: 402 --ADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP---- 455 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + NA +L+ ++ L + ++ +I + + Sbjct: 456 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAINAARSSTR- 514 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 D S ++D + R Q R+++ V Q R+ M E + A ++R+ Sbjct: 515 --------DEGVAVSLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563 Query: 549 WARSEI 554 W + E+ Sbjct: 564 WMKDEL 569 >gi|259908758|ref|YP_002649114.1| flagellar MS-ring protein [Erwinia pyrifoliae Ep1/96] gi|224964380|emb|CAX55889.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|283478734|emb|CAY74650.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163] Length = 569 Score = 366 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 122/546 (22%), Positives = 231/546 (42%), Gaps = 54/546 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F +++ RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV ++ A+ H+V+++V + G+VTV+D G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223 Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ + L ++ + I L LG N + V A+++ + ++ + Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLP----------- 323 Y P+S+ ++ S+ S S N P ++ P Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343 Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 +++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR-- 401 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 D+ + +I + A G + +RGD++ + + F +N + Sbjct: 402 --ADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP---- 455 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + NA +L+ ++ L + ++ +I + + Sbjct: 456 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKATEEAAINAARSSTR- 514 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 D S ++D + R Q R+++ V Q R+ M E + A ++R+ Sbjct: 515 --------DEGVAVSLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563 Query: 549 WARSEI 554 W + E+ Sbjct: 564 WMKDEL 569 >gi|299068777|emb|CBJ40017.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CMR15] Length = 611 Score = 366 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 129/553 (23%), Positives = 232/553 (41%), Gaps = 47/553 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F++++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+ASV+++ +AI HL+A++VP+L + +VTV+D +G+LL+ Sbjct: 184 PSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLLS 243 Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 A + + L+ V+ I+ I L LG DN R+ V A++++D + Sbjct: 244 AAFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGDDNVRAQVTADVDLDNTEQMAE 303 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322 Y P+ S S ++ N P + R +P Sbjct: 304 TYRPNQDPANGAVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPAAQQAAA 363 Query: 323 ---------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + + ++ +NYE++ T + RLS+AV Sbjct: 364 GQNGQNGQNGQQQGAAGTGQAAANSVESSARDITTNYEVDKTVRRTRAAVGTVRRLSVAV 423 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN + D+ + ++N +V A G +++RGD++ + + F + Sbjct: 424 VVNYRA-----DGKTWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPTSK 478 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK-GEVGGKSIL 480 + + + + +G L++ F + L R N D G+ Sbjct: 479 DDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPATATFVGREGE 538 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P + S++ D L S +Q + + + N Sbjct: 539 DPNAPIITGAAAPAGPELEGPSSASIDGDDIPEELPQLKQSRDFEQKLETMRRVAQQNPR 598 Query: 541 RFAKILRKWARSE 553 A ++++W +E Sbjct: 599 AVAAVIKQWVSNE 611 >gi|254504967|ref|ZP_05117118.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] gi|222441038|gb|EEE47717.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] Length = 548 Score = 366 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 207/555 (37%), Positives = 314/555 (56%), Gaps = 10/555 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R++ LA + L I A F+++ P LY L DV Sbjct: 1 MPGREHAEKLWANLMELGMRRLIALALIGLATIATVGAGAFYLSRPETTPLYTGLTGEDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI AL +A I F +S G ++ V KAR+ LA +GLP +NSGYELFD + S Sbjct: 61 SRIGSALRDAGIPFDVSSEGDAVMVSHGQTAKARMLLAEKGLPR-GANSGYELFDDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+ P+ASV+IR+ Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 P ++A+AIRHLVAA VP ++ VTVLD+TG +L A + ++ + A+ + Sbjct: 180 IPDDVRTADAIRHLVAAGVPGMEAAKVTVLDTTGGILAAGKDPTKASAGQMATLETAVSN 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ N+ K L +LG+DNF+ +V A+LN D + I E ++DPDS++ERS+R ++ + +E Sbjct: 240 RIQENVRKTLTPYLGLDNFQVSVAAKLNTDRKMIAETIFDPDSRIERSVRTIRENENAEN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S + VT EQN+P + RSLE T+++EE NYEI++K I T+ D Y+++RLSI Sbjct: 300 SSAATPVTAEQNLPDENVEADGGERSLEETERREETVNYEISSKRIETSQDGYRVDRLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V++ RL LG S Q +I+ + EI +V+++ G+ RGD + I+ +DF++ Sbjct: 360 AVLVDRTRLAASLGGSPTQSQIEEQVREIEALVASSAGVTEERGDLVKISVVDFVDGGRD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + L R +INAL L ++LV + GL + + + Sbjct: 420 LEPIPPIGVTEYLLRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQVSSEQAEMAEIG 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 L P + A + + +L +NS +K + +L ++E NE Sbjct: 480 LLPEGLEDAADAMDGETGFL--------MPPDHSDLLHDLNSKRNKSALKKLESLLEFNE 531 Query: 540 ERFAKILRKWARSEI 554 E+ A ILR+W Sbjct: 532 EQSAAILRQWLYDTE 546 >gi|296447983|ref|ZP_06889889.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b] gi|296254493|gb|EFH01614.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b] Length = 551 Score = 366 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 193/553 (34%), Positives = 312/553 (56%), Gaps = 8/553 (1%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D+ Q + LG ++ LA + + + + ++V+ P ++ LY L+ DV+RI Sbjct: 1 MDRFNQLRDNLIGLGPRKLSALALIFTLVLAITGLGAYYVSRPDFEVLYSGLDREDVSRI 60 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L + + F I+ G+++ V +AR+ LA +GLP S +N+GYELFDKV S GLT Sbjct: 61 GAVLKSSGVAFDINPEGNAVLVRYGQTAQARMLLAERGLPQS-ANAGYELFDKVGSLGLT 119 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIV+PD GSFR++ P+ASV+IR +P Sbjct: 120 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVLPDEGSFRRVRQPPSASVVIRTESPD 179 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEI 241 K+A+AIRHLVAA++P + + VTVL++ G LL+A++ + K+L++ + + +I Sbjct: 180 DSKAAQAIRHLVAASIPGMTVDQVTVLNTDGMLLSASDGDATDAAPAKTLTLEKTVSKDI 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI + L +L + NF+ +V A +N D +Q E ++DP+S+VERS+R+ K+ S+ + Sbjct: 240 QDNIRRTLTPYLRLANFQVSVRARINTDRKQTNETIFDPESRVERSVRVVKENSTSQNNS 299 Query: 302 PESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 A +VE+N+P + +S + K EE +N+E++TK++ T Y LE LSIA Sbjct: 300 TSQAASVERNVPQEKPQAGGEGKQSNDENKKSEELTNFELSTKTVTTVSGGYTLENLSIA 359 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+VN+G L + ++ L EI ++V++A G+ RGDT+ ++++DF N+ Sbjct: 360 VLVNRGSLAGSGKDAPKPEALERQLKEIEQLVASAAGVRKDRGDTVKVSAVDFAINENDL 419 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + + L+ +VINA ++ TLL+ F GL R + E + Sbjct: 420 APVEPAGWSEALTHQLGSVINAGALILVTLLLVFFGLRPASRALLAEAPAPMETALADDV 479 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 PP + + + A Q L I +L +IE +E Sbjct: 480 GPPLLGAEPSI----ELPFAPMEMPQFTGQMDTGLIEDIGGREKFNQQKKLEQLIEADEM 535 Query: 541 RFAKILRKWARSE 553 + A IL++W +E Sbjct: 536 QAAAILKQWMYAE 548 >gi|300717231|ref|YP_003742034.1| flagellar basal-body M-ring protein [Erwinia billingiae Eb661] gi|299063067|emb|CAX60187.1| Flagellar basal-body M-ring protein [Erwinia billingiae Eb661] Length = 576 Score = 366 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 121/553 (21%), Positives = 221/553 (39%), Gaps = 57/553 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y LY L D I L++ NI ++ D G ++ VP+ V + R+ LA Sbjct: 44 MALWAKQPEYRVLYNNLSDEDGGAIITQLTQMNIPYQFDDKGGALMVPAEKVHELRLRLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + RVH+ M Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKNVRVHLAM 161 Query: 159 PDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + PTASV + AI H+V+++V L G+VTV+D G L Sbjct: 162 PKPSLFVREQKSPTASVTLTLQPGRALDQGQISAIVHMVSSSVAGLPPGNVTVVDQAGHL 221 Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ R++ L +++ + I L +G N + V A+++ + ++ + Sbjct: 222 LTQSDNAGRDLNDAQLKYATDVENRFQSRIEAILNPIVGTGNVHAQVTAQIDFNAREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+S S+ S P N P ++ Sbjct: 282 EKYQPNSDPSTQAVRSRQTSDSEQIGGQYPGGVPGALSNQPAPANTAPVTTPAANNQNGQ 341 Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 ++ + + + +NYE++ + T + +++RLS+AV Sbjct: 342 NGQNGQNGNAAAANQGSSASTAKAGPSNTRTDNTTNYEVDRTILHTKMNVGEVQRLSVAV 401 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VVN D+ L +I + A G + +RGD++ + + F + + Sbjct: 402 VVNYK----ADAAGKPIALTDAQLKQIENLTREAMGYSDKRGDSLNVVNSPFTVTEDTSD 457 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 ++ +L+ ++ L +R + Sbjct: 458 DVP----FWKQPAFIDQMMELGRWLLVLIVAWILYRKLVRPQLRRKAE-------LEKAA 506 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + A D+ S ++D R Q R+++ V Q R+ M E + Sbjct: 507 VEAAAVAKQAREESGDDAVAVSLSKDEQDQERKSQHRMSAEVMSQ---RIRDMSENDPRV 563 Query: 542 FAKILRKWARSEI 554 A ++R+W + E+ Sbjct: 564 VALVIRQWMKDEL 576 >gi|209547913|ref|YP_002279830.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533669|gb|ACI53604.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 563 Score = 365 bits (937), Expect = 9e-99, Method: Composition-based stats. Identities = 292/564 (51%), Positives = 395/564 (70%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ SLGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EAN+DF++ +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + + N +SL+IVQ +Q Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q +SA TVEQN+P + P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A+GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + + + Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P + A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA E Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563 >gi|238912458|ref|ZP_04656295.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 560 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRSTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 428 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|207856518|ref|YP_002243169.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708321|emb|CAR32624.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 560 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQFFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|17548611|ref|NP_521951.1| flagellar M-ring transmembrane protein [Ralstonia solanacearum GMI1000] gi|17430859|emb|CAD17541.1| probable flagellar m-ring transmembrane protein [Ralstonia solanacearum GMI1000] Length = 611 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 125/554 (22%), Positives = 225/554 (40%), Gaps = 47/554 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAA Sbjct: 65 MLWSRAPSYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP +G+EL + FG + F++++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 125 QGLPKGGL-AGFELM-ENQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182 Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+ASV+++ +AI HL+A++VP+L + +VTV+D +G+LL Sbjct: 183 KPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242 Query: 218 TA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 +A + + L+ V+ I+ I L +G DN R+ V A +++D + Sbjct: 243 SASFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTANVDLDNTEQMA 302 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPE---SAVTVEQNMPHVSDRK------------- 319 Y P+ S S ++ N P + R Sbjct: 303 ETYRPNQDPANGAVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPAAQQAA 362 Query: 320 --------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++ NYE++ T + RLS+ Sbjct: 363 AGQNGQNGQNGQQQGAAAGTGQAAANTAESSARDTTINYEVDKTVRRTRAAVGTVRRLSV 422 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN + D+ + ++N +V A G +++RGD++ + + F Sbjct: 423 AVVVNYRA-----DGKTWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPT 477 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + + + + +G L++ F + L R N D Sbjct: 478 SKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPVTATFVGRE 537 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + S D L ++ +Q + + + N Sbjct: 538 GEDPNAPIITGAAAPAGPELEGPSVVTDGDEVPDELPQLKQNHDFEQKLETMRRVAQQNP 597 Query: 540 ERFAKILRKWARSE 553 A ++++W +E Sbjct: 598 RAVAAVIKQWVSNE 611 >gi|227355980|ref|ZP_03840372.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906] gi|227163968|gb|EEI48870.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906] Length = 573 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 131/587 (22%), Positives = 245/587 (41%), Gaps = 56/587 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +++Q F + + L I +F+AA ++ SP Y LY L D Sbjct: 7 DVVNQKKGFNAIINRIKADPKIPLIIAGSAAIAIFVAAFLWLQSPDYKVLYSNLSDKDGG 66 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ N+ +R+S NGS+I VP + V + R+ LA GLP + +G+EL DK FG Sbjct: 67 EIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQAGLPKGGA-AGFELLDKE-KFG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 ++ F ++I RALEGE+ARTI+++ + ARVH+ +P F + P+ASV + Sbjct: 125 ISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238 AI H+VA++V + +VT++D +GKLLT + R++ L VQ ++ Sbjct: 185 GRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELE 244 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I L +G N + V A+++ + Y P+ ++ SK +SE Sbjct: 245 SRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQVSQSE 304 Query: 299 TSQ---PESAVTVEQNMPHVSDRKV--------------------PLPRSLENTDKKEEQ 335 + N P + + R+ + + +E Sbjct: 305 QNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTAADEKATSTNANRSMTRNPNSNSRLDET 364 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG---------RSADQGKIDSYLA 386 +NYE++ + +ERLS+AV+VN + + + D L Sbjct: 365 TNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKATEGEEPIVENKQVPLTDEQLQ 424 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I +V A G + RGD++++ + F + + IL++ ++ +L Sbjct: 425 QIESLVREAMGYSQERGDSLSVVNSQFNDTEEPVISVPMWENPQILAK----ALDLGRWL 480 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 + ++ L ++ + + + ++ V + + Sbjct: 481 LLVIIAWILWRKLVKPQLEKRREAEVAAQKAILKTKLEVTDDVNEAELDEE--------- 531 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + + R+++ + Q R+ M E + A ++R+W E Sbjct: 532 ---SRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMVIRQWMSKE 572 >gi|197285489|ref|YP_002151361.1| flagellar MS-ring protein [Proteus mirabilis HI4320] gi|194682976|emb|CAR43401.1| flagellar M-ring protein [Proteus mirabilis HI4320] Length = 573 Score = 365 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 131/587 (22%), Positives = 245/587 (41%), Gaps = 56/587 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +++Q F + + L I +F+AA ++ SP Y LY L D Sbjct: 7 DVVNQKKGFNAIINRIKADPKIPLIIAGSAAIAIFVAAFLWLQSPDYKVLYSNLSDKDGG 66 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ N+ +R+S NGS+I VP + V + R+ LA GLP + +G+EL DK FG Sbjct: 67 EIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQAGLPKGGA-AGFELLDKE-KFG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 ++ F ++I RALEGE+ARTI+++ + ARVH+ +P F + P+ASV + Sbjct: 125 ISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238 AI H+VA++V + +VT++D +GKLLT + R++ L VQ ++ Sbjct: 185 GRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELE 244 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I L +G N + V A+++ + Y P+ ++ SK +SE Sbjct: 245 SRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQVSQSE 304 Query: 299 TSQ---PESAVTVEQNMPHVSDRKV--------------------PLPRSLENTDKKEEQ 335 + N P + + R+ + + +E Sbjct: 305 QNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTTADEKTTSTNANRSMTRNPNSNSRLDET 364 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG---------RSADQGKIDSYLA 386 +NYE++ + +ERLS+AV+VN + + + D L Sbjct: 365 TNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKATEGEEPIVENKQVPLTDEQLQ 424 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I +V A G + RGD++++ + F + + IL++ ++ +L Sbjct: 425 QIESLVREAMGYSQERGDSLSVVNSQFNDTEEPVISVPVWENPQILAK----ALDLGRWL 480 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 + ++ L ++ + + + ++ V + + Sbjct: 481 LLVIIAWILWRKLVKPQLEKRREAEVAAQKAILKTKLEVTDDVNEAELDEE--------- 531 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + + R+++ + Q R+ M E + A ++R+W E Sbjct: 532 ---SRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMVIRQWMSKE 572 >gi|299131954|ref|ZP_07025149.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2] gi|298592091|gb|EFI52291.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2] Length = 517 Score = 365 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 119/533 (22%), Positives = 217/533 (40%), Gaps = 24/533 (4%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + +V + + F V +P LY L D + + L I + + ++G+ I Sbjct: 1 MLAVTMALLGFFGFVILRVTAPQMVTLYTDLSYDDASGVMKELDRQGIPYELKNDGAIIM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP V + R+ LA GYE+FDK ++ G TSF+Q + +RALEGE+ARTI+ Sbjct: 61 VPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDTLGSTSFVQNVNHLRALEGELARTIK 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204 SI I A RVH+V+PD F + P+A++++R + AIRHLVA++V L Sbjct: 120 SIDRIQAVRVHLVLPDRPLFSREKPEPSAAIVVRVRGALEPQQVRAIRHLVASSVNGLKP 179 Query: 205 GDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 V+++D G+LL + + A ++ + I + + +G R + Sbjct: 180 QRVSIVDENGQLLADGSGDANGMGDVGADERRIAYENRLRKQIESIVTSVVGAGRARVQL 239 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322 A+ + + +DP+ +V RS + +++ + Q N + ++ Sbjct: 240 SADFDYNKVTETSDKFDPEGRVLRSSQTREESSATSNGQNGQV--TVNNEMPGNQQQNAA 297 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + + K EE +NYEI+ + + +++R+S+AV+V+ G + Sbjct: 298 NAGKDQSKKSEEINNYEISRTTKTEVTEAGRVQRVSVAVLVDGTYSKNEKGDMVYAPRSK 357 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF---MDILSRHFATV 439 L I +V +A G RGD + + ++ F E + Sbjct: 358 EDLERIATLVRSAIGFEKNRGDQVDVVNLRFAEAPAAVPLPEPTGWLSVFQFTKDDVMYF 417 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 I V + ++V F+ + L + +D V P Sbjct: 418 IELGVMSLLAIVVVFMVVRPLVKRVLAEDPPPASVPALPEAEPA---------------- 461 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 A+ + +++ V QS R+ + + N I+R+W Sbjct: 462 AVAGPVHTAATAQMIDVAQVQGQVHAQSVHRVGELADRNPNETVSIIRQWLTE 514 >gi|78047554|ref|YP_363729.1| flagellar MS-ring protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035984|emb|CAJ23675.1| flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 574 Score = 365 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 116/568 (20%), Positives = 232/568 (40%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + + LV V L + F + R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A K + G P ++ D+ + +D ++ ++ I + + Sbjct: 489 VTAVKDKQGKAGKDGTPQS---ADVRMVDEDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +RL ++ + +R A++++ W SE Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573 >gi|90104474|gb|ABD86511.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18] Length = 547 Score = 365 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 130/551 (23%), Positives = 230/551 (41%), Gaps = 19/551 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V I F V +P L+ L V D + I Sbjct: 9 VQGLVSFLKGLGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 69 LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGSTSFV 127 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R + Sbjct: 128 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 187 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMN 244 AIRH+VA+AV L V+++D G+LL + + + Sbjct: 188 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRMRNQ 247 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + +++ +G R + A+ + + +DP+ +V RS + +++ ++ + Sbjct: 248 VEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAANDGQ 307 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N + + + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 308 V--TVNNELPGAQAGAGAAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVLVD 365 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G Q + L I +V +A G + +RGD + + ++ F E Sbjct: 366 GIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPVAE 425 Query: 425 Q---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + VI V ++ L+V F+ + L R + G L+ Sbjct: 426 PGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVRRILAAEPGAAGANGVPALT 485 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 ++ I D + +++ V QS R+ + + N Sbjct: 486 DASGTA-----------IGPDGLPLVAPGPNMIDIAQVQGQVHAQSVHRVGELADRNPNE 534 Query: 542 FAKILRKWARS 552 A I+R+W + Sbjct: 535 TAAIVRQWLQE 545 >gi|289666081|ref|ZP_06487662.1| flagellar MS-ring protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 574 Score = 365 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 115/568 (20%), Positives = 232/568 (40%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312 Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + + LV V L + F + R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A K + G P ++ D+ L +D S ++ ++ I + + Sbjct: 489 VTAVKDKQGKAGKDGTPQS---ADVRMVDEDDELLPHMGEDTASIGQDRKTPIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +R+ ++ + +R A++++ W SE Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|16765307|ref|NP_460922.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|120326|sp|P15928|FLIF_SALTY RecName: Full=Flagellar M-ring protein gi|154023|gb|AAA27096.1| fliF flagellar M-protein precursor [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420504|gb|AAL20881.1| basal-body MS (membrane and supramembrane)-ring and collar protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261247135|emb|CBG24958.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993958|gb|ACY88843.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158483|emb|CBW17993.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912959|dbj|BAJ36933.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|332988858|gb|AEF07841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 560 Score = 365 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|21242698|ref|NP_642280.1| flagellar MS-ring protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108171|gb|AAM36816.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306] Length = 574 Score = 365 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 116/568 (20%), Positives = 233/568 (41%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + + LV V L + F + R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A K + G P ++ +D+ + +D ++ ++ I + + Sbjct: 489 VTAVKDKQGKAGKDGTPQS---ADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +RL ++ + +R A++++ W SE Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573 >gi|224583532|ref|YP_002637330.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468059|gb|ACN45889.1| flagellar M-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 560 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|86356297|ref|YP_468189.1| flagellar MS-ring protein [Rhizobium etli CFN 42] gi|86280399|gb|ABC89462.1| flagellar M-ring protein [Rhizobium etli CFN 42] Length = 563 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 290/564 (51%), Positives = 396/564 (70%), Gaps = 10/564 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+QL+Q FK+ +LGRTR++IL V V I + +AA FVN P + LYV L+ D+ Sbjct: 1 MNLLNQLVQIFKNFGALGRTRLMILGGVGSVSIAIILAAALFVNKPAQETLYVGLDAPDL 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+EANI+F++ +GSSI+VP+ M GKAR+ LA +GLP +S+N+GYELFD V S Sbjct: 61 NQISMALAEANINFQVGTDGSSITVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK +PTASVMIRA Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + +A +IRHLVA+AVP LD+ DVT+LDS G+LL + + N +SL+IVQ +Q Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS+R +K+AQ+S+ Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETVYDPESKVERSVRSTKEAQQSQQ 299 Query: 300 SQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 Q ++A TVEQN+P + P S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+L Sbjct: 300 RQSDNATTVEQNIPQAAPDAGGSGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SIAVVVNKGR+ +++G ADQ KID+YLAE++KIV++A GI+++RGD +T+T+MDFLENQ Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMHKIVASAAGIDAKRGDVVTVTAMDFLENQ 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471 L T V MD+LSR+ A +IN+L F+ +V ++GL L R + + + Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E G + P + A LM + + + N V + + +L Sbjct: 480 PEAAGLELPDFAPAAGAAGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 M+EINEER AKILRKWA + Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563 >gi|29141395|ref|NP_804737.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213646788|ref|ZP_03376841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|29137022|gb|AAO68586.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 560 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 125/572 (21%), Positives = 226/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+ Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|291085209|ref|ZP_06352408.2| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] gi|291072341|gb|EFE10450.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] Length = 557 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 122/569 (21%), Positives = 228/569 (40%), Gaps = 49/569 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGAAAVAIVVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NVPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 RALEGE+ARTI+++ + ARVH+ +P F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKRARVHLALPKPSLFVREQKAPSASVTVNLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D G LLT + + L ++ I+ I Sbjct: 192 SAVTHLVSSAVAGLPPGNVTLVDQAGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRRIES 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS---ETSQPES 304 L+ +G N + V A+L+ ++ E Y P+ +++ S+ S + P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGG 311 Query: 305 AVTVEQNMPHVSDRKV------------------PLPRSLENTDKKEEQSNYEINTKSIA 346 N P ++ + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPANTAPIATPPANQQNAQTTQTTNNSSNAGPRSTQRNETSNYEVDRTIRH 371 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T + ++RLS+AVVVN L + + +I + A G + +RGDT+ Sbjct: 372 TKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLTAEQMKQIEDLTREAMGFSDKRGDTL 427 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + F +++A +L+ L+ L A+R Sbjct: 428 NVVNSPFTATDDSMGELPLW----KQPFFIDQLMSAGRWLLVLLVAWILWRKAVRPQLLR 483 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + ++ + + ++D + R R+ + V Q Sbjct: 484 RSEEAKAAQEQTRIR------------QETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 532 ---RIREMSDNDPRVVALVIRQWMSNDHE 557 >gi|78224304|ref|YP_386051.1| flagellar FliF M-ring protein [Geobacter metallireducens GS-15] gi|78195559|gb|ABB33326.1| Flagellar FliF M-ring protein [Geobacter metallireducens GS-15] Length = 527 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 122/562 (21%), Positives = 235/562 (41%), Gaps = 48/562 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + +L + I+ V+ V I+ F N Y L+ L D I Sbjct: 3 EGLKKLLEPFMALPPAKRWIVGGVVGVSIIAFALLIMVANRTDYRPLFTNLTTEDAGEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E + +RI+ +G +I VPS V R+ +A+ GLP G+E+FD+ N FG+T Sbjct: 63 TKLKEQKVPYRIAADGKAILVPSDKVYDLRLTMASAGLPQGGG-VGFEIFDRKN-FGMTE 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182 F+Q++ RAL+GE++RTI I+G+ ARVH+ +P+ F++ TASV+++ Sbjct: 121 FVQKLNYQRALQGELSRTIGQIAGVEQARVHLAIPEKALFKEDEKPATASVVLKVKGNRQ 180 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239 + + HLVA+++ ++ VTVLD GKLL+ N + + + + + Sbjct: 181 LNDSDVQGVVHLVASSIEGMNPEHVTVLDQKGKLLSKNGPTDAAGKMTASMQEVQRTYER 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + L +G + V A + + E YDP++ V RS + S+++ Sbjct: 241 GTEERLQSLLDKAVGSGKSVARVSAVFDFRQVERYEEKYDPET-VVRSEQRSEESMGGAN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + N+ + N K +E NYE++ + T L ++S+ Sbjct: 300 ATA-GVPGAQTNLGRTPA--GAGGATGPNGSKNDETLNYEVSRSTARTIEPVGALSKVSV 356 Query: 360 AVVVNKGRLTEVLGR------SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 A++V+ +G+ + + L +I +V A G N+ RGD +T+ ++ F Sbjct: 357 AILVDGKYDAPAVGKDGKNAKPKYTPRSPAELQQIEALVKGAVGFNAVRGDQVTVANIPF 416 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + + + F +++ + G L + + L ++ + E Sbjct: 417 QDTAEAGTDEGSQWWNAPI---FLSLLKNGLIGFGFLALLLFVVRPLMKMLKPEKKTSFE 473 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + I+ R + L++ Sbjct: 474 PISTAEETINQIAE----------------------------VHRAQIQNQTIRQVELMN 505 Query: 534 MIEINEERFAKILRKWARSEIE 555 ++ + A+IL+ W R++ + Sbjct: 506 KVKEEPYQAAQILQNWLRAKEQ 527 >gi|304398855|ref|ZP_07380725.1| flagellar M-ring protein FliF [Pantoea sp. aB] gi|304353559|gb|EFM17936.1| flagellar M-ring protein FliF [Pantoea sp. aB] Length = 575 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 137/586 (23%), Positives = 231/586 (39%), Gaps = 57/586 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F L + L I + +A + P Y LY L D I Sbjct: 11 QEKKGFGDLLARLRANPRIPLVIAAAAVIAIVIAMVLWAKQPSYSVLYNNLTDEDGGAIV 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R ++NG ++ VP + V + R+ LA QGLP S G+EL DK FG++ Sbjct: 71 TQLTQMNIPYRFAENGGALMVPEANVHELRLRLAQQGLPKGGS-VGFELLDKE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE+ARTI+S+ + +ARVH+ MP F + P+ASV + Sbjct: 129 FSEQVNYQRALEGELARTIESLGPVKSARVHLAMPKPTLFVREQKAPSASVTLTLQPGRA 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 +AI H+V+++V L G+VTV+D TG+LLT ++ + L ++ Sbjct: 189 LDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRLLTRSDSAGRDLNDAQLKYSSEVEARY 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I L LG N + V A++N DT + + Y P++ S S+ S+ S Sbjct: 249 QQRIEAILNPILGQGNVHAQVTAQINFDTAEQTDEKYQPNANPSNSAIRSRQTSTSDQSG 308 Query: 302 ---PESAVTVEQNMPHV------------------------------SDRKVPLPRSLEN 328 P N P S Sbjct: 309 SPYPGGVPGALSNQPAPANTAPVTTPNNNAANGQAANGQNNAANNASQTTSTAPASSGPT 368 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++++ NYE++ T + ++RLS+AVVVN + + L +I Sbjct: 369 NSRRDDTVNYELDRTIRHTKVNVGDVQRLSVAVVVN----FRADDKGKAVALNEQQLKQI 424 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G + RGD+I + + F + + F +++A +L+ Sbjct: 425 EDLTREAMGYSQSRGDSINVVNSQFNTTEPVTTDLP----FWQQQSFFDQLMDAGKWLLV 480 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L+ L +R A + P + ++D Sbjct: 481 ALVAFVLYRKMVRPHLVRKQAAEKAAAEAVAARAATD--------QPQEEAFNVQLSKDE 532 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R +R+++ V Q R+ M E + A ++R+W E+ Sbjct: 533 LDQERKSNNRMSAEVMSQ---RIRDMSENDPRVVALVIREWMSKEL 575 >gi|327394264|dbj|BAK11686.1| flagellar M-ring protein FliF [Pantoea ananatis AJ13355] Length = 572 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 129/548 (23%), Positives = 226/548 (41%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P+Y L+ L D I L++ N+ +R +DNG ++ VP V + R+ LA Q Sbjct: 47 LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP N G+EL DK FG++ F +++ RALEGE+ARTI+S+ + ARVH+ MP Sbjct: 107 GLPK-GGNVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + +AI H+V+++V L G+VTV+D +G LLT Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224 Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 ++ R++ L ++ + I L LG N + V A++N DT + + Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSL-------- 326 Y P+ + + S+ SE S P N P ++ + Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344 Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 ++++ NYE++ T + ++RLS+AVVVN Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + L +I + A G + +RGD++ + + F + S Sbjct: 405 ----EDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTEPTVSELP-- 458 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F +I+A +L+ L+ L +R + + Sbjct: 459 --FWQQQSFFDQLISAGKWLLVALVAFILYRKTVRPHVLRKKEAEKAAAEAMAARAAQQN 516 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + ++D R +R+++ V Q R+ M E + A ++ Sbjct: 517 ---------DQEAYSVQLSKDEMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564 Query: 547 RKWARSEI 554 R+W +E+ Sbjct: 565 REWMGNEL 572 >gi|309779486|ref|ZP_07674247.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA] gi|308921727|gb|EFP67363.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA] Length = 610 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 124/569 (21%), Positives = 241/569 (42%), Gaps = 45/569 (7%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 L++ + + AA + +P Y LY + SD I AL + N+ +R ++ G+ Sbjct: 50 RLLMMIGGAALVAVIAAAMLWSRAPDYRVLYSNVSDSDGGAIIAALQQMNVPYRFAEGGT 109 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I VP + V +AR+ LA+QGLP +G+EL + FG + F +++ RALEGE+AR Sbjct: 110 AIMVPEASVHEARLKLASQGLPK-GGQAGFELM-ENQKFGTSQFTEQVNYQRALEGELAR 167 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAV 199 TIQ++ + +ARVH+ M F + A+P+ASV+++ +AI HLV+++V Sbjct: 168 TIQAMQEVQSARVHLAMTKPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSV 227 Query: 200 PNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 PNL + +VTV+D +G+LL++ + + LS V+ ++ I L +G DN Sbjct: 228 PNLPLANVTVVDQSGRLLSSSFQDNASGLDPTQLSYVRDVEQGYIKRIEAILGPVVGEDN 287 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPH 314 R+ V A++++D + Y P+ + S + ++ N P Sbjct: 288 VRAQVTADVDLDNTEQMAESYRPNQDPANAAVRSTHTAEATQNKADAQGGVPGALSNQPP 347 Query: 315 VSDRKVPL------------------------------PRSLENTDKKEEQSNYEINTKS 344 + R +P S ++ ++ +NYE++ Sbjct: 348 TAPRMLPTAPAPASASQPAATGPNGQPQQVAAANTGGTAASGNSSSTRDTTTNYEVDKTV 407 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 T + RLS+AVVVN + ++ + ++N +V A G +++RGD Sbjct: 408 RRTRAAVGTVRRLSVAVVVNYR-----GDGKTWKPLSEAEMVKLNALVKDAVGFDAKRGD 462 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ++ + + F + + + + ++ L +G L++ F + R Sbjct: 463 SVNVVNSQFSGTLPMSKDDLPLWKQPDMIQYAIQAAKYLALAIGFLILVFAVIRPAIRSM 522 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 DA P + ++ D + ++ + Sbjct: 523 GEKDAPATPTFVGREGEDPNAPIITGAAASAGPELEGPAAGAD-SEELPDALPQLKNNDF 581 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + + + N A ++++W +E Sbjct: 582 EKKLETMRRVAQSNPRAVAAVIKQWVSNE 610 >gi|322833196|ref|YP_004213223.1| flagellar M-ring protein FliF [Rahnella sp. Y9602] gi|321168397|gb|ADW74096.1| flagellar M-ring protein FliF [Rahnella sp. Y9602] Length = 569 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 118/547 (21%), Positives = 225/547 (41%), Gaps = 55/547 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y L+ L D I L++ NI ++ SDNG ++ +P+ V + R+ LA Sbjct: 44 MMLWAKQPTYKVLFSNLGDQDGGAIVTQLTQMNIPYQFSDNGGALLIPADKVYETRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A GLP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + +ARVH+ + Sbjct: 104 AAGLPKGGA-VGFELMDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVSSARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV ++ AI ++V+++V L +VTV+D +G L Sbjct: 162 PKPSLFVREQKNPSASVTLNLQPGRALDDGQINAIVYMVSSSVSGLPPANVTVVDQSGHL 221 Query: 217 LTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT ++ + L ++ ++ I L +G N + + A+++ +++ + Sbjct: 222 LTQSDNNGRDLNASQLKYANEVEGRLQRRIESILQPVVGNGNVHAQITAQIDYASREQTD 281 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSL------ 326 Y P+ +++ S+ S+ N P + Sbjct: 282 ENYQPNGSADKAAVRSRQLSTSDQIGASSVGGVPGALSNQPAPAATAPVTNPPAANNANG 341 Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + +++E +NYE++ T H ++RLS AVVVN Sbjct: 342 TQNQTGNNAQNAATTANANVPSNRRRDETTNYEVDRTITHTQHSAGAVQRLSAAVVVNYQ 401 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + + D L +I+ +V A G + RGDT+ + + F E + Sbjct: 402 VGPDGKAK----PLTDDQLKKIDDLVREAMGFSQERGDTLNVVNTPFNEAADDSGELP-- 455 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F ++NA +L+ ++ L +R + A+K ++ + P Sbjct: 456 --FWKQQAFFDQLLNAGRWLLVLIVAWLLWRKMVRPMLRKQQAEKDAAAAAALAATMPQP 513 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + ND + +Q S + R+ + + + A ++ Sbjct: 514 EGSKPVKLSNDELEKRKRSQQRVS-------------VEVQTQRVQELADKDPRIVALVI 560 Query: 547 RKWARSE 553 R+W +E Sbjct: 561 RQWMSTE 567 >gi|222033677|emb|CAP76418.1| flagellar M-ring protein [Escherichia coli LF82] Length = 552 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAVQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGLHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + ++ A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + V Q R+ M + + A ++R+W ++ E Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|311279120|ref|YP_003941351.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1] gi|308748315|gb|ADO48067.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1] Length = 556 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 127/537 (23%), Positives = 219/537 (40%), Gaps = 48/537 (8%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y L+ L D I L + NI +R +D+G +I VP+ V + R+ LA QG Sbjct: 45 WAKSPDYRTLFSNLSDQDGGAIVTQLQQMNIPYRFADSGGAIEVPADKVHELRLRLAQQG 104 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + ARVH+ MP Sbjct: 105 LPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKGARVHLAMPKP 162 Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + A+ HLV++AV L G+VT++D G LLT Sbjct: 163 SLFVREQKLPSASVTLNLEPGRALDEGQIAAVVHLVSSAVAGLPPGNVTLVDQAGHLLTQ 222 Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + L ++ I+ I L+ +G N + V A+LN D ++ E Y Sbjct: 223 SNTGARDLNDAQLKYASDVEGRIQRRIETILSPIVGNGNVHAQVTAQLNFDNKEQTEEQY 282 Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV--------------- 320 P+ +++ S+ SE P N P + Sbjct: 283 RPNGDSSQAVLRSRQVNESEQIGSPYPGGVPGALSNSPAPAPNAPISTPPANQNNGQQQT 342 Query: 321 --PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 S + E SNYE++ T + ++RLS+AVVVN L + Sbjct: 343 TSTTNASGPRNTSRNETSNYEVDRTIRHTKTNIGDVQRLSVAVVVNYKNLPDGK----PL 398 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +I + A G + +RGDT+ + + F Sbjct: 399 PLTADQMKQIEDLTREAMGYSDKRGDTLNVVNSQFSAGDETGGELP----FWKQQSFIDQ 454 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 +++A +L+ ++ L A+R + ++ + + Sbjct: 455 LMSAGRWLLVLIVAWLLWRKAIRPQLARRQEEAKVAQEEARVQREMADA----------- 503 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+++ V Q R+ M + + A ++R+W ++ E Sbjct: 504 -VEVRLSKDEQHQQRRTNQRLSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 556 >gi|300696960|ref|YP_003747621.1| FliF: flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CFBP2957] gi|299073684|emb|CBJ53204.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum CFBP2957] Length = 616 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 125/558 (22%), Positives = 229/558 (41%), Gaps = 52/558 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+ASV+++ +AI HL++++VPNL + +VTV+D +G+LL+ Sbjct: 184 PSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLSSSVPNLPLANVTVVDQSGRLLS 243 Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 + + + L+ V+ I+ I L +G DN R+ V A++++D + Sbjct: 244 SSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMAE 303 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRK-------------- 319 Y P+ + S S S+ N P + R Sbjct: 304 TYRPNQDPANGVVRSTHTSESTQSKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQAAA 363 Query: 320 -----------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + ++ NYE++ T + R Sbjct: 364 GQNGQNGQNGPNAQNGQQQGAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGTVRR 423 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AVVVN + D+ + ++N +V A G +++RGD++ + + F Sbjct: 424 LSVAVVVNYRA-----DGKTWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGT 478 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEVG 475 + + + + + +G L++ F + L R N + Sbjct: 479 LPTSKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFV 538 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G+ P + +S D + L ++ +Q + + Sbjct: 539 GREGDDPNAPIITGAAAPAGPELEGPSASAADGNAVPEELPQLKQNHEFEQKLETMRRIA 598 Query: 536 EINEERFAKILRKWARSE 553 + N A ++++W E Sbjct: 599 QQNPRAVAAVIKQWVSIE 616 >gi|320085412|emb|CBY95193.1| Flagellar M-ring protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 560 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVASSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSNNSNNAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 428 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|319781672|ref|YP_004141148.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167560|gb|ADV11098.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 548 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 223/552 (40%), Positives = 327/552 (59%), Gaps = 8/552 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q+ + G R+ +LA + ++ + + A ++N P YD LYV L+ +DVN+I Sbjct: 3 EQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIG 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + L EA I F + +G+S+ VP+ +AR+ LA +GLP+S +N+GYELFD V S GLTS Sbjct: 63 LVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPTS-ANAGYELFDNVGSLGLTS 121 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FMQ+ITRVRALEGEIARTIQSISGI AARVHIVM + +FR+ +P+ASV+IR Sbjct: 122 FMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDA 181 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEM 243 KSA +IRHLVAAAVP L VTVLDS+G LL A + N ++L + Q ++ +I Sbjct: 182 EKSAMSIRHLVAAAVPGLSADKVTVLDSSGNLLAAGDDPSNTSAARTLGVEQTVEAQIGD 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 NI +AL A+LG DNFR++V AE+N DT+Q E ++DP+S+VERS++ + + + Q Sbjct: 242 NIRRALTAYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENNNQKQAS 301 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + +VEQN+P P+S D++EE +NYEIN+K IAT + Y + ++SIAVVV Sbjct: 302 TPASVEQNLPETQATATDGPQSSSQNDRREEITNYEINSKKIATVSNGYTVTKMSIAVVV 361 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N+ RLT +LG+ A +I +AEI K+V++ATG++ +RGD I +++++F++ L Sbjct: 362 NQQRLTTILGKDATPEQIAKRVAEIQKMVTSATGLDEKRGDIIDVSAVEFID-GLDGEAI 420 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 Q +D + +H T+INA F+V LV F GL + A + Sbjct: 421 PQAGMLDSIGQHAGTMINAGAFIVVVFLVAFFGLRPMAAALTAKAAPALAGPSFDDVQRS 480 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + AL + + + RL M+++NEER A Sbjct: 481 LPTPEAMAATDNAAVGALPGTR-----PGPTPLDDLRQKIRPAPQDRLARMVDLNEERTA 535 Query: 544 KILRKWARSEIE 555 +ILRKWA E+ Sbjct: 536 QILRKWASQEVA 547 >gi|39995518|ref|NP_951469.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA] gi|39982281|gb|AAR33742.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA] gi|298504518|gb|ADI83241.1| flagellar M-ring mounting plate protein FliF [Geobacter sulfurreducens KN400] Length = 527 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 125/563 (22%), Positives = 235/563 (41%), Gaps = 49/563 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + +L + ++ V+ + ++ F N Y L+ L D I Sbjct: 3 EALNKLIQPFMALPPAKRWVVGGVVGLSVIAFTILILVANRTDYRPLFTNLTSEDAGEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E + +RI+ +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+T Sbjct: 63 TKLKEQKVPYRIAADGKAILVPSDKVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGMTD 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F+Q++ RAL+GE++RTI ISG+ ARVH+V+P+ F++ TASV+++ Sbjct: 121 FVQKLNYQRALQGELSRTISQISGVEQARVHLVIPEKSLFKEDEKPATASVVLKVKGQRQ 180 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239 + I HLVA+A+ ++ VTVLD GKLL+ N + + + +A + Sbjct: 181 LRENDVQGIVHLVASAIEGMNPEHVTVLDQKGKLLSKNTPGDAAGKMTASMQEVQRAYER 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + L +G + V A + + E YDP++ V R + S Sbjct: 241 STEERLQSLLDKAVGAGKSVARVSAVFDFRQVERYEEKYDPETVVRSEQRSEEKQDGSTV 300 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + V+ N+ + + K +E NYE++ + T L ++S+ Sbjct: 301 T--GGVPGVQTNLGRTAGQPAGTSGGG---SKNDETLNYEVSRATARTIEPVGTLSKVSV 355 Query: 360 AVVVNKGRLTEVLGR------SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 A++V+ G+ + L +I+ +V ++ G N RGD +T+ ++ F Sbjct: 356 AILVDGKYDAAAAGKDGKEAKPKYTPRSPDELQKIDALVKSSVGFNVERGDQVTVVNIPF 415 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + +G + + F +++ + G L + + L + + + E Sbjct: 416 QDTGDVGAGEADKWWNAPI---FLSLLKNGLIGFGFLALLLFVVRPLLKTLKPEKSTSFE 472 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + + R+ S + L++ Sbjct: 473 ----------------------------PIPSAEDALNQIAEIHRLQIGNQTVSQMELIN 504 Query: 534 MIEINEERFAKILRKWARSEIED 556 I+ + A+I++ W R + E+ Sbjct: 505 KIKQEPYQAAQIIQNWLRDKGEE 527 >gi|118589973|ref|ZP_01547377.1| flagellar M-ring protein [Stappia aggregata IAM 12614] gi|118437470|gb|EAV44107.1| flagellar M-ring protein [Stappia aggregata IAM 12614] Length = 548 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 207/553 (37%), Positives = 310/553 (56%), Gaps = 10/553 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R++ LA + L I A ++++ P LY L+ DV Sbjct: 1 MPGREHAEKLWANLMELGVRRLVALALIGLATIATVGAGAYYLSRPEQTVLYTGLDGEDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI AL +A I F I+ G+++ V + KAR+ LA +GLP +NSGYELFD++ S Sbjct: 61 TRIGSALRDAGIPFDINSEGTAVMVSHAQTAKARMLLAEKGLPR-GANSGYELFDELGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+ P+ASV+IR+ Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 P ++A+AIRHLVAA VP + VTVLD++G +L A + L+ + A+ + Sbjct: 180 VPDDVRTADAIRHLVAAGVPGMQADKVTVLDTSGGILAAGKDPTKASAGQLASLETAVSN 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ NI K L +LG+DNF+ +V AELN D + I E ++DPDS+ ERSIR ++ + ++ Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAAELNTDRKTIAETIFDPDSRTERSIRTIRENENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S + TVEQN+P RS E +++EE NYEI++K I T+ D Y+++RLSI Sbjct: 300 SSVSAPTTVEQNLPEEDVSADNGERSSEENERREETVNYEISSKRIETSQDGYRVDRLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V+K RL + LG Q ++ L EI +V+++ GI RGD + + +DF++ Sbjct: 360 AVLVDKSRLAQSLGGEPTQAQMQEQLTEIEALVASSAGIEKERGDLVKVAVVDFVDGGRA 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 +S + L R +INAL L ++LV + GL AK + Sbjct: 420 MEPIPPISITEYLMRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQIAKPQVEMAELG 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 ++P V + ++ +NS +K + +L ++E NE Sbjct: 480 MTPETAEGTVEAVDGEQ--------TFLMPPDHSDMLQDLNSRRNKSALRKLESLLEFNE 531 Query: 540 ERFAKILRKWARS 552 E+ A ILR+W Sbjct: 532 EQSAAILRQWLYE 544 >gi|238755308|ref|ZP_04616651.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473] gi|238706444|gb|EEP98818.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473] Length = 574 Score = 363 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 134/585 (22%), Positives = 246/585 (42%), Gaps = 59/585 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F L + L + + +A + SP Y LY L D I Sbjct: 12 NRENGFTGLLNRLRANPKIPLLVAAAAAVSIVVALMLWAKSPDYRVLYSNLSDRDGGAIV 71 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R ++NG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 72 TQLTQLNIPYRFAENGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182 F ++I RALEGE++RTI+++ ++ RVH+ MP F + P+ASV + Sbjct: 130 FSEQINYQRALEGELSRTIETLGPVLNVRVHLAMPKPSLFVREQKSPSASVTLTLQPGRA 189 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D TG+LLT ++ + L ++ Sbjct: 190 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVEVRF 249 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ T++ + Y P+ + E+ S+ +SE Sbjct: 250 QRRIESILAPMVGNGNVHAQVTAQVDFATREQTDEEYKPNQRPEQGAVRSQQLSQSEQVG 309 Query: 302 P---ESAVTVEQNMPHVSDRKV------------------------------PLPRSLEN 328 N P + ++ Sbjct: 310 GTPIGGVPGALSNQPSATPAAPIETPAAPGATGAAANTATATPATRNTSAGTAGKNAVPG 369 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + +++E +NYE++ T ++RLS+AVVVN + + G+ LA+I Sbjct: 370 SSRRDETTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYLGIDKKSGKPI--ALSKDQLAQI 427 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G +++RGDT+ + + F E + NS F V+NA +L+ Sbjct: 428 EALTREAMGFSTQRGDTLNVVNTPFTEAEETNSALP----FWKSQSFFDQVLNAGRYLLI 483 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L+ L +R L + P+ +A T + + D Sbjct: 484 LLVAWILWRKLVRPLMAKK------------MEVNPVIAAAKTVAQTAEAAESAKQSNDE 531 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 532 LAQRKKSQQRVSAEVQAQ---RIRELADKDPRVVALVIRQWMSND 573 >gi|296103558|ref|YP_003613704.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058017|gb|ADF62755.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 559 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 121/543 (22%), Positives = 221/543 (40%), Gaps = 51/543 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Sbjct: 42 MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 101 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ M Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 159 Query: 159 PDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VT++D +G L Sbjct: 160 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 219 Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT + R++ L ++ ++ I L +G N + V A+++ ++ E Sbjct: 220 LTQSNTAGRDLNDAQLKYAADVEARLQRRIEAILGPVVGNSNVHAQVTAQIDFSNKEQTE 279 Query: 276 IVYDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+ +++ S+ + ++ + P N P ++ Sbjct: 280 EQYRPNGDPAQAVMRSRQVNENEQVGGAYPGGVPGALSNQPAPANAAPISTPPANQQNGQ 339 Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + T+ + E +NYE++ T + ++RLS+AVVVN L Sbjct: 340 QNQQTTTSTASNAGPRTNSRNETTNYEVDRTIRHTKLNVGDIQRLSVAVVVNYKTLPNGK 399 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + +I + A G + +RGD++ + + F Sbjct: 400 ----PLPLTAEQMKQIEDLTREAMGYSEKRGDSLNVVNSPFNPVDETGGELP----FWQQ 451 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 +++A +L+ ++ L +R + Sbjct: 452 QAFIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRRAEAEKAA------------REQINA 499 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++D R R+ + V Q R+ M + + A ++R+W + Sbjct: 500 RQEVEEAVEVRLSKDEQMQQRRANQRMGAEVMSQ---RIREMSDNDPRVVALVIRQWMGN 556 Query: 553 EIE 555 E E Sbjct: 557 EHE 559 >gi|73538922|ref|YP_299289.1| flagellar MS-ring protein [Ralstonia eutropha JMP134] gi|72122259|gb|AAZ64445.1| Flagellar FliF M-ring protein [Ralstonia eutropha JMP134] Length = 568 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 113/582 (19%), Positives = 217/582 (37%), Gaps = 66/582 (11%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + L L L + +P Y LY L D + +L + N Sbjct: 13 EVLDRLKANPKLPLMLGGAALAAAIAVGVLWSRAPDYKVLYSNLSERDGGAVLQSLQQMN 72 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++ ++ G ++ VP+ V + R+ LA+QGLP S +G EL D FG++ F +++ Sbjct: 73 VPYKFAEGGGAVMVPAEKVHETRLRLASQGLPKSG-TTGLELMDN-QKFGISQFAEQVNY 130 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAE 189 R LEGE+AR+I+SI+ + +ARVH+ +P F + +PTAS++++ Sbjct: 131 QRGLEGELARSIESIAAVQSARVHLAIPKPTLFVRERQKPTASIVLQLYPGRAIDEGQVA 190 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 AI HLV+++VP L ++++D G LL+ + ER + L VQA++ I L Sbjct: 191 AISHLVSSSVPELTPKAISIVDQHGNLLSNSGNERMLDATQLKYVQALEQNYLKRIESIL 250 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAV 306 +G DN R+ V A+++ + + Y P+ + S+ S P Sbjct: 251 TPIVGKDNVRAQVTADVDFSIVEHTDESYKPNQDPTHAAIRSQQTSESNQQGATPPGGVP 310 Query: 307 TVEQNMPHVSDRKV----------------------------------PLPRSLENTDKK 332 N P + +++++ Sbjct: 311 GALSNQPPAPATAPITTAQTPRAGQAPGQAGAPAQPQGAQAGQAQAATSTASTGPSSNRR 370 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 + NYE++ + RLS+AVVVN + + G+ Q + LA+I + Sbjct: 371 DSTVNYELDRTVRHVQQAPGGVRRLSVAVVVNYRQQADAKGKMVAQPLPPALLAQIENLT 430 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 G ++ RGD+I + + F + + + + T L+ + L Sbjct: 431 KETMGFSADRGDSINVVNSPFT-VDREVTPELPLWKQPEMIDLAKTGAGYLLLALLALFA 489 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 F + R + ++ P ++ Sbjct: 490 WFKIARPILRRYTTPPLPAPTPAAETTAELLPPEEPTNPEVLRL---------------- 533 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + + + A +++ W +++ Sbjct: 534 --------AAKYESDLALVRDAAQRDPRLVASVIKNWIGNDL 567 >gi|87119487|ref|ZP_01075384.1| flagellar M-ring protein [Marinomonas sp. MED121] gi|86164963|gb|EAQ66231.1| flagellar M-ring protein [Marinomonas sp. MED121] Length = 551 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 112/555 (20%), Positives = 222/555 (40%), Gaps = 31/555 (5%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + L R L L + I + +AA + + P Y + + + ++I LS Sbjct: 16 ELLTGFNKLTVIRQLALMVGLAASIAIGLAAILWTDGPEYKPVLSSITDYNADQIVEVLS 75 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 NI F++ +N ++ V + +AR+ LA G+ + + G E+ D+ G + F++ Sbjct: 76 INNIPFKLDENTGALLVEADQYHQARLKLAGSGIVND-TIVGMEIMDQEQGLGTSQFVEG 134 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186 R LEGE++RTI S+ I +ARVH+ +P F + +P+ASV + Sbjct: 135 TRYRRGLEGELSRTISSLQSIKSARVHLAIPKESVFVRDTRKPSASVFLEMYPGRRLDRS 194 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244 +AI +LV++++ L VTV+D G LL+ E + GK + ++ + Sbjct: 195 QVDAIVNLVSSSISQLSAKSVTVVDQRGTLLSEKETSSELSVAGKQFDYTRKVEDVLLSR 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 +N L +G D F++ V +++ + + + Y+PD RS + +++ T Sbjct: 255 VNSILGPVVGADRFKAEVSTDVDFTSVEQTDEQYNPDLLALRSEQTLNESRNGTT--NSG 312 Query: 305 AVTVEQNMPHVS------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 N P + ++E N+E++ T + RLS Sbjct: 313 IPGSLTNQPPGAITAPEVANSAGAASGTNGESRQETTRNFELDRSISYTRRQQGTIRRLS 372 Query: 359 IAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +AVVV+ + D L+ + +V A G +S RGD++++ + F + Sbjct: 373 VAVVVDDLVSIDPETSELVRTPWSDDELSRLTLLVRDAVGYDSARGDSVSVINSPFAVPE 432 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + F ++I + L++ + + + + + Sbjct: 433 PLPTPEELPFYQ---QEWFLSLIQPTLVGFFVLILLMVVVRPILKTLG------EQNKIA 483 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 A T + +D ++L S+ + S R + +I Sbjct: 484 VAEDAEASIFADETDEISDDQVSLVSAEDIMVPGSPEKIER--------QLNAIRGLIAE 535 Query: 538 NEERFAKILRKWARS 552 ER A+++++W Sbjct: 536 EPERVAQVVKQWVMD 550 >gi|237731986|ref|ZP_04562467.1| flagellar MS-ring protein [Citrobacter sp. 30_2] gi|226907525|gb|EEH93443.1| flagellar MS-ring protein [Citrobacter sp. 30_2] Length = 557 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 123/569 (21%), Positives = 228/569 (40%), Gaps = 49/569 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGAAAVAIIVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NVPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 RALEGE+ARTI+++ + ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKRARVHLAMPKPSLFVREQKAPSASVTVNLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D G LLT + + L ++ ++ I Sbjct: 192 SAVTHLVSSAVAGLPPGNVTLVDQAGHLLTQSNTSSRDLNDAQLKYASDVEGRVQRRIES 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS---ETSQPES 304 L+ +G N + V A+L+ ++ E Y P+ +++ S+ S + P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGG 311 Query: 305 AVTVEQNMPHVSDRKV------------------PLPRSLENTDKKEEQSNYEINTKSIA 346 N P ++ + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPANTAPIANPPANQQNAQTTQTANNSNNAGPRSTQRNETSNYEVDRTIRH 371 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T + ++RLS+AVVVN L + + +I + A G + +RGDT+ Sbjct: 372 TKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLTADQMKQIEDLTREAMGFSDKRGDTL 427 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + F ++ A +L+ L+ L A+R Sbjct: 428 NVVNSPFTATDDSMGELP----FWKQPFFIDQLMTAGRWLLVLLVAWILWRKAVRPQLVR 483 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + V ++ + + ++D + R R+ + V Q Sbjct: 484 RSEEAKAVQEQTRIR------------QETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 532 ---RIREMSDNDPRVVALVIRQWMSNDHE 557 >gi|162136034|ref|YP_530830.2| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18] Length = 539 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 130/551 (23%), Positives = 230/551 (41%), Gaps = 19/551 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V I F V +P L+ L V D + I Sbjct: 1 MQGLVSFLKGLGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGSTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMN 244 AIRH+VA+AV L V+++D G+LL + + + Sbjct: 180 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRMRNQ 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + +++ +G R + A+ + + +DP+ +V RS + +++ ++ + Sbjct: 240 VEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAANDGQ 299 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 N + + + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 300 V--TVNNELPGAQAGAGAAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVLVD 357 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G Q + L I +V +A G + +RGD + + ++ F E Sbjct: 358 GIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPVAE 417 Query: 425 Q---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + VI V ++ L+V F+ + L R + G L+ Sbjct: 418 PGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVRRILAAEPGAAGANGVPALT 477 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 ++ I D + +++ V QS R+ + + N Sbjct: 478 DASGTA-----------IGPDGLPLVAPGPNMIDIAQVQGQVHAQSVHRVGELADRNPNE 526 Query: 542 FAKILRKWARS 552 A I+R+W + Sbjct: 527 TAAIVRQWLQE 537 >gi|167561148|ref|ZP_02354064.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 490 Score = 363 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 115/443 (25%), Positives = 194/443 (43%), Gaps = 15/443 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G Sbjct: 50 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASIG 109 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + +ARVH+ +P Sbjct: 110 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 167 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 168 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 227 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 228 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 287 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ +++ S+ + S N P + P + Sbjct: 288 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 347 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN + GR Q LA+I Sbjct: 348 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 407 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 408 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 467 Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471 L ALRR Sbjct: 468 AALYFMFVRPALRRAFPPPAEPA 490 >gi|114319870|ref|YP_741553.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1] gi|114226264|gb|ABI56063.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1] Length = 580 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 123/557 (22%), Positives = 223/557 (40%), Gaps = 20/557 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q L LA V+L + + + P Y L+ +L+ D + Sbjct: 38 MDQLEGLFGGRQNVMRLGLAVVLLFTVAAGVLLYLWAQEPSYRTLFSELDDQDAAAVIEQ 97 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E I +R+ + ++ VPS V AR+ LAA+GLP + G+E+ + ++FG + FM Sbjct: 98 LEEQGIPYRLDERTGAVRVPSDQVHPARLQLAAEGLPR-GTGFGFEMLQEDSAFGTSEFM 156 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184 + RALE E+AR+I ++ + AARVH+ +P F + +P ASV++ Sbjct: 157 EGARFDRALETELARSIGTLRQVDAARVHLALPRESVFVRDRRQPRASVVVNLAQGRRLN 216 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEM 243 + +AI H+VA++VP+L +V+V+D G+LLT +E ++ Sbjct: 217 DEQVDAIVHMVASSVPDLAHENVSVVDERGRLLTRDEGRGLASTAGQFQYKTQVEETYVR 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I LA +G + R+ V A L+ QQ E +YDPDS+V RS L + Sbjct: 277 RIEDLLAPLVGRNRVRAQVNASLDFSEQQRTEELYDPDSRVIRSEALQGRRTQQGADAAM 336 Query: 304 SAVTVEQNMPHVSDRKVPL---PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P + + E NYEI+ ++R+S+A Sbjct: 337 GVPGALTNQPPGAGQLDGEEAPENPPPVDISSSETRNYEISRTLRQVRDPIGSIQRVSVA 396 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVV++ T+ G + + D + IN +V A G ++ RGD++ + + FLE + Sbjct: 397 VVVDERITTDEEGNTVREPLSDEEMDRINALVQEAVGFDAARGDSVNVVNAAFLEEEPVE 456 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + +I + + + + + + + Sbjct: 457 AMPPVPLLE---REWVRELIRFAIAALAFIALLLFVVRPMIKGMQRQ----------RDQ 503 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + +S L + ++ + L + + + ++ E Sbjct: 504 ALRAPASEEQARLAQQGGGGGAAQLAGPDANEQALLAGVQHKPYEAKLEAAKKLVNDEPE 563 Query: 541 RFAKILRKWARSEIEDR 557 A +++ W + R Sbjct: 564 LAANVIKSWLAEDDGKR 580 >gi|300693364|ref|YP_003749337.1| flif: flagellar biosynthesis protein, m-ring protein, belongs to the flif family [Ralstonia solanacearum PSI07] gi|299075401|emb|CBJ34696.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Ralstonia solanacearum PSI07] Length = 611 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 127/554 (22%), Positives = 232/554 (41%), Gaps = 47/554 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +P+Y LY + SD I AL + N+ +R +D GS+I VP + V +AR+ LAA Sbjct: 65 MLWSRTPNYGVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 125 QGLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182 Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + A+P+ASV+++ +AI HLV+++VPNL + +VTV+D +G+LL Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242 Query: 218 TA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 ++ + + L+ V+ I+ I L LG DN R+ V A++++D + Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGEDNVRAQVTADVDLDNTEQMA 302 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL---------- 322 Y P+ + S S ++ N P + R +P Sbjct: 303 ETYRPNQDPSNGVVRSTHTSESTQNKAGAQGGVPGALSNQPPSAPRMLPTAPAPASQQAA 362 Query: 323 ----------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + + ++ NYE++ T + RLS+A Sbjct: 363 AGQNGQNGQNGQQQAAAATGQTAANGVESSARDTTINYEVDKTVRRTRAAVGTVRRLSVA 422 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN + + D+ + ++N +V A G +++RGD++ + + F Sbjct: 423 VVVNYRADGKA-----WKPLSDAEMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPVA 477 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + + + +G L++ F + L R N D Sbjct: 478 KDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEHAAATFVGREG 537 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN-SYVSKQSDLRLLHMIEINE 539 P + S+ + ++ ++ +Q + + + N Sbjct: 538 EDPNAPIITGAAAPAGPELEGPSAASAQGDEVQIEVPQLKMNHDFEQKLETMRRIAQQNP 597 Query: 540 ERFAKILRKWARSE 553 A ++++W SE Sbjct: 598 RAVAAVVKQWVSSE 611 >gi|283785708|ref|YP_003365573.1| flagellar M-ring protein [Citrobacter rodentium ICC168] gi|282949162|emb|CBG88770.1| flagellar M-ring protein [Citrobacter rodentium ICC168] Length = 560 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 123/572 (21%), Positives = 223/572 (38%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + SP Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPKIPLIIAGSAAVAIIVAMVLWAKSPDYRTLFSNLSDQDGGAIVTQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 RALEGE+ARTI+++ + ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVRRARVHLAMPKPSLFVREQKSPSASVTINLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G+LLT + + L +++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGRLLTQSNTSSRDLNDAQLKYASDVENRIQRRIES 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAALRSRQVNESEQIGSGLPGG 311 Query: 305 AVTVEQNMPHVSDRKV---------------------PLPRSLENTDKKEEQSNYEINTK 343 N P ++ ++ E SNYE++ Sbjct: 312 VPGALSNQPAPANAAPITTPPANQQNAQNGQNAQQTSTNNAVGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + ++RLS+AVVVN ++ + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIQRLSVAVVVNYKTPSDGK----PLPLTADQMKQIENLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F N+G V + L+ L+ L+ + + Sbjct: 428 DTLNVVNSPFSATD-ENAGEVPFWKQQFFIEQLFSAGRWLLVLLVGWLLWRKAVRPQLQR 486 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + E + + ++ A ++ S Sbjct: 487 RAEEAKAAREREQLRQETKEAVEVRLSKDEQTQQQRANQRLGAEVLSQ------------ 534 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 535 ------RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|146312175|ref|YP_001177249.1| flagellar MS-ring protein [Enterobacter sp. 638] gi|145319051|gb|ABP61198.1| flagellar M-ring protein FliF [Enterobacter sp. 638] Length = 565 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 125/549 (22%), Positives = 219/549 (39%), Gaps = 57/549 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY + D I L++ NI +R +DNG +I VP+ V + R+ LA Sbjct: 42 MVLWAKSPDYRTLYSNVSDQDGGAIVTQLTQLNIPYRFADNGGAIEVPADKVHELRLRLA 101 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F ++I RALEGE+ARTI+++ + ARVH+ M Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTIETLGPVKTARVHLAM 159 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VTV+D +G L Sbjct: 160 PKPSLFVREQKNPSASVTVTLEPGRALDEGQISAVTHLVSSAVAGLPTGNVTVVDQSGHL 219 Query: 217 LTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT + + L ++ I+ I L +G N + V A++N D ++ E Sbjct: 220 LTQSNTSSRDLNDAQLKYANDVEGRIQRRIEAILGPIVGSSNIHAQVTAQINFDNKEQTE 279 Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+ +++ S+ + P N P ++ Sbjct: 280 EQYSPNGDAAQAVMRSRQLNTTEQIGGQNPGGVPGALSNQPAPANSAPISTPPANQQNGQ 339 Query: 321 --------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 S + E +NYE++ T + ++RLS+AVVVN Sbjct: 340 QNGQQNNQQQQTTSTAASSGPRNSSRNETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYK 399 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 L + + +I + A G +RGD++ + + F Sbjct: 400 TLPDGK----PLPLTTDQMKQIEDLTREAMGFTEKRGDSLNVVNSPFTATDETGGELP-- 453 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 +++A +L+ ++ L A+R + Sbjct: 454 --FWQQQSFIEQMLSAGRWLLVLIVAWLLWRKAIRPQLTRRAEEAKAA------------ 499 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + + + ++D + R + R+ + V Q R+ M + + A ++ Sbjct: 500 QEMMSARQDIEEAVEVRLSKDEQTQQRRVNQRLGAEVMSQ---RIREMSDNDPRVVALVI 556 Query: 547 RKWARSEIE 555 R+W ++ E Sbjct: 557 RQWMSNDHE 565 >gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille] gi|151280397|gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp. Marseille] Length = 585 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 121/588 (20%), Positives = 217/588 (36%), Gaps = 66/588 (11%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + F R ++L I + +A + P Y L+ D I Sbjct: 24 NMQNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEYKVLFSNFSDRDGGAIMS 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 +L +N+ ++ ++ G +I VP+ V + R+ LAA+GLP G+EL + G++ F Sbjct: 84 SLQASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGG-VGFELM-ENQKLGVSQF 141 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183 ++++ RALEGE+AR+IQS+ + AARVH+ MP F + +PTASV++ Sbjct: 142 LEQVNFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRAL 201 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHE 240 + AI HLVA++VP L +VT++D +G LL+ + L VQ +Q Sbjct: 202 DQQQVSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNTLDPSQLKYVQELQQS 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I I + +G N R+ A+++ T + +Y P+ + S S + Sbjct: 262 ITKRIESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGN 321 Query: 301 QPE--SAVTVEQNMPHVSDRKVPLPRS--------------------------------- 325 N P + Sbjct: 322 GTGASGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAA 381 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +K+ +N+E++ L+RLS+AVVVN R+ G+ ++ Sbjct: 382 NATPTQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEK 441 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I +V A G N RGDT+ + + F + + + L Sbjct: 442 NQITDLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERPEIIEMAIQAAKYLAI 501 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 + L+ R+L K + + + A+ + D + N Sbjct: 502 GIVLFLLY-------RKLLKPMLNKLNPPPPEPLALEDESAEALEKMHLEEDGKPMGIQN 554 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +Q+ + + + A I++ W ++ Sbjct: 555 T-----------------YQQNLEAAKELARKDPKVVANIVKSWVGND 585 >gi|254502238|ref|ZP_05114389.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] gi|222438309|gb|EEE44988.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11] Length = 538 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 134/552 (24%), Positives = 246/552 (44%), Gaps = 17/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + +LG RI + +V + + +F F V +P LY +L + D I Sbjct: 1 MNGLIEFIKTLGPARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAIVSQ 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + F+++ G+SI VP V + R+ LAA+GLP+ S GYE+FD+ ++ G TSF+ Sbjct: 61 LESQGVQFKLAREGASIMVPQEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGATSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RA+EGE++RTI S+ I +ARVH+V+P+ F++ P+AS+++ Sbjct: 120 QNINHLRAMEGELSRTISSLDRIRSARVHLVIPERQLFQRDRRPPSASIVLNVRGGLGPG 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEM 243 A++HLVA AV LD V+++D +G+LL + ++ E + + AI+ + Sbjct: 180 EIRAVQHLVATAVDGLDPDKVSIVDESGRLLASGASSDDEGMVSARLQERSTAIESRLRN 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + + L + +G R V A+++ + +DP+ +V RS + ++A S Sbjct: 240 QVEEILNSVVGPGRARVRVNADIDFNRLTETTETFDPEGQVVRSTQSKEEATSSTRQD-- 297 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P+ + + + EE NYEI+ + + ++ RLS+AV+V Sbjct: 298 GQVTVGNELPNADANQNNDAEEQDTSSLTEEIVNYEISRSTRTEVVEAGRITRLSVAVLV 357 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + T+ G S + L I +V +A G + RGD + + ++ F + Sbjct: 358 DGTYQTDEDGNSIYTPRAQEALDRIAVLVRSAVGFDEARGDVVEVINLQFALPPELDIA- 416 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 D V + +L+ + L R + ++ P Sbjct: 417 EPDGLFDFTRSDIMRFAELGVLFLIAILLLLFVVRPLLRRIVTPEERQ----------PQ 466 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + L+ + + + +D F Q++ + S ++ MI + Sbjct: 467 ELVIGPDGTLVADSEVPKEEEEEDEFVIEWLEQAKQEGALQASSIAKVGEMISDHPTEAV 526 Query: 544 KILRKWARSEIE 555 I+R W + Sbjct: 527 NIVRGWLDEQAA 538 >gi|166712032|ref|ZP_02243239.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 574 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 112/568 (19%), Positives = 229/568 (40%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312 Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + + LV V L + F + R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQY----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K + P ++ +++ L +D S + + I + + Sbjct: 489 VTPIKEKQRKGGNDDTPQN---ADVRMVDDEDSLLPQMGEDTASIGQERKPAIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +R+ ++ + +R A++++ W SE Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|62180544|ref|YP_216961.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128177|gb|AAX65880.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715020|gb|EFZ06591.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 560 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L +G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPLGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560 >gi|161613462|ref|YP_001587427.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362826|gb|ABX66594.1| hypothetical protein SPAB_01179 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 531 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 123/542 (22%), Positives = 219/542 (40%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313 Y P+ ++ S+ SE P N P Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + + ++ E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R + ++ + Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVR------------ 472 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++D R R+ + V Q R+ M + + A ++R+W ++ Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|83309602|ref|YP_419866.1| flagellar MS-ring protein [Magnetospirillum magneticum AMB-1] gi|82944443|dbj|BAE49307.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magneticum AMB-1] Length = 574 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 145/555 (26%), Positives = 256/555 (46%), Gaps = 7/555 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + F + LG R+ +A V + + F+ V +P + LY L++ D +I Sbjct: 20 DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 79 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I + + +G+ + VP R+ +A Q LP+ +GYELFDK ++ G TS Sbjct: 80 EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 139 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182 F Q IT VRALEGE+++TI+SI + AARVH+V+P +F + P+ASV+I+ Sbjct: 140 FQQNITMVRALEGELSKTIRSIDRVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGAQR 199 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240 AI+HL+AAAVP + ++++D G LL + + + + Sbjct: 200 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEEMKVKTEAK 259 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I L LG R+ V +++M E +DP++KV RS + ++S+ + Sbjct: 260 LVKTIEDLLERSLGPGRVRAEVTVDMDMSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 319 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 +P + VTV+QN+P + R+ +K +E NYEI+ K+ +T + ++ ++S A Sbjct: 320 EP-TPVTVQQNLPDPNASSSGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 378 Query: 361 VVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V+V+ R G+ + + L++I +V +A G R D + + SM F + + Sbjct: 379 VIVDGVREQSADGKQTSYRERTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 438 Query: 420 NSGTVQVSFMDILSRHF-ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 F+ + R F + + L V +L L L L + G+ Sbjct: 439 LQAEEPGEFIFGMRRDFVEKIASNLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGRR 498 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 +L+ + TG A +++ + ++ V S ++ ++E + Sbjct: 499 LLTTDGGAMPQLTGPGAAAMPAPLGGEEEVIADELIDIDKVEGRVKASSIRKIGEIVEKH 558 Query: 539 EERFAKILRKWARSE 553 E I+R W E Sbjct: 559 PEEALSIIRNWLYQE 573 >gi|161511085|ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110] Length = 537 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 133/549 (24%), Positives = 227/549 (41%), Gaps = 18/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + +G R + +V + F V +P L+ L V D + I Sbjct: 1 MQGLADFLKGIGAARFGAMIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + + G+ I VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIQFELRNEGTIIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I AARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AIRHLVA+AV L V+++D G+LL + + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVE 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 +++ +G R + A+ + + +DP+ +V RS + ++ S T+ V Sbjct: 240 DIVSSVVGSGRARVQLSADFDFNKITQTSDKFDPEGRVLRSTQTREE--SSMTADNNGQV 297 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV +P + + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 298 TVNNELPGNQQN--NGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGI 355 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G A Q + L I +V +A G + +RGD + + ++ F + Sbjct: 356 YSKNDKGELAYQDRTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIAEPS 415 Query: 427 SFMDILS---RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 F+ +L + V ++ L+V F+ + L + D + G Sbjct: 416 GFLGMLQFTKDDVMYFVELGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSGPAA 475 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 +A G + S + I V QS R+ + E N Sbjct: 476 SDEAAPAAGQAL----------LPGGAASAIDVATIQGQVHAQSVHRVGELAERNPNETV 525 Query: 544 KILRKWARS 552 I+R+W Sbjct: 526 AIIRQWLTE 534 >gi|254470345|ref|ZP_05083749.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] gi|211960656|gb|EEA95852.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] Length = 528 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 139/530 (26%), Positives = 238/530 (44%), Gaps = 9/530 (1%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87 + + I LF +P L+ L + D I + + + + NG S+ VP Sbjct: 1 MAALLIGLFSFIIVRATAPQMVPLFTDLTLEDAAAIVSQVESQGVSYELGVNGRSVLVPQ 60 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 V + R+ LA GLP S GYE+FDK ++ G TSF+Q + R RALEGE++RTI+SI Sbjct: 61 ENVHRLRMTLAEAGLP-SGGGVGYEIFDKTDTLGATSFVQNLNRTRALEGELSRTIRSIG 119 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 I +ARVH+V+P+ F++ PTAS+ I+ AI+HLVA AV L+ V Sbjct: 120 RIASARVHLVIPEKQLFQRDREPPTASIAIKVQGSLTNGQIRAIQHLVATAVEGLEPSYV 179 Query: 208 TVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 +++D G LL T ++ ++ + + + L +G R V A Sbjct: 180 SIVDERGTLLASGTGDKEGLAGGSSLDERRLTMESRLRQQVEEILNNVVGTGRARVRVAA 239 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 E+N + + + ++DPD +V RS + ++ S + +V N +D Sbjct: 240 EINYNRKTETQELFDPDGQVLRSSQSKEENASSTNGEDTVSVG---NQLPNADAAGSSAG 296 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 S ++++ EE NYEI+ ++ ++ LERLS+AV+V+ T G Q + Sbjct: 297 SKDSSNVSEEILNYEISKSTVTEIYEAGGLERLSVAVLVDGTYTTSEDGTQTYQPRSREE 356 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 L +I +V A G + RGDT+ + +M F+E L + + D V Sbjct: 357 LEQIATLVRTAVGFSKHRGDTVEVVNMRFVEAPLSDFADGEGGLFDFTRADIMKFAELGV 416 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI--ALD 502 V T+L+ + L + D + + P + VT + I ++ Sbjct: 417 LFVITVLLLIFAVSPLMKRILAKDDEPEAAIEGGGVQMLPDGTLVTESPAQVEGIVGEME 476 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + +I + +++ + + + S ++ MIE + I+R W Sbjct: 477 AVPTEIPTAEWIEDAKMQAALHQSSIKQISEMIEDSPSEAVNIVRGWLNE 526 >gi|39648187|emb|CAE26707.1| putative flagellar M-ring protein [Rhodopseudomonas palustris CGA009] Length = 522 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 134/535 (25%), Positives = 228/535 (42%), Gaps = 21/535 (3%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 + + +V + + F V+ P LY L V D + I L I F + ++G+ Sbjct: 1 MAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKELERQGIPFEMRNDGAI 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + VP V + R+ LA GYE+FDK ++ G TSF+Q I +RALEGE++RT Sbjct: 61 LLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELSRT 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 I++I + AARVH+V+P+ F + P+AS+++R + AIRHLVA+AV L Sbjct: 120 IRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQQVRAIRHLVASAVNGL 179 Query: 203 DMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 V+++D G+LL S A + + I +++ +G R Sbjct: 180 KPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQIEGIVSSVVGSGRARV 239 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V A+ + + +DP+ +V RS + ++ + TS + VTV +P + + Sbjct: 240 QVSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SAATSAADGQVTVNNELPGAN--QG 295 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 + + + K EE +NYEI+ + + ++ RLS+AV+V+ G + Sbjct: 296 QGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVDGAYTKNDKGELVYAER 355 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV---SFMDILSRHFA 437 L I +V +A G + +RGD I + ++ F E Sbjct: 356 PKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPEPAGLMGMFQFTKDDIM 415 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 +I V + L+V F+ + L + + GG L+ + Sbjct: 416 NMIQLGVMFLLGLVVLFMVIRPLVKRILAAEPAPEAAGGLPALADGTVP----------- 464 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 I D S +++ V QS R+ + E N A I+R+W Sbjct: 465 QIGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNETAAIIRQWLAE 519 >gi|321224614|gb|EFX49677.1| Flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 531 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 123/542 (22%), Positives = 220/542 (40%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313 Y P+ ++ S+ SE P N P Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + + + ++ E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R + ++ + Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVR------------ 472 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++D R R+ + V Q R+ M + + A ++R+W ++ Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|326622865|gb|EGE29210.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 531 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 123/542 (22%), Positives = 219/542 (40%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313 Y P+ ++ S+ SE P N P Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + + ++ E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+R + ++ + Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVR------------ 472 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++D R R+ + V Q R+ M + + A ++R+W ++ Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|89899361|ref|YP_521832.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118] gi|89344098|gb|ABD68301.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118] Length = 588 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 114/566 (20%), Positives = 213/566 (37%), Gaps = 43/566 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + + L + + L + ++V + + + + LY L D I L+ Sbjct: 41 LSQRFSGLDQGQRLRMGLGLVVFVAIGIIGLMMGRQAEWRVLYANLADKDGGAIVAQLTT 100 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ +D G +I VP+ V R+ LA+QGLP + +G+E D FG+T F + + Sbjct: 101 MNVPYKYADGGGAILVPADKVYDTRLRLASQGLPK-GAVAGFETMDAN-RFGMTQFQERL 158 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 159 AFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLVSLNAGRTLDRAQ 218 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEM 243 I HLV+++VP ++ V+VLD +GKLL+ + G + L VQ ++ Sbjct: 219 LAGIVHLVSSSVPEMNASAVSVLDDSGKLLSTPPEGADGAGGGDAQQLQYVQQLEQLYSR 278 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--- 300 I L +G N R+ V AEL+ + + P+ + S S+ S Sbjct: 279 RILDILEPVVGRGNARAQVTAELDFSQTESTSESHKPNQTPDSSAIRSQQVSESSNGSGI 338 Query: 301 --QPESAVTVEQNMPHVSDRKVPLPRSLENTD-----------KKEEQSNYEINTKSIAT 347 P N P T ++E NYE++ Sbjct: 339 SGPPSGVPGATSNKPPGPSSAPINGAPQTLTAAGAGASAGAGGRRESIINYEVDKTVKVV 398 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++R+S AVVVN +T+ G++ + ++ +V G N RGD++ Sbjct: 399 RGGTGIVKRISAAVVVNHQSVTDAKGKTTTTPLSAQQIEQMTALVRETVGFNKERGDSVN 458 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + + ++ L L+ LV + + Sbjct: 459 LMNAPFT-TERVVPVDLPFWKQSEIQDLARSLAWPLGTLLFGALVLLGVIRPALKTL--- 514 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 ++ + I ++ + + + + Sbjct: 515 ---------------AQSQPRISASSHQLNAIESEAPERAQLAAPARSSELAGPTSGELA 559 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + N A I++ W E Sbjct: 560 LDDARKLTRDNPAAVANIVKTWINGE 585 >gi|308187290|ref|YP_003931421.1| Flagellar M-ring protein [Pantoea vagans C9-1] gi|308057800|gb|ADO09972.1| Flagellar M-ring protein [Pantoea vagans C9-1] Length = 575 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 136/586 (23%), Positives = 237/586 (40%), Gaps = 57/586 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F L + L + + +A + P Y LY L D I Sbjct: 11 QEKKGFGDLLARLRANPRIPLIVAAAAVVAIVIAMVLWAKQPSYSVLYNNLTDEDGGAIV 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R ++NG ++ VP + V + R+ LA QGLP S G+EL DK FG++ Sbjct: 71 TQLTQMNIPYRFAENGGALIVPEANVHELRLRLAQQGLPKGGS-VGFELLDKE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE+ARTI+S+ + +ARVH+ MP F + P+ASV + Sbjct: 129 FSEQVNYQRALEGELARTIESLGPVKSARVHLAMPKPTLFVREQKAPSASVTLTLQPGRA 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEI 241 +AI H+V+++V L G+VTV+D TG+LLT ++ R++ L ++ Sbjct: 189 LDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRLLTRSDNAGRDLNDAQLKYSSEVEARY 248 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I L LG N + V A++N DT + + Y P++ + S+ S+ S Sbjct: 249 QQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEKYQPNANPSNTAIRSRQTSTSDQSG 308 Query: 302 ---PESAVTVEQNMPHVSDRKVPLPR------------------------------SLEN 328 P N P ++ S Sbjct: 309 SPYPGGVPGALSNQPAPANTAPVTTPNNNAANGQNANGQNNAANNASQTTSTAAASSAPT 368 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++++ NYE++ T + ++RLS+AVVVN + + L +I Sbjct: 369 NSRRDDTVNYELDRSIRHTKVNVGDVQRLSVAVVVN----FRADDKGKAVALNEQQLKQI 424 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G + RGD++ + + F + + F ++NA +L+ Sbjct: 425 EDLTREAMGYSQTRGDSVNVVNSQFNTTEAVTADLP----FWQQQSFFDQLMNAGKWLLI 480 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L+ L +R + + +A P + ++D Sbjct: 481 ALVAFILYRKLVRPHL--------VRKQAAEKAAAEAVAARAAAQQPEEEAFNVQLSKDE 532 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R +R+++ V Q R+ M E + A ++R+W E+ Sbjct: 533 LDQERKSNNRMSAEVMSQ---RIRDMSENDPRVVALVIREWMSKEL 575 >gi|213053157|ref|ZP_03346035.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|289829461|ref|ZP_06547073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 531 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 122/542 (22%), Positives = 218/542 (40%), Gaps = 52/542 (9%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313 Y P+ ++ S+ SE P N P Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + + ++ E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + +I + A G + +RGDT+ + + F Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 ++ A +L+ ++ L A+ + ++ + Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------ 472 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++D R R+ + V Q R+ M + + A ++R+W ++ Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529 Query: 554 IE 555 E Sbjct: 530 HE 531 >gi|58582224|ref|YP_201240.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624117|ref|YP_451489.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576784|ref|YP_001913713.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576976|ref|YP_001913905.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426818|gb|AAW75855.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368057|dbj|BAE69215.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521236|gb|ACD59181.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521428|gb|ACD59373.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae PXO99A] Length = 574 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 112/568 (19%), Positives = 230/568 (40%), Gaps = 28/568 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F +SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVSSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++PN+ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPNITPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312 Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + + LV + L + F + R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGALVVLALLFGVVRPTLRQLTG 488 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K + P ++ +++ L +D S + + I + + Sbjct: 489 VTPIKEKQRKGGNDGTPQS---ADVRMVDDEDSLLPHMGEDTASIGQERKPAIALPDAYE 545 Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553 +R+ ++ + +R A++++ W SE Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573 >gi|56384261|gb|AAV85779.1| FliF [Azospirillum brasilense] Length = 521 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 150/519 (28%), Positives = 255/519 (49%), Gaps = 10/519 (1%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 +++P + LY +L+ ++ I+ L EA + F + G+ I V + VG R+ +AA GL Sbjct: 4 LSTPEMELLYAELQPTEAAAIAKKLEEAKVPFTVDKTGTKIMVAAEQVGPTRMRMAAAGL 63 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S + GYELFDK FG TSFMQ I +RALEGE+ART+Q+++G+ +ARVH+V+P Sbjct: 64 P-SGGSIGYELFDKGEGFGATSFMQNINHLRALEGEMARTVQTLNGVQSARVHLVLPKRE 122 Query: 163 SFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--- 217 F + TAS+ +R ++ +AI+HL+AA+VPNLD ++++D G LL Sbjct: 123 LFARQQNPATASIFIKLRPGAQLSRENIQAIQHLIAASVPNLDPSRISIVDDKGTLLARG 182 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T N+ +L + A + + I L +G R+ V A+L+ D + + Sbjct: 183 TGNDSADAMLASAEEKKVAYESRVARIIEDLLGRTVGYGKVRAEVSADLDFDRITTQSEI 242 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 +DP+S+V RS + +A S P S VTV+QN+P P S ++ EE N Sbjct: 243 FDPESQVVRSTQTVTEANESHDRDPLSPVTVDQNLPTAQSGNNAGPISQNKQNRSEETIN 302 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396 YEI+ + ++ ++ RLS+AV+V+ G A Q + + L I +V +A Sbjct: 303 YEISRTTKNHVRESGQVRRLSVAVLVDGTYSLPRDGNPAAYQPRPEQELESIKALVRSAV 362 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+++ RGDT+ + +M F + ++ F+ + + +V + +L+ L Sbjct: 363 GLDAVRGDTLEVINMRFWSPEDDVQKPEEL-FLGMTKDDLFRIAEMVVLGIVAVLIILLV 421 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRN 514 + L ++ E +L+ A ++AL+++ D Sbjct: 422 IRPLITRAFEKADQQEEDDMDRLLADQSGMPAALAAPTGALAQDLALEAAQADEELEQMI 481 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +R+ V S ++ ++E + E ILR W E Sbjct: 482 DINRVEGRVRASSLRKVGEIVEKHPEEAVSILRNWLYQE 520 >gi|226941278|ref|YP_002796352.1| FliF1 [Laribacter hongkongensis HLHK9] gi|226716205|gb|ACO75343.1| FliF1 [Laribacter hongkongensis HLHK9] Length = 571 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 113/579 (19%), Positives = 230/579 (39%), Gaps = 44/579 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ + + +L + L+L + + +AA + P Y L+ L + Sbjct: 11 TFQQRVREALERYRALPGNKKLLLFGGMAAVASILVAAYLYTREPAYKVLFSNLPDREGG 70 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +++ AL++ N+ ++++ +G I VP+ V R+ LA++GLP +S G+EL D FG Sbjct: 71 QVTEALTKLNVPYQLA-DGGVIRVPAEQVYSTRLKLASEGLPKASG-IGFELMDN-QKFG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F +++ RA+EGE+ARTI+++ + +ARVH+ MP F + PTASV++ Sbjct: 128 ISQFAEQVNYQRAVEGELARTIEALGVVESARVHLAMPKQSVFVREQQLPTASVLLNLRP 187 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIVQ 235 IR+LVA+AVP L ++T++D G L++ + + + L V+ Sbjct: 188 GFILDAGQIAGIRNLVASAVPGLPQKNITIVDQEGNLISRMPDMEDGSAGLSRRQLDYVR 247 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 I+ + I L +G N R+ V A ++ + ++P++ S+ Sbjct: 248 QIETSLTKRIEAILEPIVGSGNARAQVTAAVDFSEVEQTAETFNPNTPPNAGAIRSQQTS 307 Query: 296 RSE---TSQPESAVTVEQNMPHV-----------------SDRKVPLPRSLENTDKKEEQ 335 S+ + N P ++ KE Sbjct: 308 ESQTREEAPQGGVPGALSNQPPNAAAAPVTLPPGTQAGLMPAPNGQQNQARPVKSSKEAT 367 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +NYE++ L+R++ AVVVN R T G + + + +++K+V A Sbjct: 368 TNYEVDRTIQHVRQQTGALKRVTAAVVVNFKRTTTADGNAKMTPLSEQEMQQLDKLVREA 427 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G RGD++ + + F + + Q D S + ++ ++ + L + F Sbjct: 428 MGFTQARGDSVQVVNASFADTAGSKAAL-QDRLFDYASNNPGEILKWVLGALVVLYLLFG 486 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 + + R G + + + + + Sbjct: 487 VIRPVVRDIVKPKPVLPPPGSDAAAAEGEGVAGEGGMTLEDLANL--------------D 532 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++ + A+I+++W ++ Sbjct: 533 PKELARREYDSMLEGARQVVRADPRMAAQIIKEWVNNDE 571 >gi|114330758|ref|YP_746980.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91] gi|114307772|gb|ABI59015.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91] Length = 547 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 123/566 (21%), Positives = 212/566 (37%), Gaps = 47/566 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + L L I LF + +P Y LY L + I Sbjct: 12 KKAFSQLDKIKQLPAQKKLGLMVAAAAVIALFAGTWLWSQTPDYRVLYANLSEQEGGAII 71 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + N+ ++ S++ SI VP + V + R+HLA QGLP + SG+E+ + FG + Sbjct: 72 DALQKMNVPYQFSESSGSILVPVNQVHEVRLHLAGQGLPK-GNLSGFEIL-ENQKFGSSQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++++ RALEGE+AR+IQS+S + ARVH+ + F + +P+ SV++ Sbjct: 130 FLEQVNYQRALEGELARSIQSLSAVQGARVHLAIARPSVFTRERQQPSVSVLLNLHHGRM 189 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQH 239 + AI HLV++++P+L + +VTV+D G LL+ + + G L VQ ++ Sbjct: 190 LSPEQVSAIVHLVSSSIPDLTVKNVTVVDQQGNLLSGQKENQMETGLDPGQLKYVQDMEQ 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS---IRLSKDAQR 296 I L G DN + V A+++ + E Y P++ E S K Sbjct: 250 NFVRRIEAILTPVTGQDNVHAQVTADIDFSRIERSEETYRPNNNPEESAAVRSQQKSESV 309 Query: 297 SETSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348 S + N P + ++ +KE +NYE++ Sbjct: 310 SISQPDGGVPGALSNRPPAPAQAPVETKEGQEETAQTTPTDTRKESTTNYEVDKTISHIR 369 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++ RLS AVVVN G ++ + +I +V A G + RGDT+T+ Sbjct: 370 QSTGQINRLSAAVVVNYRTRMNEEGNPINEPLSGEEIEKITALVKQAIGFSEARGDTLTV 429 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 T+ F + D + L+ +V F R Sbjct: 430 TNSQFRLKEEILEELPLWKDPDT----VLLAKDIGKQLLIAAIVLFFLQKIFRPFLKNLL 485 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 ++ + + I +Q+ Sbjct: 486 PPPPPAPVPALTAKDSEQDEAA-------------------------INTIKVMTLEQNL 520 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 + + A +++ W Sbjct: 521 EKARLLAANEPAIVANVVKGWVSGNE 546 >gi|207728374|ref|YP_002256768.1| flagellar m-ring protein [Ralstonia solanacearum MolK2] gi|206591620|emb|CAQ57232.1| flagellar m-ring protein [Ralstonia solanacearum MolK2] Length = 614 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 125/556 (22%), Positives = 230/556 (41%), Gaps = 50/556 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y LY + SD I AL + N+ +R +D S+I VP + V + R+ LAAQ Sbjct: 66 LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGDSAIMVPEANVHEVRLKLAAQ 125 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL + FG + F +++ RALEGE+ARTIQ++ + +ARVH+ + Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183 Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + A+P+ASV+++ +AI HLV+++VPNL + +VTV+D +G+LL+ Sbjct: 184 PSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLLS 243 Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 + + + L+ V+ I+ I L +G DN R+ V A++++D + Sbjct: 244 SSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQMAE 303 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322 Y P+ + S S ++ N P + R +P Sbjct: 304 TYRPNQDPANGVVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQAAA 363 Query: 323 ------------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + ++ NYE++ T + RLS Sbjct: 364 GQNGQNGQNAPNGQQQAAAAAGQAATNSVESSARDTTVNYEVDKTVRRTRAAVGTVRRLS 423 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVN + D+ + ++N +V A G +++RGD++ + + F Sbjct: 424 VAVVVNYRA-----DGKTWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLP 478 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEVGGK 477 + + + + + +G L++ F + L R N + G+ Sbjct: 479 MSRDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFVGR 538 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P + +S D + L ++ +Q + + + Sbjct: 539 EGDDPNAPIITGAAAPAGPELEGPSASAADGNAVPEELPQLKQNHEFEQKLETMRRIAQQ 598 Query: 538 NEERFAKILRKWARSE 553 N A ++++W E Sbjct: 599 NPRAVAAVIKQWVSIE 614 >gi|288962688|ref|YP_003452982.1| flagellar M-ring protein [Azospirillum sp. B510] gi|288914954|dbj|BAI76438.1| flagellar M-ring protein [Azospirillum sp. B510] Length = 579 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 171/574 (29%), Positives = 269/574 (46%), Gaps = 28/574 (4%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + SLGR R+L+LA L ++ ++ PH LY LE ++ RI+ A+ Sbjct: 7 SLIDTLRSLGRGRLLVLAGTGLGIVLAVAGMALLLSQPHMTALYSGLEPAEAGRIAKAVQ 66 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 E + +G++ISVP + V + R+ LA +GLPS GYELFD G+TSFMQ Sbjct: 67 EMGVPVNAGFDGTTISVPQADVSRVRMALAEKGLPSRGG-VGYELFDTDKPLGITSFMQR 125 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYK 186 I R+RA+EGE+ RTI+++SG+ AARVHIV+P+ F + +PTASV++R K Sbjct: 126 INRLRAMEGELGRTIETLSGVEAARVHIVLPEREEFSRSAPKPTASVVVRMRGRAAMDRK 185 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEIEMNI 245 A +IRHLV+AAVPNL VTV+DS+G+LL + + + A + + + Sbjct: 186 QALSIRHLVSAAVPNLKPSAVTVMDSSGELLLTEDDGPGLASARTDGLRVAAETRVARAV 245 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L A LG N R V AE+ + +R +DP+S+V RS + ++ +RS+ S E Sbjct: 246 EQMLTARLGAGNVRVQVAAEVETKREVVRSQSFDPNSQVVRSTQTVQEQERSQDSNGEPP 305 Query: 306 VTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VT EQN+P + P+S +T ++EE NYEI+ S T + + RLS+AV+VN Sbjct: 306 VTAEQNLPQRDVRAQSQGPQSSNDTKRQEETVNYEISNVSRETVIEPGDVRRLSVAVLVN 365 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 T G + + L + ++V +A G + RGD +T+ +++F++ + Sbjct: 366 GTWKTAPDGTRQYEPRSTEELRRLGELVRSAMGFSEARGDRVTVDNLEFVDLAPDLTPRP 425 Query: 425 -QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + L+R+ T+I ++ LV + LV +GL L R L+ P Sbjct: 426 LGDEIAETLTRNIMTLIQWVILLVLSALVILVGLRPLIRRVFPAPGPVAAEASAPALAAP 485 Query: 484 PISSAVT----------------------TGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + + Sbjct: 486 AGGPMPQLTGPAIAGAGAAGLAPADAGEAEAAAFGAAPMAPQLGIEETMDQLIELRTVEG 545 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 V S RL +++ + ILR W E+ Sbjct: 546 RVRASSIRRLGELVDQYPDEAIDILRSWLYEEVA 579 >gi|323139667|ref|ZP_08074709.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242] gi|322395099|gb|EFX97658.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242] Length = 565 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 196/554 (35%), Positives = 311/554 (56%), Gaps = 6/554 (1%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D++ + +LG ++ L + + + + ++++ P ++ LY L+ DV+RI Sbjct: 13 MDRITLLLDNLKALGTRKLAALGLTFALVVAIVSISAYYLSRPTFEVLYAGLDREDVSRI 72 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I F I+ G+++SVP +AR+ LA +GLP S +N+GYELFDKV + GLT Sbjct: 73 GSVLKSTGIPFDINTEGNAVSVPYGQTAQARMLLAERGLPQS-ANAGYELFDKVGALGLT 131 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIVMPD GSFR+ P+ASV+IR P Sbjct: 132 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVMPDEGSFRRAKQPPSASVIIRTEGPD 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 +A+AIRHLVA+++P +++ VTVL++ G +L++++ + K+L++ + IQ +I Sbjct: 192 DTSAAQAIRHLVASSLPGMNVDQVTVLNTDGMILSSSDGDATDAVPVKTLTLEKNIQKDI 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI + L +L + NF+ V A +N D +QI E +YDPDSKVERS+R K++ RS+ S Sbjct: 252 QDNIRRTLTPYLRLPNFQVTVRARVNTDRKQINETIYDPDSKVERSVRTVKESSRSQDSS 311 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 +A TV N+P +S + K EE +NYE+++K++ T Y +E LS+AV Sbjct: 312 SAAATTVTNNIPQNGVNNADGKQSNDENKKNEELTNYEMSSKTVTTVSGGYNIEHLSVAV 371 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 ++N+ E Q ID L EI +++S+A G+ RGD + +T++DF+ N+ + Sbjct: 372 LINRSAFAEPNKEPPKQEAIDRQLKEIEQLISSAAGLKKERGDALKVTAVDFMFNEHEMT 431 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 F+ +L H +++N + L LV GL RR + + + I Sbjct: 432 PVESPGFVAMLGSHLGSILNMIAALGIAALVVIFGLAPARRALLAESSTERTEPPPLIGM 491 Query: 482 PPPISSAVTTGLMPNDNI---ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + T D I A + I L I+ + +L +I+ + Sbjct: 492 GDQSFESPTFEAPTFDGIPGLAGATPGGAIAMSGPTLLEDISERRQDIARRKLEELIQND 551 Query: 539 EERFAKILRKWARS 552 E + A IL++W RS Sbjct: 552 EAQAAAILKQWMRS 565 >gi|163757999|ref|ZP_02165087.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43] gi|162284288|gb|EDQ34571.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43] Length = 560 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 240/561 (42%), Positives = 349/561 (62%), Gaps = 7/561 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M++L+QL Q K+ SLG+ R+L L V + L +AA F+N P + LY+ L D+ Sbjct: 1 MSLLNQLSQIGKNLASLGQARMLTLGGVGAASVALIIAAALFLNKPARETLYIGLSGEDM 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +IS+ L+E+NIDF +G+SI+VP+ M +AR+ LA +GLP SS+ +GYELFDKV S Sbjct: 61 TQISLVLAESNIDFASGLDGNSITVPAGMTSRARMLLAERGLP-SSNTAGYELFDKVGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQSI+GI AARVH+VM D G+FR+ +P+ASVM+R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSINGISAARVHLVMADRGNFRRGEQQPSASVMVRTG 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 ++A +IRHLVA++VP L++ +VTVLD+TG+LL + N +SLSIVQ +Q+ Sbjct: 180 TNLAPRTANSIRHLVASSVPGLNVDEVTVLDATGQLLATGDDFSNSNLNRSLSIVQLVQN 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E+E NI KALA FLG++NFR++V A +N D+QQ++E ++DP+S+VERS R++++ Q S Sbjct: 240 EVETNIEKALAPFLGIENFRASVTATVNTDSQQVQETIFDPESRVERSTRVTRENQTSNQ 299 Query: 300 SQPESAVTVEQNMPHV--SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S ++ TVEQN+P + P+S E ++KEEQ+NYEIN+K I+T ++Y +E L Sbjct: 300 SATDTPATVEQNIPDQGPAAGGAAGPQSSELAERKEEQTNYEINSKVISTVRNSYTVEGL 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AVVVN+ R+ ++ G + + + ++LAE+ +V+ A G++ RGD IT MDF+ ++ Sbjct: 360 SVAVVVNRARIADMYGGAPTEEQTAAFLAEVQTLVNLAAGVDDERGDRANITVMDFMASE 419 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L + Q F D L H T+INA+ F+ +L+ G L + + V Sbjct: 420 LLTADAAQGGFGDTLKTHIGTIINAIAFITVAVLLIMFGFRPLLGAGKTAEQAEDAVDDI 479 Query: 478 SILSP---PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + P P M N V + + RL M Sbjct: 480 GLELPDFSPAAMGGPGAMPMEGFGADFGFGEDGDSELEMEESGSFNRRVKEGPERRLARM 539 Query: 535 IEINEERFAKILRKWARSEIE 555 +EINEER AKILR+W+ E Sbjct: 540 VEINEERAAKILRQWSSGEAA 560 >gi|302037604|ref|YP_003797926.1| flagellar M-ring protein FliF [Candidatus Nitrospira defluvii] gi|300605668|emb|CBK42001.1| Flagellar M-ring protein FliF [Candidatus Nitrospira defluvii] Length = 518 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 124/555 (22%), Positives = 224/555 (40%), Gaps = 49/555 (8%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F + I+ + I +A + P L+ L V D + I L + Sbjct: 1 MFSKFNQFTINQRFIILLALAGSIAGLVAVTLWTQQPDMQVLFANLAVDDASGIIDKLKD 60 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A + + ++ G+++ VPS+ V R+ LA QGLP GYE+FD+ G++ F+Q++ Sbjct: 61 AKVPYETANGGTTVLVPSAQVHDLRLELAGQGLPHGGG-VGYEIFDRTT-MGMSDFVQKL 118 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187 RAL+GE+ARTI + + ARVH+ +P+ F R ASV+ +RA Sbjct: 119 NYRRALQGELARTITQMPEVERARVHLAIPERRLFATEQDRARASVVVSLRASQTLSKAQ 178 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNI 245 + + HLV+++V L DVTV+D G LL+ +++ + G + + ++ +IE I Sbjct: 179 IQGVVHLVSSSVEGLQSRDVTVVDGHGNLLSNTSSDESAGLSGTQMEYQRTLEKDIETRI 238 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 L +GV+ V + L+ + E YDP+ +V RS + ++ Sbjct: 239 QTMLERIVGVNKAVVRVSSVLDFRKIETTEERYDPNGQVVRSEQRGQEKSSGVNGTSGGV 298 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VE N+P ++ + S N K E NYEI+ +++LS+AV+V+ Sbjct: 299 PGVESNVPGGTEAEGGQTSSNNNQTK-NETVNYEISRTVSRIVEPTGTIKKLSVAVLVDG 357 Query: 366 GR-------LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 + + + I +IV A G ++ R D + + S+ F Sbjct: 358 TYEGGGKAGEAGADQPKKYVPRSEEEMKRIEEIVKKAMGYSTERQDQVEVVSIQFG--LG 415 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 T V S+ + + V + L+ F+ + L + G + Sbjct: 416 AEEPTGGVEAAPDASKAWMPYVRYAVGGLLFFLIFFMVVRPLMVMLVQSAPAAGGGETPA 475 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + + A +G P ++L M + N Sbjct: 476 LPASVGQVEAAISGKQPG---------------------------------QILDMAKNN 502 Query: 539 EERFAKILRKWARSE 553 A ++++W ++ Sbjct: 503 PANTAVVVKQWLKNN 517 >gi|146342729|ref|YP_001207777.1| flagellar MS-ring protein [Bradyrhizobium sp. ORS278] gi|146195535|emb|CAL79562.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. ORS278] Length = 532 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 127/549 (23%), Positives = 228/549 (41%), Gaps = 24/549 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R+ + +V + F V +P L+ L + D + I Sbjct: 1 MQGLLDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F I + GS I VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQGIAFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I + AARVH+V+P+ F + P+AS+++R Sbjct: 120 QNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSLEAN 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AIRHLVA+AV L V+++D G+LL A + + + Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRKQVE 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 +++ +G R + A+ + + YDP+ +V RS + ++ + S + V Sbjct: 240 DIVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSESNGQVTV 299 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 N + + + + + K EE +NYEI+ + + ++ R+S+AV+V+ Sbjct: 300 ---NNELPGNQQNQQGQQPKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGA 356 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G + + L I +V +A G + +RGD + + ++ F + + + Sbjct: 357 YSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQISEPT 416 Query: 427 SFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 F+ +L VI V ++ ++V F+ + L + + +I Sbjct: 417 GFLGMLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAITD-- 474 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + + +++ V QS R+ + + N A Sbjct: 475 ---------------ETAQAQAHAQQTAQLIDVAQVQGQVHAQSVHRVGELADRNPGEAA 519 Query: 544 KILRKWARS 552 I+R+W Sbjct: 520 AIIRQWLAE 528 >gi|237653561|ref|YP_002889875.1| flagellar MS-ring protein [Thauera sp. MZ1T] gi|237624808|gb|ACR01498.1| flagellar M-ring protein FliF [Thauera sp. MZ1T] Length = 571 Score = 360 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 131/567 (23%), Positives = 228/567 (40%), Gaps = 33/567 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ Q ++ +L + + A I + I L + + +P Y L+ L+ D +I Sbjct: 24 RMQQALQNLAALSTRQKIAGAVAIALAIALVAGSLLWNRAPEYAVLFSNLDERDGGQIIA 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + NI +R+S G +I VP + V + R+ LAA GLP S +G+EL D G++ F Sbjct: 84 ELQQRNIPYRMSPTGHAILVPQAQVHETRLRLAADGLPK-GSLAGFELMD-GQKLGISQF 141 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--S 183 +++ RALEGE+ RT+Q+I + +ARVH+ MP +F + RPTASVM+ Sbjct: 142 NEQVNYQRALEGELTRTVQAIDAVASARVHLAMPKQTAFLRDDQRPTASVMVNLRGGRIL 201 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHE 240 I HLV+++VP + V ++D GKLLT + L V+ ++ Sbjct: 202 SPDQVAGIVHLVSSSVPRMHAEGVKIVDQNGKLLTEQADPLLRAGLDATQLEYVRLLEQG 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ-RSET 299 I+K LA +G N+ + V A+++ + + Y P+ +++IR + ++ + Sbjct: 262 FIERIDKILAPLVGKGNYGAQVAADVDFNQVEQTAETYKPNPTPDQAIRSQQTSEAFNPQ 321 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRS--------LENTDKKEEQSNYEINTKSIATTHDN 351 + N P V + + NYE++ Sbjct: 322 PGAQGVPGALTNQPPVPATAPITNPQVAGGGGAQGLASGNRSAVLNYELDRNIQHVKQAV 381 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++RLS+AVVVN L G + D +A I +V A G N+ RGDTI + S Sbjct: 382 GQIKRLSVAVVVNNRTLPGPDGTPTNVPLPDEEIARITNLVREAVGYNADRGDTINVASG 441 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F ++ + + +N L+ L+ L F + L R K+ Sbjct: 442 AFADDG--SGAAPPPWKDPEIVALGKEGLNWLLVLIAILFAYFGVIRPLLRTVVPPKPKE 499 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + G + + + + F Sbjct: 500 EKKGAAAGEEGGEGEEGEEGVRVTLSGETGEGEETETFEQRLERARAAAR---------- 549 Query: 532 LHMIEINEERFAKILRKWARSEIEDRY 558 + + A +++ W E R Sbjct: 550 -----NDPKMVANLIKDWMGMNEEARK 571 >gi|251789188|ref|YP_003003909.1| flagellar MS-ring protein [Dickeya zeae Ech1591] gi|247537809|gb|ACT06430.1| flagellar M-ring protein FliF [Dickeya zeae Ech1591] Length = 568 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 127/582 (21%), Positives = 226/582 (38%), Gaps = 61/582 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY L D I L Sbjct: 13 KNFGEILDRLRANPRIPLLIAAAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + NI +R +++G++I +P+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 73 GKMNIPYRFTESGAAIMIPADKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 +I RALEGE+ART++++ I ARVH+ +P F + P+A+V + Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 AI +LV+++V L VTV+D TGKLLT N+ + L I+ + Sbjct: 191 NQINAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDGSGRDLNAAQLKYANEIEGNYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-- 302 I LA +G N + V A+++ ++ + Y P+ +S S+ + +S+ Sbjct: 251 IEAILAPVVGAGNVHAQVTAQIDFANREQTDEQYQPNQSPNQSAVRSQQSSQSDQRGGSN 310 Query: 303 -ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENTDKK 332 N P + + + Sbjct: 311 VGGVPGALSNTPSPAPTAPISTPPANNANNTNNTNNTNTAGTNTQTSGNNAANQTYNSRH 370 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 ++ NYE++ T ++RLS+AVVVN G+ A D L +I +V Sbjct: 371 DQTINYEVDRTIRHTKQSTGNIQRLSVAVVVNY--TQGEDGKPA--ALSDEQLKKIEALV 426 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 + G ++ RGD++ + + F F + A +L+ ++ Sbjct: 427 RESMGFSTERGDSLNVVNTPFTITDTSGGELP----FWQKQVFFDLLTAAGRWLLVLIVG 482 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 L +R + + L +VT M + Sbjct: 483 WILYRKLVRPQLQRRVQIQEAAAAAAALRGQDPDVSVTISSMEEE-------------LQ 529 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + R ++ + Q R+ + E + A ++R W +E+ Sbjct: 530 KKSEQRAHTEMHSQ---RIRELAENDPRVVALVIRHWMSNEL 568 >gi|332095496|gb|EGJ00512.1| flagellar M-ring protein FliF [Shigella dysenteriae 155-74] Length = 473 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 200/467 (42%), Gaps = 32/467 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 + +RGD++ + + F + ++ A + Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGCW 457 >gi|94314180|ref|YP_587389.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34] gi|93358032|gb|ABF12120.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34] Length = 563 Score = 360 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 110/589 (18%), Positives = 218/589 (37%), Gaps = 62/589 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M L + L + + + +P Y LY L D Sbjct: 1 MNATATLPNGTALLEKVKANPRLPMMLGGAALVAAIAVGVMWSRAPDYKVLYSNLSERDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + +L + N+ ++ ++ G ++ VP+ V + R+ LA+QGLP S +G EL D F Sbjct: 61 GAVIQSLQQMNVPYKFAEGGGAVMVPADKVAETRLRLASQGLPKSG-TTGMELMDN-QKF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G++ F +++ R LEGE+AR+I+SI + +ARVH+ +P F + +PTASV+++ Sbjct: 119 GISQFAEQVNYQRGLEGELARSIESIGAVQSARVHLAIPKPTLFVRERQKPTASVVLQLY 178 Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 AI HLV+++VP L ++++D G LL+ + L VQ ++ Sbjct: 179 PGRAVDEGQVAAITHLVSSSVPELTPKSISIVDQQGNLLSGTNDRS-LDASQLKYVQQVE 237 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + LA LG DN + V A+++ + + + Y P+ ++ S+ S Sbjct: 238 QGYVKRVESILAPILGKDNIHAQVTADVDFSSVEHTDESYKPNQDPTKAAIRSQQTSESN 297 Query: 299 TSQPESAVT--------------------------------VEQNMPHVSDRKVPLPR-S 325 + + N P + + + Sbjct: 298 SQGGTPVGGVPGALSNQPPAAAAAPVTTPQPPRQPGQPNPPAQANQPAQTTQTTQTAEKT 357 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 + +++ +NYE++ ++RLS+AVVVN + G+ + L Sbjct: 358 GPSNSRRDSTTNYELDRVVRHVQQAAGGVKRLSVAVVVNYRTKVDAKGKPVTEALSAKEL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A+I + A G ++ RGD++ + + F + V V + T + L+ Sbjct: 418 AQIENLTKEAMGFSADRGDSLNVVNSPFTS-DIKTEPEVPVWKQPQMIDLAKTGVGYLLL 476 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 + + + F + R + + + T + Sbjct: 477 ALLAVFLWFKVARPVLRKYTAPPLPAPTETAAATEAVLLPPEEETNPEVLRL-------- 528 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + + + A +++ W ++ Sbjct: 529 ---------------AAKYESDLALVRDAAQRDPRLVASVIKTWMANDE 562 >gi|194292866|ref|YP_002008773.1| flagellar ms-ring protein [Cupriavidus taiwanensis LMG 19424] gi|193226770|emb|CAQ72721.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to the fliF family [Cupriavidus taiwanensis LMG 19424] Length = 576 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 112/560 (20%), Positives = 215/560 (38%), Gaps = 72/560 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ LA+Q Sbjct: 42 LWSRGPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ +P Sbjct: 102 GLPKSG-TAGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159 Query: 161 MGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +PTAS++++ AI HLV+++VP L ++++D G LL+ Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGNLLS 219 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ER + L VQA++ I L +G DN R+ V A+++ + + Y Sbjct: 220 NTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTDESY 279 Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSD------------------ 317 P+ R+ S+ S P N P + Sbjct: 280 KPNQDPTRTAIRSQQTSESTQQGATPPGGVPGALSNQPPAAAVAPVTTPQTPRAGQAPGQ 339 Query: 318 -----------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S ++++++ NYE++ + Sbjct: 340 AGAPGAGQPGQPGQAGQAGQAAQGATATASSGPSSNRRDSTVNYELDRSVRHVQQAPGGV 399 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS+AVVVN + + G+ + + LA+I + A G ++ RGD+I + + F Sbjct: 400 RRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSAERGDSINVVNSPFT 459 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + + ++ L+ + L F + R + E Sbjct: 460 AEREKAEPELPLWKQPDMIALGKSLAGYLLLALLALFAWFKVARPILRRYTAPPLPAPEP 519 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 ++ P ++ + + + Sbjct: 520 KDETEAVLLPPEEPANPEILRL------------------------AAKYESDLALVRDA 555 Query: 535 IEINEERFAKILRKWARSEI 554 + + A +++ W ++ Sbjct: 556 AQRDPRLVASVIKNWISNDN 575 >gi|188579876|ref|YP_001923321.1| flagellar MS-ring protein [Methylobacterium populi BJ001] gi|179343374|gb|ACB78786.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001] Length = 570 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 186/570 (32%), Positives = 303/570 (53%), Gaps = 18/570 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGIGAYYLSRPAQETLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G +L A + GK ++ +++ Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + L+ +LGV NF +V +LN D E +Y+PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLSPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAGPDDKAAL-DKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + +A + EV + Sbjct: 419 LEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPEAAQSEVAALA 478 Query: 479 ILSPPPISSA--------------VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 P +A G + + + L + ++ Sbjct: 479 GPEGAPALAAGMASGLAADGNMALAAPGTALPGAVGAGEAAKLPAPGVAGLLEELEDKMA 538 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554 + RL +I+I+EE+ A +L++W E Sbjct: 539 RSPQKRLEQLIDIDEEQVAAVLKRWLMREE 568 >gi|171057703|ref|YP_001790052.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6] gi|170775148|gb|ACB33287.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6] Length = 576 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 125/566 (22%), Positives = 212/566 (37%), Gaps = 40/566 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F L R L LA +L I L A F+ + L+ L D I L++ Sbjct: 23 FAARLAGLPLGRKLALAGGVLALIGLLAMAVFWNTGNNDKVLFANLSDKDGGAIVAQLTQ 82 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ ++ G++I VP+ V R+ LA GLP S G+EL D FG T F + + Sbjct: 83 MNVPYKFTEGGTAILVPAEKVHDVRLKLAQAGLPK-GSTVGFELMDNA-RFGTTQFQERL 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 R LEGE+ R+I ++S + AARVH+ +P+ F + +P+ASV++ Sbjct: 141 NFQRGLEGELVRSITALSAVEAARVHLALPNQNGFFRDQQKPSASVLLTLHPGRTLDRAQ 200 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--------KSLSIVQAIQH 239 I HLV+A+V L+ V+VLD +G LL + L V I+ Sbjct: 201 LAGIVHLVSASVAELNPKAVSVLDQSGSLLAGPPEGMAGAAGGTNGLDAQQLQYVNQIET 260 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS---KDAQR 296 I L LG DN R+ V AE++ + + P+ + S + Sbjct: 261 VYTKRILDILEPVLGRDNLRAQVSAEIDFSQTESTSEEFKPNQGDAPAAVRSAQSTEQSN 320 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPR-----------SLENTDKKEEQSNYEINTKSI 345 + P + N P + T ++E +NYE++ Sbjct: 321 PGAAMPAGVPGAQSNQPPTPATAPINGQAQQMQAAQGGVGSNGTARREAVTNYEVDKTVR 380 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T + +++RLS AVVVN +T+ G L ++ +V G + RGD+ Sbjct: 381 VTRAASGQVKRLSAAVVVNSRSVTDKKGNVQVVPLTPEELDKLTALVQETVGFSKDRGDS 440 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + T + + T+ L + L++ F + + Sbjct: 441 VKVINAPF-KVDKPVEDTTPLWKQPEVQDMVRTLALPLGLALLALIIVFGAIRPALKAAQ 499 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + P + L + + + + R Sbjct: 500 PPEPVQLVDAVVDDAQELPALEG-----SAEEAAHLAAGHMNALPAPEDDAQR------- 547 Query: 526 QSDLRLLHMIEINEERFAKILRKWAR 551 + M + N A I+R W Sbjct: 548 -RLEQARKMAKDNPAAVANIVRGWVS 572 >gi|206890854|ref|YP_002248115.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742792|gb|ACI21849.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM 11347] Length = 505 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 124/555 (22%), Positives = 229/555 (41%), Gaps = 53/555 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI D++ ++ ++ R L LA + L+ + + ++ Y LY L D Sbjct: 1 MAITDRVKTVLENIKNMPLNRKLALAGLTLIVFAIILTLFLWLPKQDYQVLYSNLSAEDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L E + +++ DN +I VPS V + R+ LA+QG+P S G+E+FDK Sbjct: 61 GNVINKLKEKKVPYQVKDN--AIYVPSQKVHELRLELASQGIP-SGGGVGFEIFDKTQ-I 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT F Q + +RAL+GE+ RTI+ + + RVHI +P+ F + PTASV+++ Sbjct: 117 GLTEFSQRVNYIRALQGELQRTIKQLQEVDQVRVHIAIPEKSIFTEKEDHPTASVVLKLK 176 Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAI 237 + +I HLV+++V L VTV+D G LL+A + + + + I Sbjct: 177 PGRALSKEQVSSIVHLVSSSVEGLSPQYVTVVDQYGNLLSAPKDSTQLAEATHIEYKRNI 236 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + E NI L +G V A+++ + E YDPD+ R+ + +++ ++ Sbjct: 237 EKTYEKNIQSMLENIVGKGKAIVRVSADIDFSKVEKVEEKYDPDTIAIRNEQRTQE--KT 294 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + Q V N P + + + K++E NYE++ +++++ Sbjct: 295 MSPQQGGIPGVLSNQPGQP--QTGATQQNIQSQKQQESINYEVSKSISKILQSTGQIKKI 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AV+++ E G+ + D + + ++V A+ G N RGD + + S+ F Sbjct: 353 SVAVLIDGIY-KEEKGKKVYVPRSDEEIKKYQELVQASIGYNKERGDYVIVESIPFEIVP 411 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 G T++ L+ LV L+ + + L + Sbjct: 412 EEKPGIDYWGI-------ATTILKYLIPLVIIALIILFVVKPIIELLKKPVEE------- 457 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + ++ + + H+ Sbjct: 458 ---------------------------KIKKKEIVISEEAVPPVMKERDIREEIRHIART 490 Query: 538 NEERFAKILRKWARS 552 N ++ ILR+W Sbjct: 491 NPKKVIAILREWITE 505 >gi|224373126|ref|YP_002607498.1| flagellar MS-ring protein [Nautilia profundicola AmH] gi|223589285|gb|ACM93021.1| flagellar M-ring protein FliF [Nautilia profundicola AmH] Length = 561 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 133/565 (23%), Positives = 234/565 (41%), Gaps = 20/565 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN-----SPHYDNLYVKL 55 M + Q +L + + +++ S I+ + + F Y L+ L Sbjct: 1 MNFEELFKQIIAFTKNLNKRQKIVIISAIVALVAIISFLVVFNTTSSKTKTGYAILFDNL 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D I L + I + I ++G I VP +V K R+ +AAQGLP SS G+ELFD Sbjct: 61 SSKDAALIVQYLDKKQIPYVIPEDG-VIEVPKDVVQKIRLDVAAQGLPKSS-KVGFELFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K + FG+T F Q++ +RALEGE+ RTI+S+ + +A V+I +P F + PTASV Sbjct: 119 KNS-FGITDFEQKVKYLRALEGELGRTIESLDAVESATVNIAIPKDSVFVEKQTPPTASV 177 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 +I+ K + I++LVAAAVP + +V ++D G LL N+ +L Sbjct: 178 VIKLKPNMVLTPKQIQGIKYLVAAAVPKMKPENVKIIDQYGNLLGENDELTQNNELLKAE 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + ++ +E I LA +G + + V +++ + + +Y PD+ V Sbjct: 238 IIYKKRMEKALEDKIVSILAPVIGGKNKVVAKVNLDIDFSQVKSKSTIYSPDNVVRSEQT 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 L + + + N+ V K + K + +NYEI+T Sbjct: 298 LEESRTGYKPKEVGGVPGAVSNVGPVQGTK--SNEVKDKYTKSQTTTNYEISTTVKDVKE 355 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K++R++ AVVV+ + G+ L I +V G + +RGD+++++ Sbjct: 356 PLAKIKRITAAVVVDGHYKEDKDGKKEFVPLTKLELTNIENLVKNTIGYDPKRGDSVSVS 415 Query: 410 SMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S F N N T V M + + + L +L +++ + Sbjct: 416 SFQFTGNSANNEPTSAVGKVMQSVQMYLGPISGILKYLFLAIVLFVFYKKVITPFTQKML 475 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 K E + + I+ + Q + S + + + Sbjct: 476 EVKIEEEPEYVKPDIEINEEEVESTYDKIKELKEKVEQQLGISSDVNEEEL---KYEVLL 532 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 R++ M E E AK+L + E Sbjct: 533 DRIVKMAEEKTEEVAKVLENLIKEE 557 >gi|238796932|ref|ZP_04640436.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] gi|238719192|gb|EEQ11004.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] Length = 563 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 116/582 (19%), Positives = 223/582 (38%), Gaps = 59/582 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + + + ++L + + L +A + +P Y LY + D I Sbjct: 11 NNTVNLMAALERIRASPKIVLLICVSAAVTLLIALLLWAKAPDYRVLYSNISDQDGGAIV 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ N+ +R D G +I VP V +AR+ LA GLP S G+EL D+ FG++ Sbjct: 71 AQLAQMNVPYRFEDRGGAIMVPVDKVYEARLKLAQLGLPKGGS-VGFELLDQE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ RALEGE++RTI+++ + ARVH+ +P F + +ASV + N Sbjct: 129 FSEQVNFQRALEGELSRTIETLGPVNGARVHLAIPKPSMFVREQKPSSASVTVNLSNGRS 188 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + AI +L+A+AVP L+ +VT++D G LLT + L ++ + + Sbjct: 189 LESGQVSAISYLIASAVPGLNADNVTIVDQGGHLLTQRGGQEVQTS-QLKFTSEVEADFQ 247 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSET 299 I LA +G +N ++ V A+L+ T + + P++ ++ S+ D+++ Sbjct: 248 QRIQSILAPIVGRNNVKAQVTAQLDFTTHEQTAEQFQPNTASDKMSIRSRQSSDSEQGSK 307 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN-------------------------TDKKEE 334 + N P ++++ Sbjct: 308 NGVGGVPGALSNQPPTPATAPITQPVGAKEATPTTPTTPGAKGAATTVATPVPFNNRRDN 367 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +NYE++ +ERLS+AVVVN + + +IN +V Sbjct: 368 TTNYELDRTLTHIKRSAGSIERLSVAVVVNYL----PAKEGVPAALSKAQMDQINSLVKE 423 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A G + RGDT+ I + F + + + + ++ A +L+ ++ F Sbjct: 424 AVGFSVERGDTVNIVNSLFSDVEEEVAPP-----FWKQAGFINLLMAAGRYLLVAIVAWF 478 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 A++ + + A + + + Sbjct: 479 FWRKAIQPAWMRNQELILARLELEKEARQAELDANKRKAESGAKNKAEQRVEVELNTQS- 537 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 L + E A +LR+W +++ Sbjct: 538 ----------------LRELAEQEPRVIALVLRQWMNKDLDS 563 >gi|320354317|ref|YP_004195656.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032] gi|320122819|gb|ADW18365.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032] Length = 550 Score = 359 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 134/551 (24%), Positives = 240/551 (43%), Gaps = 25/551 (4%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 ++ + R + LA+V + + LF + Y LY L SD + + L Sbjct: 17 KTLVETVKAWPMPRKIALAAVTAITLGLFAFIIVQARTADYQLLYGNLAESDASSVVEWL 76 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 NI +++++NG +I +P+ V + R+ LA+ GLP G+E+FDK SF LT F+Q Sbjct: 77 KGQNIPYKLANNGHNILIPAKDVYETRLSLASLGLPQGGG-VGFEIFDK-QSFALTDFVQ 134 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185 ++ RAL+GE+ARTI S+ + ARVH+ +P+ F+ TASV+I+ Sbjct: 135 KVNYSRALQGELARTIASLGPVETARVHLALPEKRLFKDQQKPATASVIIKLAPGKRLSE 194 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIE 242 E + HLV++++ LD G VTV+D G +L+ N+ L ++ +E Sbjct: 195 AQIEGVVHLVSSSIEGLDPGQVTVIDQNGNVLSRIGEKGLSGNLSPDMLEFQMQVEQRLE 254 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 L LG N V A L+ + E +DP+ V RS +LS++ +S + Sbjct: 255 DRAQALLDKSLGAKNAMVRVSATLDFAQTEKTEETFDPEEPVIRSEQLSEE--KSGSEIT 312 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V+ N+ + + + + + +NYEI+ TT + +LS++V+ Sbjct: 313 GGVPGVQSNLEGNTA---QTAGATPPSSRSQRTTNYEISKVVSKTTQPVGTISKLSVSVL 369 Query: 363 VNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V + A + + ++ L + +V++A GI++ RGD I +TSM FLE+ Sbjct: 370 VADKVVPGKDKEPAKTEPRSETELKTLQTMVASALGIDTARGDKIEVTSMPFLESAEDGG 429 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 Q L + I + ++G +L+ + L + + D + + + Sbjct: 430 ---QEGMAANLLYQYLPFIRYGLLILGAVLIYLFMIRPLMKTLHRDVTEHYKTVEEMEAE 486 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 ++A G P AL + + ++ +E + Sbjct: 487 QVQAAAAREPGAGPAGAGALVGGAAYREAMESAPLDPLE---------KIRKGVEQDPVF 537 Query: 542 FAKILRKWARS 552 A +L+ W Sbjct: 538 SAHVLKGWIHE 548 >gi|197120199|ref|YP_002140626.1| flagellar M-ring mounting plate protein FliF [Geobacter bemidjiensis Bem] gi|197089559|gb|ACH40830.1| flagellar M-ring mounting plate protein FliF [Geobacter bemidjiensis Bem] Length = 523 Score = 359 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 128/556 (23%), Positives = 234/556 (42%), Gaps = 47/556 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + +L + L++ V L ++ F A N Y L+ L D I Sbjct: 3 EGLKKLLEPFLALSTAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E + ++IS +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+T Sbjct: 63 KKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGMTE 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F+Q++ RAL+GE+ RTI I+G+ +ARVH+ +P+ F+ TASV+++ + Sbjct: 121 FVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFKDQEKPATASVVLKMKSNRQ 180 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239 + + I HLVA+++ +D VTVLD+ GK+L+++ + + G +A + Sbjct: 181 LREGEVQGIVHLVASSIEGMDPEQVTVLDTRGKVLSSHSPNDPTSKVAGARQDTQRAFEK 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + L +G + V A + + E YDP+S RS + S++ + Sbjct: 241 TEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEEK-GGGS 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S V+ NM K +E NYE++ + L ++S+ Sbjct: 300 STASGVPGVQSNMGRAQGAAGSTTGGGS---KTDETLNYEVSRSTARIIEPVGSLSKVSV 356 Query: 360 AVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 A++V+ + Q + + +I +V +A G N+ RGD +T+ ++ F E Sbjct: 357 AILVDGKYELSPGAKPGATPKYQPRSPDEMQKIESLVKSAVGFNAERGDQVTVANIPFQE 416 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 I+ T+I + + L + F + L ++ I+ A + Sbjct: 417 TGDQGGEQPSWYDAPIVQ----TLIKNGLIGLAFLALLFYVIRPLMKMLKIEKAAHHFLP 472 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 D+ ++ + + L L+ + Sbjct: 473 ----------------------------IQDDVEQQQMLEMQKVEHEKMRVTQLELVEKV 504 Query: 536 EINEERFAKILRKWAR 551 + + + A+IL+ W Sbjct: 505 KQDPYQAAQILQNWLT 520 >gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] gi|300074160|gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] Length = 569 Score = 359 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 122/545 (22%), Positives = 221/545 (40%), Gaps = 42/545 (7%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + Y L+ D I +L + N+ ++ SD G++I VP +MV AR+ L Sbjct: 38 GIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKL 97 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 AAQGLP N G+EL + G++ F++++ RALEGE+AR++ S++ + ARVH+ Sbjct: 98 AAQGLPK-GGNVGFELM-ENQKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLA 155 Query: 158 MPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + +PTASV++ + AI HLVA++VP L VT++D G Sbjct: 156 LPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGN 215 Query: 216 LLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 LL+ + L VQ +Q +I + +A +G N R+ A+++ + Sbjct: 216 LLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSE 275 Query: 273 IREIVYDPDSKVERSIRLSKDAQ--RSETSQPESAVTVEQNMPHVSDRKVP--------- 321 Y P+ + + SK + S ++ N P Sbjct: 276 QASEAYKPNQTKDSAAVRSKQSSEANSASNGTSGVPGALSNQPPAPATAPIVNPAVANGA 335 Query: 322 -------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + +K+E NYE++ T + RL++AVVVN R Sbjct: 336 ANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRT 395 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + G+ + ++ +I +V A G N RGD++ + + F V + Sbjct: 396 MDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQF---STDMEPEVPLWK 452 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + + ++ L + F L + + + ++ K+ ++A Sbjct: 453 QPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAAAAA 512 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 V G P+D A+ + + + R K + + + + A I++ Sbjct: 513 VAAGFDPDDPDAIVNLSGESEVDER--------AQYKANLETAKQWAKNDPKLVASIIKS 564 Query: 549 WARSE 553 W +E Sbjct: 565 WVNNE 569 >gi|307822872|ref|ZP_07653103.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96] gi|307736476|gb|EFO07322.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96] Length = 611 Score = 359 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 134/573 (23%), Positives = 241/573 (42%), Gaps = 36/573 (6%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 K L R + L + + + + +A + P Y LY ++ SDV+ I L++ Sbjct: 44 IKGLAGLTIARQIGLMLGLALSVAIGVAIVLWSQEPSYGRLYSEIGESDVSEILEILNKE 103 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +++ +I VP V ++ LAAQGLP S+S GYEL DK FG + ++ + Sbjct: 104 NIKYKVETGSGAIMVPMDQVSAVKLKLAAQGLPKSNS-LGYELLDKEQGFGASKGVETVR 162 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGEIARTI SI + ARV + +P F + +P+ASV++ Sbjct: 163 FQRALEGEIARTIMSIQNVKTARVLLAIPAQSVFVRERKKPSASVIVNLYQGRSLDKGQV 222 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246 E+I HLVA++VP L+ VTV+D G+LL +N+ N+ K + I+ + I Sbjct: 223 ESIIHLVASSVPQLEAEQVTVVDQKGQLLNSNDSSVAGNLTSKQFEYKKNIEEHLMGRIE 282 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L+ +G D R + A+++ + +++PD RS + S++ +S S + Sbjct: 283 NILSPLVGSDGMRVQISADVDFTETDRTQEMFNPDLPALRSEQTSEE--QSTQSAIQGVP 340 Query: 307 TVEQNMPH-------------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 N P + P + + K NYE++ T Sbjct: 341 GALSNQPTPAGAAPDPAAAPAAPGSSATTAAAAPTSTATPGSAAKNATRNYELDKTITHT 400 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 L RLS+AVVV+ + + G Q + + +V A G +S RGD +T Sbjct: 401 RLATGALRRLSVAVVVDDRHVPQSDGTVKGQSYSQEDINRFSDLVKQAVGFDSSRGDQVT 460 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNI 466 +T++ F ++L + + F ++ + ++ L + F L +R L Sbjct: 461 VTNVTFKIDELIEALPAIPVWE---QGWFLDLMKQVAAVLAVLFLLFGVLRPTMRSLVGR 517 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN------ 520 D +K + +A+ + Q++ N + Sbjct: 518 DIEEKKALALAEAQEKAIAIGGSVRFNDQGAPVAVPAGQQNVSFAKPNEMEMQDLLLLDV 577 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + +++ + + A++++ W + + Sbjct: 578 PQSYEHRLEYVKRLVDDDSKVVAQVIKSWIKKD 610 >gi|188534120|ref|YP_001907917.1| flagellar MS-ring protein [Erwinia tasmaniensis Et1/99] gi|188029162|emb|CAO97034.1| Flagellar basal-body M-ring protein [Erwinia tasmaniensis Et1/99] Length = 571 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 120/548 (21%), Positives = 226/548 (41%), Gaps = 56/548 (10%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y LY L D I L++ N+ ++ D G ++ VP++ V + R+ LA+Q Sbjct: 46 LWAKQPDYRVLYNNLSNEDGGAIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL DK FG++ F ++I RALEGE+ARTI ++ + ARVH+ MP Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQINYQRALEGELARTIATLGPVKDARVHLAMPK 163 Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV ++ A+ H+V+++V + G+VTV+D +G+LLT Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPQGNVTVVDQSGRLLT 223 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 N+ R++ L ++ + I L +G N + V A+++ + ++ + Sbjct: 224 QNDTTGRDLNDAQLKYASDVETRYQQRIEAILGPIVGNSNVHAQVTAQIDFNKREKTDEQ 283 Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMP--------------------- 313 Y P+S E+ S+ S N P Sbjct: 284 YAPNSNPEQQAVRSRQTSNSEQLGGQSAGGVPGALSNQPAPANAGPVTTPNNTNANGANG 343 Query: 314 -------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 ++ ++ + + + +NYE+N + T + +++RLS+AVVVN Sbjct: 344 ANANNGQPANNAASGAQKTSPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR 403 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 ++ + +I + A G + +RGD++ + + F +N Sbjct: 404 S----DAAGKPIALNEAQIKQIEDLTREAMGYSEKRGDSLNVVNSPFTQNSDLGDELP-- 457 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + A +L+ ++ L LR A + + + + Sbjct: 458 --FWKQPAFIDQMFEAGRWLLVLIVAFILYRKLLRPQLLRKAALEKSTREAATSAARNST 515 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + ++D R + R+++ V Q R+ M E + A ++ Sbjct: 516 QQEGVSV---------KLSKDELDQERKSEHRMSAEVMSQ---RIREMSENDPRVVALVI 563 Query: 547 RKWARSEI 554 R+W + E+ Sbjct: 564 RQWMKDEL 571 >gi|189426353|ref|YP_001953530.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ] gi|189422612|gb|ACD97010.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ] Length = 530 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 125/561 (22%), Positives = 230/561 (40%), Gaps = 48/561 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + +L + L++ V+L ++ F N Y L+ L D I Sbjct: 3 EGLKRIVEPFMALAPGKRLLVGGVVLACLLSFALLIMLANRTDYRPLFTNLASEDAGEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L EA ++I+ +G I VP+ V + R+ LA++GLP G+E+FD+ N FG+T Sbjct: 63 KKLKEAKTPYQITPDGKGIMVPADKVYELRLSLASEGLPQGGG-VGFEIFDRKN-FGMTE 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182 F+Q++ RAL+GE+ARTI ISG+ ARVH+V+P+ F++ PTASV+++ Sbjct: 121 FVQKLNYQRALQGELARTITQISGVEQARVHLVIPEKTLFKEAEKPPTASVVLKMKGNKN 180 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----NEMERNILGKSLSIVQAI 237 + + HLV++++ ++ +VTVLDS GK+L+ + + Sbjct: 181 LRDNEVQGVVHLVSSSIEGMNADNVTVLDSRGKILSKGGNGMADASAKATSAMQETQRGY 240 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +E + L +G + V A + + E +DP++ RS + S++ Sbjct: 241 ERNVEERLQTLLDRVVGGGKSVARVSATFDFKQVERVEEKFDPETIAVRSEQRSEEKAGG 300 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 V+ N+ + K +E NYE++ + T L ++ Sbjct: 301 SAVST-GVPGVQTNLGRTAPGAGGAAGGG---SKNDETLNYEVSRSTSRTVEPVGTLSKV 356 Query: 358 SIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 S+A++V+ T G++ + L +I +V A G N RGD I+I ++ Sbjct: 357 SVAILVDGKYETGAPGKDGAAGKAKYVPRSPDELQKIEALVKGAVGFNQERGDQISIQNI 416 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + T + ++ F T+ L+ +G L + + + + Sbjct: 417 AFQDAGEAAGSTESAKWW--MNPFFLTLFKNLMIALGFLALMLFVVKPMLNTLRAARPAR 474 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ + SA R + L Sbjct: 475 PDILEAIVPDAQEKMSA---------------------------SERAQLAMHMAEQQEL 507 Query: 532 LHMIEINEERFAKILRKWARS 552 + + N + A+IL+ W Sbjct: 508 MEKAKTNPYQVAQILQNWLGE 528 >gi|46201261|ref|ZP_00055409.2| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 560 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 144/555 (25%), Positives = 256/555 (46%), Gaps = 7/555 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D + F + LG R+ +A V + + F+ V +P + LY L++ D +I Sbjct: 6 DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L+ I + + +G+ + VP R+ +A Q LP+ +GYELFDK ++ G TS Sbjct: 66 EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 125 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182 F Q IT VRALEGE+++TI+SI + AARVH+V+P +F + P+ASV+I+ Sbjct: 126 FQQNITMVRALEGELSKTIRSIDKVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGSQR 185 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240 AI+HL+AAAVP + ++++D G LL + + + + Sbjct: 186 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEDMKVKTEAK 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I L LG R+ V ++++ E +DP++KV RS + ++S+ + Sbjct: 246 LVKTIEDLLERSLGPGRVRAEVTVDMDLSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 305 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 +P + VTV+QN+P + R+ +K +E NYEI+ K+ +T + ++ ++S A Sbjct: 306 EP-TPVTVQQNLPDPNASSGGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 364 Query: 361 VVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V+V+ R G+ + + L++I +V +A G R D + + SM F + + Sbjct: 365 VIVDGVREQSADGKQTSYRDRTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 424 Query: 420 NSGTVQVSFMDILSRHF-ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 F+ + R F + + L V +L L L L + G+ Sbjct: 425 LQAEEPGEFIFGMRRDFVEKIASNLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGRR 484 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 +L+ + TG A +++ + ++ V S ++ ++E + Sbjct: 485 LLTTDGGAMPQLTGPSGAAMPAPLGGEEEVIADELIDIDKVEGRVKASSIRKIGEIVEKH 544 Query: 539 EERFAKILRKWARSE 553 E I+R W E Sbjct: 545 PEEALSIIRNWLYQE 559 >gi|300114783|ref|YP_003761358.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113] gi|299540720|gb|ADJ29037.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113] Length = 567 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 126/562 (22%), Positives = 243/562 (43%), Gaps = 33/562 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L + L + + L I + L + + +P Y +Y + + I Sbjct: 24 RLAALQANIGRLSLQKQVGLLLAIAASVALVVGVVMWALAPTYQVMYGAVTGEEKGEIVA 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI++R+++N +I VP+S V + R+ LA +GLP S +++G+EL ++ FG + F Sbjct: 84 ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPRS-ADTGFELLEQNPGFGASEF 142 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183 +++ RALEGE+ARTI +++ + ARVH+ +P F + P+ASV++ Sbjct: 143 LEKARYQRALEGELARTIGTLNNVRNARVHLALPKQSVFIRNRQAPSASVVLDLYAGRAL 202 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEI 241 AI HLV++++PNL+ VT++D G LLT + + + ++ + Sbjct: 203 DPGQVAAITHLVSSSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEYTRRLEEKY 262 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I LA +G D R+ VVAE++ + + Y+P+S RS ++S++ + Sbjct: 263 IRRIQHILAPMIGSDKARAQVVAEVDFTVTEQTQEYYNPESAALRSEQMSEEERTGSRF- 321 Query: 302 PESAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 P+ N P + ++ T + NYE++ + Sbjct: 322 PQGIPGALSNQPPAEAQAPEVVPEANDDEAPIEAVPTTRSQRATRNYELDRTISHSRLSP 381 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AV+V++ + + G + + LA++ +V A G N+ RGDTI + + Sbjct: 382 GSIRRLSVAVLVDEKAVADAEGTVSTVPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F+ S + F + ++ LL+ L R Sbjct: 442 PFVPANEEESFPEPSLWQ---QDWFWQAVKQGGGVLAILLLLLGVLRPAFRRLTALP--- 495 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ + P + + D ++L S+ + + + + + Sbjct: 496 ---ESVTLPAIPNKDEEKSDDGLQEDQLSLSSNKPTLRLAGPHSL--------EANLEIV 544 Query: 532 LHMIEINEERFAKILRKWARSE 553 M + R A++++ W S+ Sbjct: 545 RDMATGDSRRVAQVVKNWLVSD 566 >gi|167717602|ref|ZP_02400838.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98] Length = 476 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 126/472 (26%), Positives = 206/472 (43%), Gaps = 18/472 (3%) Query: 7 LLQFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L F + L R + L + I +A + +P Y LY L D I Sbjct: 6 LGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 AL +AN+ ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ Sbjct: 66 IAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGIS 123 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182 F +++ RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ Sbjct: 124 QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR 183 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 A+ +V+++VP++ +VT++D G LLT + L VQ I+ Sbjct: 184 VLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298 + I+ LA G N RS V A+++ + Y P+ ++S S+ S Sbjct: 244 QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELA 303 Query: 299 TSQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S N P + P + +D+K+ +NYE++ Sbjct: 304 QSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS 363 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS+AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + Sbjct: 364 MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVN 423 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 F + D++ V L ALRR Sbjct: 424 SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 475 >gi|77165822|ref|YP_344347.1| flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707] gi|254434642|ref|ZP_05048150.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27] gi|76884136|gb|ABA58817.1| Flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707] gi|207090975|gb|EDZ68246.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27] Length = 567 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 127/563 (22%), Positives = 245/563 (43%), Gaps = 33/563 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 +L + L + + L I + L + + +P Y +Y + + I Sbjct: 24 RLAALQANIGRLSLQKQVGLLLAIAASVALVVGIFMWSWAPTYQVMYGAVTGKEKGEIVA 83 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL +ANI++R+++N +I VP+S V + R+ LA +GLP S +++G+EL ++ FG + F Sbjct: 84 ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPRS-ADTGFELLEQNPGFGASEF 142 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183 +++ RALEGE+ARTI +++ + ARVH+ +P F + P+ASV++ Sbjct: 143 LEKARYQRALEGELARTIGALNNVRNARVHLALPKQSVFIRNRRAPSASVVLDLYAGRTL 202 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEI 241 AI HLVA+++PNL+ VT++D G LLT + + + ++ + Sbjct: 203 DPGQVAAITHLVASSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEHTRRLEEKY 262 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I LA +G + R+ VVAE++ + + Y+P S RS ++S++ +R+ + Sbjct: 263 ISRIQHILAPMIGSNKVRAQVVAEVDFTVTEQTQEYYNPGSAALRSEQMSEE-ERTGSRL 321 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSL----------ENTDKKEEQSNYEINTKSIATTHDN 351 P+ N P + T + NYE++ + Sbjct: 322 PQGIPGALSNQPPADAQAPETVPEANGDEAQIEPVPTTRSQRATRNYELDRTISHSRLSP 381 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AV+V++ +T+ G + + LA++ +V A G N+ RGDTI + + Sbjct: 382 GSIRRLSVAVLVDEKAVTDAEGAVSTLPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F+ + + F + ++ LL+ L R Sbjct: 442 PFVPANEEEAFPELSLWQ---QDWFWQAVKQGGGILAILLLLLGVLRPAFRRLTALPEP- 497 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ + P + + D ++L S+ + + + + + Sbjct: 498 -----VALSAIPNKDEEESDDGLQEDQLSLSSNKPTLQLSGPHSL--------EANLEIV 544 Query: 532 LHMIEINEERFAKILRKWARSEI 554 M + R A++++ W S++ Sbjct: 545 REMATGDSRRVAQVVKNWLVSDV 567 >gi|121602745|ref|YP_989390.1| flagellar MS-ring protein [Bartonella bacilliformis KC583] gi|120614922|gb|ABM45523.1| flagellar M-ring protein FliF [Bartonella bacilliformis KC583] Length = 553 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 207/556 (37%), Positives = 319/556 (57%), Gaps = 15/556 (2%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+ F S LG R++ L V + + + F++ P ++ LYV L Sbjct: 1 MLDKFFVFLSSSGSALYKLGAKRLIALGLVGVTLFGTILFSSFYLTRPSHETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNRI +AL EA I F +S +G S+ VP AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRIGMALGEAGIAFDVSSDGGSVQVPVGQAEHARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFR+ +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGVKAARVHIVLPDKGSFRRANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAI 237 +SA++IRHLVAAAVP+L+ VTV+D+ G++L + + S+ + Sbjct: 180 TDGGFSVESAQSIRHLVAAAVPSLEASSVTVMDTRGQMLASGVDAINGAPVVMASLEHQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V L+ D +QI E ++DP+S+V RSIR +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVALDTDRRQINETIFDPESQVVRSIRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + S+ AV VEQN+P S + D++EE +NYEIN+K I+T D Y +++L Sbjct: 300 QNSRNSDAVGVEQNIPQEEIANGSGETSTDKKDRREETTNYEINSKIISTVRDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +IA+VV++ RL G + + I+ + I ++VSAA G++ RGD I +T++DF+ + Sbjct: 360 AIAIVVDRARLVPANGETTVSEDFINDEVNRIQQMVSAAAGLDPNRGDIINVTAVDFIGH 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ +SR+ V+N + ++ LL+ FLG+ L R G Sbjct: 420 NDADLTPIETPLWKSVSRYIPGVVNGVALVIAVLLILFLGVRPLMREMR--------EGQ 471 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 K+ S + + ++ + + + + + + + RL MI+ Sbjct: 472 KARNSGENALAGLGAVPALDNQSQAAAGVGGVTKTNDDTLRDLRNRMRVPPQNRLEKMID 531 Query: 537 INEERFAKILRKWARS 552 ++EERFA ILR+W Sbjct: 532 MDEERFAGILREWVND 547 >gi|15887871|ref|NP_353552.1| flagellar MS-ring protein [Agrobacterium tumefaciens str. C58] gi|15155457|gb|AAK86337.1| flagellar M-ring protein [Agrobacterium tumefaciens str. C58] Length = 566 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 266/555 (47%), Positives = 380/555 (68%), Gaps = 7/555 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +L+Q+ Q K+ +LG+TR+L+L V ++ + + +AA +VN P Y+ LYV LE SD+ Sbjct: 7 MNLLNQIPQVLKNVAALGQTRLLMLGGVGVLSMAIILAAALYVNRPAYETLYVGLEKSDL 66 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 N+IS+AL+E+ +DF++ +GSS+ VP + KAR+ LA +GLP S+N+GYELFD V S Sbjct: 67 NKISIALAESGLDFQVGTDGSSLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 125 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEI R+IQ I G+ AARVHIV+PD+G+FR+ +PTASVMIRA Sbjct: 126 GLTSFMQEVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGEQKPTASVMIRAS 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239 + K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + + N +SL++ Q +Q Sbjct: 186 ASAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 245 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI+KALA FLG+DNFRS+V A++N D++Q++E VYDP+S+VERS+R K+ Q+S+ Sbjct: 246 EITTNIDKALAPFLGIDNFRSSVTAQINTDSRQVQETVYDPESRVERSVRTVKEDQKSQE 305 Query: 300 SQPESAVTVEQNM-PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 +QP++A TVEQN+ P+S + + KKEEQ+NYEIN+K++AT + Y LE++S Sbjct: 306 TQPDTAATVEQNVPQAAPQGGGGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTLEKIS 365 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A GI+S RGD +T+T+MDFLE QL Sbjct: 366 VAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVTSAAGISSDRGDIVTLTAMDFLETQL 425 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474 + M++LSR+ A +IN+L F+ LV +LG+ L R + + E Sbjct: 426 LDEAASGPGVMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTANGSAAAQLSQES 485 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + P A GLM + D + + N V + + RL M Sbjct: 486 AGLELPDFSPGMEAGAGGLMEGFGADFGFDSTDDLLAGGDGEGTFNRRVREGPERRLSRM 545 Query: 535 IEINEERFAKILRKW 549 +EI+EER AKILRKW Sbjct: 546 VEISEERAAKILRKW 560 >gi|116696304|ref|YP_841880.1| flagellar MS-ring protein [Ralstonia eutropha H16] gi|113530803|emb|CAJ97150.1| Flagellar M-ring protein [Ralstonia eutropha H16] Length = 576 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 117/563 (20%), Positives = 218/563 (38%), Gaps = 72/563 (12%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + SP Y LY L D + +L + N+ ++ ++ G ++ VP+ V + R+ L Sbjct: 39 VGVLWSRSPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRL 98 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A+QGLP S +G EL D FG++ F +++ R LEGE+AR+I+SI+ + +ARVH+ Sbjct: 99 ASQGLPKSG-TAGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLA 156 Query: 158 MPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 +P F + +PTAS++++ AI HLV+++VP L ++++D G Sbjct: 157 IPKPTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGN 216 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ ER + L VQA++ I L +G DN R+ V A+++ + + Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK------------- 319 Y P+ RS S+ S P N P + Sbjct: 277 ESYKPNQDPTRSAIRSQQTSESTQQGVTPPGGVPGALSNQPPAAAAAPVTTPQTPRAGQA 336 Query: 320 ----------------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 S ++++++ NYE++ Sbjct: 337 PGQAGAPAAGQPGQPGQAAQPGQGAQVANATASSGPSSNRRDSTVNYELDRSVRHVQQAP 396 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AVVVN + + G+ + + LA+I + A G ++ RGD+I + + Sbjct: 397 GGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSADRGDSINVVNS 456 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + V + + T+ L+ + L V F + R + Sbjct: 457 PFTAEREKAAPEVPLWKQPDMIELGKTLAGYLLLALLALFVWFKVARPVLRRYTSPPLPA 516 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E ++ P ++ + + + Sbjct: 517 PEPRDETEAVLLPPDEPANPEILRL------------------------AAKYESDLALV 552 Query: 532 LHMIEINEERFAKILRKWARSEI 554 + + A +++ W ++ Sbjct: 553 RDAAQRDPRLVASVIKNWIANDN 575 >gi|222053602|ref|YP_002535964.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32] gi|221562891|gb|ACM18863.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32] Length = 522 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 130/556 (23%), Positives = 237/556 (42%), Gaps = 51/556 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + SL ++ LI+A V ++ F A F N Y L+ L D I Sbjct: 3 EGLKKLLDPFLSLPTSKRLIVAGVAACSLLAFAALIFVANRTDYRPLFANLTTEDAGEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + + ++IS +G +I VPS V + R+ LA +GLP G+E+FD+ N FG+T Sbjct: 63 KKLKDQKVAYQISADGKAILVPSDKVYELRLSLAGEGLPQGGG-IGFEIFDRKN-FGMTE 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F+Q++ RAL+GE++RTI ++G+ ARVH+V+P+ F+ PTASV+++ + Sbjct: 121 FVQKLNYQRALQGELSRTIAQLAGVEQARVHLVIPEKSLFKDSEKPPTASVVLKMKSNRT 180 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQH 239 + + HLV++A+ +D +VTVLDS GK+L+ ++ + + + Sbjct: 181 LRENEVQGVVHLVSSAIEGMDTENVTVLDSRGKVLSRTGPSDATGKLTSTMQETQRNYEK 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +E + L +G + V A + + E YDP++ RS + S++ + Sbjct: 241 NLEERLQSLLDKVVGSGRSVARVSATFDFKQVEKYEEKYDPETAAVRSEQRSEEKAGATN 300 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 V+ NM R P + K +E NYE++ + L ++S+ Sbjct: 301 I-AAGVPGVQTNM----GRTAPGAGTTGGGSKSDETLNYEVSRTTARIIEPVGSLTKVSV 355 Query: 360 AVVVNKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 A++V+ ++ Q + L +I +V ++ G N+ RGD +T+ ++ F Sbjct: 356 AILVDGKYEAPAAAKAGAAKAKYQPRTPDELQKIESLVKSSVGFNAERGDQVTVANIPFQ 415 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 E S I T++ L+ G + F + L R+ Sbjct: 416 ETGDMGSAEDAWWNAPI----VMTLLKNLLIAGGFFAIIFFVIKPLMRMLPHRPP----- 466 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + +D+ N + + + L L+ Sbjct: 467 -------------------------SFQPVQEDLEMIQLNEAHKQELALQTLNQLELIEK 501 Query: 535 IEINEERFAKILRKWA 550 ++ + + A+IL+ W Sbjct: 502 VKQDPYQVAQILQNWL 517 >gi|258592505|emb|CBE68814.1| Flagellar basal body M-ring protein [NC10 bacterium 'Dutch sediment'] Length = 539 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 126/549 (22%), Positives = 226/549 (41%), Gaps = 34/549 (6%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F + LG T + V + + F + P L+ +L SD I L Sbjct: 12 FKQVWGGLGLTGRALTVLVGGGALTALLWMVFSTHRPDMTTLFSQLNPSDAGAIVDELKS 71 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + +R+ D G+ I VPS++V + R+HLA +GLP G+E+FD+ G T F+Q + Sbjct: 72 GKVSYRVVDGGTRILVPSAVVHEIRLHLATRGLPQGGG-VGFEIFDRTT-LGTTDFVQRL 129 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187 RAL+GE+ARTI + + AARVH+ +P F + TASV+ +R + Sbjct: 130 NYQRALQGELARTIGQLKEVTAARVHLALPQPSVFTEQEKPATASVVLNLRPGARLTPEQ 189 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHEIEMNI 245 I HLV+++V L+ +TV+D++GKL+ R G +A++ E+E + Sbjct: 190 VRGIVHLVSSSVEGLNADRITVVDTSGKLIARPAEGRLGAGSTGQFEAQEAVEGELERRV 249 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 L LG + V A+++ + + E +DP V +S + + + Q+S T+ P + Sbjct: 250 RTMLEEILGPNKATVRVAAQMDFTSVERTEERFDPRG-VIKSEQRTTETQQSVTASPAAV 308 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V N+P + +S + K+ E Y+++ +L+R+S+AV+V+ Sbjct: 309 AGVASNVPDQTATPSQSGQSTAKSTKEAETVQYDVSKVLERKVFSPGELKRVSVAVMVDG 368 Query: 366 GRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 G+ + L +I V A G ++ RGD + + F + Sbjct: 369 TYKPVPDGKGGERKEYVPRKSDELEKIKVAVKNAVGFSAARGDEVEVVEFPFDTSATEKE 428 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + +++ ++ VG LLV GL L R + G Sbjct: 429 RALMEEAERKAFWY--SLVKPVLMGVGVLLVLVFGLRPLIRSLKERRLPTFDTPGM---- 482 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 +++ + ++ L+ + N Sbjct: 483 -----------------LSMSQPGPTAIETGPDQAPALDVASDDPLRTGLMELARNNPNV 525 Query: 542 FAKILRKWA 550 A+++R W Sbjct: 526 VAQLVRAWM 534 >gi|238758092|ref|ZP_04619272.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236] gi|238703630|gb|EEP96167.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236] Length = 569 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 127/583 (21%), Positives = 235/583 (40%), Gaps = 58/583 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + T L + L + + +A + SP Y LY L D I Sbjct: 10 NRENTFTATLTRLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ VP+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLVPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F ++I RALEGE++RTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVMNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D G+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQMGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ ++ + Y P+ + S+ SE Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFANREQTDEEYKPNQDANQGAVRSQQVSTSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSD----------------------------RKVPLPRSLENTD 330 N P ++ + + Sbjct: 308 GTNVGGVPGALSNQPPIAPVAPIEAPQAAPAAGATANTANTANRPATTTAAKSSATSSNS 367 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + ++ +N+E+N T ++RLS+AVVVN G LA++ Sbjct: 368 RHDQTTNFEVNRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPIALTKDQLAQVES 423 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 + A G ++ RGDT+ + + F + ++ ++NA +L+ L Sbjct: 424 LTREAMGFSTTRGDTLNVVNTPFSASDDTGGHSLPFWQQPSFFDQ---LLNAGRYLLILL 480 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 + L +R + + S+ + ++A T + +AL NQ S Sbjct: 481 VAWILWRKLVRPMIAKKQV--ADNAAASVNNIVQTAAASETAKQSKEELALRKKNQQKVS 538 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R+ + + + A ++R+W ++ Sbjct: 539 A-------------EVQAQRIRELADKDPRVVALVIRQWMSND 568 >gi|152997451|ref|YP_001342286.1| flagellar MS-ring protein [Marinomonas sp. MWYL1] gi|150838375|gb|ABR72351.1| flagellar M-ring protein FliF [Marinomonas sp. MWYL1] Length = 558 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 119/561 (21%), Positives = 222/561 (39%), Gaps = 35/561 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L+ L R L L + I + +AA + N P Y + + + ++I L Sbjct: 15 LELVTGFNKLTVIRQLALMVGLAASIAIGLAAVLWSNGPDYKPVLSSITDYNADQIVEIL 74 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 S NI F++ N ++ V S +AR+ LA G+ S + G E+ D+ G + F++ Sbjct: 75 SVNNIPFKLDQNTGALLVESDFYHQARLKLAGSGIV-SDNIVGMEIMDQEQGLGTSQFVE 133 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 R LEGE++RTI S+ I +ARVH+ +P F + +P+ASV + Sbjct: 134 TTRYRRGLEGELSRTIASLQSIKSARVHLAIPKESVFVRDTRKPSASVFLELYPGRRLDK 193 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 EAI +LVA+++ L DVTV+D G LLT + + + GK + ++ + Sbjct: 194 SQVEAIVNLVASSISQLSDKDVTVVDQRGTLLTEKDSDSELSVAGKQFDYARKVEEVLLQ 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 +N L +G F++ V A+++ + Y+PD RS + ++ RS + Sbjct: 254 RVNNILGPVIGQGRFKAEVSADVDFTAVEKTNEQYNPDLLALRSEQTLRE-NRSAGTSAS 312 Query: 304 SAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 N P + + ++E N+E++ T Sbjct: 313 GIPGALTNQPPGAVTIPEAVDENGAPIGGNTSAKNGQSREETTRNFELDRSISYTKRQQG 372 Query: 353 KLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AVVV+ + D L + +V A G + RGD++++ + Sbjct: 373 MVRRLSVAVVVDDLMSLNPDTSAIVRTPWNDDELGRLTLLVRDAVGYDPSRGDSVSVINS 432 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F L + + F +I + + L++ + + + + Sbjct: 433 PF---ALPDPEEPAIELPFYQQAWFLGLIQPTLVGIFVLILLLVVVRPILKTL------S 483 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + + T + +D ++L S+ + S R + Sbjct: 484 EQNKIAVTEDTEAAIFSDETDEISDDQVSLVSAEDILVPGSPEKIDR--------QLNAI 535 Query: 532 LHMIEINEERFAKILRKWARS 552 +I ER A+++++W Sbjct: 536 RGLIAEEPERVAQVVKQWVME 556 >gi|119476321|ref|ZP_01616672.1| flagellar M-ring protein FliF [marine gamma proteobacterium HTCC2143] gi|119450185|gb|EAW31420.1| flagellar M-ring protein FliF [marine gamma proteobacterium HTCC2143] Length = 562 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 118/556 (21%), Positives = 223/556 (40%), Gaps = 28/556 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F ++G R L L + + + A + Y LY L+ D + L Sbjct: 18 NDFLNGLGNIGILRQLFLMVGLAASVAMGGAIVLWSVGEEYRPLYSSLDHMDPGEVLNIL 77 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ID ++ +N ++ V + + AR+ LA G+ S G+E+ DK G + FM+ Sbjct: 78 QSSQIDHKVDENTGALLVAADQIHDARLKLAGAGISPDGS-FGFEMLDKEQPLGTSQFME 136 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ RTI SI + ARVH+ +P +F + +PTASV + + Sbjct: 137 SARFKRGLEGELGRTIASIQAVRGARVHLAIPKTSAFIRDVRKPTASVFLDLYGGSGINT 196 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243 + AI ++VA ++P L + +VTV+D G LL+ + + + K L V+ ++ + Sbjct: 197 EQVRAIANMVAFSIPELTIQNVTVVDQRGNLLSNFDADQDMAMAHKQLDYVREMEGRLVK 256 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG NFR+ + A ++ + + +++PD RS + ++ + Sbjct: 257 RVSSILEPVLGEGNFRAEISANVDFTQVEQTDELFNPDLPAIRSEQTVEEGRGGGGVGGV 316 Query: 304 SAVTVEQNMPHVSDRKVPLP--------RSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + +T +++ NYE++ T H +L Sbjct: 317 PG--ALSNQPPRDGQAPEQIVDGGAAALAESVSTSRRQSVRNYELDRTISHTRHQVGRLR 374 Query: 356 RLSIAVVVNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS+AV+V+ + G S L ++ +V A G ++ RGD++ I + F Sbjct: 375 RLSVAVLVDNTTNIDSETGEIVSVAIEQSELDQLAILVRDAVGFDAARGDSVNIINSAF- 433 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 V ++ T+ + + +L+ L +R E+ Sbjct: 434 ---AVKEAPEVVPMEEVPIWQQPTIERYIKYAGAFVLIMMLLFFVMRPAFRNLTDGSKEL 490 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 S + ++ + L + S + +Q + + Sbjct: 491 RELEAQRALGDLSGDLGSGLADETVTLSGGESLLLSGP--------NKNYEQQLSTVRGL 542 Query: 535 IEINEERFAKILRKWA 550 I + R A++++KW Sbjct: 543 IAEDPGRVAQVVKKWV 558 >gi|253702508|ref|YP_003023697.1| flagellar M-ring protein FliF [Geobacter sp. M21] gi|251777358|gb|ACT19939.1| flagellar M-ring protein FliF [Geobacter sp. M21] Length = 522 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 126/556 (22%), Positives = 237/556 (42%), Gaps = 48/556 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + +L + L++ V L ++ F A N Y L+ L D I Sbjct: 3 EGLKKLLEPFLALSSAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E + ++IS +G +I VPS V R+ LA+ GLP G+E+FD+ N FG+T Sbjct: 63 KKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-IGFEIFDRKN-FGMTE 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F+Q++ RAL+GE+ RTI I+G+ +ARVH+ +P+ F++ TASV+I+ + Sbjct: 121 FVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFQEQEKPATASVVIKMKSNRQ 180 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239 + + + HLVA+++ +D VTVLD+ GK+L+++ + + G +A + Sbjct: 181 LREGEVQGVVHLVASSIEGMDPEQVTVLDTRGKVLSSHSSNDPTSKLAGARQDTQRAFEK 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + L +G + V A + + E YDP+S RS + S++ + Sbjct: 241 TEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEEK-GGIS 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + A V+ NM R + K +E NYE++ + L ++S+ Sbjct: 300 TTASGAPGVQTNM----GRAQGAAGTTGGGSKTDETLNYEVSRSTARIVEPVGSLSKVSV 355 Query: 360 AVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 A++V+ + Q + + +I +V +A G N+ RGD +T+ ++ F + Sbjct: 356 AILVDGKYELAPGAKPDAAPKYQPRSPDEMQKIEALVKSAVGFNAERGDQVTVANIPFQD 415 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ T+I + + L + F + L +L I+ + Sbjct: 416 TGDQVGEPPAWYDAPVVQ----TLIKNGLIGLAFLALLFYVIRPLMKLLKIEKPAHHFLP 471 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + ++ + + L L+ + Sbjct: 472 IQDDAEQAQLLEM----------------------------QKVEHEKMRITQLELVEKV 503 Query: 536 EINEERFAKILRKWAR 551 + + + A+IL+ W Sbjct: 504 KQDPYQAAQILQNWLT 519 >gi|205352337|ref|YP_002226138.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272118|emb|CAR36971.1| flagellar basal-body M-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627387|gb|EGE33730.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 558 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 126/572 (22%), Positives = 225/572 (39%), Gaps = 54/572 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELR--LAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 129 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 130 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 189 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 190 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 249 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ + E Y P+ ++ S+ SE P Sbjct: 250 ILSPIVGNGNVHAQVTAQLDFANKDQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 309 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 310 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 369 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 370 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 425 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+R Sbjct: 426 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 481 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 482 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 529 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 Q R+ M + + A ++R+W ++ E Sbjct: 530 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 558 >gi|91978309|ref|YP_570968.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB5] gi|91684765|gb|ABE41067.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB5] Length = 532 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 139/551 (25%), Positives = 232/551 (42%), Gaps = 26/551 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LG R++ + +V + + F V+ P LY L V D + I Sbjct: 1 MQSLLGFLKGLGAARVMAMIAVTVALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + + G+++ VP V + R+ LA GYE+FDK ++ G TSF+ Sbjct: 61 LERQAIPFEMRNEGTTLMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+ARTI++I I ARVH+V+P+ F + P+AS+++R + Sbjct: 120 QNINHLRALEGELARTIRAIDRIQQARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244 AIRHLVA+AV L V+++D G+LL + + + Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRMRNE 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +++ +G R V A+ + + +DP+ +V RS + ++ +S+TS + Sbjct: 240 IEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QSQTSAADG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VTV +P + PR + + K EE +NYEI+ + + ++ RLS+AV+V+ Sbjct: 298 QVTVNNELPGNQGQAGTGPR--DQSKKSEETNNYEISRITKTEVTEAGRVNRLSVAVLVD 355 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G + L I +V +A G + +RGD I + ++ F E Sbjct: 356 GIYTKNEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPE 415 Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 Q +I V LV L+V F+ + L + D G ++ Sbjct: 416 QAGLLGMFQFTKDDIMNMIQLGVMLVLGLVVLFMVIRPLVKRVLASDPGPEGPGLPALT- 474 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 D S +++ V QS R+ + + N Sbjct: 475 ---------------DGSVPQIGADGQPQPSMIDIAQVQGQVHAQSVHRVGELADRNPNE 519 Query: 542 FAKILRKWARS 552 A I+R+W Sbjct: 520 TAAIVRQWLAE 530 >gi|268589960|ref|ZP_06124181.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131] gi|291314677|gb|EFE55130.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131] Length = 561 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 115/533 (21%), Positives = 222/533 (41%), Gaps = 36/533 (6%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 ++ SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA Sbjct: 44 LLLWLRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ + Sbjct: 104 QSGLPK-GGNTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + PTASV + AI H+V+++V L +V ++D G+L Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTASNVIIVDQAGRL 221 Query: 217 LTANEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT N+ + + + + ++ ++ I L+ +G N + V A+++ + Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMESHLKQRIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281 Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSD-------------RK 319 Y P+ + + S+ +S N P + + Sbjct: 282 EEYKPNQTPDSAAIRSRQNSQSMQNNNGGTGGVPGALSNQPVSAPSAPIETNKDNKDGAQ 341 Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 R+ + + +E +NYE++ K T ++RLS+AV+VN G + Sbjct: 342 TANNRNSVSNSQSDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYHSQDGENG-PEMKP 400 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 L +I + A G ++ RGD++ IT+ F + + + + A + Sbjct: 401 LPPEMLQQIEALTREAMGFSTARGDSLNITNSLFTN----EAPVEEAPSLLESPQFIAQL 456 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 ++ L+ ++ F+ ++ + + + + + ++ + Sbjct: 457 LDYGKILLIAIIAWFMWRFGIKPQWVKYRKAQQAQAEAEVFVATQLKTPLVVDEAIDEEM 516 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + R+ M E + + A ++R+W Sbjct: 517 DEQTRRRLTRQRVSAEIQS----------QRIREMAEKDPQIVAMVIRQWLGK 559 >gi|30250023|ref|NP_842093.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea ATCC 19718] gi|30139130|emb|CAD85994.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea ATCC 19718] Length = 548 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 118/566 (20%), Positives = 214/566 (37%), Gaps = 46/566 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + L L I L + SP Y LY L + I Sbjct: 12 KKTFSQLDKIKQLPTQKKLGLMVAAAAVIALIAGTWLWSQSPDYRVLYASLSDQEGGAII 71 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + N+ ++ S++G SI +P+S V + R+ LA QGLP + SG+E+ + FG + Sbjct: 72 EALQKMNVPYQFSESGGSILIPASQVHEVRLRLAGQGLPK-GNLSGFEIL-ENQKFGSSQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182 F++++ RALEGE++R+IQS+S + ARVH+ + F + +P SV++ Sbjct: 130 FLEQVNYQRALEGELSRSIQSLSAVQGARVHLAIAKPSVFTRERPQPRVSVLLNLHPGRM 189 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239 + AI HL+++++P++ + +VTV+D G LL+ + E + L VQ ++ Sbjct: 190 LSTEQVSAIVHLISSSIPDMPVKNVTVVDQQGNLLSGQKDNQAETGLDPGQLKYVQDMEQ 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS---IRLSKDAQR 296 I L G DN + V A+++ + E +Y P++ + + Sbjct: 250 NFVRRIEAILTPITGEDNVHAQVTADVDFSRIERAEEIYKPNNNPAEAAAVRSQQQSESV 309 Query: 297 SETSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348 S + N P ++ ++E +NYE++ T Sbjct: 310 SISQPEGGVPGALSNRPPAPAEAPIEAKQSSEAAAKTTPTDTRRESTTNYEVDKTISHTR 369 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++ RLS AVV+N + G A++ + +I +V G + RGDT+T+ Sbjct: 370 QATGRINRLSAAVVINYRTKLDTEGNPANEPLSGEEIEKITALVKQTIGFDETRGDTLTV 429 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 T+ F D + L+ +V F R Sbjct: 430 TNSQFNLKGDSLEELPPWKDPDT----VLLAKDIGKQLLIAAIVLFFLQKIFRPFLR--- 482 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 P + ++ HS S + +++ Sbjct: 483 ---------------------NLLPPPPPPPVPALAVKNGLEHSEAEVSTVRVVTLEENL 521 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 + + A +++ W Sbjct: 522 EKARLLAVTEPAIVANVVKGWVSGNE 547 >gi|197104328|ref|YP_002129705.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1] gi|196477748|gb|ACG77276.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1] Length = 548 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 131/551 (23%), Positives = 230/551 (41%), Gaps = 10/551 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + G R+ + + + A + P LY L++ + I+ A Sbjct: 1 MNQLLAAIQRFGIGRLAAILGIGAGLAAVLFAMTMGLGEPK-ALLYSNLDLKEAGSITQA 59 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A I + + +GS+I V V R+ L+++GLP++ S GYE+FD + G T F+ Sbjct: 60 LDQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGS-VGYEIFDDAKALGQTDFV 118 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185 Q++ R RALEGE+ARTI+S+ GI +ARVH+V+P F++ +P+ASV I + Sbjct: 119 QQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQPSASVNIGVGGRAPSP 178 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 + AI++L+A AVPNL VTV+D K L+ + + ++ S ++ I + Sbjct: 179 EQVRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDTG--MAAEADSRKSEVEQRIAKQV 236 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + +G R V AEL + +++ +DPD +V RS + + R Sbjct: 237 KNLIEGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDGAGQ 296 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V N+P + + ++E +NYEI+ + +++RLS+AV V+ Sbjct: 297 AGVAGNLPGAAALGGGGLVGS-QSGRQESTTNYEISKTVRTEVQEPGQVKRLSVAVAVDG 355 Query: 366 GRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G+ A + + I ++V A G N RGD +++ ++ F Sbjct: 356 VTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVINVRFPTPDTVGGVEA 415 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 M + V + +L+ L + + Sbjct: 416 ANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLKSATGGGGGGLPMMMGGPQVTRV 475 Query: 485 ISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 +++A + S+ +RI V S R+ +E + E Sbjct: 476 VTTADGQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEFVEKHPEE 535 Query: 542 FAKILRKWARS 552 ILR W Sbjct: 536 SVAILRSWLHE 546 >gi|319944162|ref|ZP_08018438.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC 51599] gi|319742457|gb|EFV94868.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC 51599] Length = 574 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 110/561 (19%), Positives = 219/561 (39%), Gaps = 40/561 (7%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + + + ++ + ++A + P + LY L + + L + N+ Sbjct: 23 FAQMPAATKIKAGAGVIALGAVAVSAWLWSQQPDWKVLYNNLPDREGGAVIAQLVQMNVP 82 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++ ++ G +I VP++MV AR+ LAAQGLP+S +GYEL +K FG T F + + R Sbjct: 83 YKYTEGGGAIMVPANMVNDARLRLAAQGLPASD-TTGYELLEK-QRFGTTQFQERLNFQR 140 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191 LEGE+AR+IQS++ + ARVH+ MP F + +P+ASVM+ + + I Sbjct: 141 GLEGELARSIQSLAAVKQARVHLAMPVQSGFLREQQKPSASVMLTLYPGRTLERGQVQGI 200 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALA 250 LVA++VP++ V+V+D GKLL+ + + ++ I+ + I+ LA Sbjct: 201 LALVASSVPDMSPKQVSVVDQYGKLLSDLDGDGSEMNTAQINYRNRIESTLTRRIDDLLA 260 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ-----RSETSQPESA 305 +G N R+ V A+++ + Y P+ + S+ + Sbjct: 261 PIVGDGNIRAQVAADIDFTQSEATAETYAPNQNPGAAAMRSQQTMASRDGSGASDAAGGV 320 Query: 306 VTVEQNMPHVS---------------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 N P + + ++E +NYE++ T + Sbjct: 321 PGALSNQPPATVSAPINGAAQATRAAGSASSADGGTGVSTRQESVTNYEVDRTVKVTRNQ 380 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + RLS+AV+VN+ + G+ + I +V A G ++ RGD++ + + Sbjct: 381 TGTIRRLSVAVLVNQKQTKGDDGKEVSTPLTPLEMQSIEALVKQAVGFSAERGDSVQVVN 440 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F + V + + F++ L++ + + + Sbjct: 441 AAFTKRPEVVDPEVPLWKDPETVSLAKDLGKQFGFVLLALIILMMFIRPALQAMKKPAPA 500 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G + + S + + ++ + +++ Sbjct: 501 AGNNLDAKVDEQLELPSPEGSTKGGVQRLEVNPEQGMGMTIAQHNAL------------- 547 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + A ++R W Sbjct: 548 --QLARTDPTAVATVVRNWVN 566 >gi|167835057|ref|ZP_02461940.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43] Length = 486 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 116/442 (26%), Positives = 194/442 (43%), Gaps = 15/442 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 46 WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++SI+ + AARVH+ +P Sbjct: 106 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 163 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ A+ +V+++VP++ +VT++D G LLT Sbjct: 164 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 223 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N R+ V A+++ + Y Sbjct: 224 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARAQVSADVDFSKIEQTSESYG 283 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ + S N P + P + Sbjct: 284 PNGTPQQSAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 343 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN + GR Q LA++ Sbjct: 344 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLAADKLAQV 403 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 404 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 463 Query: 449 TLLVTFLGLHALRRLHNIDDAK 470 L ALRR Sbjct: 464 AALYFMFVRPALRRAFPPPAQP 485 >gi|156933442|ref|YP_001437358.1| flagellar MS-ring protein [Cronobacter sakazakii ATCC BAA-894] gi|156531696|gb|ABU76522.1| hypothetical protein ESA_01260 [Cronobacter sakazakii ATCC BAA-894] Length = 565 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 132/576 (22%), Positives = 231/576 (40%), Gaps = 57/576 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + P Y LY L D I L++ Sbjct: 15 VEWLNRLRANPKIPLMVAGAAAVAIIVALVLWAKQPEYRVLYSNLSDQDGGAIVTQLTQM 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI + +DNG+SI VP+ V R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 75 NIPYNFADNGASIMVPAEKVYDLRLRLAQQGLPKGGA-VGFELMDQE-KFGISQFSEQVN 132 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 RALEGE+ARTI+++ + ARVH+ MP F + P+ASV ++ Sbjct: 133 YQRALEGELARTIETLGPVKNARVHLAMPKPSLFVREQKSPSASVTLNLQPGRALDDGQV 192 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247 AI H+V++AV L G+VT++D TG+LLT + + L ++ I+ I Sbjct: 193 AAIVHMVSSAVAGLPPGNVTLVDQTGRLLTQSGTGARDLNDAQLKYASDVEGRIQRRIES 252 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 LA +G N + V A+++ ++ E Y P+S + S+ ++ P Sbjct: 253 ILAPIVGTGNVHAQVTAQIDFSNKEQTEEQYRPNSDPSQMAVRSRQLNTNDQVGGAYPGG 312 Query: 305 AVTVEQNMPHV--------------------------SDRKVPLPRSLENTDKKEEQSNY 338 N P S ++ +++E +NY Sbjct: 313 VPGALSNQPAPANSAPIDAPAGQNNGQNANGQNAQRTQSTSTAGASSGPHSSQRDETTNY 372 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN +L G L +I + A G Sbjct: 373 EVDRTIRHTKMNVGDVQRLSVAVVVNYRQL----GNGKPLALTAEQLKQIEDLTREAMGY 428 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGDT+ + + F + +++A +LV ++ L Sbjct: 429 SDKRGDTLNVVNSQFTASDESGGELP----FWKQQAFIDQLLSAGRWLVVLIVAWLLWRK 484 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R + V + ++D + R R Sbjct: 485 AVRPQLQRRAEEVKRVQEMQQQRK------------EVEESVEVRLSKDEQTQQRRANQR 532 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 +++ V Q R+ M + + A ++R+W +E+ Sbjct: 533 LSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNEL 565 >gi|167892353|ref|ZP_02479755.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894] Length = 495 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 202/469 (43%), Gaps = 15/469 (3%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + L + I +A + +P Y LY L D I AL +AN+ Sbjct: 29 GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 88 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ F +++ Sbjct: 89 PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 146 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190 RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ A Sbjct: 147 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 206 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 + +V+++VP++ +VT++D G LLT + L VQ I+ + I+ LA Sbjct: 207 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 266 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307 G N RS V A+++ + Y P+ ++S S+ S S Sbjct: 267 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 326 Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + P + +D+K+ +NYE++ ++RLS+ Sbjct: 327 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 386 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + F Sbjct: 387 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 446 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + D++ V L ALRR Sbjct: 447 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPA 495 >gi|240137205|ref|YP_002961674.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1] gi|240007171|gb|ACS38397.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1] Length = 559 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 190/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G +L A + GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 P +A T + AL S + S L + +++ RL +I Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPSPGVAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|220925883|ref|YP_002501185.1| flagellar MS-ring protein [Methylobacterium nodulans ORS 2060] gi|219950490|gb|ACL60882.1| flagellar M-ring protein FliF [Methylobacterium nodulans ORS 2060] Length = 541 Score = 356 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 134/551 (24%), Positives = 242/551 (43%), Gaps = 16/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + G R+ + +V L + F V+ P LY L + D + + Sbjct: 1 MKPVLDLVAKFGPARLAAMGAVTLTLVGFFAFVILRVSRPEMGVLYADLSMQDASAVIRD 60 Query: 67 LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L + + G +I P + + + R+ LA +GLPS+ GYE+FDK ++F T+F Sbjct: 61 LDARGLRYETRGEMGQTILAPRADLARLRMDLAGKGLPSAGG-VGYEIFDKGDAFSSTTF 119 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + +RALEGE+AR+I++I + AAR+H+V+P+ F + P+A+++++ Sbjct: 120 VQNVNHLRALEGELARSIRAIGRVQAARIHLVIPEKRLFARDREPPSAAIVLKLSGDLDP 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHEIEM 243 A+RHLVA++V L ++++D G+LL + G+ ++H + Sbjct: 180 GQVRAVRHLVASSVEGLKPDRISIVDERGRLLADGAKPEDAQGRLGLDERQANLEHRLRA 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +A +G R V AEL+ + + R +DP+S+V RS + + Q+S+ Sbjct: 240 QVEGIVAGIVGSGRARVQVAAELDANRIESRSETFDPESRVVRSTQTRSETQQSQGPGET 299 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N + + E ++K EE +NYEI+ + ++ ++ RLS+AVV+ Sbjct: 300 GV--SVGNELPGARDPAQQNGTREASNKNEETTNYEISRVTRTEINEGGRIRRLSVAVVI 357 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + GR + L I +V A G + RGD I + ++ F E + Sbjct: 358 DGTYTPGPDGRPVYAPRPQDELDRITALVRTAVGYDKARGDQIEVVNLRFAEGPVPAEIP 417 Query: 424 VQ--VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + ++ + V + TL+V + L R DA E+ I Sbjct: 418 EEGLLASFKPTKEDVLRLAELGVLALLTLVVVLAVVRPLLRRVIAVDAPPAELVAAGIPV 477 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P G +P A D+ D + +RIN + ++ R+ ++ N Sbjct: 478 LP--------GALPGAAPAEDAPPPDSPAKHLVDFARINGKLQAETIERVADIVRQNPAE 529 Query: 542 FAKILRKWARS 552 A++LR W Sbjct: 530 TAEVLRNWIND 540 >gi|306841269|ref|ZP_07473980.1| flagellar M-ring protein FliF [Brucella sp. BO2] gi|306288671|gb|EFM60002.1| flagellar M-ring protein FliF [Brucella sp. BO2] Length = 542 Score = 356 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 203/531 (38%), Positives = 307/531 (57%), Gaps = 4/531 (0%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91 + + ++ P Y+ LYV L DVNR+ +AL EA I F + +GSSI VP Sbjct: 1 MMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAE 60 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALEGEIARTIQ+I G+ A Sbjct: 61 NARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKA 119 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211 ARVHIV+ + GSFR+ +P+ASV+IRA +SA++IR LVAAAVP+LD VTVLD Sbjct: 120 ARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVAAAVPSLDASSVTVLD 179 Query: 212 STGKLLTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 + G LL + N + S+ Q + ++ +I KALA +LG+ +F+++V A L+ D Sbjct: 180 TNGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGLGHFQTSVQAALDTDR 239 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 +Q +E YDP+S+VERS+R+ +++ S ++ ++A VEQN+P + S E TD Sbjct: 240 RQTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQEQIQNRNGESSTEKTD 299 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG-KIDSYLAEIN 389 ++EE +NYE+N+K+++T D Y ++RLSIAVV+++ RL + G + +D + +I Sbjct: 300 RREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTPPPANFVDQQITKIR 359 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 +V+ A G+N+ RGD I +T+++FL+ + V + D L R + NAL L Sbjct: 360 DLVATAAGLNANRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYANALAILAAV 419 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L+ + GL L R N+ A ++ P + + Sbjct: 420 GLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGSAESVGEGAQAVIGGPA-AYA 478 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + S + + + LRL MIE++EER A +L++W R Sbjct: 479 DQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGREAD 529 >gi|163850071|ref|YP_001638114.1| flagellar MS-ring protein [Methylobacterium extorquens PA1] gi|163661676|gb|ABY29043.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1] Length = 559 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G +L A + GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 P +A T + AL S + + L + +++ RL +I Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGIAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|167917106|ref|ZP_02504197.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215] Length = 490 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 202/463 (43%), Gaps = 15/463 (3%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + L + I +A + +P Y LY L D I AL +AN+ Sbjct: 27 GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 86 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ F +++ Sbjct: 87 PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 144 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190 RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ A Sbjct: 145 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 204 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 + +V+++VP++ +VT++D G LLT + L VQ I+ + I+ LA Sbjct: 205 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 264 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307 G N RS V A+++ + Y P+ ++S S+ S S Sbjct: 265 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 324 Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + P + +D+K+ +NYE++ ++RLS+ Sbjct: 325 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 384 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + F Sbjct: 385 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 444 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + D++ V L ALRR Sbjct: 445 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 487 >gi|167822258|ref|ZP_02453729.1| flagellar MS-ring protein [Burkholderia pseudomallei 9] Length = 488 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 202/463 (43%), Gaps = 15/463 (3%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + L + I +A + +P Y LY L D I AL +AN+ Sbjct: 25 GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 84 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ F +++ Sbjct: 85 PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 142 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190 RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ A Sbjct: 143 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 202 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 + +V+++VP++ +VT++D G LLT + L VQ I+ + I+ LA Sbjct: 203 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 262 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307 G N RS V A+++ + Y P+ ++S S+ S S Sbjct: 263 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 322 Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + P + +D+K+ +NYE++ ++RLS+ Sbjct: 323 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 382 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + F Sbjct: 383 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 442 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + D++ V L ALRR Sbjct: 443 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 485 >gi|218528674|ref|YP_002419490.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4] gi|218520977|gb|ACK81562.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum CM4] Length = 559 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G +L A + GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 P +A T + AL S + + L + +++ RL +I Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|260222430|emb|CBA31986.1| hypothetical protein Csp_D29860 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 579 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 125/564 (22%), Positives = 225/564 (39%), Gaps = 37/564 (6%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + T+L + + + LA I + + + + + LY L D + L+ Sbjct: 30 LGQRLTALDQGQRIRLALGIALFVAIAVVGLVMGRQAEWRVLYSNLADKDGGAVIAQLTT 89 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ ++ G +I VP+ V R+ LA+QGLP S SG+E+ + N FG+T F + + Sbjct: 90 MNVPYKYTEGGGAILVPADRVHDVRLKLASQGLPK-GSVSGFEMM-EANRFGMTQFQERL 147 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187 T R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 148 TFQRGLEGELTRSIQALSSVSSARVHLALPNQNGFFREQQKPSASVLLSLHPGRALDKGQ 207 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNIN 246 I HLVA++VP ++ V+VLD TGKLL+A + + + L VQ I+ I Sbjct: 208 LAGIVHLVASSVPEMNPSAVSVLDDTGKLLSANPDAAAGVDAEQLQYVQQIEQLYSRRIL 267 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSETSQP 302 L +G N ++ V AEL+ + + P+ RS +L + ++ + P Sbjct: 268 DMLEPLVGKQNVKAQVTAELDFSQTESTTESHKPNQTPDSGAVRSQQLVESTNGTQPTPP 327 Query: 303 ESAVTVEQNMPHVSDRKVPLPR-------------SLENTDKKEEQSNYEINTKSIATTH 349 N P + S ++ KKE NYE++ T Sbjct: 328 AGVPGATTNQPPAQPAAPINGQPQTLAANGQTAAGSTNSSSKKESIINYEVDKTIRVTKG 387 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R++ AVV+N +T+ G + ++ L ++ +V G N RGD++ + Sbjct: 388 AVGAIKRINAAVVLNNQSVTDAKGVTTSVALTEAQLEKMTALVRETVGFNQDRGDSVNVV 447 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + V + ++ L L LV + + Sbjct: 448 NAPF-APEKAEVNDTPVWRQPEVQELARSLAWPLGTLGLAALVLLGVIRPAMKALTQP-- 504 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 P + D I D + + + + + Sbjct: 505 ------------APVAEPLENNDVAQLDAIENDQPERPQLTGPSSANEAQQASPGELRLE 552 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + N A I++ W E Sbjct: 553 DARKLTRDNPAAVANIVKAWMNGE 576 >gi|254294565|ref|YP_003060588.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814] gi|254043096|gb|ACT59891.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814] Length = 568 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 145/563 (25%), Positives = 262/563 (46%), Gaps = 15/563 (2%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + + + K T+ G+ RI+ A +++ + + LY L++++ I Sbjct: 1 MAETVSIIKKITNGGQMRIIA-ALMVVALVGAGLGFIMLRGGADEALLYSGLDLTESAEI 59 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 S L +ANI + I +G+SI V V AR+ L+ +GLP+ + GYE+FDK + G T Sbjct: 60 SGRLDQANISYTIRGDGASIFVNRDQVLDARMMLSEEGLPTRGA-MGYEIFDKSEALGTT 118 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINP 182 SF+Q I RVRALEGE+ARTI S+ I +RVH+V+P+ F + P+ASV+I A Sbjct: 119 SFVQNINRVRALEGELARTISSLDNIRGSRVHLVLPERRLFERGTQTPSASVVISVAGRG 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239 + AIR+L+A +VPNL++ +T+LD G+LL A N G + I+ Sbjct: 179 MLPSQVRAIRNLIAGSVPNLEVNRITLLDDKGRLLAAGAENSENGFSGGSADERQTGIED 238 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 +I + + + G R V A+++ + ++DP+ +V RS ++D+ R + Sbjct: 239 QIRNKVLSVVESVTGPGAARVQVAADIDFNRITQSSEIFDPEGRVIRSSTTTEDSSRESS 298 Query: 300 SQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++P AVT E N+P + P S T+ +E +NYEI+ + + ++ ++S Sbjct: 299 TEPAGAVTAENNIPAGTAADGPADPTSQAETNHLQETTNYEISKTTKTEITEGGRIRKIS 358 Query: 359 IAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +AV ++ R+ + + +A I +V +A G + RGD + + ++ F+ + Sbjct: 359 VAVALDDVRVPGADETEATFAPRTPEEIANIKTLVRSAVGYDEARGDIVEVVNVSFMRPE 418 Query: 418 -LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 N + + + VG +L+ L L + A+ G+ Sbjct: 419 SSVNLAIEDPGMLGLTKNDIMRISELAALFVGAVLLIIFVLRPLVKGLMSPSAESGDSFY 478 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ------SRINSYVSKQSDLR 530 P S + ++N+ L S +RI+ V+ S + Sbjct: 479 VGEAKLPGGSGNAAQKVTLSENLVLPGSGDGGNGQITEDDQFGLDVARISGKVNASSVKK 538 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + ++E + + +I+R W + Sbjct: 539 ISEVVESHPDESIQIIRAWLSED 561 >gi|167579440|ref|ZP_02372314.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH] Length = 518 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 195/443 (44%), Gaps = 15/443 (3%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV++ AI LV+++VP++ +VT++D G LLT Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ I+ + I+ LA G N RS V A+++ + Y Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328 P+ ++S S+ S S N P + P + Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +D+K+ +NYE++ ++RLS+AVVVN T+ GR Q LA++ Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G + +RGD++ + + F + D++ V Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495 Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471 L ALRR Sbjct: 496 AALYFMFVRPALRRAFPPPAEPA 518 >gi|74317618|ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitrificans ATCC 25259] gi|74057113|gb|AAZ97553.1| flagellar M-ring protein FliF [Thiobacillus denitrificans ATCC 25259] Length = 548 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 119/560 (21%), Positives = 217/560 (38%), Gaps = 46/560 (8%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 T R ++L + + + A + P Y L+ D I L + N+ Sbjct: 16 FTRTAGGRKILLMLGVAASVAVMAAVWMWGQQPEYRVLFSNFSDRDGGAIVAELEKMNVP 75 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++ ++ G ++ VP+ V AR+ LA+QGLP N G+EL + G + F++++ R Sbjct: 76 YKYAEGGGAVLVPADRVHDARLKLASQGLPK-GGNVGFELM-ENQRLGASQFVEQVNFQR 133 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAI 191 A+EGE+AR+I+S+S + AARVH+ +P F +PTASV++ + AI Sbjct: 134 AMEGELARSIESVSAVQAARVHLALPKDSIFVSEQKQPTASVLLNLHPGRALDPQQVSAI 193 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEMNINKA 248 HLVA++VP L +VTV+D G LL+ + + VQ +Q ++ I Sbjct: 194 VHLVASSVPELATKNVTVVDQNGNLLSDAGKAPRVNGMDPSQIKYVQELQQDVVQRIESI 253 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS--ETSQPESAV 306 + +G N R+ A+++ + Y P+ + S+ S ++ P Sbjct: 254 ITPIVGPGNVRAEATADVDFSRSEQAVESYKPNQTPDAMAIRSQQTSESLNGSANPAGVP 313 Query: 307 TVEQNMPHVSDRKVPL------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P + +K+ NYE++ L Sbjct: 314 GALINQPPAPATAPITVPGQATPAPAAAAAQPATSTRKDATVNYEVDKTIQYVQQAGGGL 373 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS+ VVVN + + G+ A + ++ +I +V A G N RGDT+ + + F Sbjct: 374 KRLSVGVVVNYKKTVDKAGKVAMKPLSEAEKTQITNLVKEAMGYNQARGDTVNVVNSPFA 433 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 Q + + +F N +L+ + + L L + L ++ Sbjct: 434 SAQEEDLPQPPFWKQPEYAEYFDIARNVGKYLLMGIALLLLYLKVAKPLLKKMSEQQALA 493 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L +++ L +++ R + Sbjct: 494 APNHPLHLEQLATDERAALPGQ-------------------------RNYQENLSRAQRL 528 Query: 535 IEINEERFAKILRKWARSEI 554 + A I++ W + Sbjct: 529 ANEDPRVVANIVKTWVANND 548 >gi|254496581|ref|ZP_05109449.1| flagellar MS-ring protein [Legionella drancourtii LLAP12] gi|254354205|gb|EET12872.1| flagellar MS-ring protein [Legionella drancourtii LLAP12] Length = 547 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 117/573 (20%), Positives = 233/573 (40%), Gaps = 52/573 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + L + + + +A + P+Y LY ++ D Sbjct: 1 MALADNASMVAAKFASLSIPRQIGLLIGLAASVAVGLAVVLWSRDPNYVPLYTQMNTRDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + AL I+F+I +N S+I +PS+ + R+ LAA+GLP + ELF N+F Sbjct: 61 AEVVSALERNGIEFKIDNNNSTILIPSANLQSTRLKLAAEGLPRD-PVASEELFSSGNAF 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 + FM+ +ALE E+ARTI + I AARVH+ +P +F + +P+ASV I Sbjct: 120 NSSQFMENARYKQALEAELARTISKFNDIKAARVHLAIPRESAFVRDIHQPSASVFIDVY 179 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQA 236 + K + AI +LVA+++PNL VTV+D G+LL + L Q Sbjct: 180 SGLELKKHTVSAIVNLVASSIPNLSASRVTVVDQDGQLLNEGSGQTLFTDTERFLDYRQN 239 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + I L LG R+ V A+++ + + + +++P+ RS + ++ Sbjct: 240 LEQQYAQKIQDILTPLLGYGRVRAKVSADIDFTSYEQTQEMFNPELPSLRSEQTMQEKHN 299 Query: 297 SETSQPESAVTVEQNMPHVSDRKVP------------------LPRSLENTDKKEEQSNY 338 + + N P + + + + + N+ Sbjct: 300 AAS-DAIGVPGTLSNTPQPNPSLNNKNPAAPNAQQQQQPAQSSSDANQSSDTRTQSTKNF 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATG 397 E++ T + ++RLS+AV+V+ + + + + + +I +V+ A G Sbjct: 359 ELDKTISHTKNQPGTIKRLSVAVLVDNPAIMDTKTKTMIKKALTAKEIDQIKLLVADAIG 418 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 +NS+RGD++ + + DF++ + + F +++ + + L + F L Sbjct: 419 LNSQRGDSLNVINSDFVKPDPIAPIPEERFWQ---KDIFWSIVKQVAGALFVLAMIFGVL 475 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 + + + + D+ + Sbjct: 476 RPMLKTLASNK------------------------GVGEGAYLEDTDEPQGDLTYDGTIA 511 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 ++ + L +++ +R A++++ W Sbjct: 512 IKDANDYESQLNLLRQVVDKEPKRVAQVVKTWV 544 >gi|253990094|ref|YP_003041450.1| flagellar MS-ring protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781544|emb|CAQ84707.1| flagellar basal-body m-ring protein [Photorhabdus asymbiotica] Length = 567 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 130/584 (22%), Positives = 236/584 (40%), Gaps = 56/584 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q F + + L I + +A ++ SP Y LY L D Sbjct: 7 DIENQTNGFSTIINRIKADPKVPLLVAGSAAIAIVIALFLWLRSPDYRVLYSNLSDKDGG 66 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ NI +R ++NGS+I +P+ V + R+ LA QGLP + +G+EL DK FG Sbjct: 67 EIVTQLTQLNIPYRFAENGSAIMIPAGQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 ++ F +++ RALEGE++RTI+S+ + ARVH+ +P F + P+ASV + Sbjct: 125 ISQFSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238 AI H+V+++V L +VT++D G+LLT + R++ L +Q ++ Sbjct: 185 GRTLDEGQINAIVHMVSSSVAGLPPSNVTIVDQAGRLLTQADATGRDLNTSQLKYIQEVE 244 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295 + + I L +G N + V A+++ ++ Y P+ ++ SK +++ Sbjct: 245 NRFQQRIEAILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESE 304 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK----------------------- 332 +S N P + + ++K Sbjct: 305 QSGGPLVGGIPGALSNQPSPPPSAPIEKPNTKESNKSDKSDKKTSSSGNSNERMVNNNRN 364 Query: 333 ---EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 +E +NYE++ +ERLS+AVVVN + G Q LA+I Sbjct: 365 NRRDETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLAKIE 423 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 + A G + RGD++ + + F E++ +L + F Sbjct: 424 ALTREAMGFSKERGDSLNVVNTPFTESKENIEVIPVWQNPILLEKAFDFG---------- 473 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L + + V + +A+ S+ D Sbjct: 474 --------RYLLLILVAWLLWRKMVVPQLAKKRAAEKAALEAQKAQKKQATESSAEMDER 525 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R + R+++ + Q R+ + E + A ++R+W +E Sbjct: 526 TRQRLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566 >gi|37525871|ref|NP_929215.1| flagellar MS-ring protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785300|emb|CAE14241.1| flagellar basal-body M-ring protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 567 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 127/584 (21%), Positives = 240/584 (41%), Gaps = 56/584 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +Q F + + L + + +A ++ SP Y LY L D Sbjct: 7 DVENQTKGFSAIINQIKADPKVPLLVAGSAAVAIVIALFLWLRSPDYRVLYSNLSDKDGG 66 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ NI +R ++NG++I +P+ V + R+ LA QGLP + +G+EL DK FG Sbjct: 67 DIVTQLTQLNIPYRFAENGAAIMIPAEQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 ++ F +++ RALEGE++RTI+S+ + ARVH+ +P F + P+ASV + Sbjct: 125 ISQFSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238 AI H+V+++V L G+VT++D TG+LLT + R++ L +Q ++ Sbjct: 185 GRTLDEGQINAIVHMVSSSVAGLPPGNVTIVDQTGRLLTQADATGRDLNTSQLKYIQEVE 244 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295 + + I L +G N + V A+++ ++ Y P+ ++ SK +++ Sbjct: 245 NRFQHRIETILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESE 304 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN--------------------------T 329 +S Q N P + + Sbjct: 305 QSGGPQVGGIPGALSNQPSSPPSAPIDKPNTKENNKNDKSDKKASSAGNSNERTVNSNRN 364 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 ++++E +NYE++ +ERLS+AVVVN + G Q L +I Sbjct: 365 NRRDETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLTKIE 423 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 + A G + RGD++ + + F E++ +L + F Sbjct: 424 ALTREAMGFSKERGDSLNVVNTPFTESKENIEVIPVWQNPVLLEKAFDFG---------- 473 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L + + V + +A+ + + S+ D Sbjct: 474 --------RYLLLILVAWLLWRKMVVPQLAKKRAAEKAALDAQKVQKRQVTESSAEMDEK 525 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + R+++ + Q R+ + E + A ++R+W +E Sbjct: 526 TRQKLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566 >gi|167900849|ref|ZP_02488054.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177] Length = 500 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 202/463 (43%), Gaps = 15/463 (3%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + L + I +A + +P Y LY L D I AL +AN+ Sbjct: 27 GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 86 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ F +++ Sbjct: 87 PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 144 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190 RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ A Sbjct: 145 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 204 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 + +V+++VP++ +VT++D G LLT + L VQ I+ + I+ LA Sbjct: 205 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 264 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307 G N RS V A+++ + Y P+ ++S S+ S S Sbjct: 265 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 324 Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + P + +D+K+ +NYE++ ++RLS+ Sbjct: 325 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 384 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + F Sbjct: 385 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 444 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + D++ V L ALRR Sbjct: 445 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 487 >gi|170743231|ref|YP_001771886.1| flagellar MS-ring protein [Methylobacterium sp. 4-46] gi|168197505|gb|ACA19452.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46] Length = 539 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 123/549 (22%), Positives = 234/549 (42%), Gaps = 14/549 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + G R+ + +V LV + F V+ P LY L + D + Sbjct: 1 MQPVLDLMAKFGPARLAAMGAVTLVLVGFFAFVILRVSRPELGVLYADLSLQDAGAVIRD 60 Query: 67 LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + + G +I P + + + R+ LA +GLPS+ GYELFDK ++F T+F Sbjct: 61 LEARGIRYETRGDLGQTILAPRADLPRLRMDLAGKGLPSAGG-VGYELFDKGDAFSTTTF 119 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + +RA EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ Sbjct: 120 VQNVNHLRAQEGELARSIRAIGRVQAARVHLVIPEKRLFNRDRELPSAAIVLKLAGDLDP 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243 A+RHLVA++V L ++++D G+LL + + +++ + Sbjct: 180 GQVRAVRHLVASSVEGLKPERISIVDERGRLLADGAGRDDAQAVLGLDERQASLEQRLRA 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + +A +G R V AEL+ + R +DP+S+V RS + + S+ Sbjct: 240 QVEGIVAGIVGAGRARVQVAAELDPSRIESRSESFDPESRVVRSSQTRSETSASQGPGET 299 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N + + E ++K EE +NYEI+ + ++ +++RLS+AVV+ Sbjct: 300 GV--SVGNELPGARETAQANGTRETSNKNEETTNYEISRVTRTEVNEGGRIKRLSVAVVI 357 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ + L I +V A G + RGD + + ++ F + + Sbjct: 358 DGSYQPGPDGKPVYAPRSQEELDRITALVRTAVGYDKGRGDQVEVANLRFADTAVPAELP 417 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + +L V+ + V LL + L +R L + Sbjct: 418 EEGLLASLLKPTKEEVLRLVELAVLALLTLVVVLAVMRPLLRRVLPAEAPPEPALAAVAV 477 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 ++ P + + + ++IN + ++ R+ ++ N A Sbjct: 478 LPAAGAEGEGAP--------ALPESPARQLVEFAKINGKIQAETIARVAEIVRQNPVETA 529 Query: 544 KILRKWARS 552 ++LR W + Sbjct: 530 EVLRGWIQD 538 >gi|254559216|ref|YP_003066311.1| flagellar M-ring protein FliF [Methylobacterium extorquens DM4] gi|254266494|emb|CAX22258.1| Flagellar M-ring protein FliF [Methylobacterium extorquens DM4] Length = 559 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 190/560 (33%), Positives = 311/560 (55%), Gaps = 7/560 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGAAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G +L A + GK ++ +++ Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +++PD +VERS+R ++++ ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K++ T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RLT + G D+ +D +AEI ++V +A G + RGDTI + ++ F+ + Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478 +S D++ + T+INA LV L+ + GL LR + + + EV + Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535 L P+ +A T + AL S++ + L + +++ RL +I Sbjct: 479 GLEGAPVLAADGTMALAAPGAALPGSSEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538 Query: 536 EINEERFAKILRKWARSEIE 555 +I+EE+ A +L++W E Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558 >gi|71906412|ref|YP_283999.1| flagellar MS-ring protein [Dechloromonas aromatica RCB] gi|71846033|gb|AAZ45529.1| Flagellar FliF M-ring protein [Dechloromonas aromatica RCB] Length = 584 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 126/584 (21%), Positives = 231/584 (39%), Gaps = 58/584 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + ++ LG + ++ I I + + A + P + L+ L D I+ Sbjct: 16 NPVDRLREAFNRLGSQQKIVFMVAIAALIAIIVGAILWSRQPDWKVLFSNLTEKDGGSIA 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + NI R S++G ++ VPS V + R+ LA+QGLP G+EL + FG++ Sbjct: 76 AILEQQNIPHRYSNSG-ALLVPSDRVHEVRLKLASQGLPRGGM-VGFELM-ENQKFGVSQ 132 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ R LEGE+ARTIQSI + +ARVH+ +P F + +PTASVM+ Sbjct: 133 FAEQVNYQRGLEGELARTIQSIGSVQSARVHLAIPKPSVFVREEQKPTASVMLNLYPGRT 192 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239 I HLV+++VP L +VTVLD +G LL+ + E + + V +++ Sbjct: 193 LDGGQIAGITHLVSSSVPQLPASNVTVLDQSGALLSQLKSKLTEAGLDPTQIKYVHDVEN 252 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I I++ L+ LG DNF+ V A+++ + Y P++ E + S+ + Sbjct: 253 SIIKRIDEILSPLLGADNFKVQVAADIDFSQTEQTAESYRPNNTPESTSIRSQQNNETAN 312 Query: 300 --SQPESAVTVEQNMPHVSDRKVPLPRSLEN----------------------------- 328 N P V + Sbjct: 313 VNQAAGGVPGALTNQPPVPATAPLTQPATGTTPGQPAKPGEPQGKIDAAGVTAPLNAAGQ 372 Query: 329 --TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 + K NYE++ T + RLS AVVVN + + G+ + D+ + Sbjct: 373 PISTSKNATINYELDKTIRHTRQGMGNIRRLSAAVVVNHRKDVDKTGKPLTKAIPDAEMK 432 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +IN++V A G RGDT+++ + F + + + + + + L +L Sbjct: 433 QINELVREAMGFTKERGDTLSVANAPFTAIDKSENELP----IWKDPENVSYIKDILKYL 488 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 + ++ FL + ++ + E + P + Sbjct: 489 LIAAIIAFLYIKLIQPSLKTMFPARHEGEKHAGDGTGPGGIFGGITGSAEEA-------- 540 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + +++ + E + + A I++ W Sbjct: 541 -----GEDGSTQVTIDNYAIKIQKAREFAEKDSKAVANIIKDWM 579 >gi|188583761|ref|YP_001927206.1| flagellar MS-ring protein [Methylobacterium populi BJ001] gi|179347259|gb|ACB82671.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001] Length = 538 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 142/552 (25%), Positives = 253/552 (45%), Gaps = 21/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + T LG RI +A+V L + F V+ P L+ L + D + + Sbjct: 1 MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSMQDSSAVIRE 60 Query: 67 LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + G ++ P + + K R+ A +GLP+ GYE+FDK ++F TSF Sbjct: 61 LDARGIAYETKGELGQTVLAPRADLAKLRMDFAGKGLPAQGG-IGYEIFDKGDAFSSTSF 119 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + +RA+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDP 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 AIRHL A+AV L V+++D G+LL E G I+ + Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEAEGAGALEERQAGIERRMRA 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + +A +G R V AEL+++ + R +DP+S+V RS + ++ S T E Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V+V +P + + P P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V Sbjct: 298 GQVSVGNELPGANQNQPP-PQQKDSSQKNEEVTNYEISRVTKVETLEGGRLKRLSVAVLV 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G++A Q + D+ +A I +V A G + RGD + + ++ F E Sbjct: 357 DGVYAPGADGKAAYQPRSDAEIARIAALVRTAVGYDKARGDQVEVVNLRFAETPAAAEFA 416 Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SF+ ++ V + TL+V + L R DA + G ++ Sbjct: 417 EPGLIQSFLSPSKEDVMRLVELAVLSLLTLIVLMAVVRPLLRRVLESDAPVAALAGPALA 476 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 T + ++ ++IN + ++ R++ M+ + Sbjct: 477 LAGAGGEGPTEIAVRE-----------NSTNKFLESAKINGQIQAETVERVVDMVRASPT 525 Query: 541 RFAKILRKWARS 552 ++LR W Sbjct: 526 ETVEVLRNWIHD 537 >gi|313673744|ref|YP_004051855.1| flagellar m-ring protein flif [Calditerrivibrio nitroreducens DSM 19672] gi|312940500|gb|ADR19692.1| flagellar M-ring protein FliF [Calditerrivibrio nitroreducens DSM 19672] Length = 554 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 130/563 (23%), Positives = 239/563 (42%), Gaps = 20/563 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + D QF + + + + S + ++ + ++ N P Y L+ L D Sbjct: 1 MNLKDVGEQFKTVFQKFSKVQQIAIISAAVAILLSIIVLVYWANKPVYKILFANLSQEDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L I + + D+G +I VP+ V + RI LA +G+P G+ELFDK + F Sbjct: 61 AEVVAKLKAKKIPYNLKDSGKTIEVPAKDVYETRIELAKEGIPKGGG-VGFELFDKTS-F 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179 G+T F Q + RAL+GE++RTI ++ + ARVH+ +P F A+V+++ Sbjct: 119 GITEFAQNVNYQRALQGELSRTISTLEEVEEARVHLTLPKDKLFITEDGEAKAAVVLKLK 178 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIV 234 +AI LV AV L + +V ++D+ G LL+ + E N+ L Sbjct: 179 KGETLNRDKVKAIASLVVGAVKGLKIQNVQIVDTQGNLLSESLNEENLPYVKTQTQLEYQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ I IN LA LG +N + V AE++ D ++I + +D + V RS + + Sbjct: 239 KKVEKIISSKINSLLATTLGENNAVAQVTAEIDFDKKEINKEEFDQN-PVLRSSQTIEIE 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++ + P+ VE N+ + + K EE N+EI + Sbjct: 298 SKNTPNTPQGQPGVEPNLAEPN---IQQNGVNSTYTKNEETQNFEIGKTVTKEEKSIGSI 354 Query: 355 ERLSIAVVVNKGRLTEVLGR---SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +RL+IAVVVN G+ + + L +I +V+ A G + +RGD I +T++ Sbjct: 355 KRLTIAVVVNDKAEIVKEGKKEVTKYVPRTKEELDKIKGLVAKAAGFDEKRGDQIEVTNV 414 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F +Q+ S ++ M+ L + ++ LV LL FL + + + K Sbjct: 415 SFDTSQMSESKLLEKEKMNEL---IIQISKYVMVLVMFLLFYFLVIRPIMKKLGDIKETK 471 Query: 472 GEVGGKSILSP--PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 P + + + + + + +K Sbjct: 472 SGELAAVGDIPLKGANVDLQLDDSVKFPKTLEELEREIESELDEKVSVDVGTVKTKVMVK 531 Query: 530 RLLHMIEINEERFAKILRKWARS 552 ++ ++ + E A +++ W + Sbjct: 532 KIEEAVKEDPEMIANLIKTWLKE 554 >gi|94500269|ref|ZP_01306802.1| flagellar M-ring protein [Oceanobacter sp. RED65] gi|94427568|gb|EAT12545.1| flagellar M-ring protein [Oceanobacter sp. RED65] Length = 577 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 115/557 (20%), Positives = 223/557 (40%), Gaps = 31/557 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L R + L + L + + Y L LE + I Sbjct: 39 INPIMMGFNKLTIVRQVALLIGFAGILALGIGVIIWSQEVTYRPLISNLEDYNAKEILQT 98 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E ID+RI+ ++VP + + AR+ LA + + G EL D+ G + F+ Sbjct: 99 LDEKGIDYRINPTTGIVTVPEAEIHDARLALAPI-VAEIDTTVGLELLDQEQGLGTSQFI 157 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184 + R LEGE+ARTI S+ + ARVH+ +P F + P ASV + Sbjct: 158 ESARYRRGLEGELARTIASLQSVRNARVHLALPKQSVFVRDDREPRASVFLEIYGGKGLK 217 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIE 242 + AEAI +L+A+++P L + +VT++D G LL+ + E + K + +++ + Sbjct: 218 REQAEAIINLIASSIPELPVENVTLVDQKGNLLSKEGQDEEDLLATKQFDYTRKVENSLH 277 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + L LG DNF++ V A+++ + + +++PD RS + Q Sbjct: 278 QRVQRILEPVLGSDNFQAEVSADVDFTMVEQTQELFNPDLIALRSEQTL--NQEKVEKPE 335 Query: 303 ESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + P + K E NYE++ T H +L R Sbjct: 336 GGIPGALSNQPPGAAEVPEEVDENGNPVAQPIERKSEATRNYEVDRTLSHTQHQVGRLRR 395 Query: 357 LSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 L+++V V ++ ++ G ++ L + +V + G N+ RGD++++ + FL Sbjct: 396 LTVSVAVNDREKVNPETGVVESVPWTEAELKRLELLVKDSVGFNAARGDSVSVVNSLFLG 455 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + F ++ ++ + L++ F + + + + +G++ Sbjct: 456 GAVELGEPDFWK-----QPWFWEIVKQVLAGLFLLILIFGVIRPIVK----NLIDRGKMD 506 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + L +D + L +++ + + R L +I Sbjct: 507 EVAEIEGELDELGDGDDLFGDDKVTLAGADEFLLPGASEGFER--------QLDALKGLI 558 Query: 536 EINEERFAKILRKWARS 552 + R A+ +KW Sbjct: 559 AEDPARVAQSFKKWVND 575 >gi|238788332|ref|ZP_04632126.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641] gi|238723578|gb|EEQ15224.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641] Length = 569 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 124/583 (21%), Positives = 230/583 (39%), Gaps = 58/583 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L I + +A + SP Y LY L D I Sbjct: 10 NRENTFTTTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +D+G ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADHGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F +++ RALEGE+ARTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L +VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIETILAPMVGSGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSSSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSD----------------------------RKVPLPRSLENTD 330 N P + + + Sbjct: 308 GSNVGGVPGALSNQPSATPVAPIEVPQPAAAPGATGAAANNANAANSPATTRSTATSSNS 367 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + ++ +N+E++ T ++RLS+AVVVN G LA++ Sbjct: 368 RHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPIALTKDQLAQVES 423 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 + A G ++ RGDT+ + + F + + ++NA +L+ L Sbjct: 424 LTREAMGFSTDRGDTLNVVNTPFNATDNASGNALPFWQQPSFFDQ---LLNAGRYLLILL 480 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 + L +R L + + + A T + +AL NQ S Sbjct: 481 VAWILWRKLVRPLIAKKQIADKAAASVNNIV--QTAQATETAKQSKEELALRKKNQQRVS 538 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R+ + + + A ++R+W ++ Sbjct: 539 A-------------EVQAQRIRELADKDPRVVALVIRQWMSND 568 >gi|332161342|ref|YP_004297919.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665572|gb|ADZ42216.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863306|emb|CBX73430.1| flagellar M-ring protein [Yersinia enterocolitica W22703] Length = 559 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 117/538 (21%), Positives = 219/538 (40%), Gaps = 48/538 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV ++ AI ++V+++V L +VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 TANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ + L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV------------- 320 Y P+ + S+ SE N P + Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342 Query: 321 -----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + + + ++ +N+E++ T ++RLS+AVVVN G Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAG 398 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 LA++ + A G ++ RGDT+ + + F + + Sbjct: 399 KPIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPS---F 455 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 F ++N +L+ L+ L +R L + + ++ Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPLIAKKQEADKAAASVNNIVQAAQTTETAKQTKE 515 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 516 E------------LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558 >gi|238920311|ref|YP_002933826.1| flagellar MS-ring protein [Edwardsiella ictaluri 93-146] gi|238869880|gb|ACR69591.1| flagellar M-ring protein FliF, putative [Edwardsiella ictaluri 93-146] Length = 569 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 123/578 (21%), Positives = 224/578 (38%), Gaps = 56/578 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + + L V I + + + +P Y LY + D I L Sbjct: 18 NSIKAILERVRANPKIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQL 77 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++NG+++ VP+S V R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 78 TQMNIPYRFANNGTTLMVPASDVYATRLKLAQQGLPRGGA-VGFELLDQE-KFGISQFSE 135 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185 ++ RALEGE+ARTI+++ +V+ARV + P F + +P+ASV + Sbjct: 136 QVNYQRALEGELARTIETLGPVVSARVLLAEPKPSLFVREQKQPSASVTLTLEPGRVLDD 195 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMN 244 AI ++V+++V L G+VTV+D G LL+ + R++ L ++ ++ Sbjct: 196 GQINAIVYMVSSSVAGLPPGNVTVVDQYGHLLSQPDGTGRDLNAAQLKFTAEVESRLQRR 255 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-- 302 I L LG N + V A+L+ +++ + Y P+ ++ SK +S+ S Sbjct: 256 IETILQPMLGNGNVHAQVTAQLDFASREQTDEEYTPNQPPNQAAVRSKQINQSDQSGGLQ 315 Query: 303 -ESAVTVEQNMPHVSDR------------------------KVPLPRSLENTDKKEEQSN 337 N P + S +++E N Sbjct: 316 SGGVPGALSNEPAPAPTGHINGKPRSAQGGNGAANRSNAVSNNGRQSSRSENFRRDETIN 375 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 YE++ T +ERLS+AVVVN + + + +IN +V A G Sbjct: 376 YEVDRTIRHTKARAGTIERLSVAVVVNYAS----DTKGKEVALSQQKMDQINNLVREAMG 431 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + RGDT+++ + F + + +L+ L+ L Sbjct: 432 FSQSRGDTLSVVNTPFNSVEDNGGELP----FWQKQAFIDLLTTLGRYLLVALVAWLLWR 487 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 ++ L ++ P S Q + + Sbjct: 488 KLVKPLLTKQQQAAAAAQQRADTPPLSAQP----------------SKQLSNEELQQRRK 531 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ R+ M E + A ++R+W +E + Sbjct: 532 LQQRSTAEAQTERVREMAEQDPRVVALVIRQWMSTEQQ 569 >gi|123442764|ref|YP_001006741.1| flagellar MS-ring protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089725|emb|CAL12578.1| flagellar M-ring protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 566 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 120/580 (20%), Positives = 229/580 (39%), Gaps = 55/580 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L + + +A + SP Y LY L D I Sbjct: 10 NRENTFTTTLARLRANPKIPLLIAAAAAVAILVALMLWAKSPDYRVLYSNLNDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F +++ RALEGE+ARTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L +VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIETILAPMVGSGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------PLPRSLENTDKKE 333 N P + + + + + Sbjct: 308 GTNVGGVPGALSNQPSATPVAPIEIPQATPAAGAGAAANAANRPATAARQTATSSNSRHD 367 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 + +N+E++ T ++RLS+AVVVN G LA++ + Sbjct: 368 QTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPIALSKDQLAQVESLTR 423 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A G ++ RGDT+ + + F + + ++N +L+ L+ Sbjct: 424 EAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPSFFDQ---LLNIGRYLLILLVAW 480 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 L +R L + + ++ + + Sbjct: 481 ILWRKLVRPLIAKKQEADKAAASVNNIVQAAQTTETAKQTKEE------------LALRK 528 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 529 KNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 565 >gi|238751780|ref|ZP_04613268.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] gi|238710051|gb|EEQ02281.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] Length = 564 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 119/543 (21%), Positives = 218/543 (40%), Gaps = 53/543 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +D+G ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADSGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV ++ AI ++V+++V L +VTV+D TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222 Query: 218 TANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ + L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322 Y P+ + S SE N P + Sbjct: 283 EYKPNQSANQGAVRSAQISTSEQLGGSNVGGVPGALSNQPSATPVAPIEVTQPAGANNAN 342 Query: 323 ------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 + + + ++ +NYE++ T ++RLS+AVVVN G Sbjct: 343 AAARPAATPAARSTATSSNSRHDQTTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYGS--- 399 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 LA++ + A G ++ RGDT+ + + F + Sbjct: 400 -DKAGKPIALTKDQLAQVESLTREAMGFSTNRGDTLNVVNTPFNATDDTTGRALPFW--- 455 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 F ++NA +L+ L+ L +R + + + + + Sbjct: 456 QQQSFFDQLLNAGRYLLILLVTWILWRKLVRPMLAKKNVADKAAASVNSMVQAAQVTE-- 513 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 T + +AL NQ S + R+ + + + A ++R+W Sbjct: 514 TVKQSKEELALRKKNQQRISA-------------EVQAQRIRELADKDPRVVALVIRQWM 560 Query: 551 RSE 553 ++ Sbjct: 561 SND 563 >gi|212709512|ref|ZP_03317640.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM 30120] gi|212687850|gb|EEB47378.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM 30120] Length = 563 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 121/533 (22%), Positives = 227/533 (42%), Gaps = 34/533 (6%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA Sbjct: 44 LLLWFRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ + Sbjct: 104 QSGLPK-GGNTGFELLDKE-KFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + PTASV + AI H+V+++V L +V ++D TG+L Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRL 221 Query: 217 LTANEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT N+ + + + + ++ ++ I L+ +G N + V A+++ + Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMEAHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281 Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMP-------------HVSDRK 319 Y P+ + + S+ + S P N P + + Sbjct: 282 EEYKPNQTPDAAAVRSRQSSESLQNSNGGPSGVPGALSNQPVSAPSAPIDGNKENTDGKT 341 Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 R+ +++E +NYE++ K T ++RLS+AV+VN G + Sbjct: 342 AGNTRNGTLNTQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQSQEGEKG-PEMKP 400 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 L +I+ + A G +++RGD+I IT+ F ++ +S ++S+ Sbjct: 401 LPPEMLQQIDALTREAMGYSAQRGDSINITNSLFTDDTPVIEEPSLLSSPQVISQ----A 456 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 ++ ++ L+ F+ ++ + + + + Sbjct: 457 LDYGKIVLIALIAWFMWRFGIKPQWVKYRKTQQAQIDAEMSIANASQVKAPFVVEEEISE 516 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 +D + + R + R+ M E + + A ++R+W Sbjct: 517 DMDEKTRRRLTRQRVSA--------EIQSQRIREMAEKDPQVVAMVIRQWLGK 561 >gi|271500086|ref|YP_003333111.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586] gi|270343641|gb|ACZ76406.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586] Length = 574 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 128/588 (21%), Positives = 232/588 (39%), Gaps = 67/588 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY L D I L Sbjct: 13 KSFGEILNRLRANPKIPLLIAAAATIAIVVALSLWARGPDYRALYTNLNERDGGSIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + NI +R ++NG++I +P+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 73 GKMNIPYRFAENGAAILIPADKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 +I RALEGE+ART++++ I +ARVH+ +P F + P+A+V + Sbjct: 131 QINYQRALEGELARTMETLGPIQSARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 AI +LV+++V L VTV+D TGKLLT N+ + L ++ + Sbjct: 191 SQINAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDGSGRDLNAAQLKYANEVESNYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 I L +G N + V A+++ ++ + Y P+ ++ S+ +S+ Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFANREQTDEQYQPNQTPNQAAVRSQQTSQSDQRGGPN 310 Query: 299 --------TSQPESAVTVEQNMPH------------------------VSDRKVPLPRSL 326 ++ P A T + P + + Sbjct: 311 VGGVPGALSNTPTPAPTAPISTPPTNNANNANNANNTNNANNANAAGNNTQTSASNSANQ 370 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 ++++ NYE++ T ++RLS+AVVVN G+ A D L Sbjct: 371 TFNSRRDQTINYEVDRTIRHTKQSTGSVQRLSVAVVVNY--TQGEDGKPA--ALSDEQLK 426 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I +V + G +S RGD++ + + F F +I A +L Sbjct: 427 KIEALVRESMGFSSDRGDSVNVVNTPFTVTDTSAGELP----FWKKQAFFDLLIEAGRWL 482 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 + ++ + +R + + L +VT M + Sbjct: 483 LVLIVGWIMYRKLVRPQLQRRSQIQQAAEAAAALRGQDSDVSVTISAMEEE--------- 533 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + R ++ + Q R+ + E + A ++R W +E+ Sbjct: 534 ----IQKKSEQRAHAEMHSQ---RIRELAENDPRVVALVIRHWMSNEL 574 >gi|167588531|ref|ZP_02380919.1| flagellar MS-ring protein [Burkholderia ubonensis Bu] Length = 487 Score = 353 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 111/441 (25%), Positives = 190/441 (43%), Gaps = 15/441 (3%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LA Sbjct: 50 LVLWTRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLA 109 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A GLP S G+EL D FG++ F ++I RALEGE+ RTI+S++ + AARVH+ + Sbjct: 110 ALGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESVNAVKAARVHLAI 167 Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + AI +V++ VP++ +VT++D G L Sbjct: 168 PKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVLAITRMVSSGVPDMPAKNVTIVDQDGNL 227 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 LT + L VQ ++ + I+ LA G N RS V A+++ + Sbjct: 228 LTQPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSRLEQTSE 287 Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSL 326 Y P+ +++ S+ + N P P++ Sbjct: 288 SYGPNGTPQQTAIRSQQTSTATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQAT 347 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 +D+K+ +NYE++ ++RLS+AVVVN + + G Q + LA Sbjct: 348 PVSDRKDSTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADSKGHVTMQPLPPAKLA 407 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 ++ ++V A G +++RGD++ + + F + + L Sbjct: 408 QVEQLVKDAMGYDAKRGDSVNVVNSTFTAAGDPYANLP-WYRQPAIIDMAKEAAKWLGIA 466 Query: 447 VGTLLVTFLGLHALRRLHNID 467 + F + R Sbjct: 467 AVAAALYFAVVRPAMRRAFPP 487 >gi|331005205|ref|ZP_08328599.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] gi|330420987|gb|EGG95259.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] Length = 565 Score = 353 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 117/558 (20%), Positives = 234/558 (41%), Gaps = 25/558 (4%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + +L R + L + + + A + Y LY L D + I L Sbjct: 21 SNLVEGFNNLNLLRQVGLMVALAASVAIGFAVVLWTQEEDYRPLYSNLNQLDSSEIISIL 80 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I F++ ++ V + + AR+ LA GLP++ S G+EL DK G + FM+ Sbjct: 81 EQNAIQFKVDTKTGALLVSAQDIHTARLKLAEVGLPNTGS-VGFELLDKEQPLGSSQFME 139 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VY 185 R LEGE+ARTI S++ + AARVH+ +P F + P ASV + Sbjct: 140 ATRYRRGLEGELARTITSLNAVRAARVHLAIPKRSVFVRDAREPRASVFVELYPGRAITP 199 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243 + A+ +LVA+++ L + +VT++D G LL+ E + + + L + ++ +I Sbjct: 200 QQVVAMSNLVASSISELSLKNVTIVDQKGNLLSKGEEDPQLVQAAQELEYTREVEKKIIS 259 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I L +G D FR+ V A+++ + + E +++PD RS + + + Sbjct: 260 RIQALLDPIVGGDRFRAEVAAQVDFNQVEQAEEMFNPDLPAIRSEQTVDEQRVGGGVGG- 318 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +N + + + N+E++ T H K+ R Sbjct: 319 -IPGALTNQPPANADAPEIAAGGDNNNAQQSSNSRSQSTRNFELDRTMSYTKHQVGKVRR 377 Query: 357 LSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 LS+AVVV+ +T+ G + D+ + ++ +V A G + RGD++ I + FL Sbjct: 378 LSVAVVVDDRLVTDPLTGEQKYETWSDNEIERLSILVRDAVGFSPARGDSVNIINTPFLN 437 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + +F + F +I ++ L+ L++ L + + ++ + Sbjct: 438 DGFNAEEIQAPNFWEE--EWFTALIKPIIGLLIILIMVLGLLRPILKTLARTGSETRDDE 495 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L+ + + + ++ + L + +Q + ++ Sbjct: 496 EAQQLAALEAAGLGSFDELSDEAVTLTGTTALSLPGPEES--------YEQMLNSVKGLV 547 Query: 536 EINEERFAKILRKWARSE 553 + R ++++++W E Sbjct: 548 ADDPGRVSQVIKRWINEE 565 >gi|238764898|ref|ZP_04625838.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] gi|238696917|gb|EEP89694.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] Length = 572 Score = 353 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 128/586 (21%), Positives = 230/586 (39%), Gaps = 61/586 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L I + +A + SP Y LY L D I Sbjct: 10 NRENTFTTTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F +++ RALEGE+ARTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQVNYQRALEGELARTISTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPASVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIETILAPMVGSGNIHAQVTAQVDFSSREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------------PLPRSLE 327 N P V+ + Sbjct: 308 GTNVGGVPGALSNQPPVTPVAPIEVPPATPAAGAGAPANTANAANRPAATTTAARQTATS 367 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 + + ++ +N+E++ T ++RLS+AVVVN G LA+ Sbjct: 368 SNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGT----DKAGKPIALSKEQLAQ 423 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 + + A G ++ RGDT+ + + F ++ F +IN +L+ Sbjct: 424 VESLTREAMGFSTDRGDTLNVVNTPFSATGDDTGSSLPFW---QQQSFFDQLINIGRYLL 480 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 L+ L +R L + L + A T + +AL NQ Sbjct: 481 ILLVAWILWRKLVRPLMEKKQVADKATASVNTLV--QTAQASETAKQTKEELALRKKNQQ 538 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + R+ + + + A ++R+W ++ Sbjct: 539 RVSA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 571 >gi|187478210|ref|YP_786234.1| flagellar MS-ring protein [Bordetella avium 197N] gi|115422796|emb|CAJ49324.1| flagellar M-ring protein [Bordetella avium 197N] Length = 544 Score = 352 bits (903), Expect = 8e-95, Method: Composition-based stats. Identities = 113/536 (21%), Positives = 204/536 (38%), Gaps = 61/536 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + P Y L+ L+ D I AL++ N+ +R SDNG +I VP + V R+ LA QG Sbjct: 46 WSREPDYKVLFSNLDDRDGGAIVTALTQMNVPYRFSDNGGAILVPGNRVYDLRMQLAGQG 105 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG + F +++ RALEGE+AR+I+++ + ARVH+ +P Sbjct: 106 LPRGGS-VGFELMDNA-RFGASQFAEQVNYQRALEGELARSIEAMHTVQHARVHLALPRQ 163 Query: 162 GSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PT SV++ AI LVA++VP+L +V+++D G+LL+A Sbjct: 164 SLFVRDRQPPTGSVLLTLYPGRSLAEAQVSAIAWLVASSVPDLSADNVSIVDQNGRLLSA 223 Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 E + + + + I L +G N + E++ ++ +Y Sbjct: 224 PAGEGRGLDADQMRFAREYEQRTVERILTILNPLVGPGNVHAQASVEVDFARREETSEIY 283 Query: 279 DPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327 P+ + ++ S+ ++ S N P + + Sbjct: 284 RPNQEPGQAAVRSQQTSDSRQTNASPAAGVPGALSNQPPAATQAPLTNPPAPAQPQAQPA 343 Query: 328 ---------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 ++++ NYE++ +++RLS+AVVVN + Q Sbjct: 344 APQQAAQISGNERRDATINYEVDRTISHVKQPVGQVKRLSVAVVVNHLPNKDGD----PQ 399 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 L+++ +V A G + RGD++ + + F + Sbjct: 400 ALPPEELSKLTTLVREAMGYSEARGDSLNLVNSQFNDAPPTVPLWRDP--------DLIA 451 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 I + V LL+ F +R + + + D Sbjct: 452 TIKTALGWVFGLLIAFWAYRRIRPIVSEYLYPQI------------------------DP 487 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 A+ + +I + + + R M + A +LR W + Sbjct: 488 EAVAAERAEIEREAVAAARAKEVNRYEDNLQRARDMATKDPRAVAMVLRAWMTKDE 543 >gi|88704287|ref|ZP_01102001.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71] gi|88701338|gb|EAQ98443.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71] Length = 574 Score = 352 bits (903), Expect = 8e-95, Method: Composition-based stats. Identities = 130/580 (22%), Positives = 225/580 (38%), Gaps = 38/580 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI + L F + TR L L + I L M +V P+Y LY + D N Sbjct: 4 AIDNNLFNRFSGFSRQPATRQLALLIGLAASIALAMGMVQWVVEPNYKPLYGTMAPEDTN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + +L +D+R+ ++VP+ V +AR+ LA G P G+E + G Sbjct: 64 DVIASLEANGMDYRMDQRTGMVAVPAGEVHRARLLLAGDGYPR-GEGVGFESLYREQEIG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 L+SFM++ RALE E+ARTI ++ + ARVH+ M +F + +P ASVM+ Sbjct: 123 LSSFMEQARFHRALESELARTISALDNVRGARVHLAMAKQSAFLRQREQPAASVMLNLYA 182 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAI 237 + I HLVA++VPNL+ V+V+D GKLL+ + E + + Sbjct: 183 GRTLNDRQLAGIIHLVASSVPNLESEQVSVVDQQGKLLSQQGRDDEFAFTQDQFQYTRQL 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + I L LG + R+ V A+++ + E Y PD+ R + S Sbjct: 243 ESNLSARIVDILEPILGANAVRAQVAADVDFTRVERTEETYAPDT---RVRSEQTSEETS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRS------------------------LENTDKKE 333 N P + + Sbjct: 300 NQPYGGGVPGTLSNEPPIDTTVTAQQAQPNLGANAGVNTGVNVDATAQLGAIPPARTSRR 359 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 NYE++ L++LSIAVV++ T G + + + E+ +V Sbjct: 360 STVNYEMDKTISHVRETPGTLQKLSIAVVLDYIESTADDGTTTREPMPQERIDEVTSLVR 419 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A G ++ RGDT+++ S F+E ++ S ++ + L+ L+ L + Sbjct: 420 EAVGFDAARGDTVSVISASFVEAPAIEDAVIESSILEE--DWIWQLGKGLLALIVLLSLI 477 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 F+ + L + + G + +A+ M +D + L NQ + Sbjct: 478 FVVVRPLVKFAAVPVPMMQSPQGIQGPDGQAV-AALGGAGMSDDQVTLGGQNQAGLPGTS 536 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +Q + +R A+++R W + Sbjct: 537 GDGG---AGGYQQQLQMARSVAAGEPDRAAQVVRNWVSDD 573 >gi|27355280|dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110] Length = 519 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 131/531 (24%), Positives = 223/531 (41%), Gaps = 18/531 (3%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + +V + F V +P L+ L V D + I L I F + + G+ I Sbjct: 1 MIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKDLERQAIQFELRNEGTIIM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP V + R+ LA GYE+FDK ++ G TSF+Q I +RALEGE+ARTI+ Sbjct: 61 VPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIR 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204 +I I AARVH+V+P+ F + P+AS+++R + AIRHLVA+AV L Sbjct: 120 AIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQIRAIRHLVASAVNGLKP 179 Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 V+++D G+LL + + + +++ +G R + A Sbjct: 180 QRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVEDIVSSVVGSGRARVQLSA 239 Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 + + + +DP+ +V RS + ++ S T+ VTV +P Sbjct: 240 DFDFNKITQTSDKFDPEGRVLRSTQTREE--SSMTADNNGQVTVNNELPGNQQN--NGVA 295 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 + + + K EE +NYEI+ + + ++ R+S+AV+V+ G A Q + Sbjct: 296 AKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKNDKGELAYQDRTKEQ 355 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS---RHFATVIN 441 L I +V +A G + +RGD + + ++ F + F+ +L + Sbjct: 356 LDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIAEPSGFLGMLQFTKDDVMYFVE 415 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 V ++ L+V F+ + L + D + G +A G Sbjct: 416 LGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSGPAASDEAAPAAGQAL------ 469 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + S + I V QS R+ + E N I+R+W Sbjct: 470 ----LPGGAASAIDVATIQGQVHAQSVHRVGELAERNPNETVAIIRQWLTE 516 >gi|238784726|ref|ZP_04628730.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] gi|238714405|gb|EEQ06413.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] Length = 572 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 121/586 (20%), Positives = 231/586 (39%), Gaps = 61/586 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L + + +A + SP Y LY L D I Sbjct: 10 NRDNAFTTTLARLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLSDRDGGEIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F ++I RALEGE+ARTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQINYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIETILAPMVGSGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQTSNSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------------PLPRSLE 327 N P + + Sbjct: 308 GSNVGGVPGALSNQPSATPVAPIEVPQPAPVAGAAGAAANNANAANRPATTTAARSTATS 367 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 + + ++ +N+E++ T ++RLS+AVVVN G LA+ Sbjct: 368 SNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPVALSKDQLAQ 423 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 + + A G ++ RGDT+ + + F + ++ ++N +L+ Sbjct: 424 VESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGLSLPFWKQQSFFDQ---LLNGGRYLL 480 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 L+ L +R + + + ++ Sbjct: 481 ILLVAWILWRKLVRPMIAKKQLADKAAASVNSMVQTAQTAETVKQSKEE----------- 529 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 530 -LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 571 >gi|319787100|ref|YP_004146575.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1] gi|317465612|gb|ADV27344.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1] Length = 573 Score = 352 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 217/565 (38%), Gaps = 22/565 (3%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ + R I + + + F+ P Y LY L+ + Sbjct: 17 EKAASAVVKLQEMQLGRKFGTLLAIALAVAAGLYIFFWSQKPAYTPLYTGLDPKATAEAT 76 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I FRI S+ISVP + AR+ LA GL S G+EL ++ FG++ Sbjct: 77 DLLRAAQIPFRIDQATSAISVPEENLHDARLKLAGSGLTESG-RLGFELMERDPGFGVSQ 135 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E+ RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 136 FVENARYQHALETELVRTISTLRPVRDARVHLAIPKPSAFTRAREAASASVVLELRSGAV 195 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240 +AI HLV++++P+L VTV+D G++++ N+ + V+ + Sbjct: 196 LERNQVDAIVHLVSSSIPDLAPERVTVVDQNGRMISRNGNDSASELSAVQFEQVRRQETS 255 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G + V +++ + +++ + + RS ++S+ + Sbjct: 256 YNQRIRELLEPLTGSGRVNAEVTVDMDFSVTEEARELFNAEPQKLRSEQVSE--NTTAGE 313 Query: 301 QPESAVTVEQNMPH----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 P+ N P + + N+E++ T Sbjct: 314 GPQGIPGATSNTPPGAVAQQNADGTPAPGTVATATAAGNSSRSATRNFELDRTLQHTRQP 373 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++ R++ AV+V+ G+ A Q + LA + ++V A G + RGD +++ + Sbjct: 374 AGRIRRVTAAVLVDHVPRAGGDGKVALQPLSEQELARVQELVRQAVGFDPARGDVVSVVN 433 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F+ + ++ + + L + L + F L R Sbjct: 434 APFVREDAPAAEPLKWWEDPRMRD----IARVLAGALVVLALLFGVLRPSLRQIASPAGA 489 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 K G++ P ++ + +A D++ + + + +S + Sbjct: 490 KKSGSGEASDEPATAEVSLVEDDLDIPALAGDTAQLGLQAPGAPMALP-SSNSYEDRLRN 548 Query: 531 LLHMIEINEERFAKILRKWARSEIE 555 + + +R A++++ W +E Sbjct: 549 AREAVRADSKRVAQVVKDWLGNEAA 573 >gi|239817137|ref|YP_002946047.1| flagellar MS-ring protein [Variovorax paradoxus S110] gi|239803714|gb|ACS20781.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] Length = 560 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 115/538 (21%), Positives = 209/538 (38%), Gaps = 46/538 (8%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY + D I +L + N+ ++ ++ G +I V V + R+ LA Sbjct: 45 FLLWSRAPDYGVLYTNVTDRDGGAIIASLQQMNVPYKFAEGGGAILVARDRVPEVRLKLA 104 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 +QGLP G+EL D FG ++F +++ R LEGE+AR+++SI + +AR+H+ + Sbjct: 105 SQGLPKGGG-VGFELMDN-QKFGTSNFAEQVNYQRGLEGELARSVESIGSVESARIHLAL 162 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + +P+ASV++ AI H+V+++VP+LD VTV+D G L Sbjct: 163 PKPSLFVRDQKKPSASVILTLHRGRSIDEGQVSAIVHMVSSSVPDLDAKSVTVVDQRGNL 222 Query: 217 LTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 L+A L L Q I+ I L +G N R+ V AE++ + E Sbjct: 223 LSAANAGARGLDVSQLKYAQEIEQGYIRRIEAILQPLVGASNVRAQVAAEIDFSVVERTE 282 Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLE----- 327 Y P+ + S+ + S + P N P + Sbjct: 283 ESYKPNQDPRAAAVRSQQSSESMQQGATPPGGVPGALSNQPPQTPSAPITAPPNAAAAAP 342 Query: 328 -------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 + +K+ +NYE++ ++RLS+AVVVN + G+ Sbjct: 343 KAAATATAASTAPGSSRKDTTTNYELDRSIRHVQQGAGGVKRLSVAVVVNHRDTADSAGK 402 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 + + + +I +V A G + RGD++ + + F + F + Sbjct: 403 PGQRALTPAEIEQIRNLVKEAMGFSQERGDSLNVVNSAFAREGGDAEAGPALPFWRDPA- 461 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 + ++ +L+ L F LR L A ++ + P + T Sbjct: 462 NLGLAMSIAQYLLMAGLALFAWFAVLRPLLRKHLAPPAAAVPEAAPAAPGAADDDGTAAQ 521 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 N + + ++ + + A +++ W S Sbjct: 522 NNARLREIERQKADLDYAHQT-------------------ADQDPRLVATLIKHWMNS 560 >gi|51596039|ref|YP_070230.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953] gi|51589321|emb|CAH20942.1| flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953] Length = 570 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 127/584 (21%), Positives = 234/584 (40%), Gaps = 59/584 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L I + +A + SP Y LY L D I Sbjct: 10 NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F ++I RALEGE++RTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329 N P V+ ++ + Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANAATTANANTTATAAKASSSN 367 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 + ++ +N+E++ T ++RLS+AVVVN LA++ Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 + A G ++ RGDT+ + + F + ++ F ++NA +L+ Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L+ L LR + + + + A T + +AL NQ Sbjct: 481 LVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAETVKQSKEELALRKKNQQRV 538 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + R+ + + + A ++R+W ++ Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569 >gi|22126359|ref|NP_669782.1| flagellar MS-ring protein [Yersinia pestis KIM 10] gi|45441380|ref|NP_992919.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108807202|ref|YP_651118.1| flagellar MS-ring protein [Yersinia pestis Antiqua] gi|108812454|ref|YP_648221.1| flagellar MS-ring protein [Yersinia pestis Nepal516] gi|145598582|ref|YP_001162658.1| flagellar MS-ring protein [Yersinia pestis Pestoides F] gi|149366222|ref|ZP_01888257.1| flagellar M-ring protein [Yersinia pestis CA88-4125] gi|153947408|ref|YP_001401259.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758] gi|162421303|ref|YP_001606485.1| flagellar MS-ring protein [Yersinia pestis Angola] gi|165926013|ref|ZP_02221845.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165938662|ref|ZP_02227217.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|166010885|ref|ZP_02231783.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166210437|ref|ZP_02236472.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|167401031|ref|ZP_02306534.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420343|ref|ZP_02312096.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425776|ref|ZP_02317529.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468921|ref|ZP_02333625.1| flagellar M-ring protein FliF [Yersinia pestis FV-1] gi|218928951|ref|YP_002346826.1| flagellar MS-ring protein [Yersinia pestis CO92] gi|229897213|ref|ZP_04512369.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897940|ref|ZP_04513091.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902829|ref|ZP_04517946.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|270486615|ref|ZP_06203689.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294504003|ref|YP_003568065.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|21959343|gb|AAM86033.1|AE013851_5 basal-body MS (membrane and supramembrane)-ring and collar protein [Yersinia pestis KIM 10] gi|45436240|gb|AAS61796.1| flagellar M-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108776102|gb|ABG18621.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|108779115|gb|ABG13173.1| flagellar M-ring protein [Yersinia pestis Antiqua] gi|115347562|emb|CAL20471.1| flagellar M-ring protein [Yersinia pestis CO92] gi|145210278|gb|ABP39685.1| flagellar M-ring protein [Yersinia pestis Pestoides F] gi|149292635|gb|EDM42709.1| flagellar M-ring protein [Yersinia pestis CA88-4125] gi|152958903|gb|ABS46364.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP 31758] gi|162354118|gb|ABX88066.1| flagellar M-ring protein FliF [Yersinia pestis Angola] gi|165913276|gb|EDR31898.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|165922217|gb|EDR39394.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165990229|gb|EDR42530.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166207617|gb|EDR52097.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|166962038|gb|EDR58059.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049420|gb|EDR60828.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055175|gb|EDR64972.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680276|gb|EEO76375.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|229688981|gb|EEO81046.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. India 195] gi|229693550|gb|EEO83599.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|262361812|gb|ACY58533.1| flagellar M-ring protein [Yersinia pestis D106004] gi|270335119|gb|EFA45896.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294354462|gb|ADE64803.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|320015431|gb|ADV99002.1| flagellar M-ring protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 570 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 127/584 (21%), Positives = 234/584 (40%), Gaps = 59/584 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L I + +A + SP Y LY L D I Sbjct: 10 NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F ++I RALEGE++RTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329 N P V+ ++ + Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANTAATANANTTATAAKASSSN 367 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 + ++ +N+E++ T ++RLS+AVVVN LA++ Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 + A G ++ RGDT+ + + F + ++ F ++NA +L+ Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L+ L LR + + + + A T + +AL NQ Sbjct: 481 LVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAETVKQSKEELALRKKNQQRV 538 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + R+ + + + A ++R+W ++ Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569 >gi|300722640|ref|YP_003711930.1| flagellar basal-body MS-ring and collar protein [Xenorhabdus nematophila ATCC 19061] gi|297629147|emb|CBJ89743.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus nematophila ATCC 19061] Length = 574 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 133/592 (22%), Positives = 242/592 (40%), Gaps = 64/592 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +Q F + + + L I + +A ++ SP Y LY L D Sbjct: 6 DVENQKKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWLRSPDYRVLYSNLSDKDGG 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ N+ +R ++NGS+I +P+ V + R+ LA QGLP + G+EL DK FG Sbjct: 66 EIVTQLTQMNVPYRFAENGSAIMIPTEKVHETRLKLAQQGLPKGGAT-GFELLDKE-KFG 123 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 ++ F +++ RALEGE+ART++S+ + +ARVH+ MP F + P+ASV + Sbjct: 124 ISQFSEQVNYQRALEGELARTVESLGPVQSARVHLAMPKPSLFVREQKSPSASVTVGLLQ 183 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238 AI H+V+++V L G+VT++D +G+LLT ++ R++ L Q I+ Sbjct: 184 GRVLDEGQINAIVHMVSSSVAGLPAGNVTIVDQSGRLLTQSDATGRDLNTTQLKYTQEIE 243 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I LA +G N + V A+++ ++ Y P+ ++ SK + SE Sbjct: 244 NRFRHRIETILAPVVGRGNVHAQVTAQVDFSRREETTEEYKPNQPPNQAAVRSKQSSSSE 303 Query: 299 --------------TSQPESAVTVEQNMPHVSDRKVPLPR-------------------- 324 ++QP +A + P+ + Sbjct: 304 QSGGPLVGGVPGALSNQPSAAPSAPIEKPNTNANTNAKDNSDEKPDQQQRNGNNRNNSYE 363 Query: 325 ---SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 S + ++ +E +NYE++ T +ERLS+AVVVN + G + + Sbjct: 364 RMVSNNHNNRYDETTNYEVDRTIRHTQLQAGAVERLSVAVVVNYTMVQGENGPET-KPLM 422 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 LA+I + A G ++ RGD++ +T+ F + Sbjct: 423 PEQLAQIEALTREAIGFSTDRGDSLNVTNTPFNDTTEVIEALPFWQHP------------ 470 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 L L + + + +A+ A Sbjct: 471 ------VLLDKLLDAGRWLLLALAAWLLWRKMIVPQIAKKRAAEKAALDAQKNQQKRSAE 524 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ D + + R+N+ + Q R+ + E + A ++R+W +E Sbjct: 525 TNAEMDEKMRRQMARQRVNAELQSQ---RIRELAEKDPRVVALVIRQWMSNE 573 >gi|118581826|ref|YP_903076.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379] gi|118504536|gb|ABL01019.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379] Length = 528 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 120/561 (21%), Positives = 224/561 (39%), Gaps = 49/561 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + +L + +++A V ++ + F F N Y L+ L D I Sbjct: 3 EGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + ++I+ +G I VP+ +V + R+ LA++GLP G+E+FD+ N FG+T Sbjct: 63 KKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGGG-VGFEIFDRKN-FGMTE 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F+Q+I RAL+GE++RTI ++G+ AR+H+V+P+ F++ TAS++++ + Sbjct: 121 FVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSGRS 180 Query: 185 YKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQ 238 + + I HLVA+++ ++ VTVLDS GK+L + + + Sbjct: 181 LRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIYE 240 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +E I L +G + V A + + E +DP+S RS + S++ + Sbjct: 241 KNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEK-GAT 299 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 V+ N+ K +E NYE++ + L RLS Sbjct: 300 AVNAAGVPGVQTNLGRTGAGGATQAGGAA---KNDETLNYEVSRTTAKIIEPVGALSRLS 356 Query: 359 IAVVVNKGRLTEV------LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +AV+V+ + L +I +V +A G N+ RGD + I ++ Sbjct: 357 VAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGDQLAIQNIP 416 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + Q + + F ++ L+ +G + + + L I Sbjct: 417 FQDTGELGNIETQKWWN---NPFFMSLFKNLLIGLGFMALIIFVIRPLLVSLKIVRPSAR 473 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E S R + L+ Sbjct: 474 E----------------------------SIETVHEISDKLTSAERAQISMQMAEQQNLI 505 Query: 533 HMIEINEERFAKILRKWARSE 553 + + + A+IL+ W + Sbjct: 506 DTAKKDPYQVAQILQNWIGED 526 >gi|260598447|ref|YP_003211018.1| flagellar MS-ring protein [Cronobacter turicensis z3032] gi|260217624|emb|CBA31913.1| Flagellar M-ring protein [Cronobacter turicensis z3032] Length = 571 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 130/582 (22%), Positives = 232/582 (39%), Gaps = 63/582 (10%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + P Y LY L D I L++ Sbjct: 15 VEWLNRLRANPKIPLMVAGAAAVAIIVALVLWAKQPEYRVLYSNLSDQDGGAIVTQLTQM 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI + +DNG+SI VP+ V R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 75 NIPYNFADNGASIMVPAEKVYDLRLRLAQQGLPKGGA-VGFELMDQE-KFGISQFSEQVN 132 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV ++ Sbjct: 133 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTLSLQPGRTLDDGQV 192 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247 A+ H+V++AV L G+VT++D G+LLT + + L ++ I+ I Sbjct: 193 AAVVHMVSSAVAGLPPGNVTLVDQAGRLLTQSGTGARDLNDAQLKYASDVEGRIQRRIES 252 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS---ETSQPES 304 LA +G N + V A+++ ++ E Y P+S + S+ + P Sbjct: 253 ILAPIVGSGNVHAQVTAQIDFSNKEQTEEQYRPNSDPSQMAVRSRQLNTNDQVGAGNPGG 312 Query: 305 AVTVEQNMPHV--------------------------------SDRKVPLPRSLENTDKK 332 N P S ++ ++ Sbjct: 313 VPGALSNQPAPANSAPIDAPAGQNANGQNANGQNANGQNAQRTQSTSTTGASSGPHSSQR 372 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 +E +NYE++ T + ++RLS+AVVVN +L G L +I + Sbjct: 373 DETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYRQL----GNGKPLALTADQLKQIEDLT 428 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A G + +RGDT+ + + F + + +++A +LV ++ Sbjct: 429 REAMGYSDKRGDTLNVVNSPFTASDEAGAELP----FWKQQAFIDQLLSAGRWLVVLIVA 484 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 L A+R + V + + ++D + Sbjct: 485 WLLWRKAVRPQLQRRAEEVKRV------------QEIQQQRQEVEESVEVRLSKDEQTQQ 532 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R R+++ V Q R+ M + + A ++R+W +E+ Sbjct: 533 RRANQRLSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNEL 571 >gi|241763655|ref|ZP_04761705.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN] gi|241367130|gb|EER61496.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN] Length = 561 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 128/566 (22%), Positives = 225/566 (39%), Gaps = 45/566 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + + ++L R++ + L + + + + +AA P Y L+ L D I LS+ Sbjct: 17 WLQRLSTLDRSQRMRLGVGVALLVAVAIAAIVLGRQPDYRVLFANLSDKDGGAIVAQLSQ 76 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ +D G +I +PS V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 77 MNVPYKYADGGGAILIPSDRVHDVRLRLATQGLPK-GSVAGFELM-ESNRFGITQFQERL 134 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187 R LEGE+ R+IQ++S + ARVH+ +P+ F + +P+ASV+ + Sbjct: 135 NFQRGLEGELTRSIQALSSVQGARVHLALPNQNGFFREQQKPSASVLVSLHPGRILDRAQ 194 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMN 244 I HLVA++VP L V+VLD TGKLL+ + + + L VQ I+ + Sbjct: 195 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQSPDTAAGTGVDAQQLLYVQQIEQQYTRR 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--- 301 I L +G +N ++ V AE++ + + P+ + S S+ S Q Sbjct: 255 IMDILEPVVGRNNVKAQVSAEVDFSQTESTSEQHRPNQSPDASAVRSQQVVESNGPQGNP 314 Query: 302 -PESAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIAT 347 P N P + + T K+E NYE++ T Sbjct: 315 LPTGVPGAASNQPPAASTAPINGANPAPTAAGGQQQGALGAGSKRESVINYEVDKTVRVT 374 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++RL+ AVVVN + G++ + L ++ +V G N RGD++ Sbjct: 375 RGGSGAVKRLTAAVVVNYQSAED-KGKTVAKALTPEQLEQMTALVRETIGFNKERGDSVN 433 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F + + ++L + L L++ L AL+ Sbjct: 434 LMNTPFQVDVTPANDVPLWKQPEMLELAKSFAWPVGAVLFAALVLLGLVRPALK------ 487 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A+ D + + + + + Sbjct: 488 --------------GQERPRAIAVAGGSIDALEAEQPERPALPAPAKKDELLPVTPEQLR 533 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + + N A IL+ W E Sbjct: 534 LEEARMLAKENPMAVANILKTWVNGE 559 >gi|186895144|ref|YP_001872256.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+] gi|186698170|gb|ACC88799.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+] Length = 570 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 128/584 (21%), Positives = 236/584 (40%), Gaps = 59/584 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L I + +A + SP Y LY L D I Sbjct: 10 NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F ++I RALEGE++RTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329 N P V+ ++ + Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANAATTANANTTATAAKASSSN 367 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 + ++ +N+E++ T ++RLS+AVVVN LA++ Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 + A G ++ RGDT+ + + F + ++ F ++NA +L+ Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L+ L LR + + S+ + + A T + +AL NQ Sbjct: 481 LVAWILWRKLLRPMLAKKQV--ADNAAASVNNIVQTAQAAETVKQSKEELALRKKNQQRV 538 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + R+ + + + A ++R+W ++ Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569 >gi|288549808|ref|ZP_05968261.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] gi|288317495|gb|EFC56433.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] Length = 543 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 223/543 (41%), Gaps = 51/543 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + SP Y LY L D I L++ NI +R +DNG ++ VP+ V + R+ LA Sbjct: 26 MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 85 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ M Sbjct: 86 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 143 Query: 159 PDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + P+ASV + A+ HLV++AV L G+VT++D +G L Sbjct: 144 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 203 Query: 217 LTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LT + + L ++ ++ I L +G N + V A+++ ++ E Sbjct: 204 LTQSNSAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFANKEQTE 263 Query: 276 IVYDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+ +++ S+ + ++ P N P ++ Sbjct: 264 EQYSPNGNPSQAVMRSRQVNENEQVGGPYPGGVPGALSNQPAPANAAPITTPAANQQNGQ 323 Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 S T + E +NYE++ T + ++RLS+AVVVN L + Sbjct: 324 QNNAQTTSTAASSGPRTSSRNETTNYEVDRTIRHTKLNVGDVQRLSVAVVVNYKTLPDGK 383 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + +I + A G + +RGDT+ + + F Sbjct: 384 ----PLPLTTEQMKQIEDLTREAMGYSEKRGDTLNVVNSPFSSVDETGGELP----FWQQ 435 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 +++A +L+ ++ L +R + + ++ AV Sbjct: 436 QAFIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRRAEAERAAQ-EQQVTRQDTEEAVEVR 494 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L ++ I +NQ + + + R+ M + + A ++R+W + Sbjct: 495 LSKDEQIQQRRANQRMGAEVMS--------------QRIREMSDNDPRVVALVIRQWMGN 540 Query: 553 EIE 555 E E Sbjct: 541 EHE 543 >gi|318605263|emb|CBY26761.1| flagellar M-ring protein FliF [Yersinia enterocolitica subsp. palearctica Y11] Length = 559 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 116/538 (21%), Positives = 219/538 (40%), Gaps = 48/538 (8%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + SP Y LY L D I L++ NI +R +DNG ++ +P+ V + R+ LA Sbjct: 45 MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP + G+EL D+ FG++ F +++ RALEGE+ARTI ++ ++ RVH+ MP Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162 Query: 160 DMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + PTASV ++ AI ++V+++V L +VTV++ TG+LL Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVNQTGRLL 222 Query: 218 TANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 T ++ + L +++ + I LA +G N + V A+++ +++ + Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV------------- 320 Y P+ + S+ SE N P + Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342 Query: 321 -----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 + + + ++ +N+E++ T ++RLS+AVVVN G Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAG 398 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 LA++ + A G ++ RGDT+ + + F + + Sbjct: 399 KPIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPS---F 455 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 F ++N +L+ L+ L +R L + + ++ Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPLIAKKQEADKAAASVNNIVQAAQTTETAKQTKE 515 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 516 E------------LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558 >gi|2832233|gb|AAC01568.1| M-ring [Brucella abortus] Length = 540 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 194/507 (38%), Positives = 293/507 (57%), Gaps = 3/507 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSYGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+K+++T D Y ++RLSIA Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQ 506 P + + Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPAA 514 >gi|21231374|ref|NP_637291.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768573|ref|YP_243335.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991617|ref|YP_001903627.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris str. B100] gi|21113037|gb|AAM41215.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573905|gb|AAY49315.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733377|emb|CAP51578.1| Flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv. campestris] Length = 573 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 116/567 (20%), Positives = 230/567 (40%), Gaps = 27/567 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F S+ TR L + ++I + + +A F+ P Y LY L+ + Sbjct: 15 EKAGQWFDRIRSMQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQALYTGLDDKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I F+I + +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPFKIDQSTGAISVPQDRLYDARLKLAGSGLTGQQTGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G V +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVS--DSSTSAT 312 Query: 301 QPESAVTVEQN-------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 P+ N P + K NYE++ T Sbjct: 313 GPQGPPGATSNSPGQPPAPAATAGAPGAPAAGQAATPAAPTESSKSATRNYELDRTLQHT 372 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT++ Sbjct: 373 RQPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVS 432 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F+ + + + + LV V L + F + R Sbjct: 433 VMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTGT 488 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 A K + P ++ D+ + +D ++ + I + + Sbjct: 489 AAVKEKHKKGGNDGTPQS---ADVRMVDEDDDLMPRLEEDTAQIGQDKKLPIALPDAYEE 545 Query: 528 DLRL-LHMIEINEERFAKILRKWARSE 553 +RL ++ + +R A++++ W SE Sbjct: 546 RVRLAREAVKADSKRVAQVVKGWVASE 572 >gi|319406987|emb|CBI80624.1| Flagellar M-ring protein [Bartonella sp. 1-1C] Length = 554 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 201/548 (36%), Positives = 311/548 (56%), Gaps = 11/548 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + LG R++ L V L + + F++ P Y+ LYV L DVNR+ +A Sbjct: 9 LSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYETLYVGLSRDDVNRMGMA 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LSEA I F +S +G ++ VP +AR+ LA +GLP+S+ N+GYELFD + S GLTSFM Sbjct: 69 LSEAGIAFDVSSDGGTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMGSLGLTSFM 127 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 QEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR + + Sbjct: 128 QEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIRTNSSFSVE 187 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEIEMNI 245 A++IR LVAAAVP+L+ VTV+D+ G+LL + N ++ + Q + +I+ NI Sbjct: 188 FAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQVASQIDANI 247 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S+ ++ A Sbjct: 248 RKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADSQNNRNSDA 307 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V VEQN+P RS + D++EE +NYEIN+K+I+T D Y +++L++A+VV++ Sbjct: 308 VGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKLAVAIVVDR 367 Query: 366 GRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 RL G + + ++ + I ++V+ A G++ +RGD I +T++DF+ N + + Sbjct: 368 ARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGNSEADMAPI 427 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 Q LSR+ + +IN + ++ L+ FLG+ L R Sbjct: 428 QEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENSANAVAGLGNI 487 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + ++N + S + + + RL MI ++EERFA Sbjct: 488 PALEHQYQDNAEFGGVTGTNN--------DTLSNLRNRMRVPPQNRLEQMIAMDEERFAG 539 Query: 545 ILRKWARS 552 +LR+W Sbjct: 540 VLREWVHD 547 >gi|319409176|emb|CBI82820.1| Flagellar M-ring protein [Bartonella schoenbuchensis R1] Length = 555 Score = 351 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 211/552 (38%), Positives = 323/552 (58%), Gaps = 11/552 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L L ++ LG R++ L V + + + F++ P Y+ LY+ L DVNR Sbjct: 5 LLAFLSSSGQALQKLGVKRLVALGLVGITLFGTILFSSFYLTRPSYETLYIGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + VAL E I F +S +GSSI VP KAR+ LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGVALGETGIAFDVSSDGSSIQVPVGQAEKARMFLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 124 TSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIRTDGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEI 241 +SA++IR LV+AAVP+L+ VTV+D+ G+LL + N ++ + Q + +I Sbjct: 184 FSAESAQSIRQLVSAAVPSLEASSVTVMDTRGQLLASGVDAANGASVRMALLEQQVASQI 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI K L +LG+D+F+++V +L+ + QQI E V+DP+S+V RS+R +D S+ S+ Sbjct: 244 DANIRKQLVPYLGLDHFQTSVQVDLDTNRQQINETVFDPESQVVRSVRSVRDQADSQNSR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 AV VEQN+P RS + D++EE +NYEIN+K I+T D Y +++L++A+ Sbjct: 304 NNDAVGVEQNIPQEEIANGGGERSTDKKDRREETTNYEINSKIISTVKDGYSVKKLAVAI 363 Query: 362 VVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VV++ RL G + D + I+ + I ++V+ A G++ +RGD I +T++DF+ + Sbjct: 364 VVDRARLALAKGNNGDSESFINDEINRIQQMVATAAGLDPKRGDVINVTAVDFMGYSDKD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 +Q LS + +T +N L +V LL+ FLG+ L R G K++ Sbjct: 424 LTPMQTPIWKSLSPYLSTFVNGLALVVAVLLILFLGVRPLMREMR--------EGQKALD 475 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + + + ++ I + + + S + RL MIEI+E+ Sbjct: 476 NEQNALAGLQDVPALENQSNINGEFGGIAGAKDDTLNDLRSRMRVAPQNRLEKMIEIDEQ 535 Query: 541 RFAKILRKWARS 552 RFA++LR+W Sbjct: 536 RFAEVLREWVND 547 >gi|330502763|ref|YP_004379632.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] gi|328917049|gb|AEB57880.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] Length = 594 Score = 351 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 119/586 (20%), Positives = 232/586 (39%), Gaps = 55/586 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + R L L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGMDATQVVETL 84 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + + ID+ I N ++ V + + +AR+ LAA G + ++ G+E+ D+ G + FM+ Sbjct: 85 TASGIDYTIEPNSGALLVKADDLARARMRLAAAGAAPTDTSVGFEILDREQGLGTSQFME 144 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 R LEGE+ART+ S++ + AARVH+ MP F + +P+ASV++ Sbjct: 145 ATRYRRGLEGELARTVASLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243 AI +LVA +VP LD G VTV+D G LL+ + E + GK + ++ Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMEGLFTQ 264 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ L LG +++ V A+++ + + +++PD RS + + ++S + P+ Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323 Query: 304 SAVTVEQNMP----------------------------------HVSDRKVPLPRSLENT 329 N P P+ Sbjct: 324 GVPGALSNQPPGPAAAPQQAAGAAAPAGPVAAGQPLVDANGQQIMDPATGQPMLAPYPAD 383 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 +++ N+E++ T +L RLS VV ++ R+ G + LA Sbjct: 384 KREQSTRNFELDRSISYTRQQQGRLRRLSVAVVVDDQVRVDPATGETTRVPWTADDLARF 443 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V + G ++ RGD++++ + F + + F ++ ++ ++ Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPF----YTQPWFWDIVKQVLGVLF 499 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L++ F L + K G A G + +D ++L + Sbjct: 500 ILVLVFGVLRPVLNNITGGGRGKDLAGSG---DVELGEMAGLDGELSDDRVSLGGPQSIM 556 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + ++ + R A+++++W S+ Sbjct: 557 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINSDE 594 >gi|269139487|ref|YP_003296188.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Edwardsiella tarda EIB202] gi|267985148|gb|ACY84977.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Edwardsiella tarda EIB202] gi|304559376|gb|ADM42040.1| Flagellar M-ring protein FliF [Edwardsiella tarda FL6-60] Length = 572 Score = 351 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 122/581 (20%), Positives = 222/581 (38%), Gaps = 59/581 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + + L V I + + + +P Y LY + D I L Sbjct: 18 NSIKAILERVRANPKIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQL 77 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++NG+++ VP+ V R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 78 TQMNIPYRFANNGATLMVPADKVYDTRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 135 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185 +I RALEGE+ARTI+++ +V+ARVH+ MP F + +P+ASV + Sbjct: 136 QINYQRALEGELARTIETLGPVVSARVHLAMPKPSLFVREQKQPSASVTLTLEPGRALDD 195 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMN 244 AI ++V+++V L G+VTV+D G LLT + R++ L ++ ++ Sbjct: 196 GQINAIVYMVSSSVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRR 255 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL---SKDAQRSETSQ 301 I L LG N + V A+L+ +++ + Y P+ ++ + +S Sbjct: 256 IETILQPMLGSGNVHAQVTAQLDFASREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQL 315 Query: 302 PESAVTVEQNMPHVSDRKVPLP---------------------------RSLENTDKKEE 334 N P S +++E Sbjct: 316 NGGVPGALSNEPAPPATGNIDKPRSAQGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDE 375 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +NYE++ T +ERLS+AVVVN + + + +IN +V Sbjct: 376 TTNYEVDRTIRHTQARAGNIERLSVAVVVNYAT----DTKGKEIALSQEKMDQINNLVRE 431 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A G + RGDT+++ + F + + +L+ L+ Sbjct: 432 AMGFSQSRGDTLSVVNTPFNSVEDNGGELP----FWQKQSFIDLLTTLGRYLLVALVAWL 487 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 L ++ + + P + A Q + Sbjct: 488 LWRKLVKPMLTKQQRAAAAAQQRVDAPPLSVQPA----------------KQPSNEELQQ 531 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ R+ M E + A ++R+W +E + Sbjct: 532 RRKLQQRSTAEAQTERVREMAEQDPRVVALVIRQWMSTEQQ 572 >gi|253998468|ref|YP_003050531.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4] gi|253985147|gb|ACT50004.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4] Length = 576 Score = 351 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 119/549 (21%), Positives = 222/549 (40%), Gaps = 50/549 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y L+ D I +L + NI ++ S++G++I VP+S V + R+ LA Sbjct: 44 FWLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLA 103 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 AQGLP N G+EL + FG++ F++++ R LEGE+ R+IQ+IS + AR+H+ + Sbjct: 104 AQGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAI 161 Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + +PTASV++ + AI HLVA++VP L + +VTV+D G L Sbjct: 162 PKPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNL 221 Query: 217 LTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 L+ + N+ L + +Q I + +A +G N + AE++ TQ+ Sbjct: 222 LSDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQ 281 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLEN-- 328 Y P+ + S+ + S+++ P N P N Sbjct: 282 AAETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAG 341 Query: 329 ------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +K +NYE++ ++RL++AVVVN Sbjct: 342 APGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 401 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 ++ + G+ ++ D+ EI+ + A G N RGD++T+ + F Q+ + Sbjct: 402 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGEQIEAIPDL 461 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + + L+ L+ + + + D K+ + Sbjct: 462 PLWKQPENIEMAKEWLKMAAGLLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDAAVV 521 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + G + + + ++ + +Q+ + + N + A Sbjct: 522 TLTGAAEGAEGENMVGVP--------------RKLAAKGYEQNLEAAKQLAKENPKLVAS 567 Query: 545 ILRKWARSE 553 ++ W E Sbjct: 568 LVTNWVSKE 576 >gi|238798572|ref|ZP_04642049.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] gi|238717592|gb|EEQ09431.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969] Length = 572 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 122/586 (20%), Positives = 233/586 (39%), Gaps = 61/586 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L + + +A + SP Y LY L D I Sbjct: 10 NRDNAFTTTLARLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLSDRDGGEIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F +++ RALEGE+ARTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIETILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQTSNSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------------PLPRSLE 327 N P + + Sbjct: 308 GSNVGGVPGALSNQPSATPVAPIEVPQPAPAAGAAGATANNANAANRPAATTAARSTATS 367 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387 + + ++ +N+E++ T ++RLS+AVVVN G LA+ Sbjct: 368 SNSRHDQTTNFEVDRTIRHTQQQAGIVQRLSVAVVVNYGS----DKAGKPVALSKDQLAQ 423 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 + + A G ++ RGDT+ + + F + ++ F ++NA +L+ Sbjct: 424 VESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGSSLPFW---QQQSFFDQLLNAGRYLL 480 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 L+ L +R + + + ++ Sbjct: 481 ILLVAWILWRKLVRPMITKKQIADKAAASVNSMVQTAQTAETVKQSKEE----------- 529 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + Q R+++ V Q R+ + + + A ++R+W ++ Sbjct: 530 -LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 571 >gi|319898649|ref|YP_004158742.1| flagellar M-ring protein [Bartonella clarridgeiae 73] gi|319402613|emb|CBI76158.1| Flagellar M-ring protein [Bartonella clarridgeiae 73] Length = 557 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 201/552 (36%), Positives = 312/552 (56%), Gaps = 8/552 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 L L + LG R++ L + L + + F++ P Y+ LYV L DVNR Sbjct: 5 FLAFLSSSGNALHKLGAKRLIALGIIGLTLFGTILFSSFYLTRPVYETLYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL E I F +S +GS++ VP +AR+ LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGMALGEVGIAFDVSADGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 124 TSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIRTNGG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEI 241 +SA++IR LVAAAVP+L+ VTV+D+ G+LL + N ++ + Q + +I Sbjct: 184 FAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGTSMMMASLEQQVASQI 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S+ ++ Sbjct: 244 DANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADSQNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y +++L++A+ Sbjct: 304 NSDAVGVEQNIPQEEIANGSGERSTDKKDRREETTNYEINSKTISTVSDGYSVKKLAVAI 363 Query: 362 VVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VV++ RLT + + ++ + I ++V+ A G++ +RGD I +T++DF+ + + Sbjct: 364 VVDRARLTLPDSTKPTSESALNEEINRIQQMVATAAGLDPKRGDIINVTAVDFIGHTESD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 VQ+ +LSR+ + +IN + ++ LL+ FLG+ L R Sbjct: 424 MIPVQMPLWKLLSRYTSALINGVALVIAVLLILFLGVRPLMREMREGKKALENSKNAMAD 483 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + S + + + + + RL MI ++EE Sbjct: 484 LENIPALEHQYQANAEF-----SGITGTSDDTHDALHNLRNRMRVPPQNRLEQMIAMDEE 538 Query: 541 RFAKILRKWARS 552 RFA +LR+W Sbjct: 539 RFAGVLREWIND 550 >gi|313200543|ref|YP_004039201.1| flagellar m-ring protein flif [Methylovorus sp. MP688] gi|312439859|gb|ADQ83965.1| flagellar M-ring protein FliF [Methylovorus sp. MP688] Length = 580 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 119/549 (21%), Positives = 223/549 (40%), Gaps = 50/549 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y L+ D I +L + NI ++ S++G++I VP+S V + R+ LA Sbjct: 48 FWLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLA 107 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 AQGLP N G+EL + FG++ F++++ R LEGE+ R+IQ+IS + AR+H+ + Sbjct: 108 AQGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAI 165 Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + +PTASV++ + AI HLVA++VP L + +VTV+D G L Sbjct: 166 PKPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNL 225 Query: 217 LTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 L+ + N+ L + +Q I + +A +G N + AE++ TQ+ Sbjct: 226 LSDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQ 285 Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLEN-- 328 Y P+ + S+ + S+++ P N P N Sbjct: 286 AAETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAG 345 Query: 329 ------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +K +NYE++ ++RL++AVVVN Sbjct: 346 APGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 405 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 ++ + G+ ++ D+ EI+ + A G N RGD++T+ + F +Q+ + Sbjct: 406 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGDQIEAIPDL 465 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + + L+ L+ + + + D K+ + Sbjct: 466 PLWKQPENIEMAKEWLKMAAGLLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDAAVV 525 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + G + + + ++ + +Q+ + + N + A Sbjct: 526 TLTGAAEGAEGENMVGVP--------------RKLAAKGYEQNLEAAKQLAKENPKLVAS 571 Query: 545 ILRKWARSE 553 ++ W E Sbjct: 572 LVTNWVSKE 580 >gi|92114078|ref|YP_574006.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM 3043] gi|91797168|gb|ABE59307.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM 3043] Length = 594 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 122/550 (22%), Positives = 203/550 (36%), Gaps = 47/550 (8%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + +P Y LY L +D +I L + + S+NG ++ VP+ V K R+ LA Sbjct: 54 LLMWARAPEYRVLYSTLTDADGGKIVSELDSMGVPYEFSENGQALLVPADQVNKLRLQLA 113 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP +S GYEL D+ SFG++ F + + RALEGE+ARTI+ + + ARVH+ M Sbjct: 114 EQGLPEASG-VGYELMDE-QSFGISQFTEHVNYQRALEGELARTIEDLGPVSKARVHLAM 171 Query: 159 PDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 F + +ASVM+ +AI H+V+++V L + DV V+D TG+L Sbjct: 172 AKPSVFVRESEPASASVMLDLQRGRVLGEGQVQAIMHMVSSSVSELAISDVAVVDQTGRL 231 Query: 217 LTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 L+ G L V ++ I LA LG N ++ V A+L+ ++ Sbjct: 232 LSPASDGNEALNGSQLDYVARVERNYAERIESILAPILGARNVKAEVSAQLDFSEREGTS 291 Query: 276 IVYDPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSDRKV------------ 320 Y P+ + S+ + N P + Sbjct: 292 ETYGPNQPPNEAAVRSEQTSLSYSGDGDLAMGIPGALSNQPPGTAASPINAPQEDDAGDG 351 Query: 321 ------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + ++ NYE++ H+ +ERL+ A+V Sbjct: 352 EGEDAQDDGNQDEDGEATTQENATLGRTSRDNTINYEVDRTVEHIQHETGTIERLNAAIV 411 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN + G D +A I + A G + RGD + + + F + Sbjct: 412 VNYRDGVDEDGNPTRVPLSDQEIANIRSLAQQAIGFSQARGDQLEVVNSPFDDTS-EQRP 470 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 +L T+ L+ + L + F L L + A + + Sbjct: 471 EPAWWESPLLWSLATTLGQYLLIGLVALFLWFKVLRPLIQRQTERPAFTPATAAPAGAAG 530 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + A T + Q S +Q+ + + + + Sbjct: 531 GAEAYAATAAEGTGAEEEPPAPPQKRRERR--------SASYEQNLRDVREIAQEDPRLV 582 Query: 543 AKILRKWARS 552 A I+R W S Sbjct: 583 AMIVRGWMSS 592 >gi|290475703|ref|YP_003468592.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus bovienii SS-2004] gi|289175025|emb|CBJ81828.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Xenorhabdus bovienii SS-2004] Length = 569 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 126/585 (21%), Positives = 225/585 (38%), Gaps = 56/585 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +Q F + + + L I + +A ++ SP Y LY L D Sbjct: 7 DVENQNKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWMRSPDYRVLYSNLSDKDGG 66 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ NI +R ++N S++ +P+ V +AR+ LA QGLP + GYEL DK FG Sbjct: 67 EIVTQLTQMNIPYRFAENSSALMIPADKVHEARLKLAQQGLPKGGA-VGYELLDKE-KFG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 ++ F +++ RA EGE++RTI+S+ + +ARV + +P F + PTASV +R Sbjct: 125 ISQFSEQVNYNRAKEGELSRTIESLDPVESARVILSIPKPSLFVREQKSPTASVTVRLLQ 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQ 238 AI HLV++ V L +V ++D +G+LLT + ++ L +Q ++ Sbjct: 185 GRTLDEGQVNAIAHLVSSGVAGLPPSNVKIVDQSGRLLTQADANGLDLNTTQLKYIQEVE 244 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I L +G N + V A+L+ ++ Y P+ + LSK + SE Sbjct: 245 KRFQHRIETILTPVVGRGNVHAQVTAQLDFSRREQTAEEYKPNQPPNEAAVLSKQSSSSE 304 Query: 299 TSQP---ESAVTVEQNMPHVSDRKVPLPR---------------------------SLEN 328 S N P + + Sbjct: 305 QSGGSLVGGVPGALSNQPSAAPSAPIEKPNPDTKGKGDEKSDQNRNSTYNNYERLVNNSR 364 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++ +E NY++ T +ERLS+AVV+N G + L++I Sbjct: 365 NNRHDELINYQVGKTISHTQLQVGAVERLSVAVVINYATTQGENGPET-KALTPEQLSQI 423 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G +++RGD++ + + F + + +L+ Sbjct: 424 EALTREAMGFSTKRGDSLNVVNTPFNDTAEVIEPLP----FWQHPVLLEKTLELGRWLLL 479 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L+ L + A + + L L Sbjct: 480 ALVAWLLWRKMIVPQIAKKRAAEKAALNAQKNQQKQQAPESNAELDEKMRRKLA------ 533 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R+N+ + Q R+ + E + A ++R+W +E Sbjct: 534 -------RQRVNAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 568 >gi|52841987|ref|YP_095786.1| flagellar MS-ring protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359304|ref|YP_001250511.1| flagellar basal body M-ring protein FliF [Legionella pneumophila str. Corby] gi|52629098|gb|AAU27839.1| flagellar basal body M-ring protein FliF [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281077|gb|ABQ55165.1| flagellar basal body M-ring protein FliF [Legionella pneumophila str. Corby] gi|307610459|emb|CBX00030.1| flagellar M-ring protein [Legionella pneumophila 130b] Length = 544 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + ++++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337 + + N P + +N + + N Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + F +VI + + L + F Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQIGGALFILAILFGV 475 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L + + + + T + I+ Sbjct: 476 LRPMLKTLASNK-----------DMDQATDNQDTGDFTLDGKISFR-------------- 510 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + + L +++ +R A++++ W Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|54297673|ref|YP_124042.1| flagellar MS-ring protein [Legionella pneumophila str. Paris] gi|53751458|emb|CAH12876.1| Flagellar M-ring protein [Legionella pneumophila str. Paris] Length = 544 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEIMTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + ++++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337 + + N P + +N + + N Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + F +VI + + L + F Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQIGGALFILAILFGV 475 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L + + + + T + I+ Sbjct: 476 LRPMLKTLASNK-----------DIDQATDNQDTGDFTLDGKISFR-------------- 510 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + + L +++ +R A++++ W Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|54294647|ref|YP_127062.1| flagellar MS-ring protein [Legionella pneumophila str. Lens] gi|53754479|emb|CAH15963.1| Flagellar M-ring protein [Legionella pneumophila str. Lens] Length = 544 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEILTVLERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSTGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + ++++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337 + + N P + +N + + N Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + F +VI + + L + F Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFLSVIKQIGGALFILAILFGV 475 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L + + + + T + I+ Sbjct: 476 LRPMLKTLASNK-----------DMDQATDNQDTGDFTLDGKISFR-------------- 510 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + + L +++ +R A++++ W Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|126665015|ref|ZP_01735998.1| flagellar M-ring protein [Marinobacter sp. ELB17] gi|126630385|gb|EBA01000.1| flagellar M-ring protein [Marinobacter sp. ELB17] Length = 569 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 114/560 (20%), Positives = 227/560 (40%), Gaps = 36/560 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + F L R + L + + L +A + P+Y + L + ++ L Sbjct: 27 SRAFMGFNRLDLLRQIGLMVGLAASVALGVAVVLWAQEPNYQPVLGDLSSYNPQDVTSIL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ID+++ ++ V + V AR+ LAA+G+ + G+EL D+ G + +M+ Sbjct: 87 DSSGIDYKMDPRTGALLVVADQVYNARLRLAAEGV-TDQKTLGFELLDQDRGLGTSQYME 145 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 I+ R LEGE+ARTI S+ G+ +ARVH+ +P+ F + P+ASV + + Sbjct: 146 TISYRRGLEGELARTIASMRGVRSARVHLAIPERSVFIRDAREPSASVFLEVFAGRRPEQ 205 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEM 243 AI +LVA +VP + VTV+D G LLT + E + ++ + Sbjct: 206 EYIAAIVNLVAGSVPMMTQSGVTVVDQNGNLLTGADAETDTDRMSDQYDYTDRVEERLSR 265 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 ++ ++ +G +R+ V A+L+ + + E +++P+ + RS +RS P Sbjct: 266 RVSSLISPIVGEGRYRTEVSADLDFSSVERAEELFNPEQQAVRSE-RQLTERRSAGDGPI 324 Query: 304 SAVTVEQNMPHVSDRKVPL-----------PRSLENTDKKEEQSNYEINTKSIATTHDNY 352 N P + P + E NYE++ + Sbjct: 325 GIPGALSNQPPANATVPQQANAGANADGAEPAPAPVDVRSESTRNYEMDRTVSYVRQELG 384 Query: 353 KLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++RL++A+ V+ ++ G + + L ++ +V A G ++ RGD++T+ + Sbjct: 385 RIKRLTVALAVDDIKVVNADTGAVTYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNT 444 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F Q+ + F ++ L+ + L++ L + + Sbjct: 445 AFAPEQVLEYDAPRFWQQP----WFWDLMKQLLAGLVVLVLVLGLLRPTLKNLASGNRGL 500 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 G G D I S + ++ +L ++ + L Sbjct: 501 AGSG--------------NEGYGDLDGIEGGDSLRRAMANQDDLLLPGSTGGYDRQLNAL 546 Query: 532 LHMIEINEERFAKILRKWAR 551 +I + R A+++R+W Sbjct: 547 KGLIAEDPARVAQVMRQWVN 566 >gi|291613068|ref|YP_003523225.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1] gi|291583180|gb|ADE10838.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1] Length = 546 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 120/560 (21%), Positives = 232/560 (41%), Gaps = 39/560 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + + L L + + L + +P Y LY + D + +L Sbjct: 11 SLTRLLFGMPSQQKLGLIVAVAATVALLAGLFMWGQTPDYRVLYANMSERDGGAVIESLQ 70 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + NI ++ + G ++ VP+ V + R+ +AA+GLP G+EL + FG + F+++ Sbjct: 71 QQNIPYKFT-EGGTLMVPADRVYEVRLQMAAKGLPK-GGTVGFELM-ENQKFGTSQFLEQ 127 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYK 186 + RALEGE++R++++I+ + +ARVH+ +P F K +P+ASV++ RA N Sbjct: 128 VNYQRALEGELSRSVETIASVASARVHLAIPKQSVFVKEQQKPSASVILSLRAGNSLDEG 187 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243 AI HL++++VPN++ +VTV+D +G LL+ + E+ + L V+ I+ + Sbjct: 188 QVSAIVHLISSSVPNMNAQNVTVVDQSGTLLSSARDSNAEQLMDATQLKYVRQIEQDYVK 247 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD--AQRSETSQ 301 I L GV N R+ V A L+ + + P+ ++ S ++ T+ Sbjct: 248 RIEDILIPITGVQNVRAQVTASLDFSQTEQTAETFRPNQPPNQAAVRSLQTLETQNGTTS 307 Query: 302 PESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P V KE +NYE++ T Sbjct: 308 TGGVPGALSNQPPVPATAPIVTPASAVVAAAGTAGNMHKELTTNYEVDRTIQHTKLPVGS 367 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLSIAVVVN T G++ + D+ A+I +V G +++RGD++ + + F Sbjct: 368 IKRLSIAVVVNNPSTTGKDGKATSRPYTDAEKAQITALVKETVGFDAKRGDSLNLLNSAF 427 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 E Q + T D ++ + L+ G + F + + + A + Sbjct: 428 NEQQEIIAETPMWKQPDTIAM-AKDIFKYLLIAGGIGFLLFGIIKPAFKTISEQSAAQET 486 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + A ++ ++ + + Sbjct: 487 AMMSAAQHGQISHQAGNAAGQ--------------------YAAQQSASSYEDNLQLAKQ 526 Query: 534 MIEINEERFAKILRKWARSE 553 + + + + A ++++W E Sbjct: 527 LAKDDPKIVATVVKEWVNKE 546 >gi|322421735|ref|YP_004200958.1| flagellar M-ring protein FliF [Geobacter sp. M18] gi|320128122|gb|ADW15682.1| flagellar M-ring protein FliF [Geobacter sp. M18] Length = 524 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 125/559 (22%), Positives = 233/559 (41%), Gaps = 46/559 (8%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + +L + L++ V L ++ F A N Y L+ L D I Sbjct: 3 EGLKKLLEPFLALSAGKRLVVGGVALASLLAFAALITVANKTDYRPLFANLTSEDAGEIV 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L E + ++I+ +G +I VPS V R+ +A+ GLP GYE+FD+ N FG+T Sbjct: 63 KKLKEQKVPYQIAADGKAIMVPSDKVYDLRLSMASDGLPQGGG-IGYEIFDRKN-FGMTE 120 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182 F+Q++ RAL+GE++RTI I+G+ +ARVH+ +P+ F+ TASV+++ + Sbjct: 121 FVQKLNYQRALQGELSRTISQIAGVESARVHLAIPEKTLFKDAEKPATASVVLKMKSNRM 180 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQH 239 + I HLVA+++ +D VTVLDS GK+L+ ++ + G + + Sbjct: 181 LREAEVQGIVHLVASSIEGMDPEQVTVLDSRGKMLSGNTPSDTASKLTGSRQETQRNFEK 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + L +G + V A + + E YDP+S RS + S++ T Sbjct: 241 TQEEKLQTLLDRVVGSGKCVARVSAAFDFKQVEKYEERYDPESAAVRSEQRSEEK-GGVT 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + V+ N+ + K +E NYE++ + L ++S+ Sbjct: 300 ATASGVPGVQSNLGRSAPGAPGQTGGG---SKTDETLNYEVSRSTARIIEPVGALSKVSV 356 Query: 360 AVVVNKGR----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 AV+V+ + Q + + +I +V +A G ++ RGD +T+ ++ F E Sbjct: 357 AVLVDGKYDLPAGAKPGATPKYQPRTPDEMQKIEALVKSAVGFSAERGDQVTVANIPFQE 416 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + I+ T+I L+ +G L + + L + I+ Sbjct: 417 TGDTGGEPPKWYDAPIVQ----TLIKNLLIGLGFLALIMFVIRPLLKTLKIERPAS---- 468 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + D ++ + + + L+ + Sbjct: 469 -----------------------SSFLPVQDDAEHAHMIEMQKLAQEKMRMTQIELVEKV 505 Query: 536 EINEERFAKILRKWARSEI 554 + + + A+IL+ W + Sbjct: 506 KQDPYQAAQILQNWLTRKE 524 >gi|90422618|ref|YP_530988.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18] gi|90104632|gb|ABD86669.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18] Length = 544 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 182/555 (32%), Positives = 305/555 (54%), Gaps = 14/555 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R+ +LA V L ++++ P ++ LY L D+ Sbjct: 1 MVNREYAQKLWSNLLELGPRRLTVLAMVGLAVFFGVGGGAYYLSRPEFNVLYSGLSREDI 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+S L +AN+ F ++ G +I V +AR LA +GLP SS++ GYELFDK+ S Sbjct: 61 TRVSAVLRDANVPFDVNATGDTILVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP GSFR+ A PTASV++R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQAPPTASVVLRTD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 P+ K+A ++RHLVAAAVP + VTVLDS G LL A++ +++ + + + Sbjct: 180 GPADAKTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGADDDGTGTTPTTMANLQRVVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ N++KAL +LG+DNF +V +L+ D +Q E VYDP+S+V+RS+R ++ + S++ Sbjct: 240 LIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETVYDPESRVQRSVRAVRERETSQS 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 ++ TV+QN+P S + ++E+ +NYE+++K+ T D Y + ++ + Sbjct: 300 LDRQTPTTVQQNLPDQQLNAGGGKNSNDEKQRREDVTNYEVSSKTTTTVSDGYVVNKMFL 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RL LG + +++ +AEI+++ + A G++ RGD I +++++F+E Sbjct: 360 AVLVNRPRLIASLGDKVSESAMEAKVAEISQLAATAAGLDRPRGDQIQVSAVEFIEGARD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++F ++L R ++A+ L ++ + GL + + Sbjct: 420 LAPVPGITFTEVLMRQSGNFVSAITILAVAGMLIWFGLRPAINVVLASSKSSEGAPLLAA 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + + NL ++ RL +++++E Sbjct: 480 EAAALLGADAAVAAQIARE------------AMPNLVQDVSRRAQHAPQKRLEQIVQLDE 527 Query: 540 ERFAKILRKWARSEI 554 ++ A IL++W R E Sbjct: 528 KQAAAILKQWIRQEE 542 >gi|120613031|ref|YP_972709.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1] gi|120591495|gb|ABM34935.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1] Length = 566 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 127/565 (22%), Positives = 227/565 (40%), Gaps = 42/565 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + ++L R++ L + I + + +AA P Y L+ L D I LS Sbjct: 21 LQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ ++ S+ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 81 NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERLN 138 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNI 245 I HLVA++VP + V+VLD TGKLL+ + I + LS VQ I+ + I Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAIDAQQLSYVQQIEQQYTRRI 258 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS----- 300 L +G +N ++ V AE++ + + P+ + S S+ S Sbjct: 259 LDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQGNQ 318 Query: 301 QPESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 P N P + + K+E +NYE++ T Sbjct: 319 PPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVTRA 378 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++R+S AVVVN + + G++ + ++ +V G + RGD++ I Sbjct: 379 GSGAIKRVSAAVVVNYQAIADAAGKAPQAKAFTPEQIEQMTALVRETIGYSKDRGDSVNI 438 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + FL + +++ + + L L++ L A++ ++ Sbjct: 439 MNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQPPA 498 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 G+ + + P L + + + Sbjct: 499 PAAAPASGRQVDAIEADEPERPALAAPAKPEDLIQTPEQM------------------RL 540 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 + + N A IL+ W E Sbjct: 541 EEARVLAKENPVAVANILKVWVNGE 565 >gi|170024616|ref|YP_001721121.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII] gi|169751150|gb|ACA68668.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII] Length = 570 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 127/584 (21%), Positives = 234/584 (40%), Gaps = 59/584 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L I + +A + SP Y LY L D I Sbjct: 10 NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F ++I RALEGE++RTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++V+++V L G+VTV+D TG+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I LA +G N + V A+++ +++ + Y P+ + S+ SE Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307 Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329 N P V+ ++ + Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANAAATANANTTATAAKASSSN 367 Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 + ++ +N+E++ T ++RLS+AVVVN LA++ Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 + A G ++ RGDT+ + + F + ++ F ++NA +L+ Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 L+ L LR + + + + A T + +AL NQ Sbjct: 481 LVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAETVKQSKEELALRKKNQQRV 538 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S + R+ + + + A ++R+W ++ Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569 >gi|238794015|ref|ZP_04637633.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909] gi|238726647|gb|EEQ18183.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909] Length = 572 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 126/581 (21%), Positives = 232/581 (39%), Gaps = 61/581 (10%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F + L + L + + +A + SP Y LY L D I L++ Sbjct: 15 FTTTLARLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLNDRDGGDIVTQLTQ 74 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 NI +R +DNG ++ +P+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 75 LNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQV 132 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187 RALEGE++RTI ++ ++ RVH+ MP F + PTASV ++ Sbjct: 133 NYQRALEGELSRTISTLGPVMNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRALDDGQ 192 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNIN 246 AI ++V+++V L G+VTV+D TG+LLT ++ + L +++ + I Sbjct: 193 INAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRFQRRIE 252 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP---E 303 LA +G N + V A+++ +++ + Y P+ ++ S+ SE Sbjct: 253 TILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAADKGAVRSQQVSTSEQLGGTNVG 312 Query: 304 SAVTVEQNMPHVSDRKVPLPRS-------------------------------LENTDKK 332 N P + + + Sbjct: 313 GVPGALSNQPSATPVAPIETPQATPAAGAAGATANNANAANRPATTTAAKSTATSSNSRH 372 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 ++ +N+E++ T ++RLS+AVVVN G LA++ + Sbjct: 373 DQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPVALTKDQLAQVESLT 428 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A G ++ RGDT+ + + F + T+ F ++NA +L+ L+ Sbjct: 429 REAMGFSTDRGDTLNVVNTPFSATDDASGNTLPFW---QQQSFFDQMLNAGRYLLILLVA 485 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 L +R + + SI + + A + +AL NQ S Sbjct: 486 WILWRKLVRPMMAKKQV--ADKAAASINNIVQTAVASENAKQSKEELALRKKNQQRVSA- 542 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R+ + + + A ++R+W ++ Sbjct: 543 ------------EVQAQRIRELADKDPRVVALVIRQWMSND 571 >gi|328545497|ref|YP_004305606.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1] gi|326415238|gb|ADZ72301.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1] Length = 546 Score = 349 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 193/553 (34%), Positives = 311/553 (56%), Gaps = 12/553 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + LG R++ LA + + I ++++ P LY L+ DV Sbjct: 1 MPGREHAEKLLANLLELGTRRLIALALIGVATIATVGLGAYYLSRPQQTTLYTGLQGEDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI AL +A I + +S +G+++ V +AR+ LA +GLP +++GYELFD + S Sbjct: 61 SRIGSALQDAGIPYDVSSDGTAVLVNHGAAARARMLLAERGLPR-GADAGYELFDDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIV+P+ GSFR+ P+ASV+IR+ Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMQGVRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 P ++A+AIRHLV+AAVP + VTVLD++G LL A + N ++ + A+ Sbjct: 180 VPDDLRTADAIRHLVSAAVPGMSADKVTVLDTSGGLLAAGKDPANASAGQIASLEAAVSG 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ NI K L +LG+DNF+ +V A+LN D ++I E +YDP+S+VERS+R + + S+ Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAADLNTDRRRIAETIYDPESRVERSVRTLRQNEMSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S E+ TV+QN+P + RS E ++EE NYEI++K+I T+ D Y +ERLSI Sbjct: 300 SSTETPTTVQQNLPDETVTAENGERSSEENQRREETVNYEISSKTIETSQDGYSVERLSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+V++ RL LG S D + + L EI ++V+++ G++SRRGD I ++ +DF+ Sbjct: 360 AVLVDRARLEASLGGSPDPDTVAAQLVEIEQLVASSAGVSSRRGDVIKVSVVDFVNGGRA 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 +S ++L R +INA L L+ + GL + + G+ Sbjct: 420 MEPVPPMSVSELLIRQSGNLINAFAILTVAGLLIWFGLRPALAVLVPQKSAAPAEIGELA 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + Q + + + +++ +L +++++E Sbjct: 480 MMT----------EGEGLAGEFSEARQLAGPDHSGMLQDLTNKLNQSPLKKLESLLDLDE 529 Query: 540 ERFAKILRKWARS 552 ++ A IL++W Sbjct: 530 QQSAAILKQWMYE 542 >gi|296107351|ref|YP_003619051.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99 Alcoy] gi|295649252|gb|ADG25099.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99 Alcoy] Length = 544 Score = 349 bits (894), Expect = 9e-94, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D SL R + + + I + +A + P Y LY +L D Sbjct: 1 MALADNASVAATKFASLSIPRQVGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119 + I L +IDF+I N + VP+ + AR+ LAAQGLP + G++L Sbjct: 61 SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 F + FM+ +ALE E+ARTI + I +ARVH+ +P +F + P+ASV I Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235 + K + AI +LVA+++PNL G VTV+D G+LL L Q Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++H+ I L LG R+ V A+++ + + + +++P+ RS + ++++ Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337 + + N P + +N + + N Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396 +E++ T + ++RLS+AV+V+ + + + + +I +VS A Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G+N +RGD++ + + F++ + + + F +VI + + L + F Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQIGGALFILAILFGV 475 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L + + + + T + I+ Sbjct: 476 LRPMLKTLASNK-----------DMDQATDNQDTGDFTLDGKISFR-------------- 510 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + + L +++ +R A++++ W Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541 >gi|284007155|emb|CBA72437.1| flagellar M-ring protein FliF [Arsenophonus nasoniae] Length = 554 Score = 349 bits (894), Expect = 9e-94, Method: Composition-based stats. Identities = 137/565 (24%), Positives = 236/565 (41%), Gaps = 35/565 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + + L + I F+AA F++ Y +Y L D I Sbjct: 10 NPLKGLSTIFDKIKSDPKVPLIVAGALAITFFIAAMFWLQGADYRPVYTNLSDKDGGEIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LS+ NI +++S +GS + VP+ V + R+ LA QGLP N+G+EL D+ FGL+ Sbjct: 70 TQLSQMNIPYQLSADGSMVKVPADQVHEVRLKLAQQGLPK-GGNAGFELLDQE-KFGLSQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F ++I RALEGE+A+TI+S+ + ARVH+ +P F + PTASV + Sbjct: 128 FSEQINYQRALEGELAKTIESLGVVQRARVHLAIPKPSLFVREQKNPTASVTLNLQNGRK 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241 AI H+++++V L +VT++D G LLT + R++ L+ VQ+I++ Sbjct: 188 LDEGQIAAIVHMISSSVSGLASSNVTIVDQLGNLLTQPDGISRDLNLTQLNYVQSIENRY 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + I + +G N + V A++N + Y P+ S SK RSE + Sbjct: 248 KQRIESIIMPLVGRGNVHAQVTAQINFARTEETAEEYKPNQPPNESAVRSKQTSRSEQNG 307 Query: 302 P---ESAVTVEQNMPH---------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 N P +D+ P P + + + +E +NYEI+ + T H Sbjct: 308 QLLVGGVPGALSNQPTPAPKAPIDKPNDKNAPQPINNNHNSRVDETTNYEIDRRIRHTQH 367 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 L+RLS+A++VN + + D L +I + A + +RGD++ + Sbjct: 368 QIGNLQRLSVAIIVNYADSDKKENDDSL-PLTDEKLTQIKTLAQEAMEFSEQRGDSLYVV 426 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F A V+ +L+ LL L ++ + Sbjct: 427 NAPFQAQDAELKPLE----FWQQPVFIANVLEIGRYLLLLLLAWLLWRLVVKPQLHKKRQ 482 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + L + + D A + R+N+ + Q Sbjct: 483 AEKAAKMAAELKVKKDAEQAARQKIEQDEAA----------RQEQTRQRVNAEMHTQ--- 529 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 RL M++ + A ++R W E+ Sbjct: 530 RLREMVQKDPRVVAMVVRDWMSKEL 554 >gi|213419965|ref|ZP_03353031.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 551 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 122/563 (21%), Positives = 220/563 (39%), Gaps = 52/563 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T + +ERLS+AVVVN L + + +I + A G + +RG Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT+ + + F ++ A +L+ ++ L A+ Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQ 483 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++D R R+ + V Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531 Query: 524 SKQSDLRLLHMIEINEERFAKIL 546 Q R+ M + + A ++ Sbjct: 532 MSQ---RIREMSDNDPRVVALVI 551 >gi|328542763|ref|YP_004302872.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1] gi|326412509|gb|ADZ69572.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1] Length = 538 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 134/549 (24%), Positives = 240/549 (43%), Gaps = 16/549 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + +LG TR+ + +V + I +F F V +P LY L + D + I Sbjct: 1 MNGLVEFIRTLGPTRVAAMGAVAAILIGVFAFIIFRVTAPQMTQLYSDLTLEDSSAIVNQ 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I F + +G++I +P V + R+ LA +GLP+ S GYE+FD+ ++ G TSF+ Sbjct: 61 LESLGIPFELKRDGATIMIPKEQVARVRMRLAEEGLPTGGS-IGYEIFDRSDTLGATSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RA+EGE+ARTI+S+ IV+ARVH+V+P+ F++ P+AS+ I+ Sbjct: 120 QNINHLRAMEGELARTIRSLDRIVSARVHLVIPERQLFQRDRRPPSASIAIKTRGSLGQN 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243 AI+HLVAAAV L V+++D TG+LL + E + I+ ++ Sbjct: 180 EIRAIQHLVAAAVDGLGPERVSIVDDTGRLLATGSDESAEGIVASSLQERTFEIEQRLKN 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L + +G R V AE++ + +DP+ +V RS + +++ S + Q Sbjct: 240 QIEEILNSVVGPGRARVRVAAEVDFNRITETSEKFDPEGQVVRSTQSKEESSTSISRQAG 299 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V N ++ E ++ EE N+EI+ + +++RLS+AV+V Sbjct: 300 VTVG---NQIPNAEADAGEGGDREGSNLAEEIVNFEISKSVRTEVVEAGRIKRLSVAVLV 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G + L I +V +A G ++ RGD + + ++ F + + + Sbjct: 357 DGVYSPNESGEVQYAPRTQEVLDRIAVLVRSAVGFDAARGDVVEVVNLRFAQAPEPDFDS 416 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + V L+ +LL+ + L R + K + + Sbjct: 417 ASAGLFEFTRDDVLRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEKAPQELVIAPDGTL 476 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 V D+ + +++ + S ++ MI+ Sbjct: 477 VAEVEVPAEAKEEDDEVV---------IEWLEEAKAQGALQASSIAKVGAMIDDYPTEAV 527 Query: 544 KILRKWARS 552 I+R W Sbjct: 528 TIVRGWLEE 536 >gi|167626144|ref|YP_001676438.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4] gi|167356166|gb|ABZ78779.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4] Length = 572 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 117/571 (20%), Positives = 210/571 (36%), Gaps = 33/571 (5%) Query: 5 DQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D+L + R R +++ + + + Y LY E + + I Sbjct: 20 DRLNSLKQKWHQFSRGDRHAATLAILAIVAACVIVLMLWSTGQGYSPLYGNQENVETSHI 79 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I +R+ I VP VG AR+ LAA+G+ + SG E D ++ G + Sbjct: 80 IEVLEAEGISYRLDPTSGLILVPEDRVGNARMVLAARGV-KAKVPSGMESLDS-SAIGTS 137 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA--I 180 FM++ +LEGE++RTI ++ + ARVH+ +P F + P+ASVM+ Sbjct: 138 QFMEQAKYRYSLEGELSRTIMALKSVKTARVHLAIPKKTLFIRQQPELPSASVMLDLYAG 197 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236 + +I +LVA +V + V ++D G L+ AN+ K L Q Sbjct: 198 QHLQPEQITSIANLVAGSVTGMTPERVQIVDQEGNHLSSEINANQDLTQARDKQLQYTQE 257 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + + L LG DNF+ V A +N + + DP + + + + Sbjct: 258 LEQSLINRASSMLQPILGQDNFQVQVAALVNFNQVEETRESLDPQT---VVSQEKQSTNQ 314 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + N P +D S N +E +E+ T + +LE Sbjct: 315 TSGDMALGIPGALSNQPPTADAATNNSTSNLNQ---QESRQFEVGRSVKHTRYQQMQLEN 371 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LSI+V++N E G L +++ +V A G ++ RGD +I+S +F Sbjct: 372 LSISVLLNNQAAGET-------GWTQPQLDQMSTMVQDAIGYSAARGDQFSISSFNFAPV 424 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 ++ + + + I + L + F L L + + Sbjct: 425 KIAEFEPLPWWQGESYQAYLRYFI----GAILGLGMIFFVLRPLVQHLTRTVEHNIKDTL 480 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS------RNLQSRINSYVSKQSDLR 530 S P + A T L + + + + + NL Sbjct: 481 PSTQPLMPPAEAATAHLSQDAAQEAADNLVALNNANINSNWTSNLNLPAPGSPLTVQMEH 540 Query: 531 LLHMIEINEERFAKILRKWARSEIEDRYTQH 561 L + R A+++ W ++ T Sbjct: 541 LSLLANQEPARVAEVISHWISDRDSEQNTHQ 571 >gi|254418232|ref|ZP_05031956.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3] gi|196184409|gb|EDX79385.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3] Length = 545 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 139/551 (25%), Positives = 238/551 (43%), Gaps = 12/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F + G R+ + V + +A + LY L++ + I+ A Sbjct: 1 MGGFTAALQKFGIGRLAAVLGVAAGVTAVLVAVMLRMGQAPDALLYSNLDLREAGEITTA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A I + +GS++ V VG AR+ +A +GL +S S GYE+FD + G T F Sbjct: 61 LQQAGIKYTSKGDGSTVMVNRDDVGTARMLIAGKGLVTSGS-VGYEIFDNQSVLGQTEFQ 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185 Q++ RAL+GE++RTI S+ GI AARVHI MP F PTA+V++ Sbjct: 120 QQLNEQRALQGELSRTIMSMRGITAARVHITMPRREMFTAAAGDPTAAVLVGLGGRDLTP 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMN 244 AIR+LVA++VPNL VTV D + L A ++ + + +++ Sbjct: 180 DQVRAIRNLVASSVPNLKPDRVTVADQNNRTLAAGSDDGTFSSASAAETKGNTEAQLQSR 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + +G+ R V A+++ +E +DPD +V RS + T Q + Sbjct: 240 IKDIVEGVVGIGAARVQVTADIDQSRSTTQEQKFDPDGQVVRSTTANGSQSSDTTGQNDG 299 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VT N+P + + + + E +NYEI+ + TT + ++++L++AV V+ Sbjct: 300 GVTAANNIPGGAP--PATTPAGATSAENAETTNYEISNTTTTTTKEPGEVKKLAVAVAVD 357 Query: 365 KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 G + +A+I +V+AA GI+ RGD I + ++ F + G Sbjct: 358 GKWTPAADGKGEPTYAPRTAEEIAQIKSLVAAAAGIDEARGDKIEVINVRFNHDTGIAGG 417 Query: 423 TV-QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + S +D +I + V LL+ F L L + + Sbjct: 418 LEGKSSLLDFSRTDVMRLIELGILAVVALLLIFFVLRPLLKTAGGAAPGAVAAAPAGL-- 475 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P+++ TT + + L + +RI V S ++ ++ + + Sbjct: 476 --PVATVTTTVIGADGQPQLVQLPAPNEMDQKIDIARIEGQVKASSVKKVADFVQAHPDE 533 Query: 542 FAKILRKWARS 552 A ILR W Sbjct: 534 AAGILRNWVAE 544 >gi|326319071|ref|YP_004236743.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375907|gb|ADX48176.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC 19860] Length = 568 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 129/569 (22%), Positives = 227/569 (39%), Gaps = 44/569 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + ++L R++ L + I + + +AA P Y L+ L D I LS Sbjct: 19 SVLQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLS 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 N+ ++ S+ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + Sbjct: 79 TMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQER 136 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186 + R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 137 LNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRT 196 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKSLSIVQAIQHEI 241 I HLVA++VP + V+VLD TGKLL+ + I + LS VQ I+ + Sbjct: 197 QLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSGSAIDAQQLSYVQQIEQQY 256 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS- 300 I L +G +N ++ V AE++ + + P+ + S S+ S Sbjct: 257 TRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGT 316 Query: 301 ----QPESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 P N P + + K+E +NYE++ Sbjct: 317 QGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVR 376 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGD 404 T + ++R+S AVVVN + E G++ + ++ +V G N RGD Sbjct: 377 VTRAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGD 436 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 ++ I + FL + +++ + + L L++ L A++ ++ Sbjct: 437 SVNIMNTQFLVDNTPAVELPLWKQPEMIELVRSLGWPVGMSLFAALILLGLVRPAIKGMN 496 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 G+ + + P L + + + Sbjct: 497 QPPAPAAAVASGRQVDAIEADEPERPALAAPTKPEDLIQTPEQM---------------- 540 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 + + N A IL+ W E Sbjct: 541 --RLEEARVLAKENPMAVANILKVWVNGE 567 >gi|319403971|emb|CBI77559.1| Flagellar M-ring protein [Bartonella rochalimae ATCC BAA-1498] Length = 554 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 202/552 (36%), Positives = 312/552 (56%), Gaps = 11/552 (1%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 L L + LG R++ L V L + + F++ P Y+ LYV L DVNR Sbjct: 5 FLAFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYEILYVGLSRDDVNR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + +AL EA I F +S +GS++ VP +AR+ LA +GLP+S+ N+GYELFD + S GL Sbjct: 65 MGMALGEAGIAFDVSSDGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMGSLGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 TSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFRK +PTASV+IR + Sbjct: 124 TSFMQEITRQRALEGEIARTIQAVQGLKAARVHIVLPDKGSFRKANQKPTASVVIRTNSG 183 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEI 241 + A++IR LVAAAVP+L+ VTV+D+ G+LL + N ++ + Q + +I Sbjct: 184 FAVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQVASQI 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 + NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S+ ++ Sbjct: 244 DANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADSQNNR 303 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 AV VEQN+P RS + D++EE +NYEIN+K+I+T D Y +++L++A+ Sbjct: 304 NSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKLAVAI 363 Query: 362 VVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VV++ RL G + + ++ + I ++V+ A G++ +RGD I +T++DF+ N + Sbjct: 364 VVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGNSEAD 423 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 VQ LSR+ + +IN + ++ L+ FLG+ L R Sbjct: 424 MAPVQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENSENAVAG 483 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + ++N + + + + RL MI ++EE Sbjct: 484 LGNIPALEHQYQDNAEFGGVTGTNN--------DTLHNLRNRMRVPPQNRLEQMIAMDEE 535 Query: 541 RFAKILRKWARS 552 RFA +LR+W Sbjct: 536 RFAGVLREWVHD 547 >gi|311695217|gb|ADP98090.1| flagellar MS-ring protein [marine bacterium HP15] Length = 569 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 112/560 (20%), Positives = 224/560 (40%), Gaps = 29/560 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F L R + L + + L +A + P+Y + L + ++ Sbjct: 23 ESRSDLFMGFNRLNLLRQIGLMVGLAASVALGLAVVLWAQEPNYQPVVGDLSSYNPQDVT 82 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L ID+++ ++ VPS V AR+ LAA+G+ + GYEL D+ G + Sbjct: 83 TILESNGIDYKMDPRTGALLVPSDQVYNARLKLAAEGV-TDRQTMGYELLDQERGLGTSQ 141 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FM+ I+ R LEGE+ART+ S+ G+ ARVH+ +P+ F + P+ASV + Sbjct: 142 FMETISYRRGLEGELARTVASMRGVRNARVHLAIPERSVFVRDARDPSASVFLEVFAGRR 201 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 + AI +LVA +VP + VTV+D G LLT + + ++ Sbjct: 202 PEQEQINAIVNLVAGSVPMMSKEHVTVVDQNGNLLTGKQSQSGADQMADQYEYTAKVEER 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + + +G +R+ V A+L+ + + E +++P+ + RS R + + + Sbjct: 262 LTRRVASLIGPIVGDGRYRAEVSADLDFSSVEQAEELFNPEQQAVRSERELTERRTAGAQ 321 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN--------TDKKEEQSNYEINTKSIATTHDNY 352 N P + + + E NYE++ + Sbjct: 322 --GGIPGALANQPPANATVPEQAAGGDGEQAAPAPVNVRSESTRNYEMDRTVSYRRQELG 379 Query: 353 KLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++R+++A+ V+ ++ + G + + + L ++ +V A G ++ RGD++T+ + Sbjct: 380 RVKRVTVALAVDDMKVVDPQTGEVSYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNT 439 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + F ++ ++ + L++ L + + Sbjct: 440 AFAQEESVEFEAPAFWEQP----WFWDLMKQVLAGLVILVLVLGLLRPTLKSLS------ 489 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 GG S G D+I + S +L + + L Sbjct: 490 ---GGGQRERGLDSGSGSGGGYGGLDDIEGGDELRKAMSAQDDLLLPGATDGYDRQLNAL 546 Query: 532 LHMIEINEERFAKILRKWAR 551 +I + R A+++R+W Sbjct: 547 KGLIAEDPARVAQVMRQWVN 566 >gi|120554914|ref|YP_959265.1| flagellar MS-ring protein [Marinobacter aquaeolei VT8] gi|120324763|gb|ABM19078.1| flagellar M-ring protein FliF [Marinobacter aquaeolei VT8] Length = 568 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 119/562 (21%), Positives = 229/562 (40%), Gaps = 34/562 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L R + L + + L +A + P+Y + L + ++ Sbjct: 23 ESRSNLLLGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDLSAYNPQDVT 82 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L ID+++ ++ VPS V AR+ LAA+G+ + GYEL D+ G + Sbjct: 83 TILDSNGIDYKMDPRTGALLVPSEQVYSARLKLAAEGV-TDQKTMGYELLDQERGLGTSQ 141 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS- 183 FM+ I+ R LEGE+ARTI ++ G+ ARVH+ +P+ F + PTASV + Sbjct: 142 FMETISYRRGLEGELARTIAAMRGVRNARVHLAIPERSVFIRDAREPTASVFLEVFAGRR 201 Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240 + AI +LVA ++P ++ VTV+D G LLT +E E + + ++ Sbjct: 202 PEPEQIRAIVNLVAGSIPMMNRDQVTVVDQNGNLLTGDEVQAETDRMKDQYEYTSRVEER 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + + +G +R+ V A+L+ + E +Y+P+ + RS R + +++ Sbjct: 262 LTRRVASLIGPIVGEGRYRAEVTADLDFSAVERAEELYNPEQQAVRSER--ELSEQRVAG 319 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN----------TDKKEEQSNYEINTKSIATTHD 350 N P + + + E NYE++ T + Sbjct: 320 AQGGIPGALANQPPGAATVPEQATAAPGEDGAPAAPPVNVRSESTRNYELDRTVSYTRQE 379 Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R+++A+ V+ ++ + G + Q ++ L ++ +V A G ++ RGD++T+ Sbjct: 380 LGAVKRVTVALAVDDMKVVDPETGEVSYQPWPEAELQRLSMLVRDAVGYSASRGDSVTVM 439 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + V+ LV L+ L + L L + Sbjct: 440 NTAFAPEEAVEFEAPGFWEQPWFWDLMKQVLAGLVILILVLGLLRPTLKTLSGGGRRERG 499 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + GE G L+ A+ + D++ L + + + Sbjct: 500 EGGEEGEYGGLADIEGGQALRDAMSSQDDLLLPGA----------------TDSYDRQLN 543 Query: 530 RLLHMIEINEERFAKILRKWAR 551 L +I + R A+++R+W Sbjct: 544 ALKGLIAEDPARVAQVMRQWVN 565 >gi|78355400|ref|YP_386849.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217805|gb|ABB37154.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 539 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 127/562 (22%), Positives = 246/562 (43%), Gaps = 36/562 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + + T + ++ + + + +V + +F F++N P Y LY KL D N Sbjct: 3 ALNSAVDKAKTFWTRISMSQRVFIVGLTVVVVGIFFGLIFWINQPDYRVLYSKLTPEDAN 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ L + +R+ + GS+I VP+ V R+ +A +G G+E+FD++ G Sbjct: 63 RVVTVLQAQKVRYRLDNGGSTIMVPADRVYDMRLMVAGEGSV-VGQGVGFEIFDQI-KVG 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 T F+Q+I RAL+GE++RTI + +ARVH+V+P F + +P+ASV+++ Sbjct: 121 QTDFVQKINYQRALQGELSRTIAEFPAVESARVHLVIPHRSLFIEEQMQPSASVVLKLQD 180 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQA 236 K +A+ +LV +V LD G ++V D++GK+L + E + L Sbjct: 181 GKKMDEKDVQAVVNLVTMSVEGLDQGKISVADTSGKILYYPKDEQSLDGMTSTQLEHKLT 240 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 +Q E I + L +G + V A+L+ + IR+ ++DP+S V RS +++A++ Sbjct: 241 MQQNFERRIEELLYPVIGPGKVIAKVNADLDFSQKTIRKKLFDPESSVVRSEIRTEEARK 300 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 ++ + + S E+++++ +NYEIN + +L+R Sbjct: 301 GTSNVNAGVP-----EANFRGDGMSGGTSTEDSNRETRNTNYEINEEEQNIIAPVGQLDR 355 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 LS+AV+V+ G + D +A I ++V++A G + RGD + ++S+ F Sbjct: 356 LSVAVIVDGTYEKNEETGEWTYVPRSDEEVARIRQLVASAVGFDRARGDVLEVSSISFGG 415 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + +S +++ + + L+ + L + + + + V Sbjct: 416 PEADTY----MSLAEVIMDYALRLGKPLLNALLVFLFLVMVVRPVVLALIRPKVEGEVVE 471 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L A+ G ++ + L + Sbjct: 472 GLEGLPTGEERLALIEGE-------------------EDMDAMDALKKIDDIKAHALQLS 512 Query: 536 EINEERFAKILRKWARSEIEDR 557 E N E+ IL+ W + + Sbjct: 513 EQNMEQAVGILKSWLKDSEGAK 534 >gi|268316357|ref|YP_003290076.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252] gi|262333891|gb|ACY47688.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252] Length = 533 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 126/564 (22%), Positives = 220/564 (39%), Gaps = 46/564 (8%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 Q + + L + L L +V + I+L + ++ P Y L+ L SD +RI Sbjct: 2 FEQLKQFLSRLSPGQRLALGAVTIGSILLLLGIAYWAGRPEYALLFGGLSPSDASRIVET 61 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E N+ +++ + G++I VP V + R+ A +GL S GYELFD+ G+T FM Sbjct: 62 LQEENVPYQLKEGGTAIWVPRDRVYELRLRFAGEGLVSDG-PVGYELFDQNT-LGMTDFM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSV 184 Q + RALEGE+ARTI S+ + A+VH+V+P+ FR+ P+ASV+ +++ Sbjct: 120 QRLNYKRALEGELARTIMSLQQVELAKVHLVLPERSPFRETQVAPSASVLLSLKSGARLT 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEI 241 + + I LVA AV LD +VTVLD+ G LL+ + + L + QA++ + Sbjct: 180 EEQIDGITALVAGAVEGLDPANVTVLDARGNLLSNPDAGNAELALSSTQLKLRQALEAHL 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 L LG N V A LN D + DP+S S ++ Sbjct: 240 TEKGQSMLDRVLGPGNAIVRVSATLNFDQAVTERQLIDPESATVISEERLEE-------- 291 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 E + NYE++ + +E L+++V Sbjct: 292 --------------------AGTGGEGSSASSMVRNYELSRTVERIQQNGGDVEYLTVSV 331 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 ++N+ G + + L EI ++V A G RGD I F Sbjct: 332 ILNQRFEEGPDGTPQPRPYTEDELREIEELVKNAVGFRPERGDRFAIHQTRFDTQIDDQI 391 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + ++ L +L +RR+ + + +G Sbjct: 392 AQELRE--QRRQEQLNLYLRYGLMVLALGLAVWLLRALVRRMGELAGETQVLIGRVDQEH 449 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFS---------HSRNLQSRINSYVSKQSDLRLL 532 + +G + + S + + +++ + Sbjct: 450 GALGAPEGASGALQGKAVPGLESGESDEELVLIDDIYTSRLSAEAKARLKAKHILFEEVQ 509 Query: 533 HMIEINEERFAKILRKWARSEIED 556 + E A+I+R W ++++D Sbjct: 510 KQVNEKPEEAAEIIRSWLVADMQD 533 >gi|261821173|ref|YP_003259279.1| flagellar MS-ring protein [Pectobacterium wasabiae WPP163] gi|261605186|gb|ACX87672.1| flagellar M-ring protein FliF [Pectobacterium wasabiae WPP163] Length = 569 Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 119/581 (20%), Positives = 238/581 (40%), Gaps = 58/581 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY + D I L Sbjct: 13 NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++NG +I +P++ V + R+ LA GLP + G+EL DK FG++ F + Sbjct: 73 TKLNIPYRFAENGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDKE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 +I RALEGE++RTI+++ + ARVH+ +P F + P++SV + Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKSPSSSVTLTLQPGRALDE 190 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 +I ++V+++V L +VTV+D TG+LLT + L ++ + Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDMNAAQLKYSNEVEAMYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----- 299 I +A +G+ N + V A+++ ++ + Y P+ +++ S+ +SE Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQKGGPN 310 Query: 300 ------------------------SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--KKE 333 + + Q + + ++ T + + Sbjct: 311 VGGVPGALTNQPAPAPTAPIATPPNNANNQAGAGQQNQNNAGGTQANANAVIQTSNVRND 370 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 +NYE++ + T H ++RLS AV+VN + + +I + Sbjct: 371 ATTNYEVDKTILHTKHSTGGVKRLSAAVIVNYQ---PPGEDGKPVALTEDQIKQIETVAR 427 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A G ++ RGDT+ + + F++N +S F ++ A +L+ ++ Sbjct: 428 EAMGFSTERGDTLNVVNTPFMDNTEGSSELP----FWQKQAFFDLLMEAGRWLLVLIVAW 483 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 L +R + ++ + L+ ND+ + + + R Sbjct: 484 ILWRKLVRPQLRKKELQQEAALAAASLNKG------------NDDDVVVNLSTSEIEQQR 531 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 Q R+++ + R+ + E + A ++R+W +E+ Sbjct: 532 KSQQRVSAEMQS---NRIRELAENDPRVVALVIRQWMSTEL 569 >gi|217976233|ref|YP_002360380.1| flagellar MS-ring protein [Methylocella silvestris BL2] gi|217501609|gb|ACK49018.1| flagellar M-ring protein FliF [Methylocella silvestris BL2] Length = 546 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 196/553 (35%), Positives = 309/553 (55%), Gaps = 12/553 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M QL Q + + LG R++ LA + + + A +F++ P + LY L+ DV Sbjct: 1 MIGQKQLEQIWANLLKLGSRRLIALAMIGVSIFAMTGLAGYFLSRPALETLYAGLDRQDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI AL EA+I F ++ G++I V +AR+ LA +GLP +S N+G ELFDK+ S Sbjct: 61 SRIGAALKEADIAFDVNAEGNTILVRYGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT+FMQE+TRVRALEGE+ARTIQ + G+ AARVH+VMPD GSFR+ P+ASV+IR Sbjct: 120 GLTTFMQEVTRVRALEGELARTIQLMRGVKAARVHVVMPDEGSFRRTREPPSASVVIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 +A++IRHLVA+AVP + M +VTVL++ G LL + N++ + G L++ + + Sbjct: 180 MADDVGAAKSIRHLVASAVPGMTMEEVTVLNTEGVLLASGNDLADSAPGGMLTLERTVSQ 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI K L +LG+ NF+ +V LN D +Q E +Y+PDS+VERS+++++ Q S+ Sbjct: 240 EILDNIRKTLTPYLGLRNFQVSVATRLNTDKKQTNETIYNPDSRVERSVKVTRQNQLSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S +S TVE+N+P + + +S E + K EE +NYE+++K+IATT + ++ +S+ Sbjct: 300 STAQSPTTVERNLPQENVKADDGKQSNEESKKSEELTNYEVSSKTIATTSGGFAIDNISV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV++N+ L LG + L E+ +++++A G RGD I I+++DF++ Sbjct: 360 AVLINRASLMASLGDRPAPEALGKQLGELEQLIASAAGARKERGDAIKISAVDFIDAGRD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++L R V+NA+ LV TLL+ + GL R A + Sbjct: 420 LEPQPPPPVSELLMRQSGNVLNAVTILVVTLLLIWFGLRPAARAILAAPAPAAVEVAELE 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 ++ + NL + S + RL ++E +E Sbjct: 480 TLSGEGAAGDANMEIGG----------WGPQGEVNLIEDLTSAPRRSPQKRLEQIVEFDE 529 Query: 540 ERFAKILRKWARS 552 E+ A IL++W Sbjct: 530 EQAAAILKQWMSQ 542 >gi|319405414|emb|CBI79033.1| Flagellar M-ring protein FliF [Bartonella sp. AR 15-3] Length = 554 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 203/556 (36%), Positives = 315/556 (56%), Gaps = 15/556 (2%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+ L F + LG R++ L V L + + F++ P Y+ LYV L Sbjct: 1 MFDKFLAFLSSSGNALYKLGVKRLIALGMVGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DVNR+ +AL EA I F +S +GS + VP +AR+ LA +GLP+S+ N+GYELFD + Sbjct: 61 DVNRMGMALGEAGIAFDVSSDGSVVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK +PTASV+IR Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAI 237 + +SA++IR LVAAAVP+L+ VTV+D+ G+LL + N ++ + Q + Sbjct: 180 TNSGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASIMMASLEQQV 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 +I+ NI K L +LG+D+F+++V L+ D +Q E V+DP+S+V RS+R +D S Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + ++ AV VEQN+P S + D++EE +NYEIN+K+I+T D Y +++L Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGETSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359 Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 ++A+VV++ RL G + + ++ + I ++V+AA G++ +RGD I +T++DF+ + Sbjct: 360 AVAIVVDRARLILPDGTKPTSENALNDEVNRIQQMVAAAAGLDPKRGDIINVTAVDFVGH 419 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + VQ LSR+ + +IN + ++ L+ FLG+ L R Sbjct: 420 SEADMAPVQTPIWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENNEN 479 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + ++N + + + + + RL MI Sbjct: 480 TVAGLGNIPALEHQYQANAEFGSVRGTNN--------DTLNNLRNRMRVPPQNRLEQMIA 531 Query: 537 INEERFAKILRKWARS 552 ++EERFA +LR+W Sbjct: 532 MDEERFAGVLREWVND 547 >gi|307546949|ref|YP_003899428.1| flagellar MS-ring protein [Halomonas elongata DSM 2581] gi|307218973|emb|CBV44243.1| flagellar MS-ring protein [Halomonas elongata DSM 2581] Length = 581 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 125/577 (21%), Positives = 214/577 (37%), Gaps = 43/577 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F + L + ++ L I + A + ++P Y LY L +D I L Sbjct: 18 SFAQLKRQLRGSPLVALLIAGAASIAVVAALMLWASAPQYRVLYSNLSEADGGSIIAELD 77 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +I +R S G ++ VP V K R+ LA QGLP N G EL + +FG++ F ++ Sbjct: 78 SRSIPYRFSQGGQALMVPGDQVHKLRLQLAEQGLPK-GGNVGLELM-EDQAFGISQFAEQ 135 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186 I R LEGE+AR+++S+ + ARVH+ + F + ASV++ V Sbjct: 136 INYQRGLEGELARSMESLGPVAEARVHLALAKDSVFVRRREPAKASVVLTLEPGRVLGKG 195 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMNI 245 A+ H+V+++VP+L VTVLD G+LL+ + + G L V ++ I Sbjct: 196 QVNAVAHMVSSSVPDLAAEAVTVLDQNGRLLSRPDGGSLGLDGTQLDYVAEVERAYRQRI 255 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--PE 303 L LG R+ V A+L+ ++ Y P+ + S+ Sbjct: 256 EAILTPILGRGKVRAQVTAQLDFSRREETAERYTPNQPPNEAAVRSRQTSLDLNGDDLAN 315 Query: 304 SAVTVEQNMPH-----------------------VSDRKVPLPRSLENTDKKEEQSNYEI 340 N P ++ + +++ NYE+ Sbjct: 316 GVPGALSNTPPGFAESPIATAPEDGEDAAADADQETNDTASQASQAQRRLSRDDVINYEV 375 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 + + H ++ERLS AVVV+ + G D LA++ ++V A G Sbjct: 376 DRQVSHVEHQRGRIERLSAAVVVDYRQTPAEQPDGEPTAAPLDDDELAQVKRLVQQALGF 435 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + RGD +T+ + F + + ++ F LV L LL L Sbjct: 436 SEARGDQVTVVNRPFADESSSQAELAWWQRPELQRLAFGLGRYLLVGLALLLLYLLLLRP 495 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +RR S ++ + + + R Sbjct: 496 LIRRYTERPLPAAVSPTPSIDTRIGDEPSDEDATSGEDEPASHATP-----------RRR 544 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +Q+ L M + + A I+R W + Sbjct: 545 RKASAYEQNLNDLREMAQEDPRMVAMIVRGWMNKHEQ 581 >gi|292489162|ref|YP_003532049.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|292900280|ref|YP_003539649.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291200128|emb|CBJ47254.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946] gi|291554596|emb|CBA22238.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430] gi|312173321|emb|CBX81576.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158] Length = 561 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 124/579 (21%), Positives = 225/579 (38%), Gaps = 55/579 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + SL + L+L I + +A F+ P Y L+ + D I Sbjct: 11 NPADSVKAAMNSLRNSPKLLLPIAAAAAISVMIALMFWAKEPGYRVLFNNISDEDGGAIV 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LS+ N+ +RI G +I VP + V + R+ +A QGLP S G+EL D+ FG++ Sbjct: 71 SQLSQMNVPYRIDTAGGAIMVPEAQVHEVRMKMAQQGLPKGGS-VGFELLDQE-KFGISQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F +++ RALEGE+ARTI+++ I ARVH+ +P F + +PTASV + Sbjct: 129 FSEQVNFQRALEGELARTIENLGPIQHARVHLAVPKPSMFVRDQKQPTASVNVTLAQGRA 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 AI HL+++AV L +VT++D G LLT + + I+ + + Sbjct: 189 LDDGQVTAITHLISSAVSGLPAANVTLVDQRGNLLTQSGTGALQTS-QVKYTNEIEADYQ 247 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSET 299 I + LA +G N R+ V A+L+ Q+ + Y P+++ E+ S+ + + Sbjct: 248 QRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQYQPNAEREKMAIRSRQSSQAAQGNG 307 Query: 300 SQPESAVTVEQNMPHVSD----------------------RKVPLPRSLENTDKKEEQSN 337 N P + ++ +E +N Sbjct: 308 RGSGGVPGALSNQPPTPATAPLTKPLNAPAANGKNANNEKTPPAGEVAQPYNNRNDETTN 367 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 YE++ I T ++RLS+AVV+N + LA IN +V A G Sbjct: 368 YELDRTLIHTKTSVGHIQRLSVAVVINHMAQGAE---GKTGPLPAAELARINTLVKEAIG 424 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + +RGD++ I + F + + T+ LV + + Sbjct: 425 YSEQRGDSVNIVNSPFNG--VVEEVMPPLWQQQSFQTLIMTLARYLVIAIIG---WVMWR 479 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 ++ + + + + + L+ ++ + Sbjct: 480 RLVQPVWIRH-----------------QDTTIKRLELEKEARKLELEEKNKAAQMSAHAK 522 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 ++ + +L + E A ++R+W E + Sbjct: 523 EKRRTDTEINGQQLRELAEQEPRVIALVMRQWLNKEHKS 561 >gi|170769442|ref|ZP_02903895.1| flagellar M-ring protein FliF [Escherichia albertii TW07627] gi|170121766|gb|EDS90697.1| flagellar M-ring protein FliF [Escherichia albertii TW07627] Length = 552 Score = 346 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 128/577 (22%), Positives = 239/577 (41%), Gaps = 47/577 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALVLWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R+S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRVSETSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ +P F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G++T++D G LLT + ER++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPTGNITLVDQGGHLLTQSNSSERDLNDIQLKYANDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L +G N + V A+L+ +++ E Y P+ ++ S+ ++ Sbjct: 239 ESRIQQRIEAILTPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGNESQTALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338 ++S + P N P ++ S + ++ E SNY Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTTQNNRQQQTSTTSNSGPRSTQRNETSNY 358 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T + ++RLS+AVVVN L + + +I + A G Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNDKTLPDGK----PLPLSTEQMKQIEDLTREAMGF 414 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +RGD++ + + F + + +++A +L+ L+ L Sbjct: 415 SEKRGDSLNVVNSPFNSSNESSGELP----FWQQQAFIDQLLSAGRWLLVLLVAWLLWRK 470 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A+R V ++ ++ ++D R R Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQAR------------QEVEDAVEVRLSKDEQLQQRRANQR 518 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +++ V Q R+ M + + A ++R+W ++ E Sbjct: 519 MSAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552 >gi|332526951|ref|ZP_08403040.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2] gi|332111390|gb|EGJ11373.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2] Length = 554 Score = 346 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 114/562 (20%), Positives = 208/562 (37%), Gaps = 42/562 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F T+L ++ + + + + + + Y L+ + D I L++ Sbjct: 19 FVARLTALPMKTKVMAGAGLAALLAIVVVLALSLKQDDYRVLFANVGEKDGGAIVEKLAQ 78 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ +R S+ G +I VP+S V R+ L+A GLP S +GYEL DK +FG T + I Sbjct: 79 MNVPYRFSEGGGTIMVPASQVYDLRLKLSAAGLPK-GSITGYELLDKT-AFGQTQGQERI 136 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187 RALEGE+ RTIQ++S + ARVH+ +P+ F + +P+ASV++ Sbjct: 137 NLQRALEGELTRTIQTLSSVETARVHLALPNQNGFFREQQKPSASVVLTLRPGHTLDRAQ 196 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNIN 246 I HLV+++VP L V+VLD G LL++ + + + L V+ ++ +N Sbjct: 197 LAGIVHLVSSSVPELSAKAVSVLDGDGSLLSSQDNASQGLDTQQLQYVREVEATYLRRVN 256 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PE 303 L LG DN R+ V AE++ + + P+ + + S P Sbjct: 257 DLLEPVLGRDNLRATVTAEVDFSQTEQTSEEFKPNQGDNPAAVRASRVSESTRPGANVPS 316 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------ENTDKKEEQSNYEINTKSIATTHDNYK 353 N P V + +++ ++ YE++ Sbjct: 317 GVPGAVSNQPPVPASAPINGPAQALQAANGGAAGGNAQRDAETRYEVDKTVRVIRGATGT 376 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + R++ AVVVN + G+ L ++ +V G + RGD++ + + F Sbjct: 377 VRRINAAVVVNHRNGVDAKGKPTSTPLSQEELDKLTALVEQGIGFSKERGDSVRVVNAPF 436 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + V + + + ++ L+V F + + Sbjct: 437 RVEKAPEAEEVPIWQQPWVLDLLRSGATPAALVLVALIVVFTLIRPAIKAAAAKPEPIKG 496 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ + + + S Sbjct: 497 ETVDELVDGGAALPG------------------------PDQLPALEAPRSNDKLEAARK 532 Query: 534 MIEINEERFAKILRKWARSEIE 555 + N A I+R W E Sbjct: 533 LARENPAAVANIVRGWVSGEAA 554 >gi|170751440|ref|YP_001757700.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831] gi|170657962|gb|ACB27017.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM 2831] Length = 525 Score = 346 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 132/532 (24%), Positives = 243/532 (45%), Gaps = 10/532 (1%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI 83 +A+V L I F V+ P L+ L + D + L I + + G +I Sbjct: 1 MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI 60 Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 P + K R+ LA +GLP+ GYE+FDK ++F T+F+Q + +RALEGE+AR+I Sbjct: 61 LAPRPDLAKLRMDLAGKGLPTQGG-VGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSI 119 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLD 203 ++I + AARVH+V+P+ F + P+A+++++ + AIRHLVA+AV L Sbjct: 120 RAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLK 179 Query: 204 MGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 ++++D G+LL + ++ A++ + I +A +G R Sbjct: 180 PERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQ 239 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321 V AEL+++ + R +DP+S+V RS + ++ + ++ + +V N ++ Sbjct: 240 VNAELDLNRVESRSETFDPESRVVRSAQTRTESAVTGNAEGQVSVG---NELPGANGGDK 296 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 P + T+K EE +NYEI+ + + +++RLS+AVV++ G+ + Sbjct: 297 APTPKDATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRT 356 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + + I +V A G + RGD I + ++ F E T +L+ V+ Sbjct: 357 PAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVLR 416 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 V LL + L +R L A E + A ++ + Sbjct: 417 MAELAVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDA---AVVAGPGGTV 473 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++D + ++IN V ++ R++ M+ + ++LR W + E Sbjct: 474 TVIDRDSPTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE 525 >gi|109947514|ref|YP_664742.1| flagellar MS-ring protein [Helicobacter acinonychis str. Sheeba] gi|109714735|emb|CAJ99743.1| flagellar basal-body M-ring protein [Helicobacter acinonychis str. Sheeba] Length = 567 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 118/572 (20%), Positives = 231/572 (40%), Gaps = 26/572 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L ++ ++ L + + Y L+ Sbjct: 1 MDLKILLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDPSDNALILQYLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q + +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DSKD-FGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ L + + + + Sbjct: 178 VMLKLKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKDQ--EKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F ++ T M + + + +L+ +++ + Sbjct: 416 VAVSNFEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + ++ ++ + A + + + EI Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISS 562 >gi|294664059|ref|ZP_06729461.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606162|gb|EFF49411.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 572 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 108/530 (20%), Positives = 208/530 (39%), Gaps = 24/530 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312 Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 P+ N P + + K NYE++ Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 T +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+ Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 ++ + F+ + + + + LV V L + F + R Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 A K + G P + + L+ I + Sbjct: 489 VTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKTPD 538 >gi|254517007|ref|ZP_05129065.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3] gi|219674512|gb|EED30880.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3] Length = 566 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 127/563 (22%), Positives = 218/563 (38%), Gaps = 30/563 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F + TR L L + I + M +V P+Y LY + D N + +L Sbjct: 13 FNGFSRQPATRQLALLIGLAASIAMAMGMVQWVVEPNYKPLYGTMAPEDTNDVIASLEAN 72 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 +D+R+ ++VP+ V +AR+ LA G P G+E + GL+SFM++ Sbjct: 73 GVDYRMDRRSGMVAVPAGDVHRARLLLAGDGYPR-GEGVGFESLYREQEIGLSSFMEQAR 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALE E+ARTI ++ + ARVH+ M +F + +P ASVM+ Sbjct: 132 FHRALESELARTIGALESVRGARVHLAMAKQSAFLRQREQPAASVMLNLYAGRTLNERQL 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNIN 246 I HLVA++VPNLD V+V+D GKLL+ + E + ++ E+ I Sbjct: 192 SGIVHLVASSVPNLDSEQVSVVDQQGKLLSGQGTDEEFGFTQDQFRYSRQLESELSGRIV 251 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L LG + R+ V A+L+ + Y P++ R + S Sbjct: 252 DILEPILGANAVRAQVAADLDFTRVERTLETYAPET---RVRSEQTSEETSNRLYAGGVP 308 Query: 307 TVEQNMPHVS----------------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 N P + D + NYE++ Sbjct: 309 GTLSNEPPIDTTVATVQAAPNVDANIDANAQAGAIPPARTSRRSTINYEMDKTISHVRET 368 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 L++LSIAVV++ T G ++ + E+ +V A G ++ RGDT+++ S Sbjct: 369 PGALQKLSIAVVLDYIETTADDGTTSRVPMPQERIDEVTSLVREAVGFDADRGDTVSVIS 428 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F+E ++ S ++ + L+ L L + F+ + L + + Sbjct: 429 ASFVEVPAIEDSVIESSLLE--QDWIWQLAKGLLVLTVLLALVFVVVRPLVKFAAVPVPM 486 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G + +A+ G M +D + L Q + + Sbjct: 487 MQSPQGLAGPGQQQPVAALGGGGMADDQVTLGGQGQMGLPGTAGAGGGGYQQQLQ----M 542 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + +R A+++R W + Sbjct: 543 ARSVAAGEPDRAAQVVRGWVSDD 565 >gi|300899195|ref|ZP_07117471.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] gi|300357176|gb|EFJ73046.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] Length = 511 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 126/535 (23%), Positives = 224/535 (41%), Gaps = 47/535 (8%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 2 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 61 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP Sbjct: 62 PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 119 Query: 163 SFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F + P+ASV + AI HLV++AV L G+VT++D G LLT + Sbjct: 120 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 179 Query: 221 E-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 180 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 239 Query: 280 PDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV---------------- 320 P+ + S+ ++++S + P N P ++ Sbjct: 240 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQAS 299 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 S + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 300 TTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPL 355 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + + +I + A G + +RGD++ + + F + ++ Sbjct: 356 SNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLM 411 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 A +L+ L+ L A+R V ++ ++ Sbjct: 412 AAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAV 459 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 460 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 511 >gi|255021373|ref|ZP_05293421.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] gi|254969236|gb|EET26750.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] Length = 568 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 126/568 (22%), Positives = 220/568 (38%), Gaps = 42/568 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+ + L R + +V+ + + Y LY L D + L Sbjct: 19 QWQRRWQELPGNRRFAILAVLAAIFAGIVVTLLWSRPQGYGVLYTNLSNRDGGEVIAQLQ 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + N+ FRI+D G+ ISVP++ V R+ LAA GLP G+E+ D G + F++ Sbjct: 79 KLNVPFRITDGGAVISVPANEVYATRMKLAAVGLPR-GEGVGFEILDHEP-MGTSDFVEH 136 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186 + RALEG + RTI S+S + A+VH+ +P F +PTASV++ Sbjct: 137 VNYQRALEGSLERTIASLSAVERAKVHLAIPKPSVFLSQEEKPTASVLVSLYPGRELSAA 196 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMNI 245 I HLVAA+VP L +VTV+D G LL+A + L+ +A+ E I Sbjct: 197 QVAGIVHLVAASVPGLTDKNVTVVDQQGNLLSAQGGNDLGLQPGQLAYQRAVDRAYEHRI 256 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + LA +G R AV A+++ + + Y + + + P Sbjct: 257 EQILAPIVGAGGVRVAVSADIDFSHSESSSVTY---GNHQILSQQQNVRSSTGGGGPYGV 313 Query: 306 VTVEQNMPHVSDRKVPLPRS-------------------LENTDKKEEQSNYEINTKSIA 346 N P + + +N++++ + Sbjct: 314 PGALSNQPPGVAIAPLTAPTVSTLSPGDLIALAPTLKALAPTESSSDSTTNFDVDQTIVH 373 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGDT 405 T + ++RLS+AV+VN LG + + L +I ++V A G +++RGDT Sbjct: 374 TVNPVGSVKRLSVAVLVNDRLEGTGLGGAKQAKPLTAAQLQQIQQLVEDAIGYDAKRGDT 433 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + +M F + +S + + LV L+ +L+ F + L R+ Sbjct: 434 VKVVNMPFSGTEAVSSHLP-WWQQEWFLALLHGTLRYLVLLLLAILLYFGLIRPLLRIRG 492 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + S A G +A D + + N + Sbjct: 493 RREPTLAA-----------DSVARDGGQGEAGEVAADRGQPGPTTAREPVSMPANPLETD 541 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + R A+++++W SE Sbjct: 542 LYV--ARQLVMQDPGRAAQVVKEWLSSE 567 >gi|94987299|ref|YP_595232.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Lawsonia intracellularis PHE/MN1-00] gi|94731548|emb|CAJ54911.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Lawsonia intracellularis PHE/MN1-00] Length = 554 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 130/556 (23%), Positives = 242/556 (43%), Gaps = 18/556 (3%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + + + + T+ L + + ++F+ F++N Y LY L D N Sbjct: 5 ISQIIARITEFWNNSNLTQKLFIGGSAVFVTLIFIGLMFWINRTDYKVLYSNLGPEDANH 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + ++++DNG +I VP+S V RI +A +G S G+E+FD VN G Sbjct: 65 IIKTLQADKVSYQLADNGKTILVPASSVYDLRIKIAGEGG-MVGSGIGFEIFDAVN-VGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q I RAL+GE++RTI + +ARVH+V+P F + +P+ASV+++ NP Sbjct: 123 TDFVQRINYQRALQGELSRTISEFPNVESARVHLVIPQRSLFIEEQQKPSASVVLKLKNP 182 Query: 183 ---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAI 237 K + + +++ AV LD V++ DS GK L + + Sbjct: 183 SRKMDQKEVQGMVNMLVMAVEGLDKEHVSITDSLGKPLYFPNEDNLAGLSVTQREYKLKV 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +E I++ L +G + V +L+ + + IR +YDP+S V RS + S++ R Sbjct: 243 EQGLERRIDELLIPLMGQGKVIAKVNVDLDFNQKTIRREIYDPNSSVIRSEQRSEETNRG 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 +++ + V + S + ++ +NYEIN + + ++ R+ Sbjct: 303 QSNLESGSPDV-----NFRGDGPNGAMSTQEGTRETRTTNYEINREEQNIVGEVGQINRM 357 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AVVV+ + E G + L I +VS A G + RGDTI ++S+ F E Sbjct: 358 TVAVVVDGTYVKEPNGEYKFVPRSQEELNRIRLLVSHAIGFDRARGDTIEVSSIPFDEAD 417 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L ++++++ + L+ + L L + + + + Sbjct: 418 LPIEPPAA----EVIAKYAERLGKPLLNALLAFLFLMLVVRPVILALIRPKVESEAI--V 471 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 L P + + A ++ + + S + + + L + E Sbjct: 472 EGLEGLPSAEEQLALYETQEEAAKAAAMEAVRIASEEEEEFESLKHLEDIKNYTLQLAEN 531 Query: 538 NEERFAKILRKWARSE 553 N E+ +LR W + + Sbjct: 532 NIEQSILVLRGWMKDD 547 >gi|324018846|gb|EGB88065.1| flagellar M-ring protein FliF [Escherichia coli MS 117-3] Length = 512 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 126/535 (23%), Positives = 223/535 (41%), Gaps = 47/535 (8%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 3 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGL 62 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI +I + ARVH+ MP Sbjct: 63 PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPS 120 Query: 163 SFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F + P+ASV + AI HLV++AV L G+VT++D G LLT + Sbjct: 121 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 180 Query: 221 E-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 181 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 240 Query: 280 PDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV---------------- 320 P+ + S+ ++++S + P N P ++ Sbjct: 241 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQAS 300 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 S + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 301 TTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPL 356 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + + +I + A G + +RGD++ + + F + ++ Sbjct: 357 SNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLL 412 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 A +L+ L+ L A+R V ++ ++ Sbjct: 413 AAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAV 460 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 461 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 512 >gi|297538194|ref|YP_003673963.1| flagellar M-ring protein FliF [Methylotenera sp. 301] gi|297257541|gb|ADI29386.1| flagellar M-ring protein FliF [Methylotenera sp. 301] Length = 551 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 123/571 (21%), Positives = 220/571 (38%), Gaps = 45/571 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+++Q + +G + LIL + + + + P Y L+ D Sbjct: 8 ALINQGVNKGGTGLNSQLGNKLILVVAAAAVVAVMVVFWLWSQQPDYRVLFSNYTDKDGG 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + N+ ++ SD+G++I VP+S V +AR+ LA+ GLP N G+E+ + FG Sbjct: 68 AIVAELEKMNVPYKFSDSGTAILVPASQVHQARLKLASDGLPK-GGNIGFEIL-ENQKFG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ F++++ RALEGE+ R+IQSI + AR+H+ +P F + PTASV++ Sbjct: 126 VSQFVEQVNFQRALEGELERSIQSIGAVETARIHLAIPKASVFVRDQQSPTASVLLNLRA 185 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236 A+ HLVA++VPNL +VTV+D G LL+ N+ L + Sbjct: 186 GRSLDAQQVGAVVHLVASSVPNLPAANVTVVDQNGNLLSDTSKKMGANNLDPTQLKYIDD 245 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ- 295 IQ I + + +G N R+ AE++ + + +Y P+ K + + S + Sbjct: 246 IQQSIIKRVESIITPIVGAKNVRAEASAEIDFSSLEQAAEIYKPNQKPDDAAIRSLQSNE 305 Query: 296 --RSETSQPESAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTK 343 S N P + + ++K +N+E++ Sbjct: 306 SLTSNGGAATGVPGALSNQPPPNATAPITTPAGAAPGATAEAAPVNNQKNTTTNFEVDKT 365 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 + ++RL++AVVVN + + G+ + + +IN + A G N RG Sbjct: 366 VRYSQQGMGGIKRLNVAVVVNNMPVVDKKGKVTYRPLTAAEKTQINDLAMQAMGFNKERG 425 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D +T+ + F V + + + +V +V LL+ L + R Sbjct: 426 DALTVVNSSFAGEPEEIIPEVPMWKNPETIEYGKDALRFIVGIVVLLLIYKRALSPMLRK 485 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K G + L Sbjct: 486 LTAPSPKLLNAPGDEDAVVNLSGAEGQAQLAAVAG------------------------- 520 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + + + N A ++ W Sbjct: 521 SNSNLAAAKQLAKDNPRMVASVVANWTSGNE 551 >gi|329298594|ref|ZP_08255930.1| flagellar MS-ring protein [Plautia stali symbiont] Length = 573 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 122/548 (22%), Positives = 220/548 (40%), Gaps = 57/548 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I L++ NI ++ ++NG ++ VP+ + + LA QG Sbjct: 48 WAKAPDYRVLYNNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKEHELSLRLAQQG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL DK FG++ F ++I RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQINYQRALEGELARTIETLGPVKSARVHLAMPKP 165 Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV ++ +AI+H+V+++V L +G+VTV+D G+LLT Sbjct: 166 TLFVREQKSPSASVTLNLQPGRALDKGQIQAIQHMVSSSVAGLPLGNVTVVDQAGRLLTR 225 Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ E + L ++ + I L L N + V A++N D + + Y Sbjct: 226 SDSEGRDLNDAQLKYASEVEARYQQRIEAILNPILDQGNVHAQVTAQINFDRSEQTDEKY 285 Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV--------------- 320 P++ + S + + P N P ++ Sbjct: 286 QPNANPNNTAIRSHQTSTNVQNGSPYPGGVPGALSNQPAPANTAPVTNPQQQNNNTANGQ 345 Query: 321 --------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 S ++ + + NYE++ T + ++RLS+AVVVN Sbjct: 346 QNNNNAQNAGTSTSTAQSSGPSSSSRNDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNYR 405 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + D + +I + A G + RGD++ + + F + Sbjct: 406 ----DDRKGKAVVLNDQQIKQIEDLTREAMGYSQTRGDSVNVVNSQFNTTEPTGGDLP-- 459 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F ++ A +L+ L+ L +R + + Sbjct: 460 --FWQQQSFFEQLMTAGRWLLVALVAFILYRKMVRPQLLRKREAEKAAAEAAAARAAARE 517 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + N+D R +R+++ V Q R+ M E + A ++ Sbjct: 518 EEAAYSVQ---------INKDELDKERKSNNRMSAEVMSQ---RIRDMSENDPRVVALVI 565 Query: 547 RKWARSEI 554 R+W +E+ Sbjct: 566 REWMSNEL 573 >gi|261344120|ref|ZP_05971764.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541] gi|282567712|gb|EFB73247.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541] Length = 564 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 121/534 (22%), Positives = 234/534 (43%), Gaps = 41/534 (7%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA G Sbjct: 47 WFRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQSG 106 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP N+G+EL DK FG++ F ++I RALEGE++RTI+S+S + +ARVH+ +P Sbjct: 107 LPK-GGNTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPKP 164 Query: 162 GSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PTASV + AI H+V+++V L +V ++D TG+LLT Sbjct: 165 TLFVREQKLPTASVTVGLLPGRVLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLTN 224 Query: 220 NEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 N+ + + + + ++ ++ I L+ +G N + V A+++ + Y Sbjct: 225 NDNSQQSANSAQIKMTKEMETHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEEY 284 Query: 279 DPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327 P+ + + S+ S P N P + + + Sbjct: 285 KPNQTPDAAAIRSRQNSESMQNSNGGPGGVPGALSNQPVSAPSAPIEAENKDNTGKNNQN 344 Query: 328 --------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 +++E +NYE++ K T ++RLS+AV+VN G + Sbjct: 345 TTTTRNGTLNSQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQAQEGEKG-VEMKP 403 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + +I+ + A G +++RGD++ IT+ F + T + + + Sbjct: 404 LPPEMIKQIDALTREAMGYSTQRGDSLNITNSLFTSDAPAIEETSLL----NSPQFVSQA 459 Query: 440 INALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 ++ ++ ++ F+ ++ A++ + ++ ++ + V + D Sbjct: 460 LDYGKIILIAIIAWFMWRFGIKPQWVKYRKAQQAQADAETFIATQSTTPFVVEEEINED- 518 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 D + R + R+++ + Q R+ M E + + A ++R+W Sbjct: 519 -------MDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWLGK 562 >gi|46578729|ref|YP_009537.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. Hildenborough] gi|46448141|gb|AAS94796.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. Hildenborough] gi|311232601|gb|ADP85455.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris RCH1] Length = 538 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 118/551 (21%), Positives = 228/551 (41%), Gaps = 37/551 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + ++ + + + LV + +F ++N P Y LY L D NR+ L + Sbjct: 15 FWSRISMSQRVFIVGLALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKV 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 +++ ++G ++ VP+ + RI +A +G G+E+FD + G T F+Q+I Sbjct: 75 PYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTDFVQKINYQ 132 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190 RAL+GE+ RTI G+ ARVH+V+P F + +P+ASV+++ + +A Sbjct: 133 RALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQA 192 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNINK 247 I +LV AV +D V+V D++GK+L + ++ L +Q +E I + Sbjct: 193 IVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEE 252 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L +G + V A+++ + IR +YDP+ V RS + S+++ R + A Sbjct: 253 LLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRANLEAGAPD 312 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + S + ++ +N+EIN + + L RLS+AV+V+ Sbjct: 313 A-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTY 367 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 G + + I ++VS+A G + RGDT+ + S+ F L ++ Sbjct: 368 EKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQL 427 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 F+D L + L N + + I Sbjct: 428 FLDY------------------------ALRLGKPLLNALLVFLFLLLVVRPVVMALIRP 463 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS-YVSKQSDLRLLHMIEINEERFAKIL 546 V ++ + +++ + + + E N ++ I+ Sbjct: 464 KVEGEMIEGLEGLPAGEERLALIEGDEEVDALDALRKIEDIKAHAMQLAEQNMDQAVGII 523 Query: 547 RKWARSEIEDR 557 R W +++ + Sbjct: 524 RSWLKNDEGTK 534 >gi|77918796|ref|YP_356611.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380] gi|77544879|gb|ABA88441.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380] Length = 519 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 132/561 (23%), Positives = 227/561 (40%), Gaps = 50/561 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA ++ R R L L +V+L ++ F A F N Y L+ L+ +D Sbjct: 1 MAEETSPKNLIETIRQWPRKRQLSLLAVVLACVVFFAAIIFQANKADYQMLFGNLDSADA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L E + +R+ G +I +P+ V + R+ +A GLP G+E+FDK SF Sbjct: 61 AAVVDRLKEQKVPYRLEHGGRAIFIPADKVYEIRLAMAGSGLPRGGG-VGFEIFDK-QSF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179 G+T F Q+I +RAL+GE++RTI S++ + AARVH+ +P+ FR + +ASV+++ Sbjct: 119 GMTDFAQKINYLRALQGELSRTIASLAPVEAARVHLALPEKRLFRDQQQKASASVIVKLA 178 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQ 235 I +LVA +V LD+ V V+D G++L+ L Q Sbjct: 179 TGQSLRETQILGIVNLVAGSVDGLDVDQVAVIDDNGRVLSQTADHSGTGGTAPDMLEYQQ 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +E+ L LG+ N V A ++ ++ E YDP+ RS + S ++ Sbjct: 239 NLEQRLELRAQALLDRALGMGNSMVQVTAAIDYTQRERMEESYDPNQTAVRSEQSS--SE 296 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + V+ N+ + S T + E NYEI+ ++ Sbjct: 297 KGGVANAGGVPGVQTNIKNEKA-----GNSFIPTSRSNETINYEISKVVSKQVDSVGSIK 351 Query: 356 RLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 LS+AV+V + + + Q + LA I K++S A G+N RGD I + S Sbjct: 352 NLSVAVLVADRPVDNQGDTDKAPSYQPRDPKELAAIEKMISRALGLNPDRGDQIAVISRP 411 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F FNS + S +I + + L F + L ++ Sbjct: 412 FET--AFNSEPLVKSSPWSRIYQMVPMIKYALLALTAGLFYFFVIRPLLQILR------- 462 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 G + + + D A + S + Sbjct: 463 -GDGPMVEHYKTVEQLESEMAGLPDGSAAQEPPLSLPSGQPSE----------------- 504 Query: 533 HMIEINEERFAKILRKWARSE 553 + + A+I++ W + Sbjct: 505 ---QKDP---AQIIKAWLKDN 519 >gi|149377888|ref|ZP_01895617.1| flagellar M-ring protein FliF [Marinobacter algicola DG893] gi|149357830|gb|EDM46323.1| flagellar M-ring protein FliF [Marinobacter algicola DG893] Length = 565 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 113/563 (20%), Positives = 229/563 (40%), Gaps = 39/563 (6%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L R + L + + L +A + P+Y + + + ++ Sbjct: 23 ESRSDLIFGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDMSGYNPQDVT 82 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L +ID+R+ ++ VPS V AR+ LAA+G+ + GYEL D+ G + Sbjct: 83 TILDANSIDYRMDPRTGALLVPSDEVYNARLKLAAEGV-TDEQTMGYELLDQDRGLGTSQ 141 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINP 182 FM+ I+ R LEGE+ARTI S+ + AARVH+ +P+ F + PTASV + A Sbjct: 142 FMETISFRRGLEGELARTIGSMRTVRAARVHLAIPERSVFVRDARTPTASVFLEVIAGRR 201 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHE 240 + +I +LVA ++P + +VTV+D +G LLT E + + ++ Sbjct: 202 LEQEQIASIVNLVAGSIPEMSKDNVTVVDQSGNLLTGREDGGDSQQIEDQYDYTSRVEDR 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + + +G FR+ V A+L+ + + E +++P+ + RS R + ++R Sbjct: 262 LARRVASMVRPVVGDGRFRAEVTADLDFSSVEQAEELFNPEQQAVRSER--QMSERRAGG 319 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN--------TDKKEEQSNYEINTKSIATTHDNY 352 N P + + ++E NYE++ + Sbjct: 320 GASGIPGALSNQPPAQPTVPEQATADDEGNVQAPPVNVREESTRNYEMDRTVSYIRQELG 379 Query: 353 KLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++RLS+A+ V+ ++ + G + + + L + +V A G ++ RGD++T+ + Sbjct: 380 RIKRLSVALAVDDMKVVDPQTGEVSYEPWPEQELQRLTMLVRDAVGYSAARGDSVTVMNT 439 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN---IDD 468 F + F ++ ++ + L++ L + + + Sbjct: 440 AFAAEEQIEFEAPAFWEQP----WFWDLMKQVLAGLVILVLVLGLLRPTLKSLSGGGRSE 495 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + G L A+ + D++ L + + + Sbjct: 496 RRGDSDDGYGGLDGIEGGDALREAMHSQDDLLLPGA----------------TDSYDRQL 539 Query: 529 LRLLHMIEINEERFAKILRKWAR 551 L +I + R ++++R+W Sbjct: 540 NALKGLIAEDPARVSQVMRQWVN 562 >gi|291288216|ref|YP_003505032.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809] gi|290885376|gb|ADD69076.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809] Length = 555 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 123/564 (21%), Positives = 238/564 (42%), Gaps = 19/564 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA+ D QF + L + + +A+ + + ++ N P Y L+ + D Sbjct: 1 MALSDIASQFKDTYLKLSLLQKISVAAALAAVFISVAVIVYWANRPVYKTLFAGMTQDDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + +L E I +++ D G+ I++P V + R++LA + +P +G ELFDK +SF Sbjct: 61 ALVVDSLKEQRIPYKLEDGGAKITIPDQYVYETRLNLAKENIPRGGG-AGLELFDK-SSF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179 G+T FMQ ++ RAL+GE+ARTI ++ I ARVH+ + F A+V++R Sbjct: 119 GMTEFMQNVSYQRALQGELARTITALKEIQEARVHLTVSKDRLFIADEEASKAAVVLRLR 178 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIV 234 +AI LV+ AV L +V ++D+ G+LL+ E + L Sbjct: 179 SGASLGRAEVQAIASLVSGAVKGLSPENVQIVDTQGRLLSEFLDEENSPLMMTQSQLEYT 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + I+ ++E +N+ L A LG N + V AE++ + + + + D+ V RS + + + Sbjct: 239 KKIERDLERKVNEILGATLGKGNAVAKVTAEIDFNKRDVTKEE-YGDTPVLRSQQSMEIS 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++ P+ V+ N+ + + +K E+ N+EIN + Sbjct: 298 STNKPDGPQGIPGVQSNLAEPD---IGTAGRNQEYNKTEDTQNFEINKTITVEQKAYGTI 354 Query: 355 ERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +R+++AVVV+ ++ + Q + D + I +V+ A G N RGD I +T+ Sbjct: 355 DRVTVAVVVDDRKIRQQDDNGESTIVSQRRSDDEMRSIRNLVAMAVGYNEPRGDQIEVTN 414 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + + V L+ + LL FL + + + + Sbjct: 415 ISFDTTSKDHE--YDTLKREKTMELVGMVSKYLLAALIVLLFYFLVIRRILKRLDKPVTV 472 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + +T + + + +++ SK + Sbjct: 473 HEDGSITYGQIDGEMGIDITLDDSYP-KTLEELEREIESELEESSPMDVDTVKSKVMLKK 531 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 + + + A +L+ R + Sbjct: 532 IEEFATEDPDAMASLLKTLMRGDN 555 >gi|259907606|ref|YP_002647962.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|224963228|emb|CAX54712.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96] gi|283477448|emb|CAY73364.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163] Length = 561 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 118/545 (21%), Positives = 214/545 (39%), Gaps = 55/545 (10%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 F+ P Y L+ + D I LS+ N+ +RI G +I VP + V + R+ +A Sbjct: 45 LMFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMA 104 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 QGLP S G+EL D+ FG++ F +++ RALEGE+ARTI+++ I ARVH+ + Sbjct: 105 QQGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAV 162 Query: 159 PDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + +PTASV + AI HL+++AV L +VT++D G L Sbjct: 163 PKPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAANVTLVDQRGNL 222 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 LT + + + I+ + + I + LA +G N R+ V A+L+ Q+ + Sbjct: 223 LTQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDE 281 Query: 277 VYDPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSD---------------- 317 Y P+++ E+ S+ + + N P Sbjct: 282 QYQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGK 341 Query: 318 ------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 + ++ +E +NYE++ I T ++RLS+AVV+N Sbjct: 342 NANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQGAE 401 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 + LA IN +V A G + +RGD+I I + F + Sbjct: 402 ---GKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPP-----LWQ 453 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 ++ +LV ++ + ++ + + + Sbjct: 454 QHSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRH-----------------QDTTIKR 496 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + + L ++ + ++ + +L + E A ++R+W Sbjct: 497 LELEKEARKLALDEKNNAAEMTAHAKAKRRTDTEINGQQLRELAEQEPRVIALVMRQWLN 556 Query: 552 SEIED 556 E + Sbjct: 557 KEHKS 561 >gi|242278626|ref|YP_002990755.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638] gi|242121520|gb|ACS79216.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638] Length = 534 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 127/560 (22%), Positives = 241/560 (43%), Gaps = 37/560 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I++ L +F + ++ +++ + ++ F+ F++N Y LY KL D +R Sbjct: 5 IVEYLGKFQTFWSDRTVSQRIMIGGLAATVVIAFILMVFWLNQTEYRVLYTKLYAEDASR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L ++I DNGS+I VP+ V R+ +A +G GYE+FD+V G Sbjct: 65 VVSILQSTKEPYKIQDNGSTILVPADKVYDLRLKIAGEG-ALHGQGIGYEIFDEVQ-IGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180 T F+Q I RAL+GE+ARTI + ARVH+V+P F + P+ASV+++ Sbjct: 123 TDFIQRINYQRALQGELARTISEFPQVERARVHLVLPAKSLFIEEQVDPSASVVLKLKDG 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIVQA 236 K + + +LV +V L VT+ D G++L E + NI L Sbjct: 183 EKLADKQIKGVLNLVVMSVEGLKPEHVTITDMRGQVLYQPEDDGGLGLNITNSQLEYKSG 242 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +IE I + L +G D + V A+L+ + I+ YDPD +V RS + S++ R Sbjct: 243 LESKIEQRIQRLLMPIVGPDKVIAKVNADLDFRQRTIKTEAYDPDGQVARSEQTSEETTR 302 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + + +++ ++ +NYEIN + +L+R Sbjct: 303 GTANVDGGVP-----EANFRGDGFTGTATTQDSARETRTTNYEINKEEQQIIVPVGELKR 357 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 LS+AV+V+ G + + + I ++VS+A G + RGD + +++M F Sbjct: 358 LSVAVIVDGTYTKNPDTGEMTYVPRSEEEMQRIRELVSSAVGYDEVRGDIVEVSNMSFGM 417 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +F + + ++ R +N L+ + + L + + + E+ Sbjct: 418 QDMFGDEGLMRTMLEYAQRLGKPFLNGLLIFLFLI----LVVRPVIMALIKPRVAEEEID 473 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + L A+ + + + + + + + L + Sbjct: 474 EVAGLPEAGERLAIDESDLDEEALD-------------------TARRLENAKAQALQLS 514 Query: 536 EINEERFAKILRKWARSEIE 555 E N ++ ++L+ W + E Sbjct: 515 EKNMDQAVQVLKSWLKQEAA 534 >gi|315286666|gb|EFU46099.1| flagellar M-ring protein FliF [Escherichia coli MS 110-3] Length = 510 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 126/535 (23%), Positives = 224/535 (41%), Gaps = 47/535 (8%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 N P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGL Sbjct: 1 ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 60 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP Sbjct: 61 PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 118 Query: 163 SFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F + P+ASV + AI HLV++AV L G+VT++D G LLT + Sbjct: 119 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 178 Query: 221 E-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y Sbjct: 179 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 238 Query: 280 PDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV---------------- 320 P+ + S+ ++++S + P N P ++ Sbjct: 239 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQAS 298 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 S + ++ E SNYE++ T + ++RLS+AVVVN L + Sbjct: 299 TTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPL 354 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + + +I + A G + +RGD++ + + F + ++ Sbjct: 355 SNEQMKQIEALTREAMGFSEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDQLL 410 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 A +L+ L+ L A+R V ++ ++ Sbjct: 411 AAGRWLLVLLVAWLLWRKAVRPQLTRRAEAVKTVQQQAQARE------------EVEDAV 458 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 459 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 510 >gi|257095338|ref|YP_003168979.1| flagellar MS-ring protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047862|gb|ACV37050.1| flagellar M-ring protein FliF [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 578 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 118/583 (20%), Positives = 222/583 (38%), Gaps = 64/583 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + L + ++ L + ++L + + L +AA + + L+ + D I Sbjct: 16 NPLDRAREALARLTNRQKVLLIVSVAAVVTLLIAAATLLRQGEFKVLFSNIGERDGGAII 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + N+ ++ S++GS+I V S V R+ LAAQGLP + G+EL + FG++ Sbjct: 76 AALEQMNVPYKFSESGSAILVHDSRVHDVRLRLAAQGLPRGGA-VGFELM-EAQKFGVSQ 133 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 F +++ R LEGE++RTIQSI+ + AARVH+ +P F + +P+ASV++ Sbjct: 134 FAEQVNYQRGLEGELSRTIQSIAAVQAARVHLAIPKPSVFMREELKPSASVLLNLYPGRS 193 Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239 + I++LVAA+VP L VT+LD +G LL+ + E + + +Q ++ Sbjct: 194 LEPRQIAGIQNLVAASVPQLAPTSVTLLDQSGALLSQMKSKLLEAGLDPTQVKYIQEVEA 253 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR--S 297 + + LA +G N R + A+++ + + P++ S+ + S Sbjct: 254 SVIKRVEDILAPIVGPGNARVQIAADIDFSQSEQTAETHRPNATPPEISIRSQQSSETAS 313 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-------------------------------SL 326 + + N P V Sbjct: 314 TSPAAQGVPGALSNQPPVPATAPLTQPPVPGAGGAAPATPPVPGQINVAGVQAPVASVGP 373 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386 + K NYE++ ++RLS AVVVN+ + G++ ++ D+ + Sbjct: 374 PISTSKNSTVNYEVDKTIRHVRQAVGTIKRLSAAVVVNQRKEVAKDGKAVNKPLPDAEVK 433 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 +I+ +V A G N RGDTI++ + F + + ++ V Sbjct: 434 QISDLVKEAMGFNKERGDTISVANAPF--TVIDKDEGLPPWRDPETVSLTKDLVKYGVIA 491 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 + + L + A G I L Sbjct: 492 AIIAYLLLGVVRPLLKTMLEKPATTESGVGGRIDVVAGEEGEEEATENLPTAAEL----- 546 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 ++ + + + + A I+++W Sbjct: 547 -----------------LEKRIAAARALAQQDPQLVANIIKEW 572 >gi|167736645|ref|ZP_02409419.1| flagellar MS-ring protein [Burkholderia pseudomallei 14] Length = 465 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 116/444 (26%), Positives = 196/444 (44%), Gaps = 15/444 (3%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + L + I +A + +P Y LY L D I AL +AN+ Sbjct: 24 GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 83 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 ++ +D G +I VP++ V + R+ LAA GLP S G+EL D FG++ F +++ Sbjct: 84 PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 141 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190 RALEGE+ RT++SI+ + AARVH+ +P F + P+ASV++ A Sbjct: 142 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 201 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 + +V+++VP++ +VT++D G LLT + L VQ I+ + I+ LA Sbjct: 202 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 261 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307 G N RS V A+++ + Y P+ ++S S+ S S Sbjct: 262 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 321 Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + P + +D+K+ +NYE++ ++RLS+ Sbjct: 322 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 381 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + F Sbjct: 382 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 441 Query: 420 NSGTVQVSFMDILSRHFATVINAL 443 + D++ Sbjct: 442 FANLPWWRQPDMIELGKDIAKWLG 465 >gi|310764888|gb|ADP09838.1| Flagellar basal-body M-ring protein [Erwinia sp. Ejp617] Length = 561 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 119/544 (21%), Positives = 216/544 (39%), Gaps = 55/544 (10%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ P Y L+ + D I LS+ N+ +RI G +I VP + V + R+ +A Sbjct: 46 MFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQ 105 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S G+EL D+ FG++ F +++ RALEGE+ARTI+++ I ARVH+ +P Sbjct: 106 QGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVP 163 Query: 160 DMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV + AI HL+++AV L G+VT++D G LL Sbjct: 164 KPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAGNVTLVDQRGNLL 223 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T + + + I+ + + I + LA +G N R+ V A+L+ Q+ + Sbjct: 224 TQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQ 282 Query: 278 YDPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSD----------------- 317 Y P+++ E+ S+ + + N P Sbjct: 283 YQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKN 342 Query: 318 -----RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + ++ +E +NYE++ I T ++RLS+AVV+N Sbjct: 343 ANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQGAE- 401 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + LA IN +V A G + +RGD+I I + F + Sbjct: 402 --GKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPP-----LWQQ 454 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 ++ +LV ++ + ++ + + + Sbjct: 455 HSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRH-----------------QDTTIKRL 497 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + L+ ++ + ++ + +L + E A ++R+W Sbjct: 498 ELEKEARKLELDEKNNAAEMTAHAKAKRRTDTEINGQQLRELAEQEPRVIALVMRQWLNK 557 Query: 553 EIED 556 E + Sbjct: 558 EHKS 561 >gi|332531123|ref|ZP_08407037.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624] gi|332039408|gb|EGI75820.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624] Length = 570 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 111/581 (19%), Positives = 220/581 (37%), Gaps = 66/581 (11%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + +L R + + LA +++ + + + A + + L+ L D I L++ Sbjct: 9 LSQRFAALERGQKMRLALGVVLVVAVLLGALLMNHKTDWRVLFSGLSDKDGGAIIAQLTQ 68 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + ++ ++ G +I VP+ V R+ LA+QGLP S +G+EL + + FG T F + + Sbjct: 69 MQVPYQYTEGGGAILVPADKVHDTRLRLASQGLPK-GSVTGFELM-ENSRFGATQFQERV 126 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187 R LEGE+ R+IQ++S + +ARVH+ +P F + +P+ASV++ Sbjct: 127 NFQRGLEGELTRSIQALSSVQSARVHLALPQQNGFFREQQKPSASVLLTLYPGRILDRAQ 186 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEM 243 I HLV+++VP + V+++D TGKLL+ + + + L VQ I+ + Sbjct: 187 IAGIVHLVSSSVPEMKPEAVSIVDDTGKLLSQSPDGAAGQDGVDTQQLKYVQQIEAQYRQ 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I L +G N ++ V A+++ + + P+ + S+ S P Sbjct: 247 RILDILEPVVGKGNVQAQVTADVDFSQSEQTSETHTPNQAPDTGAVRSQQTLESTNPGPA 306 Query: 304 SA---VTVEQNMPHVSDRKV-------------------------PLPRSLENTDKKEEQ 335 N P + + + +KE Sbjct: 307 GPSGIPGAVSNQPPGPNSAPINAAAQALAPGVPQAQAQAQGRAGQTAQAAAPVSTRKESV 366 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 NYE++ ++RLS AVVVN+ + G A + ++ +V + Sbjct: 367 INYEVDKTVRVVRAARGAIKRLSAAVVVNQRTQADARGNVAPVPLTQQQVDQMTALVRES 426 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G N RGD++ + + F+ + + + + + ++ L+V F Sbjct: 427 IGFNGDRGDSVNLMNAPFVVDAKADESL-AFWQQPAVQELARDLAWPVGAVLLALVVLFG 485 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 + + + + LD+ + Sbjct: 486 VVRPVLKAMQAPPPPQ-----------------------------LDALLDEDLELGLQD 516 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + + ++ + N A I++ W S +D Sbjct: 517 PIKKGPRIQERQLEEARKLARENPAAVAGIVKNWIGSNKDD 557 >gi|208434294|ref|YP_002265960.1| flagellar basal-body M-ring protein [Helicobacter pylori G27] gi|208432223|gb|ACI27094.1| flagellar basal-body M-ring protein [Helicobacter pylori G27] Length = 567 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDPSDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGTSKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|160896087|ref|YP_001561669.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1] gi|160361671|gb|ABX33284.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1] Length = 566 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 116/575 (20%), Positives = 228/575 (39%), Gaps = 61/575 (10%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + T++ R L ++ ++ ++ AA F P Y L+ L D I LS+ Sbjct: 20 LQQRWTAMDRGARLRWGAIAVLLVVALGAAAMFYRQPDYKVLFSNLSDKDGGAIVAQLSQ 79 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ +R ++ G +I +PS V R+ LA QGLP S +G+EL + + FG+T F + + Sbjct: 80 MNVPYRYTEGGGAILIPSDRVHDVRLKLATQGLPK-GSVTGFELM-ENSKFGITQFQERL 137 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187 R LEGE+ R+IQ+++ + +ARVH+ +P+ F + +P+ASV++ Sbjct: 138 NFQRGLEGELTRSIQALAAVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRVLDRTQ 197 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNI 245 I HLVA++VP + V++LD +GKLL+ + + L+ Q I+ + I Sbjct: 198 IAGIVHLVASSVPEMAPTAVSILDDSGKLLSQSPDGNANAVDMQQLNYTQQIEQQYVRRI 257 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----SQ 301 + L +G +N ++ V AE++ + + P+ + + S+ S Q Sbjct: 258 LEILEPVVGKNNVKAQVSAEMDFSQTESTSEQHRPNQSSDAGVVRSQQVVESTGEQKPPQ 317 Query: 302 PESAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 P N P + + + + K+E +NYE++ T Sbjct: 318 PTGIPGATSNQPPQNASAPVNGANPAPQAADGQNAARSASKRESITNYEVDKTVRHTRGS 377 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS------------YLAEINKIVSAATGI 398 ++RL+ AVV+N + +A + A++ +V G Sbjct: 378 TGSIKRLTAAVVINAPLVAAPAPAAAGAATDAATVAAAARGLTAAQQAQLLTLVRETVGY 437 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ RGD++ + S F+++++ V + + ++ + + ++ + Sbjct: 438 SAERGDSVNLVSTPFVQDEVP--ADVPLWRQPEVLDMARSLGVPIGLALFGAILLLGLVR 495 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + + + P +A L P Sbjct: 496 PMLKGRKTVAVGGQLNAIEGEQLDRPALAAPAVDLSPTQE-------------------- 535 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + N A I++ W E Sbjct: 536 ------QVRLEQARQLAKQNPIAVANIVKTWINGE 564 >gi|94264093|ref|ZP_01287892.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] gi|93455509|gb|EAT05699.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] Length = 530 Score = 343 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 126/559 (22%), Positives = 231/559 (41%), Gaps = 41/559 (7%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + Q +L + + V+ + +A L+ L D + Sbjct: 5 REIFTQVVSIFNNLSMIQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAEV 64 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E NI +R+SD G++I VPS+ V + R+ LA +GLP G+E+FD+V G T Sbjct: 65 VERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGTT 122 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-- 181 F+ + RAL+GE+ARTI+ I ARVHI P F + TASV +R Sbjct: 123 DFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGRD 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQH 239 ++I +LV+ AVP L +T++D+ G+LL ++ + G L Q I+ Sbjct: 183 QLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIEE 242 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + L +GV+ R++V A+++ + + E ++DP+ +V RS ++ +A + Sbjct: 243 SARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-RG 301 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 +Q + + +D S + + + NYEI+ ++ T ++RLS+ Sbjct: 302 NQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLSV 359 Query: 360 AVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 AV+V+ + + + + +++S A G N RGD + + SM F Sbjct: 360 AVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFAL 419 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + +++ A LV+L+ V + RL D + Sbjct: 420 SAITEPEEDPMDRWREMAQWLAM---PLVYLLIAFGVMLFVVRPFLRLLAAKDLEAKRAS 476 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 ++ + + L D R+ + Sbjct: 477 QRATVGRAEGEAEDEDDLSMGPRGLSDQ-------------------------ERIYRLA 511 Query: 536 EINEERFAKILRKWARSEI 554 + + +R A ++R+W R E+ Sbjct: 512 QSDPDRAADLVRRWLREEV 530 >gi|300994277|ref|ZP_07180829.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1] gi|300304942|gb|EFJ59462.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1] Length = 508 Score = 343 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 125/532 (23%), Positives = 223/532 (41%), Gaps = 47/532 (8%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGLP Sbjct: 2 PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 61 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP F Sbjct: 62 GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 119 Query: 166 KIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-M 222 + P+ASV + AI HLV++AV L G+VT++D G LLT + Sbjct: 120 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTS 179 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y P+ Sbjct: 180 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNG 239 Query: 283 KVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLP 323 + S+ ++++S + P N P ++ Sbjct: 240 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTS 299 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 S + ++ E SNYE++ T + ++RLS+AVVVN L + + Sbjct: 300 NSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNE 355 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 + +I + A G + +RGD++ + + F + ++ A Sbjct: 356 QMKQIEALTREAMGFSEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAG 411 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 +L+ L+ L A+R V ++ ++ Sbjct: 412 RWLLVLLVAWLLWRKAVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVR 459 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 460 LSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 508 >gi|332702978|ref|ZP_08423066.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis Bay] gi|332553127|gb|EGJ50171.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis Bay] Length = 533 Score = 343 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 126/560 (22%), Positives = 245/560 (43%), Gaps = 38/560 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + + + +++ + +++F+ ++N P Y LY L D R Sbjct: 5 LQDSLNKLTAFWSDRSMAQRVMIGGLAASLVVIFLLLIVWLNQPDYKILYSNLPPEDAGR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L + ID+++ D+G ++ VPS V + R+ +A +GL + G+ELFD+V G Sbjct: 65 VAEQLKKQKIDYKLEDSGKTVLVPSDQVYQLRLDMAGEGL-LHGTGLGFELFDEV-KIGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180 T F+Q I RAL+GE++RTI + ARVHIVMP F + + PTAS++++ Sbjct: 123 TDFVQRINYQRALQGELSRTITEFPEVERARVHIVMPHKSLFIEEQSPPTASIILKLAEG 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237 K EAI +LV+ +V LD +TV D GKLL + + + + L + Sbjct: 183 RELNQKQIEAIVNLVSLSVEGLDKSQITVADVAGKLLFQADSDDSVKGLTLGQLEYRTTL 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 Q +E I + L +GV + V A+++ + I + +YDP S V RS + +++ + Sbjct: 243 QRNLEQRIEQLLTPVVGVGKVIARVNADVDFSQKTITKDIYDPSSAVVRSEQRTEEQTKG 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + P+ S ++++++ +N+EIN + + +++RL Sbjct: 303 RANIEGGEP-----DPNFRGDGFNGSLSSQDSNRETRTTNFEINKEQQSIVVPVGEIDRL 357 Query: 358 SIAVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 S+AV+V+ G + + I ++V G + RGD I ++++ F E Sbjct: 358 SVAVIVDGTWQAPAEGEGEPVWVPRSQEEIQRITELVRNTVGFSQSRGDAIEVSNISFGE 417 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +F ++ + ++ + R ++N L+ + L L + + E+ Sbjct: 418 PDMFGEPSLMQTMLEYMQRLGKPILNGLLIFLFLL----LIVRPVVLSLIKPKVAAEEIE 473 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L A+ G+ + + + + L + Sbjct: 474 ELISLPEADERLALEEGVQDEVLDL--------------------NRRLELAKAQALQLA 513 Query: 536 EINEERFAKILRKWARSEIE 555 E + ++ +L+ W + E Sbjct: 514 EKDMDQAVAVLKTWLKQEAA 533 >gi|317052367|ref|YP_004113483.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5] gi|316947451|gb|ADU66927.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5] Length = 558 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 132/564 (23%), Positives = 239/564 (42%), Gaps = 27/564 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV---NSPHYDNLYVKLEVS 58 + + + Q + L RT+ + LA VI ++ + + + P L+ L + Sbjct: 4 SFKELISQLSRVLQKLSRTQQITLALVIGASVITIITLIIWAVVASRPGNQVLFSNLAME 63 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D ++ L+E + + I ++G +I VP ++V + R++LA QGLP S G+E+FD Sbjct: 64 DAGEVAAKLAELRVPYEIHNDGRTILVPGNVVHETRLNLAQQGLPR-GSGVGFEIFDSA- 121 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 G+T F+Q++ RAL+GE+ RTI +I GI +ARVHI +P+ F ASV +R Sbjct: 122 GIGMTEFIQKVNFRRALQGELGRTISAIDGIESARVHIALPERSLFISQDRGAEASVALR 181 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLS 232 + I HLV+++V L VTV+D G++L E + L Sbjct: 182 LSPHTRLSGDQVKGIIHLVSSSVEGLTPEGVTVVDEQGRILNDLIQERSEESTLSVTQLM 241 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + ++ +++ ++ L + LG N S V EL+ D + + YDP V RS + + Sbjct: 242 YQRNMERNLQIALDNLLVSVLGQGNSYSNVSLELDFDKVEQQIEAYDPA-NVPRSEQRIE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++ +Q V N+ D P + ++ E +NYE+ T Sbjct: 301 EREQGREAQ-GGIPGVRANIADQDD---PEAGLMTTRSREVETTNYEVGRTLTQITRSRG 356 Query: 353 KLERLSIAVVVNKGRLTEVLG---RSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++RL++AV VN + + + Q + L +I +V +A G N RGD + +T Sbjct: 357 QIKRLTVAVAVNGNYVQQQADGVSQVVYQPRSSEELDKITALVQSAIGYNEGRGDRVVVT 416 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ F E + + + ++ L + L + + + Sbjct: 417 NLQFGEPPKSR-----WQELMEMQDLWKEMLKYLGIALFFLFAFIFIIRPIVKWVTDMTR 471 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E+ V T L I S S S + K Sbjct: 472 DEDELKKTFGTGQKKPKQLVPTQLPKTLAELEAEMESQIDSESSVSASAVRG---KVIRK 528 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 +L +++ N A+++R W + Sbjct: 529 KLSDIVQENPAGAAQLIRIWINDD 552 >gi|183598654|ref|ZP_02960147.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827] gi|188020839|gb|EDU58879.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827] Length = 562 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 116/530 (21%), Positives = 222/530 (41%), Gaps = 35/530 (6%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 ++ SP Y L L D I L++ N+ ++I+DNGS+I VP+ V + R+ LA G Sbjct: 47 WLRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPAEKVHELRLKLAQSG 106 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP N+G+EL DK FG++ F +++ RALEGE++RTI+S+S + ARVH+ +P Sbjct: 107 LPK-GGNTGFELLDKEQ-FGISQFSEQVNYQRALEGELSRTIESLSPVQNARVHLAIPKP 164 Query: 162 GSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + PTASV + AI H+V+++V L +VT++D TG+LLT Sbjct: 165 TLFVREQKLPTASVTVGLLPGRMLDEGQITAIVHMVSSSVSGLTAANVTIVDQTGRLLTN 224 Query: 220 NEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 N+ + + + + ++ ++ I ++ +G N + V A+++ + Y Sbjct: 225 NDNSQQSANNAQIKMTKEMESHLKQRIEDIISPLVGRANVHAQVTAQMDFSKVEQTSEEY 284 Query: 279 DPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMPHVSDRKVPLPRSLENT------ 329 P+ + S+ +S + N P + + Sbjct: 285 KPNQTPNSAAVRSRQNSQSSQNNTSGVGGVPGALSNQPPSAPSAPISTDNKGANSAQNSP 344 Query: 330 -------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + +E +NYE++ K T ++RLS+AV++N G + Sbjct: 345 SNNGSSLSQSDETTNYEVDRKISHTQRQIGVIDRLSVAVIINYLPQDGEDGTQQMKPLSP 404 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 + +I + A G +S RGD+++IT+ F + + + +++ Sbjct: 405 EMMQQIESLTREAMGYSSTRGDSLSITNSLFTNDTVVEEQPSMLENPQFIAQVLDYGKII 464 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 L+ ++ L+ F + A+ + P+ ++ Sbjct: 465 LIAIIAWLMWRFGVKPQWVKYRQTQQAQSAAEVFVAAQPKTPLVVDEEINEDMDEQTRRR 524 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + Q + + ++ R+ M E + + A ++R+W Sbjct: 525 LTRQRVSAEIQS--------------QRIREMAEKDPQVVAMVIRQWLGK 560 >gi|302383920|ref|YP_003819743.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC 15264] gi|302194548|gb|ADL02120.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC 15264] Length = 542 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 146/552 (26%), Positives = 243/552 (44%), Gaps = 17/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F + G R+ ++ V + +A V LY L++ + I+ + Sbjct: 1 MGGFTAALQRFGIGRLAMVLGVGAGVAAVLVALMLRVGQAPDALLYSNLDLREAGEITAS 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L ++ I + +GS+I V VG+AR+ LA +GL +S S GYELFD + G T F Sbjct: 61 LEQSGIPYSTRGDGSTIMVNRDQVGEARLMLAGKGLVTSGS-VGYELFDTQSVLGQTEFQ 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185 Q+I+ RAL+GE+ARTI S+ G+ +ARV I +P F++ A PTASV++ Sbjct: 120 QQISEQRALQGELARTIMSMRGVQSARVAIALPKRELFQQDAAEPTASVVVGLGGRKLSS 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMN 244 AIR ++A++VPNL VTV+D T + L A + E + A + +++ Sbjct: 180 DQVRAIRAVIASSVPNLKPNKVTVVDETNQTLAAADDEAGFSSATAEEAKGATEAQLQQR 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + +G R V A+++M +E YDPD +V RS + + T + Sbjct: 240 IKDLVEGVVGPGAARVQVTADIDMTRSTTQEQKYDPDGQVVRSTSTNGTQSQDTTGVADG 299 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 T N+P + S E E +NYEI+ + T + ++++LS+AV V+ Sbjct: 300 GATATNNIPGGAAPATTPAGSTE--SANTETTNYEISNTTTTTVKEPGEVKKLSVAVAVD 357 Query: 365 KG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 E G + + + +I +V AA G N RGD + +T++ F + L ++G Sbjct: 358 GKLTPAAEPGGEATYAPRTAEEITQIEDLVKAAMGFNEERGDQVRVTNVRFNRDALVSAG 417 Query: 423 TVQ--VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 ++ + LV LV LL+ F L L + + + GG I Sbjct: 418 GTDGGSPLLNFTKNDIMRGVELLVLLVTALLLIFFVLRPLLKSASGGGQQMAMAGGGQIP 477 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 ++ V ++ R +RI V S ++ +E + + Sbjct: 478 VTSLQTTMVGG--------SMGQLPGPSEMEQRIDIARIEGQVKASSVKKVADFVEKHPD 529 Query: 541 RFAKILRKWARS 552 ILR W Sbjct: 530 ESTSILRSWVHE 541 >gi|300931151|ref|ZP_07146498.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1] gi|300461008|gb|EFK24501.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1] Length = 507 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 124/532 (23%), Positives = 223/532 (41%), Gaps = 47/532 (8%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P Y L+ L D I L++ NI +R S+ +I VP+ V + R+ LA QGLP Sbjct: 1 PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 60 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + G+EL D+ FG++ F +++ RALEGE++RTI++I + ARVH+ MP F Sbjct: 61 GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 118 Query: 166 KIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-M 222 + P+ASV + AI HLV++A+ L G+VT++D G LLT + Sbjct: 119 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSALAGLPPGNVTLVDQGGHLLTQSNTS 178 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 R++ L ++ I+ I L+ +G N + V A+L+ +++ E Y P+ Sbjct: 179 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNG 238 Query: 283 KVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLP 323 + S+ ++++S + P N P ++ Sbjct: 239 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTS 298 Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383 S + ++ E SNYE++ T + ++RLS+AVVVN L + + Sbjct: 299 NSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNE 354 Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 + +I + A G + +RGD++ + + F + ++ A Sbjct: 355 QMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAG 410 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 +L+ L+ L A+R V ++ ++ Sbjct: 411 RWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVR 458 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 459 LSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 507 >gi|293395603|ref|ZP_06639886.1| flagellar M-ring protein [Serratia odorifera DSM 4582] gi|291421922|gb|EFE95168.1| flagellar M-ring protein [Serratia odorifera DSM 4582] Length = 573 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 129/589 (21%), Positives = 238/589 (40%), Gaps = 64/589 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ L + L I + +A + SP Y LY L D I Sbjct: 10 NRENGLQAQWNRLRANPKIPLLVAASAAIAIVVALLLWAKSPDYRVLYSNLNDRDGGAIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L++ NI +R ++NG+++ +P+ V + R+ LA QGLP + G+EL D+ FG++ Sbjct: 70 TQLTQMNIPYRFAENGAALMIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182 F ++I RALEGE++RTI+S+ + ARVH+ +P F + P+ASV ++ Sbjct: 128 FSEQINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTLNLQPGRA 187 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241 AI ++VA++V L G+VTV+D G+LLT ++ + L +++ Sbjct: 188 LDDGQINAIVYMVASSVAGLPPGNVTVVDQAGRLLTQSDGSGRDLNASQLKYTSEVENRY 247 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298 + I LA +G N R+ V A+++ ++ + Y P+ E++ S+ +S+ Sbjct: 248 QRRIEAILAPIVGSANVRAQVTAQIDFSIREQTDEQYQPNPTPEKAAIRSRQLSQSDQLG 307 Query: 299 -----------TSQPESAVTVEQNMPH----------------------VSDRKVPLPRS 325 ++QP +A T P + Sbjct: 308 GQPVGGVPGALSNQPSAAPTAPIETPAADATANTNTTANNAPPAARQTSNTATGNGNGNG 367 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +++E +NYE++ T H + ++RLS+AVV+N L Sbjct: 368 QPQNSRRDETTNYEVDRTIRHTQHKSGAVQRLSVAVVLN---TLGSDKDGKPLPMSKQQL 424 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I +V A G + RGDT+ + + F E ++ +++NA + Sbjct: 425 TQIESLVREAMGYSGTRGDTLNVVNSPFTETEMTAGELP----FWQTQSFIDSLLNAGRY 480 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L+ L+ L + ++ + Sbjct: 481 LLILLVAWLLWRKLV-------------RPQLQQRQAQQQAAIAAASAPAARPADAGKPS 527 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 D + Q R+++ V Q R+ + + + A ++R+W +EI Sbjct: 528 NDELVQHKRSQQRVSAEVQSQ---RIRDLADKDPRVVALVIRQWMSNEI 573 >gi|317492408|ref|ZP_07950837.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919747|gb|EFV41077.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium 9_2_54FAA] Length = 573 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 119/546 (21%), Positives = 218/546 (39%), Gaps = 59/546 (10%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y LY + D I L++ NI +R +DNG+++ +P+ V + R+ LA QG Sbjct: 52 WAKSPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFADNGTALLIPADKVHETRLRLAQQG 111 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + ARVH+ +P Sbjct: 112 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQTARVHLALPKP 169 Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + +P+ASV ++ AI ++V+++V L G+VTV+D G LLT Sbjct: 170 SLFVREQKQPSASVTLNLQPGRALDEGQINAIVYMVSSSVAGLPAGNVTVVDQGGHLLTQ 229 Query: 220 NEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 ++ R++ L ++ I+ I L +G N + V A+++ ++ + Y Sbjct: 230 SDGTGRDLNATQLKYANEVESRIQRRIEAILQPMVGNGNVHAQVTAQIDNAVREQTDEEY 289 Query: 279 DPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLP------------ 323 P+ ++ S+ S S N P + Sbjct: 290 KPNQAPNQAAVRSQQLSDSSQSGGQLSGGVPGALTNQPAPAATGNITNPPQAGGANANTA 349 Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 S + +++E NYE++ T ++RLS+AVVVN Sbjct: 350 NAQRPASSTIDTNGRRSSSASNARRDETINYEVDRTIRHTQQKAGNVDRLSVAVVVNYTT 409 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 L ++ +V A G ++ RGDT+ + + F + + Sbjct: 410 ----NASGKSIPLTPQQLEQVTALVREAMGFSATRGDTLNVVNTPFTTSAEESGDVP--- 462 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 S F ++ +L+ ++ L ++ L N A + Sbjct: 463 -FWQQSSFFDLLMTLGRYLLVLIVAFILWRKLVKPLLNKQLA---------------NAQ 506 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + +N + ++Q R+ M E + A ++R Sbjct: 507 PARRVEPTPIVTTPVQPAKPSNEEIQNRRKSQQRATAEQQAQRVRDMAEQDPRVVALVIR 566 Query: 548 KWARSE 553 +W +E Sbjct: 567 QWMSNE 572 >gi|298530643|ref|ZP_07018045.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans ASO3-1] gi|298510017|gb|EFI33921.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans ASO3-1] Length = 532 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 128/556 (23%), Positives = 244/556 (43%), Gaps = 36/556 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +++ + +S + +++A + L I F FF+ P Y L L D + Sbjct: 7 DLQEKVTSLW---SSSSVPQRILVAGLGLSVIAAFAFLMFFITRPDYRVLSSDLYPEDAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ L N+ +++ D+G++I VP+ V K R+ ++ +G+ G+ELFD G Sbjct: 64 RVVEILESENVRYQLEDDGTTILVPADQVHKMRLAISGEGVLR-GEGMGFELFD-DTGIG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 T F+Q + RAL+GE+ARTI S + ARVH+VMP+ F + P+AS++++ Sbjct: 122 QTDFVQNVNYQRALQGELARTISEFSEVEHARVHLVMPERSLFIEEETPPSASIVLQLRS 181 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237 ++I +LV V +D VT+ D++G++L + + + L Sbjct: 182 GQRLESSQIQSIVNLVVTGVEGMDSDRVTISDTSGRVLYEPQKDLLDGMSSTQLEYQLNF 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 Q ++E I L F G + V A+L+ D + R+ ++DPD V RS + S + Sbjct: 242 QRDLERRIEHMLTPFAGPGRVIAKVNADLDFDRRTTRQEIFDPDGSVVRSEQRSTEESSG 301 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T E + P + + T + + +N+EI+ + ++RL Sbjct: 302 GTFMEEGVP------EPDFQQGFEGPATTQETSRSDRTTNFEISREEHNIVASVGSVDRL 355 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AV+V+ +T+ G + D + I ++V A G + RGD+I ++S+DF + Sbjct: 356 SVAVLVDGQHVTDDAGEMVYEPLADEEMQRIQQLVERAVGFDQERGDSIEVSSVDFGAPE 415 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + MD L+++F T L+ + LL L + + + E Sbjct: 416 VE----PEPTLMDNLAQYFQTFGKPLLNALLVLLFLLLVVRPIIMTILKPKVAEEEGEEA 471 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 L A+ G+ + ++ + + + + E Sbjct: 472 EGLPEGGEREALAPGMSEEE-----------------VEGMQDQKRVEGIKVFASQLAEE 514 Query: 538 NEERFAKILRKWARSE 553 N ++ +++KW + E Sbjct: 515 NFDQAFAVVKKWLKEE 530 >gi|295097226|emb|CBK86316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 511 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 119/539 (22%), Positives = 216/539 (40%), Gaps = 50/539 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ P Y L+ + D I LS+ N+ +RI G +I VP V + R+ LA Sbjct: 1 MFWAKEPGYRVLFSNISDEDGGAIVAQLSQMNVPYRIDAPGGAILVPEGQVHEVRMKLAQ 60 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S G+EL DK FG++ F +++ RALEGE+ARTI+++ I +ARVH+ P Sbjct: 61 QGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIENLGPIRSARVHLATP 118 Query: 160 DMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +PTASV + AI HL+++AV L +VT++D G+LL Sbjct: 119 KQTMFVREQKQPTASVTVNLIQGRTLDEGQVIAITHLISSAVTGLTAENVTIVDQRGELL 178 Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 T + + L I+ + + I + LA +G N R+ V A+++ Q+ + Sbjct: 179 TQSGLRGLQTS-QLKYTSEIESDYQQRIQRILAPLVGSKNIRAQVTAQIDFTQQEQTQEQ 237 Query: 278 YDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMPHVSDRKV-------------- 320 Y P++ ++ + S+ +SE N P Sbjct: 238 YQPNADPQKMVIRSRQTSQSEQGNGRGNGGVPGALTNQPPAPATAPLTQPLDKPAAQTST 297 Query: 321 ---PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 RS + +E +N+E++ + +++RLS+AVV+N Sbjct: 298 AGTGNDRSQPYNNHNDETTNFEVDRTLTHIKNAMGRIDRLSVAVVINHLPQGAE---GKP 354 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 ++ L IN +V A G + RGD++ I + F + + + Sbjct: 355 GPLSEAELNRINALVKEAVGYTASRGDSVNILNSPFNGVEEEELPP-----FWKQDKFYQ 409 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 ++ +LV ++ + + +++ M + Sbjct: 410 LMMAIARYLVIAIIAWVMWRKLVHPAWIRH-----------------QETSLRRMEMEKE 452 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + + + S ++ + +L + E A ++R+W E++ Sbjct: 453 ARQEELAARKKASEKDARDRAQQRVDTELNSQQLRELAEQEPRVIALVIRQWMNQELKS 511 >gi|298736711|ref|YP_003729241.1| flagellar M-ring protein FliF [Helicobacter pylori B8] gi|298355905|emb|CBI66777.1| flagellar M-ring protein FliF [Helicobacter pylori B8] Length = 567 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDIPENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGTPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|217031571|ref|ZP_03437076.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128] gi|216946771|gb|EEC25367.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128] Length = 567 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGTPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|15644979|ref|NP_207149.1| flagellar MS-ring protein [Helicobacter pylori 26695] gi|2313452|gb|AAD07419.1| flagellar basal-body M-ring protein (fliF) [Helicobacter pylori 26695] Length = 567 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 117/572 (20%), Positives = 233/572 (40%), Gaps = 26/572 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGASKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGVNTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPVIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + ++ ++ + A + + + EI Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISS 562 >gi|259417522|ref|ZP_05741441.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B] gi|259346428|gb|EEW58242.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B] Length = 571 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 143/570 (25%), Positives = 225/570 (39%), Gaps = 30/570 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + Q L + ++ L I F N P LY LE S + Sbjct: 13 NVQQIKNVWAGLDTRKRMMAIGATLAVIFTFFLMSMVANKPSMQLLYAGLESSSAGDVVS 72 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL ++ +D+ + G SI VPS+ + R+ LA+QGLP++ GYEL D ++ FG TS Sbjct: 73 ALEQSGVDYEVR--GGSIYVPSNKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQ 129 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 M + RA EGE+ARTI + + ARVHI F++ + + P Sbjct: 130 MFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIEPTASVSVTPMGTPITP 189 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 A AIR LVA+AV L + +V V+D+ G L+ + E + + Sbjct: 190 AQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAG----TDDRSQTLRERV 245 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + + A +G N + E DT+ IRE + DP S+V S + + S+ Sbjct: 246 LRLVEARVGHGNAVVEISVETVTDTESIREKLVDPQSRVAISTDVEERTDSSQNQ--AGE 303 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VTV N+P R+ N + E+ NYEI+ ++RL++AV++N Sbjct: 304 VTVASNIPDGDAGNGEGSRANTNATR--ERVNYEISETEKEIVRGPGAIKRLTVAVLING 361 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 G++ + + D L + +++SAA G ++ RGD IT+ SMD + V Sbjct: 362 VTTPTADGQATFEPRPDEELDALRELISAAVGFDAERGDVITLKSMDLPNVE-PEGTAVT 420 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR------LHNIDDAKKGEVGGKSI 479 S D L ++I V L++ + + G + Sbjct: 421 SSMFDNLYFDVMSIIQMAALAVVALILGLFVVRPILAGNGASVQALPSPDGMAAGGLPEL 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS------------YVSKQS 527 + + T NIALD + +S Sbjct: 481 PNMGGGDAGFMTNPDLGSNIALDGEIDSGGDGQFQPLGGLPGMGDGLATFGGGGGMSDDP 540 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557 RL MI +E +ILR W E+R Sbjct: 541 VDRLRSMIGERQEETVQILRGWLEENNEER 570 >gi|218887376|ref|YP_002436697.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758330|gb|ACL09229.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 539 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 128/557 (22%), Positives = 237/557 (42%), Gaps = 38/557 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ D + + + ++ + +A + + + +F F++N P Y LY L D + Sbjct: 4 ALADVIQKAKGFWERISISQRIFIAGLAVAVVAVFFGLVFWMNRPDYRVLYSNLSPEDAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ L + +++ GSSI+VP+ V R+ +A +G G+E+FD+V G Sbjct: 64 RVVKLLQADKVAYKLESGGSSITVPADKVYDLRLKVAGEG-NLVGQGIGFEIFDQV-KVG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180 T F+Q+I RAL+GE++RTI + +ARVH+V+P F + +P+ SV+++ Sbjct: 122 QTDFVQKINYQRALQGELSRTISEFPNVESARVHLVIPHRSLFIEEQQKPSVSVVLKLRD 181 Query: 181 --NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQ 235 K +AI +LV AV LD V++ D+TGK+L A + + + + L Sbjct: 182 SSKKLESKDVQAIVNLVVMAVEGLDKYKVSIADTTGKILYAPDEDGSITGMTTTQLDHKL 241 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q +E I + L LG + V A+L+ + IR+ +YDP+ V RS + S+++Q Sbjct: 242 RMQQTLERRIEELLYPVLGAGKIIAKVNADLDFSQRTIRKELYDPEKTVVRSEQRSEESQ 301 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 R ++ + + S + +++ +NYEIN + + Sbjct: 302 RGRSNLEAGSPDA-----NFRGDSPTGGASTQEGNRETRTTNYEINKEEQNIVAQVGDIS 356 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RL++AV+V+ G+ A + + I ++V+ A G + RGDTI ++S+ F Sbjct: 357 RLTVAVIVDGTYEKGADGQWAFVPRKAEDVERIRQLVANAVGYDRARGDTIEVSSISFGG 416 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + ++ MD L + L N V Sbjct: 417 PDVPQESSLPQLVMDY------------------------ALRLGKPLLNALLVFLFLVL 452 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS-KQSDLRLLHM 534 + I V ++ + + +++ + L M Sbjct: 453 VVRPVVLAMIRPRVEGEMIEGLEGLPEGEERLALIEGDEEVDALDALKKIEDIKAHALQM 512 Query: 535 IEINEERFAKILRKWAR 551 E N ++ I+R W + Sbjct: 513 AEQNMDQAVSIIRSWLK 529 >gi|226944512|ref|YP_002799585.1| flagellar M-ring protein [Azotobacter vinelandii DJ] gi|226719439|gb|ACO78610.1| flagellar M-ring protein [Azotobacter vinelandii DJ] Length = 576 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 126/540 (23%), Positives = 221/540 (40%), Gaps = 47/540 (8%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 P Y L+ L+ +D RI L I +R+S+ G S+ VP+ + R+ LA QGLP Sbjct: 54 REPEYRVLFANLDEADGGRIIGELDRRAIPYRLSEGGHSLLVPADQLHTLRLQLAEQGLP 113 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 N G+EL DK +FG++ F ++I R LEGE+AR+I+S+ + ARVH+ M Sbjct: 114 Q-GGNVGFELLDK-QAFGVSQFAEQINFQRGLEGELARSIESLGPVSRARVHLAMAKQSV 171 Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 F + ASV++ AI HLV+++VP L + VTV+D G+LL+ Sbjct: 172 FVREREPARASVVLNLQPGRELGESQVNAIAHLVSSSVPGLSIDAVTVVDQNGRLLSRQG 231 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 R++ G L + ++ + I LA LG N R+ VVA+++ +++ Y P+ Sbjct: 232 GARDLDGTQLDYIDEVERSYQRRIENILAPILGAQNVRAQVVAQIDFASREQTAERYAPN 291 Query: 282 SKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTD-------- 330 + + S+ + + N P + Sbjct: 292 QQPGEAAVRSQQLSENLSGGTELARGVPGALTNSPPNPPPPPAPAANETTQTGNAAGTGG 351 Query: 331 ----------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 ++ +NYE++ + ++RLS AVVVN + G+ Sbjct: 352 TGQAAAAAAEKAPTTLSRDNTTNYEVDHSVEHVQYRRGSVQRLSAAVVVNYRDAIK-DGQ 410 Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434 ++ + LA I+++V A G RGD + I + F ++ + + + Sbjct: 411 TSREPLSQEELARIDRLVRQAMGFTDSRGDQLEIMNSPFADSLVVDQQ--EWWKTPEFYN 468 Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 ++ L+ LL+ + L L+R H A + ++ + A + Sbjct: 469 LATSLSRYLLVAFIALLLWLMVLRPLKRRHREKLAAEASARAEAAEAAQLALEASRVPAL 528 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + S+ R S + +Q+ L M + + A I+R W + E Sbjct: 529 AAEE-------------SQRRDLRRKSPIYEQNLQSLREMAKEDPRLVAMIVRGWMKKEE 575 >gi|238782822|ref|ZP_04626851.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] gi|238716245|gb|EEQ08228.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970] Length = 569 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 117/584 (20%), Positives = 219/584 (37%), Gaps = 65/584 (11%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + +IL I L +A F+ SP Y L+ + D I L+ Sbjct: 15 NLMAVLERIRSSPKIILLISASAAITLIIALLFWAKSPDYRVLFSNITDQDGGAIVSQLA 74 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + N+ +R D G +I VP+ V +AR+ LA GLP + G+EL D+ FG++ F ++ Sbjct: 75 QMNVPYRFEDRGGAIMVPADKVYEARLKLAQLGLPKGGA-VGFELLDQE-KFGISQFSEQ 132 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186 + RALEGE++RTI+++ + ARVH+ MP F + +P+ASV +R + Sbjct: 133 VNFQRALEGELSRTIETLGSVNGARVHLAMPKPSMFVREQKQPSASVTVRLNNGRLLEGE 192 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 AI +L+A+AVP L VT++D G+LLT + L ++ + + I Sbjct: 193 QVSAITYLIASAVPGLSADSVTIVDQNGRLLTQRGGQTTQTS-QLKFTSEVEADFQQRIQ 251 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA---QRSETSQPE 303 L+ +G +N +S V A+L+ + + P++ +R S + ++ Sbjct: 252 SILSPIVGRNNVKSQVTAQLDFTLHEQTAEQFQPNTAPDRMSIRSSQSSDAEQGGKGGVG 311 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLEN-------------------------------TDKK 332 N P + + +++ Sbjct: 312 GVPGALSNQPSLPATAPITQAATPTAPGATGAAGAATAGATGAKGGAATVATPIPFNNRR 371 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 + +NYE++ +ERLSIAVV+N + +I+ +V Sbjct: 372 DNTTNYELDRTLTHIKRSTGSIERLSIAVVINYL----PTAEGESAPLPKEQMEQISALV 427 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A G ++ RGDT+ I + F + + + ++ A +L+ ++ Sbjct: 428 KEAVGFSAERGDTVNIVNSPFNNVEEEVAPP-----FWQQAGFINLLMAAGRYLLVAIVA 482 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 A++ + + A + + + + Sbjct: 483 WLFWRKAIKPAWLRNQELILARLELEKEARQAELDAHKRKAESGERAKAEQRVEAELNTQ 542 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 L + E A ++R+W E++ Sbjct: 543 N-----------------LRELAEQEPRVVALVIREWINKELKS 569 >gi|311105960|ref|YP_003978813.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8] gi|310760649|gb|ADP16098.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8] Length = 553 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 117/546 (21%), Positives = 203/546 (37%), Gaps = 70/546 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ +R ++ G+++ VP+ V AR+ LA+Q Sbjct: 45 MWSSEPKYKVLFSNLDDRDGGAIVAALGTMNVPYRYNETGTAVLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFTEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQAPTASVLLNMHPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 A-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A R + + V+ ++ I L +G N + A+++ ++ V Sbjct: 223 APMGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV-------------- 320 Y P+ + ++ S+ S + N + + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSSQRGVNAAQGVPGALSNQAPANPQAPIANPPQPQPPRPGQ 342 Query: 321 ------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + ++++ +NYE++ L+RLS+AVVVN R Sbjct: 343 PQQPANAQQQTSTQAATGNLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVVNYMR- 401 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 Q L ++ +V A G + RGD++ + + F + V + Sbjct: 402 ---DKDGELQPLPPEELNKLTNLVREAMGYSEPRGDSLNLVNSQFND----GPPPVPMWR 454 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + F T++ LV V L LRR + A Sbjct: 455 DPEMISLFKTILAWLVGGVLAL----WLYRLLRRTVGDYLYPPVDPEQAEAERVEAAREA 510 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + + + R M + A +LR Sbjct: 511 QDAARAKEVD------------------------RYQDNLERARTMANKDPRAVAMVLRT 546 Query: 549 WARSEI 554 W + Sbjct: 547 WMSKDE 552 >gi|90418370|ref|ZP_01226282.1| putative flagellar M-ring protein [Aurantimonas manganoxydans SI85-9A1] gi|90338042|gb|EAS51693.1| putative flagellar M-ring protein [Aurantimonas manganoxydans SI85-9A1] Length = 563 Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 203/556 (36%), Positives = 317/556 (57%), Gaps = 7/556 (1%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + Q + T+LG R+ L V L+ + L ++++ P + LY L+ +DV RI Sbjct: 8 KAQQLLTNLTALGPRRLGALGLVGLLVVALVGLGSYYLSRPDMETLYSGLDRTDVTRIGA 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL+EA I F + G +I P S AR+ LA +GLP S N+GYELFD + S GLTSF Sbjct: 68 ALTEAGIPFDVDSKGDAILTPFSQTAPARMLLAEKGLPRS-ENAGYELFDNLGSIGLTSF 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQEITRVRALEGEIARTIQ++ + AARVHIV+PD GSFR+ +P+ASV++R N + + Sbjct: 127 MQEITRVRALEGEIARTIQTLRNVRAARVHIVLPDKGSFRREQQKPSASVVVRTENGNDF 186 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQHEIEMN 244 SA+AIR LVA+A+P++ +VT+L++ G LL + + + L I + +IE + Sbjct: 187 GSAQAIRSLVASAIPSMTPEEVTILNADGTLLASGDEGVSAAPTKLFGIESVVSKDIEQS 246 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + LA +LG+ NF+++VVA L+ D +QI E ++DP+S+VERS R ++ +S E+ Sbjct: 247 IRRTLAPYLGIGNFQTSVVARLDTDRKQISERIFDPESRVERSTRTIRENNQSANRASET 306 Query: 305 AVTVEQN---MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 V VEQ+ + +S E T+++EE +NYEIN K+I+TT D Y++ERLS+AV Sbjct: 307 PVGVEQDVREVDAAPAGGGGGEQSSEETERREELTNYEINEKTISTTSDGYQVERLSVAV 366 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VV++ R+ E +G + +ID+ + EI +V++A+G ++ RGD I +T++DF+ + Sbjct: 367 VVDRKRVLEAIGENPTDAQIDARIGEIKALVASASGFSADRGDQIEVTAVDFIASDDALE 426 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 S ++ R T+INAL L +++ + GL R A +G Sbjct: 427 PIPAPSLGEMFMRQSGTLINALTILAVAIMLIWFGLKPAVRAIAAMPAAEGTTLAALDDD 486 Query: 482 PPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P L + +N+ DS + +N V RL +++ NE Sbjct: 487 EMPELDDDARALSESLLENLNYDSDPAGGSGNEIGFLDDLNFNVGNSPRARLERLLDHNE 546 Query: 540 ERFAKILRKWARSEIE 555 E A ++++W + Sbjct: 547 EHAATVMKQWLNQKEA 562 >gi|224418248|ref|ZP_03656254.1| flagellar MS-ring protein [Helicobacter canadensis MIT 98-5491] gi|253827573|ref|ZP_04870458.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491] gi|313141781|ref|ZP_07803974.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis MIT 98-5491] gi|253510979|gb|EES89638.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491] gi|313130812|gb|EFR48429.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis MIT 98-5491] Length = 576 Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 115/573 (20%), Positives = 231/573 (40%), Gaps = 29/573 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS--------PHYDNLY 52 M + Q L + + +++ + I+ + + + P Y L+ Sbjct: 1 MDLKALFEQIRNLYKRLNKKQKIVILATIVAIVAFISGLIVWNSMNNKAGVMYPGYAVLF 60 Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112 + D I L + I ++I + ++I +P +V + R+ LA+ G+P SS G+E Sbjct: 61 EGVSPEDGALIIQQLQQDKIPYQIPKD-NTILIPQELVYEQRMKLASNGIPKSS-KVGFE 118 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +FD + FG T F Q + +RA+EGE+ARTI+S+S I A VHI P+ F PT Sbjct: 119 IFDTQD-FGATDFDQRVKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177 Query: 173 ASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNIL 227 ASV++ + K I+++V++A+PNL + +V V++ G+ L+ + R + Sbjct: 178 ASVVLAFKPGQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELA 237 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVER 286 L + +E I LA G + V AE + ++ + YDP++ V Sbjct: 238 AAQLRYKNNFEQSLEEKIINILAPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVRS 297 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 L + + S+ + V N+ V + E +K + +NYE++ Sbjct: 298 EQNLEEKREGSKPKEIGGVPGVVSNIGPVQGL--EDENNRERYEKSQTTTNYEVSKTISN 355 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402 + + RLS AVVV+ ++ +Q +S + +I+ +V A G N +R Sbjct: 356 IKGEFATIRRLSAAVVVDGKYQKQIDENGIEQLQYTALNESEMQQISALVRQAIGFNEQR 415 Query: 403 GDTITITSMDFL-ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 GD +++++ ++ F + T F++ + L +++ +++ + Sbjct: 416 GDEVSVSNFQLNGQDSGFKARTPLERFLETAQNLLTPFMPLLKYVIVGIILFLFYKKVIL 475 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 K + + G N+ + + + Sbjct: 476 PFSERMLEAKADEEEEIESLLKVDDEEEENGDKLNEVRRRIEDQLGFGNGNNE-----DE 530 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++ + + A + + E+ Sbjct: 531 VKYEVLLEKIREVAQEKPTELANLFQTLVHDEL 563 >gi|33592502|ref|NP_880146.1| flagellar MS-ring protein [Bordetella pertussis Tohama I] gi|33572148|emb|CAE41692.1| flagellar M-ring protein FliF [Bordetella pertussis Tohama I] gi|332381920|gb|AEE66767.1| flagellar MS-ring protein [Bordetella pertussis CS] Length = 558 Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 116/551 (21%), Positives = 205/551 (37%), Gaps = 75/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R SDNGS++ VP+ V R+ LA+Q Sbjct: 45 MWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A R + L V+ ++ I L +G N + AE++ ++ V Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSL-------- 326 Y P+ + ++ S+ S + P + N P + + + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342 Query: 327 -----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + D+ + NYE++ L+RLS+AVVV Sbjct: 343 QQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N + L ++ +V A G + RGD++ + + F + + Sbjct: 403 NYL----PNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 +I + + L++ F +R + + Sbjct: 459 RDP--------ELIAMIKTALGWLFGLILAFWLYRKIRPVVTDYFYPQV----------- 499 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 D + Q+ ++ + + M + A Sbjct: 500 -------------DPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAVA 546 Query: 544 KILRKWARSEI 554 +LR W + Sbjct: 547 MVLRSWMSKDE 557 >gi|27381975|ref|NP_773504.1| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110] gi|27355145|dbj|BAC52129.1| flagellar M-ring protein [Bradyrhizobium japonicum USDA 110] Length = 553 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 184/539 (34%), Positives = 301/539 (55%), Gaps = 17/539 (3%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 G R++ L + ++ + ++++ P ++ LY L DV R+ AL E NI F ++ Sbjct: 30 GPRRLMALGLIGFAVLVTVVGGAYYLSRPEFETLYTGLSREDVTRMGAALREQNIAFDVN 89 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 G ++SV S +AR+ LA +GLP+S +NSGYELFDK+ S GLTSFMQE+T++RALEG Sbjct: 90 TAGDAVSVRPSQTMQARMLLAEKGLPTS-ANSGYELFDKIGSLGLTSFMQEVTKLRALEG 148 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA 197 EIART+Q + G+ AARVHIVMP GSFR P+ASV++R ++A++IRHLVAA Sbjct: 149 EIARTVQLMKGVKAARVHIVMPVRGSFRATQQPPSASVVLRTDGAIEARTAQSIRHLVAA 208 Query: 198 AVPNLDMGDVTVLDSTG-KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 A+P + VTVLD+ G LL + K S+ + + ++ NI KAL +LG+D Sbjct: 209 AIPGMSRDKVTVLDADGSMLLAEEDEATAAPTKMASLQKTVGGMVQENIRKALTPYLGLD 268 Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 NF +V +L+ D +Q E VYDP+ + ERS+R ++ + S+ + + TV+QN+P Sbjct: 269 NFEVSVAPQLSTDKRQTNETVYDPEGRAERSVRNVREKESSQNADRSTPTTVQQNLPDQQ 328 Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376 S E+ ++E+ +N+E+++K+ T D Y +++L IAV+VN+ RL LG + Sbjct: 329 VNAGGSKNSSEDKTRREDVTNFEVSSKTTTTVSDGYLVKKLFIAVLVNRARLVADLGDKS 388 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 +Q +DS LAEI+++ + A G++ +RGD I +T++DF+E + +SF++++++ Sbjct: 389 NQAIVDSKLAEISQLAATAGGLDKQRGDQIQVTAVDFIEGSRELAPVPPISFVEMINKQL 448 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 +VINA+ L ++ + GL IL+ Sbjct: 449 GSVINAVTILAVASMLVWFGLRP---------------AVNGILTHRAAQEQTEAAEAAE 493 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 A + + NL + + + RL ++ +++ + A IL+ W R E Sbjct: 494 LEAATALALAESQDPELNLVEDLEGKMQRTPQKRLEQIVRLDQAQAAAILKDWMRREEA 552 >gi|108562771|ref|YP_627087.1| flagellar MS-ring protein [Helicobacter pylori HPAG1] gi|107836544|gb|ABF84413.1| flagellar basal-body M-ring protein [Helicobacter pylori HPAG1] Length = 567 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|242238981|ref|YP_002987162.1| flagellar MS-ring protein [Dickeya dadantii Ech703] gi|242131038|gb|ACS85340.1| flagellar M-ring protein FliF [Dickeya dadantii Ech703] Length = 569 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 113/549 (20%), Positives = 216/549 (39%), Gaps = 63/549 (11%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + SP Y LY L D + L++ N+ +R +DNG +I +PS + R+ LA G Sbjct: 48 WAKSPDYRVLYSNLNDRDGGEVVTQLTQMNVPYRFADNGGAILIPSDKIYDTRLRLAQLG 107 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + G+EL D+ FG++ F ++I RALEGE++RTI+++ + +ARVH+ +P Sbjct: 108 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVHSARVHLAIPKP 165 Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV ++ AI ++V+++V L +VTV+D G+LL+ Sbjct: 166 SLFVREQKSPSASVTLNLQPGRALDEGQINAIVYMVSSSVSGLPPENVTVVDQNGRLLSQ 225 Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + + L ++ + I L +G+ N + V A+++ ++ + Y Sbjct: 226 TDAAGRDLNAAQLKYATEVEGRYQRRIEAILTPIVGMGNVHAQVTAQIDFSNREQTDEQY 285 Query: 279 DPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLE-------- 327 P+ ++ S+ + +SE N P + + Sbjct: 286 QPNQTPNQAAVRSQQSSQSEQLGGRNIGGVPGALSNQPSATPTAPVTTPGNQTNQNNASQ 345 Query: 328 ----------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + +++ NYE++ T ++RLS+AVVVN Sbjct: 346 TNAANNASAGAQAGTSASGLQSSNTRRDSTINYEVDRTIRHTKQSAGNVQRLSVAVVVNY 405 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 + + +I + G +S RGDT+ + + F E + Sbjct: 406 AL----NSEGKAAALSEEQVKQIESLTRETMGFSSDRGDTLNVVNAPFNEVTDGSGELP- 460 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 V + +L+ L+ L +R ++ + G S Sbjct: 461 ---FWQKQAFLDLVTSIGKWLLVLLVAWILWRKTVRPQMQKRAQQQALMEGLSAAK---- 513 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + + +++ R Q R+++ Q R+ + E A + Sbjct: 514 ----------QEEDIVVQLSREEQEQQRKSQQRVHAENQSQ---RIRDLAESEPRVCALV 560 Query: 546 LRKWARSEI 554 +R+W +E+ Sbjct: 561 IRQWMSTEL 569 >gi|253688952|ref|YP_003018142.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755530|gb|ACT13606.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 574 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 118/586 (20%), Positives = 231/586 (39%), Gaps = 63/586 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY + D I L Sbjct: 13 NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVGEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R +++G +I +P+ V + R+ LA GLP + G+EL D+ FG++ F + Sbjct: 73 TKLNIPYRFAESGGAIMIPAEKVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 +I RALEGE++RTI+++ + ARVH+ +P F + P++SV + Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKAPSSSVTLTLQPGRALDE 190 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 +I ++V+++V L +VTV+D TG+LLT + L ++ + Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---Q 301 I +A +G+ N + V A+++ ++ + Y P+ +++ S+ +SE Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQRGGPN 310 Query: 302 PESAVTVEQNMPHVSDRKVPLPRS---------------------------------LEN 328 N P + + + Sbjct: 311 VGGVPGALSNQPAPAPTAPIATQPNNANANANNQAGQQNQNNAAGAQANAANANTAIQTS 370 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + + +NYE++ + T H ++RLS AV+VN + + +I Sbjct: 371 NIRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIVNYQ---PPGEDGKPVALTEEQIKQI 427 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G ++ RGDT+ + + F+++ + F ++ A +L+ Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 ++ L +R ++ + LS DN + + + Sbjct: 484 LIVAWILWRKLVRPQLQRKAQQQEAALAAAALSQGA------------DNDVMVNLSSSE 531 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R Q R+N+ + R+ M E + A ++R+W +E+ Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574 >gi|120603707|ref|YP_968107.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4] gi|120563936|gb|ABM29680.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4] Length = 538 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 118/546 (21%), Positives = 226/546 (41%), Gaps = 37/546 (6%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + ++ + + + LV + +F ++N P Y LY L D NR+ L + Sbjct: 15 FWSRISMSQRVFIVGLALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKV 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 +++ ++G ++ VP+ + RI +A +G G+E+FD + G T F+Q+I Sbjct: 75 PYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTDFVQKINYQ 132 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190 RAL+GE+ RTI G+ ARVH+V+P F + +P+ASV+++ + +A Sbjct: 133 RALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQA 192 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNINK 247 I +LV AV +D V+V D++GK+L + ++ L +Q +E I + Sbjct: 193 IVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEE 252 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L +G + V A+++ + IR +YDP+ V RS + S+++ R + A Sbjct: 253 LLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRANLEAGAPD 312 Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + S + ++ +N+EIN + + L RLS+AV+V+ Sbjct: 313 A-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTY 367 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 G + + I ++VS+A G + RGDT+ + S+ F L ++ Sbjct: 368 EKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQL 427 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 F+D L + L N + + I Sbjct: 428 FLDY------------------------ALRLGKPLLNALLVFLFLLLVVRPVVMALIRP 463 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS-YVSKQSDLRLLHMIEINEERFAKIL 546 V ++ + +++ + + + E N ++ I+ Sbjct: 464 KVEGEMIEGLEGLPAGEERLALIEGDEEVDALDALRKIEDIKAHAMQLAEQNMDQAVGII 523 Query: 547 RKWARS 552 R W ++ Sbjct: 524 RSWLKN 529 >gi|254779042|ref|YP_003057147.1| flagellar MS-ring protein [Helicobacter pylori B38] gi|254000953|emb|CAX28897.1| Flagellar M-ring protein [Helicobacter pylori B38] Length = 567 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566 >gi|227329938|ref|ZP_03833962.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 574 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 119/586 (20%), Positives = 235/586 (40%), Gaps = 63/586 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY + D I L Sbjct: 13 NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++NG +I +P++ V + R+ LA GLP + G+EL D+ FG++ F + Sbjct: 73 TKLNIPYRFAENGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 +I RALEGE++RTI+++ + ARVH+ +P F + P++SV + Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKAPSSSVTLTLQPGRALDE 190 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 +I ++V+++V L +VTV+D TG+LLT + L ++ + Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +A +G+ N + V A+++ ++ + Y P+ +++ S+ +SE + Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQRGGPN 310 Query: 305 AVTVEQNMPHVSDRKVPLPRS------------------------------------LEN 328 V + + P + + Sbjct: 311 VGGVPGALTNQPAPAPTAPIATPPNNANANANNQAGQQNQNNAAGAQANAANANTVIQTS 370 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + + +NYE++ + T H + ++RLS AV+VN + + +I Sbjct: 371 NVRNDATTNYEVDKTILHTKHSSGGVKRLSAAVIVNYQ---PPGEDGKPVALTEEQIKQI 427 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G ++ RGDT+ + + F+++ + F ++ A +L+ Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 ++ L +R ++ + LS DN + + + Sbjct: 484 LIVAWILWRKLVRPQLQRKAQQQEAALAAAALSQGA------------DNDVMVNLSSSE 531 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R Q R+N+ + R+ M E + A ++R+W +E+ Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574 >gi|323698502|ref|ZP_08110414.1| flagellar M-ring protein FliF [Desulfovibrio sp. ND132] gi|323458434|gb|EGB14299.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans ND132] Length = 530 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 110/556 (19%), Positives = 232/556 (41%), Gaps = 36/556 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + ++ +++ + ++ F +++N P Y L L D +R Sbjct: 5 VAEYWSKMQGIWADRTVSQRILIGGLTAAVVISFALMIYWMNKPDYRVLMTNLYPEDASR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L D+++ +NG++I VP+ V + R+ +A +G G+E+FD+V G Sbjct: 65 VVGMLQAQKEDYKLENNGTTIMVPADRVYELRLKVAGEG-NLHGQGIGFEIFDEVQ-IGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q + RAL+GE+ARTI + ARVH+V+P F + P+AS++++ Sbjct: 123 TDFVQHVNYQRALQGELARTITEFPIVDKARVHLVIPQKSLFIEDQVAPSASIVLQLKGE 182 Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237 + I +LV+ AV L+ ++TV D G L E + + L + Sbjct: 183 GKLEPDEIKGIVNLVSMAVEGLEPKNITVTDMKGHPLYTPEDQSTGLAMSNAQLLHKADV 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +++ I + L +G D + V A+L+ + +R+ VYDP+S V RS +++ Sbjct: 243 EGKLQRRILELLGPAVGPDKVIARVNADLDFSQRTVRKEVYDPNSAVVRSETRNEETTSG 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 A V + ++ +++ ++ +N+EI+ + +L+RL Sbjct: 303 AADLGGGAPDV-----NFRGDGFSGTKTTQDSTRESRTTNFEIDKQEENIITPVGELKRL 357 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AV+V+ T+ G+ + + I ++ A G +++RGDTI ++++ F E Q Sbjct: 358 TVAVIVDGTWQTDADGKQVYVPRSAEEINRIRTLIENAVGFDAQRGDTIEVSNISFGEPQ 417 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L + ++ + ++ + N + Sbjct: 418 LADGDSLMRTMLEYAQ------------------------RLGKPFLNGLLIFLFLILVV 453 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + I V + S + + ++ S + + + + + Sbjct: 454 RPVVMALIRPRVAEQEIEEMAGLPGSERLALEEEEMDEEALDASRRLENAKNHAIQLSDE 513 Query: 538 NEERFAKILRKWARSE 553 N ++ +L+ W E Sbjct: 514 NIDQAVHLLKTWLTQE 529 >gi|293605027|ref|ZP_06687421.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553] gi|292816576|gb|EFF75663.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553] Length = 558 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 110/551 (19%), Positives = 199/551 (36%), Gaps = 75/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ +R ++ G+++ VP+ V AR+ LA+Q Sbjct: 45 MWTSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYRYNETGTALLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQAPTASVLLNVYPGRSMSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A R + + V+ ++ I L +G N + A+++ ++ + Sbjct: 223 APLGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEI 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLEN------ 328 Y P+ + ++ S+ S + N + + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSTQRGVNPAQGVPGALSNQAPPNAQAPLANPPAAQPPRPGQ 342 Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++++ +NYE++ L+RLS+AVVV Sbjct: 343 PPAAANAQQQQQQQQTGTQAATANLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N R Q L ++ +V A G + RGD++ + + F + Sbjct: 403 NYIR----DKDGEPQALPPEELNKLTNLVREAMGYSETRGDSLNLVNSQFNDGPPPLPMW 458 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + ++ + L++ F +RR + Sbjct: 459 RDPEMI--------ALFKTILAWLVGLVLAFWLYRKIRRSVTEYLYPPVDPEMAEAERQE 510 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 A + + R M + A Sbjct: 511 AAREAQDAA------------------------RTKELSRYEDNLERARTMANKDPRAVA 546 Query: 544 KILRKWARSEI 554 +LR W + Sbjct: 547 MVLRTWMSKDE 557 >gi|220932525|ref|YP_002509433.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168] gi|219993835|gb|ACL70438.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168] Length = 519 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 138/560 (24%), Positives = 235/560 (41%), Gaps = 54/560 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 D + QF + ++L + +++ S + V ++ + +SP Y L+ L D + Sbjct: 5 FQDYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPRDADA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I +R++DNG +I VPS V K R+ +A +GLPS G+E+F++ N FG Sbjct: 65 IIEKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGV-VGFEIFNQSN-FGT 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AI 180 T F +++ RAL GE++R+IQ++ I A+V I P F + ASV+++ Sbjct: 123 TDFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFVPG 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSIVQA 236 + +AI +LVA++V LD VT++D++G LL+ N + I + Sbjct: 183 HKLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQRK 242 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 +E ++ L LG DNF V A LN D +Q+ Y P D + RS + ++ Sbjct: 243 FAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEHEE 302 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + E N+P V S + + +NYEIN K + Sbjct: 303 SYEGENPVATGVPGTTSNIPQYQS--VEEENSGGTYESSDVITNYEINEKIEKHVYSPGS 360 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +ERLS+AV+VN + L +I V AA G + RGD +T+TSMDF Sbjct: 361 VERLSVAVIVNSSLERDE-------------LQKIRNAVQAAIGYDPERGDMVTVTSMDF 407 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + L + A ++ + T + + GL L + + Sbjct: 408 D---------------ETLKQQVAQAQSSALQAQKTRMYIYGGLIVLILIILSILLLSFK 452 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 +S + G + +A + ++ + Sbjct: 453 RSKESEEDMVGKAIDYMVGEEAEEEMAATELTE-------------EEKKRQKMKTEIAE 499 Query: 534 MIEINEERFAKILRKWARSE 553 ++ + A+IL+ W + Sbjct: 500 LVNEKPDEVAQILKSWLLED 519 >gi|125525107|gb|EAY73221.1| hypothetical protein OsI_01094 [Oryza sativa Indica Group] Length = 575 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 121/507 (23%), Positives = 214/507 (42%), Gaps = 26/507 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + ++L R++ L + I + + +AA P Y L+ L D I LS Sbjct: 21 LQRFSALDRSKRLRFGAGIALLVATVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 N+ ++ S+ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 81 NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERLN 138 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKSLSIVQAIQHEIEM 243 I HLVA++VP + V+VLD TGKLL+ + I + LS VQ I+ + Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSSGAIDAQQLSYVQQIEQQYTR 258 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---- 299 I L +G +N ++ V AE++ + + P+ + S S+ S Sbjct: 259 RILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQG 318 Query: 300 -SQPESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 P N P + + K+E +NYE++ T Sbjct: 319 NQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVT 378 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGDTI 406 + ++R+S AVVVN + E G++ + ++ +V G N RGD++ Sbjct: 379 RAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGDSV 438 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 I + FL + +++ + + L L++ L A++ ++ Sbjct: 439 NIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQP 498 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGL 493 G+ + ++ Sbjct: 499 PAPAAAVAAGRLGDAKNAHLMSLDVAA 525 >gi|121608098|ref|YP_995905.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2] gi|121552738|gb|ABM56887.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2] Length = 562 Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats. Identities = 125/566 (22%), Positives = 232/566 (40%), Gaps = 53/566 (9%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 +++ ++L R + + L + + + ++ +AA + P Y L+ L D I LS+ Sbjct: 26 WWQRLSALNRAQRMRLGAGVALLVLAAVAALVLGHQPDYRVLFGNLSDKDGGTIVAQLSQ 85 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ +R+++ G +I VP+ V + R+ LA+QGLP S G+EL + + FG+T F + + Sbjct: 86 MNVPYRLAEGGGAILVPADRVHEVRLRLASQGLPK-GSVVGFELM-ESSKFGVTQFQERL 143 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187 R LEGE+ R+IQ++S + +ARVH+ +P+ F + +P+ASV++ Sbjct: 144 NFRRGLEGELTRSIQALSPVQSARVHLALPEQNGFFREQQKPSASVLVSLYPGRFLERAQ 203 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMN 244 I HLVAA+VP + V+VLD TGKLL+ + + + + L VQ I+ + Sbjct: 204 LAGIVHLVAASVPEMAPSAVSVLDDTGKLLSRSPDGAADAEVNAQQLLHVQRIEQQYTRR 263 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQ 301 I L +G DN ++ V A+++ + + P+ + E S+ +++ Sbjct: 264 ILDILEPVVGRDNVKAQVTADVDFTQTESSSEQFRPNQQPESGAVRSQQLLESRSGANKL 323 Query: 302 PESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 P N P + E T+K+E +NYE++ Sbjct: 324 PTGIPGAVSNQPPVPSTAPINGPNPAPNAGGQQGPDEQTNKRESTTNYELDRTVRVVRGS 383 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 ++RLS AVVVN + + GR+ + + ++ +V + G +S RGD++ + + Sbjct: 384 TGTVKRLSAAVVVNYQSVLD-KGRAVSRALTPEQIGQMTALVRESIGFDSARGDSVNLMN 442 Query: 411 MDFLENQLFNSGTVQV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 F + +D+ V L + L + + L R + Sbjct: 443 TPFQLTVTPPEALAWWQRPALIDLAKTLAWPVGALLFAALVLLGLVWPVLRPPRAVAGRQ 502 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 D + ++ + + + Sbjct: 503 L----------------------------DALEAETPERPALPAPIIRNEPLLPTPEQLR 534 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + N A IL+ W E Sbjct: 535 LQEARALARENPAAVANILKTWLSGE 560 >gi|332284042|ref|YP_004415953.1| flagellar MS-ring protein [Pusillimonas sp. T7-7] gi|330427995|gb|AEC19329.1| flagellar MS-ring protein [Pusillimonas sp. T7-7] Length = 563 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 124/559 (22%), Positives = 214/559 (38%), Gaps = 78/559 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ LE D I AL++ NI +++S G++I VP + V + R+ LA Q Sbjct: 41 MWARTPDYGVLFSNLEDRDGGAIVAALTQQNIPYQLSSTGNAILVPRNKVHEVRLQLAQQ 100 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP +G+EL D+ FG + F ++I RALEGE+ +IQS+ + +ARVH+ +P Sbjct: 101 GLPR-GGETGFELLDQT-RFGASQFTEQINYQRALEGELVSSIQSMHAVQSARVHLAIPR 158 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LV+++VP+L V+V+D G+LLT Sbjct: 159 ESLFVRDRQPPTASVLLTLYPGRSLSDAQVAAITWLVSSSVPHLSADKVSVVDQNGRLLT 218 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 E G +++ I+ I + +G N R+ V A+++ ++ VY Sbjct: 219 NLNGEAGADGTRRNLINDIEQRTVQRILTLITPLVGPGNVRAQVSADVDFAQREQTSEVY 278 Query: 279 DPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMPHVSD------------------ 317 P+ K + S+ S PE N P ++ Sbjct: 279 RPNQKPGEAAVRSEQTSSSVQHNVLPPEGIPGALTNQPPLNAVAPIVTPPAPGAANPNDP 338 Query: 318 -------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + + NYE++ L RLS Sbjct: 339 NAAPDAAPDAAQNPNGNVLAGGENLQQGTGNSRSDATINYEVDRSITHVKDPVGSLRRLS 398 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 AVVVN + LA++N +V A G + RGDT+++ + F ++ Sbjct: 399 AAVVVNYR-----DVDGKATPLPEEELAKLNDLVKQAMGYSPARGDTLSVVNSQFSDD-- 451 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + I + ++ ++ V LLV L + L Sbjct: 452 -TPAAAPIWQNPIYLEYAMQLLQYVLAGVALLLVWRLIIKPLL----------------- 493 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 A D +++ + + + +++ M E + Sbjct: 494 ---------ADNEASKAQRQALADEEDKNREAIAAAERRASEMTRYEENMATARAMAEKD 544 Query: 539 EERFAKILRKWARSEIEDR 557 A +LR W ++ +R Sbjct: 545 PRAVAMVLRSWMENKDGNR 563 >gi|317012189|gb|ADU82797.1| flagellar MS-ring protein [Helicobacter pylori Lithuania75] Length = 567 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPVIDNATLSEKIMRKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|149194458|ref|ZP_01871555.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2] gi|149135633|gb|EDM24112.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2] Length = 559 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 134/564 (23%), Positives = 239/564 (42%), Gaps = 20/564 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-----HYDNLYVKL 55 M Q L + + I+ I+ +++ + +S +Y L+ L Sbjct: 1 MNFEAIFKQIIDFFNQLNKKQKYIIIGSIISVVLIITFLIVYNSSTTKKESNYAILFENL 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 + D I L + I ++I +NG I VP +VGK R+ +AAQGLP SS G+E+FD Sbjct: 61 KPQDAALIVQYLDKKQIPYKIPENG-IIEVPKDIVGKVRLDVAAQGLPKSS-KVGFEIFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K + FG T F Q + +RALEGE+A+TI+SI+ + A+V+I +P F + PTAS+ Sbjct: 119 KNS-FGATDFEQRVKYLRALEGELAKTIESIAAVEEAKVNIAIPKESVFVENQTPPTASI 177 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 +I+ K E I+ LVAAAVP L +V ++D G L N +L Sbjct: 178 LIKLRPNMTLTPKQIEGIKWLVAAAVPKLKPENVKIVDQYGNPLGENSEAVANSELLKAE 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L + ++ +E I+ +A +G + + V +++ + + +Y PD+ V Sbjct: 238 LLYKKRLEKALEDKISSLIAPIVGGKNKVVAKVSLDIDFSKVKSKATIYSPDNVVRSEQT 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 L + + + N+ V K + ++ +K E +NYEI+T Sbjct: 298 LEESRIGIKPKEVGGVPGAVSNIGPVQGTK--NNQIVDKYNKTETTTNYEISTTIKDIKD 355 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 D K++R++ AVVV+ + G+ + + I +V A GI+ +RGD+++++ Sbjct: 356 DYPKIKRITAAVVVDGYYKKDKDGKIKFVPLSEMQIKSIENLVKNAIGIDPKRGDSVSVS 415 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 S F + T M ++S + + +L +++ + Sbjct: 416 SFQFNQPTSNAPQTPVGKVMSMVSMYLGPFESIFKYLFLAIVLFVFYKKVINPFTQKMLE 475 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + + + Q S N + + Sbjct: 476 TPVKEEEPIKEEIHIDEEEIESTYDKIKELKEKVEQQLGISGEINEEE----LKYEVLLE 531 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 R+ M+E N E+ AK+L + E Sbjct: 532 RVTKMVEDNPEQVAKVLENLLKEE 555 >gi|308182520|ref|YP_003926647.1| flagellar MS-ring protein [Helicobacter pylori PeCan4] gi|308064705|gb|ADO06597.1| flagellar MS-ring protein [Helicobacter pylori PeCan4] Length = 567 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|91776330|ref|YP_546086.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT] gi|91710317|gb|ABE50245.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT] Length = 586 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 125/554 (22%), Positives = 218/554 (39%), Gaps = 48/554 (8%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 + + P Y L+ D I AL + N+ +RI+D GS+I VP++ V R+ Sbjct: 46 MVVFWLWSQKPEYRVLFSSYSDKDGGAIVAALEQMNVPYRIADGGSAILVPANHVHDVRL 105 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 LA+QGLP N G+EL + FG++ F++++ R LEGE+ RTIQSI + AAR+H Sbjct: 106 RLASQGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERTIQSIGAVQAARIH 163 Query: 156 IVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 + MP F + +PTASVM+ + AI HLVA++VP L +VTV+D Sbjct: 164 LAMPKPTVFTRDQQKPTASVMLNLHPGRALDQRQVSAIVHLVASSVPELPTSNVTVVDQN 223 Query: 214 GKLLTANEMER----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 G LL+ N + + L V +Q I + +A +G N + AE++ Sbjct: 224 GNLLSDNGKDAGNHYQLDPTQLKYVDELQQNIARRVESIIAPLVGAKNVHAEASAEVDFS 283 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSET--------------SQPESAVTVEQNMPHV 315 + +Y P+ + + S S+T +QP + T P Sbjct: 284 MVEQAAEIYKPNQAPDSAAIRSSQTNESQTLPGQGVGGVPGALTNQPPAPATAPIVAPGT 343 Query: 316 SDRKVPLPRSLEN---------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++ +NYE++ ++RL++A Sbjct: 344 EPTTTTNANVVTTTTTTPPGTTVTTPVMNSERNTTTNYEVDKTIRYQQQPMGGIKRLTVA 403 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VVVN + + G+ + D +I+ + A G N RGD++++ + F+ Sbjct: 404 VVVNHKQEVDAQGKVITRPLTDDEKTQISDLAKQAMGFNEERGDSLSVVNGSFMPEIAEA 463 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 V + + L + L++ L LR L ++ + G + L Sbjct: 464 FPEVPLWKDP---DNIEMAKEWLKNGLVLLVLYMLYRRFLRPLLRKLSPEEEKKGELAEL 520 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + V+ ++ +++ + + N + Sbjct: 521 DEEDQDAIVS--------LSEGEGGMTGEEAGEEEGGAPAERTYQKNLESARKLAKENPK 572 Query: 541 RFAKILRKWARSEI 554 A I+ W S Sbjct: 573 VVASIVTNWVNSNE 586 >gi|210134543|ref|YP_002300982.1| flagellar MS-ring protein [Helicobacter pylori P12] gi|210132511|gb|ACJ07502.1| flagellar basal-body M-ring protein [Helicobacter pylori P12] Length = 567 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 118/576 (20%), Positives = 234/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLNPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMVPVIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI T+ Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSTK 566 >gi|317406225|gb|EFV86471.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans C54] Length = 558 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 121/551 (21%), Positives = 208/551 (37%), Gaps = 75/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + + P Y L+ L+ D I AL N+ ++ +D G+++ VP+ V AR+ LA+Q Sbjct: 45 MWSSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYKYNDTGTALLVPADRVYDARLQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+S+ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIESMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ AI LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRERQPPTASVLLNVYPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A E + + +V+ + I L +G N + AE++ ++ V Sbjct: 223 APTGEGRGMDADQMRMVRETEQRTVERILTILNPLVGPGNVHAQASAEMDFSRREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLEN------ 328 Y P+ + ++ S+ S + N P + + Sbjct: 283 YRPNQEPGQAAIRSQQTSESNQRGINPAQGVPGALSNQPPANAQAPIANPPQTQPPRPGQ 342 Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 +D+++ +NYE++ L+RLS+AVVV Sbjct: 343 PQQQGQQQQQQTATGAGAQGAGGTVSDRRDATTNYEVDRTISHIKQPVGMLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N R Q L+++ +V A G + RGD++ + + F + Sbjct: 403 NYVR----DKDGEPQALPPEELSKLTNLVREAMGYSESRGDSLNLVNSQFND----GPPA 454 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 V + + F T++ LV V L +RR + Sbjct: 455 VPMWRDPEMISLFKTILAWLVGGVLAL----WLYRKVRRSVGDYLYPPVDPEVAEAERIE 510 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 A ++L + + + R M + A Sbjct: 511 AQREA------------------------QDLARAKETDRYQDNLERARTMANKDPRAVA 546 Query: 544 KILRKWARSEI 554 +LR W + Sbjct: 547 MVLRTWMTKDE 557 >gi|50120659|ref|YP_049826.1| flagellar MS-ring protein [Pectobacterium atrosepticum SCRI1043] gi|49611185|emb|CAG74631.1| flagellar M-ring protein [Pectobacterium atrosepticum SCRI1043] Length = 574 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 117/586 (19%), Positives = 234/586 (39%), Gaps = 63/586 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY + D I L Sbjct: 13 NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R +++G +I +P++ V + R+ LA GLP + G+EL D+ FG++ F + Sbjct: 73 TKLNIPYRFAESGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 +I RALEGE++RTI+++ + ARVH+ +P F + P++SV + Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKSPSSSVTLTLQPGRALDE 190 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 +I ++V+++V L +VTV+D TG+LLT + L ++ + Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +A +G+ N + V A+++ ++ + Y P+ +++ S+ +SE + Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQKGGPN 310 Query: 305 AVTVEQNMPHVSDRKVPLPRS------------------------------------LEN 328 V + + P + + Sbjct: 311 VGGVPGALTNQPAPAPTAPIATPPNNANANANNQAGQQNQNNAAGAQANAANTNTTIQTS 370 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + + +NYE++ + T H ++RLS A++VN + + +I Sbjct: 371 NVRNDATTNYEVDKTILHTKHSTGGVKRLSAAIIVNYQ---PPGEDGKPVALTEDQIKQI 427 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G ++ RGDT+ + + F+++ + F ++ A +L+ Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 ++ L +R ++ + LS DN + + + Sbjct: 484 LIVAWILWRKLVRPQLQKKAQQQEAALAAATLS------------QGTDNDVMVNLSSSE 531 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R Q R+N+ + R+ M E + A ++R+W +E+ Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574 >gi|33601565|ref|NP_889125.1| flagellar MS-ring protein [Bordetella bronchiseptica RB50] gi|33576001|emb|CAE33081.1| flagellar M-ring protein [Bordetella bronchiseptica RB50] Length = 558 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 116/551 (21%), Positives = 205/551 (37%), Gaps = 75/551 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R SDNGS++ VP+ V R+ LA+Q Sbjct: 45 MWSREPDYKVLFSNLDDRDGGAIVSALGQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I+++ + ARVH+ MP Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ LVA++VP L +V+++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222 Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A R + L V+ ++ I L +G N + AE++ ++ V Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------- 320 Y P+ + ++ S+ S + P + N P + + Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342 Query: 321 -----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + + D+ + NYE++ L+RLS+AVVV Sbjct: 343 QQQRAQQQAAGATTTQTQPGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N + L ++ +V A G + RGD++ + + F + + Sbjct: 403 NYL----PNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 +I + + L++ F +R + + Sbjct: 459 RDP--------ELIAMIKTALGWMFGLILAFWLYRKIRPVVTDYFYPQV----------- 499 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 D + Q+ ++ + + M + A Sbjct: 500 -------------DPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAVA 546 Query: 544 KILRKWARSEI 554 +LR W + Sbjct: 547 MVLRSWMSKDE 557 >gi|260429390|ref|ZP_05783367.1| flagellar M-ring protein FliF [Citreicella sp. SE45] gi|260420013|gb|EEX13266.1| flagellar M-ring protein FliF [Citreicella sp. SE45] Length = 541 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 130/553 (23%), Positives = 231/553 (41%), Gaps = 14/553 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + LG R +I+ + + I+ + +P LY LE + A Sbjct: 1 MQQLAQIWEGLGARRRIIVLAATVGVILAVLTMARMAGTPSMALLYAGLENGAAGEVVEA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + + G +I VP R+ LA++GLP++S N GYEL D ++ FG TS M Sbjct: 61 LEQRGVVYEVR--GGAIFVPEMERDALRMTLASEGLPANS-NKGYELLDGLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + + +ARVHI F++ + + Sbjct: 118 FDAAYWRAKEGELARTIVASPYVASARVHIANSSANPFQRDVQPSASISVTSTGEVLSPA 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A A+++LVA+AVP L V V+D G L+ A + + + + + Sbjct: 178 QARALKYLVASAVPGLVPEQVAVIDGKGGLIGAEDEVGSGPT-----AEDKADLLRDRVQ 232 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G+ N V + +++ IR+ +DP+++V S + + S+ + V Sbjct: 233 RLVDARVGLGNAVVEVSVDTVTESETIRQRQFDPENRVVISTDTEEQSSTSQDTG-SGNV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S N + E+ NYE++ T ++RL++AV+VN Sbjct: 292 TVASNLPDGQAGGGDSSSSQSNETR--ERVNYEVSETMREVTRVPGAIKRLTVAVLVNGT 349 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 T G D+ L + +V++A G +RGD ITI S+ F + +G ++ Sbjct: 350 YDTAADGTQLFVPLPDNELTALRDLVASAVGFEEQRGDEITIRSLPFERPEGLGTGPIEP 409 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + L +I V + L++ + + E G ++ S + Sbjct: 410 DWF-ALQLDPMMLIQMAVLALVALILGLFVVRPILTGSARAALPGAEGGALALPSGGTVL 468 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVSKQSDLRLLHMIEINEERFAK 544 D + + F + +S V++ RL +IE + + Sbjct: 469 DGEIDDGDEGFAPLADLGSGEGFGGGFGGMGMVDFDSPVAEDPVDRLRGLIEQRKSETVE 528 Query: 545 ILRKWARSEIEDR 557 ILR W + E + Sbjct: 529 ILRSWLDEKEEAQ 541 >gi|317008990|gb|ADU79570.1| flagellar MS-ring protein [Helicobacter pylori India7] Length = 567 Score = 339 bits (869), Expect = 7e-91, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIATGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTDNVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGASKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566 >gi|308184148|ref|YP_003928281.1| flagellar MS-ring protein [Helicobacter pylori SJM180] gi|308060068|gb|ADO01964.1| flagellar MS-ring protein [Helicobacter pylori SJM180] Length = 567 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566 >gi|110632647|ref|YP_672855.1| flagellar MS-ring protein [Mesorhizobium sp. BNC1] gi|110283631|gb|ABG61690.1| flagellar M-ring protein FliF [Chelativorans sp. BNC1] Length = 545 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 225/552 (40%), Positives = 339/552 (61%), Gaps = 13/552 (2%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +QL ++ +LG R+ ++ V+ + + + ++N P Y+ LYV LE SDVN+I Sbjct: 3 EQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQIG 62 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + L EA I F + +G+++ VP+ +AR+ LA +GLP SS+N+GYELFD V S GLT+ Sbjct: 63 LVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLP-SSANAGYELFDTVGSLGLTT 121 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 FMQE+TRVRALEGEIARTI+SI+GI AARVHIVMP+ G+FR+ G P+ASV+IR Sbjct: 122 FMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGIDG 181 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEM 243 A +IR+LVAAAVP L VTVLDS+G LL A + N + + I + ++ ++E Sbjct: 182 AAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVEE 241 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 NI +ALA +LG DNFR++V AE+N DT+Q+ E+++DPDS+VERS+++ + A + Sbjct: 242 NIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETAA 301 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 + TV QN+P LPRS E ++++EE +NYE+NTK IAT+ + Y++ RLSIAVVV Sbjct: 302 TPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVVV 361 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N+GRL +LG +A + + + EI +V++A G+N RGD + + +++F++ Sbjct: 362 NEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDGLDGVEMA 421 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 L RH T+INAL F++ +T+ GL L + G+ I Sbjct: 422 EPGPL-AALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEI---- 476 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + ++ +AL + N S N + ++ + Q+ L M+++NEER A Sbjct: 477 ----QALSQEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQAL--LARMVDLNEERTA 530 Query: 544 KILRKWARSEIE 555 ILRKWAR+E+E Sbjct: 531 DILRKWARAEVE 542 >gi|270262379|ref|ZP_06190651.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13] gi|270044255|gb|EFA17347.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13] Length = 567 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 129/580 (22%), Positives = 237/580 (40%), Gaps = 58/580 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L + L I + +A + SP Y LY L D I L Sbjct: 13 NGLQALWDRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNLNDRDGGAIVTQL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++NG+++ +P+ V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 73 TQMNIPYRFAENGAALMIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 +I RALEGE++RTI+S+ + ARVH+ +P F + P+ASV + Sbjct: 131 QINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTLTLQPGRALDD 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 AI ++V+++V L G+VTV+D G+LLT ++ + L +++ + Sbjct: 191 GQINAIVYMVSSSVAGLPPGNVTVVDQAGRLLTQSDGAGRDLNAAQLKYANEVENRYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298 I LA +G N + V A+++ T++ + Y P+ ++ S+ +SE Sbjct: 251 IEAILAPMVGNANVHAQVTAQIDFATREQTDEEYQPNQLPNQAAVRSQQMSQSEQLGGPQ 310 Query: 299 --------TSQPESAVTVEQNMP----------------HVSDRKVPLPRSLENTDKKEE 334 ++QP + T + R S +++E Sbjct: 311 VGGVPGALSNQPSAPATAPIETAKTNAAAGNNANGAKPNAAATRSTAANGSGPQNTRRDE 370 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +NYE++ T ++RLS+AVVVN V LA+I +V Sbjct: 371 TTNYEVDRTIRHTQQKAGTVQRLSVAVVVNYR---GVDKDGKPLPMSKEQLAQIESLVRE 427 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 + G +S RGDT+ + + F + ++ + +A +L+ L Sbjct: 428 SMGFSSSRGDTLNVVNTPFTDTEVTGGELP----FWQTQNFIDRLFDAGRYLLVLLAAWL 483 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 L +R A + + + + + + + R Sbjct: 484 LWRKLVRPQLQNRQAVQQAALAAANAPMAKPADN-------------NKPSNEELAQHRK 530 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 Q R+++ V Q R+ + + + A ++R+W +E+ Sbjct: 531 SQQRVSAEVQSQ---RIRDLADKDPRVVALVIRQWMSNEL 567 >gi|317153718|ref|YP_004121766.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2] gi|316943969|gb|ADU63020.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2] Length = 531 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 117/557 (21%), Positives = 227/557 (40%), Gaps = 37/557 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + + + + +++ + + ++ F +++N P Y L L D +R Sbjct: 5 IAEYWTKIHGFWSDRTAAQRILIGGLAVSVVIAFALMIYWMNKPDYKVLMTNLYPEDASR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + + DNG +I VP+ V + R+ +A +G G+E+FD V G Sbjct: 65 IVGMLQAEKEQYVLDDNGKTILVPADRVYELRLKVAGEG-NLHGQGIGFEIFDNVQ-IGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-- 180 T F+Q I RAL+GE++RTI I ARVH+V+P F + P+AS++++ Sbjct: 123 TDFVQHINFQRALQGELSRTITEFPQIEQARVHLVIPKKSLFIEDQMPPSASIILQLKDN 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237 + + +LV+ AV L+ ++TV D G+ L E + + L I Sbjct: 183 AKLAANEVQGVVNLVSMAVEGLEPKNITVTDMKGRPLYTPEDDSGGLALSNTQLEYKADI 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++ + I + L +G + + V A+L+ + IR+ YDPD V RS S++ Sbjct: 243 ENTTQRRIMELLGPVVGPEKVIARVNADLDFSQKTIRKESYDPDGSVVRSETRSEETTAG 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S + R+ +++ ++ +N+EIN + +L+RL Sbjct: 303 AASLAGGEPDA-----NFRGDGFTGTRTTQDSTRESRTTNFEINKQEENIIAPVGELKRL 357 Query: 358 SIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 S+AV+V+ TE G+S + L I +++ A G +S RGD+I ++++ F E Sbjct: 358 SVAVIVDGTWQTEEDTGKSVYVPRSAEELERIKNLIAGAVGFDSVRGDSIEVSNISFGEP 417 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 L++ ++ + ++ + N + Sbjct: 418 SLYDGDSLMRTMLEYAQ------------------------RLGKPFLNGLLIFLFLILV 453 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + I V + S + + ++ S + + + + + Sbjct: 454 VRPVIMALIRPRVAEQEIEEMAGLPGSQRLALEEEEIDEEAMDMSRRLENAKNHAVQLSD 513 Query: 537 INEERFAKILRKWARSE 553 N ++ +L+ W E Sbjct: 514 DNMDQAVHLLKSWLAQE 530 >gi|85858817|ref|YP_461019.1| flagellar M-ring protein [Syntrophus aciditrophicus SB] gi|85721908|gb|ABC76851.1| flagellar M-ring protein [Syntrophus aciditrophicus SB] Length = 509 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 132/557 (23%), Positives = 230/557 (41%), Gaps = 57/557 (10%) Query: 4 LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 ++ L+F+++ L R L V + + + A +F N P Y L+ L D Sbjct: 1 MNSFLRFYENLRQSFVELPPARKWSLLFVAGMTLSVLAAMVYFANRPEYKVLFSHLSSED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I L E I + I+ G +I VP+ V + R+ LA GLP G+E+FD+ Sbjct: 61 ASSILAKLQEKKISYEINSAGDTIFVPAEKVSELRLELAGSGLPQGGG-VGFEIFDQKT- 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T F Q++ RAL+GE+ RTI+ + I ++RVHI +P F +PTASV ++ Sbjct: 119 LGATEFEQQLNYRRALQGELGRTIKGLEEIESSRVHIALPRESLFVSEEKKPTASVTLKL 178 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234 E I HLVA++V L+ GDV ++D+ G +L+ + E + G + Sbjct: 179 KPGRSLSSSQIEGIAHLVASSVEGLNAGDVIIVDNKGNILSKLKGESGLSGLSGSQIEFQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + I L +G V A+L+ + E YDP+S V RS + + Sbjct: 239 RNLEKDTAARIQSLLENVVGQGKAVVRVAADLDFRMTEKTEESYDPESPVVRSTQKQSEK 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + +K +E NYEIN T ++ Sbjct: 299 SAT----------------------PGKADQSTGQEKLDEIINYEINKTVSKTVMPVGEI 336 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +LSIAV+V+ + + G+ Q + + I ++V + G ++ RGD +T+T+M F Sbjct: 337 RKLSIAVLVDGTYVKDKQGKEIYQPRSKKEIESIEELVRTSAGFSTARGDQVTVTNMPFK 396 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + F + +S +F L + + Sbjct: 397 KLDTEDMTGGNGWFGENISTYF----------------------PLIKYLLLLVVVVLVF 434 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 I+ VT +M + + D + S +L S +++ + M Sbjct: 435 FFVIRPLIRGITGQVTEKVMEKEALPEDIIELTGETQSLDLLSVKERELTEIEV--VKKM 492 Query: 535 IEINEERFAKILRKWAR 551 + + FA++LR W + Sbjct: 493 AVEDSKSFAELLRNWLK 509 >gi|227112541|ref|ZP_03826197.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 574 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 117/586 (19%), Positives = 232/586 (39%), Gaps = 63/586 (10%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY + D I L Sbjct: 13 NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVGEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI +R ++NG +I +P++ V + R+ LA GLP + G+EL D+ FG++ F + Sbjct: 73 TKLNIPYRFAENGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186 +I RALEGE++RTI+++ + ARVH+ +P F + P++SV + Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKAPSSSVTLTLQPGRALDE 190 Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 +I ++V+++V L +VTV+D TG+LLT + L ++ + Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I +A +G+ N + V A+++ ++ + Y P+ +++ S+ +SE + Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQRGGPN 310 Query: 305 AVTVEQNMPHVSDRKVPLPRS------------------------------------LEN 328 V + + P + + Sbjct: 311 VGGVPGALTNQPAPAPTAPIATQPNNANANANNQAGQQNQNNAAGAQANAANANTVIQTS 370 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + + +NYE++ + T H ++RLS AV+VN + + +I Sbjct: 371 NVRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIVNYQ---PPGEDGKPVALTEEQIKQI 427 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 + A G ++ RGDT+ + + F+++ + F ++ A +L+ Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 ++ L +R + + A D+ + + + Sbjct: 484 LIVAWILWRKLVRPQLQRKTQQ------------QEAALAAAALSQGADSDVMVNLSSSE 531 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R Q R+N+ + R+ M E + A ++R+W +E+ Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574 >gi|222112250|ref|YP_002554514.1| flagellar m-ring protein flif [Acidovorax ebreus TPSY] gi|221731694|gb|ACM34514.1| flagellar M-ring protein FliF [Acidovorax ebreus TPSY] Length = 564 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 130/566 (22%), Positives = 227/566 (40%), Gaps = 42/566 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + + SL R L L V + + +AA F+ P Y L+ L D I LS+ Sbjct: 19 WPQRLASLDRAARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQ 78 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ ++ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 79 MNVPYKYTEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERL 136 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187 R LEGE+ R+IQ+++ + +ARVH+ +P F + +P+ASV++ Sbjct: 137 NFQRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQ 196 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNI 245 I HLVA++VP L V+VLD TGKLL+ + + L+ VQ I+ + I Sbjct: 197 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRI 256 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----SQ 301 L +G +N ++ V AE++ + + + P+ + S S+ S Sbjct: 257 LDLLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQP 316 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATT 348 P N P + + T K+E +NYE++ + T Sbjct: 317 PTGVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTR 376 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++R++ AVVVN ++E G+ A ++ L ++ +V G N RGD++ Sbjct: 377 GGAGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVN 436 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + FL ++ G + + T+ L + ++ L + Sbjct: 437 LMNAPFLVEEVP-PGELPLWKQPETIELAKTLGWPLGISLAAAILLLGLLRPALKARARA 495 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + LS GL + + + Sbjct: 496 VQMAAQQPAGAQLSAIASEELQRPGL-----------------PAPAQPEELQPTAEQLR 538 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + N A IL+ W + Sbjct: 539 LEEARQLARDNPVAVASILKTWVNGD 564 >gi|237752970|ref|ZP_04583450.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis ATCC BAA-430] gi|229375237|gb|EEO25328.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis ATCC BAA-430] Length = 572 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 116/573 (20%), Positives = 229/573 (39%), Gaps = 29/573 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS--------PHYDNLY 52 M + Q L + + +++ + I+V + A + ++ P Y L+ Sbjct: 1 MDLKALFEQIRNLYKKLNKKQKIVILATIVVVVGFISALIVWNSTSNKTGILYPGYAVLF 60 Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112 + D I L + I ++I + ++I +P V + R+ LA+ G+P SS G+E Sbjct: 61 EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQEFVYEERMKLASNGIPKSS-KIGFE 118 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +FD + FG T F Q I +RA+EGE+ARTI+S++ I A VH+ P+ F PT Sbjct: 119 IFDTKD-FGATDFDQRIKYLRAIEGELARTIESLAPIQKATVHLAQPEKTVFISEQTPPT 177 Query: 173 ASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNIL 227 ASV++ + K I+++V++AVPNL + +V V++ G+ L+ + R + Sbjct: 178 ASVVLVFKPAQTLTPKQISGIKNIVSSAVPNLTIQNVEVVNEKGEPLSELDELGGARELA 237 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVER 286 L +H +E I L+ G + V AE + ++ + YDP++ V Sbjct: 238 VAQLRYKTDFEHALEEKIVNILSPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVRS 297 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 L + + + V N+ V + E +K + +N+EI+ Sbjct: 298 IQDLEEKREGFRPKEIGGVPGVVSNIGPVQGL--EDDNTKEKYEKTQNTTNFEISKTISN 355 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402 + + RLS AVVV+ E+ +Q + + +I+ +V A G N++R Sbjct: 356 IKGEFATIRRLSAAVVVDGRYEKELNEEGVEQLKYIALNEEDMTKISALVRQAIGYNNQR 415 Query: 403 GDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 GD +++++ F + T F++ ++ + L +++ +++ F + Sbjct: 416 GDEVSVSNFQLNGQLSGFKARTPLERFLEASAKLLEPFMPLLKYVLVGIILFFFYKKVIV 475 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 K + + N+ + + Sbjct: 476 PFSERMLEAKADEEEELESLIKIDEDEEENSDRLNEMRRRIEDQLGFGNGGNE-----DE 530 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ + A + + E+ Sbjct: 531 IKYNVLLEKIKELTMEKPAELANLFQTLVHDEL 563 >gi|308273184|emb|CBX29787.1| hypothetical protein N47_F14820 [uncultured Desulfobacterium sp.] Length = 520 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 131/558 (23%), Positives = 231/558 (41%), Gaps = 46/558 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D +QF SL + + ++ +L+ I F N Y L+ L D Sbjct: 1 MNDSAVQFLNFIKSLPLAKKITISVTVLLLIAAFAVMFMLSNQVDYRVLFNNLSAQDAGA 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E NI ++I GS I VPS V + R+ + GLP G+E+FDK + + Sbjct: 61 IIEKLKEKNIPYKIEGGGSLILVPSDQVYELRLKMVGDGLPRDG-QIGFEIFDKTD-YKT 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q + RAL+GE+ARTI + ++R+ IV+P F + +ASV++ + Sbjct: 119 TQFVQSLNYQRALQGELARTINCFDEVKSSRIFIVLPKETLFAEDTKPASASVLLDLKSN 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQ 238 + AI HLVA+AV L+ +VTV+D+ G+++ N+ + L I+ Sbjct: 179 LPPERLSAIVHLVASAVEGLEPEEVTVVDTKGRVIFKGGNGNQTNTFLNNSQLDYKSKIE 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 EI N+ L +G N V A+++ + + E YDP + V RS R +++ R+ Sbjct: 239 SEISRNVQSMLEGIIGSGNAIVRVTADIDFNKTSMNEEEYDPAAAVVRSKRDIEESFRAG 298 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + ESA ++ V + KK+ +NYEIN + + ++RLS Sbjct: 299 NASSESAPSLINQRAGVIPAESVDQNGKR---KKDTLTNYEINKVTRVISKPAGTIKRLS 355 Query: 359 IAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +A V++ T + + + D L + IV A G N R D I+++S+ F Sbjct: 356 VAAVIDGRYETVKSADGTDKRNYIPRTDEELKKFEDIVKGAMGYNEDREDKISVSSIPFS 415 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 E+ + F N+L+ + V F+ + L ++ Sbjct: 416 ESLPGDIQMASEPFD--FMALLKDYKNSLINFCLLIAVFFVLVKPLINTLKNMPKEQF-- 471 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 N + +++ +K +++ + Sbjct: 472 -----------------------------VNVKEIPAAVQSNAQLPGVKTKGQIEKVIEI 502 Query: 535 IEINEERFAKILRKWARS 552 + N E+ +++R W Sbjct: 503 SKSNPEKTEQLIRGWMNE 520 >gi|121596094|ref|YP_987990.1| flagellar M-ring protein FliF [Acidovorax sp. JS42] gi|120608174|gb|ABM43914.1| flagellar M-ring protein FliF [Acidovorax sp. JS42] Length = 564 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 130/566 (22%), Positives = 227/566 (40%), Gaps = 42/566 (7%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + + SL R L L V + + +AA F+ P Y L+ L D I LS+ Sbjct: 19 WPQRLASLDRPARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQ 78 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ ++ G +I VP+ V R+ LA QGLP S +G+EL + N FG+T F + + Sbjct: 79 MNVPYKYTEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERL 136 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187 R LEGE+ R+IQ+++ + +ARVH+ +P F + +P+ASV++ Sbjct: 137 NFQRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQ 196 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNI 245 I HLVA++VP L V+VLD TGKLL+ + + L+ VQ I+ + I Sbjct: 197 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRI 256 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----SQ 301 L +G +N ++ V AE++ + + + P+ + S S+ S Sbjct: 257 LDLLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQP 316 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATT 348 P N P + + T K+E +NYE++ + T Sbjct: 317 PTGVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTR 376 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++R++ AVVVN ++E G+ A ++ L ++ +V G N RGD++ Sbjct: 377 GGAGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVN 436 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + FL ++ G + + T+ L + ++ L + Sbjct: 437 LMNAPFLVEEVP-PGELPLWKQPETIELAKTLGWPLGISLAAAILLLGLLRPALKARARA 495 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + LS GL + + + Sbjct: 496 VQMAAQQPAGAQLSAIASEELQRPGL-----------------PAPAQPEELQPTAEQLR 538 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + N A IL+ W + Sbjct: 539 LEEARQLARDNPVAVASILKTWVNGD 564 >gi|188527156|ref|YP_001909843.1| flagellar MS-ring protein [Helicobacter pylori Shi470] gi|188143396|gb|ACD47813.1| flagellar MS-ring protein [Helicobacter pylori Shi470] gi|308061699|gb|ADO03587.1| flagellar MS-ring protein [Helicobacter pylori Cuz20] Length = 567 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|242310458|ref|ZP_04809613.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT 98-5489] gi|239522856|gb|EEQ62722.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT 98-5489] Length = 575 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 117/573 (20%), Positives = 227/573 (39%), Gaps = 30/573 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--------SPHYDNLY 52 M + Q L + + +++ + I+ + A + + P Y L+ Sbjct: 1 MDLKALFEQIRNLYKRLNKKQKIVILATIVAIVGFISALIVWNSINNKAGVLYPGYAVLF 60 Query: 53 VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112 + D I L + I ++I + ++I +P +V + R+ LA+ G+P SS G+E Sbjct: 61 EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQELVYEERMKLASNGIPKSS-KVGFE 118 Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172 +FD + FG T F Q I +RA+EGE+ARTI+S+S I A VHI P+ F PT Sbjct: 119 IFDTQD-FGATDFDQRIKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177 Query: 173 ASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNIL 227 ASV++ + K I+++V++A+PNL + +V V++ G+ L+ + R + Sbjct: 178 ASVVLAFKPAQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELA 237 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVER 286 L + +E I LA G + V AE + ++ + YDP++ V Sbjct: 238 AAQLRYKSNFEQSLEEKIINILAPITGGKEGVVAKVTAEFDFAQKESTQEYYDPNNVVRS 297 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 L + + ++ + V N+ V + E +K + +NYE++ Sbjct: 298 EQNLEESREGAKPKEIGGVPGVVSNIGPVQGL--ENEDAKEKYEKSQTTTNYEVSKTISN 355 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402 + + RLS AVVV+ ++ +Q + +I +V A G N +R Sbjct: 356 IKGEFATIRRLSAAVVVDGKYQKQLDNNGVEQLEYIALNQQEMEQITALVRQAIGYNQQR 415 Query: 403 GDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 GD +++++ F + T F++ + L ++V +++ + Sbjct: 416 GDEVSVSNFQLNGQISGFKARTPLERFLETSQELLTPFMPLLKYVVVGIILFLFYKKVIV 475 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 K + S + L+ + I + + Sbjct: 476 PFSERMLEAKAD------EEEEIESLLKIEDEEEENTDKLNEVKRRIEDQLGFSNNNEDE 529 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ + + A + + E+ Sbjct: 530 VKYSVLLEKIKELAQEKPTDLANLFQTLVHDEL 562 >gi|34558286|ref|NP_908101.1| flagellar MS-ring protein [Wolinella succinogenes DSM 1740] gi|34484005|emb|CAE11001.1| FLAGELLAR BASAL-BODY M-RING PROTEIN FLIF [Wolinella succinogenes] Length = 577 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 119/570 (20%), Positives = 223/570 (39%), Gaps = 26/570 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-----NSPHYDNLYVKL 55 M Q L + L++ I+ + + + Y L+ + Sbjct: 1 MDFKVLFNQIQNLYAKLNLKQKLVILGTIVGVVAFVSFLIVYNGGKGKSLDGYAVLFEGV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D I L ++ I +++ + ++I +P V + RI LA+ G+P SS G+E+FD Sbjct: 61 SPQDGALIIQHLEQSKIPYKLPKD-NTILIPEEKVYEERIKLASSGIPKSS-KVGFEIFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K FG T F Q++ VRA EGE++RTI+S++ I A VHI +P F PTASV Sbjct: 119 K-QEFGATDFDQKVKFVRATEGELSRTIESLTPIEKASVHIAIPKDSVFVSKETPPTASV 177 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 ++R I++LVAAA+ L+ +V +++ G+ L + + + Sbjct: 178 VLRLRPNMALTPAQVLGIKNLVAAAITRLEPENVRIVNENGEPLGEGDELTTSKEMAAVQ 237 Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + Q + +E I LA + G D + V AE + +Q + ++DP++ V Sbjct: 238 MRYKQNFERSVEEKIVNILAPIIGGADRVVAKVTAEFDFSQKQSTQELFDPNNVVRSEQT 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 L + + + + N+ V + +K + +N+EI+ + Sbjct: 298 LEEKREGFKPKEIGGVPGAVSNIGPVQGL--DSQDVRDKYEKSQTTTNFEISKTVSSIKG 355 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + ++RLS AVVV+ T V + D + +IN +V A G + RGD Sbjct: 356 EFATIKRLSAAVVVDGKYKTSVNEQGNEVLEYIPLSDEEMEKINGLVRQAMGFSGTRGDE 415 Query: 406 ITITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 T+++ +F + V F+ L + + L +++ L++ + Sbjct: 416 ATVSNFEFDAKSAGYAPKTPVERFVQGLEKFMGPFMPMLKYVIVGLILFVFYKKIIVPFA 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + N + + S + I Sbjct: 476 ERML--EVHEDEDEEIESLIKLDDDDEDALNKFNEMKRRVEEQLGLGSGLSEDEI---KY 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ ++ E A I + R E+ Sbjct: 531 DVLLEKMKNIAMEKPEEVAGIFQTLIRDEL 560 >gi|264676594|ref|YP_003276500.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2] gi|299531261|ref|ZP_07044671.1| flagellar M-ring protein FliF [Comamonas testosteroni S44] gi|262207106|gb|ACY31204.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2] gi|298720668|gb|EFI61615.1| flagellar M-ring protein FliF [Comamonas testosteroni S44] Length = 568 Score = 337 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 115/574 (20%), Positives = 229/574 (39%), Gaps = 60/574 (10%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + +L R + L ++ + + +AA F P Y L+ + D I L++ Sbjct: 24 LAQRWNALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKLLFSNVSDKDGGAIVAQLTQ 83 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ S+ G +I +P+ V R+ LA QGLP S +G+EL + + FG+T F + + Sbjct: 84 MNVPYKYSEGGGAILIPADRVHDVRLKLATQGLPK-GSVTGFELM-ENSKFGITQFQERL 141 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187 R LEGE+ R+I +++ + +ARVH+ +P+ F + +P+ASV++ Sbjct: 142 NFQRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQ 201 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 I HLVA++VP ++ V+V+D TGKLL+ + + + Q ++ + I Sbjct: 202 IAGIVHLVASSVPEMEPAAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRI 261 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSETSQ 301 L +G +N ++ V AEL+ + + P+ RS ++ + + Sbjct: 262 LDILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSADGGAVRSQQVMETNGEKTATP 321 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSL-----------ENTDKKEEQSNYEINTKSIATTHD 350 P N P + + +K+E +NYE++ T Sbjct: 322 PTGVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNGQGNKRESITNYEVDKTVRVTRGS 381 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQ-----------GKIDSYLAEINKIVSAATGIN 399 ++RL+ AVVVN +A ++ +V G + Sbjct: 382 TGTVKRLTAAVVVNAPLAAAAGTDAATAATAAAVSSGLRPLTAQQQEQLLTLVRETVGYS 441 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + RGD++ + S F+++ + +I + + + + L G L++ L Sbjct: 442 ADRGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPL 501 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 L+ + + + +++ P + A + Sbjct: 502 LKGRNTGPGGQLNAIEAEALDRPALPAPAKE----------------------------L 533 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ + H+ + N A I++ W E Sbjct: 534 SPTKEQERLDQARHLAKQNPIAVANIVKTWINGE 567 >gi|325295413|ref|YP_004281927.1| flagellar M-ring protein FliF [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065861|gb|ADY73868.1| flagellar M-ring protein FliF [Desulfurobacterium thermolithotrophum DSM 11699] Length = 529 Score = 337 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 131/563 (23%), Positives = 223/563 (39%), Gaps = 48/563 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARF-FVNSPHYDNLYVKLEVSD 59 M I + + + + +IL L + + Y LY L D Sbjct: 1 MNIKEIQTKVQEIFKKNANPKNVILLLSALTLVSFLAFIAIKQSTTEDYAVLYTHLSPDD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L E +I +++ NGS I VP V R+ LAA+GLP G+ELFD+ Sbjct: 61 AGSILSVLQEEHIPYKVEGNGSIILVPKEKVYDIRLKLAAKGLPH-GKVVGFELFDE-PK 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR- 178 G+T F + + +RALEGEI RTI+ I+ I +V+I +P F + P AS+++ Sbjct: 119 LGITQFQENVEFLRALEGEIERTIKRINAIQDVKVNIALPKDSIFVRESEEPKASILVNL 178 Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIV 234 + +AI LV+ AVP L +VTV+D+ G++LT + K L + Sbjct: 179 WPGRELTKEQVKAIVFLVSHAVPGLKPENVTVIDNRGRVLTDLLSGNEDETGSSKELEVK 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ EIE I L+ LG E+ + +E +YDPD S R ++ Sbjct: 239 RKLEKEIERKIQSMLSQVLGSGKVVVRASVEIETGRLEKKEELYDPDMTAVVSERKIQEK 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + + N+P V + + +KK+ +NY+++ T +K+ Sbjct: 299 ETGIKPKEQGVPGTTTNVPPV--LNLNQGNEILKKEKKDVTTNYDVSKTIQKTITPIFKI 356 Query: 355 ERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +R+S+ V+V+ E + + +IV +A G + +RGDT+T+ S Sbjct: 357 KRISVGVLVDGKYQKEKDKAGNEIIKFVPRSQEEIKTYEEIVKSAIGYDPKRGDTVTVAS 416 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F Q Q F I I A L+ +LV + L L+ Sbjct: 417 VPFEAKQFVQKEKSQKKFPWI-------YIAAGGGLLTLILVGIIALKLLKSKKTEPQQP 469 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + L S ++ Sbjct: 470 EIPETLMAEMKARAEHKEELEELHIE---------------------------SDPLYIK 502 Query: 531 LLHMIEINEERFAKILRKWARSE 553 ++ + + + E A ++ KW R E Sbjct: 503 IVEIAKEHPELVANVISKWIREE 525 >gi|85058031|ref|YP_453733.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str. 'morsitans'] gi|84778551|dbj|BAE73328.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str. 'morsitans'] Length = 568 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 125/549 (22%), Positives = 212/549 (38%), Gaps = 57/549 (10%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +P Y LY + D + L+ NI +R + N +I VPS V + R+ L Sbjct: 44 VLLLWARTPDYRILYSNISDQDGGAVVAELTTMNIPYRFAGNSDAIMVPSDRVHETRLLL 103 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A +GLP + G+EL D+ FG++ F ++I RALEGEIARTI++++ + +ARVHI Sbjct: 104 AQKGLPKGGA-LGFELLDRE-KFGMSQFSEQINYQRALEGEIARTIKTLNPVKSARVHIA 161 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 MP F + TASV + +AI LV+ VP+L G++T++DS G+ Sbjct: 162 MPKPSLFVREHKPATASVTLTLYPGRALDTGQIQAITWLVSGTVPDLPAGNITMVDSQGQ 221 Query: 216 LLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LL E ++ L+ + ++ + + I+ LA +G N R+ V A+L+ + Sbjct: 222 LLAQPGNNELDLSTTQLAYTREVEGDFQRRISAILAPVIGAANVRAEVTAQLDFTAVEQT 281 Query: 275 EIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMPHVSDRKVPLPRSL----- 326 + P+ + E S+ S+ P N P + Sbjct: 282 AEQHKPNGRPEEMAIRSQQLSASDQIGIQAPGGVPGALSNQPTPPATASIESPANAAAGK 341 Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + + E+ NYE++ + ++RLS AVVVN Sbjct: 342 KPASKDSVPPPAAAAPIVQPPRSSQNEKTINYEVDRTLTHSRFRPGVIKRLSGAVVVNDR 401 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + ++ +V A G +S RGDT+ I + F+ NQ Sbjct: 402 ----EDSNGNRVHLTPQEMQDVTALVREAMGFSSERGDTLNIVNTRFVANQDIMPPLP-- 455 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + + L + + LL LR L + E + P Sbjct: 456 --FWQDPGLQSIAFSLLRYALVALLFWLAWRKGLRPLWQRQQEIERERIRAQYEASQPRD 513 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + + + Q + + S +L + + A+IL Sbjct: 514 EPRPISRSELEKETREKARQAM----------------EDSIRQLRDVAAARPQMVARIL 557 Query: 547 RKWARSEIE 555 R+W E + Sbjct: 558 RQWITREQQ 566 >gi|307944136|ref|ZP_07659477.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4] gi|307772482|gb|EFO31702.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4] Length = 537 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 136/549 (24%), Positives = 239/549 (43%), Gaps = 17/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + +LG TR+ + +V + + +F V +P LY L + D I Sbjct: 1 MNGLIEFIKTLGPTRVAAMGAVAAMLVGIFAFIILRVTAPQMTTLYSDLTLEDSGAIVSR 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + NG+++ VP V + R+ LA GLP+ S GYE+FD+ ++ G TSF+ Sbjct: 61 LEGMGVPYELGRNGATVMVPRERVARLRMQLAEDGLPTGGS-IGYEIFDRSDTLGATSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q I +RALEGE+AR+I +I I +ARVH+V+P+ F++ PT S+++ Sbjct: 120 QNINHLRALEGELARSIAAIDRIQSARVHLVIPERQLFQRDQRAPTGSIVLNVRGTLGQG 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243 A++HLVA AV L V+V+D TG+LL ++ E I V AI+ ++ Sbjct: 180 EIRAVQHLVATAVEGLRPESVSVVDETGRLLASGAESDEEGIIGNSLQERVFAIESRLKG 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + + L++ +G R V A+++ + +DP+ +V RS + ++A S E Sbjct: 240 QVEEILSSVVGPGRSRVRVAADVDFNRTTETIETFDPEGQVVRSTQTKEEASSSTERTNE 299 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V N S E T EE NYEI+ + + +++RLS+AV+V Sbjct: 300 VTVG---NELPNGGDNNGGEGSNEETTATEEIVNYEISRSTKTEIVEAGRVQRLSVAVLV 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G + L I +V +A G + RGD + + ++ F + Sbjct: 357 DGTYGPNADGEVVYTPRTQETLDRIALLVRSAVGFDEGRGDIVEVVNLQFAAPPQGDLTE 416 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 F ++ L+ LL+ F+ LRR+ ++ + E+ Sbjct: 417 EPGLFEFTKEDIMRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEPQPQELLIGPDGQLI 476 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 S + +D + ++ + + + S ++ MIE + Sbjct: 477 AESEVPSEDAEEDDEMRIEWLEEAKAAGAAQA----------TSISKVGEMIEEHPTEAV 526 Query: 544 KILRKWARS 552 I+R W Sbjct: 527 TIVRGWLDE 535 >gi|221069298|ref|ZP_03545403.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1] gi|220714321|gb|EED69689.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1] Length = 568 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 115/574 (20%), Positives = 231/574 (40%), Gaps = 60/574 (10%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + ++L R + L ++ + + +AA F P Y L+ + D I L++ Sbjct: 24 LAQRWSALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKMLFSNVSDKDGGAIVAQLTQ 83 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 N+ ++ S+ G +I +P+ V R+ LA QGLP S +G+EL + + FG+T F + + Sbjct: 84 MNVPYKYSEGGGAILIPADRVHDVRLKLATQGLPK-GSVTGFELM-ENSKFGITQFQERL 141 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187 R LEGE+ R+I +++ + +ARVH+ +P+ F + +P+ASV++ Sbjct: 142 NFQRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQ 201 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245 I HLVA++VP ++ V+V+D TGKLL+ + + + Q ++ + I Sbjct: 202 IAGIVHLVASSVPEMEPSAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRI 261 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSETSQ 301 L +G +N ++ V AEL+ + + P+ RS ++ + + Sbjct: 262 LDILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSTDGGAVRSQQVMETNGDKTATP 321 Query: 302 PESAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 P N P + + + +K+E +NYE++ T Sbjct: 322 PTGVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNAQGNKRESITNYEVDKTVKVTRGS 381 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQ-----------GKIDSYLAEINKIVSAATGIN 399 ++RL+ AVVVN +A ++ +V G + Sbjct: 382 TGTVKRLTAAVVVNAPLAAAAGTDAATAAAAAAVSSGLRPLTAQQQEQLLTLVRETVGYS 441 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + RGD++ + S F+++ + +I + + + + L G L++ L Sbjct: 442 ADRGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPL 501 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 L+ + + + +++ P + A + Sbjct: 502 LKGRNTSPGGQLNAIEAEALDRPALPAPA----------------------------KDL 533 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ + H+ + N A I++ W E Sbjct: 534 SPTKEQERLDQARHLAKQNPIAVANIVKTWINGE 567 >gi|297379568|gb|ADI34455.1| flagellar M-ring protein FliF [Helicobacter pylori v225d] Length = 567 Score = 336 bits (860), Expect = 7e-90, Method: Composition-based stats. Identities = 116/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI++++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMVPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|325995631|gb|ADZ51036.1| Flagellar M-ring protein [Helicobacter pylori 2018] gi|325997227|gb|ADZ49435.1| Flagellar MS-ring protein [Helicobacter pylori 2017] Length = 567 Score = 336 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 116/576 (20%), Positives = 231/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++ + +I VP V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566 >gi|317181691|dbj|BAJ59475.1| flagellar MS-ring protein [Helicobacter pylori F57] Length = 567 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGTPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILAFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|296135691|ref|YP_003642933.1| flagellar M-ring protein FliF [Thiomonas intermedia K12] gi|295795813|gb|ADG30603.1| flagellar M-ring protein FliF [Thiomonas intermedia K12] Length = 568 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 116/572 (20%), Positives = 218/572 (38%), Gaps = 40/572 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + + + L + + I L + + + Y LY L D + Sbjct: 9 LQDPLGAFRQMNMNQRLTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + NI +RI+ G+ I VPS+ V R+ LAA GLP + G+E+ D G + F+ Sbjct: 69 LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHEP-MGTSQFV 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + + RALEG + RTI+S+S + +A VH+ +P F +P+ASV+++ V Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186 Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEM 243 I HLV++AV L +V+V+D G LL + + I L I+ + Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I LA +G + R AV A+++ + +VY S + + P Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYG--QGHLLSQQQQSTNSSGGGTLPA 304 Query: 304 SAVTVEQNMPHV--------------------SDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + L SNY+++ Sbjct: 305 GVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKT 364 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T ++RLS++V+VN + L ++ ++V A G +++RG Sbjct: 365 VSHTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLSAAQLGQMKQLVENAIGFDAKRG 419 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--- 460 DT++I +M F Q + + + + ++ L+ L+ A Sbjct: 420 DTVSIVNMPFTAAQKEAEKQLPLWRQAWVWDGVRQAVPYVIALILGLMAYRAMRKATSGD 479 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + + E+ + P ++G +A + + L + + Sbjct: 480 VKAKRRKGKEAAELDETAREETPSDGMQKSSGPGAGAEMAASGVPGALAPDTVQLSNTLE 539 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + +++ + R A+++++W Sbjct: 540 TDAAIS-----RELVKQDPRRAAQVVKEWLSD 566 >gi|157371187|ref|YP_001479176.1| flagellar MS-ring protein [Serratia proteamaculans 568] gi|157322951|gb|ABV42048.1| flagellar M-ring protein FliF [Serratia proteamaculans 568] Length = 563 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 127/576 (22%), Positives = 235/576 (40%), Gaps = 54/576 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L + L I + +A + SP Y LY + D I L Sbjct: 13 NGLQAMWNRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNINDRDGGAIVTQL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++ NI FR ++NG+++ +P+ V + R+ LA GLP + G+EL D+ FG++ F + Sbjct: 73 TQMNIPFRFAENGAALLIPADKVHETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 +I RALEGE++RTI+S+ + ARVH+ +P F + P+ASV + Sbjct: 131 QINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTLTLQPGRALDD 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 AI ++V+++V L G+VTV+D +G+LLT ++ + L ++ + Sbjct: 191 GQINAIVYMVSSSVAGLPPGNVTVVDQSGRLLTQSDGAGRDLNAAQLKYANEVESRYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----- 299 I LA +G N R+ V A+++ T++ + Y P+ ++ SK +S+ Sbjct: 251 IEAILAPMVGNGNARAQVTAQIDFATREQTDEEYQPNQLPNKAAVRSKQMSQSDQIGGPL 310 Query: 300 ---------------------SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 + +A N + S + +E +NY Sbjct: 311 VGGVPGALSNQPSAPATAPIETAKPAATGNNANATQPNAAATRSAASGPQNSRLDETTNY 370 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 E++ T ++RLS+AVVVN LA+I +V + G Sbjct: 371 EVDRTIRHTQQKAGTVQRLSVAVVVNYR---GTDKDGKPLPMSKEQLAQIESLVRESMGF 427 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 +S RGDT+ + + F +N++ + +A +L+ L+ L Sbjct: 428 SSTRGDTLNVVNTPFTDNEVTGGELP----FWQSQAFIDRLFDAGRYLLVLLVGWLLWRK 483 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +R A + + + + + + + + R Q R Sbjct: 484 LVRPQLQNRQAVQKAAIAAANTPMAKPAES-------------NKQSNEELAQHRKSQQR 530 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 +++ V Q R+ + + + A ++R+W +E+ Sbjct: 531 VSAEVQSQ---RIRDLADKDPRVVALVIRQWMSNEL 563 >gi|251772444|gb|EES53011.1| flagellar M-ring protein FliF [Leptospirillum ferrodiazotrophum] Length = 530 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 113/566 (19%), Positives = 197/566 (34%), Gaps = 51/566 (9%) Query: 1 MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M +L + + L + ++ + + L + S LY L +D Sbjct: 1 MDVLRKAMETISMWFGRLTMLQKVVAGILGAFLVGLLVFLGVVGKSADKSVLYSHLSPTD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 IS L I + G+ I VP V R+ LA GLP +G+ +F S Sbjct: 61 SFEISQKLDRMGISYDTDAKGTEIRVPKKQVYMLRMQLADDGLPRH-HGAGFAIF-NHPS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 T F+Q + ++AL+ E+ RTI+ +S I ARV IV+P F + ASV++R Sbjct: 119 LTTTDFVQHVQYLQALQSELDRTIEEMSPIALARVSIVLPRRSVFLRHQKGAHASVLVRL 178 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234 + + HLVA +V L VTV+D+TG +L + L+ Sbjct: 179 KPGRSLSRAQVKGVVHLVANSVEGLTPDHVTVVDNTGTILNEKHPGLIPGELTKAQLAYQ 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 ++H + + L LG V A L+ + +YDP + ++ Sbjct: 239 AMVEHRLRNRVQSMLDQVLGEGQAVVRVNATLDFRRVEETRELYDPKGRALSEREKLREK 298 Query: 295 QRSETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 P V N+P + P + KK++ +Y+++ Sbjct: 299 SSGTRIVPVGVPGVLSNVPGSNGKVASPPLGPKDGTQTKYSKKKDIEHYDVSHTMSHIVL 358 Query: 350 DNYKLERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + R+S++V+VN + + + + LA +IV A G ++ RGDT+ Sbjct: 359 PTGTVSRISVSVLVNGKTRTVTGKTGETQIYEPRTPEELASFTRIVQNAIGFDATRGDTV 418 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + S+ F ++ + L +G LLV L L+ + Sbjct: 419 VVDSVPFAAAAPEGKTQEV-----RMAERLKPFMPLLEIFLGGLLVLVFSLFILKPILQS 473 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K + P Sbjct: 474 MMTKSLPMPVSGPAGLPIPDREE------------------------------ERETVSS 503 Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552 S + M + + + A++LR W + Sbjct: 504 SKEDIARMTQEDPSQAAQVLRLWLKE 529 >gi|217033359|ref|ZP_03438790.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10] gi|216944300|gb|EEC23725.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10] gi|317177162|dbj|BAJ54951.1| flagellar MS-ring protein [Helicobacter pylori F16] gi|317179256|dbj|BAJ57044.1| flagellar MS-ring protein [Helicobacter pylori F30] gi|332673195|gb|AEE70012.1| flagellar M-ring protein FliF [Helicobacter pylori 83] Length = 567 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|15611393|ref|NP_223044.1| flagellar MS-ring protein [Helicobacter pylori J99] gi|4154846|gb|AAD05899.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99] Length = 567 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 118/576 (20%), Positives = 235/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++ + +I VP V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR-LTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ + G +A + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALEDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566 >gi|124516311|gb|EAY57819.1| Flagellar M-ring protein FliF [Leptospirillum rubarum] Length = 531 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 127/564 (22%), Positives = 217/564 (38%), Gaps = 49/564 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + R + + V + + + S L+ L D Sbjct: 3 ALRQIFQNLLDRFMQMPVARRMTVLVVFVGMMAGGVFFSMMEKSGGDGVLFSNLSPGDSM 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+ + + +S GS I VPS V R+ LA +GLP +G++LF S Sbjct: 63 AIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLF-NHPSLA 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F+Q + + AL+ E+ RTI+ ++ I ARV IV+P F + + ASV++R Sbjct: 121 TTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRLKP 180 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQA 236 + I HLVA AVP L VTV+D+ G++L + LS + Sbjct: 181 GMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQRE 240 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ ++ + L LG D V AELN + +DP+ +V + ++ Sbjct: 241 VEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREKST 300 Query: 297 SETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 P V NMP + P + KK++ ++Y ++ T Sbjct: 301 GSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSRTDQHVTEPV 360 Query: 352 YKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L R+S++V+VN +T + ++ Q + + + +IV A G +S RGD + + Sbjct: 361 GNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIQDFTRIVQNAIGFDSARGDQVVV 420 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S+ F + + SF + L+ + L +G LL+ L LR L Sbjct: 421 LSVPFSGTAAPSPKNIDQSFQEKLA----PFVPLLEIFLGGLLLVIFSLLVLRPLLKAMV 476 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 K EV PP+ A + + S Sbjct: 477 QWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRSSR 506 Query: 529 LRLLHMIEINEERFAKILRKWARS 552 + M + + + A ++R W + Sbjct: 507 DEVARMTQEDPGQAATVVRSWLKE 530 >gi|315586339|gb|ADU40720.1| flagellar M-ring protein FliF [Helicobacter pylori 35A] Length = 567 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 118/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + N+ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLNNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|317010623|gb|ADU84370.1| flagellar MS-ring protein [Helicobacter pylori SouthAfrica7] Length = 567 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 117/572 (20%), Positives = 233/572 (40%), Gaps = 26/572 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALIVFLLIYPFKEKNYVQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++S + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDPSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGTPKKQIGGVPGVVSNIGPVQGLKDNKEQ--EKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMRKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + ++ ++ + A + + + EI Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISS 562 >gi|261837785|gb|ACX97551.1| flagellar basal-body M-ring protein [Helicobacter pylori 51] Length = 567 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 118/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITTLLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI T+ Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSTK 566 >gi|254563420|ref|YP_003070515.1| basal-body MS biosynthesis protein [Methylobacterium extorquens DM4] gi|254270698|emb|CAX26702.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens DM4] Length = 540 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 143/552 (25%), Positives = 252/552 (45%), Gaps = 19/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + T LG RI +A+V L + F V+ P L+ L + D + + Sbjct: 1 MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60 Query: 67 LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF Sbjct: 61 LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + +RA+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 AIRHL A+AV L V+++D G+LL E + G I+ + Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + +A +G R V AEL+++ + R +DP+S+V RS + ++ S T E Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P + + P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 357 DGVYAPGADGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTTAEFS 416 Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SF+ ++ V + TL+V + L R DA G L Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + + + + ++IN + ++ R++ M+ + Sbjct: 477 ALAGAGGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527 Query: 541 RFAKILRKWARS 552 ++LR W Sbjct: 528 ETVEVLRNWIHD 539 >gi|218532348|ref|YP_002423164.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4] gi|218524651|gb|ACK85236.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum CM4] Length = 540 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 143/552 (25%), Positives = 253/552 (45%), Gaps = 19/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + T LG RI +A+V L + F V+ P L+ L + D + + Sbjct: 1 MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60 Query: 67 LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF Sbjct: 61 LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + +RA+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 AIRHL A+AV L V+++D G+LL E + G I+ + Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + +A +G R V AEL+++ + R +DP+S+V RS + ++ S T E Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P + + P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 357 DGVYAPGADGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFS 416 Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SF+ ++ V + TL+V + L R DA G L Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + + + + + ++IN + ++ R++ M+ + Sbjct: 477 ALAGAAGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527 Query: 541 RFAKILRKWARS 552 ++LR W Sbjct: 528 ETVEVLRNWIHD 539 >gi|294339862|emb|CAZ88225.1| putative Flagellar M-ring protein FliF [Thiomonas sp. 3As] Length = 568 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 117/571 (20%), Positives = 219/571 (38%), Gaps = 38/571 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + + + + + I L + + + Y LY L D + Sbjct: 9 LQDPLGAFRQMNMNQRFTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + NI +RI+ G+ I VPS+ V R+ LAA GLP + G+E+ D G + F+ Sbjct: 69 LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHEP-MGTSQFV 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + + RALEG + RTI+S+S + +A VH+ +P F +P+ASV+++ V Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186 Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEM 243 I HLV++AV L +V+V+D G LLT+ + + I L I+ + Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I LA +G + R AV A+++ + +VY S + + P Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYG--QGHLLSQQQQSTNSSGGGTLPA 304 Query: 304 SAVTVEQNMPHV--------------------SDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + L SNY+++ Sbjct: 305 GVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKT 364 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 T ++RLS++V+VN + L ++ ++V A G +++RG Sbjct: 365 VSHTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLNPAQLGQMKQLVENAIGFDAKRG 419 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 DT++I +M F Q + + + V L++ + A+R+ Sbjct: 420 DTVSIVNMPFTAAQKEAEKQLPLWR----QAWVWDGVRQAAPYVIALILGLMAYRAMRKA 475 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL-QSRINSY 522 + D K G ++ + + + +L + Sbjct: 476 ASGDVKAKRRKGKEAAEDDETAREETPSDGTQKSSGPGAGAEMAAGGMPGSLAPDTVQLS 535 Query: 523 VSKQSDLRL-LHMIEINEERFAKILRKWARS 552 + ++D + +++ + R A+++++W Sbjct: 536 NTLETDAAISRELVKQDPRRAAQVVKEWLSD 566 >gi|206603154|gb|EDZ39634.1| Flagellar M-ring protein FliF [Leptospirillum sp. Group II '5-way CG'] Length = 531 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 126/564 (22%), Positives = 217/564 (38%), Gaps = 49/564 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + R + + V + + + + L+ L D Sbjct: 3 ALRQIFQNLLDRFMQMPVARRMTVLVVFVGMVAGGVFFSMMEKTGGDGVLFSNLSPGDSM 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+ + + +S GS I VPS V R+ LA +GLP +G++LF S Sbjct: 63 AIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLF-NHPSLA 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F+Q + + AL+ E+ RTI+ ++ I ARV IV+P F + + ASV++R Sbjct: 121 TTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRLKP 180 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQA 236 + I HLVA AVP L VTV+D+ G++L + LS + Sbjct: 181 GMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQRE 240 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ ++ + L LG D V AELN + +DP+ +V + ++ Sbjct: 241 VEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREKST 300 Query: 297 SETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 P V NMP + P + KK++ ++Y ++ T Sbjct: 301 GSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSHTDQHVTEPV 360 Query: 352 YKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 L R+S++V+VN +T + ++ Q + + + +IV A G +S RGD + + Sbjct: 361 GNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIRDFTRIVQNAIGFDSARGDQVVV 420 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S+ F + + SF + L+ + L +G LL+ L LR L Sbjct: 421 LSVPFSGTSAPSPKNIDQSFQEKLA----PFVPLLEIFLGGLLLVIFSLLVLRPLLKAMV 476 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 K EV PP+ A + + S Sbjct: 477 QWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRSSR 506 Query: 529 LRLLHMIEINEERFAKILRKWARS 552 + M + + + A ++R W + Sbjct: 507 DEVARMTQEDPGQAAIVVRSWLKE 530 >gi|261839198|gb|ACX98963.1| flagellar M-ring protein FliF [Helicobacter pylori 52] Length = 567 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVMPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|78045011|ref|YP_359840.1| flagellar MS-ring protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997126|gb|ABB16025.1| flagellar M-ring protein FliF [Carboxydothermus hydrogenoformans Z-2901] Length = 528 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 112/559 (20%), Positives = 214/559 (38%), Gaps = 37/559 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M L + +L + +IL ++ + F+ P Y L L+ + Sbjct: 1 MDFQSLLASIKERFQNLSSFQKRAYGILILTAVLSLLLGYIFLGRPSYTPLATGLDAKEA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I+ L E I++++ D G++I VP S V +ARI LA+ G+ ++S G+ELFD+ Sbjct: 61 GAIAEKLKEWKINYKLGDEGTTILVPKSQVYEARIKLASAGVLETNSGIGFELFDQT-KL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIR 178 G + F ++ RAL+ E+ RTI + + ARVH+V+P+ F TAS+ ++ Sbjct: 120 GASDFENQVNYQRALQEELRRTIVQLDAVEDARVHLVLPEKSVFISEEKPATASILLKLK 179 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIV 234 + + + I +LVA +V L +V V+D+ G +L+ + G+ + Sbjct: 180 PLKKLTPQEIKGIIYLVANSVEGLKPENVQVVDTYGNVLSDQVDLSSSLSAQSGRQQEMK 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + + E+ IN L LG ++ A+L+ + ++ + P S + SK+ Sbjct: 240 KQFETELTNRINNLLTTILGPGKAVVSINADLDFNQEETTSQIALP--GPLVSEQGSKEV 297 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + V N + + + + E K++ NY++ + Sbjct: 298 VYG-SPGASGTVGTGPNT-NQNYPYINGSTNGEVQVKEDFTRNYQVGQTVYKLVKAPGTV 355 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS A+ ++ G + + +I IV+AA G + RGD I I ++ F Sbjct: 356 KRLSAAIAIDSGV-------------PAADVNKIRDIVAAAMGYDQNRGDQIIINTITFD 402 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + Q A + + ++ + +RR A Sbjct: 403 KTLAKQMEEQQAQAQKEQQARQALYKWLAIGAGALVFLSIIVFFGIRRFRKKPAAVADIS 462 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + A + I + ++ + Sbjct: 463 PRAPV-------------GVSELEAAAAAERGPGIIVREMTAEPIVIQKVQSDIEKIKSL 509 Query: 535 IEINEERFAKILRKWARSE 553 ++ N + A +LR W E Sbjct: 510 VDKNPDEVAMVLRAWLTDE 528 >gi|149203111|ref|ZP_01880082.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035] gi|149143657|gb|EDM31693.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035] Length = 535 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 131/549 (23%), Positives = 237/549 (43%), Gaps = 16/549 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + +L +I+ V +A ++P LY LE S + A Sbjct: 1 MQQITRLWQALTLRNRIIVIGAAFVMFWAVLALARMASTPSMTLLYAGLESSAAGEVVAA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + + ++ +I V S+ + R+ LA +GLP S SGYEL D ++ FG TS M Sbjct: 61 LEQQGVTYEVRND--AILVDSTRRDELRMILAGEGLPRSG-TSGYELLDGLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI S IVAARVHI F++ R + + K Sbjct: 118 FDAAYWRAKEGELARTIVSHPAIVAARVHIASTGANPFQRNVHRSASVSVSTNGAAVSAK 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A A++ LVA+AV +L DV+++D+ G LL+ E + + + Sbjct: 178 HARALQFLVASAVADLTPDDVSIIDAEGTLLSGAEEAKTNTAD------ERAEGLRLRAQ 231 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G N + E T+ RE +DP+ +V S + A S + V Sbjct: 232 RLLEARVGHGNAVVEIALETVTQTESTRERRFDPEGRVAISTDTEERANTSNGTDNG--V 289 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S + E+ NYE+++ ++R+++A+++N Sbjct: 290 TVASNLPD--GDAAAAATSASENTETRERVNYEVSSTEREVIQQPGAIKRMTVAILINGI 347 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G + + L + +V +A G++ RGD +TI ++ F E V+ Sbjct: 348 TTPDASGTPIFAPRPEEELTALGDLVGSAVGLDETRGDALTIRTLQF-EPSAPTGTLVEA 406 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 ++ L+ T++ +LV + L++ L + + + P Sbjct: 407 GLLERLAIDTMTLVQSLVLAIVALVLGLFVLRPILSRPVPLATPQLSAPIRRAPVQDPAL 466 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + + +G++ + +I + + + +L+ R++ + RL +I +E +IL Sbjct: 467 TPL-SGVIEDGDIDVAGLSDVSEAPQISLRPRLDGG-TDDPVSRLRALIGQRQEETVEIL 524 Query: 547 RKWARSEIE 555 R W +E E Sbjct: 525 RNWLEAEEE 533 >gi|240140910|ref|YP_002965390.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens AM1] gi|240010887|gb|ACS42113.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Methylobacterium extorquens AM1] Length = 540 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 143/552 (25%), Positives = 253/552 (45%), Gaps = 19/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + T LG RI +A+V L + F V+ P L+ L + D + + Sbjct: 1 MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60 Query: 67 LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF Sbjct: 61 LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + +RA+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 AIRHL A+AV L V+++D G+LL E + G I+ + Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + +A +G R V AEL+++ + R +DP+S+V RS + ++ S T E Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P + + P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 357 DGVYAPGANGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFS 416 Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SF+ ++ V + TL+V + L R DA G L Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + + + + + ++IN + ++ R++ M+ + Sbjct: 477 ALAGAAGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527 Query: 541 RFAKILRKWARS 552 ++LR W Sbjct: 528 ETVEVLRNWIHD 539 >gi|317013789|gb|ADU81225.1| flagellar MS-ring protein [Helicobacter pylori Gambia94/24] Length = 567 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 116/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++ + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVLKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGASKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566 >gi|163856458|ref|YP_001630756.1| flagellar MS-ring protein [Bordetella petrii DSM 12804] gi|163260186|emb|CAP42488.1| flagellar M-ring protein FliF [Bordetella petrii] Length = 559 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 112/552 (20%), Positives = 205/552 (37%), Gaps = 76/552 (13%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + P Y L+ L+ D I AL + N+ +R S +G ++ VP+ V R+ LA Q Sbjct: 45 MWGREPDYKVLFANLDDRDGGAIVSALGQMNVPYRFSGDGRALLVPADRVYATRMQLAGQ 104 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP S G+EL D FG + F ++I R LEGE+AR+I++++ + +ARVH+ +P Sbjct: 105 GLPRGGS-VGFELLDNA-RFGASQFAEQINYQRGLEGELARSIEAMNTVQSARVHLALPR 162 Query: 161 MGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + PTASV++ A+ LVA++VP+L +++++D G+LL+ Sbjct: 163 QSLFVRDRQAPTASVLLHLYPGRSLGDAQVAAVAWLVASSVPDLTAENISIVDQNGRLLS 222 Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 A R + + + I+ I L +G N ++ AE++ ++ V Sbjct: 223 APLGEGRGLDADQSRLRRDIEQRTVERILTILNPLVGPGNVQAQASAEMDFARREQTSEV 282 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSL-------- 326 Y P+ + ++ SK S + + N P + + + Sbjct: 283 YRPNQEPGQAAVRSKQTSDSLQTGIDPAQGVPGALSNQPPAAAQAPIVNPPAAPQAAQGG 342 Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 ++ + NYE++ L+RLS+AVV Sbjct: 343 QPGQLAQAGQNAAQGAATQAAPRLPTNNRNDATINYEVDRTISHVKQPVGMLKRLSVAVV 402 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN Q + L ++ +V A G + RGD++ + + F + + Sbjct: 403 VNYL----PDSSGEPQPLPEEELTKLTNLVREAMGYSEARGDSLNLVNSQFNDKPV---- 454 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 L TV+ + L L + A+ N + + Sbjct: 455 KPPFWRDPELLDLVKTVLAWVFGLALALWLYRRLRPAVSNYLNPPVDPEEAEARR----- 509 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 Q++ ++ + + R M + Sbjct: 510 -----------------------QEMQREAQAAARAKEVNRYEDNLQRARDMATKDPRAV 546 Query: 543 AKILRKWARSEI 554 A ++R W + Sbjct: 547 AMVMRAWMTQDE 558 >gi|312115289|ref|YP_004012885.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100] gi|311220418|gb|ADP71786.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100] Length = 547 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 184/553 (33%), Positives = 288/553 (52%), Gaps = 20/553 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MAI DQ+ S LG R+ L +V + + + ++V+ D LYV L SDV Sbjct: 13 MAIRDQIDALRVSLLGLGARRLAALVAVGVAIVAIVGVGSYYVSRAEKDVLYVGLTASDV 72 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L EA I F + + I V +AR+ LA +GLP +++ +GYELFDK+ S Sbjct: 73 SRIGAVLKEAGIPFDSNSEANKIFVNRGDTARARMILAERGLP-NNATAGYELFDKLGSL 131 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ ITRVRALEGEIARTI+++ + +ARVH+VM D GSFR+ TASV+++ Sbjct: 132 GLTSFMQNITRVRALEGEIARTIEAMRAVNSARVHLVMADAGSFRREPQAATASVVVKPA 191 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQH 239 SA AIR +VA+AVP + V+VL + G +L+A + GK L + + + Sbjct: 192 GA-EPPSAAAIRQIVASAVPGMKPDHVSVLSTDGTILSAGDDGPGVASGKMLDLEKQVSR 250 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 EI NI K L LG+ NF ++V LN+D +QI E +DP+SK ERS R K++ S+ Sbjct: 251 EINDNIRKTLTPVLGLGNFETSVTVRLNLDRKQINETAFDPESKAERSTRTVKESSNSQN 310 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++VEQN+P P +S +++KEE +NYE+++KS+ T + Y++E +++ Sbjct: 311 TNQKWNISVEQNIPTDQQNTKPSDQSKRASERKEETTNYEVSSKSVTTQSEGYRVENIAV 370 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ L + D + + ++VS+A G++S RGD T+ ++DF F Sbjct: 371 AVVLNRKPLLAAADSAKTAP--DEQIRVVERLVSSAAGLDSLRGDKATVVALDFAGGNEF 428 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++F D + + + A L+ T+L +GL R+ + K Sbjct: 429 DQA-PSLTFWDHVMEGLGSYVIAAALLISTILFVAVGLRPSLRMILENKPKPAPQIAADK 487 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + P + + T P++ S + I +E Sbjct: 488 RTTPVLETVAATVETPDNAEGPPLPTP--------------SAKKNSPLKSVEKAIAEDE 533 Query: 540 ERFAKILRKWARS 552 E+ A +L W R Sbjct: 534 EKAAAVLIDWIRE 546 >gi|163853490|ref|YP_001641533.1| flagellar MS-ring protein [Methylobacterium extorquens PA1] gi|163665095|gb|ABY32462.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1] Length = 540 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 143/552 (25%), Positives = 253/552 (45%), Gaps = 19/552 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + T LG RI +A+V L + F V+ P L+ L + D + + Sbjct: 1 MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60 Query: 67 LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + G ++ P + + K R+ A +GLPS GYE+FDK ++F TSF Sbjct: 61 LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +Q + +RA+EGE+AR+I++I + AARVH+V+P+ F + P+A+++++ + Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 AIRHL A+AV L V+++D G+LL E + G I+ + Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + +A +G R V AEL+++ + R +DP+S+V RS + ++ S T E Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 VTV +P + + P+ +++ K EE +NYEI+ + T + +L+RLS+AV+V Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + G+ A Q + D+ +A I +V A G + RGD + + ++ F E + Sbjct: 357 DGVYAPGADGKPAYQPRSDAEIARIAALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFS 416 Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 SF+ ++ V + TL+V + L R DA G L Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 + + + + + + ++IN + ++ R++ M+ + Sbjct: 477 ALAGAAGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527 Query: 541 RFAKILRKWARS 552 ++LR W Sbjct: 528 ETVEVLRNWIHD 539 >gi|163781742|ref|ZP_02176742.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882962|gb|EDP76466.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] Length = 502 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 143/556 (25%), Positives = 237/556 (42%), Gaps = 60/556 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + L + +++ ++ ++ + V L + + P Y LY L D+N Sbjct: 3 DLNSTLKNIQERFSAMPLSQKALVVGLPAVIFSLLVTVLIYSLQPDYAVLYSNLSPEDMN 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + + +++ +G +I VP + V R+ LAA+G+P+ GYELFDK ++ G Sbjct: 63 AVLTELDKEGVKYKVGRDGRTILVPENKVRDVRLKLAAKGIPNKGV-IGYELFDK-STIG 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRA 179 L+ F Q + RA+EGE+ RTI I ARVHI +P+ F + P+ASV +R Sbjct: 121 LSEFQQRVNFKRAIEGELVRTILRFKNIEDARVHIALPEKSIFLRDEKEPSASVFIRLRP 180 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAI 237 + +AIR+LVAA++ NL +V V+D G+ LTAN E I K L I + Sbjct: 181 GAEITEEQVKAIRNLVAASIENLKPENVVVIDDKGRNLTANLDEGKEEISNKQLKIRREF 240 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + EIE + AL LG N + V EL+ Q RE YDPD S + K +++ Sbjct: 241 EREIERKVQTALEEALGYGNVKVRVSVELDFTKVQRREETYDPDMTAVVSEQ--KRKEKT 298 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + N+P + +L T+KKE +NYE++ K + + + K++RL Sbjct: 299 TGAPVGGVPGAAANIPPGTGAVQGQGGTL--TEKKETITNYEVSKKEVISVDNTLKIKRL 356 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+ V++NK D I KIVSAA G++ +RGDT+++ ++ F + Sbjct: 357 SVGVIINK-------------ELKDVNEESIKKIVSAAVGLDPKRGDTLSVVAVPFKKPA 403 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + +I +V V LL+ F L LR+ + Sbjct: 404 IAEEMGPPIPTWKKF------LIPGVVGAVMALLLVFGLLRFLRKKEAPAPVAVEVSAEE 457 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + T + + + Sbjct: 458 VATISGAEALRETARELE-------------------------------IVKTITEVARK 486 Query: 538 NEERFAKILRKWARSE 553 ++ A +L+ W R E Sbjct: 487 EPKKVAAMLKLWLREE 502 >gi|317180754|dbj|BAJ58540.1| flagellar MS-ring protein [Helicobacter pylori F32] Length = 567 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I ++I + +I +P V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ L + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T+ M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566 >gi|110677673|ref|YP_680680.1| flagellar MS-ring protein [Roseobacter denitrificans OCh 114] gi|109453789|gb|ABG29994.1| flagellar M-ring protein FliF, putative [Roseobacter denitrificans OCh 114] Length = 540 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 138/551 (25%), Positives = 235/551 (42%), Gaps = 13/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + T L R +I+A +A +P+ LY LE + A Sbjct: 1 MQQIVTAWTGLPLRRQVIVALATGAMFFAILAMSRMATAPNMTLLYAGLENGAAGDVVAA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + F + G SI V SS + R+ LA++GLP++S+ GYEL D ++ FG TS M Sbjct: 61 LEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEGLPANSTQ-GYELLDTLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI S I ARVHI F++ + + + + Sbjct: 118 FDAAYWRAKEGELARTIVSSPHISMARVHIASTGSNPFQRGVTPKASVSVTPSGAAITPQ 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 +AIR LV++AV L DV V+D+ G L+ + +G + ++ + Sbjct: 178 QGKAIRFLVSSAVAGLASEDVAVIDANGALIGNADEVAPTIGG-----EDKADVLKARVQ 232 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G N V + +++ IRE ++DP+S+V S ++ S + V Sbjct: 233 RLLEARVGFGNSVVEVSVDTVTESEAIRERIFDPESRVAISTDT-EERNTSSSEAGGGDV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S ++ E+ NYE++ + ++R+++AV+VN+ Sbjct: 292 TVASNLPDQDG--AGGENSSSQNNETRERVNYEVSETEREILREPGAIKRVTVAVLVNEM 349 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 +T+ G+ + +S L + +V++A G + RGD ITI SM L + Sbjct: 350 TITDEAGQETVTPRDESELEALRDLVASAVGFDEARGDIITIKSMGLQSVPLQGTAA-GT 408 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S M + + I + + TL++ + L ++++DA + Sbjct: 409 SLMSNFNIDVMSAIQMAILALVTLILGLFVVRPLLARNDLNDAPAVAALPGATDGETDGL 468 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYVSKQSDLRLLHMIEINEERFAKI 545 + + D S L I S +S+ RL MI ++ +I Sbjct: 469 GLDGEIDGDDFQLPDLPVISDFGDASGELPDLNIGSGMSEDPVDRLRTMIGERQDETVEI 528 Query: 546 LRKWARSEIED 556 LR W + E Sbjct: 529 LRSWLEDKEES 539 >gi|291277395|ref|YP_003517167.1| flagellar M-ring protein [Helicobacter mustelae 12198] gi|290964589|emb|CBG40442.1| flagellar M-ring protein [Helicobacter mustelae 12198] Length = 566 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 130/571 (22%), Positives = 226/571 (39%), Gaps = 27/571 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN-----SPHYDNLYVKL 55 M + Q + + +I+ ++ I F+ F S Y L+ L Sbjct: 1 MDLRAVFSQILNFFQRFSKKQRVIVIGGVIAAIAFFVFLIVFATNGKSRSDGYSVLFEGL 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D I L + I ++I N +I +P V + RI LA+QG+P +S G+E+FD Sbjct: 61 TPGDNALIIQHLQQNQIPYKI-PNEETILIPRDKVYEQRIELASQGIPKNS-KVGFEIFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + FG+T + +RA+EGE++RTI+S++ I A V I MP F PTASV Sbjct: 119 TKD-FGMTDEEHRVKFLRAIEGELSRTIESLAPIQKANVLIAMPKSSVFVSQQTPPTASV 177 Query: 176 MI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 M+ R I++LVAAA+PNL + +V ++ G+ L ++ + + Sbjct: 178 MLGIRQGAALTSAQIFGIKNLVAAAIPNLTVENVKLVSQNGEPLGEDDEITSSKEVAAAQ 237 Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L Q I+ +E I L+ + G D + V A+ + ++ + +YDP++ V Sbjct: 238 LKYKQNIERALEAKILNILSPVVGGEDKVVAKVNADFDFSQRKSLQEIYDPNNVVRSEQN 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 L + + ++ Q N+ V R E +K + +NYE+ Sbjct: 298 LEEKREGAQEKQIGGVPGAVSNIGPVQGLDSQNGR--EKYEKTQNTTNYEVGKTVNEIKG 355 Query: 350 DNYKLERLSIAVVVN---KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGD 404 + L RLS AVVV+ K L + G ++ + +IN +V A G N +RGD Sbjct: 356 EFGVLTRLSAAVVVDGRYKRVLNKEDGLEHMEFVPLSEAEMEKINLLVKQAIGYNQKRGD 415 Query: 405 TITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 +T+++ +F Q F F L + L +L+ L++ + Sbjct: 416 DVTVSNFEFNAKSQTFVPEGKMDRFASKLEMYLKPFTPLLKYLIVALIIFIFYRKIIVPF 475 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + T + N + + Sbjct: 476 AERMLETQ-----NNEEEKVESLFEATDDEDEDVNKFSEMRKRVEEQLGIGKNFNEEEVR 530 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++IE E A + + + EI Sbjct: 531 YDVLLEKTKNIIEKKPEEIAMLFKTLIKDEI 561 >gi|253996299|ref|YP_003048363.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8] gi|253982978|gb|ACT47836.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8] Length = 546 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 117/536 (21%), Positives = 213/536 (39%), Gaps = 49/536 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + P Y L+ D I AL + N+ ++ SD+G++I VP++ V + R+ LA Sbjct: 40 FWLWSQQPDYRVLFSNYSDKDGGAIVAALEKLNVPYKFSDSGTAIMVPAAQVHQVRLKLA 99 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A GLP N G+EL + FG++ F++++ R LEGE+ R+IQSI+ + AR+H+ + Sbjct: 100 ADGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERSIQSIAAVEVARIHLAI 157 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + +PTASV++ A+ HLVA++VPNL +VTV+D G L Sbjct: 158 PKPSVFVRDQQKPTASVLLNLRPGRTLDAQQVSAVVHLVASSVPNLPTTNVTVVDQNGNL 217 Query: 217 LTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 L+ +N+ + L V+ IQ I + ++ +G N R+ AE++ Q+ Sbjct: 218 LSDTTKKMGAKNLDPEQLKYVEEIQQSIVKRVESIISPIVGAKNVRAEASAEIDFSVQEQ 277 Query: 274 REIVYDPDSKVERSIRLS--KDAQRSETSQPESAVTVEQNMPHVSDRKV----------- 320 Y P+ + + + S + +S + N P + Sbjct: 278 AAETYKPNQQPDAAAVRSMQSNETKSANGETAGVPGALSNQPPPAATAPITTEANADANG 337 Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQ 378 P + +K +NYE++ ++RL++AVVVN + + G+ + + Sbjct: 338 QPASNATPTNTEKNLTTNYEVDKTVSYRQQPMGGVKRLNVAVVVNNMPVVDKKTGKVSYR 397 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +IN + A G N RGD++ I + F + + + + Sbjct: 398 ALTVAEKTQINDLAMQAMGFNKERGDSLAIVNTPFAGEPQEVLPAIPLWENPRVIENVKD 457 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 V+ V ++ L++ L L Sbjct: 458 VLRFAVGVIALLIIYRKVLKPLLNKLTTPPKAA--------------------------- 490 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + S S + + Q + + N A ++ W Sbjct: 491 VNQGEAPDAVVSISADGSNAAEKPAYTQKIETAKQIAKDNPRMVASVVANWTNGNE 546 >gi|15606425|ref|NP_213805.1| flagellar M-ring protein [Aquifex aeolicus VF5] gi|6225356|sp|O67241|FLIF_AQUAE RecName: Full=Flagellar M-ring protein gi|2983628|gb|AAC07196.1| Flagellar M-ring protein [Aquifex aeolicus VF5] Length = 489 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 126/556 (22%), Positives = 234/556 (42%), Gaps = 72/556 (12%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + L + +L + + + L+ + L A +++ +Y LY L D Sbjct: 1 MDKLREYLNLLKERFNALTPVQKALAVGIPLLLLSLGAVALIYLSQENYTVLYTGLSPDD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +N + L + + ++IS +G +I VP ++ + R+ LAA+G+P GYELFDK + Sbjct: 61 LNAVVTELDKEGVKYKISPDGRTIYVPENVARELRLKLAAKGVPRKGI-VGYELFDK-SG 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 L+ F Q + RA+EGE+A+TI S+ + ARVHIV+P+ F + ASV ++ Sbjct: 119 IVLSRFQQLVNFKRAIEGELAKTIMSLDCVEFARVHIVLPEKSLFIREEEEAKASVFLKL 178 Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQA 236 + +AIR+LV+ +V NL V V+D G+ LTA + E L + + Sbjct: 179 KPGCELTPEQVKAIRNLVSGSVENLKPSQVVVVDDKGRDLTAYLDEEFKTNASQLKVKRE 238 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + +E + K L G + V AEL+ + + RE +YDPD S + K+ Sbjct: 239 FEKSLERKLQKTLEEVFGYGKVKVNVSAELDFSSMKKREELYDPDLTAVVSEQKKKERTT 298 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S + + N+P + R+ T++KE +NYE++ + I K++R Sbjct: 299 STR--AQGIPGTQANIPPATGRQGGGE---LITERKESITNYEVSKREIYFEDKTIKVKR 353 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +S+ +V++K E+ ++ A+ G++ +RGD ++I S+ F++ Sbjct: 354 ISVGLVIDKDVKVNT--------------EELKNLIIASAGLDPKRGDQVSIVSVPFVKP 399 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + +++ + + +L++ L L +L Sbjct: 400 TVVAEKPKVPTYV------------YVAVALVSLVILGLVAFGLVKLLRRRPPAPTPAPA 447 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + P + K LL + + Sbjct: 448 VPGVPP-----------------------------------TVEEVRKKTPYEELLEIAK 472 Query: 537 INEERFAKILRKWARS 552 E+ A +L+KW + Sbjct: 473 QEPEKVAMVLKKWLKE 488 >gi|114764044|ref|ZP_01443283.1| flagellar M-ring protein FliF [Pelagibaca bermudensis HTCC2601] gi|114543402|gb|EAU46417.1| flagellar M-ring protein FliF [Roseovarius sp. HTCC2601] Length = 546 Score = 333 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 135/555 (24%), Positives = 227/555 (40%), Gaps = 14/555 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L Q SLG R +++ + L I +A + P LY LE + A Sbjct: 3 LQQLATIWGSLGGRRRVLVIAATLATIAAVLAMGRMASQPSMALLYAGLEQGAAGEVVAA 62 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L I + + G +I VP R+ LA++GLP++S N GYEL D ++ FG TS M Sbjct: 63 LEARGIPYEVR--GGAILVPDMQRDSLRMTLASEGLPANS-NQGYELLDGLSGFGTTSQM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + I ARVHI F++ + + + + Sbjct: 120 FDAAYWRAKEGELARTIVASPYIATARVHIANSTANPFQRDVSPSASISVTTNGDVLSPV 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A A+++LVA+AVP L DV V+D G L+ A + + + + Sbjct: 180 QARALKYLVASAVPGLMPEDVAVIDGKGGLIGAEDDSGAGPT-----AEDRAALLRDRVQ 234 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G+ N V + +++ IR+ +DP+ +V S +++ S+ S Sbjct: 235 RLVEARVGLGNAVVEVSVDTVTESETIRQRQFDPEGRVVISTDTEEESSSSQDSGGGDV- 293 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 +V N+P S + + E+ NYE++ T ++RL++AV+VN Sbjct: 294 SVASNLPDGEA--GGGDSSQSQSSETRERVNYEVSETMREVTRMPGAIKRLTVAVLVNGT 351 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G + LA + +V++A G RGD ITI SM F + +G V+ Sbjct: 352 LAAGADGAEQFVPLPEGELAALRDLVASAVGFEEARGDAITIRSMPFERPEGLGTGPVEP 411 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP-PI 485 + + T+I V V L++ + + G ++ Sbjct: 412 GWFS-MPLDPMTLIQIGVLAVVALILGLFVVRPILTAPAQAALPGATDGALALPGGGVEP 470 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 A G + + + + +S + RL +IE + +I Sbjct: 471 GGAALDGEIDDGDFGGLPALGGGGDFGGMGMVDFDSPAEEDPVDRLRGLIEERKSETVEI 530 Query: 546 LRKWARSEIEDRYTQ 560 LR W + EDR + Sbjct: 531 LRSWL-DDGEDRTEE 544 >gi|300024598|ref|YP_003757209.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC 51888] gi|299526419|gb|ADJ24888.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC 51888] Length = 561 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 181/559 (32%), Positives = 302/559 (54%), Gaps = 15/559 (2%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q + S LGR R++ L + + L +F + ++ LYV L D++ + Sbjct: 5 QFQNLYSSLKGLGRQRLMALGAAGFLVFALISIGSYFASRSSFETLYVGLTPPDISSMGR 64 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L++A I F S +G+ + V +AR LA +GLP S N+GYELFDK+ + GLTSF Sbjct: 65 ELAQAGIPFEASLDGTKLGVAVGQAEQARALLAEKGLP-GSPNAGYELFDKLGALGLTSF 123 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQE+TRVRALEGE++RTIQ + GI AARVH+ +PD R PTASV+I+ S Sbjct: 124 MQEVTRVRALEGELSRTIQYLKGIRAARVHLYLPDQNGLRTKKQTPTASVVIKTDVASDA 183 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMN 244 +A AI+HL+AAA+P++ +V V+ + G LL + ++ + L + + I +++ + Sbjct: 184 TAAPAIKHLIAAAIPDMKPDEVQVIGTDGTLLGGSGSPSGDVPVQMLDLERTISTQVQDS 243 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + +AL+ +LG+DNF + +A LN+D Q E YDP+SKVERS R+ K+AQ S + Sbjct: 244 VRRALSPYLGIDNFEVSAIARLNIDKHQTTETKYDPESKVERSTRVIKEAQSSTDGSGRT 303 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V+VEQN+P+ + ++ D+KEE +NYEI++ S +TT + YK+ +S+AVVVN Sbjct: 304 DVSVEQNIPNEAP--TTKEQNKRAQDRKEETTNYEISSHSASTTSEGYKVNNISLAVVVN 361 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 K R+ E++G+ A I+ +AEI K+ +A G++++RGD I++ +++F ++ + Sbjct: 362 KKRIAEIIGKDAKTEDIEKQVAEIEKVALSAAGLDTKRGDRISVAAVEFAQSPFGDITAP 421 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + +L T I +L L+ +V F G RL A G ++ + Sbjct: 422 STDWSVMLMGLAGTGIKSLTILLIAAIVVFAGFKPAMRLLLTGSAATAIEGNGAVAALAG 481 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ-----------SDLRLLH 533 A G+ ++ +S + +S + +L Sbjct: 482 PPIADAGGVTAPLDMPEMASPLLEPGANPFDSDFGSSGFAGDGMSFGRSLAFGPVEKLGA 541 Query: 534 MIEINEERFAKILRKWARS 552 +I+ +E++ I++ W ++ Sbjct: 542 IIDRDEDQATAIMKHWVKN 560 >gi|307637039|gb|ADN79489.1| flagellar M-ring protein [Helicobacter pylori 908] Length = 567 Score = 333 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 116/576 (20%), Positives = 231/576 (40%), Gaps = 26/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54 M + L + L + + + L + ++ L + + Y L+ + Sbjct: 1 MDLKVLLQRIVDFFIKLNKKQKIALIAAEVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L+ SD I L + I +++ + +I VP V + RI LA+QG+P +S G+E+F Sbjct: 61 LDSSDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTS-KVGFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + FG T F Q I +RA+EGE++RTI+S++ I+ A VHI +P F P+AS Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229 VM++ I++L+AAAVP L + +V +++ G+ + + + + + Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 L Q ++ +E I LA + G + + V AE + ++ + +DP++ V Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 L + + + Q V N+ V K + E +K + +NYE+ Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355 Query: 349 HDNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + L RL+ AVVV+ + + D L +IN +V A G N RGD Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415 Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +++ +F + ++ T M + + + +++ +++ + Sbjct: 416 VAVSNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + D + + + R Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + ++ ++ + A + + + EI + Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566 >gi|239909140|ref|YP_002955882.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1] gi|239799007|dbj|BAH77996.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1] Length = 547 Score = 333 bits (852), Expect = 7e-89, Method: Composition-based stats. Identities = 121/564 (21%), Positives = 229/564 (40%), Gaps = 35/564 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + ++ + ++LA + + F+ F +N P LY + D +R Sbjct: 5 LKQNFEKLIQYWSNRSAAQRIMLAGLAASLVAAFVVMLFILNQPDMRVLYTNMPQEDASR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + + + DNG+++ VP+ V + R+ +A +G+ G+ELFD++ G Sbjct: 65 VVELLKASKTPYELRDNGATVLVPAEAVYEQRLKVAGEGVMR-GQGIGFELFDEL-KVGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180 T F+Q I RAL+GE+ARTI + ARVH+V+P F + + TASV++ Sbjct: 123 TDFVQRINYTRALQGELARTISEFPQVEKARVHLVLPHKSLFIEEQKKATASVVLTLRKG 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237 K + I +LVA +V L +TV D+ G+ L + + Sbjct: 183 QKLDAKQLQGIVNLVAMSVEGLTPDHITVTDTAGQSLYQPRGDGGLDGLTTTQFEYKNTF 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +E + + L LG + V AEL+ + IR+ +YDP++ V RS + S+++ Sbjct: 243 ESNLENRLEQILTPILGPGRSLAKVNAELDFAQRTIRKELYDPNATVVRSEQKSEESTSG 302 Query: 298 ETS-QPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + T + S + ++++ + +NYEIN + Sbjct: 303 TAAVDASGVTTTPRGGGQAVPNTNFRGEGYSGTESTQKSNRENKTTNYEINKEEQNVVTP 362 Query: 351 NYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 L+R SIAV+V+ + L I +IV+ A G+++ RGD I ++ Sbjct: 363 VGDLKRQSIAVIVDGTYEKVEGTKNWKFVPRSAEELERIKQIVARAAGLDAARGDEIQVS 422 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 S +F ++ + ++ R IN L+ + + L + + Sbjct: 423 SFEFGAPDGSAEPSLVQTMLEYAQRLGKPFINGLLIFLFLI----LVVRPVVLALIRPRV 478 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E+ L A+ + + A+ + + Sbjct: 479 TEEEIETLERLPEGEARLALAEAVESEEAAAMLEP----------------GRQFELAKH 522 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 L + E N E+ +L+ W + E Sbjct: 523 LALQLFEENMEQSISLLKSWLKQE 546 >gi|94269516|ref|ZP_01291482.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] gi|93451190|gb|EAT02103.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1] Length = 511 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 124/544 (22%), Positives = 228/544 (41%), Gaps = 41/544 (7%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 ++ + V+ + +A L+ L D + L E NI +R+SD Sbjct: 1 MSQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSD 60 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G++I VPS+ V + R+ LA +GLP G+E+FD+V G T F+ + RAL+GE Sbjct: 61 TGNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGTTDFVNRLNLQRALQGE 118 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVA 196 +ARTI+ I ARVHI P F + TASV +R ++I +LV+ Sbjct: 119 LARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVS 178 Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 AVP L +T++D+ G+LL ++ + G L Q I+ + L +G Sbjct: 179 TAVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVG 238 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 V+ R++V A+++ + + E ++DP+ +V RS ++ +A + +Q + + Sbjct: 239 VNRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-RGNQARGIPGAKGELAT 297 Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374 +D S + + + NYEI+ ++ T ++RLS+AV+V+ Sbjct: 298 FADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEE 355 Query: 375 ----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 + + + + +++S A G N RGD + + SM F + + + Sbjct: 356 GRTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWR 415 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 +++ A LV+L+ V + RL D + ++ + + Sbjct: 416 EMAQWLAM---PLVYLLIAFGVMLFVVRPFLRLLAAKDLEAKRASQRATVGRAEGEAEDE 472 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 L D R+ + + + +R A ++R+W Sbjct: 473 DDLSMGPRGLSDQ-------------------------ERIYRLAQSDPDRAADLVRRWL 507 Query: 551 RSEI 554 R E+ Sbjct: 508 REEV 511 >gi|115523187|ref|YP_780098.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53] gi|115517134|gb|ABJ05118.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53] Length = 544 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 193/555 (34%), Positives = 314/555 (56%), Gaps = 14/555 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + + + LG R+++LA V L + ++++ P ++ LY L DV Sbjct: 1 MVNREYAQKLWGNLLELGPRRLVLLALVGLAVFIGVGGGAYYISRPEFNVLYSGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+S AL +ANI F ++ G ++ V +AR LA +GLP SS++ GYELFDK+ S Sbjct: 61 TRVSAALRDANIAFDVNATGDTVLVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP GSFR+ P+ASV++R Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQPVPSASVVLRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239 P+ ++A ++RHLVAAAVP + VTVLDS G LL ++E +L+ + + + Sbjct: 180 GPAEARTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGSDEDGVGSTPTTLANLQRVVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I+ N++KAL +LG+DNF +V +L+ D +Q E +YDPDS+V+RS+R ++ + S++ Sbjct: 240 SIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETIYDPDSRVQRSVRAVREKETSQS 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 ++ TV+QN+P S E ++E+ +N+E+++K+I TT D + + ++ + Sbjct: 300 LDRQTPTTVQQNLPDQQVNAGNGNNSNEEKQRREDVTNFEVSSKTITTTSDGFAVTKMFL 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AV+VN+ RL LG A + I++ +AEI ++ + A GI+ RGD I +++++F+E Sbjct: 360 AVLVNRPRLVASLGDKASEAAIEAKVAEIAQLAATAAGIDRPRGDQIQVSAVEFIEGGRD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + VSF D+L R +V++A+ L ++ + GL + Sbjct: 420 LAPVPGVSFTDVLMRQAGSVVSAVTILAVAGMLIWFGLRPAINTVL------------AG 467 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 S + A ++ Q + NL ++ RL +++++E Sbjct: 468 TKSNEASQLLMNEGAGLLAGAGGAAAQLGHEATPNLVGDVSMRAQHAPQRRLEQIVQLDE 527 Query: 540 ERFAKILRKWARSEI 554 ++ A IL++W R E Sbjct: 528 KQAAAILKQWIRQEE 542 >gi|269836582|ref|YP_003318810.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM 20745] gi|269785845|gb|ACZ37988.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM 20745] Length = 535 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 128/555 (23%), Positives = 233/555 (41%), Gaps = 32/555 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q+ + + L + + + +V++ +M Y + L D I Sbjct: 5 QIERIRNAWNRLSMNQRVAVIAVVITAVMALGLLIATRPPQRYGIAFSGLSSEDAAAIVE 64 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I + +S +G +I VP+ V R+ A+QGLP S+ G+ELFDK +S GLT F Sbjct: 65 NLRAQGIPYELSSDGGTIRVPADQVAAVRLDAASQGLPRGGSD-GFELFDK-SSLGLTDF 122 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183 Q + RA+EGE+ RTI I + AARVHIV+P+ F + TA+V+++ Sbjct: 123 TQRVNYQRAIEGELERTIAKIDAVEAARVHIVIPEESLFIEEQQPTTAAVVLKLKSGRQL 182 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILG--KSLSIVQAIQHE 240 I HLV+ AVPNL ++TV+D+TG + + + G + + QA + Sbjct: 183 TEAQIRGITHLVSGAVPNLQPENLTVIDNTGNPIWSGPDGGSQFAGLDERFRLQQAYEQN 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSE 298 +E + + G + V A LN D + + +Y PD RS + + Sbjct: 243 LERQLQALVNPIAGPGHAVVRVSATLNWDERSSQSEIYSPDGLQPQVRSQQEREQRTSGT 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 ++ V++N+ + P S + +E +NYE++ + +++RLS Sbjct: 303 VTETGGVPGVDENVQTFP--ETPGAGSQSESSSREVTTNYELSRRIEEVVQAPGQVQRLS 360 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +AV+++ ++ + EI ++SAA G+ +RGDTIT+T++ F + Sbjct: 361 VAVMLDGSQV------------DPAVAQEIQDVISAAAGLVPQRGDTITVTAVPFSDVGN 408 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + + T + L + L+ + L + GE+ Sbjct: 409 RELIPDGGT---PILEYALTALKVLGLIAIPLVALYFARRVLVK-----PEDAGELTPAL 460 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 P + + I + + + QS + L+++ + + Sbjct: 461 ATVGGPAVTEPPMPALATQRITISETPPQLEDEDP-SQSTDRGLPQLPAHLQVIELANTD 519 Query: 539 EERFAKILRKWARSE 553 + A++LR W E Sbjct: 520 PAQVAQLLRAWMSEE 534 >gi|319764515|ref|YP_004128452.1| flagellar m-ring protein flif [Alicycliphilus denitrificans BC] gi|330826731|ref|YP_004390034.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601] gi|317119076|gb|ADV01565.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans BC] gi|329312103|gb|AEB86518.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601] Length = 564 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 125/536 (23%), Positives = 214/536 (39%), Gaps = 42/536 (7%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ P Y L+ L D I L++ N+ ++ ++ G +I VP+ V R+ LA Sbjct: 49 FFYGRQPEYRVLFSGLNDKDGGAIVAQLAQMNVPYKYTEGGGAIMVPAERVHDVRLRLAT 108 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 QGLP S +G+EL + N FG+T F + + R LEGE+ R+IQ+++ + +ARVH+ +P Sbjct: 109 QGLPK-GSVTGFELM-ETNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALP 166 Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 + F + +P+ASV++ I HLVA++VP L V+VLD TGKLL Sbjct: 167 NQNGFFREQQKPSASVLLTLYPGRILDRTQIAGIVHLVASSVPELAPSAVSVLDDTGKLL 226 Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 + + G + L+ VQ I+ + I L +G +N ++ V AE++ + Sbjct: 227 SQSPDGGAGSGVDAQQLAYVQQIEQQYTRRILDLLEPVVGKNNVKAQVTAEVDFSQTEST 286 Query: 275 EIVYDPDSKVERSIRLSKDAQRSE----TSQPESAVTVEQNMPHVSDRKVPLPRSLENT- 329 + P+ + S S+ S P N P + T Sbjct: 287 SEQHRPNLSPDASAVRSQQIVESGAAPAAQPPTGVPGAVSNQPPQGSTAPINGANPPPTA 346 Query: 330 -----------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-D 377 K+E +NYE++ + T ++R++ AVVVN ++E G+ A + Sbjct: 347 ANAQQAGQQAGGKRESITNYEVDKTTRVTRAGAGAIKRVNAAVVVNYQSVSEAPGKPAVN 406 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + ++ +V G N RGD++ + + FL + +++ Sbjct: 407 KALSPEQIEQMTALVRETIGFNKERGDSVNLMNAPFLVEDTPSVDLPLWKQPEVV----- 461 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + L + VG L L L L R + G + A P Sbjct: 462 ELARNLGWPVGISLAVALLLLGLVRPLLKARPRGVPAMGPQEGGGQLSAIAAEELERP-- 519 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + N A IL+ W E Sbjct: 520 -----------ALPAPVQPQDLQPTAEQLRLEDARKLARDNPVAVANILKTWVNGE 564 >gi|56695122|ref|YP_165469.1| flagellar MS-ring protein [Ruegeria pomeroyi DSS-3] gi|56676859|gb|AAV93525.1| flagellar M-ring protein FliF [Ruegeria pomeroyi DSS-3] Length = 534 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 134/549 (24%), Positives = 230/549 (41%), Gaps = 17/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q SL + + I+ LV + + SP+ LY LE + + Sbjct: 1 MQQIRSVWASLDKKKQFIVIGAALVVFLGVLGLTRMAGSPNMQLLYAGLESGSAGEVVRS 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS M Sbjct: 61 LEQQGVPYEVR--GGSIYVPAARRDELRLTLASEGLPANGGR-GYELLDSLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + + ARVHI F++ + ++ + + Sbjct: 118 FDAAYWRAKEGELARTIVASPHVAQARVHIANSSSNPFQRSIEPTASVSVVPSGSEVTPA 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A AIR+LVA+AV + VTV+DS G ++ E + + ++ + Sbjct: 178 QANAIRYLVASAVSGMVAEGVTVVDSNGNVIGTPETPTSSTSE------DRAQQMRERVL 231 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G N V + +T+ IRE +DP+ +V S + + + S+ + V Sbjct: 232 RLVEARVGRGNAIVEVSLDTVTETESIRERRFDPNGRVAISTDVEERSDASKNQTTD--V 289 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S +T E+ NYE++ ++RLS+AV+VN Sbjct: 290 TVASNLPDGDGAV--GDESNSSTSATRERVNYEVSETETEILRTPGAIKRLSVAVLVNGL 347 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G S + + LA + ++V +A G N RGD IT+ SM+ L N Sbjct: 348 PGAAQDGSSQFTPRPEEELAALRELVESAVGFNQDRGDVITLKSME-LPNLEPQGTLASS 406 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S + L+ ++I + TL++ + + A V S + Sbjct: 407 SMLQGLTFDLMSLIQMATLALVTLVLGLFVVRPIL-TKPAVSAPLLAVAPPPNQSGAQSA 465 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 TG + + + + + + + S + RL MI +E +IL Sbjct: 466 GPALTGEIDDGSPRQNQLPGAATQQRGTVPALVGSSGT--PVDRLRAMIGDKQEETVEIL 523 Query: 547 RKWARSEIE 555 R W E Sbjct: 524 RSWLEENEE 532 >gi|329888114|ref|ZP_08266712.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568] gi|328846670|gb|EGF96232.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568] Length = 545 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 138/551 (25%), Positives = 228/551 (41%), Gaps = 12/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F ++ G R+ + V + +A V LY L++ + + IS A Sbjct: 1 MGGFTEALKRFGIGRLAAILGVAAGVAAVLVAVMLRVGQAPDALLYSNLDLREASEISAA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A I + +GS+I V VG AR+ LA +GL +S S GYE+FD + G T F Sbjct: 61 LDQAGIKYSSKGDGSTIFVSRDEVGTARLMLAGKGLVTSGS-VGYEIFDNQSVLGQTEFQ 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185 Q + RAL+GE+ARTI S+ GI +ARVHI MP F+ PTA+V++ Sbjct: 120 QNLNEQRALQGELARTIMSMRGISSARVHITMPRREMFQAAAIDPTAAVVVGLSGRDLSA 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI-VQAIQHEIEMN 244 AIR++VA++VPNL VTV D + L A + + + + +++ Sbjct: 180 DQVRAIRNVVASSVPNLKPDKVTVTDQANRTLAAGSEDTGFTSATAEASKASTEAQMQAR 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + +G R V A+++ +E +DPD +V RS + + T Q + Sbjct: 240 IKDIVEGVVGAGAARVQVTADIDHSRSTTQEQKFDPDGQVVRSTSTNGSQSQDTTGQQDG 299 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VT N+P + E +NYEI+ + T + ++++LS++V V+ Sbjct: 300 GVTATNNIPGGQA--PNTTPIGSTNSENTETTNYEISNTTTTTVKEPGEVKKLSVSVAVD 357 Query: 365 KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 G + + +I +V+AA GI+ RGD + + ++ F G Sbjct: 358 GKYTPAADGKGEPTYAARTAEEVQQIKALVAAAVGIDETRGDKLEVVNVRFSREPSAAPG 417 Query: 423 TVQ-VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + S + L+ V ++ F L L + G I Sbjct: 418 AEEGSSMFAFDKNDIMRGVELLILAVTGFVLVFFVLRPLLKAATGSGGAPALAGAGGIPV 477 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + V L + S+ R +RI V S ++ ++ + E Sbjct: 478 TALDTQIVGGTLPGGAPMLAGPSDM----EQRIDIARIEGQVKASSIKKVADFVDSHPEE 533 Query: 542 FAKILRKWARS 552 ILR W Sbjct: 534 STAILRSWMHE 544 >gi|326796470|ref|YP_004314290.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1] gi|326547234|gb|ADZ92454.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1] Length = 558 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 114/561 (20%), Positives = 219/561 (39%), Gaps = 36/561 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + L R L L + I + +AA + + P Y + + + ++I L+ Sbjct: 16 ELLTGFNKLTVIRQLALMVGLAASIAIALAAVLWSSGPDYKPVLSSITDYNADQIVEILN 75 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 +I F++ N ++ V +AR+ LA G+ S G E+ D+ + G + F++ Sbjct: 76 TNSIPFKLDQNTGALLVEDEYYHQARLKLAGSGIVSDKI-VGLEIMDQDQALGTSQFIET 134 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186 R LEGE++RTI S+ + +ARVH+ +P F + +PTASV + Sbjct: 135 ARYRRGLEGELSRTITSLQSVKSARVHLAIPKESVFVRDTRKPTASVFLELYPGRRLDRS 194 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244 +AI +LVA+++ L DVTV+D G LLT + + GK + ++ + Sbjct: 195 QVDAIVNLVASSISQLSDKDVTVVDQRGTLLTDKDSSSELSIAGKQFDYTRRVEEVMLRR 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 +N L +G F++ V A+++ + + Y+PD RS + K+ + S Sbjct: 255 VNNILMPVVGSGRFKAEVSADIDFTAVEQTDEQYNPDLLALRSEQTLKERRSSAG-GNNG 313 Query: 305 AVTVEQNMPHVSDRKVPLPRSL------------ENTDKKEEQSNYEINTKSIATTHDNY 352 N P + K+E N+E++ T Sbjct: 314 VPGALTNQPPGAINAPEQAAVNGAPIGGGSGSSGTGQSKEETTRNFELDRSISYTKRQQG 373 Query: 353 KLERLSIAVVVNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RLS+AVVV+ D L+ + +V A G + RGD++++ + Sbjct: 374 TVRRLSVAVVVDDVASLNTETSEIERAPWSDEELSRLTLLVRDAVGYDPSRGDSVSVINS 433 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + V + F ++ + + L++ + + + + Sbjct: 434 PFALPEPPVAPEVIPFYKQT---WFLNLLQPALVGLFILILLLVVVRPILKTL------S 484 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + A T + +D ++L S+ + S R + Sbjct: 485 EQNKIAVAEDTEAAIFADETDEISDDQVSLVSAEDVMVPGSPEKIDR--------QLNAI 536 Query: 532 LHMIEINEERFAKILRKWARS 552 +I ER A+++++W Sbjct: 537 RGLIAEEPERVAQVVKQWVME 557 >gi|88813200|ref|ZP_01128440.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231] gi|88789522|gb|EAR20649.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231] Length = 580 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 115/563 (20%), Positives = 204/563 (36%), Gaps = 48/563 (8%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + L + + + +A + P Y LY L D + ++ AL ANI R+ Sbjct: 40 ALRQMGLIIGLALAVAAGLALFMWAQEPTYRALYANLPTQDASAVADALQTANIPHRLDT 99 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 N +I VP+ + +AR+ LA QGLP + G+E + FG + FM+ RALE E Sbjct: 100 NSGAILVPAQRLSEARLKLAGQGLPHTGG-VGFESLRQEQGFGTSQFMETARFQRALETE 158 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVA 196 +ARTI ++ + +RVH+ +P+ F + P+A+V I AI HLVA Sbjct: 159 LARTIDALDPVARSRVHLAIPERSVFVRDRKTPSAAVSIGLYPGRVLSSGQVLAIAHLVA 218 Query: 197 AAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 +AVP + VT++D G+LL+ N + L+ ++ I L + Sbjct: 219 SAVPAMTASAVTIVDQRGRLLSRVANEGEGLNATVQQLAFRHRVEEAYARRIEDLLTPIV 278 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G + ++ V A ++ Q+ E +Y P+ V RS + K+ + + + N P Sbjct: 279 GAGHVKAQVNARVDFSAQERTEELYQPEQSVVRSEQSMKE-RTERSQKAIGVPGALSNQP 337 Query: 314 HVSDRKVPLPRSLENT------------------DKKEEQSNYEINTKSIATTHDNYKLE 355 + P + NYEI+ + Sbjct: 338 PGTGTLQPAQPGKSGKPVDQQEAANQTSAPELVDSRISHTRNYEISKTIHHVRTPRGAIT 397 Query: 356 RLSIAVVVNKGRLTEVLGRSADQG---KIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 RLS+AV++++ + LAE+ ++V G ++ RGDTI + S Sbjct: 398 RLSVAVLLDRPAIAAKTKDKTQAPPQVDPQVELAELTELVKQVVGFDADRGDTINLISSP 457 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + + L+ + L++ + L Sbjct: 458 FQPPEEAPPAHTPLWQQP----WVSEGGKLLLASLLGLVLILAVVRPLV----------- 502 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 L S + + D+ + + Sbjct: 503 -----HGLLGRDRSERPDSAAQAQIHGGADADADAALTGPAEPKRLGTVSDYNDRLQIAR 557 Query: 533 HMIEINEERFAKILRKWARSEIE 555 ++ A +++ W E E Sbjct: 558 DVVGKEPAVAANVMKHWLAQENE 580 >gi|315452715|ref|YP_004072985.1| Flagellar basal-body M-ring protein FliF [Helicobacter felis ATCC 49179] gi|315131767|emb|CBY82395.1| Flagellar basal-body M-ring protein (FliF) [Helicobacter felis ATCC 49179] Length = 567 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 113/570 (19%), Positives = 217/570 (38%), Gaps = 25/570 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKL 55 M Q L + + + + S ++ + + + +Y L+ + Sbjct: 1 MDFKGLFQQIIDLFARLNKAQKITIVSAFVLVVAFLIFLLVYPTKGNNDLSNYGVLFEGM 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 + SD + L + I ++I + +I +P + + RI LA+QG+P +S GYE+FD Sbjct: 61 DNSDNALVLQYLQQKQIPYKIPKD-DTILIPKDKIYEERIALASQGIPKTS-KVGYEIFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + FG T F Q I +RA+EGE++RTI+S++ I A VHI +P F PTASV Sbjct: 119 TKD-FGATDFDQNIKYIRAIEGELSRTIESLTPIDKASVHIAIPKDSVFVSREIPPTASV 177 Query: 176 MIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 M++ K I++L+AA+VP L + +V +++ G+ L ++ + + Sbjct: 178 MLKIKPNMRLLPKQILGIKNLIAASVPKLTVENVKLVNENGEPLGEDDELDTTKELAQAQ 237 Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L Q ++ +E I+ LA + G D + V AE + ++ + +DP++ V Sbjct: 238 LHYKQNFENLLESKISNILAPIVGGRDKVVAKVSAEFDFSQKKSTKETFDPNNVVRSEQS 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + Q V N+ V V + E +K +NYE+ Sbjct: 298 MEEKREGYPKKQVGGVPGVVSNIGPVQG--VANDQLKEKYEKSTNTTNYEVGKTVSEIKG 355 Query: 350 DNYKLERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + L RL+ AVVV+ K + +IN +V A G + RGD + Sbjct: 356 EFGVLTRLNAAVVVDGRYKKVDKNGTETIEYVPLSAEEMDKINALVKQAIGYSQSRGDAV 415 Query: 407 TITSMDFLENQLFNSGTVQVSFM-DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 +++ +F + R+ + +L+ L++ + Sbjct: 416 AVSNFEFNAKTAKYVPISAYEKFVNTTERYLGPFSSLFKYLIIGLILYVFYKKVITPFSQ 475 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + K + + + Sbjct: 476 RMLEIQPDEEEKVQSLFAMDEDDEEEIDRFGEMRKKVEDQLGLSASFNE-----EDVKYD 530 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555 R+ ++ A + + + E+ Sbjct: 531 IMLERVKGALKEKPAEVASLFQLLIKDEVA 560 >gi|209963531|ref|YP_002296446.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] gi|209956997|gb|ACI97633.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW] Length = 573 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 153/549 (27%), Positives = 256/549 (46%), Gaps = 5/549 (0%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + ++ +LG+ R+++LA+ ++ F ++ LY L+ ++ RI Sbjct: 24 VANLLQNLRALGQRRLMLLAAAGAGVLLAVALVAFGLSRAPMGLLYAGLDDAEAGRILTQ 83 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + +++S G +I +P + + R+ LA QGLPS+ +GYELFD+ + GLTSFM Sbjct: 84 LQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAGG-AGYELFDEQGALGLTSFM 142 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVY 185 Q + + RALEGE+ARTIQ+++G+ +ARVH+ MPD +F A ASV++ Sbjct: 143 QRLNKARALEGELARTIQTLNGVKSARVHLSMPDGEAFAPGAAPAGASVVVRTVTGGLDR 202 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 A AIRHLVAAAVP L G VTV+D++G +L A+ + L + + A + + Sbjct: 203 SQALAIRHLVAAAVPRLQPGAVTVMDASGVVLAADGGATDGLALLHAEELRSATETRLAR 262 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I + L G N R V AE+++ + +RE +DP+S+V RS + ++ + S + Sbjct: 263 AIEEMLVPRFGPGNIRVRVAAEIDLGRETLREQTFDPNSRVLRSTQTVEERESSLDRDTD 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 TVEQN+P + S + ++EE +NYEI++ D ++ RL++AVVV Sbjct: 323 QPTTVEQNLPLEAADAQAPQGSRSESAREEETANYEISSILRERAQDAGEIRRLAVAVVV 382 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N + G+S Q + D L+ I +V A G + RRGD + + ++ FL Sbjct: 383 NGSYVPGADGKSVYQPRSDEELSRIEHLVRTAIGFDDRRGDMVAVENLQFLAGPEEPVAA 442 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 ++ ++ +V V +LV L L L A Sbjct: 443 PATE-PGLVGNDMVRLLQWVVLGVVAVLVILLVLRPLVLRSKEVPAPAAAQAAAPPQLAD 501 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + ++ + VS + RL +++ + E Sbjct: 502 ATTPVAGQLTHEGSDLVPAGEEGSQEMDDIVDLRSVEGGVSAAALRRLAGIVDEHPEESI 561 Query: 544 KILRKWARS 552 +LR W Sbjct: 562 TVLRTWIYE 570 >gi|126730036|ref|ZP_01745848.1| flagellar M-ring protein FliF [Sagittula stellata E-37] gi|126709416|gb|EBA08470.1| flagellar M-ring protein FliF [Sagittula stellata E-37] Length = 522 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 125/533 (23%), Positives = 217/533 (40%), Gaps = 14/533 (2%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +++ L ++ ++P Y LY LE + AL + + I G + Sbjct: 1 MVVLGATLAMVLAVWGLARLASAPSYSLLYAGLENGAAGDVVKALEARGVQYDIR--GGA 58 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP S R+ LA++GLP++ GYEL D ++ FG TS M + RA EGE+ART Sbjct: 59 IFVPDSDRDGLRLTLASEGLPANGGQ-GYELLDGLSGFGTTSQMFDAAYWRAKEGELART 117 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 I S I +ARVHI F++ + + + A A+++LVA+AVP L Sbjct: 118 IVSNPQIASARVHIANSSANPFQRDVTPTASISVTTTGGTLSAQQARALKYLVASAVPGL 177 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 + V V+D G L+ A + + + + A +GV N V Sbjct: 178 EPEGVAVIDGKGGLIGAEAEHGAGPT-----ADDKAALLRDRVQRLMEARVGVGNAVVEV 232 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322 + +++ IR +DP+ +V S + RSE VTV N+P + Sbjct: 233 SVDTVTESELIRSRSFDPEGRVVISTDTEESTDRSENQG-GGNVTVASNLPDGNA--GGG 289 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 S + E+ N+E++ + T ++RL++AV+VN + G + + Sbjct: 290 DTSSSQKAETRERVNFEVSETTREITRVPGAIKRLTVAVLVNGTYTEDGNGNQTFEPLPE 349 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 L + +V++A G + RGD IT+ S+ F + +G ++ + + Sbjct: 350 DELQALRDLVASAVGYDEERGDQITLKSLSFERPEGLGTGPLEPGLFTGVIDTMRLIQMG 409 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 ++ LV +L F+ L R + G + P L ++ + Sbjct: 410 VLALVALVLGLFVVRPVLARGAGGEAGMAGALPAPGEGDAGPALDGEIEPLGGFGDLPVM 469 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 D +S + RL ++I+ + +ILR W + E Sbjct: 470 GDGPDFSGLGMVD---FDSPPDEDPVDRLRNLIQERKTETVEILRSWLEEDRE 519 >gi|327399353|ref|YP_004340222.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411] gi|327181982|gb|AEA34163.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411] Length = 550 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 135/557 (24%), Positives = 239/557 (42%), Gaps = 18/557 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M L Q K ++ R + +IL S + V + + + Y L+ L D Sbjct: 1 MNFKLFLEQVKKFYNTMNRQQRIILFSSVGVLVAGILFILIASSKVAYAPLFTNLNAKDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + I L++ + +++ + G+ I VP MV R+ L A GLP G+E+FDK N F Sbjct: 61 SDIVTYLNQHGVKYKLINGGTVIEVPKDMVYSLRLDLVAAGLPKHGV-VGFEIFDKQN-F 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 T+F++ I +RALEGE+ RTI +I+ I +A+V+I +P F + PTAS+++ Sbjct: 119 STTNFVENINYIRALEGELTRTIANINEIKSAKVNIAIPKPTIFTESQQPPTASIVLDLY 178 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQH 239 P + AI+ LVA+AVP L DVT++DS G LL+ E+ + L Q I+ Sbjct: 179 KPLTRQQIVAIQKLVASAVPGLSYKDVTIVDSDGNLLSVNIPDEQLLTANELKYKQFIEQ 238 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + I LA LG D F +V EL++ + + ++YDP+S + + S T Sbjct: 239 RYKSRIKSMLAPILGKDKFVVSVDVELDLSKIKKKSVIYDPNS---VVVSEENEESTSTT 295 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 V N+ + + K + +NY++ T K++++S Sbjct: 296 PTSGGVPGVISNI--DNKTNAAAASGTAKSSKSKTITNYDVGRTETITEGPLIKIKKISA 353 Query: 360 AVVVNKGRLTEVLGRS-----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 AVVV+ + + + ++ I + V +A G +++RGD +T+T M F Sbjct: 354 AVVVDGIYEPVKNKKGKVVSYKFKSLPQNTISTIQQAVMSAIGYDNKRGDKVTVTCMKFA 413 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + G V + +++ + ALV + L ++ + + + + Sbjct: 414 MSGEKQMGNVSLGGGNMVVNLASYYKYALVAFLLALFYFLFLRKFIKNVMTVSSVRAKKT 473 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + + ++ G + +S D + R N ++ Sbjct: 474 EGTAETTSEELTENEVKGKSIREIEEEIASKLDEEGVVDEEKIRANMMED-----KIREA 528 Query: 535 IEINEERFAKILRKWAR 551 E N E A +L+ Sbjct: 529 AEENPEEIANLLKTLIS 545 >gi|121533763|ref|ZP_01665590.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1] gi|121307754|gb|EAX48669.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1] Length = 511 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 138/561 (24%), Positives = 233/561 (41%), Gaps = 60/561 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + D Q + SLG+ + LI AS V + + + ++ Y LY L++ D Sbjct: 1 MADWKEQSLQIWRSLGKKQRYLIAASAFFVFAAILLWSYWWGGRIDYVPLYTGLDLKDAG 60 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L E + +I NGS+I VP+ V + R+ LA+QGLP G+E+FD+ FG Sbjct: 61 EVVGKLKEMKVPHQIEANGSAILVPAKDVHRVRLELASQGLPR--GYKGFEIFDQT-KFG 117 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T F Q++ ++AL+GE+ RTI+ ++ + ARVHIV+ + ++K TASVM++ Sbjct: 118 ITDFQQKVYLLQALQGELTRTIEQMAEVEKARVHIVLAEDSLYKKNEKPATASVMLKLRP 177 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQ 235 + I +LVA ++ L +VTV+D+ ++L G L + + Sbjct: 178 GVQLSREQVRGIVNLVAHSIQGLKPENVTVVDNYARVLNDQVDTPFTAGTIPVTQLELTK 237 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 IQ +++ N++ L LG + V ELN D + I +++P D + RS++ Sbjct: 238 KIQEDLQKNVHTLLEQVLGPGKAAARVSVELNFDQRTIDRQIFEPIVDDKGIIRSMQEMS 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + R N+P V + N +KKE NYEIN Sbjct: 298 ETYRGSAPVAGGVPGTTANIPG----YVTGANNQSNYEKKEVTRNYEINETKEKVVTAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RL++AV+V+ + I K V++A G+N RGDTI++ S+ Sbjct: 354 AIKRLTVAVLVD-------------ASIDRAKQESIAKTVASAVGLNPSRGDTISVESIP 400 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + +F + I A + LL RL +K Sbjct: 401 FSTELQERQRREEQAFEQQQRQELWLKIGAAAIGLIALLYIM-------RLFVRRQQQKE 453 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E +I+ P P S + + + Q + Sbjct: 454 ESEVVTIVPPQPQSVPIKSKELTPQE-----------------------KERLQQRETVE 490 Query: 533 HMIEINEERFAKILRKWARSE 553 + + E A ++R W E Sbjct: 491 KLAKSKPEEVAHLIRTWLAEE 511 >gi|315127319|ref|YP_004069322.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913] gi|315015833|gb|ADT69171.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913] Length = 571 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 86/561 (15%), Positives = 212/561 (37%), Gaps = 27/561 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q +F + + R + L + + + + + + P L K++ ++ Sbjct: 27 EQKSGYFSALGGVDVLRQITLIVALAICLAIAIFVIIWARQPDMRPL-GKMQTEELIETL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L ID+++ +G+ +SV + ++ + +GL SG ++ + FG++ Sbjct: 86 DFLDAQKIDYQL--DGNVVSVDETEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 ++ E ++ARTI+ ++ + A+V + +P F + +P+A+V++ Sbjct: 143 RLERERLKHGREQQLARTIEELNNVTRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202 Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240 + +++ ++A+AV L+ VTV D G+LL + + + E Sbjct: 203 LDGEEVDSVVDMIASAVQGLEPSRVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + Y+PD RS ++ Sbjct: 263 YLEKIDSILIPVVGLGNYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENN--IGG 320 Query: 301 QPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P V+ + + KE NYE++T Sbjct: 321 LAVGIPGALTNQPPVNSTIPEDAMAGGAGTATSPSRTHKEATRNYELDTTISHKRQQTGV 380 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + R+S++V V+ G + + L+ I +++ G + +RGD + + ++ F Sbjct: 381 IRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPF 440 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + + D F ++ ++ + +++ + + + D E Sbjct: 441 VREDSALDFELPLWEQD----WFMKMMRLVLGALVIIVLILAVVKPMLKRLIYPDNTLEE 496 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 S+ S + + L + + A + D +L + + + Sbjct: 497 YDEDSLSSGVDLGDSTLDMLNNDFDSASVGFSSDGTLRLPDL------HGDEDLLKAVRA 550 Query: 534 MIEINEERFAKILRKWARSEI 554 ++ E +++++ W + Sbjct: 551 LVANEPELSSQVVKAWLTEDD 571 >gi|77359741|ref|YP_339316.1| flagellar MS-ring protein [Pseudoalteromonas haloplanktis TAC125] gi|76874652|emb|CAI85873.1| flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein [Pseudoalteromonas haloplanktis TAC125] Length = 571 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 89/561 (15%), Positives = 216/561 (38%), Gaps = 27/561 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q + + + + R + L + + + + + + P L K+ ++ + Sbjct: 27 EQKSGYLSALSGVDVLRQVTLIIALAICLAIAIFVIIWARQPDMRPL-GKMPTEELIQTL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L ID+++ +G+ +SV S ++ + +GL SG ++ + FG++ Sbjct: 86 DFLDAQKIDYQL--DGNVVSVDESEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ E ++ARTI+ ++ I A+V + +P F + +P+A+V++ Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240 + +++ ++A+AV L+ VTV D G+LL + + + E Sbjct: 203 LNSEEVDSVVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLSARSRKEYDLERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + + Y+PD RS ++ Sbjct: 263 YLEKIDSILIPIVGLSNYTAQVDLSMDFSSLEETQKRYNPDLPAVRSETTFEENN--IGG 320 Query: 301 QPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P V+ + + KE NYE++T + Sbjct: 321 LAVGIPGALSNQPPVNSDIPEVAGQGGAGSVTSPSRTHKEATRNYELDTTISHKRQQSGT 380 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + R+S++V V+ G + + L+ I +++ G + +RGD + + ++ F Sbjct: 381 IRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDIQRGDALEVVTVPF 440 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + S V + D F ++ ++ + +++ + + + D+ E Sbjct: 441 VREAVDMSFEVPLWEQD----WFMKIVRLVLAALVIIVLIMAVVKPMLKRLIYPDSTLDE 496 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ S I L + + A + D +L + + + Sbjct: 497 YDEDALSSGVDIGDNSLDMLNKDFDSASVGFSSDGTLQLPDL------HGDEDLLKAVRA 550 Query: 534 MIEINEERFAKILRKWARSEI 554 ++ E +++++ W + Sbjct: 551 LVANEPELSSQVVKAWLTEDD 571 >gi|117923585|ref|YP_864202.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1] gi|117607341|gb|ABK42796.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1] Length = 551 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 125/557 (22%), Positives = 221/557 (39%), Gaps = 37/557 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 SL T + + + + A +F P LY L + RI L Sbjct: 18 SLGGLFGSLPLTGRNGVIIAAMASVFILAAIIWFATRPSMKVLYSGLPDLESARIVEQLG 77 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 + + + + G++I +P V R+ +A GLP S+ G+E+FD + G+T F+Q Sbjct: 78 KLGVPYELGSGGTTIRIPEDKVYDVRLEMAKAGLPKSTDGVGFEIFDNQSLMGMTDFVQR 137 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188 + RAL+GE+AR+++SI+ + ARVH+V+P F TASV++ + Sbjct: 138 MNYQRALQGELARSVESIAAVEKARVHLVLPKKSMFAAEERTATASVVMELTHALNKTQI 197 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMN 244 + I H+VA+AV L VT+LD G L+ T + R +L++ + +IE Sbjct: 198 DGITHMVASAVEGLSQDQVTLLDQKGNLIAGGKTEDLDGRMPTDDALALQSMKEKKIEER 257 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L LG D + AEL++D +Q +E YDPD +V S ++ R Sbjct: 258 VQSLLDRVLGPDKSIIRITAELDLDKKQRQEESYDPDGQVPLSTNTVTESSRGM-FGTGG 316 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V N P+ + S + D + EQ N+ + K + RLS+AV+++ Sbjct: 317 VPGVIPNDPNQTA-VAGGTGSQQTRDVEREQVNFLVPKKVTTVQEAVGDIRRLSVAVMID 375 Query: 365 KGRL--------TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 + + + + ++ +I+ G +++RGD+I +T+ F Sbjct: 376 GTYEAVKDKDGNIDPEKPAVYTPRSTEEMEQLKRIIMQTVGFDAKRGDSIEVTNTAFEPL 435 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + + + L+ F + L I + ++ + Sbjct: 436 PPPLDVKSPW----LSREFQLEMAKYGAIALLAFLLVFFVMRPLVTKLLIPEEEQDDRLP 491 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 ++ A G +P D S I + +S MI Sbjct: 492 GTVADLERQLLAEGVGTIPVD-------------------SPIRMKIPDRSLQLAQQMIA 532 Query: 537 INEERFAKILRKWARSE 553 N E +I+R W + Sbjct: 533 DNLEEAREIIRSWMAQD 549 >gi|294678998|ref|YP_003579613.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003] gi|294477818|gb|ADE87206.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003] Length = 551 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 137/564 (24%), Positives = 240/564 (42%), Gaps = 27/564 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q L TR +++A ++ +A F + LY LE + + A Sbjct: 1 MQQLMAVWQGLDTTRRVLVAGATILMFAAILALSSFASRSDMALLYAGLEGARAGEVVAA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + G SI V ++ + R+ LA +GLP++ +GYEL D ++ FG TS M Sbjct: 61 LDARAVPYEVR--GDSIYVDAARRDELRMALAGEGLPATGG-AGYELLDGLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + I AARVHI P SFRK + + A Sbjct: 118 FDAAYWRAKEGELARTIVANPMIRAARVHIAAPSGQSFRKENHPTASVTVTTASGGLSPT 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+A++ LV++AV + DV+++DS L++ + N E+ N+ Sbjct: 178 HAKALKFLVSSAVQGMSPDDVSIIDSVAGLISTGDDVFNPAAN------DRAEELRSNVE 231 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G N V + + + I E +PDS+V S + +++S+ ++P AV Sbjct: 232 RLLEARVGYGNAVVEVSVQTVTEREAITEKRIEPDSRVAISTETQERSEKSDDTKP-GAV 290 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P +S + EQ N+E++ + + ++RL++AV+V+ Sbjct: 291 TVASNLPQGDA--ANGGKSQSQASETREQVNFEVSETTREVLRNPGDIKRLTVAVLVDGV 348 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G +A + D LA + ++V++A G + +RGD ITI SM F E Sbjct: 349 EGKDANGVTAITPRTDEELAALKELVASAVGFDEKRGDVITIRSMAF-EPLAETGTEATS 407 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S +I V + L++ + + + + + Sbjct: 408 SLFASAPLDTMQLIKIAVLAIVALILGLFVMRPILAQRAAAAEAERAMNLPGGMIGSDEG 467 Query: 487 SA-VTTGLMPNDNIALDSSNQDIFSHSRNLQSRI------------NSYVSKQSDLRLLH 533 + TG + + ++ + S N ++ + S + RL Sbjct: 468 TGRALTGEIADGDMPIGSMNVVSDFDIGDMPMTMGTGNFGDMGMGGESGQASDPVARLKK 527 Query: 534 MIEINEERFAKILRKWARSEIEDR 557 +IE + +ILR W E E+R Sbjct: 528 LIEERQAESVEILRSWM-DEAEER 550 >gi|114569237|ref|YP_755917.1| flagellar MS-ring protein [Maricaulis maris MCS10] gi|114339699|gb|ABI64979.1| flagellar M-ring protein FliF [Maricaulis maris MCS10] Length = 551 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 136/553 (24%), Positives = 238/553 (43%), Gaps = 10/553 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F+ + G R+ + + + M + LY L+ S+ S Sbjct: 1 MNALFEQFRAFGAGRLTAIFGLAVGVAAALMYFSGAMGGASQSLLYSGLDPSEAVATSQL 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +ANI + I + G++I V V +AR+ +A+ G P S ++ GYE+FD+ +SFG SF+ Sbjct: 61 LDQANIPYEIREGGTAIYVNRDQVDEARVRVASNG-PLSGASVGYEIFDRQDSFGQNSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q + RA EGE+ARTIQS++ + +ARVH+ +P+ F + PTA+V I + Sbjct: 120 QNLNAKRATEGELARTIQSLNYVNSARVHLNLPERRLFSRDQQSPTAAVTISTAGRLNSE 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNI 245 IR++VA++ + V++ D G+ L + ++ + + I+ ++ NI Sbjct: 180 QVRVIRNIVASS-SGIAPTGVSIADDRGRQLASGSDGQSAGSMIMDERRGEIEAQLRQNI 238 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + +G R V AEL+ + YDP+ V RS +D + ++ Sbjct: 239 LDIVEGVVGAGAARVQVNAELDRQSITQSSETYDPNGAVIRSRERGEDLSNDQDGANQNR 298 Query: 306 VTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V+ +N+P D + + E+ NYEI++ + + + RLS+AV V+ Sbjct: 299 VSASENLPDAGDGAGAEGSGSRSNRESTSERVNYEISSTTRTEIIEAGAINRLSVAVAVD 358 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR---RGDTITITSMDFLENQLFNS 421 T G + + S + I +V +A G S R D +T++ ++F Sbjct: 359 GVLETAEDGTVTWRERPQSEIDRIEALVRSAMGFVSEPGVRQDLLTVSQIEFARTD-PLL 417 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 GT S M V V LL+ FL L + + +G + + Sbjct: 418 GTAAASGMSFSKSDIMRAAEIGVMFVTALLIIFLVARPLVKGASGMAMPQGLALAGAGMD 477 Query: 482 PPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + T L PN +AL S+ +I+ V S ++ +++E + Sbjct: 478 GAVAGAPAPTALPSQPNRPVALPSAGGAGGREDSIDIEKIDGQVKASSLKKVANIVESHP 537 Query: 540 ERFAKILRKWARS 552 E ILR W Sbjct: 538 EESISILRTWLHE 550 >gi|225850271|ref|YP_002730505.1| flagellar M-ring protein FliF [Persephonella marina EX-H1] gi|225645356|gb|ACO03542.1| flagellar M-ring protein FliF [Persephonella marina EX-H1] Length = 529 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 122/563 (21%), Positives = 228/563 (40%), Gaps = 46/563 (8%) Query: 1 MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + L + + +L I ++ + +L+ L + A V Y LY L D Sbjct: 1 MDFNEILKKTSEFIKKNLNPRNIALIIAGLLLITFLGIIAFKTVTKEEYGVLYTHLNPDD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L E NI +++ +GS I VP + V + R+ LAA+GLP S G+E+F + Sbjct: 61 AGSILSVLQEENIPYKVEGDGSIILVPRNKVHEIRLKLAAKGLP-SGKTVGFEIF-EEPK 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR- 178 G+T F + + +RALEGE++RTI+ + + A+V+I +P F + P AS++++ Sbjct: 119 MGITQFQENVNYLRALEGELSRTIRQLDPVRDAKVNIALPKESIFVREEDEPKASIILKL 178 Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIV 234 + +A+ LV+ AVP L +VTV+D+ G++L+ E + K++ I Sbjct: 179 WPGKDLTKEQVKAVVFLVSHAVPKLKPENVTVVDNRGRVLSDILEEDTVTAVSDKNVEIK 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ +IE N+ L+ LG E+ Q ++ +YDPD S R ++ Sbjct: 239 RKLERQIEKNVQTMLSRALGEGKVVVRATVEIETGKLQQQDEIYDPDRTAVVSERKIQEK 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 ++ Q N+P V D ++ ++K+ NY + + T + + Sbjct: 299 EKEFKQQEALPPGTPTNVPPVIDETGQG-SIIKQKERKDTTKNYNVTKSLVNTQKPIFNI 357 Query: 355 ERLSIAVVVNKGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++S+ V+++ + + L +V +A G + +RGD +T+ S Sbjct: 358 KKISVGVLIDGKYEKVKDEEGNEKYRFIPRSEEELKVYESLVKSAIGYDPKRGDQVTVVS 417 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + I LV + L + K Sbjct: 418 VPFEAKPEVAVAEERKIED----------IILLVAIGILGLAVLAVAAIILVKVLKGKKK 467 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 E I + A+ M + + + Sbjct: 468 VPEAVPPGISPEAAAAYAIHEKEMEEFQL-----------------------EREPIYRK 504 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L+ + + N E A+++ KW + E Sbjct: 505 LVDLAQENPELIAELITKWMKEE 527 >gi|294084401|ref|YP_003551159.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum IMCC1322] gi|292663974|gb|ADE39075.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum IMCC1322] Length = 572 Score = 330 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 119/559 (21%), Positives = 221/559 (39%), Gaps = 23/559 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 +L + TS R + ++ + + F+ +P LY L S+ R+ A Sbjct: 25 MLSTVRRFTSDPAVRRALPTFAAIIFAVAGLFVFVFMQAPQRTTLYASLPESEKARVVEA 84 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + ++ + + VP+S +A++ LAAQGLP +S GY + G + + Sbjct: 85 LINSGVEVTLDPTTGDVLVPTSDFHQAKMSLAAQGLP-TSVPDGYASVGDIP-MGSSRSV 142 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY- 185 + + ++ E E+AR+I I G+V+ARVH+ +P+ F + PTASV I+ N Sbjct: 143 ENVRLKQSQEIELARSIGEIDGVVSARVHLAIPEKSVFARNATPPTASVFIQMNNGRTLG 202 Query: 186 -KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242 + EA+ HLV+++VP++ DVTV+D G LL+ +M + L +++ Sbjct: 203 SQQVEAVVHLVSSSVPSMAKTDVTVVDQFGALLSNPTNDMASLLSDSQLQHRIRLENIYR 262 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + ++ +G N S + +++ + E DPD RS + S D + Sbjct: 263 NRVISLVSPIVGAGNVTSQINIDIDYTRSETTEERVDPDGNALRSEQKSVDMKSDAN--A 320 Query: 303 ESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +T E NYE++ T + ++ Sbjct: 321 RGIPGATANRPPLQSEIDSVQADDAGAKGSVSTQSSNEVRNYEVSRTVSTTQSPSTRIVG 380 Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 + AV V +K + G LAEI K+V+ A GI++ RGD +T++S F+ Sbjct: 381 IQAAVLVRDKEVVNPETGLMEVVPFTPEKLAEIEKLVANAIGIDAERGDKLTVSSSAFV- 439 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 S V+ ++ + L+ +V + L + A Sbjct: 440 -----SAIEGVTKAWYDMEWAINLMKQGMTLLIMGVVVLGVIRPLIGRIMVPAAVGAPGE 494 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L A+ + + S + N+Y K + + ++ Sbjct: 495 AMVSLDDDLGGEAIEVQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDKVAV--IRMIV 552 Query: 536 EINEERFAKILRKWARSEI 554 R + + + +I Sbjct: 553 GDEAGRVSNVFKSMMERDI 571 >gi|303248346|ref|ZP_07334607.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ] gi|302490254|gb|EFL50168.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ] Length = 546 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 115/564 (20%), Positives = 225/564 (39%), Gaps = 36/564 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + ++ + ++L + + F+ +F+N P LY +L D R Sbjct: 5 FKQSFEKLIQYWSNRTAAQRILLGGLAASTVAAFLVMIYFLNQPEMRVLYTRLAPEDAAR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + + + DNG++I VP+ V + R+ +A +GL G+ELFD++ G Sbjct: 65 VVEQLKASKTPYELRDNGATIMVPAESVYEQRLKIAGEGLMH-GQGVGFELFDQL-KVGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180 T F+Q I RAL+GE+ARTI + ARVH+V+P F + + +ASV++ Sbjct: 123 TDFVQRINYTRALQGELARTITEFPQVEKARVHLVLPQKSLFIEEQKQASASVVLTLKRG 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237 K + I +LV+ AV L +T+ D+TG+ L + + + Sbjct: 183 QKLDAKQLQGIVNLVSMAVEGLTPEHITITDTTGQSLYQPQGDSGLAGMSNSQFEFKNTY 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR- 296 + +E I + L +G +L+ + IR+ +YDP+ V RS + +++ Sbjct: 243 ESNLENRIEQLLTPIVGPGRSIVKANVDLDFSQRTIRKELYDPNVTVVRSEQKNEETTSG 302 Query: 297 ------SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + + S + + ++ +N+EIN + Sbjct: 303 TAAVDASGQTVTPRGGGAAVPNNNFQGSGYSGTESTQKSSRQNSTTNFEINKEEQNVVTP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 L+R SIAV+V+ + + + + L I ++V+ A G++ RGD I ++ Sbjct: 363 VGDLKRQSIAVIVDGTYVKDKDKETYTFVPRKAEELERIKQVVARAAGLDPSRGDEIQVS 422 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 S +F + ++ + ++ R +N L+ + + L + + Sbjct: 423 SFEFGAPDGSDQPSLVQTMLEYAQRLGKPFLNGLLLFLFLI----LVVRPVVLALIRPRV 478 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E+ L A+ L+ + + + L Sbjct: 479 TEEEIETLERLPEGEARLALAEPEESEGLGMLEGGKELELAKNLAL-------------- 524 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + E N E+ +L+ W + E Sbjct: 525 ---QLFEENMEQSMTLLKAWLKQE 545 >gi|99082787|ref|YP_614941.1| flagellar MS-ring protein [Ruegeria sp. TM1040] gi|99039067|gb|ABF65679.1| Flagellar M-ring protein [Ruegeria sp. TM1040] Length = 571 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 142/570 (24%), Positives = 229/570 (40%), Gaps = 30/570 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + Q L + + ++ L I F N P LY LE S + Sbjct: 13 NVQQIKNVWAGLDKRKRMMAIGATLAVIFTFFLMSLVANKPSMQLLYAGLESSSAGDVVS 72 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL ++ +D+ + G SI VPSS + R+ LA+QGLP++ GYEL D ++ FG TS Sbjct: 73 ALEQSGVDYEVR--GGSIYVPSSKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQ 129 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 M + RA EGE+ARTI + + ARVHI F++ + + +P Sbjct: 130 MFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIEPTASVSVTPMGSPITP 189 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 A AIR LVA+AV L + +V V+D+ G L+ + E + + Sbjct: 190 SQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAG----TDDRSQTLRERV 245 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + + A +G N + E DT+ IRE DP S+V S + + S+ Sbjct: 246 LRLVEARVGQGNAVVEISVETITDTESIREKRVDPQSRVAISTDVEERIDSSQNQ--AGE 303 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VTV N+P S +T+ E+ NYEI+ ++RL++AV++N Sbjct: 304 VTVASNIPDGDA--GNGEGSKASTNATRERVNYEISETEKEIVRGPGAIKRLTVAVLING 361 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 G +A + + + L + +++SAA G ++ RGD IT+ SMD + V Sbjct: 362 VTTETAEGEAAFEPRPEEELEALRELISAAVGFDAERGDVITLKSMDLPNVE-PLGTEVT 420 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKGEVGGKSILSPP 483 S D L ++I + L++ + + ++ + L Sbjct: 421 SSVFDNLYFDVMSIIQMAALAIVALILGLFVVRPILAGNGASVQALPSPDGVAAGGLPEL 480 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI----------------NSYVSKQS 527 P S G M N ++ + + + +S Sbjct: 481 PDMSGGDAGFMTNPDLGANIALDGEIDGGDGGFQPLGDLPGMGDGLAGFGGGGGGMSDDP 540 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557 RL MI +E +ILR W E+R Sbjct: 541 VDRLRSMIGERQEETVQILRGWLEENNEER 570 >gi|146278778|ref|YP_001168937.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17025] gi|145557019|gb|ABP71632.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] Length = 543 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 127/549 (23%), Positives = 224/549 (40%), Gaps = 21/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L R I+ + F N P LY L+ + + A Sbjct: 14 VQNLISIWNDLDGRRRAIVVGATAAMFLAIFGLSQFANKPRMALLYAGLQGAVAGEVVAA 73 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + G SI V +S + R+ LA +GLP++ +GYEL D ++ FG TS M Sbjct: 74 LEAQGVAYEVQ--GDSIHVDASRRDELRMKLAGEGLPATG-TAGYELLDGLSGFGTTSQM 130 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + +RA EGE+ARTI + + AARVHI F++ + + + + Sbjct: 131 FDAAYLRAKEGELARTILASPQVKAARVHIAPAAAQLFQRERRPTASVTVTTSGGNLTME 190 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A A +HL+A+AV + DV+V+D+ G L+ A + I G E+ N+ Sbjct: 191 QARAFKHLIASAVAGMQPEDVSVIDTVGGLIRAGDTGDGIAGT----AGTRAAELRRNVE 246 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G V ++ ++ I E +DP +V S L + S P+ V Sbjct: 247 RLLEARVGPGRAVVEVSLDVETASETIVEKTFDPKGRVPISSELQEKTSSSTQPAPD--V 304 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P +S + + E +N+E++ + RL++AV+V+ Sbjct: 305 TVASNLPEGDAAGGSAGKSN--SSETRETTNFEVSQTQRELVRQPGTVRRLTVAVLVDGV 362 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 R+ G+ Q + + LA + ++V AA G++ RGD +T+ S+ F + Sbjct: 363 RMAGEDGQLTWQPRPEEELAVLRELVGAAVGLDESRGDRLTLRSLIFETPPDLGTLAEAG 422 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + S ++I V + L++ + + L D L + Sbjct: 423 MLGRLGSFDLMSLIQIAVLALVALVLGLFVVRPV--LTARRDPALSSATPPLALPGYGGT 480 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + TG + + + D+ + ++ RL +IE + +IL Sbjct: 481 NEALTGEIDD--------STDLPDFPMVASAPLDFDDEPDPVARLRRLIEERQAESVEIL 532 Query: 547 RKWARSEIE 555 R W + E Sbjct: 533 RGWMEPQRE 541 >gi|254510010|ref|ZP_05122077.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11] gi|221533721|gb|EEE36709.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11] Length = 530 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 134/549 (24%), Positives = 232/549 (42%), Gaps = 21/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q SL R + +I+A + + + +A V +P LY LE I A Sbjct: 1 MQQIGTVWASLDRRKQIIVAGAVALVFLGVLAMSRIVTAPSMTLLYAGLESGAAGDIVRA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + I G SI VP + + R+ LA++G+P++ N GYEL D ++ FG TS M Sbjct: 61 LDQRGVAYEIR--GGSIYVPGAQRDELRLTLASEGMPANG-NRGYELLDSLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + ARVHI F++ A + ++ + Sbjct: 118 FDAAYWRAKEGELARTIVGSPYVSQARVHIANGSANPFQRSVAPTASVYLVPSGAQITGD 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+AIR LVA+A+ L +VTV+DS G ++ A E Q + + Sbjct: 178 QAKAIRFLVASAISGLAPENVTVVDSNGAVIGAQETAAAADTADDKARQ-----LREKVL 232 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G N V + T+ IRE +DP +V S + + + + + V Sbjct: 233 RLVEARVGTGNAVVEVSVDTVTKTESIRERRFDPKGRVAISTDVEERSDNTRNQSSD--V 290 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P + N + E+ NYE++ + ++RL++AV+VN Sbjct: 291 TVASNLPDGDG--AGGDETNSNATQTRERVNYEVSETELEVHRAPGAIKRLTVAVLVNGA 348 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 R+ + G + + L + ++V++A G ++ RGD IT+ S+D + Sbjct: 349 RMVDGNGIESFEPMPQPELDALEELVASAVGFDADRGDVITLKSLDLPAVE-PQGTLASA 407 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S + ++I V + +L++ + + A P ++ Sbjct: 408 SIWQRIHLDAMSLIQMAVLALVSLVLGLFVIRPILTKSAAAPALLPAANAPEADVAPYLT 467 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + TG N D ++ + I + + + RL MI +E +IL Sbjct: 468 GEIATGDAGNFTPLPDPGQSNVPA--------IANAPGEDAVDRLRAMIGDKQEETVEIL 519 Query: 547 RKWARSEIE 555 R W E Sbjct: 520 RSWLEEGEE 528 >gi|163744330|ref|ZP_02151690.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45] gi|161381148|gb|EDQ05557.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45] Length = 567 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 241/568 (42%), Gaps = 21/568 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q ++ LG R+ +L + L + +P Y +Y +L +++ Sbjct: 1 MNQIVENLKDLGPKRLALLGGIGLAITAAVFIGARTILAPTYVPVYSQLSPGTASQMMQT 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A + +S NG +ISV + + +AR+ LA GLP G+E+FD ++ G+ SFM Sbjct: 61 LEQAGLTVDLSRNGDTISVAENDIARARMALADAGLPGEGVP-GWEIFDNMSGMGMNSFM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSV 184 Q++ R+RALEGE+AR+IQ+ISGI AARVH+V+P+ +F + A + SV++R A Sbjct: 120 QKVNRLRALEGELARSIQTISGIKAARVHLVLPERAAFSRSRAEASGSVIVRSQANASMT 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 A+AI+ LVA+AV +L+ +VTVL ++G+ + A + + I+ ++ Sbjct: 180 RSQAQAIQALVASAVADLEAQNVTVLSASGETILAKDDGGSSDFSLQGQRSMIEEQLAQK 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L A +G N R V +L + + +DP +V RSI Sbjct: 240 VESILNARVGPGNARVRVSVDLTTEREVRVSRTFDPAQQVARSIETRVRNSNETD-PATG 298 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V V N+P + +E NYEI + + +ER+S+AV+VN Sbjct: 299 TVDVANNIPDELRDDAGGGAGQSTRSENDEIINYEIGSVQSEMVREPGDIERISVAVLVN 358 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 T G + + + ++++VS A G + RGD + + S+ FL+ S Sbjct: 359 GSYGTLPDGSEGYIERSEEEMQRLSQLVSTAIGFDQNRGDQVQVDSLQFLDFDSEFSNPG 418 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 +L+ + T++ +L L ++ LG LR + + + G + + Sbjct: 419 GRGLGAVLADNAMTILRSLFALALVAIIMLLGARPLRMVLDATLPQPALAGAGADAALLG 478 Query: 485 ISSAVTTGLMPNDNIALDSS-----------------NQDIFSHSRNLQSRINSYVSKQS 527 + + D + + V Sbjct: 479 GPEEDSAPKALTGGTQNEPPQNRLPTPAGAQTGAVLGPMDEMPRDMVQLASVEGAVHHSK 538 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 + + E N E ++L W E Sbjct: 539 LRAVAELAEDNAEDALRVLGDWLAEGDE 566 >gi|332305659|ref|YP_004433510.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172988|gb|AEE22242.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5] Length = 568 Score = 329 bits (842), Expect = 9e-88, Method: Composition-based stats. Identities = 98/562 (17%), Positives = 220/562 (39%), Gaps = 31/562 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F S S R L+L +++ + + + + P Y L K++ ++ Sbjct: 26 EQKSGFMDSLGSTDMVRQLMLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + ID+R+ G+++ V S ++ +A QGL S + G ++ + FG++ Sbjct: 85 DYFDQNQIDYRL--EGNTVYVSSDQYQDIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++++ A E ++ART++ +S + A+V + +P F + + +A+V+I A Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVITARRGAI 201 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHE 240 + +I +VA+AV L+ VTV DS G+LL + + + + + E Sbjct: 202 MGSEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRESE 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS +D S Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVED--NSVGG 319 Query: 301 QPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P + ++ + KEE NYE++T T + Sbjct: 320 VLGGIPGALTNQPPLDSNIPEEAIASNTQTTMPGRNHKEETRNYELDTTISHTKQQTGVI 379 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS++V ++ T G + + + L +I +++ G + RGD++ + S+ F Sbjct: 380 RRLSVSVALDHIATTGEDGTTTFSPRSQAELLDIRRLLQGGLGFDVTRGDSLEVVSIPFS 439 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKG 472 V + F ++ ++ + +++ + + R + K Sbjct: 440 REGEVALEEVPIWEDPK----FMPILKLVIGGLVIIVLLLAVVRPMLRKLIYPEETTSKD 495 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E L + ++ + + + + + + + + + Sbjct: 496 EFDADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLP---------DLHKDEDVLKAVR 546 Query: 533 HMIEINEERFAKILRKWARSEI 554 ++ E +++++ W + Sbjct: 547 ALVANEPELSSQVVKNWLLQDE 568 >gi|268678860|ref|YP_003303291.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM 6946] gi|268616891|gb|ACZ11256.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM 6946] Length = 574 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 134/572 (23%), Positives = 234/572 (40%), Gaps = 26/572 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M L Q +L + ++ A I+V I + + N+ Y L+ K Sbjct: 1 MDFKTLLNQIATLIQNLTLRQKIVSAVSIVVLIGFLVFLMLYKNTSSSSMSGYTILFEKT 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D I L + + +++ D G +I+VP+ MV K RI +AA G+P +S G+E+FD Sbjct: 61 TAGDSALIIQQLEKDKVPYKVLDEG-TIAVPNDMVHKQRIAIAALGIPKNS-KVGFEIFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K FG T F Q+I +RALEGE+ARTI+S+ I A VHI +P F + TAS+ Sbjct: 119 KTE-FGATDFEQKIKYIRALEGELARTIESLGPIANASVHIAIPKESVFAQKQVPATASI 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKS 230 ++ K IR+LVAA++ NL +V++++ G+ L E ++ Sbjct: 178 VLNIRQGMALSVKQIVGIRNLVAASIANLPAENVSIVNQDGEPLGDEESNLFQGELVKSQ 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + +H IE I LA +G VD + V + + Q VYDP+S Sbjct: 238 IRYKKEFEHNIEQKIINVLAPVIGGVDKVNAKVTIDFDFSQQDYVSEVYDPNSVPRSEQS 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + E N+ V + K +NYEI+ K + + Sbjct: 298 VEEKREGKEPQDVGGVPGAISNIGPVQGLESTKKGET--YQKSSTTTNYEISKKVVNSKD 355 Query: 350 DNYKLERLSIAVVVN--KGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRG 403 + K++RL+ AVVV+ + G ++ + I +V G N+ RG Sbjct: 356 EFAKIKRLTAAVVVDGTYKYGLDADGNKKNELEYFPLSKEQMDAIRDVVRQTVGYNATRG 415 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D +T+++++F + SFM+ + + + L +++ L+ + Sbjct: 416 DEVTVSNLEFKPLSSDGTRVPPKSFMEEVLSYLIKLTPLLKYILVAGLLFIFYKKVILPF 475 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K + + +V L ++ + + Sbjct: 476 SQKMVETKLDDFEDEVEPIKLEDESVEDTL----EKFKEARKKVEDQLGIGQDFNEEALK 531 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 +L H+ + E FA I++ R+E E Sbjct: 532 YDVLLEKLKHIADEKSEDFASIIQSMIRNEGE 563 >gi|114705807|ref|ZP_01438710.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506] gi|114538653|gb|EAU41774.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506] Length = 551 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 199/553 (35%), Positives = 310/553 (56%), Gaps = 13/553 (2%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q Q + + LG ++ L V L+ ++L +F++ + LY L+ DV RI Sbjct: 8 QAQQIVSNLSQLGPKKLGALGIVGLLVVVLVGLGSYFLSRADMETLYSGLDRQDVTRIGA 67 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL+EA I F ++ G ++ P S G+AR+ LA +GLP S N+GYELFD + S GLTSF Sbjct: 68 ALTEAGIPFDVTAEGDAVQTPFSQTGEARMLLAEKGLPRS-ENAGYELFDNIGSIGLTSF 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 MQE+TRVRALEGEIARTIQ+++ I AARVH+V+ D GSFR+ +P+ASV+IR + Sbjct: 127 MQEVTRVRALEGEIARTIQTLANIRAARVHVVLADEGSFRRERRKPSASVVIRTDGSEDF 186 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMN 244 SA AIR LVAAA+P + +VTVL+S G LL + E + K I + + +E + Sbjct: 187 GSASAIRSLVAAAIPGMTPQEVTVLNSDGTLLASGEEGVSSAPSKLFGIEKIMSGSVEES 246 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + LA +LGV NF+++V A LN D QQI E ++DP+S+VERS+R K+ +S+ + Sbjct: 247 IRRTLAPYLGVGNFQTSVTASLNTDRQQISERIFDPESRVERSVRSMKEMDQSQNTTQNE 306 Query: 305 AVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 AV +EQ++ + S + +++EE +NYEIN K+I TT + Y++E+LSIAVV Sbjct: 307 AVGIEQDIQAADEVEGAPGGESSSDEKERREELTNYEINEKTIQTTSEGYEVEKLSIAVV 366 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N+ RL +G +A ID+ +AEI +V++A+G + RGD + +T++DF++ Sbjct: 367 INRQRLAAAIGENATDTDIDARIAEIESLVASASGYSEARGDQLKVTAVDFVDAAGSLEP 426 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 F ++ R T+INAL LV +LV + GL R + + E + + Sbjct: 427 IPGPGFSEMFMRQSGTLINALTILVVAVLVIWFGLKPAIRALAAPEPAESEADNDNSIET 486 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + + + S + RL +++I+E + Sbjct: 487 LQRVGEGMESGSVGSLAPANGTQGFVEDLSGAAR---------SPQARLEALVDIDENQA 537 Query: 543 AKILRKWARSEIE 555 A +L++W + + Sbjct: 538 ANVLKQWLKQKEA 550 >gi|114777411|ref|ZP_01452408.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1] gi|114552193|gb|EAU54695.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1] Length = 547 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 128/543 (23%), Positives = 237/543 (43%), Gaps = 45/543 (8%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 L + R L+L + + F+ + + Y +Y +E D + L + +I +R+ Sbjct: 38 LVKYRRLMLFIAASLMLAGFIGLVLWSSEKPYRAVYAGMEEKDAATVVEMLQKEHIPYRL 97 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G ++ VP V + R+ LA QG+ SGYELFDK N FGL+ F ++I RA++ Sbjct: 98 E-GGGTVMVPEDQVYEVRMKLAGQGINPRG-TSGYELFDKSNEFGLSDFTRKINLQRAMQ 155 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHL 194 GE+ARTI+ + + AARVH+V+P +F + TASVM++ + AI++L Sbjct: 156 GELARTIEVMPQVSAARVHLVLPKESAFADRDRKATASVMLQLSGSQRLSKNTVLAIQNL 215 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAF 252 VA++V +++ DVTV+D++G LL+++E E ++ +E + L Sbjct: 216 VASSVAEMNVADVTVVDASGTLLSSSEKETPSSEGQTLQEYQSKLEQRLEQRLTGMLEQI 275 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +G V A+++ + + Y+PD +V RS + ++ S +S + N Sbjct: 276 VGEGQSVVRVSADIDREFIDQQSTRYNPDEQVLRSRKSIVESHTSSSSGAMGVPGLASNT 335 Query: 313 PHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 P + + + + E+ +NYEI++ S +++LS+A +V Sbjct: 336 PGSNPATSNKTAAAPSQPGNTAKRNEDVNNYEISSTSEHRVVPFGNIKKLSVAAIVGGHM 395 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 T+ G + + LAEI K+V +A G + RGD++T+ SM ++ Sbjct: 396 QTDAKGVQTFVPRSRAELAEIQKLVESAMGYDEDRGDSVTVQSMPLMDISSSADTAALDK 455 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + + + + +L+ + L L + G + ++P +S Sbjct: 456 AEARV--FYMKAARYGIAALALMLLGWFVLRPLAKRIQDSTPHDQTAGKPAPVTPLHLSD 513 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 ++Y + ++ IE+ ER K+LR Sbjct: 514 --------------------------------STYKRLANMEQVRSSIELQPERATKVLR 541 Query: 548 KWA 550 +W Sbjct: 542 EWV 544 >gi|161485650|ref|NP_419721.2| flagellar MS-ring protein [Caulobacter crescentus CB15] gi|221233887|ref|YP_002516323.1| flagellar MS-ring protein [Caulobacter crescentus NA1000] gi|220963059|gb|ACL94415.1| flagellar M-ring protein FliF [Caulobacter crescentus NA1000] Length = 554 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 130/555 (23%), Positives = 237/555 (42%), Gaps = 12/555 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F S G R+ + V + + +A F+ + LY L++ + + ++ A Sbjct: 1 MESFLGSIRQFGVGRLAAMLGVGAGVVAVLVALVMFMGKEPSELLYSNLDLKEASEVTQA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A I + +GS+I VP V AR+ +A +GL SS S GYE+FD N+ G T F+ Sbjct: 61 LDQAGIKYETKGDGSTIMVPRDKVASARLMVAGKGLVSSGS-IGYEIFDTNNALGQTDFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185 Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P F + +P+A+V I + Sbjct: 120 QQLNRQRALQGELERTIKAMQGVNSVRVHLVLPKRQLFEEDAEQPSAAVTIGVGSREPSS 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 AI++LV+++VPN+ V V+D GK L+A E + ++ I + Sbjct: 180 DMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSAPSDESLAGKMAQDRKSEVEARIAKTV 239 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + LG R V AEL+++ +E +DPD +V RS ++ + + + + Sbjct: 240 KDMIEGVLGPGKARVNVTAELDLNRVTTQEERFDPDGQVIRSESTTEASSQENKNDDNAG 299 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VT N+P T + + +NYEI+ T + ++++++AV ++ Sbjct: 300 VTAAANVPGGQGANGFQQLGSR-TGQNDAVTNYEISKSVTTTVQEPGTIKKIAVAVAIDG 358 Query: 366 GRL-TEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 G+ A + + +I ++V A G ++ RGD + +T++ F + + Sbjct: 359 VSAPMAADGKPGAYTPRTAQEIQQIEELVKTAVGFDAERGDQVRVTNIKFPQPEDQGLE- 417 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 Q V V LL+ + + + + + G S P Sbjct: 418 EQGLLAGFDKNDIMRAAELGVLAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPPV 477 Query: 484 PISSAVTTGLMPN------DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + G + R ++I V S R+ +E Sbjct: 478 TRLVTLADGTQQQVVVDQSGEPIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVEK 537 Query: 538 NEERFAKILRKWARS 552 + + ILR W Sbjct: 538 HPDESVAILRNWLHE 552 >gi|109899352|ref|YP_662607.1| flagellar MS-ring protein [Pseudoalteromonas atlantica T6c] gi|109701633|gb|ABG41553.1| flagellar M-ring protein FliF [Pseudoalteromonas atlantica T6c] Length = 568 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 92/562 (16%), Positives = 215/562 (38%), Gaps = 31/562 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F S S R L L +++ + + + + P Y L K++ ++ Sbjct: 26 EQKSGFMDSLGSTDMVRQLTLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + +D+R+ G+++ V + ++ +A QGL S + G ++ + FG++ Sbjct: 85 DYFDQNQVDYRL--EGNTVYVSADQYQNIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINP 182 ++++ A E ++ART++ +S + A+V + +P F + + +A+V++ Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVVTSRRGAI 201 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHE 240 + +I +VA+AV L+ VTV DS G+LL + + + + + E Sbjct: 202 MGNEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRETE 261 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS ++ S Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEE--NSVGG 319 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDK------KEEQSNYEINTKSIATTHDNYKL 354 N P + + KEE NYE++T T + Sbjct: 320 MLGGIPGALTNQPPLDSNIPEEASASNTQTTVPGRNHKEETRNYELDTTISHTKQQTGVI 379 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS++V ++ G S + + L +I +++ G + RGD++ + S+ F Sbjct: 380 RRLSVSVALDHVSTVGEDGTSTLVPRSQAELLDIRRLLQGGIGFDVTRGDSLEVVSIPFS 439 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKG 472 + + F ++ ++ + +++ + + R + K Sbjct: 440 REGEVALEELPIWEDPK----FMPILKLVIGGLVIIVLLLAVVRPMLRKLIYPEETTSKD 495 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E L + ++ + + + + + + + + + Sbjct: 496 EFDADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLP---------DLHKDEDVLKAVR 546 Query: 533 HMIEINEERFAKILRKWARSEI 554 ++ E +++++ W + Sbjct: 547 ALVANEPELSSQVVKNWLLQDE 568 >gi|157165014|ref|YP_001466462.1| flagellar MS-ring protein [Campylobacter concisus 13826] gi|112801613|gb|EAT98957.1| flagellar M-ring protein FliF [Campylobacter concisus 13826] Length = 565 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 119/570 (20%), Positives = 228/570 (40%), Gaps = 27/570 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56 M L Q + L + ++ S I++ + + + + Y L+ + Sbjct: 1 MDFKALLHQISQIYQKLSLKQKIVAGSSIVLVVAFLVFLTLYKSKSDSFVGYSVLFENIS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 SD I L++ I +++++ G +I VP+S V K RI +A G+P S G+E+FDK Sbjct: 61 PSDSALIVDQLNKDGIKYKLANEG-TILVPTSDVYKERIAVATLGIPKES-KIGFEIFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG T Q + RALEGE+ARTI+S+S I A V I +P F + A PTAS++ Sbjct: 119 -QEFGATDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQALPTASIV 177 Query: 177 IRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS 232 + I++LVAA+V NL +V +++ G L + + + + + + Sbjct: 178 VELKPGVSLNAKQIFGIKNLVAASVTNLSTENVKIVNQDGVALGDEDGEFDSDAIAQQIR 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + ++ E I LA + G D + V + + D + + VYDP++ V + Sbjct: 238 YKREFENNYEQKIVNVLAPIVGGADKVVAKVNIDFDFDKKDTKSEVYDPNNVVRSESNIE 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + Q S ++ N+ V E +K +Q+NYEI+ K Sbjct: 298 EKRQGSAPNEVGGVPGAVSNIGPVQGLDDS--TLKEQYNKSSQQTNYEISKKVTNVKGQF 355 Query: 352 YKLERLSIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + R+S AVV++ ++ G I ++ + G N RGD Sbjct: 356 ASINRVSAAVVIDGLYQSKKDKDGKPTGELEFAPLTKEQRESITNLIKQSIGYNQNRGDE 415 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 +++ + +F + ++G FM + + + L ++ LL+ + Sbjct: 416 VSLDNFEFKTGKDVSTGEKMDGFM---NNYVMPFLPLLKYIFAALLLYIFYKKVIVPFMQ 472 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + E ++ I + A + + + + Sbjct: 473 KMLEETKEEEEQAQDDLEEI-EMDAEDTLEKFKAARKKVEEQLGLSGEFNEDEL---KYD 528 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ ++ E + +L+ +++ E Sbjct: 529 VLLEKMKIVVTERSEEISNLLQDMVKNDSE 558 >gi|295690740|ref|YP_003594433.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756] gi|295432643|gb|ADG11815.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756] Length = 532 Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats. Identities = 126/519 (24%), Positives = 221/519 (42%), Gaps = 10/519 (1%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ + LY L++ + + ++ ALS+A I F +GS+I VP V AR+ +A Sbjct: 16 IMFMGKEPNELLYSNLDLKEASEVTQALSQAGIKFETKGDGSTIMVPRDKVASARLMVAG 75 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +GL SS S GYE+FD N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P Sbjct: 76 KGLVSSGS-IGYEIFDGGNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLP 134 Query: 160 DMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + +P+A+V I + AI++LV++AVPN+ V V+D GK L+ Sbjct: 135 KRQLFEEDSEQPSAAVTIGVGSREPSTDMVHAIQNLVSSAVPNMKAEKVAVIDQHGKTLS 194 Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 A E ++ + I + + LG R V AEL+++ +E + Sbjct: 195 APSDESLAGKEAQDRKVEAEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEERF 254 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 DPD +V RS ++ + ++ S T N+P S + E +NY Sbjct: 255 DPDGQVVRSESTNESNSQENKNEDNSGATATANVPGQGAGGFQQLGSRAGAN--ESVTNY 312 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAAT 396 EI+ T + ++++++AV ++ A + + +I ++V A Sbjct: 313 EISKSVKTTVQEPGTIKKVAVAVAIDGVTAPPGKDGKPGAYTPRSAQEIQQIEELVKTAV 372 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G ++ RGD + +T++ F Q V + +L+ Sbjct: 373 GFDAARGDQVKVTNIKF-PQAEDQGLEKQGLLSGFDKNDIMRAAELGVLGIVAILILLFA 431 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSR 513 + + + + G I+ + T L + R Sbjct: 432 VRPFIKNLSEPNVVAALPSGSGQPVTRMITLSDGTQQQVVVDESGEPLAIAGPVSDIDQR 491 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++I V S R+ +E + E ILR W Sbjct: 492 IDIAKIEGQVKASSIKRVSEFVEKHPEESVAILRNWLHE 530 >gi|95929849|ref|ZP_01312590.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684] gi|95134145|gb|EAT15803.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684] Length = 521 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 128/553 (23%), Positives = 229/553 (41%), Gaps = 46/553 (8%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F + +R + L +V L + LF Y L+ L +D + I L Sbjct: 8 NMFATIKGWPLSRKISLIAVTLFSLTLFALIIMQARHTDYQLLFANLSENDASSIVTWLK 67 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 E + + + G S+ VP+ V + R+ LA GLP G+E+FDK S G+T F+Q+ Sbjct: 68 EQKVPYELRSGGQSVYVPADRVYETRLDLAGAGLPQGGG-VGFEIFDK-QSLGITDFVQK 125 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186 + +RA++GE++RT+ S+S + AARVH+ +P F+ R TAS++++ K Sbjct: 126 VNYLRAMQGELSRTVASLSPVSAARVHLALPQKRLFKSEQQRVTASIIVKLAPGRTLKEA 185 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEM 243 + I +LVA +V LD VTV+D+ GK+L+ E + L +A++ ++E Sbjct: 186 QVQGIVNLVAGSVEGLDSDYVTVVDAAGKVLSKKPDEGLSGPMTPGMLEYQRAVERQMES 245 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 L LG+ N V A L+ + E +YDP S V RS +L + + S T Sbjct: 246 RAQAMLDRALGMANSLVKVTAVLDFAQVEKLEELYDPKSAVPRSEQLQEQKEGSSTVG-G 304 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V+ N+ + + ++ E +NYEI+ T ++ LS++V+V Sbjct: 305 GVPGVQANLGPGVNSAGGGGSNSTSSA---ETTNYEISKVVNRTVAPVGTIKHLSVSVLV 361 Query: 364 NKGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 A + + L I K+V +A GI+ RGD + + SM F + Sbjct: 362 ADKMTDGEEDGAEPALTPRSEQELRTIEKMVQSALGIDKTRGDQLNVVSMPFADEFYEQP 421 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + S D L + ++ ++ +G L++ + + + + + K + Sbjct: 422 QLPEPSVTDQL-YVYMPLLKYVLAGLGALVMYLMLVRPALKTLKSEATVQHFKTVKELEE 480 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + T L + + + + Sbjct: 481 EMAAGRSATVELDATEQMRQNILKAEHSP------------------------------- 509 Query: 542 FAKILRKWARSEI 554 ++++R W E Sbjct: 510 -SQVIRTWMTDEE 521 >gi|90415352|ref|ZP_01223286.1| flagellar protein [marine gamma proteobacterium HTCC2207] gi|90332675|gb|EAS47845.1| flagellar protein [marine gamma proteobacterium HTCC2207] Length = 599 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 121/559 (21%), Positives = 208/559 (37%), Gaps = 26/559 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 R + A + + + +F+ A ++ P Y +Y L SD AL+ A Sbjct: 47 LSQIMQQPAVRKAMPAIIAFLSVAVFLIAYSWMQDPVYRTVYPGLSESDRQAAFEALAGA 106 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + RI + + VP S +ARI LAA+GLP + G S + FM+++ Sbjct: 107 DFKARIDSSTGELKVPDSRYHEARIFLAARGLPQEGTTGGISGLSDEASMTSSQFMEQVR 166 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188 V A+E E+AR+I I+ I +ARVH+ P F + ASV++ Sbjct: 167 YVSAMEQELARSITQINTIRSARVHLASPKQSVFVRNRTPAKASVVVSPYPGRLVSRSQV 226 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNIN 246 EAI H+V+++VP L DV V+D GKLLT + + Q ++ I+ Sbjct: 227 EAITHMVSSSVPYLAAEDVVVVDQRGKLLTDANNFASMQLNSAQMEHKQRLEETYRNRID 286 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +G+ N R+ V +++ ++ YD ++ ++ + S E Sbjct: 287 ALLMPVVGMGNVRAEVDIQVDYTEEESTYEEYDGNNNGPKARSEVLSLDQDAVSSAEGIP 346 Query: 307 TVEQNMPHVSDR-------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N ++ T NYE++ +ER+S+ Sbjct: 347 GATTNTVPLNATAILNGQLDGSAEDGGLRTSSSTTTRNYEMDRTVRHVKRQGGSVERISV 406 Query: 360 AVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 AVV+N+ E +G + L + +V G + RGD +TI S F Sbjct: 407 AVVINEPVAQEGGVNEAGESKGFSELELERFSDLVKGVVGFDGERGDVVTIVSATFETPV 466 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 F S DI VI+ + L ++ F+ L +R + E Sbjct: 467 PFKS--------DIAWYENGQVISGIKTLGAAIMFLFILLSVVRPVIKAYLPAVDENLID 518 Query: 478 SIL----SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL-L 532 + M + D + S +++ + + L Sbjct: 519 ETQVSSKDGELNDEEMRLIEMRDGESLEDIKAKLKPKKSTISAEMLDTANTYDDKVALVR 578 Query: 533 HMIEINEERFAKILRKWAR 551 ++ + R A +L+K R Sbjct: 579 LLVAEDSGRVANVLKKMIR 597 >gi|157959913|ref|YP_001499947.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345] gi|157844913|gb|ABV85412.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345] Length = 566 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 112/569 (19%), Positives = 214/569 (37%), Gaps = 34/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + + L + R R +++ +V+ + + + S Y LY E + + Sbjct: 17 VNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSASQGYRPLYGNQEGVETS 76 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I L I +RI N I V +G AR+ LAA+G+ + SG E + N G Sbjct: 77 QIIEVLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGV-KAKVPSGMESLENSN-IG 134 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM++ +LEGE++RTI ++ + ARVH+ +P F + + + + Sbjct: 135 TSQFMEQAKYRYSLEGELSRTIMALKAVKTARVHLAIPKKTLFIRQQPELPTASVMLELY 194 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIV 234 A + + E+I +LVA +V + V V+D G L++ N+ + L Sbjct: 195 AGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVNKDITQARDRQLKYT 254 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 Q ++ + + L LG D+F V A +N + + + DP + + + + Sbjct: 255 QELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDP---LAVVTKENLTS 311 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + N P ++ R N+ +E ++ T + +L Sbjct: 312 NETNSDMALGIPGALSNQPPAAEADESNARRNLNS---QESRQFDTGRSVRHTRYQQMQL 368 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E LS++V++NK E G + L +++ +V A G ++ RGD +I S DF Sbjct: 369 ENLSVSVLINKQSAGET-------GWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDFA 421 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 Q+ + + + T + + + L + F L L + + Sbjct: 422 PTQIAEFEPMPWWQGES----YQTYLRYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKS 477 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-------RINSYVSKQS 527 + P + A T L +N + + + S Sbjct: 478 IDEPAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVK 537 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIED 556 L + R A+++ W D Sbjct: 538 MEHLSLLANQEPARVAEVIAHWIGDTEHD 566 >gi|68164520|gb|AAY87249.1| predicted flagellar basal-body M-ring protein [uncultured bacterium BAC17H8] Length = 573 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 103/555 (18%), Positives = 210/555 (37%), Gaps = 25/555 (4%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 T R ++ A + ++ + P LY L ++ R+ AL A + Sbjct: 30 RLTGGQSLRQVLPAVAGITVAVIGLVFFVVSQQPERTTLYASLPEAEKARVVDALKNAGV 89 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D + + + VP +R+ LAAQGLP +S GY+ + G + ++ + Sbjct: 90 DVVLDPSTGDVIVPVKDYHSSRMTLAAQGLP-ASIPDGYDSLSDIP-MGSSRSVENVRLK 147 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190 ++ E E+AR+I I G+V ARVH+ +P+ F + PTASV ++ + +A Sbjct: 148 QSQEIELARSISEIDGLVTARVHLAIPEKSVFARSATPPTASVFVQMENGRSLSRQQVDA 207 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKA 248 I HLV+++VP + DVTV+D G LL+ + + L ++ + Sbjct: 208 IVHLVSSSVPFMAKNDVTVVDQYGNLLSRPPQDSAGMMSDAQLEHRIRLEEIYRNRVIAL 267 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 ++ +G N + V +++ ++ E V DP+ RS + S ++ + Sbjct: 268 VSPIVGAGNVTAQVNLDIDFTRSEVTEEVMDPEGTALRSEQSSSESS--AEIIAKGVPGA 325 Query: 309 EQNMPHVSDRKVPLPR------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N + + NYE++ T + ++ + AV+ Sbjct: 326 TSNRAPTQTDIDTQQNVDSSDPNANRARSQSSTRNYEVSRTVSTTQRPSSQITGIQAAVL 385 Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V + + G + L EI +V+ A GI+ RGD +T++S F+ Sbjct: 386 VREMEVMNAETGLMEVSEIPEEKLKEIEALVANAIGIDDGRGDRLTVSSSTFVSA----- 440 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + I + + L++ + L +R L N G + Sbjct: 441 ----LEGIKKPWYDMDWAIMIMRQGLTILIMAVVVLGVIRPLINRVMVPTAAGGPGEAIV 496 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEE 540 + T + D + + +++ + + + ++ Sbjct: 497 TADDDVDLDTVEIQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDKVAVIRMIVSDEAG 556 Query: 541 RFAKILRKWARSEIE 555 R + + + + +++ Sbjct: 557 RVSNVFKSMMQQDMD 571 >gi|308050036|ref|YP_003913602.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] gi|307632226|gb|ADN76528.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] Length = 540 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 110/562 (19%), Positives = 214/562 (38%), Gaps = 46/562 (8%) Query: 3 ILDQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +L + R+ R +++ +V+ + + + S Y LY E D Sbjct: 17 FMARLRGLWARWQGASRSDRQVLVIAVMATVVATVIVLVLWTASRGYRPLYGSQEGFDSA 76 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + I V +G+AR+ LAA+G+ + +G EL DK + G Sbjct: 77 EIIEVLEAEKIPYRMQADSGQILVLEDQLGRARMTLAARGI-RAKMPAGMELLDKAGALG 135 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA- 179 + F++E LEGE++RTI ++ + +ARVH+ +P F + P+A+VM+ Sbjct: 136 SSQFLEEARYRLGLEGELSRTIMAMKAVRSARVHLAIPKRTLFIRQQPEKPSAAVMLELY 195 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIV 234 EAI +LV AV + + V+V+D G+LL+A+ + + L+ Sbjct: 196 SGATLSRDQVEAIVNLVVGAVTAMPVDAVSVVDQNGRLLSADLELAQELARSGERQLTYN 255 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 Q ++ + + L LG N+R V A +N D + DP++ V R + + Sbjct: 256 QQMEQALNQRASDMLQPILGYGNYRVQVAARVNFDQIEETREQVDPENTVV--TREASRS 313 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + N P ++ +N + E +E + T +L Sbjct: 314 DTRGGNLAIGIPGALSNQPPATNADEEEAAPAQNLSSESE-RYFETSRAVRHTKFQQAQL 372 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 ERLS++V++N + L ++ ++V A G + RGD++++ + F Sbjct: 373 ERLSVSVLLNSEA----------GQWSQAQLDQLGQLVQDAIGFEAARGDSLSLHAFPFA 422 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + ++ + + L+ + L + L L + ++ Sbjct: 423 AQPVPEMEPLPWW----QTQEYQLYLRYLIGALLGLGLILFVLRPLVKHLTRTVEQEKAQ 478 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + P V + P L + Sbjct: 479 AEAAQAALLPKHEPVVEPVTPEL--------------------PPPGSALSVQLEHLSLL 518 Query: 535 IEINEERFAKILRKWARSEIED 556 R A+++ +W + D Sbjct: 519 ANEEPARVAEVITQWMSNNERD 540 >gi|256830792|ref|YP_003159520.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028] gi|256579968|gb|ACU91104.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028] Length = 537 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 134/555 (24%), Positives = 252/555 (45%), Gaps = 32/555 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L + T + ++L +++ ++ F F++N Y LY +L D Sbjct: 5 LQNTLAKATDFWTDKSLAQRILLGGLLVSLLIAFFVMIFWMNKVDYRVLYSQLYQDDAAS 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + I ++I+D+G++I VP MV +ARI LA +G G+ELFD+ + G Sbjct: 65 VVSYLQKEKIPYQITDSGATIMVPGDMVYEARIKLAGEG-SLHGQGIGFELFDENS-IGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T+F+Q I RAL+GE++RTI +S + +ARVH+V+P+ F + A P+A++M++ Sbjct: 123 TNFVQGINYQRALQGELSRTISELSEVESARVHLVLPNKSLFVEEQAPPSAAIMLKLKGG 182 Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237 + +AI +LV+ +V + +T+ DS GK+L + + + + L ++ Sbjct: 183 RSLGAQQVQAIVNLVSTSVEGMSAEHITLADSRGKILYEPKTDTDIAGLSSTQLEYQTSM 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 Q +E I + L +G + V A+L+ D IR+ ++DP S V RS +++ + Sbjct: 243 QRSLEQRIEQLLLPIVGPGRVIARVNADLDFDRTTIRKEIFDPKSAVVRSEVKNEEESKG 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + N +DR + + + + +N++IN + ++RL Sbjct: 303 SANVDGGTP--DPNYQGENDRTASG--TAQESVRTSSTTNFDINKEEQQIIAQVGSIKRL 358 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AV+V+ + + G A + + +I ++ A G + RGD I ++S+ F E Sbjct: 359 SVAVLVDGKYIQQQDGTYAFEPLNAEQMEQIRQLSQRAVGFDDARGDAIEVSSISFGEP- 417 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 G Q +D+ SR+F + L+ + LL + K V Sbjct: 418 ---VGAEQAPLLDVASRYFQLLGKPLLNTLIILLFLLFVARPVVLALIRPKVDKPTVQTA 474 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 L A+T GL D A+D+ + + + ++E Sbjct: 475 DQLGAAQELMALTEGLNEEDMAAVDAVKRI-----------------ENAKHLAQQLVEQ 517 Query: 538 NEERFAKILRKWARS 552 N ++ I+R+W Sbjct: 518 NMDQAVMIMRQWMTQ 532 >gi|32490809|ref|NP_871063.1| hypothetical protein WGLp060 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166015|dbj|BAC24206.1| fliF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 569 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 121/561 (21%), Positives = 224/561 (39%), Gaps = 54/561 (9%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 +L S ++ I L + ++ S +Y LY + D I LS NI ++ S N Sbjct: 30 KYLLLSFGVIGIALSIVLITWLQSSNYQVLYTNISDQDSGDIISELSTLNIPYKFSKNNG 89 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 SI VP + + R LA + LP S G+E+ D +SFG++ F + I RALEGEIAR Sbjct: 90 SIMVPEDKIYETRFLLAQKNLPKGGS-IGFEILDN-SSFGISQFNENINYQRALEGEIAR 147 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAV 199 TI++I+ I +ARVHI +P F + +AS+ + +AIR LV+ V Sbjct: 148 TIETINSIKSARVHIAIPKSSVFIRDNKPSSASITLGLHAGRTLDKNEIQAIRWLVSGTV 207 Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 PNL + ++ ++D+ GKLL + + L ++ I+ E I + L +G +N Sbjct: 208 PNLPVSNIVLVDNYGKLLAYPDNNNDDKNITQLQYIKDIELEYRRRIEEILIPIVGFNNV 267 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD--AQRSETSQPESAVTVEQNMPHVS 316 ++ V A+++ + + P++ S+ + + E N P Sbjct: 268 KAEVTAQIDFTKTEQTSEKHKPNTNPNEMSIRSQQITENNNFSQVAEGVPGALSNQPSQV 327 Query: 317 DRKVPLPRS------------------------LENTDKKEEQSNYEINTKSIATTHDNY 352 + N +KE+ NYEI+ + Sbjct: 328 SSANIDEENEEIDKDAESEKEIDKKNNSSSKVEKPNNVQKEKIINYEIDRTLTHSKFSTG 387 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 L+RLS+AVV+NK + + + EI ++ G + R DT+ + + + Sbjct: 388 ILKRLSVAVVINKK----EDQKGNQINFEEKEMQEITSLIKEVMGYSEERNDTLDVVNAN 443 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F+ + R I+ + +++ L+ ++ Sbjct: 444 FVNKKDEIFNIP----FWENIRIQNIFISLIKYILSFALMWLFINKFIKIWKTS------ 493 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + N ++ + + + N + I+ Y ++ S +L Sbjct: 494 --------EQNQLKNKIDKKSFQEKNNSIVNEKNNEINKKINEEENISIY-TENSIKKLQ 544 Query: 533 HMIEINEERFAKILRKWARSE 553 + + + AKI+ +W + E Sbjct: 545 EIADKQPKLVAKIISQWIKKE 565 >gi|260779317|ref|ZP_05888209.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] gi|260605481|gb|EEX31776.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] Length = 556 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 106/567 (18%), Positives = 213/567 (37%), Gaps = 31/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L Q + + R L+L++V+ + + + ++ Y LY + E D Sbjct: 3 DFTHKLKQLWSN-----SQRNLVLSAVLAAIVAAIIVVALWSSTQSYRPLYSQQERFDTG 57 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I++R+ + + VP V + R+ LAA+G+ + +G + + +S G Sbjct: 58 EIVSVLESEGINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPTGLDSLKEDSSLG 116 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + ++ + ++ Sbjct: 117 TSQFMETARYRHGLEGELIRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELK 176 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +L+ +V + V+V+D G+LL+A+ + K L + Sbjct: 177 PGEDLKPEQVEAIINLIVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 236 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I + L +G NFR V A+L+ + + + D + Sbjct: 237 NVEKQIIQRASDMLTPIVGPSNFRVQVAADLDFSQVEETQEILD---NTPIVRNEHTISN 293 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 294 NSIDQIALGVPGTLSNQPPVTGEVPTQD-SQNTNARSEVNRQYAVGSSVRRTHYQQGQIE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N+ A+I+ +V+ A GI + RGD++++ S F Sbjct: 353 KLSVSVLLNEAAAPNG------TAWTADEKAQISTMVTDAVGIAADRGDSLSLMSFSFTP 406 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + T+ + + + ++ + + + F L L D + E+ Sbjct: 407 LAIEAPPTIPWWQDPTIQQ----PMRYVIGGMLGMAMIFFVLRPLIMHLTGADMRSQELE 462 Query: 476 GKSILSPP-----PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 P N ++ N + Sbjct: 463 FAEPQEEPIFDNLQTREEREREEALNRKLSEKGIAASSGLDVGNDMLPPAGSPLEIQLKH 522 Query: 531 LLHMIEINEERFAKILRKWARSEIEDR 557 L + ER A++L++W R Sbjct: 523 LQLIANEEPERVAEVLKQWVNVNEHSR 549 >gi|322379554|ref|ZP_08053893.1| flagellar MS-ring protein [Helicobacter suis HS1] gi|322379773|ref|ZP_08054077.1| flagellar MS-ring protein [Helicobacter suis HS5] gi|321147801|gb|EFX42397.1| flagellar MS-ring protein [Helicobacter suis HS5] gi|321148014|gb|EFX42575.1| flagellar MS-ring protein [Helicobacter suis HS1] Length = 567 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 116/576 (20%), Positives = 220/576 (38%), Gaps = 25/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKL 55 M L Q + L R + + + + + + + + + Y L+ + Sbjct: 1 MDFKSLLQQVISFFSKLNRAQKITIVTAVTLIVAFLVFLLIYPTHDKGDLSGYGVLFEGM 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 + SD I L + +I ++I +I +P + + RI LA+QG+P +S GYE+FD Sbjct: 61 DNSDNALILQHLQQKHIPYKIPKE-DTILIPRDRIYEERISLASQGIPKTS-KVGYEIFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + FG T F Q I +RA+EGE++RTI+S++ I A VHI +P F PTASV Sbjct: 119 IKD-FGATDFDQNIKYIRAIEGELSRTIESLNPIEKANVHIAIPKDSVFVSHEIPPTASV 177 Query: 176 MIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230 M++ + I++L+AA+VP L + +V +++ G+ L N+ R + Sbjct: 178 MLKIKPNMRLLPRQIIGIKNLIAASVPKLTVENVKLVNENGEPLGENDQLDTTRELAQAQ 237 Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L Q ++ +E I LA + G D + V AE + ++ + +DP++ V Sbjct: 238 LRYKQNFENMLESKIANILAPIVGGRDKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQT 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + Q V N+ V + E +K +NYE+ Sbjct: 298 MEEKKEGLPKKQVGGVPGVVSNIGPVQGI--ANDQLKEKYEKSTNTTNYEVGKMVSEIKG 355 Query: 350 DNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + L RL+ AVVV+ + + +IN +V A G N RGD + Sbjct: 356 EFGVLTRLNAAVVVDGKYQKVNKNGTESMEYVALSAAEMDQINALVKQAIGYNQNRGDAV 415 Query: 407 TITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 T+++ +F + + + +++ L++ + Sbjct: 416 TVSNFEFNAKSTKYVPMSAYERVVATTEKVLGPFSSLFKYIIVGLVLYVFYKKIITPFSQ 475 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + + + + + Sbjct: 476 RMLEIQPDEEEQVQSLFATEEEDDEEVDKFGEMRKKVEDQLGLSASFDE-----EDVKYD 530 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561 R+ H ++ E A + + + E+ T+ Sbjct: 531 IMLERVRHSLKEKPEEIASMFKLLIKDEVAITNTKE 566 >gi|220904839|ref|YP_002480151.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869138|gb|ACL49473.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 547 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 122/560 (21%), Positives = 242/560 (43%), Gaps = 23/560 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + F + + + A + + + ++ P Y LY L D + Sbjct: 5 IQQFINSFKAVWAKMSHLQRMAAAGGAVALLAGIIGLSIWMGRPEYRVLYSNLGPEDASV 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL + +RI+DNG++I VP +V RI +A +G G+E+FDKV G Sbjct: 65 VVKALQSDKVAYRITDNGATIMVPQEVVYDQRIKIAGEGG-LVGQGIGFEIFDKV-KVGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q+I RAL+GE+ARTI + +ARVH+V+P F + P+ASV+++ I P Sbjct: 123 TDFVQKINYTRALQGELARTISEFPSVESARVHLVIPRRSLFVEERQSPSASVVLKLIRP 182 Query: 183 ---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAI 237 K AI +++ +V LD G V++ D++GK+L E + + Q + Sbjct: 183 NIKVDQKEINAILNMMLMSVEGLDRGHVSITDTSGKVLYQPEEDSLAGITTTQMEYRQTV 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 Q +E I + L G + V A+++ + IR ++DP+ RS S+++Q+ Sbjct: 243 QRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRRELFDPERTAVRSEYRSEESQQG 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + V + + S ++ ++ +NYEIN + + +L RL Sbjct: 303 RANLEAGSPDV-----NFRGDGITGSVSDQSGTREARTTNYEINKEEQQIVSNVGELRRL 357 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AV+++ + + G + L ++ ++V A G+++ RGD + ++S F +++ Sbjct: 358 TVAVLIDGTYV-KADGAWTFMPRKSEELEQVRQLVHNAVGLDTGRGDALEVSSAPFTDSE 416 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 +F D+L+ + + L+ + L L + + + GE+ Sbjct: 417 PPRDP----NFADMLADYAERLGKPLLNALLAFLFLMLIVRPVVLALIRPKVEAGEMVEG 472 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P + D Q + + + + + + + Sbjct: 473 LEGLPAAEEQLALYEALEEAARTEDEVPQ------EDDEDDLVFKDIEALKAHIFTLSDN 526 Query: 538 NEERFAKILRKWARSEIEDR 557 + E+ ++R W +++ + Sbjct: 527 HMEQVVTLVRGWMKNDEAVK 546 >gi|302342347|ref|YP_003806876.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075] gi|301638960|gb|ADK84282.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075] Length = 560 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 114/526 (21%), Positives = 218/526 (41%), Gaps = 35/526 (6%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 ++N P Y L+ L D +++ L + +D+++ G++I VP V +AR+ LA+ Sbjct: 59 FLWLNQPDYQTLFSGLSQQDASQVVNQLKDMKLDYKLESGGTTILVPEESVYEARLTLAS 118 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 GLP ++ G+E+F++V G T F+Q I RAL+GE+ARTI S + ARVHIV+P Sbjct: 119 AGLPRGTAGVGFEVFNEVQ-MGATDFVQRINYQRALQGELARTISSFGEVEDARVHIVLP 177 Query: 160 DMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F + +P+A+V++R + HLVA +VP+L VT++D+ G LL Sbjct: 178 RESLFVEDEKKPSAAVVVRLARGQSLSAGQIAGVVHLVAGSVPDLTDDRVTIVDTNGNLL 237 Query: 218 TANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 +++ + L + ++ + L LG V A+++ Sbjct: 238 YRKDVDTADFPAALTASQLDYQKNLERGFVAKVQSMLEEVLGPGRAVVRVNADIDFTRTS 297 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 + ++DPD RS + D + + P + + + TD + Sbjct: 298 TTQDLFDPDQVAVRSETRASDKSINSGNMPIGSPDQRFTLAEANANPEEGQNQS-KTDTE 356 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEI 388 E +NYEI+ L+RL++AV+++ + + + ++ Sbjct: 357 NETTNYEISRTQKQVQKAIGGLQRLTVAVMIDGPYKDAADAEGNTTRSFAPRSAEEMQQL 416 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 ++V A G +++RGD +T+ ++ F + V D L + +N ++ L+ Sbjct: 417 TELVRRAVGYDAQRGDQVTLANIPFQLPVGTDDMGVMTWE-DYLKQWGKPALNIILALLF 475 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 L L + ++ + + E+ + P +A + ++ I Sbjct: 476 FL----LVIRPALKMASRYVNARSELAAATRRVGPGEELPGGGMDEQAAALAESAMSRKI 531 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++L + + + ER LR W Sbjct: 532 G-----------------VRDQILLVAQQDPERATAALRGWIHETE 560 >gi|221640811|ref|YP_002527073.1| flagellar MS-ring protein [Rhodobacter sphaeroides KD131] gi|221161592|gb|ACM02572.1| Flagellar M-ring protein FliF [Rhodobacter sphaeroides KD131] Length = 542 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 116/549 (21%), Positives = 215/549 (39%), Gaps = 23/549 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L R ++ + + + P LY L+ + A Sbjct: 15 VQNLISIWNDLDGRRRAVVVGATVAMFLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTA 74 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M Sbjct: 75 LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 131 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + +RA EGE+ARTI + + AARVHI P FR+ + + + Sbjct: 132 FDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFRREQRPTASVTVTTSGGAVTAD 191 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A A +HLVA+AV L DV+V+DS L+ + + + + ++ E+ N+ Sbjct: 192 QARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAA----GESRAAELRSNVE 247 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G V ++ + I E +DP +V S + + S P+ V Sbjct: 248 RLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--V 305 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P + +S T + E N+E++ + RL++AV+V+ Sbjct: 306 TVASNLPEGDAKGGTGGKST--TSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGI 363 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G + + + LA + ++V +A G++ RGD +T+ S+ F + Sbjct: 364 KTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAFETPPEAGTLAETG 423 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + + ++I V + L++ + + A + P Sbjct: 424 FLSRLGAFDLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPAL 483 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + D+ + ++ RL +IE + +IL Sbjct: 484 TGEIDDSG------------DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEIL 531 Query: 547 RKWARSEIE 555 R W + E Sbjct: 532 RGWMEPQRE 540 >gi|303326607|ref|ZP_07357049.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3] gi|302862595|gb|EFL85527.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3] Length = 548 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 120/557 (21%), Positives = 238/557 (42%), Gaps = 22/557 (3%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + + + + + + +A + + + +V P Y LY L D + Sbjct: 5 IANFVDTLKGIWSKMSVIQRVAVAGGAVALLAAVIGLSVWVGRPEYRVLYSNLGAEDASH 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL I ++++DNG++I VP +V RI +A +G G+E+FDKV G Sbjct: 65 VVKALQTDKIPYQLADNGATIMVPKEVVYDQRIKIAGEGG-LVGQGIGFEIFDKV-KVGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181 T F+Q+I RAL+GE++RTI + +ARVH+V+P F + P+ASV+++ Sbjct: 123 TDFVQKINYTRALQGELSRTISEFPSVESARVHLVIPQRSLFVEERQSPSASVVLKLTNP 182 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAI 237 S AI +++ AV LD G V++ D+ GK+L E + + + Sbjct: 183 NSKPDQKEISAILNMMLMAVEGLDKGHVSITDNGGKVLYQPEEDSLAGASSTQMEHRLQV 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 Q +E I + L G + V A+++ + IR +DP+ RS + S+++Q+ Sbjct: 243 QRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRREFFDPEKTAVRSEQRSEESQQG 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + A + + S +N ++ +NYEIN + + L RL Sbjct: 303 RANLEAGAPDT-----NFRGDGITGSVSDQNGTRETRTTNYEINKEEQQIVANVGDLRRL 357 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AV+++ + G+ + + L + ++VS A G++ RGD + ++S F +++ Sbjct: 358 TVAVIIDGTY-EKADGKWSFVPRKAEELDRVRQLVSNAVGLDKGRGDLLEVSSAPFTDSE 416 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 +F D+L+ + + L+ + L L + + + GE+ Sbjct: 417 PPKDP----NFADLLADYAERLGKPLLNALLAFLFLMLIVRPVVLALIRPKVEAGEM--- 469 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + A L + + + + + + + + + Sbjct: 470 --VEGLEGLPAAEEQLALYEALEEAAKADEEGPEQEEDDGELVFKDIEALKAHIFTLSDN 527 Query: 538 NEERFAKILRKWARSEI 554 + E+ ++R W R++ Sbjct: 528 HMEQVVTLVRGWMRNDE 544 >gi|311086968|gb|ADP67048.1| flagellar MS-ring protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 545 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++L + +F + + ++ + I ++ ++ SP Y LY L D Sbjct: 9 SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDSG 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG Sbjct: 68 SIINELNEMKIPYQFTDSDGLILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291 I L +G+ N + V A+++ + Q+ + Y P+S + S Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345 + + + + ++ N + ++ N ++ NYE+N Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T + +++RLS AV+VN + I ++ A G + RGD+ Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + + S + AL L Sbjct: 422 VHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + P ++I + N+ + Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516 Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552 + ++ ++ N A I+R+W Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543 >gi|145297444|ref|YP_001140285.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850216|gb|ABO88537.1| lateral flagellar M-ring protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 584 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 126/584 (21%), Positives = 234/584 (40%), Gaps = 45/584 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILIL-ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + ++ + ++ SL R IL +++ + + + +S +Y LY K E+ D Sbjct: 15 SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 74 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + + FR+ + I VP S + R+ LAA+G+ ++ SG E D V Sbjct: 75 ANIMEMLEKEQVPFRLEKSSGQILVPESQLAHVRMALAARGV-RAAMPSGLEGLDTVTGL 133 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVM--I 177 G + FM+ ALEGE+ARTI S+ + +ARVH+ +P F + +P+ASVM + Sbjct: 134 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMMDL 193 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + EAI +LVA ++ + G VT++D G+LL+A + + + Sbjct: 194 QPGQAMEPGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 253 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 V+ ++ I + L LG NFR + A++N + + + DP + S Sbjct: 254 VRKLEQYIRQRASDMLYPMLGTSNFRVQIAADVNFNAVEETQQQLDPQG---VVTKESTK 310 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEIN 341 + ++ + N P + K P + + Q N YE + Sbjct: 311 SDKTIDALALGIPGALSNRPPETTPKNEQPAQNQVEANTDTQKNDSRTERQEVSKQYENS 370 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + T + +LE++++++++N+ + G L +I ++V + G ++ Sbjct: 371 RTIVHTRYQQGRLEKMNVSILLNQQSAPKD-------GWSAEQLEQIRQMVERSVGFDNA 423 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD I++ DF + LV + L + F G+ L Sbjct: 424 RGDQISLQVFDFTAAVPIVPPESGWWETPYWQDS----LRYLVGGLLGLTLVFFGIRPLV 479 Query: 462 RLHNIDDAKKGEVGGKSILSPP----------PISSAVTTGLMPNDNIALDSSNQDIFSH 511 + E + P +A+T +M N I D+ + FS Sbjct: 480 KHLVRTQQLPDEEPTEEQDEPQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSS 539 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + L ++E + R A+++R W + Sbjct: 540 LNLEALPEPGSELEVQLQHLQLLVEKDTARVAEVVRSWVSGNEQ 583 >gi|219681452|ref|YP_002467837.1| flagellar M-ring protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682008|ref|YP_002468392.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471127|ref|ZP_05635126.1| flagellar MS-ring protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621741|gb|ACL29897.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624295|gb|ACL30450.1| flagellar M-ring protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086388|gb|ADP66469.1| flagellar MS-ring protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 545 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++L + +F + + ++ + I ++ ++ SP Y LY L D Sbjct: 9 SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDSG 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG Sbjct: 68 SIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291 I L +G+ N + V A+++ + Q+ + Y P+S + S Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345 + + + + ++ N + ++ N ++ NYE+N Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T + +++RLS AV+VN + I ++ A G + RGD+ Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + + S + AL L Sbjct: 422 VHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + P ++I + N+ + Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516 Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552 + ++ ++ N A I+R+W Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543 >gi|126463732|ref|YP_001044846.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17029] gi|126105396|gb|ABN78074.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] Length = 542 Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 119/549 (21%), Positives = 219/549 (39%), Gaps = 23/549 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L R ++ S + + + F P LY L+ + A Sbjct: 15 VQNLISIWNDLDGRRRAVVVSATVAMFLAVLGLSQFAGRPPMALLYAGLQGPAAGEVVTA 74 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M Sbjct: 75 LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 131 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + +RA EGE+ARTI + + AARVHI P FR+ + + + Sbjct: 132 FDAAYLRAKEGELARTILASPKVKAARVHIAQPAAQPFRREQRPTASVTVTTSGGAVTAD 191 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A A +HLVA+AV L DV+V+DS L+ + + + + ++ E+ N+ Sbjct: 192 QARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAA----GESRAAELRSNVE 247 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G V ++ + I E +DP +V S + + S P+ V Sbjct: 248 RLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--V 305 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P + +S +T + E N+E++ + RL++AV+V+ Sbjct: 306 TVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGI 363 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G + + + LA + ++VS+A G++ RGD +T+ S+ F + Sbjct: 364 KTVADDGTVGWEPRPEEELAVLRELVSSAVGLDESRGDRLTLRSLAFETPPEAGTLAETG 423 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + + ++I V + L++ + + A + P Sbjct: 424 FLSRLGAFDLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPAL 483 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + D+ + ++ RL +IE + +IL Sbjct: 484 TGEIDDSG------------DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEIL 531 Query: 547 RKWARSEIE 555 R W + E Sbjct: 532 RGWMEPQRE 540 >gi|311087544|gb|ADP67623.1| flagellar MS-ring protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 545 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++L + +F + + ++ + I ++ ++ SP Y LY L D Sbjct: 9 SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDSG 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG Sbjct: 68 SIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291 I L +G+ N + V A+++ + Q+ + Y P+S + S Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345 + + + + ++ N + ++ N ++ NYE+N Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T + +++RLS AV+VN + I ++ A G + RGD+ Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + + S + AL L Sbjct: 422 VHLVNASFAKYDQNIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + P ++I + N+ + Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516 Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552 + ++ ++ N A I+R+W Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543 >gi|15616695|ref|NP_239907.1| flagellar MS-ring protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386782|sp|P57175|FLIF_BUCAI RecName: Full=Flagellar M-ring protein gi|25304707|pir||A84938 flagellar M-ring protein [imported] - Buchnera sp. (strain APS) gi|10038758|dbj|BAB12793.1| flagellar M-ring protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 545 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++L + +F + + ++ + I ++ ++ SP Y LY L D Sbjct: 9 SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDRG 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E I ++ +D+ I VP V + R+ LA LP S G+EL DK FG Sbjct: 68 SIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 ++ + ++I RALEGE+ARTI+ I+ + AR+HI F + + +AS+++ Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238 AI HL+++++ +L + ++T++D +GKLL +E + + I+ Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291 I L +G+ N + V A+++ + Q+ + Y P+S + S Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345 + + + + ++ N + ++ N ++ NYE+N Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T + +++RLS AV+VN + I ++ A G + RGD+ Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + + S + AL L Sbjct: 422 VHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + P ++I + N+ + Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516 Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552 + ++ ++ N A I+R+W Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543 >gi|90577381|ref|ZP_01233192.1| flagellar M-ring protein [Vibrio angustum S14] gi|90440467|gb|EAS65647.1| flagellar M-ring protein [Vibrio angustum S14] Length = 581 Score = 323 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 102/527 (19%), Positives = 199/527 (37%), Gaps = 28/527 (5%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S +Y LY + E D I L I +R+ + + V V K R+ LAA+G Sbjct: 62 WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI ++ I ARVH+ +P Sbjct: 122 I-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180 Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + A + + ++ EAI +LV +V + +V+V+D G+LL+ Sbjct: 181 TLFVRHNAEAPTASVMVELKPGEDLKTDQVEAIINLVTGSVTGMKTENVSVVDQYGRLLS 240 Query: 219 ANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 A+ + K L + ++ ++ L +G N+R V A+L+ Q + Sbjct: 241 ADIGSSEMGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETK 300 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 V D + S + N P V+ + S ++ E Sbjct: 301 EVVD---STPVVKNEHRIENNSIDNIALGVPGSLSNKPPVTGEE-ENKDSKNTNERTEIN 356 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y + + T + KL +L+++V++N ++ +I+ ++ A Sbjct: 357 RQYALGSSVRHTQYQQGKLNKLNVSVLLNSTAAPNGK------AWTEAETQQISNMIKDA 410 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI++ RGD+++I S +F + + + + +I + L + F Sbjct: 411 VGISADRGDSLSILSFNFTPIAIDAPPAIPWWQDPTVQQPLRYMI----GGILGLSMIFF 466 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS-------SNQDI 508 L L D ++ E+ ++ T L+ + Sbjct: 467 VLRPLISHLTGLDRRRDELTFAEEDIAHSYDESLQTREEQEHEETLNERLAAKGIDGTNN 526 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ N + L + ER A++L++W Sbjct: 527 AFNASNDLLPPQGSPLEIQLKHLQLISTEEPERVAEVLKQWVNVNES 573 >gi|212637769|ref|YP_002314294.1| flagellar MS-ring protein [Shewanella piezotolerans WP3] gi|212559253|gb|ACJ31707.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3] Length = 572 Score = 323 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 115/569 (20%), Positives = 207/569 (36%), Gaps = 39/569 (6%) Query: 7 LLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 L + R R + ++ + + + S Y LY E D +I Sbjct: 22 LNTLKEKWRDFNRGDRQAAVLAIFAIVAACVIVLMLWSASQGYRPLYGNQENVDTAQIIE 81 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I +R+ + + V +G+AR+ LAA+G+ + SG + D + G + F Sbjct: 82 VLESEGISYRLDASSGLVLVVEDKLGRARMLLAARGV-KAKVPSGMDSLDS-SGIGTSQF 139 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA--INP 182 M++ +LEGE++RTI ++ + +ARVH+ +P F + P+ASVM+ + Sbjct: 140 MEQAKYRYSLEGELSRTIMALKAVRSARVHLAIPKKTLFIRQQPELPSASVMLDLYSGSN 199 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQ 238 ++ E+I +LVA +V + V V+D G L +AN+ + L Q ++ Sbjct: 200 IQPENIESIVNLVAGSVTGMTPERVQVVDQNGNHLSSAISANKDITQARDRQLKYTQELE 259 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + + L LG DNF+ V A++N + + + DP V + ++ + + Sbjct: 260 QSLIGRASSMLQPILGQDNFQVQVSAKVNFNQVEETKESLDP---VSVVTQENQSSNETN 316 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 N P + + R N E +++ T +LE LS Sbjct: 317 ADMALGIPGALSNQPPAATPEENNNRRNINQK---ESRQFDVGRSVRHTRFQQMQLENLS 373 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V++N E G L +++ +V A G + RGD +I S +F + Sbjct: 374 VSVLLNSQAAGET-------GWSQPQLQQLSSMVQDAIGFSQARGDQFSINSFEFAPITV 426 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGG 476 + + + I V L + L L K + Sbjct: 427 AQFEPMPWWQGESYQAYLRYFI----GAVLGLGMIIFVLRPLVAHLTRTVEYNLKDDGSN 482 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----------RINSYVSKQ 526 PP + T + NDN + D S Sbjct: 483 IEPKRIPPADVSPTDLTLNNDNKDDPQAMADKLMGLDKNPSNGEWSSDIGLPAAGSPLAV 542 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 L + R A+++ W + E Sbjct: 543 KMEHLSLLANQEPARVAEVIGHWISEKDE 571 >gi|254228798|ref|ZP_04922221.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262396483|ref|YP_003288336.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|151938745|gb|EDN57580.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262340077|gb|ACY53871.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] Length = 569 Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats. Identities = 106/566 (18%), Positives = 219/566 (38%), Gaps = 30/566 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 17 DVTTKLKQIWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V K R+ LA++G+ + +G + + +S G Sbjct: 72 EIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLG 130 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + ++ + ++ Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELK 190 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 191 PGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + + + D Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETQEILD---NAPVVRNEHTIHN 307 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ +V S + E Y + + T + ++E Sbjct: 308 NSVDQIALGVPGSLSNQPPVTGEEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 367 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++S++V++N + ++ +I+ ++ A GI++ RGD++++ S +F Sbjct: 368 KMSVSVLLNSKASPDG------VAWSEADKEQISNMIMDAVGISAARGDSLSLMSFNFTP 421 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ + + + I ++ + L + F L L D E+ Sbjct: 422 IEIDAPPALPWWQDPTVQQ----PIRYVIGGLLGLAMIFFVLRPLIMHLTGVDKPVPELD 477 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530 P + T ++ + ++ S S L + Sbjct: 478 FAEPQEEPDYDNLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKH 537 Query: 531 LLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 538 LQLIANEEPERVAEILKQWVNINEHS 563 >gi|283853241|ref|ZP_06370492.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B] gi|283571346|gb|EFC19355.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B] Length = 546 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 112/564 (19%), Positives = 225/564 (39%), Gaps = 36/564 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + ++ + ++L + + F+ + +N LY + D +R Sbjct: 5 LSQTFEKLIQYWSNRSAAQRILLGGLAGSMAIAFLVMVYLLNQAEMRVLYTNMAPEDASR 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + + + +NG+++ VP+ V + R+ +A +G+ G+ELFD++ G Sbjct: 65 VVELLKASKTPYELRENGTTVLVPAEAVYEQRLKVAGEGVMH-GQGVGFELFDQL-KVGQ 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180 T F+Q I RAL+GE++RTI + ARVH+V+P F + + +ASV++ Sbjct: 123 TDFVQRINYSRALQGELSRTITEFPQVEKARVHLVLPQKSLFIEEQKKASASVVLTLKRG 182 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237 K + I +LVA +V L +T+ D+TG+ L + + Sbjct: 183 QKLDAKQLQGIVNLVAMSVEGLTPEHITITDTTGQSLYQPRADGGLDGLSTTQFEFKNTF 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +E I + L +G + +L+ + +R+ +YDP+ V RS + S+++ Sbjct: 243 EANLENRIEQLLTPIVGPGRALAKANVDLDFSQRTVRKELYDPNVTVVRSEQKSEESTSG 302 Query: 298 ETSQPESAVTVEQ-------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + T + S + + ++ +NYEIN + Sbjct: 303 SAAVDAGGATTTPRGGGAAVPNSNFRGDGYSGTESTQKSSRQNSTTNYEINKEEQNVVTP 362 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 L+R SIAV+V+ + + L I ++V+ A G++ RGD I ++ Sbjct: 363 VGDLKRQSIAVIVDGTYEKVEGKNTFTFVPRKAEELERIKQVVARAAGLDPARGDEIQVS 422 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 S +F ++ + ++ R +N L+ + + L + + Sbjct: 423 SFEFGVPDGSGEPSLMQTMLEYAQRLGKPFLNGLLLFLFLI----LVVRPVVLALIRPRV 478 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E+ L A+ ++ LD + Q S + L Sbjct: 479 TEEEIETLERLPEGEARLALAEAEEGDEVTMLDGAKQFELSKNLAL-------------- 524 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + E N E+ +L+ W + E Sbjct: 525 ---QLFEENMEQSMTLLKSWLKQE 545 >gi|332559789|ref|ZP_08414111.1| FliF2 [Rhodobacter sphaeroides WS8N] gi|332277501|gb|EGJ22816.1| FliF2 [Rhodobacter sphaeroides WS8N] Length = 533 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 115/549 (20%), Positives = 216/549 (39%), Gaps = 23/549 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L R ++ + + + P LY L+ + + A Sbjct: 6 VQNLISIWNDLDGRRRAVVVGATVAMFLAVLGLSQLAGRPPMALLYAGLQGAAAGEVVTA 65 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + G S+ V ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M Sbjct: 66 LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + +RA EGE+ARTI + + AARVHI P F++ + + + Sbjct: 123 FDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFQREQRPTASVTVTTSGGAVTAN 182 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A A +HLVA+AV L DV+V+DS L+ + + + + ++ E+ N+ Sbjct: 183 QARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAA----GESRAAELRSNVE 238 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A G V ++ + I E +DP +V S + + S P+ V Sbjct: 239 RLLEARAGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--V 296 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P + +S +T + E N+E++ + RL++AV+V+ Sbjct: 297 TVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGI 354 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G + + + LA + ++V +A G++ RGD +T+ S+ F + Sbjct: 355 KTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAFETPPEAGTLAETG 414 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + + ++I V + L++ + + A + P Sbjct: 415 FLSRLGAFDLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPAL 474 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + D+ + ++ RL +IE + +IL Sbjct: 475 TGEIDDSG------------DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEIL 522 Query: 547 RKWARSEIE 555 R W + E Sbjct: 523 RGWMEPQRE 531 >gi|119947167|ref|YP_944847.1| flagellar MS-ring protein [Psychromonas ingrahamii 37] gi|119865771|gb|ABM05248.1| flagellar M-ring protein FliF [Psychromonas ingrahamii 37] Length = 582 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 113/557 (20%), Positives = 228/557 (40%), Gaps = 22/557 (3%) Query: 2 AILDQLLQFFKSGTSLGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + L + K L +R + +V L ++ + + +S +Y LY E + Sbjct: 40 TLFSALSVWGKILYLLKNSRKSFAVITVFLTALVTILVILLWSSSSNYRPLYGIQEPYNN 99 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + I AL NI +++ + I V V K R+ LAA+G+ ++ G + K ++ Sbjct: 100 SDILAALEAENIKYQMQPDTGLILVEDGEVAKIRMLLAAKGV-KATLPEGLSVLGKQSAL 158 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI-- 177 G + F++ LEGE+A+TI S++ I ARVH+ +P F + TA+VM+ Sbjct: 159 GTSQFIENARYNLGLEGELAKTIMSLNAINNARVHLAIPKENLFVGRGDNIATAAVMLDV 218 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIV 234 ++ + +I +LVA +V NL+ V++ D +G+LL+ + K L Sbjct: 219 KSGDKLSVAQITSIMNLVAGSVNNLNPESVSITDQSGRLLSDDVNDGEYSLASSKQLEYK 278 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 I+ +I+ L LG +NFR A+++ +Q +D + V S +D Sbjct: 279 AGIEQQIKKQAKSMLIPILGENNFRIESAADIDFSKKQETMERFD-ATPVLLSEMSIEDD 337 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 +S + P V D + P + + ++E Y + + T + K+ Sbjct: 338 DQS--DIAIGIPGSLSSTPPVVDGQESTPNNSKKKLRRELNRKYAVGSSVTHTEYQQGKI 395 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +S++VV+NK + L++IN ++S+A G++ RGD+I +TS F Sbjct: 396 NHISLSVVINKDIAPD-------GEWTADELSKINAMISSAVGLDLNRGDSINVTSFTF- 447 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + + +++ ++ + +++ + L L + ++++ K Sbjct: 448 SPIQVTNPVAAAWYEETRWQ---SLLKIIISGLVAMMLIIVVLRPLIKHITVNNSAKDAG 504 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + S+ + S + L + Sbjct: 505 PLPAEHQAIAQSTQDKEKEFAQRLAEYGIGETASGNDSMMQMLPSPNSPLSVQIQHLQLI 564 Query: 535 IEINEERFAKILRKWAR 551 + + R ++IL+ W Sbjct: 565 SKEHPNRVSEILKNWVN 581 >gi|254473325|ref|ZP_05086722.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] gi|211957441|gb|EEA92644.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062] Length = 562 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 191/566 (33%), Positives = 324/566 (57%), Gaps = 19/566 (3%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 MA + + + + LG R+++LA + L + AA + ++ P + LY LE DV Sbjct: 1 MAARENAEKIYSNLAELGAKRLMVLAFIGLFTFVAIGAAAYLLSRPEQEVLYANLERDDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I +AL + I F +S +GS+ISV +AR+ LA +GLP S +GYELFD++ S Sbjct: 61 TQIGMALQASGIPFDVSADGSAISVGVGATARARMLLAEKGLPR-GSGAGYELFDEMGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLTSFMQ +T++RALEGE+AR++QS+ G+ AARVH+V+P+ +FR+ +PTASV+IR Sbjct: 120 GLTSFMQSVTKIRALEGEVARSVQSMQGVKAARVHLVLPEKATFRRENQKPTASVLIRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQH 239 A++IR+LVAAAVP L VTVLD+ G+LL A + + G+ + + Sbjct: 180 GIQTNSIAQSIRYLVAAAVPGLTAEAVTVLDTEGQLLAAGEDAQSASTGRKAMLESNLAS 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E I +ALA +LGV+NF +V A +N D Q++ E YDP+++VERS R+ ++ S+ Sbjct: 240 RKENAIRQALAPYLGVNNFEVSVSASVNTDNQRVSETSYDPETRVERSFRVVRENATSQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + E+ TVEQN+P + RS E +++EE +NYEI+++++ T D+Y++ER+SI Sbjct: 300 ASLENPTTVEQNLPEEAVSSQSGERSSEENERREELTNYEISSRTVETIFDDYRIERMSI 359 Query: 360 AVVVNKGRLTEVLGRSADQGKID-----------SYLAEINKIVSAATGINSRRGDTITI 408 AV+VN+ RL E + R + K D + + EI +I++ A G+++ RGD +++ Sbjct: 360 AVLVNRDRLVEEMSRRVEGQKGDAVVEGEAADLTAKVEEIEEIIATAAGVDTARGDKVSV 419 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++++F+ + + ++ D+L R+ +V+NA L+ TL++ + GL Sbjct: 420 SAVNFVLAGQQLAAIPERTWQDVLMRNMGSVVNAGAILIVTLMIIWFGLRPAVAFLIPKT 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 E S S+AV G + ++ L + + + + V++ + Sbjct: 480 EVVEEGLPVGANS---NSAAVRDGEIEGEDGQLPDYSNGDGLSGEGVDATV---VNRDNL 533 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 +L +E+++ + A IL++W + Sbjct: 534 RKLERAVEMDDMQAAIILKQWMYDQE 559 >gi|83955113|ref|ZP_00963769.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1] gi|83840442|gb|EAP79615.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1] Length = 564 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 142/566 (25%), Positives = 255/566 (45%), Gaps = 24/566 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SLG+ ++++L + ++L + V P Y LY L ++ N I Sbjct: 1 MQGLIDNLKSLGKNKLMMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEAT 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L+ A + +S++G+SISVP +AR+ LA G+P G+ELFD+ + + SF+ Sbjct: 61 LANAGFNAMVSEDGTSISVPRGDAVRARMVLAETGMPIDGDP-GWELFDESSGLAMNSFL 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184 Q+I ++RA+EGE+AR+IQ++ GI +ARVH+V+PD F + P AS+++R Sbjct: 120 QKINKMRAMEGELARSIQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVT 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 K A A+ +LVA+AV +LD+ VTVL ++G+ + A + + G S I+ + Sbjct: 180 RKQAVAVSNLVASAVADLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQE 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I L A +G N R V EL + I E YDPD +V RS + Q Sbjct: 240 IQNILTARVGAGNARVHVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTGTKE--AG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V VE N+P + + +E YEI + + R+S+AV+VN Sbjct: 298 NVGVENNIPAALAD-GNGAGTSTRRSEADEIVQYEIGNTRREIVREAGDVRRMSVAVLVN 356 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + + LA + ++V A G ++ RGD++++ SM F++ + + Sbjct: 357 GIYNVDGS-DVIYAERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPI 415 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL--------------HNIDDAK 470 S D L+ + +++ ++ L+ L+ G+ + R + A Sbjct: 416 DKSIGDELTDNVVSIVRGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAA 475 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQS 527 + P + + D+ L ++ DI + + I + K+ Sbjct: 476 EPAALTAEGQRPKLPGTTPAVADIAEDDDPLTVTDDDIEAAEVAEYVRKEGIRGNLHKKK 535 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 + + + + +++R W +E Sbjct: 536 IETIQQLADEKPQEVLRVIRSWLPAE 561 >gi|157373218|ref|YP_001471818.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3] gi|157315592|gb|ABV34690.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3] Length = 570 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 104/568 (18%), Positives = 213/568 (37%), Gaps = 32/568 (5%) Query: 5 DQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + + R R +++ +++ + + + S Y LY + E + ++I Sbjct: 20 EIVSSLKTKWQQFNRGDRQVLVLAILASVVACVIVLLLWTASQGYRPLYGQQEKVETSQI 79 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L I++R+ N + V +GKAR+ LAA+G+ + SG E D + G + Sbjct: 80 IEVLEAEGINYRLEANSGLVLVQEDKLGKARMLLAARGV-KAKVPSGMESLDN-SGIGTS 137 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA--I 180 FM++ +LEGE++RTI ++ + ARVH+ +P F + P+ASVM+ Sbjct: 138 QFMEQAKYRHSLEGELSRTIMALKAVRTARVHLAIPKRTLFIRQQPELPSASVMLDLYAG 197 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQA 236 + EAI +LVA +V + V ++D G L++ N+ + L Q Sbjct: 198 SKIQPGQIEAIANLVAGSVTGMTPERVQIVDQEGNHLSSGIAINQDITQARDRQLKYTQE 257 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ + + LA LG +NF+ + A++N + + DP S + + Sbjct: 258 LEQSLINRASSMLAPVLGKENFQVQIAAQVNFNQVEETRESLDPQS---VVTQEKQSIND 314 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N + + N ++ +E YE+ T +LE Sbjct: 315 TNSDIAMGIPGALTNQAPKAQANKTEENTRRNLNQ-QESRQYEVGRSVRHTRFQQMQLEN 373 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N + + G ++ ++++ +V + G + +RGD +I S DF Sbjct: 374 LSVSVLLNNQA-------AGENGWNEAQVSQLGTMVKDSIGYSMQRGDQFSINSFDFAPV 426 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 Q+ + + + I + + F L L + Sbjct: 427 QIAQFEPMPWWQTEGYQAYLRYFI----GGILGFGLIFFVLRPLVSHLTRTAEHSLKEEL 482 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-------RINSYVSKQSDL 529 + S+ + + + + + ++ Sbjct: 483 PQVEPALEAPSSSSISGVQSGDGQALADQLMGLEQDKSDTDWLSNQGLPAPGSPLTVKME 542 Query: 530 RLLHMIEINEERFAKILRKWARSEIEDR 557 L + R A+++ W +R Sbjct: 543 HLSLLANQEPARVAEVIAHWIGDNENER 570 >gi|89072278|ref|ZP_01158857.1| flagellar M-ring protein [Photobacterium sp. SKA34] gi|89051810|gb|EAR57262.1| flagellar M-ring protein [Photobacterium sp. SKA34] Length = 582 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 109/561 (19%), Positives = 218/561 (38%), Gaps = 30/561 (5%) Query: 10 FFKSGTSL--GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + K+ +L R L+L++V+ + + + +S +Y LY + E D I L Sbjct: 28 YMKNLKNLWHSSQRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSGEIISVL 87 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I +R+ + + V S V K R+ LAA+G+ + +G + + +S G + FM+ Sbjct: 88 ETEGIPYRLQEANGQVLVAESEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLGTSQFME 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSV 184 LEGE+ RTI ++ I ARVH+ +P F + A + + ++ Sbjct: 147 TARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELKPGEDLK 206 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEI 241 + EAI +LV +V + +V+V+D G+LL+A+ + K L + +++++ Sbjct: 207 TEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSAEMGKVNAKYLDYQKNLENQV 266 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 L +G N+R V A+L+ Q + V D + S + Sbjct: 267 IQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVD---STPVVKNEHRIENNSIDNI 323 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N P V+ + S ++ E Y + + T + KL +L+++V Sbjct: 324 ALGVPGSLSNKPPVTGEE-ENKDSKNTNERTEINRQYALGSSVRHTQYQQGKLNKLNVSV 382 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 ++N ++ +I+ ++ A GI++ RGD+++I S +F + Sbjct: 383 LLNSTAAPNGK------AWTEAETQQISNMIKDAVGISADRGDSLSILSFNFTPIAIDAP 436 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + + +I + L + F L L D ++ E+ + Sbjct: 437 PAIPWWQDPTVQQPLRYMI----GGILGLSMIFFVLRKLISHLTGLDRRRDELTFAEEDT 492 Query: 482 PPPISSAVTTGLMPNDNIALDS-------SNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 ++ T L+ + ++ N + L + Sbjct: 493 AHSYDESLQTREEQEHEETLNERLAAKGIDATNNAFNASNDLLPPQGSPLEIQLKHLQLI 552 Query: 535 IEINEERFAKILRKWARSEIE 555 ER A++L++W Sbjct: 553 STEEPERVAEVLKQWVNVNES 573 >gi|304438472|ref|ZP_07398412.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368555|gb|EFM22240.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 526 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 131/563 (23%), Positives = 237/563 (42%), Gaps = 53/563 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L +K R R ++L S + + +++F + ++ + P L+ +E D + Sbjct: 5 KERSLALWKRFDK--RQRYIMLGSALAILVLVFGLSFWYGSKPDMVPLFTDMETKDAGEV 62 Query: 64 SVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L E+ I + I +N G++I VP++ V +AR++LA QGLP N G+E+FD + G Sbjct: 63 ANQLRESKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPH--GNKGFEIFD-DSKLG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T F + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 120 VTEFQNRVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKP 179 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSLSIV 234 K + I +L A ++ L ++T++D TGK+L + + L + Sbjct: 180 HAELTKKEIKGIVNLAAHSIKGLTPENITIVDDTGKILNDPDDQDEKGLGAKTITQLEMT 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 + +Q IE + L LG + V EL+ D + + P D+ + RS + Sbjct: 240 RKVQDNIEKKVQTLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDI 299 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ ++ P V+ N+P + +KKE NYEIN + Sbjct: 300 SESYNGSSTNPGGPAGVQSNVP---GYVEQESNANAAYEKKESTKNYEINEERQHVIASP 356 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + R+++AV+VN I + VS+A GIN RGDTI++ + Sbjct: 357 GSIRRMTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQTRGDTISVEPL 403 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + D R F + A++ ++ ++ L +RL Sbjct: 404 PFSTEAADRRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAILMYRRKKRL-------- 455 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 +A + + +A + + L L Sbjct: 456 ------------EREAAEEAKRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNEKLAL 503 Query: 532 LHMIEINEERFAKILRKWARSEI 554 L +I+ E A +++ W E Sbjct: 504 LALIDSKPEEVALLVKTWLTEEE 526 >gi|292669732|ref|ZP_06603158.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541] gi|292648529|gb|EFF66501.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541] Length = 526 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 132/563 (23%), Positives = 234/563 (41%), Gaps = 53/563 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 ++ L +K R R ++L S + + +++F + ++ + P L+ +E D + Sbjct: 5 KERGLAMWKRFDK--RQRYIMLGSALAILVLIFGLSFWYGSKPDMVPLFTDMETKDAGEV 62 Query: 64 SVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L E+ I + I +N G++I VP++ V +AR++LA QGLP N G+E+FD + G Sbjct: 63 AKQLRESKISYEIQENKSGTTILVPTTNVHEARLNLATQGLPR--GNKGFEIFD-DSKLG 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T F + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 120 VTEFQNRVNYLQALQGELTRTIEQIEAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKP 179 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKSLSIV 234 K + I +L A +V L ++T++D TGK+L + + L + Sbjct: 180 NAELTKKEIKGIVNLAAHSVKGLMPENITIVDDTGKILNDPDDQDENAIGVKTLTQLDMT 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 + +Q IE + L LG + V EL+ D + + P D+ + RS + Sbjct: 240 RKVQDNIEKKVQSLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDI 299 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ ++ P V+ N+P + +KKE NYEIN + Sbjct: 300 SESYVGNSTNPGGPAGVQSNVP---GYVEQEANANAEYEKKESTKNYEINEERQHVIASP 356 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + RL++AV+VN I + VS+A GIN RGDTI++ + Sbjct: 357 GSIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINPTRGDTISVEPL 403 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + D R F + + ++ ++ L +RL Sbjct: 404 PFSTEAAERRAAEEQAEKDRQDRIFYAQVGLALLIIALIVGGILMYRRKKRL-------- 455 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 +A + A + + L L Sbjct: 456 ------------EREAAEEAQRIEEARAAEERAAAIAAGEVEEEDLSEEEQHQMNQKLAL 503 Query: 532 LHMIEINEERFAKILRKWARSEI 554 L +I+ E A +++ W E Sbjct: 504 LALIDSKPEEVALLVKTWLSEEE 526 >gi|89068713|ref|ZP_01156099.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] gi|89045676|gb|EAR51738.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] Length = 562 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 144/563 (25%), Positives = 250/563 (44%), Gaps = 18/563 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SLG+ R++ LA+ + + V +P Y LY L S ++ Sbjct: 1 MQSIINNLMSLGQRRLIALAATGIGLTAALLLGVGAVLAPTYAPLYSGLSPSGAAQVVGT 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A +S +G+ +SVP S + +AR+ LA QGLP G+ELFD G+ SFM Sbjct: 61 LEQAGFRVDVSADGTMVSVPDSDLARARMALADQGLPDEGVP-GWELFDNSTGLGMNSFM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184 Q I R+RALEGE+AR+IQ+I + +ARVH+V+P+ +F + P+ASV++RA S Sbjct: 120 QRINRLRALEGELARSIQTIDAVDSARVHLVLPEREAFSRARPEPSASVIVRASGRSEIG 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 A AIR+LVAAAVP+L VTVL ++G+ + A++ E S+ +++ + + Sbjct: 180 RNQARAIRNLVAAAVPDLAPSRVTVLSASGETILADDGEPGSDVSLQSVRASLEDRMSRS 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I++ L+A +G N R V +L + Q I + YDP+ +V RS + + + Sbjct: 240 IDQILSARVGAGNARVQVSVDLTTERQVILQQSYDPNQRVVRSTETRNETVEDTQAGQD- 298 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 V N+P + + +E NYEI + + +E++S+AV+V Sbjct: 299 QVDAAGNLPEALGGEAEGSTGARSNRTAADEIVNYEIGSTRSEVIREPGDVEKISVAVLV 358 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 N G + + + + ++V +A G +++RGDT+++ S+ F++ + Sbjct: 359 NGIYNRLPNGDVEYEERPPEEIERLTRLVESAVGYDAQRGDTVSVESLRFMDYSMELGDG 418 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 +L + + + L + LV G+ L G + +P Sbjct: 419 TGGGIGQLLLGNASAAMRGLFAIGIVALVMLFGVRPLATRLTARQEPDGLIAQSPDGAPL 478 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI-------------NSYVSKQSDLR 530 P A + L + N V + Sbjct: 479 PAVRPAEAAPGAPRPAAGAGAEGVSAMPDAELYDPLRGAQGEYVNLAAVNGSVQRNRLQA 538 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + ++E+ ++LR W E Sbjct: 539 IGELVEVEPAESLRVLRTWLAQE 561 >gi|462109|sp|Q04954|FLIF_CAUCR RecName: Full=Flagellar M-ring protein gi|144247|gb|AAA66325.1| flagellar M-ring protein [Caulobacter crescentus CB15] gi|13422171|gb|AAK22889.1| flagellar M-ring protein [Caulobacter crescentus CB15] Length = 536 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 124/521 (23%), Positives = 225/521 (43%), Gaps = 12/521 (2%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F+ + LY L++ + + ++ AL +A I + +GS+I VP V AR+ +A + Sbjct: 17 MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 76 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GL SS S GYE+FD N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P Sbjct: 77 GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135 Query: 161 MGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + +P+A+V I + AI++LV+++VPN+ V V+D GK L+A Sbjct: 136 RQLFEEDAEQPSAAVTIGVGSREPSSDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSA 195 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 E + ++ I + + LG R V AEL+++ +E +D Sbjct: 196 PSDESLAGKMAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEERFD 255 Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 PD +V RS ++ + + + + VT N+P T + + +NYE Sbjct: 256 PDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGANGFQQLGSR-TGQNDAVTNYE 314 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRL-TEVLGRS-ADQGKIDSYLAEINKIVSAATG 397 I+ T + ++++++AV ++ G+ A + + +I ++V A G Sbjct: 315 ISKSVTTTVQEPGTIKKIAVAVAIDGVSAPMAADGKPGAYTPRTAQEIQQIEELVKTAVG 374 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 ++ RGD + +T++ F + + Q V V LL+ + Sbjct: 375 FDAERGDQVRVTNIKFPQPEDQGLE-EQGLLAGFDKNDIMRAAELGVLAVVALLILLFAV 433 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN------DNIALDSSNQDIFSH 511 + + + + G S P + G + Sbjct: 434 RPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGEPIALAGPPVSDID 493 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 R ++I V S R+ +E + + ILR W Sbjct: 494 QRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNWLHE 534 >gi|152990373|ref|YP_001356095.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2] gi|151422234|dbj|BAF69738.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2] Length = 542 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 129/564 (22%), Positives = 241/564 (42%), Gaps = 36/564 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++L Q F++ + + + + ++L +++ Y LY L D Sbjct: 7 TIKEKLKQAFEN--KNFIKTLFLALGIGALIVLLSALLIRDISAEKYGVLYANLTADDAG 64 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L E I +++ NG I VP + R+ LAA+GLP S N G+E+FD+ G Sbjct: 65 NILTVLQEEKIPYKVEGNGKIILVPKDKIYDVRLKLAAKGLPRSQ-NVGFEIFDE-PKMG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 +T F + I +RALEGE+ARTI+ I + ARV+I +P F + ASV+I Sbjct: 123 ITHFQENINYIRALEGELARTIKKIDAVQDARVNIALPKDSIFAREEDEAKASVIISLHP 182 Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAI 237 + +AI LV+ AVP L +VTV+D++G++L+ E E + + + + Sbjct: 183 GMSLTKEQVKAIVFLVSHAVPKLKSQNVTVVDNSGRVLSDMLEENEEKEVHDVVDLKRKF 242 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +IE ++ LA LG E+ R+ +YDPD S R ++ +S Sbjct: 243 RRDIEKSVESMLARALGAQKVVVRANVEIETAKIDKRDEIYDPDKTAVVSERKIQEKSKS 302 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 QP + N+P + P L++ KK+ +NY++ I T + +K++++ Sbjct: 303 IPQQPIGSPGTPTNVP-ATINTGPNGTVLQDKSKKDITTNYDVTKSLIVTKQNVFKIKKI 361 Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++ V+++ + ++ Q + + L ++ +A G + +RGD +T+ S+ F Sbjct: 362 TVGVLIDGKYIKKMDKNGTMQVEFVPRSEQELKSFENLIKSAIGYDPKRGDQVTVVSVPF 421 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 L V+ F + ++ + L + + L ++ Sbjct: 422 ENQALAAPMQVKRGFERYILYAAFALLAIMALL-----LIWFILKQRKQKV--------- 467 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 L +++A G + S + Q ++LH Sbjct: 468 ------LLEQELATATQPGTTTPQGLTESSRKALHELEEEMSALSLQDEPIYQ---KILH 518 Query: 534 MIEINEERFAKILRKWARSEIEDR 557 + + N + A ++ KW + E + Sbjct: 519 IAQENPDLIATLISKWIKEEGSGK 542 >gi|329849956|ref|ZP_08264802.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19] gi|328841867|gb|EGF91437.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19] Length = 554 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 139/555 (25%), Positives = 235/555 (42%), Gaps = 11/555 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + FF G R+ + + +A +++ LY L++ + + I+ A Sbjct: 1 MESFFNGLQRFGIGRLTAILGAAAGIAAVILAIVLNISAQPQSLLYSNLDLKEASEITTA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ I + +GS+I V V +AR+ LA++GLP+ +S GYE+FD + G T + Sbjct: 61 LSQGGIKYEAKGDGSTIMVNRDQVAEARMMLASKGLPTQAS-VGYEIFDDAPALGQTEAV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPSVY 185 Q I RALEGE+ARTI+++ GI +ARVH+VMP F + V+ + Sbjct: 120 QNINNQRALEGELARTIRTLRGISSARVHLVMPKRELFEDAAGQPTASVVLGLSGGSLSS 179 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMN 244 +S AIR++VA AVPNL +VT++D LL A + + + + I+ + Sbjct: 180 ESVAAIRNVVATAVPNLKADNVTIVDDRNHLLAAGGDSDSAMGVAGSARKSEIEDSVRKR 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + + + +G R V AE++ ++ Y+PD +V RS + + + Sbjct: 240 VMEIVEGVVGPGAARVMVTAEIDQTATTREQVEYNPDGQVVRSTSTNSGTETTADPNSAG 299 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 T N+P L S ++ + E +N+EI+T ++++L++AVVV+ Sbjct: 300 QTTATANIPGTQQA-PNLSTSGNSSQQDSEVTNFEISTTKTTEVKAPGEIKKLAVAVVVD 358 Query: 365 KGRLTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 G+ A + + I ++V AA G + RGD + ++++ F Sbjct: 359 GVETPSADGKAPPAYAPRSAEDMQRIQELVQAAVGYDQTRGDQVRVSNIRFSRGDFAAGT 418 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGK 477 + D I V + LLV FL L + N A G GG Sbjct: 419 DAKPPLFDFDKNDIMRAIEVAVLFIVALLVIFLIARPLLKFINGGGAAGGNFLGTANGGS 478 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + DNIA R +RI V S ++ ++ Sbjct: 479 QAALAGAAVTGPSISYQAADNIAATGLVPTQEQEQRIDIARIEGQVKASSVKKVSEFVDR 538 Query: 538 NEERFAKILRKWARS 552 + E ILR W Sbjct: 539 HPEESVSILRSWLHD 553 >gi|209545569|ref|YP_002277798.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533246|gb|ACI53183.1| flagellar M-ring protein FliF [Gluconacetobacter diazotrophicus PAl 5] Length = 547 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 127/551 (23%), Positives = 233/551 (42%), Gaps = 16/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + LGR ++ L V + + F LY +++ + + Sbjct: 1 MQNILAGLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L++A+I S +G+SI VP V AR+ LA GLP S GYELFDK + T F Sbjct: 61 LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSV 184 Q I RA+EGE+ R+I+ + G+ RVH+V+P F + ASV++ Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEI 241 +AI++LVAAAVP L +++++D+ G +L + G+ + A + + Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 ++ L LG + R+ + D + YDP+ +V RS + + + +S ++ Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTT--SDKSVNTE 297 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 TV N+P+ + + S + D++E+ +NYEI + + ++ R+S+AV Sbjct: 298 ASPNTTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ + G+ Q + + I + A G + RGD + + SM F+ + Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 T S + + ++ ++ L F+G+ + R I+ + L Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALAAGHLQEGLP 473 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 A G + N+ + I S I + ++ ++ IE + + Sbjct: 474 GI----AGHAGRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529 Query: 542 FAKILRKWARS 552 I+R W Sbjct: 530 SVLIIRNWLAE 540 >gi|260432137|ref|ZP_05786108.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis ITI-1157] gi|260415965|gb|EEX09224.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis ITI-1157] Length = 531 Score = 319 bits (817), Expect = 8e-85, Method: Composition-based stats. Identities = 140/549 (25%), Positives = 233/549 (42%), Gaps = 20/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q SL R + +I+A ++ + +A V SP LY LE I A Sbjct: 1 MQQIGTVWASLDRRKQIIVAGAAILVFLSVLAMSRVVTSPSMTLLYAGLEAGAAGDIVRA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + I G SI VP S + R+ LA++GLP++ N GYEL D ++ FG TS M Sbjct: 61 LDQRGVTYEIR--GGSIYVPVSKRDELRMTLASEGLPANG-NRGYELLDSLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI S + ARVHI F++ A + ++ A + Sbjct: 118 FDAAYWRAKEGELARTIVSSPHVSQARVHIANGSSNPFQRSVAPTASVYLVPAGARVTVE 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+AIR LVA+AV L DV V+DS G ++ E + + + Sbjct: 178 QAKAIRFLVASAVTGLAPEDVAVIDSNGAVIGPQE-----AVVATDTADDKARLLRERVL 232 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G N V + +T+ IRE +DP +V S + + + S + V Sbjct: 233 RLVEARVGPGNAVVEVSVDTVTETESIRERRFDPKGRVAISTDIEERSDSSRNQSSD--V 290 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S + E+ NYE++ + ++RL++AV+VN Sbjct: 291 TVASNLPDGDA--AGGDESNSTATQTRERVNYEVSETELEVHRVPGAIKRLTVAVIVNGT 348 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 R + G + + L + ++V++A G ++ RGD IT+ SM+ L + Sbjct: 349 RTVDASGTPVFEPMPEPELEALQELVASAVGFDAERGDVITLKSME-LPDLEPQGTLATA 407 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S + ++I V + +L++ + + L + A + P Sbjct: 408 SIWHSIHLDAMSLIQMAVLAIVSLVMGLFVIRPI--LTSAPVAALPPAANGPNAADAPFL 465 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + L ++ + + Q+R S+ + RL MI +E +IL Sbjct: 466 VGEIEDAAGQELTQLPAAPEQGSTTPAIAQAR-----SEDAVARLRSMIGDKQEETVEIL 520 Query: 547 RKWARSEIE 555 R W E Sbjct: 521 RSWLEESEE 529 >gi|221636057|ref|YP_002523933.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159] gi|221157932|gb|ACM07050.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159] Length = 530 Score = 319 bits (817), Expect = 8e-85, Method: Composition-based stats. Identities = 124/552 (22%), Positives = 219/552 (39%), Gaps = 37/552 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + L + R + + +V L + Y L+ L D I L Sbjct: 10 ESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSADDAAAIIDQL 69 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + + +++S++G++ISVP V K R+ LAAQGLP S G+ELFD+ +SFG+T F Q Sbjct: 70 RQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSG-TLGFELFDR-SSFGVTDFQQ 127 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 + RALEGE+ARTI + G+ +ARVH+V+P+ F TA+V+++ Sbjct: 128 RVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSDQQQPTTAAVVLQLKPGSRLTD 187 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 + + HLV+A+VP L VTV+D +G L + + L +A + + Sbjct: 188 EQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQRAFETAMAT 247 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSETSQ 301 + +A +G +N V A + D +Q+ +Y P+ RS + S Sbjct: 248 QLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERVQTSEGTASG 307 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 P V+ N+ + ++ + ++ +E NYE++ + K++RLS+AV Sbjct: 308 PIGIPGVDSNVGSYQ--EGAAQQNQQRSELRETTVNYELSRQVERVVQAPGKVQRLSVAV 365 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+N + + ++ +V+AA GI RGD +T++ + F S Sbjct: 366 VLNSAAV------------DPAVAEQVRDLVAAAAGIVPERGDQVTVSVVPFTTATAEES 413 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 L ++ LL + L + +L Sbjct: 414 AAQP-----TLMDRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPRYEVATQVLP 468 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 +A + + + S + L + + + Sbjct: 469 GAAAGAAAPSVAGGGAAGLPGQAEAALKPPSGPPP----------TLRELQELAKKDPAT 518 Query: 542 FAKILRKWARSE 553 A ++R W E Sbjct: 519 VAHVVRAWLNEE 530 >gi|162147460|ref|YP_001601921.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786037|emb|CAP55619.1| putative flagellar M-ring protein [Gluconacetobacter diazotrophicus PAl 5] Length = 547 Score = 319 bits (817), Expect = 8e-85, Method: Composition-based stats. Identities = 128/551 (23%), Positives = 234/551 (42%), Gaps = 16/551 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + S LGR ++ L V + + F LY +++ + + Sbjct: 1 MQNILASLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L++A+I S +G+SI VP V AR+ LA GLP S GYELFDK + T F Sbjct: 61 LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSV 184 Q I RA+EGE+ R+I+ + G+ RVH+V+P F + ASV++ Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEI 241 +AI++LVAAAVP L +++++D+ G +L + G+ + A + + Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 ++ L LG + R+ + D + YDP+ +V RS + + + +S ++ Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTT--SDKSVNTE 297 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 TV N+P+ + + S + D++E+ +NYEI + + ++ R+S+AV Sbjct: 298 ASPNTTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +V+ + G+ Q + + I + A G + RGD + + SM F+ + Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 T S + + ++ ++ L F+G+ + R I+ + L Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALAAGHLQEGLP 473 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 A G + N+ + I S I + ++ ++ IE + + Sbjct: 474 GI----AGHAGRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529 Query: 542 FAKILRKWARS 552 I+R W Sbjct: 530 SVLIIRNWLAE 540 >gi|91223211|ref|ZP_01258477.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] gi|91192024|gb|EAS78287.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] Length = 570 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 108/567 (19%), Positives = 220/567 (38%), Gaps = 31/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 17 DVTTKLKQIWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V K R+ LA++G+ + +G + + +S G Sbjct: 72 EIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLG 130 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + ++ + ++ Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELK 190 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 191 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +++ +I L +G NFR V A+L+ + + + D Sbjct: 251 SVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD---NAPVVRNEHTIHN 307 Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S N P V+ +V S + E Y + + T + ++ Sbjct: 308 NSVDQIALGVPGSLSNQPPVTGSGEVETSDSQNTNARSEVNRQYAVGSSVRRTQYQQGQI 367 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E+LS++V++N + ++ +I+ ++ A GI++ RGD++++ S +F Sbjct: 368 EKLSVSVLLNSKASPDG------VAWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFT 421 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 ++ + + + I ++ + L + F L L D E+ Sbjct: 422 PIEIDAPPALPWWQDPTVQQ----PIRYVIGGLLGLAMIFFVLRPLIMHLTGVDKPVPEL 477 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDL 529 P + T ++ + ++ S S L + Sbjct: 478 NFAEPQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLK 537 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 538 HLQLIANEEPERVAEILKQWVNINEHS 564 >gi|297617138|ref|YP_003702297.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM 12680] gi|297144975|gb|ADI01732.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM 12680] Length = 512 Score = 319 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 124/550 (22%), Positives = 231/550 (42%), Gaps = 64/550 (11%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + L + ++++ +L+ ++ + +Y+ LY L V D I+ L E Sbjct: 17 NRWSLLTLNQKVLISGAVLLTLVSLGMLLSSQTAKNYEPLYSGLSVEDAAAITKKLDELK 76 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I +R+SD GS+I VPS + R+ LA +GLP +G+ELF + SFG T + + Sbjct: 77 ISYRLSDEGSTILVPSEQKYQVRLQLAGEGLPK--GTAGFELF-QSTSFGETETDKRVKY 133 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAE 189 + AL+GE+ RTI+S+ I +ARVH+V+P+ + A TASV+++ + Sbjct: 134 LTALQGELVRTIESLDKIESARVHLVLPEPRLYVDQEAPATASVVLKVKIGEELTNREIS 193 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEIEM 243 I HLVA +V L +V V+D G LL+A+ + + +++ + ++ E + Sbjct: 194 GIVHLVANSVEKLKPENVVVVDQYGNLLSADIPSADSMASAELSVQQMAVKRQLEREKQQ 253 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L A LG V AELN D + +DP+ +V S +++ S + Sbjct: 254 AVQSMLDATLGPGKSVVRVNAELNFDEVEQYSQDFDPEQRVVVSKHTVEESNTSSNTGAA 313 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 ++ V+ N+P + S ++K E+ NYE + T ++R+++AV+V Sbjct: 314 ASPGVDTNVPTYQGTEGQGTSSS-TSEKTEQTVNYEGDKVETKTKVAPGAIKRMTVAVLV 372 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 ++G +S EI + V A G + +R D++ ++ M F + Sbjct: 373 DEGF--------------ESKREEIVEAVKNAVGADEKRNDSVYVSFMKFQTPTEETAPP 418 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 ++ A + + V L R+ Sbjct: 419 ASTWQ--------KYMLPAGLGATLVIAVLLFWLARRRK--------------------- 449 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + ++ I ++S + + + +I + +I+ N A Sbjct: 450 -AQEQEGFEALVDEEIPIESLVERELTPEEREKLKI--------REEIDKLIDENPADVA 500 Query: 544 KILRKWARSE 553 +I+R W E Sbjct: 501 QIIRTWLLEE 510 >gi|269103174|ref|ZP_06155871.1| flagellar M-ring protein FliF [Photobacterium damselae subsp. damselae CIP 102761] gi|268163072|gb|EEZ41568.1| flagellar M-ring protein FliF [Photobacterium damselae subsp. damselae CIP 102761] Length = 581 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 98/552 (17%), Positives = 217/552 (39%), Gaps = 27/552 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L E S++ + AL + I+ Sbjct: 43 LGNLDLLRQVILVLAVAICVSLIIMVMMWIKEPEMRPL-GNYETSELITVLDALDQKKIE 101 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+ ++ LA G + + G ++ K FG++ +++ Sbjct: 102 YQL--DGNTIRVPADQYSAIKLTLARDGWSAPEAQ-GDDILLKNMGFGVSQRLEQERLKL 158 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++AR I+ I + A+V + +P F + +A+V + + + ++I Sbjct: 159 SRERQLARAIEQIKQVRKAQVLLALPKQSVFVRNNQDASATVFLTLSSGATLGQQEVDSI 218 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKAL 249 +VA+AVP L VTV D G+LL++ + + K + + + I+ L Sbjct: 219 VDMVASAVPGLKPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQTLREKIDAIL 278 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG+ N+ S V ++ + + + +DP RS + +D S ++ Sbjct: 279 MPILGLGNYTSQVDVSMDFSSLEETQKQFDPSKPATRSEFILEDLNNS--NRVGGIPGAL 336 Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P + + +EE NYE++T + R +++V Sbjct: 337 SNQPPADSAIPQDVKDLQSGKSLSDGSVHREETRNYELDTTIRHKRSQTGTIARQTVSVA 396 Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ +T+ G+ D+ L +I +++ G + RGD + + SM F + Sbjct: 397 VDYKNITDPKTGKVTRVPVSDAELEKIRRLLMGGVGFSQARGDLLEVISMPFALPEELAL 456 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + S + LV +++ L A+R+L + +G ++ + Sbjct: 457 ANPPIWENPNFSSWIRWI---AAALVIIVMIIVLIRPAMRKLLYPNQTAEGIPLDENGVP 513 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 T + + + D S + + + + + ++ + Sbjct: 514 MLNHHGDGITLIGSDLDAG------DSLELSTSQLELPSLHRDEDLLKAVRALVANEPDL 567 Query: 542 FAKILRKWARSE 553 A++++ W Sbjct: 568 AAQVIKNWMSEN 579 >gi|91200223|emb|CAJ73267.1| similar to flagellar MS ring protein [Candidatus Kuenenia stuttgartiensis] Length = 584 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 117/587 (19%), Positives = 231/587 (39%), Gaps = 41/587 (6%) Query: 1 MAI-LDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + ++ Q + + I+ S+ L ++ + + P + LY +L Sbjct: 1 MNLDMNSFTGQLKNVWKEISFSHKFIMISLTLSFLIGIVGVMQWARKPDFGLLYGELSPK 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + I L EANI +RIS NG++I VP+ + + R+ A++GLP +GYEL DKV Sbjct: 61 ESGEIINHLREANIPYRISGNGTTILVPNDKIYEMRLKFASEGLPHEQ--TGYELLDKV- 117 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 FG + F+Q+I RA++GE+A+TI+ + + A+VH+ +P+ F + PTASV+++ Sbjct: 118 GFGSSDFIQKINYRRAIQGELAKTIKHLDFVDWAQVHLAIPEKSLFVEDEKPPTASVVLK 177 Query: 179 A--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSI 233 + +I HLV+++V L +VTV D+ G LL+ E + L I Sbjct: 178 LKTGGKLKPERVASIVHLVSSSVEGLIPENVTVTDTRGNLLSEKESPFSQTGASNDQLEI 237 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + I+ L +G V A+L+ ++I +DP+ +V + ++ Sbjct: 238 KKKIEEYYVAKAQDMLDRIVGAGKSVVRVSADLDFRHVDEKQIEFDPERRVPKVQTVTTK 297 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 ++ N+ + L S + +++ Q+ YE++ + Sbjct: 298 VSGGTPFSGGGVPGMQANL--NLSQSSMLQSSGSSEEEETAQTQYELSKVERMVSDHGAN 355 Query: 354 LERLSIAVVVNKGRLTEVLG----RSADQGKIDSYLAEINKIVSAATGIN-SRRGDTITI 408 L+RLS+AV+V+ + + + + I +V A G+N R D+ I Sbjct: 356 LKRLSVAVLVDGKYEKIESEDGKIQQTYVSRNNEEMKGIASLVKQALGVNMVSRNDSFEI 415 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++ F E + + + + L+ L +++++ Sbjct: 416 QNVQFYEADYAEEEAIL--KKEQQKEFMLKLAKNGSLGITVLMFLMFMLRSMKKIKKKAA 473 Query: 469 AK----------------------KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 G + IS + + Sbjct: 474 PTVEMEHFSAKGKSGKQGFAKMQHDDTAGRNKLFEELRISKERQGIQYTKEELEAAVEEM 533 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S N + + ++ +L ++ + + + L++W E Sbjct: 534 LAMEESENPEEIMEGMKREKKRKLILGHMQKDTDLTSTALKRWIEGE 580 >gi|269965409|ref|ZP_06179529.1| flagellar M-ring protein [Vibrio alginolyticus 40B] gi|269830055|gb|EEZ84284.1| flagellar M-ring protein [Vibrio alginolyticus 40B] Length = 583 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 108/567 (19%), Positives = 220/567 (38%), Gaps = 31/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 30 DVTTKLKQIWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V K R+ LA++G+ + +G + + +S G Sbjct: 85 EIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + ++ + ++ Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELK 203 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 204 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +++ +I L +G NFR V A+L+ + + + D Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD---NAPVVRNEHTIHN 320 Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S N P V+ +V S + E Y + + T + ++ Sbjct: 321 NSVDQIALGVPGSLSNQPPVTGSGEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQI 380 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E+LS++V++N + ++ +I+ ++ A GI++ RGD++++ S +F Sbjct: 381 EKLSVSVLLNSKASPDG------VAWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFT 434 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 ++ + + + I ++ + L + F L L D E+ Sbjct: 435 PIEIDAPPALPWWQDPTVQQ----PIRYVIGGLLGLAMIFFVLRPLIMHLTGVDKPVPEL 490 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDL 529 P + T ++ + ++ S S L + Sbjct: 491 NFAEPQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLK 550 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 551 HLQLIANEEPERVAEILKQWVNINEHS 577 >gi|330447943|ref|ZP_08311591.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492134|dbj|GAA06088.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 580 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 103/523 (19%), Positives = 201/523 (38%), Gaps = 28/523 (5%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S +Y LY + E D I L I +R+ + + V V K R+ LAA+G Sbjct: 62 WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI ++ I ARVH+ +P Sbjct: 122 I-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180 Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + A + + ++ + EAI +LV +V + +V+V+D G+LL+ Sbjct: 181 TLFVRHNAEAPTASVMVELKPGEDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLS 240 Query: 219 ANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 A+ + K L + ++ ++ L +G N+R V A+L+ Q + Sbjct: 241 ADIGSTEMGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETK 300 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 V D + S + N P V+ + S ++ E Sbjct: 301 EVVD---SAPVVKNEHRIENNSIDNIALGVPGSLSNKPPVTGEE-ENKDSKNTNERTEIN 356 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y + + T + KL +L+++V++N ++ +I+ ++ A Sbjct: 357 RQYALGSSVRHTQYQQGKLNKLNVSVLLNSTAAPNGS------AWTEAETQQISAMIKDA 410 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI++ RGD+++I S +F + + + + +I + L + F Sbjct: 411 VGISADRGDSLSILSFNFTPIAIEAPPAIPWWQDPTVQQPLRYMI----GGILGLSMIFF 466 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS-------SNQDI 508 L L D + E+ P + T +L+ + + Sbjct: 467 VLRPLITHLTGLDRGRKELTFAEEDIPQEYDENLKTRAEQEHEESLNERLAAKGIESANN 526 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ N + L + ER A++L++W Sbjct: 527 ALNASNDLLPPQGSPLEIQLKHLQLISNEEPERVAEVLKQWVN 569 >gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531] Length = 526 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 132/557 (23%), Positives = 227/557 (40%), Gaps = 52/557 (9%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVNRISVALSE 69 + + I+ LV + L F+ + P L+ +E D ++ L E Sbjct: 9 LALWKRFDKRQRYIMLGSALVILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLRE 68 Query: 70 ANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I + I +N G++I VP++ V +AR++LA QGLP N G+E+FD + G+T F Sbjct: 69 SKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPR--GNKGFEIFD-DSKLGVTEFQN 125 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVY 185 + ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R Sbjct: 126 RVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKPNTELTK 185 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSLSIVQAIQHE 240 K + I +L A +V L ++T++D TGK+L + + L + + +Q Sbjct: 186 KEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKGLGVKTITQLDMTRKMQDS 245 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRS 297 IE I L LG + V EL+ D + + P DS + RS + ++ Sbjct: 246 IEKKIQTLLDQTLGEGRAFARVSLELDFDDRLTDRQTFTPVVDDSGIVRSQQDISESYTG 305 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 ++ P V+ N+P + +KKE NYEIN + + R+ Sbjct: 306 SSTNPGGPAGVQSNVP---GYVEQESNANAAYEKKESTKNYEINEERQHVIASPGSIRRM 362 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AV+VN I + VS+A GIN RGDTI++ + F Sbjct: 363 TVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLPFSTEA 409 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + D R F + A++ ++ ++ L +RL Sbjct: 410 AERRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAVLMYRRKKRL-------------- 455 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 +A + + +A + + L LL +I+ Sbjct: 456 ------EREAAEEAQRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNQKLALLALIDS 509 Query: 538 NEERFAKILRKWARSEI 554 E A +++ W E Sbjct: 510 KPEEVALLVKTWLTEEE 526 >gi|320529385|ref|ZP_08030473.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399] gi|320138351|gb|EFW30245.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399] Length = 526 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 129/552 (23%), Positives = 225/552 (40%), Gaps = 52/552 (9%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + I+ L + L F+ + P L+ +E D ++ L EA I Sbjct: 12 WERFDKRQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKI 71 Query: 73 DFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + + D NG++I VP++ V +AR++LA QGLP N G+E+FD + G+T F + Sbjct: 72 SYEVQDGKNGTTILVPTTNVHEARLNLATQGLPR--GNKGFEIFD-DSKLGVTEFQNRVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188 ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R K Sbjct: 129 YLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPGTELTKKEI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243 + I +L A +V L ++T++D TGK+L + + L + + +Q IE Sbjct: 189 KGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEK 248 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETS 300 + L LG + V EL+ D + + + P D+ + RS + + ++ Sbjct: 249 KVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSST 308 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P V+ N+P + +KKE NYEIN + + RL++A Sbjct: 309 NPGGPAGVQSNVP---GYVEQESNANAQYEKKESTKNYEINEERQHVIASPGSIRRLTVA 365 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+VN I + VS+A GIN RGDTI++ + F + Sbjct: 366 VLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLPFSKEAAER 412 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + D R F + ++ ++ ++ L +RL Sbjct: 413 RAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRL----------------- 455 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 +A + + IA + + LL +I+ E Sbjct: 456 ---EREAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQALLALIDAKPE 512 Query: 541 RFAKILRKWARS 552 A +++ W Sbjct: 513 EVALLVKTWLSE 524 >gi|260901174|ref|ZP_05909569.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|308109395|gb|EFO46935.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] Length = 571 Score = 318 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 103/567 (18%), Positives = 213/567 (37%), Gaps = 32/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 17 DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 72 EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 130 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + ++ + ++ Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGETPSASVMLELK 190 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +L+ +V + V+V+D G+LL+A+ + K L + Sbjct: 191 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + + D Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 307 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 308 NSIDQIALGVPGSLSNQPPVTGD-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 366 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 367 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 420 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ + L + F L L D E+ Sbjct: 421 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 476 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529 P + T L+ + + + Sbjct: 477 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 536 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 537 HLQLIANEEPERVAEILKQWVNINEHS 563 >gi|313895975|ref|ZP_07829529.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str. F0430] gi|312975400|gb|EFR40861.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str. F0430] Length = 526 Score = 318 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 129/552 (23%), Positives = 225/552 (40%), Gaps = 52/552 (9%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + I+ L + L F+ + P L+ +E D ++ L EA I Sbjct: 12 WERFDKRQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKI 71 Query: 73 DFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + + D NG++I VP++ V +AR++LA QGLP N G+E+FD + G+T F + Sbjct: 72 SYEVQDGKNGTTILVPTTNVHEARLNLATQGLPR--GNKGFEIFD-DSKLGVTEFQNRVN 128 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188 ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M+R K Sbjct: 129 YLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPSTELTKKEI 188 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243 + I +L A +V L ++T++D TGK+L + + L + + +Q IE Sbjct: 189 KGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEK 248 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETS 300 + L LG + V EL+ D + + + P D+ + RS + + ++ Sbjct: 249 KVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSST 308 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P V+ N+P + +KKE NYEIN + + RL++A Sbjct: 309 NPGGPAGVQSNVP---GYVEQESNANAQYEKKESTKNYEINEERQHVIASPGSIRRLTVA 365 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+VN I + VS+A GIN RGDTI++ + F + Sbjct: 366 VLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLPFSKEAAER 412 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + + D R F + ++ ++ ++ L +RL Sbjct: 413 RAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRL----------------- 455 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 +A + + IA + + LL +I+ E Sbjct: 456 ---EREAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQALLALIDAKPE 512 Query: 541 RFAKILRKWARS 552 A +++ W Sbjct: 513 EVALLVKTWLSE 524 >gi|85711042|ref|ZP_01042102.1| flagellar M-ring protein [Idiomarina baltica OS145] gi|85694955|gb|EAQ32893.1| flagellar M-ring protein [Idiomarina baltica OS145] Length = 570 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 97/557 (17%), Positives = 206/557 (36%), Gaps = 26/557 (4%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + R +++ + + + + + + + L K+E + L Sbjct: 28 QSIVDKLANFDMLRQVVVILALAICVAIAIFIMLWAQESTFRPL-AKMETEQLVGTLDYL 86 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFM 126 NI++++ +G+ +SVP ++ L G+ S S G ++ FG++ + Sbjct: 87 DANNIEYKV--DGNVVSVPEENYDAVKLQLTRAGVDYGQSESNGSDILMSEPGFGVSQRL 144 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SV 184 + + + E ++AR I+ + + AARV + +P F + +P ASVM+ Sbjct: 145 ERERLIHSREIQLARAIEEMRAVSAARVLLAVPKENVFARREKQPKASVMLNVKGNQSLS 204 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIE 242 + +I +VA++V +L+ VTV D G+LL + S + + E Sbjct: 205 EEEIASIVDMVASSVTSLETSQVTVTDQNGRLLNSGSQSALAATNSREYQLERKREEEYL 264 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I+ L LG DN+ + V ++ + + +Y+PD RS + RS + Sbjct: 265 NKIDSILIPVLGYDNYTAQVDVTMDFTQSEKTQRLYNPDMPAIRSEMTVE--NRSAGTAV 322 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + +E NYE++ T + +ER Sbjct: 323 GGIPGALSNQPPLESNIPEQATGAGSQRDATGSMHREATRNYELDNTVSYTRSQSGTIER 382 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V VN+ T G Q LA I +++ G + RGDTI + S+ F + Sbjct: 383 LSVSVAVNQPMTTNADGEQVPQPASPEQLANIRRLLQGGIGFDLSRGDTIEVVSVPFAQL 442 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 +G + F ++ + L++ + + + + + Sbjct: 443 PDLGAGETAMWDEP----WFWRAARLVMGGLVILVLILAVVRPMLKKLINPTQELEDDAH 498 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + + L + + D +L + + + ++ Sbjct: 499 SMLEDDEMMGDETIDLLSSQFDESSVGFGPDGSLQLPDL------HKDEDLLKAVRALVA 552 Query: 537 INEERFAKILRKWARSE 553 E +++++ W + Sbjct: 553 NEPELSSQVVKAWLNED 569 >gi|260574387|ref|ZP_05842391.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2] gi|259023283|gb|EEW26575.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2] Length = 533 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 131/549 (23%), Positives = 228/549 (41%), Gaps = 18/549 (3%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + F ++L R +I+ + + + N+P LY L+ + A Sbjct: 1 MQNLFSLWSALDARRRIIVIGATIAMFLAVLGLSRMANTPSMALLYAGLDNRAAGEVVAA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + + G SI V + R+ LA +GLP+ + +GYEL D ++ FG TS M Sbjct: 61 LDQRGVAYEVK--GDSILVDVTQRDSLRMTLATEGLPTMGA-AGYELLDGLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + I AARVHI FR+ + + Sbjct: 118 FDAAYWRAKEGELARTILANPQIRAARVHIAQAPAQPFRRDVLATASVTVTTTTGSLPPL 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+A++HL+AAAV + DV+V+D+ G L+ A + Q E+ N+ Sbjct: 178 QAKALKHLIAAAVAGMQPEDVSVIDTVGGLIMAADDNTLTGNG----GQDRAAELRTNVE 233 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + LAA +G V ++ + + I E +DP +V S ++ S ++P V Sbjct: 234 RLLAARVGPGKSVVEVSVDVVTERESITERKFDPQGRVPISTDATEK--TSSATEPSGDV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P + T + E +N+E++ S + +LS+AV+V+ Sbjct: 292 TVASNLPQGNA--AAGGNGQSQTSETRELTNFEVSETSRELLRVPGAVRKLSVAVLVDGL 349 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 ++T G + Q + + LA + ++V++A G++ RGD +T+ S+ F + Sbjct: 350 QVTAADGTISWQPRPEEELAVLRELVASAVGLDETRGDVLTLKSLAFEPLAEAGTLAEAS 409 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F DI ++I V V L++ + + A+ G + L Sbjct: 410 MFADIGPIDLMSMIQLAVLAVVALVLGLFVIRPVLTNLPRRMAELPGPGAQLALPNGAGG 469 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 +D L + + + RL +IE + +IL Sbjct: 470 ENRVLTGEIDDGFTLPTMGFGDDVAE-------DEADANDPMSRLRRLIEERQAESVEIL 522 Query: 547 RKWARSEIE 555 R W +E E Sbjct: 523 RGWMETEEE 531 >gi|88858108|ref|ZP_01132750.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2] gi|88819725|gb|EAR29538.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2] Length = 574 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 86/561 (15%), Positives = 219/561 (39%), Gaps = 27/561 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F + + R + L + + + + + + P L + ++ + Sbjct: 30 EQKSGFLGALGGVDVLRQVTLIIALTICVAIAVFIIIWARQPDMRPL-GTMPTDELIQTL 88 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L +D+++ G++I VP + ++ +A +GL + NSG ++ + FG++ Sbjct: 89 DFLDAQKVDYKL--EGNTIYVPETGYQNIKLMMAREGL-DQAPNSGTDILMQDMGFGVSQ 145 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ + E ++ARTI+ + +V A+V + +P F + P+A+V++ Sbjct: 146 RLERERLKHSREQQLARTIEELQNVVRAKVLLALPKENVFARQEKSPSATVVLTLKRGRI 205 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240 + ++I ++A+AV L+ VTV D G+LL + + + + E Sbjct: 206 LNGEEVDSIVDIIASAVQGLEPARVTVTDQNGRLLNSGSQDSLAARSRKEYEVERKREQE 265 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ + +G+ N+ + V ++ + + + Y+PD RS ++ Sbjct: 266 YIEKIDSIMIPVVGLGNYTAQVDLVMDFSSVEETQKRYNPDLPAVRSEMTREENN--IGG 323 Query: 301 QPESAVTVEQNMPHVS------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 N P V+ + S + ++KE NYE++T + Sbjct: 324 LAVGIPGALSNQPPVNSAIPEKAGQGSASNSAPSRNQKEATRNYELDTTISHKRQQTGVI 383 Query: 355 ERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 R+S++V +N G ++ + + L+ I +++ G + +RGD + + ++ F Sbjct: 384 RRISVSVAINYNSTAGADGAQATREPRSQQELSNIRRLLQGGIGFDMQRGDALEVVTVPF 443 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 ++ + + + + F + ++ + +++ + + + D Sbjct: 444 VQPYIEDVAELPMWEQP----WFFKIARLVMGALVIIVLIIAVVRPMLKKLIYPDDTLES 499 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ S I + L + + + D +L + + + Sbjct: 500 YDDDAMSSGVDIGDSTLDMLNQTFDESAVGFSADGTLQLPDL------HGDEDLLKAVRA 553 Query: 534 MIEINEERFAKILRKWARSEI 554 ++ E +++++ W + Sbjct: 554 LVANEPELSSQVVKAWLTEDD 574 >gi|167644977|ref|YP_001682640.1| flagellar MS-ring protein [Caulobacter sp. K31] gi|167347407|gb|ABZ70142.1| flagellar M-ring protein FliF [Caulobacter sp. K31] Length = 547 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 131/549 (23%), Positives = 228/549 (41%), Gaps = 7/549 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + +F + G R+ L V I + A ++ + L ++ + + A Sbjct: 1 MDKFLSAIQRFGVGRLAALIGVAAGAIAVIAAVMMMMSKQPNELLLSNVDPKESAAATQA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A I + +GS+I V V AR + +GL +S S GYE+FD ++ G T F+ Sbjct: 61 LDTAGIKYETKSDGSTIYVARDKVNAARQLIFTKGLVTSGS-VGYEIFDTGSALGQTDFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q++ R RAL+GE+ RTIQ G+ AARVH+VMP F + +PTA+V + Sbjct: 120 QQLNRQRALQGELERTIQGWDGVRAARVHLVMPKRQLFEEDAEQPTAAVTVSMAREPSPD 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+++LVA +V + V V+D GK L+A E + A + I + Sbjct: 180 MVRAVQNLVAGSVAGMKPDRVNVIDQHGKTLSAGNDESLAGKMAQDAKSATEARIAKTVK 239 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + LG R V A+L+++ +E +DPD +V RS + + V Sbjct: 240 DMIDGVLGPGKARVNVTADLDLNRVTTQERKFDPDGQVIRSESTNAANNSETKNDDTGGV 299 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 T QN+P + S +D E +NYEI+ + T + + ++++AV ++ Sbjct: 300 TSTQNIPGQTPNGFQPLGS--KSDSNESVTNYEISESTKTTVQEPGAVRKVAVAVAIDGV 357 Query: 367 RLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 A + +A+I ++V A G + RGD +++ ++ F + + G Sbjct: 358 AAPPGKDGKPGAYTPRSAEEIAQIEQLVKTAVGFDQTRGDQVSVVNVRFPQPEDQGLGKA 417 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPP 483 + I V V LL+ + L+ L + G + Sbjct: 418 GL-LAGFDKNDIMRFIELGVLAVVALLILLFAVRPFLKSLMTPPTPLGLALNGPQVTRMV 476 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 +S T ++ + + A + R ++I V S R+ +E + + Sbjct: 477 TLSDGSTQEVIVDQSGASMALAAPSDMDQRIDIAKIEGQVKASSVKRVAEFVEKHPDESV 536 Query: 544 KILRKWARS 552 ILR W Sbjct: 537 AILRTWLHE 545 >gi|170725973|ref|YP_001759999.1| flagellar MS-ring protein [Shewanella woodyi ATCC 51908] gi|169811320|gb|ACA85904.1| flagellar M-ring protein FliF [Shewanella woodyi ATCC 51908] Length = 568 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 94/557 (16%), Positives = 217/557 (38%), Gaps = 27/557 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 S + R + + + + + + + + P + L K+ D+ ++ L + Sbjct: 27 LGSFGGVDMLRQVTMVLALAICLAVAVFVMLWAQEPEFRPL-GKMATEDMIQVLDVLDKN 85 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + ++I G + VP + ++ L+ +G+ S+S+++ Y + + FG++ M++ Sbjct: 86 KVAYKI--EGDVVKVPEEKYQEVKLMLSREGVDSASNSTDY--LSQDSGFGVSQRMEQAR 141 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAE 189 + E +AR I+ + + A+V + +P F + ++P+A+V+I A + + Sbjct: 142 LKHSQELNLARAIEELRSVTRAKVILAIPKENVFARNRSKPSATVVISARRAGLGQEEVD 201 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINK 247 +I +VA+AV L+ VTV DS G+LL + + + L +VQ + E + Sbjct: 202 SIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKESEYRNKVES 261 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L LG +NF S V ++ + ++PD RS +++ S Sbjct: 262 ILMPILGPENFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENSSNSGAI--GGIPG 319 Query: 308 VEQNMPHVSDRKVPLP--------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + + KE N+E++T T + R+S+ Sbjct: 320 ALSNQPPMEANIPQNALDGEQSEANKNPGSSHKEATRNFELDTTISHTRQQIGVVRRVSV 379 Query: 360 AVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 +V V+ G+ + D +A I +++ A G +++RGD I + ++ F++ + Sbjct: 380 SVAVDFKPGPAGEDGQVNRVPRTDQEMANIRRLLEGAVGFSTQRGDVIEVVTVPFMDQLI 439 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + ++ F I + + L + + + + D+ K Sbjct: 440 DEAPAPELWEQP----WFWRAIKLAMGGLVILALILFIVRPMLKKLIYPDSSNLPDEPKF 495 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 I + + L+ + + + + + + ++ Sbjct: 496 GDELAEIEDQYASDTLG----MLNRPDAEYSYNDDGSILIPDLHKDDDMIKAIRALVANE 551 Query: 539 EERFAKILRKWARSEIE 555 E ++++ W + + Sbjct: 552 PELSTQVVKGWLQDNEQ 568 >gi|116619481|ref|YP_821637.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus Ellin6076] gi|116222643|gb|ABJ81352.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus Ellin6076] Length = 570 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 122/574 (21%), Positives = 213/574 (37%), Gaps = 38/574 (6%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 K +L + + +A V + + + + L+ L D I L E+ Sbjct: 3 KILANLSARQRITIAVVTVAVAAGLYSFVQWRKEGDFHPLFTGLSAEDAAGIVQKLKESG 62 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 +++R+ + G S+ VPS+ + R+ +A GLP S G+ELFDKVN G T F + I Sbjct: 63 VEYRLPEGGGSVLVPSNKLADLRLTMAGIGLPKSG-RIGFELFDKVN-LGATEFTEHINY 120 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAE 189 RALEGE+ RT+ +++ + ARVH+ P F + ASV+ IR ++ Sbjct: 121 RRALEGELERTVMALAEVETARVHLTFPKDSVFLEAQQPAKASVLVRIRPGAKLAPQNVL 180 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-----EMERNILGKSLSIVQAIQHEIEMN 244 AI HLV +AV L G V+VLD G LL + +L ++ E+ Sbjct: 181 AITHLVGSAVEGLSPGAVSVLDMNGNLLNRPKAPGLQDGSEPSAATLDYRHQVETELLAK 240 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 +N L+ LG + FR V E + + E +DP V + + ++D+ T Sbjct: 241 VNATLSPLLGPEKFRVGVSLECDFTGGEQSEETFDPARSVMVTSQRTEDSVGGTT--AAG 298 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 +P + R T + E +Y+ + T + + ++S+AV+V+ Sbjct: 299 VPGTASTLPRPTSRPATGAN---KTVRTTENISYQSSRTVKKTHLPSGVVRKMSLAVLVD 355 Query: 365 KGRLTEVLGRS---ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 + E S L I +V+ TG + RGD + I ++ F Sbjct: 356 QDVSWEKDKNSFKRVLVPPSPEKLKVIRDLVAGITGFSQERGDQLVIETLPFETTLQLEP 415 Query: 422 GT---------VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 + + + ++V GL +RR A Sbjct: 416 PVAAVPVPPAKPGSPLPGLPIPLDRKTLLIAAGVAAAMIVFGAGLFVMRRKRRKQTATVD 475 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL------------QSRIN 520 ++ + A + + + + + + Sbjct: 476 MASRPTLPAAASQPGAAPSTELLTQGQIEEQLESQLAQRDALQAKMDAQALTSLKLAPVI 535 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++ L I E ++LR W R E Sbjct: 536 TKKAEVLAKHLREKIAKEPEISVQVLRTWIREEE 569 >gi|153836097|ref|ZP_01988764.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|260362945|ref|ZP_05775814.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|260880232|ref|ZP_05892587.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|260895349|ref|ZP_05903845.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|149750851|gb|EDM61596.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|308085629|gb|EFO35324.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|308092563|gb|EFO42258.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|308112147|gb|EFO49687.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] Length = 571 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 17 DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 72 EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 130 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + + ++ Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 190 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +L+ +V + V+V+D G+LL+A+ + K L + Sbjct: 191 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + + D Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 307 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 308 NSIDQIALGVPGSLSNQPPVTGE-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 366 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 367 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 420 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ + L + F L L D E+ Sbjct: 421 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 476 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529 P + T L+ + + + Sbjct: 477 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 536 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 537 HLQLIANEEPERVAEILKQWVNINEHS 563 >gi|296133049|ref|YP_003640296.1| flagellar M-ring protein FliF [Thermincola sp. JR] gi|296031627|gb|ADG82395.1| flagellar M-ring protein FliF [Thermincola potens JR] Length = 517 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 113/559 (20%), Positives = 210/559 (37%), Gaps = 54/559 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L + ++ R + +++ L + P Y L+ +L+ D + Sbjct: 5 LLQLKTKIVGLWNNMTRNQKIVIIVSALFLVGTLAVLVRGATRPDYAPLFTQLDPQDAGK 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L E I ++++D G++I VPS V + RI L+++G P+ G+E FD+ FG Sbjct: 65 TVEWLKENKIPYQLADGGTTILVPSKDVDQTRISLSSEGYPTGGV-VGFEAFDQT-KFGE 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 T + +RAL+GE+ RTI+ S + ARVHIV+P+ F + TA+V ++ Sbjct: 123 TDTDRRARFIRALQGELTRTIERFSEVDKARVHIVLPEPSLFLEEQKNATAAVWLQLKPT 182 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM------ERNILGKSLSIV 234 + + LVA +V L +VTV+D G +L+ + ++ + L I Sbjct: 183 KTLDENQVKGLVKLVANSVEGLSPENVTVVDMNGNILSESLDFSKEAQQQKLSMTQLEIQ 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + Q +++ ++ L +G+ V AEL+ D Q + D V + + + Sbjct: 243 KTFQADLQRSLQSMLEKVVGIGKVVCRVRAELDFDQIQKKTEN-YGDKHVLSEQKTEQSS 301 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S T+ P++ N+P S + + NY + + T + Sbjct: 302 SSSNTATPQNTPGTAGNIPGYVAT---GGNSNSQSSSSDVVRNYVHDKEETVQTVAPGSV 358 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS++V+++K I + V A GIN RGD +++ M F Sbjct: 359 KRLSVSVMIDK-------------AINQQQQKAIEEAVVNAAGINRDRGDQVSVIGMPFN 405 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + T+I LL+ + +R L + GE+ Sbjct: 406 TEYQQEMAREMA-----QADRKQTIILFGSLGAVLLLIIVAVILRVRMLKKEQLEELGEI 460 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L + + + ++ + Sbjct: 461 AT----------------------TPLPLKAMEEIIEIEEKELTPEEKEKIRIKEQVEKV 498 Query: 535 IEINEERFAKILRKWARSE 553 N A++L+ W E Sbjct: 499 AGENPADVAQLLKTWLAEE 517 >gi|315497627|ref|YP_004086431.1| flagellar m-ring protein flif [Asticcacaulis excentricus CB 48] gi|315415639|gb|ADU12280.1| flagellar M-ring protein FliF [Asticcacaulis excentricus CB 48] Length = 561 Score = 316 bits (810), Expect = 5e-84, Method: Composition-based stats. Identities = 144/562 (25%), Positives = 237/562 (42%), Gaps = 22/562 (3%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 G +R+ ++ V + + A + LY L++ + + I+ AL +A Sbjct: 1 MDFLKQFGLSRLAVIIGVSIGVAAVLAAIALNMTGKPQALLYSNLDLKEASEITAALDQA 60 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I ++ +GS++ V VG+ R+ LA++GLP++ S GYELFDK + G T F+Q + Sbjct: 61 GIKYQAKGDGSTLMVDRDTVGETRLMLASKGLPTAGS-VGYELFDKAPALGQTEFVQNLN 119 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAE 189 RALEGE+ARTI ++ GI +ARVH+VMP F++ A PTASV++ N + Sbjct: 120 NQRALEGELARTIATLKGINSARVHLVMPKRELFQEEAAAPTASVVVGLSNTELSGEQVR 179 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKA 248 AIR+LVA AVPNL VT++D +LL A E + + I+ + + Sbjct: 180 AIRNLVAGAVPNLKANAVTLVDDKNRLLAAGGEDDNLLGAGGAERKTEIEETLRKRVKDI 239 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 + +G R V A++++++ + YDPD +V RS R S + VT Sbjct: 240 VEGVVGPGAARVTVTADIDLNSLTREQTQYDPDGQVVRSTRTDTSTDSSTDNANNGTVTA 299 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + N+P + ++ E +NYEI+ +++L++AVVV+ Sbjct: 300 QANIPGGAAAPGQGTTGN-QSETTGELTNYEISNTKTTEVIAPGAIKKLAVAVVVDGTWT 358 Query: 369 TEVLGR--SADQGKIDSYLAEINKIVSAATGINSR-------RGDTITITSMDFLENQL- 418 G+ + + +I ++V AA G + R D + +T++ F + Sbjct: 359 PAADGKSPPTYAPRSAQDMQQIEELVRAAIGYTDQTATNPNGRKDELKVTNIRFARDAAG 418 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG------ 472 T D T I L+ LV LLV F L + N Sbjct: 419 LGGTTASAGMFDFTKDDIVTAIQWLILLVVALLVLFFVARPLLKFVNNGAVPAPGGVPAL 478 Query: 473 --EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G ++ + + SR ++I V S R Sbjct: 479 AGAGGAVQMVMGADGVPVAVPAGALDYQGVPGTGLALSPVDSRIDIAKIEGQVKASSVKR 538 Query: 531 LLHMIEINEERFAKILRKWARS 552 + +E + E ILR W Sbjct: 539 VSEFVERHPEESISILRSWLHD 560 >gi|29423531|gb|AAO73593.1| lateral flagellar FliF-like M-ring protein [Vibrio parahaemolyticus] Length = 584 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 30 DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 85 EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + + ++ Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 203 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +L+ +V + V+V+D G+LL+A+ + K L + Sbjct: 204 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + + D Sbjct: 264 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 320 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 321 NSIDQIALGVPGSLSNQPPVTGD-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 379 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 380 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 433 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ + L + F L L D E+ Sbjct: 434 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 489 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529 P + T L+ + + + Sbjct: 490 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 549 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 550 HLQLIANEEPERVAEILKQWVNINEHS 576 >gi|315179670|gb|ADT86584.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Vibrio furnissii NCTC 11218] Length = 579 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 99/526 (18%), Positives = 203/526 (38%), Gaps = 26/526 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E DV I L +I +R+ + + VP V + R+ LAA+G Sbjct: 61 WSSSQSFRPLYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI +++ + ARVH+ +P Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179 Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + ++ + ++A + EAI +LV +V + V+V+D G+LL+ Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239 Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 A+ + K L + ++ ++ L +G NFR V A+++ + + Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 + D S N P V+ K S + + E Sbjct: 300 EILD---NTPVVQNEHTVQNNSIDQIALGIPGSLSNQPPVTGEKPTQD-SQNSNARSEIN 355 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y + + T + ++++L+++V++N G D EI+ ++ A Sbjct: 356 RQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNGTG------WSDQEKTEISAMLMDA 409 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI++ RGD++++ S +F ++ ++ + + + ++ + + + F Sbjct: 410 VGISAARGDSLSLMSFNFTPIEIEAPPSIPWWQDPTVQQ----PLRYVIGGLLGMAMIFF 465 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 L L D + E+ P + T ++ + S L Sbjct: 466 VLRPLIMHLTGADRRSQELEFAPPPEEPYYENLQTREEREREDALNRRLEEKGIKASSGL 525 Query: 516 Q-----SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + L + ER A++L++W Sbjct: 526 DVSSDMLPPPGSPLEIQLKHLQLIANEEPERVAEVLKQWVNVNEHS 571 >gi|328469325|gb|EGF40271.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329] Length = 571 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 17 DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 72 EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 130 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + + ++ Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 190 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +L+ +V + V+V+D G+LL+A+ + K L + Sbjct: 191 PGEDLKSEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + + D Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 307 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 308 NSIDQIALGVPGSLSNQPPVTGD-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 366 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 367 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 420 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ + L + F L L D E+ Sbjct: 421 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 476 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529 P + T L+ + + + Sbjct: 477 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 536 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 537 HLQLIANEEPERVAEILKQWVNINEHS 563 >gi|167623379|ref|YP_001673673.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4] gi|167353401|gb|ABZ76014.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4] Length = 566 Score = 316 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 98/555 (17%), Positives = 216/555 (38%), Gaps = 25/555 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 S + R + + + + + L + + P Y L ++ +++ ++ L Sbjct: 26 LMGSLGGVDMLRQVTMILALAICLALAVFVMIWAQEPEYRPL-GQMSTAEMVQVLDVLDN 84 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + + I G + VP R+ L+ +GL ++ +N+ + +K + FG++ M++ Sbjct: 85 NQVKYEIQ--GDVVKVPEDKFQDVRMLLSREGLDNTDANNDF--LNKDSGFGVSQRMEQA 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSA 188 + E +AR I+ + + A+V + +P F + ++P+A+V++ + + Sbjct: 141 RLKHSQEQNLARIIEELKSVTRAKVILALPKENVFARNRSKPSATVVVSTRRSGLSQEEV 200 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246 ++I +VA+AV NL+ VTV D+ G+LL + + I + L IVQ + E + Sbjct: 201 DSIVDIVASAVHNLEPNKVTVTDANGRLLNSGTQDGSSAIARRELEIVQQKESEYRNKVE 260 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L LG +NF S V ++ + Y+PD RS + + S Sbjct: 261 SILMPILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPSLRSEMVVE--NNSNGGTSGGIP 318 Query: 307 TVEQNMPHVSDRKVPLPRS------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P ++ + + KE N+E++T T L R+S++ Sbjct: 319 GALSNQPPMASDIPQEVNAEETVTRNSGSTHKEATRNFELDTTISHTRQQIGTLRRVSVS 378 Query: 361 VVVNKGRL-TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V V+ G + + LA I +++ A G N++RGD I + ++ F++ + Sbjct: 379 VAVDFKNAPMAEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDVIEVVTVPFMDQLIE 438 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++ F V+ ++ + L++ + + + D+ V Sbjct: 439 AAPAPELWEQP----WFWRVLRLVLGALVILVLILAVVRPMLKKLVYPDS----VNMPDE 490 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + + L + N + + ++ Sbjct: 491 PQRGGELAEIEDQYAADTLGMLQRPEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEP 550 Query: 540 ERFAKILRKWARSEI 554 E ++++ W + Sbjct: 551 ELSTQVVKNWLLEDD 565 >gi|28901391|ref|NP_801046.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809938|dbj|BAC62879.1| putative flagellar M-ring protein [Vibrio parahaemolyticus RIMD 2210633] Length = 584 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 30 DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 85 EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + + ++ Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 203 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +L+ +V + V+V+D G+LL+A+ + K L + Sbjct: 204 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G NFR V A+++ + + D Sbjct: 264 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 320 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 321 NSIDQIALGVPGSLSNQPPVTGE-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 379 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + D+ A+I+ +++ A GI++ RGD++++ S +F Sbjct: 380 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 433 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ + L + F L L D E+ Sbjct: 434 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 489 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529 P + T L+ + + + Sbjct: 490 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 549 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 550 HLQLIANEEPERVAEILKQWVNINEHS 576 >gi|255264100|ref|ZP_05343442.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62] gi|255106435|gb|EET49109.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62] Length = 531 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 123/545 (22%), Positives = 220/545 (40%), Gaps = 23/545 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + SLG +I + + + ++P Y LY LE S + + Sbjct: 1 MQNIISVWKSLGARNQIISGLASVAVFLAVLFMTRVASTPTYALLYSGLESSASGEVIAS 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + I G SI V S+ + R+ LA+ GLP + GYEL D + FG TS M Sbjct: 61 LEAQSAAYEIR--GDSIFVDSAKRDQLRMTLASAGLPKP-TVQGYELLDTLTGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + I ARVHI F++ A + + + + Sbjct: 118 FDAAYWRAKEGELARTIVATPAIRTARVHISNGTSRPFQRNQATTASVTVNTGVAGLTTQ 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 +A+++LVA+AV + DV ++D L++ + + ++ I+ NI Sbjct: 178 QIKALQYLVASAVAQMSPEDVAIIDDQRGLVSGAGLASDPTTRTSE-----TENIKRNIE 232 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G N + + D + I E DP+S+V S ++ S T Q +V Sbjct: 233 RLLEARVGFGNAVVELNVQRTTDIETILERRVDPNSRVAISTET-EERSTSSTDQNGGSV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S + E+ N+E++ T +++R+++AV+V+ Sbjct: 292 TVASNLPDGDAAADSG-TSNSQNSESRERVNFEMSETQREVTRGPGQVQRITVAVLVDGV 350 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + G + + + + LA++ ++V++A G + RGD ITI S+ F E Sbjct: 351 NGLDSDGNTTIEPRSEEELADLRELVASAIGFDENRGDKITIRSLAF-EPLPVEGTVAGS 409 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S S + ++I V +++ + + + G + S Sbjct: 410 SKNLFDSLNLMSLIQIAVAASVAIVLGLFVVRPVLMSGRAYRPALIDDSGPLLDGEIDTS 469 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 ++ + + + + +RL +IE +E IL Sbjct: 470 LGLSATEIGEMKNVDGAVQVA------------DPSMPNDPVVRLRALIEERQEETVDIL 517 Query: 547 RKWAR 551 R W Sbjct: 518 RDWIA 522 >gi|225159031|ref|ZP_03725341.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2] gi|224802410|gb|EEG20672.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2] Length = 532 Score = 316 bits (808), Expect = 8e-84, Method: Composition-based stats. Identities = 123/553 (22%), Positives = 204/553 (36%), Gaps = 39/553 (7%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 LG + + L L I A + P Y LY +L D I AL Sbjct: 6 QSLVALWKQLGLNQRISLVVAALAVIGSVAALVIWSRQPDYQLLYGRLADKDAASIISAL 65 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +R S G S+ VP++ V + R+ LAA+GLP G+E+FDK FGL+ F+Q Sbjct: 66 QAQGVPYRASAGGGSVYVPANQVHRLRMDLAAKGLP-GGEGVGFEIFDKGQ-FGLSDFVQ 123 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRA-INPSVY 185 RAL+GE+ARTI + G+ ARV IV P+ +PTASV + Sbjct: 124 RTNYTRALQGELARTISQLDGVARARVMIVQPENRLLLIDQGVKPTASVFVELTGPRLDT 183 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIE 242 ++ +IR+LVA AV L V V+D G++L++ + + Q ++ Sbjct: 184 EAVNSIRNLVANAVQGLKPAQVAVVDQKGRVLSSELQDDPTLADASSQMRYRQQVEEYFA 243 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + L +G N V AE++ + E YDPD +V R+ ++D S ++ Sbjct: 244 KKVESLLLPVVGAGNAVVRVSAEIDTEAATRVEERYDPDGQVVRTQTSTEDVTNSSEARS 303 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V V N P + +K +YEIN TT + L+ AV Sbjct: 304 GGVVGVTANATTPPPADQARPTVTNDQTRKNRTLSYEINRTLTNTTRSPGTILGLTAAVF 363 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITITSMDFLENQL 418 + +A + ++ +A + ++V A G+ G + +T+ + F + Sbjct: 364 IAPRPPAAG--GAAPGPRTEAEIAALRQVVVNALGLRPSPGRRIEELVTLQEVPFQAAGV 421 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + Q+ + + V L+ R+ Sbjct: 422 DDR-IEQIRTETRVQGWIEAASRYVAVAVAVLIFFIFWRMLKRQH--------PAPVPVE 472 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 L PP ++++ + + L +I+ Sbjct: 473 FLDQPPSGDGTAGQPGAAATGLGGAASRPVLTPEM-----------------LNELIKQK 515 Query: 539 EERFAKILRKWAR 551 LR W Sbjct: 516 PANVGAALRDWMA 528 >gi|153831728|ref|ZP_01984395.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] gi|148872238|gb|EDL71055.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] Length = 556 Score = 316 bits (808), Expect = 9e-84, Method: Composition-based stats. Identities = 105/566 (18%), Positives = 218/566 (38%), Gaps = 31/566 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +++ Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 3 DVTNKIKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 57 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 58 EIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 116 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + ++ + ++ Sbjct: 117 TSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELK 176 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 177 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 236 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +++ +I L +G NFR V A++N + + + D Sbjct: 237 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NAPVVRNEHTIQN 293 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 294 NSVDQIALGIPGSLSNQPPVTGETPTND-SQNTNARSEVNRQYAVGSSVRRTQYQQGQVE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + ++ ++I+ ++ A GI++ RGD++++ S +F Sbjct: 353 KLSVSVLLNSQAAPDG------VAWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTP 406 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ + + + + ++ V L + F L L D E+ Sbjct: 407 IEIDAPPALPWWQDPTVQQ----PLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPAQELE 462 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530 P + T + + ++ + S L + Sbjct: 463 FAEPQEEPQYDNLQTREEREREELLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKH 522 Query: 531 LLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 523 LQLIANEEPERVAEILKQWVNINEHS 548 >gi|262173382|ref|ZP_06041059.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] gi|261890740|gb|EEY36727.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] Length = 585 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 100/570 (17%), Positives = 220/570 (38%), Gaps = 32/570 (5%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M ++++L Q + R L+L++V+ + + + + ++ LY + E D Sbjct: 28 MDKLINKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFD 82 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I L I +R+ + + V V + R+ LA +G+ + +G++ + +S Sbjct: 83 IGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSS 141 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 G + FM+ LEGE+ RTI S++ + ARVH+ +P+ F + ++ ++ Sbjct: 142 LGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLE 201 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233 + + EAI +LV +V + V+V+D G+LL+A+ E + K L Sbjct: 202 LKPGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEY 261 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++ +I L +G NFR V A+++ + E + D Sbjct: 262 QKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD---DTPVVRDEHTI 318 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 S N P ++ + S + E Y + + T + Sbjct: 319 QNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQ 378 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++++LS++V++N + +I+ +V A G++ RGD++++ S Sbjct: 379 GQIKKLSVSVLLNSQAAPNGK------AWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSF 432 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 +F + + T+ + + + ++ + + + F L L D + Sbjct: 433 NFTPIDIEAAPTIPWWQDPTVQQ----PMRYVIGGMLGIAMIFFVLRPLIMHLTGADRRV 488 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----RINSYVSKQS 527 E+ + + + + I + S + + + Sbjct: 489 QELEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLPGSPLEIQ 548 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557 L + ER A++L++W ++ Sbjct: 549 LKHLQLIANEEPERVAEVLKQWVNLNEHNK 578 >gi|156976202|ref|YP_001447108.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116] gi|156527796|gb|ABU72881.1| hypothetical protein VIBHAR_04973 [Vibrio harveyi ATCC BAA-1116] Length = 583 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 105/566 (18%), Positives = 218/566 (38%), Gaps = 31/566 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + +++ Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 30 DVTNKIKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 85 EIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + ++ + ++ Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELK 203 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 204 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +++ +I L +G NFR V A++N + + + D Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NAPVVRNEHTIQN 320 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 321 NSVDQIALGIPGSLSNQPPVTGETPTND-SQNTNARSEVNRQYAVGSSVRRTQYQQGQVE 379 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + ++ ++I+ ++ A GI++ RGD++++ S +F Sbjct: 380 KLSVSVLLNSQAAPDG------VAWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTP 433 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ + + + + ++ V L + F L L D E+ Sbjct: 434 IEIDAPPALPWWQDPTVQQ----PLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPAQELE 489 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530 P + T + + ++ + S L + Sbjct: 490 FAEPQEEPQYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKH 549 Query: 531 LLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 550 LQLIANEEPERVAEILKQWVNINEHS 575 >gi|315126013|ref|YP_004068016.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913] gi|315014527|gb|ADT67865.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913] Length = 575 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 121/574 (21%), Positives = 221/574 (38%), Gaps = 29/574 (5%) Query: 2 AILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + ++++ R + +++ + + + ++ +Y LY E D Sbjct: 15 NLKERVVNLSNKLNFGSSGDRSVATIALLATLVAATIVLILWTSAKNYVPLYGNQESYDK 74 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + I FRI + +I VP + ARI LAA+G+ +S G E S Sbjct: 75 ANILEILDKEQITFRIDTDSGNILVPQEKLADARITLAARGI-KASMPEGIENISDKVSM 133 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179 G + F++ + ALEGE+ARTI ++ GI ARVH+ +P F + + ASVM+ Sbjct: 134 GTSQFIESMQYQHALEGELARTIINMQGIRNARVHLAVPKRSLFVGRTEQKTAASVMVDL 193 Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSI 233 + EAI L+ +VP LD V+V+D GKLL+ + + K L+ Sbjct: 194 APGHELKPEQVEAIIALIIGSVPGLDSRSVSVVDQRGKLLSGDLFDTTPVGKETDKKLAF 253 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 ++ ++ IE + L LG NFR V ++++ + + DP + + Sbjct: 254 IEKVERNIEQRASIMLLPILGEGNFRIQVSSDVDFSVVEETREMVDPQN---VLTQEFIK 310 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + N P V + + + + + E + +E T + + Sbjct: 311 SDSTLDQLAAGIPGSLANEPPVPNEQAEDENNERTSQRSESKRQFENGRSVTHTQFEVGR 370 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++ +S++V++N+ G + LA + ++V ATG N RGD ITS F Sbjct: 371 IKNMSLSVLINEQVAGTADG------WSEEKLASLGEMVKKATGFNDARGDQFNITSFAF 424 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 +E ++ G + +V + +LL+ G+ L + Sbjct: 425 VEQKILAPGEGLEWWQ---MPELKEYARYIVGTLISLLLILFGVRPLVNHLIKGKSNDAN 481 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN------SYVSKQS 527 + + SA P D S + + N ++ Sbjct: 482 NAMATTDNEVKSVSATERQSSPLDEAINAKSQIENLTAKEGASEHQNMSLPQIGNDFEEQ 541 Query: 528 DLRLLHMIEINEERFAKILRKWARS--EIEDRYT 559 + + ER +++ W EIE R Sbjct: 542 IAHMQLLANKETERVTSVIKYWVEQGVEIESRKA 575 >gi|117620247|ref|YP_855904.1| flagellar MS-ring protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561654|gb|ABK38602.1| flagellar M-ring protein FliF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 560 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 89/561 (15%), Positives = 208/561 (37%), Gaps = 29/561 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q ++ R + L + + + + + + P L ++ + Sbjct: 13 EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYTTQELVKTL 71 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP--SSSSNSGYELFDKVNSFGL 122 L + I +++ +G S+ V + R+ L GL + +++ G ++ K +SFG+ Sbjct: 72 DYLDQQKIPYQV--DGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGV 129 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + M+ + E ++A I+ + A+V + +P F + +P+A+V++ Sbjct: 130 SQRMESERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGN 189 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + Sbjct: 190 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEL 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + I+ L LG DN+ + V L+ Q+ Y+PD RS ++ S Sbjct: 250 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEE--NSAN 307 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPR--------SLENTDKKEEQSNYEINTKSIATTHDN 351 N P + S +KE N+E++T Sbjct: 308 GSNGGVPGALSNQPPAASNIPQQATGPNAETTASSSGRSRKEATRNFELDTTVSHIRRQM 367 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + R++++V V+ T G+ + + L + +++S G + RGDT+ + ++ Sbjct: 368 GGIRRMTVSVAVDYKASTAADGKVTREPRTQPELDTLRRLLSGGLGFDVTRGDTLEVVAI 427 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F +L + + F + ++ +++ + + + DAK Sbjct: 428 PFNRPELESVAEAPLYEQP----WFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKP 483 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + ++ ++ + + + + + Sbjct: 484 EGELDFDNHTVLGGDDELSLLAAQAESEPVFGVRDGHLKLP-------DLHRDEDLLKAV 536 Query: 532 LHMIEINEERFAKILRKWARS 552 ++ + A+++++W + Sbjct: 537 RALVANEPDLAAQVIKEWVAN 557 >gi|260886631|ref|ZP_05897894.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|330839537|ref|YP_004414117.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|260863774|gb|EEX78274.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] gi|329747301|gb|AEC00658.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185] Length = 529 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 119/565 (21%), Positives = 234/565 (41%), Gaps = 49/565 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + + ++ + + + + +I+ + LV I + + + P L+ +E D Sbjct: 1 MAEWKERYLELWNNYSKRQRYMIIGAAALVFIAIVAGSIIYGGKPDMVPLFTNMEAKDAG 60 Query: 62 RISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++ L E +++ I + G ++I VP+ V R+ LAA+GLP N G+ELFD + Sbjct: 61 EVAAKLKENKVNYEIQEGGQGTTILVPAKSVDSTRLDLAAEGLPR--GNKGFELFD-DSK 117 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G+T F ++ ++AL+GE+ RTI+ I + ARVHIV+P+ ++K TAS+M++ Sbjct: 118 LGVTEFQNKVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKNEKPATASIMLKL 177 Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLS 232 K + I +L A +V L ++T++D +GK+L + + Sbjct: 178 KANMQLSKKEVKGIVNLAAHSVQGLTPENITIVDESGKILNDPDENGDDGVGQKTLTQME 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIR 289 + + +Q ++ N+ L A LG + EL+ D + +Y P +S + RS + Sbjct: 238 MTKKVQDNLQKNVQSLLDASLGEGKSFVRISVELDFDQKMTDSQIYTPVVDESGIVRSQQ 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + ++ ++QP + N+P S ++KE +NYE+N + Sbjct: 298 TTSESYAGTSTQPGGPAGTQSNVP---GYVEQNNNSQAQYERKENTTNYEVNEEKRKVVA 354 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + RL++AV+VN + I + V +A GIN RGDT+++ Sbjct: 355 SPGSIRRLTVAVLVNDDV-------------TQAQQESILRSVRSAAGINPDRGDTVSVE 401 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + D L R F + A + ++ ++ + L +RL Sbjct: 402 PLPFSTEARDKKLADEQAERDRLDREFYLQLAAFLLVIALIVGSILMYRRKKRLEQEAIE 461 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ +A + + + + Sbjct: 462 EQRRQEELERQRLAEERAAQIEAGEVTEEELTEEEQRQLTE-----------------MQ 504 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + MI E A ++++W + Sbjct: 505 AIEEMIMHTPEDAAMLVKQWLAGDD 529 >gi|269960163|ref|ZP_06174539.1| flagellar M-ring protein [Vibrio harveyi 1DA3] gi|269835134|gb|EEZ89217.1| flagellar M-ring protein [Vibrio harveyi 1DA3] Length = 583 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 105/566 (18%), Positives = 217/566 (38%), Gaps = 31/566 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++L Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 30 DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 85 EIVSVLETEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ + ARVH+ +P F + ++ + ++ Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELK 203 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 204 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +++ +I L +G NFR V A++N + + + D Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NAPVVRNEHTIQN 320 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + E Y + + T + ++E Sbjct: 321 NSVDQIALGIPGSLSNQPPVTGETPTND-SQNTNARSEINRQYAVGSSVRRTQYQQGQIE 379 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + ++ +I+ ++ A GI++ RGD++++ S +F Sbjct: 380 KLSVSVLLNSQAAPDG------VAWSEADKTQISTMIMDAVGISNTRGDSLSLMSFNFTP 433 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ + + + + ++ + L + F L L D E+ Sbjct: 434 IEIDAPPALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPAPELE 489 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530 P + T + + ++ + S L + Sbjct: 490 FAEPQVEPEYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKH 549 Query: 531 LLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 550 LQLIANEEPERVAEILKQWVNINEHS 575 >gi|223038711|ref|ZP_03609004.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267] gi|222880113|gb|EEF15201.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267] Length = 564 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 115/576 (19%), Positives = 227/576 (39%), Gaps = 28/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56 M + Q + +L + L+ A I++ + + + +S Y L+ Sbjct: 1 MDFKTAVQQIGQVYHNLSLRQRLVAAGSIVLVVGFLVFLSIYKSSNEGYDGYSVLFENTS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D I L + + ++I + G +I VP+S V + RI +A+ G+ G+E+FDK Sbjct: 61 AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDG-KVGFEIFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG T Q++ RALEGE+ARTI+S++ I A V I +P F + P+AS++ Sbjct: 119 -QEFGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETLFTERATPPSASIV 177 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS 232 + K I++LVAAAV NL V ++ G L + + + + + + Sbjct: 178 LNLKDGQSLNLKQIAGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237 Query: 233 IVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +H +E I L+ +G D + V + + + + +DP+S + Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGADKVVAKVTIDFDFARKDSQSESFDPNSVARSEQNIE 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + Q S+ ++ + N+ V + E K +NYEI+ K Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGL--QDNKMKELYSKSSSTTNYEISKKVERVKDQF 355 Query: 352 YKLERLSIAVVVNKGRLTEVLG------RSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 K++RLS AVVV+ + A ++ LA I+ ++ A + RGD Sbjct: 356 AKIKRLSAAVVVDGKYENKKDENGNPTKEIAYVPLDENQLARIDALIRQAICFDQNRGDE 415 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 IT+++ +F + SF ++ + + L +L +L+ + Sbjct: 416 ITVSNFEFQRQDGQTPASKVNSFFEL---YVVPFLPILKYLFAAVLLYIFYKKVIVPFMA 472 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 E + L + + A + + + + Sbjct: 473 KMLEDIKEEEPE--LPDSDDQLGDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLR---YD 527 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561 ++ + + + A +L+ +++ + + Sbjct: 528 VLLEKMKLIAQERSDEIAVLLQDLVKNDSDFSNRKD 563 >gi|258622516|ref|ZP_05717538.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|258585216|gb|EEW09943.1| flagellar M-ring protein [Vibrio mimicus VM573] Length = 585 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 101/570 (17%), Positives = 220/570 (38%), Gaps = 32/570 (5%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M ++D+L Q + R L+L++V+ + + + + ++ LY + E D Sbjct: 28 MDKLIDKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFD 82 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I L I +R+ + + V V + R+ LA +G+ + +G++ + +S Sbjct: 83 IGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSS 141 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 G + FM+ LEGE+ RTI S++ + ARVH+ +P+ F + ++ ++ Sbjct: 142 LGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLE 201 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233 + + EAI +LV +V + V+V+D G+LL+A+ E + K L Sbjct: 202 LKPGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGEVNAKYLEY 261 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++ +I L +G NFR V A+++ + E + D Sbjct: 262 QKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD---DTPVVRDEHTI 318 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 S N P ++ + S + E Y + + T + Sbjct: 319 QNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQ 378 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++++LS++V++N + +I+ +V A G++ RGD++++ S Sbjct: 379 GQIKKLSVSVLLNSQAAPNGK------AWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSF 432 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 +F + + T+ + + + ++ + + + F L L D + Sbjct: 433 NFTPIDIEAAPTIPWWQDPTVQQ----PMRYVIGGMLGIAMIFFVLRPLIMHLTGADRRV 488 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----RINSYVSKQS 527 E+ + + + + I + S + + + Sbjct: 489 QELEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLPGSPLEIQ 548 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557 L + ER A++L++W ++ Sbjct: 549 LKHLQLIANEEPERVAEVLKQWVNLNEHNK 578 >gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM 14796] gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM 14796] Length = 515 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 141/559 (25%), Positives = 238/559 (42%), Gaps = 50/559 (8%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + +L TR +L S + + +LF+ F+ P L+ L SD Sbjct: 1 MDRVRALFFSLRDRFLALSPTRRFLLLSGVSLVFILFVFGSLFLFKPQMAPLFTHLSSSD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L E I + + D+G++I VP V + R+ LAAQGLP S G+E+FDK N Sbjct: 61 GAAIVAKLKEQKIPYELKDSGTTILVPKDKVYELRLSLAAQGLP-EGSGVGFEIFDKNNL 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 F T F Q + VRAL+GE+ARTI I+G+ ARVHIV+P G F +ASVM+ Sbjct: 120 F-TTDFTQRVDYVRALQGELARTISQINGVEGARVHIVLPKTGVFVSQDIPASASVMLNL 178 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235 + K EAI LV+ AV L +VT++D+ G+LL+A N + + + I + Sbjct: 179 KPGQSISEKETEAIAFLVSRAVEGLKPENVTIMDTRGELLSADLNFNKSGLSQREFDIKR 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + E++ I L LG V AELN+ + ++++I Y P + SK Sbjct: 239 KYESEVQRKIQTMLDTMLGPGKSVVRVSAELNLASSEVKKITYSPVVGQNGIVISSKVTT 298 Query: 296 RSETSQPESAVTVEQNMPHV-SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + SQ + T +P + P P S ++ K EE +NY++N + + + + Sbjct: 299 DTSKSQNTTPQTPSATVPQGIPSYQTPAPTSSSSSRKTEEITNYDVNKQEEMIKNPSGDI 358 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RL+++V+V+ L + VS A GI +RGD++ + +M F Sbjct: 359 KRLTVSVIVDGTP-------------QTVNLQALTAAVSNAAGILPQRGDSVDVQAMPFD 405 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + I ++ V ++ + + LRR + + Sbjct: 406 RTYQQKE------LQAMQQAQLMDTIKSIAMWVAIVIAAIIAIIFLRRTIASLKKSQEQR 459 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G + + + + + + +A K++ + + Sbjct: 460 GAQILDATVGAEGIIHEKPLTPEELA-----------------------RKKARDEVERL 496 Query: 535 IEINEERFAKILRKWARSE 553 + A +++ W R E Sbjct: 497 AKEKPSEVANLIKTWLREE 515 >gi|254474533|ref|ZP_05087919.1| flagellar M-ring protein FliF [Ruegeria sp. R11] gi|214028776|gb|EEB69611.1| flagellar M-ring protein FliF [Ruegeria sp. R11] Length = 558 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 226/568 (39%), Gaps = 31/568 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q L + LI ++ I+ +A N+P LY LE + A Sbjct: 1 MQQIKNVWAGLDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS M Sbjct: 61 LDQRGTQYEVR--GGSIYVPATERDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + + ARVHI F++ + ++ +P + Sbjct: 118 FDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRTAEPTASVSVVPMGSPITPQ 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A AIR LV++AV L + +V V+D+ G L+ + E + QA I + Sbjct: 178 QANAIRFLVSSAVTGLSVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQA----IRERVM 233 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G N V E DT+ IRE DP+S+V S + + A S+ V Sbjct: 234 RLVEARVGHGNAVVEVSVETVTDTESIREKRVDPESRVAISTDVEERADSSQNQ--SGEV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S +T E+ NYEI+ ++RL++AV++N Sbjct: 292 TVASNIPDGDA--ASGDGSKASTSATRERVNYEISETEKEIIRGPGAIKRLTVAVLLNGV 349 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 T G + + + + L + +++SAA G ++ RGD IT+ SM+ V Sbjct: 350 ATTNAAGETVMEPRSEEELGALRELISAAVGFSADRGDVITLKSMEM-PTIEPQGTVVSS 408 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI- 485 S +D + ++I + TL++ + + A G P Sbjct: 409 SILDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPDGDDMGGLPELPA 468 Query: 486 ------------------SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + G + + + + Sbjct: 469 LGGGDFMANPNLGANLALDGEIQNGDGGFEPMGGMGMGSGLDELGGMGDLPALGGGQENP 528 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555 RL MI +E +ILR W E Sbjct: 529 VDRLRSMIGERQEETVQILRGWLEENEE 556 >gi|159045804|ref|YP_001534598.1| flagellar MS-ring protein [Dinoroseobacter shibae DFL 12] gi|157913564|gb|ABV94997.1| flagellar MS-ring protein FliF [Dinoroseobacter shibae DFL 12] Length = 558 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 129/567 (22%), Positives = 224/567 (39%), Gaps = 27/567 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + T LG LI + +L +A +P Y LY LE + + Sbjct: 3 MEQIRTTWTGLGLRNQLIAIAAVLGVFGALLALSRTALAPDYALLYSGLEPAAAGEVIAN 62 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + I ++ G I V + + RI LAA+GLP++ +GYEL D ++ FG TS M Sbjct: 63 LEQRGIAHQVRGTG--IYVDRAQQDRLRIALAAEGLPAAGG-AGYELLDSLSGFGTTSQM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI S + + +ARVH+ F + + A Sbjct: 120 FDAAYWRAKEGELARTIASSASVRSARVHVSAASSRPFEARKEPTASVFLTPARGSLSGG 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 A+A+R+LV++A+ + +V+++D+ +G +LT I +++ I Sbjct: 180 QADALRYLVSSAIAGMRPENVSIIDAVSGTMLTGEGPASAIAE-----QTTKADALKLRI 234 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L A +GV N V E D ++I E V+DP+ V S ++ +S + E + Sbjct: 235 ERLLEARVGVGNAFVEVNIETERDRERIVERVFDPNGTVPVSRETTESTLQS-SRDSEGS 293 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V+V N+P + T+ E+ NYE++ +RL++AV+VN Sbjct: 294 VSVASNLPDGDANAESAKDAQNETE-TRERINYEVSETQREIERGPGATKRLTVAVLVNG 352 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 G + + D +A++ ++V + G + RGD IT+ SM+ + + Sbjct: 353 IPSVSEDGTVSFTPRPDREMADLEELVKSTVGFDETRGDVITLRSMEMPGSAAPD-PVES 411 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 + +VI + TL + L + + Sbjct: 412 SGWFAPQPVDTMSVIQIAALALVTLFLGLFVLRPILKSAPAQAQLPAAETAGLPAPAGSA 471 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS---------------YVSKQSDLR 530 + A TG + + + L I++ + R Sbjct: 472 TRAGETGSNLVARLQQSAGTAAKEATPEVLSGEISTDASDVAAAARTLTSQDEERDPVTR 531 Query: 531 LLHMIEINEERFAKILRKWARSEIEDR 557 L +I+ E +IL W E R Sbjct: 532 LRQLIKERETETIEILSSWINENEEVR 558 >gi|224370787|ref|YP_002604951.1| FliF [Desulfobacterium autotrophicum HRM2] gi|223693504|gb|ACN16787.1| FliF [Desulfobacterium autotrophicum HRM2] Length = 571 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 132/580 (22%), Positives = 236/580 (40%), Gaps = 34/580 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M L + Q + R +++ V+L F A + N Y + Y L D Sbjct: 1 MNPL--VEQTINLYKEMPLARKILMGVVVLAMFGGFAAMFIWANKTEYKSAYSGLNQEDA 58 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L A +RI G++I VP+ V R+ +A G+P S G+E+FDK + F Sbjct: 59 AAIVDRLKTAKTPYRIEAGGATIMVPADQVYDVRLSMAKDGIPK-GSGVGFEIFDKTD-F 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T F+Q+I R RA++GE+ARTI++ + ARV IV P F + +P+AS+++ Sbjct: 117 GTTEFVQKINRRRAIQGELARTIRAFDEVKDARVMIVFPKDSVFVEETKKPSASILLELK 176 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILGKSLS 232 + A+ HLVA+A+ +L VT++D+TG++L A RN+ Sbjct: 177 SDLSEDKVAAVAHLVASAIEDLTPKLVTIVDTTGRILFEGKSEEEKAKIDARNLADSQYK 236 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + I L +G D V AE++ T E +YDP + +R + Sbjct: 237 YKMRYETTLAERIQTMLERIVGKDKAIVRVTAEMDFSTSNTNEEIYDPFERETTFVRSKQ 296 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++ +SA P V ++E TDKK + NYE++ ++ T Sbjct: 297 ILAETGQTRQDSAGIPSSVNPVVPPGGTADASAMEMTDKKNDTINYELSRRTRQTIKPMA 356 Query: 353 KLERLSIAVVVNKGRLTEVLG----RSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++R+S+A VV+ + + + + + IV A G N R D +++ Sbjct: 357 VVQRVSVAAVVDGKYEFKTDDSGNRSKTYVPRSQVEMQQFSDIVVKAMGFNETRQDQVSM 416 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 F +++ + + + I ++ ++ L +R + Sbjct: 417 ECFPFASIDELGVVEPELTGWRAVQKAYGRTIANILLVILL------FLFVIRPIIKTFQ 470 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + V +++ T P + +D+ Q F + ++R S+ Sbjct: 471 GIQSTVEKETLPGGGIDIIEDGTEPQPLAFVDMDADEQRTFLDEMDKEARDAYIDKMNSE 530 Query: 529 LRLLHMIEIN-EERFA-----------KILRKWARSEIED 556 R +M I E+ A I++ W E+ Sbjct: 531 ERAAYMNNIKIPEKAAYYARKDVIKATNIIKVWLSEVEEE 570 >gi|126176167|ref|YP_001052316.1| flagellar MS-ring protein [Shewanella baltica OS155] gi|304412519|ref|ZP_07394125.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|307307178|ref|ZP_07586916.1| flagellar M-ring protein FliF [Shewanella baltica BA175] gi|125999372|gb|ABN63447.1| flagellar M-ring protein FliF [Shewanella baltica OS155] gi|304349161|gb|EFM13573.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|306910417|gb|EFN40848.1| flagellar M-ring protein FliF [Shewanella baltica BA175] Length = 558 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 110/553 (19%), Positives = 207/553 (37%), Gaps = 30/553 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + R +I +++ V + + + + Y LY E D +++ Sbjct: 25 MTQKWHRFNRGD--RQVIALALLAVVVASVIVLMLWTATAGYRPLYGSQENVDTSQVLNV 82 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L ID+R+ N ++ V VG AR+ LAA+G+ + SG E D + G + FM Sbjct: 83 LDAEGIDYRLDANSGAVLVAEEQVGNARMILAAKGV-KAKVPSGMEALDNT-ALGTSQFM 140 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPS 183 ++ +LEGE+ARTI S+ + AARVH+ +P F + + + + Sbjct: 141 EQAKYRNSLEGELARTIMSLKLVRAARVHLAIPKQTLFIRQEPELPTASVMLQLDPNTRL 200 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQH 239 EAI +LVA +V L ++ V+D G+ L+ N+ K L + +++ Sbjct: 201 SESQVEAIVNLVAGSVTGLTASNIKVVDQDGRYLSENISGNQDLSQSRNKQLQYTRELEN 260 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + N + L LG +NF+ V A++N + + + DP + + S Sbjct: 261 SLVANASSMLEPVLGQENFQVRVTAKVNFNQVEETKESLDPQN---VVTQERTSVDDSSN 317 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 S N P + + ++ K+EE Y++ + +LE LS+ Sbjct: 318 SIAAGIPGALSNKPPQAGKAAADDKT--RNLKQEESRQYDVGRSVRHVRYQQMQLENLSV 375 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V++N ++ LA+ +V A G ++ RGD+ TI + +F Sbjct: 376 SVLINSATSQGAF-------NDEAQLAKFGNMVKDAIGFSAARGDSFTINAFEFTPTVTA 428 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 S ++ + ++ + + L L + Sbjct: 429 EFTPSPWW----QSENYQAYLRYIIGGILGFGLILFVLRPLVKHLTRTAQMTAPRIEPVA 484 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 LS P A+ + + + S+ L L + Sbjct: 485 LSAAPAG-ALDGPVADAASNQPHQLPSAEWLGSQGLPEP--GSPLTVKMEHLALLANKEP 541 Query: 540 ERFAKILRKWARS 552 R A+++ W Sbjct: 542 ARVAEVIAHWIGD 554 >gi|153001452|ref|YP_001367133.1| flagellar MS-ring protein [Shewanella baltica OS185] gi|217972616|ref|YP_002357367.1| flagellar MS-ring protein [Shewanella baltica OS223] gi|304409960|ref|ZP_07391579.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|307302327|ref|ZP_07582085.1| flagellar M-ring protein FliF [Shewanella baltica BA175] gi|151366070|gb|ABS09070.1| flagellar M-ring protein FliF [Shewanella baltica OS185] gi|217497751|gb|ACK45944.1| flagellar M-ring protein FliF [Shewanella baltica OS223] gi|304351369|gb|EFM15768.1| flagellar M-ring protein FliF [Shewanella baltica OS183] gi|306914365|gb|EFN44786.1| flagellar M-ring protein FliF [Shewanella baltica BA175] Length = 560 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 95/558 (17%), Positives = 213/558 (38%), Gaps = 24/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 EHKSGMMGNLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + + ++I + I VP + ++ L+ G+ S +++ + ++ + FG++ Sbjct: 76 DVLDKNKVKYQIDVD--VIKVPEDKYQEVKMMLSRAGVDSPAASQDF--LNQDSGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + ++P+A+V+I Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGL 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEY 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG DNF S V ++ + Y+PD RS + + Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVE--NNTTGGS 309 Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P D + +E N+E++T T + R Sbjct: 310 SGGIPGALSNQPPMESNIPQDATKATESATAGNSHREATRNFELDTTISHTRQQVGAVRR 369 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ G+ A + + L I +++ A G +S+RGD + + ++ F++ Sbjct: 370 ISVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMD 429 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + +++ F I + + L++ + + + D+ V Sbjct: 430 QLVEDLPALELWEQP----WFWRAIKLGIGALVILVLILAVVRPMLKRLIYPDS----VN 481 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + L++ + N + + ++ Sbjct: 482 MPEDGRLGNELAEIEDQYAADTLGMLNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALV 541 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 542 ANEPELSTQVVKNWLQDN 559 >gi|160876177|ref|YP_001555493.1| flagellar MS-ring protein [Shewanella baltica OS195] gi|160861699|gb|ABX50233.1| flagellar M-ring protein FliF [Shewanella baltica OS195] gi|315268373|gb|ADT95226.1| flagellar M-ring protein FliF [Shewanella baltica OS678] Length = 560 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 212/558 (37%), Gaps = 24/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 EHKSGMMGNLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + + ++I + I VP + ++ L+ G+ S +++ + ++ + FG++ Sbjct: 76 DVLDKNKVKYQIDVD--VIKVPEDKYQEVKMMLSRAGVDSPAASQDF--LNQDSGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + ++P+A+V+I Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGL 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEY 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG DNF S V ++ + Y+PD RS + + Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVE--NNTTGGS 309 Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P D +E N+E++T T + R Sbjct: 310 SGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRR 369 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ G+ A + + L I +++ A G +S+RGD + + ++ F++ Sbjct: 370 ISVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMD 429 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + +++ F I + + L++ + + + D+ Sbjct: 430 QLVEDLPALELWEQP----WFWRAIKLGIGALVILVLILAVVRPMLKRLIYPDSVSMPED 485 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G+ I + L++ + N + + ++ Sbjct: 486 GRLGNELAEIEDQYAADTLG----MLNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALV 541 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 542 ANEPELSTQVVKNWLQDN 559 >gi|21672359|ref|NP_660426.1| flagellar MS-ring protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008478|sp|Q8KA45|FLIF_BUCAP RecName: Full=Flagellar M-ring protein gi|21622963|gb|AAM67637.1| flagellar M-ring protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 556 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 109/576 (18%), Positives = 221/576 (38%), Gaps = 62/576 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + F R +L + ++ ++ ++ + SP Y LY L D I Sbjct: 14 KKKFNNFLSYFFKNSR----VLIILFVLAVITTVSISMWRKSPDYQVLYNNLSNEDGEMI 69 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L++ I +++S++ + VP V + R+H + P + GYE+ DK FG++ Sbjct: 70 IDQLNQMQIPYKLSEDSGQLLVPKDKVYELRLHFSENNSPHR--DIGYEILDKE-RFGVS 126 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--N 181 F ++I RALEGE+ARTI+ I+ + A++HI P F + +P+ SV++ Sbjct: 127 QFGEQINYQRALEGELARTIEKINVVKNAKIHIAFPKNSLFLEDKKKPSVSVILNLKSNQ 186 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHE 240 + AI HL+++++ +L + ++T++D GKLL + + I L + ++ Sbjct: 187 GLDHSQVNAILHLISSSICDLSIENITIIDQFGKLLNNSSLGLNQIDDLKLRYSEEVESR 246 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I L LG +N + V A++N ++ + + Y P++ + S+ + ++ Sbjct: 247 YRNRIKNILEPLLGFNNVYAQVTAQINFNSHEKTQEKYTPNTNYKNQAIRSRQSTVNDKI 306 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKK------------------------EEQS 336 + + + K ++ Sbjct: 307 NNRKEENKPDELFPQTSFSSNKDLNSTTYSNKKIKKSIIQNNQDNNILHSNSAISHDDTI 366 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 NYE+N T + +++RLS AV+VN + + +I +V A Sbjct: 367 NYELNHSLSHTKMNIGEIKRLSAAVIVNFVK----DKNGKSVPINVEQIKKIKNLVREAI 422 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 G + RGD++ + + F Q + +++ S ++T +TF Sbjct: 423 GYSKVRGDSVYVVNESFF--QKNKNSPIKLLKDSNQSNFYST------------FLTFTP 468 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 K K+ ++ + L+ D A + S Sbjct: 469 WFISLFFLFFLVKKCFFSSSKNNINNQSYKNKTEEDLLEKDTKAENISELKFSK------ 522 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + + ++ ++ N A I+R+W Sbjct: 523 ----TSNTDKLIHQICNISNQNPRIIASIIRQWMSD 554 >gi|163742558|ref|ZP_02149944.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10] gi|161384143|gb|EDQ08526.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10] Length = 574 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 136/572 (23%), Positives = 225/572 (39%), Gaps = 34/572 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + Q L + LI ++ I+ +A N+P LY LE + Sbjct: 13 NVQQIKNVWAGLDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDVVR 72 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 AL + ++ + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS Sbjct: 73 ALEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQ 129 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 M + RA EGE+ARTI + + ARVHI F++ + ++ +P Sbjct: 130 MFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRTAEPTASVSVVPMGSPITP 189 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 A AIR L+++AV L + +V V+D+ G L+ + E + I + Sbjct: 190 AQANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAG----TDDRSQSIRERV 245 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + + A +G N V E DT+ IRE DP+S+V S + + A S+ Sbjct: 246 MRLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQNQ--SGE 303 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 VTV N+P S +T E+ NYEI+ ++RL++AV++N Sbjct: 304 VTVASNIPDGDA--ASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNG 361 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 +T G + + + + L + +++SAA G + RGD IT+ SM+ V Sbjct: 362 VPITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSMEM-PTVEPQGTVVS 420 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 S D + ++I + TL++ + + A G P Sbjct: 421 ASIFDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPGGDAMDELPALG 480 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHS----------------------RNLQSRINSYV 523 ++ALD ++ + Sbjct: 481 GGGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGGLPALGGG 540 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 RL MI +E +ILR W E Sbjct: 541 GDNPVDRLRSMIGERQEETVQILRGWLEENEE 572 >gi|262276395|ref|ZP_06054204.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] gi|262220203|gb|EEY71519.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] Length = 586 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 102/552 (18%), Positives = 216/552 (39%), Gaps = 23/552 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + R LIL + + + I L + +V P L E ++ + L + ID Sbjct: 45 LGGMDIARQLILVAAVAICISLVVLLFMWVQEPEMRPL-GTYETEELIPVLDHLDQQKID 103 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +G++I VP+ +++L+ GL +S++ G ++ + FG++ ++ Sbjct: 104 YTL--DGNTIRVPAKDYSSIKLNLSRAGL-NSATEEGDDILMQDMGFGVSQQLERERLKL 160 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++A I+ I + ARV + MP F + +A+V + + ++I Sbjct: 161 SRERQLAAAIEKIRAVSKARVLLAMPKQSVFVRHNQEASATVFLTVRGTTQLGQEEVDSI 220 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249 +VA+AVP+L VTV D G+LL++ + + + + + I+ L Sbjct: 221 VDMVASAVPSLKPSRVTVTDQHGRLLSSGSQDPIASQRRKEYELERKQEQALREKIDAIL 280 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG+ N+ S V ++ + +DP + RS ++ ++ Sbjct: 281 IPVLGLGNYTSQVDVTMDFSAVEETRKRFDPATPSTRSEYTRENYNNTDYV--AGVPGAL 338 Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P V + + +E NYE++T + R +++V Sbjct: 339 SNQPPVDSSIPEDIQDLRNGGAGDKGSLSREATRNYELDTTISHRRGQTGTIARQTVSVA 398 Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ T G D+ L +I +++ G RGD + + ++ F+E ++ + Sbjct: 399 VDYIASTNPETGEITRTPVSDAELEKIRRLLVGGVGYTENRGDILEVLAVPFVEPEVVSL 458 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 G V + + + + LV ++V L A+ +L N +G + Sbjct: 459 GDVPIWEHENFNDWVRWL---AASLVIIVVVLVLIRPAMSKLINPTKDDDALLGPNGEML 515 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P + LD SN S S + + + + + ++ + Sbjct: 516 GPDGLPLSPDDDIGLIGADLDGSNTFGMSSS--NLNLPDLHKDEDLLKAVRALVANEPDL 573 Query: 542 FAKILRKWARSE 553 A++++ W ++ Sbjct: 574 AAQVVKSWVSND 585 >gi|120597294|ref|YP_961868.1| flagellar MS-ring protein [Shewanella sp. W3-18-1] gi|146294561|ref|YP_001184985.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32] gi|120557387|gb|ABM23314.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1] gi|145566251|gb|ABP77186.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32] Length = 558 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 112/554 (20%), Positives = 208/554 (37%), Gaps = 29/554 (5%) Query: 7 LLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + + R R +I +++ V + + + + Y LY E D +++ Sbjct: 22 IADMTQKWHKFNRGDRQVIALALLAVVVASVIVLMLWTATAGYRPLYGSQENVDTSQVLN 81 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L I +R+ N ++ V VG AR+ LAA+G+ + SG E D + G + F Sbjct: 82 VLEAEGIHYRLEANTGAVLVAEEQVGNARMLLAAKGV-KAKVPSGMEALDNN-ALGTSQF 139 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINP 182 M++ +LEGE+ARTI S+ + AARVH+ +P F + + + + Sbjct: 140 MEQAKYRHSLEGELARTIMSLKLVRAARVHLAIPKQSLFIRQEPELPTASVMLQLDPNTR 199 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQ 238 EAI +LVA +V L ++ V+D G+ L+ N+ K L + ++ Sbjct: 200 LSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRYLSENISGNQDLSQSRNKQLQYTRELE 259 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 H + N L LG DNF+ V A++N + + + DP + V + D+ S Sbjct: 260 HSLVANAASMLEPVLGHDNFQVRVTAKVNFNQVEETKESLDPQNVVTQERTSIDDSSNS- 318 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 N P ++ K+EE Y++ + +LE LS Sbjct: 319 --IAAGIPGALSNKPPQVGTAATDDKT--RNLKQEESRQYDVGRSVRHVRYQQMQLENLS 374 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V++N V ++ L + +V A G ++ RGD+ TI + +F + Sbjct: 375 VSVLINSAAGQGVFNN-------EAQLVKFGNMVKDAIGFSAARGDSFTINAFEFTPTVV 427 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 T S ++ + + ++ + + L L + + Sbjct: 428 AEIPTSPWW----QSENYQSYLRYIIGGILGFGLILFVLRPLVKHLTRTAQITAPSIEPA 483 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 LS ++ + N A + D + L + Sbjct: 484 ALSAASANALDGPTVDYAPNQAHQLPSADWLGSQGLPE---PGSPLTVKMEHLALLANKE 540 Query: 539 EERFAKILRKWARS 552 R A+++ W Sbjct: 541 PARVAEVIAHWIGD 554 >gi|163738046|ref|ZP_02145462.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107] gi|161388662|gb|EDQ13015.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107] Length = 561 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 136/571 (23%), Positives = 225/571 (39%), Gaps = 34/571 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q L + LI ++ I+ +A N+P LY LE + A Sbjct: 1 MQQIKNVWAGLDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + ++ + G SI VP++ + R+ LA++GLP++ GYEL D ++ FG TS M Sbjct: 61 LEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + + ARVHI F++ + ++ +P Sbjct: 118 FDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRTAEPTASVSVVPMGSPITPA 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A AIR L+++AV L + +V V+D+ G L+ + E + I + Sbjct: 178 QANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAG----TDDRSQSIRERVM 233 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G N V E DT+ IRE DP+S+V S + + A S+ V Sbjct: 234 RLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQNQ--SGEV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S +T E+ NYEI+ ++RL++AV++N Sbjct: 292 TVASNIPDGDA--ASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNGV 349 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 +T G + + + + L + +++SAA G + RGD IT+ SM+ V Sbjct: 350 PITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSMEM-PTVEPQGTVVSA 408 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S D + ++I + TL++ + + A G P Sbjct: 409 SIFDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPGGDAMDELPALGG 468 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHS----------------------RNLQSRINSYVS 524 ++ALD ++ + Sbjct: 469 GGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGGLPALGGGG 528 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 RL MI +E +ILR W E Sbjct: 529 DNPVDRLRSMIGERQEETVQILRGWLEENEE 559 >gi|308048752|ref|YP_003912318.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] gi|307630942|gb|ADN75244.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799] Length = 583 Score = 313 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 88/554 (15%), Positives = 208/554 (37%), Gaps = 25/554 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 S ++ R + L + + + + + + P Y L ++E ++ L + Sbjct: 43 LSSFGNIDVLRQISLILALAISLAIAVFLIIWAQEPSYRPL-GQMETQELIDTLDFLDQQ 101 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + +++ NG++ISVP R+ L GL + + + + FG++ M++ Sbjct: 102 KLPYQL--NGNTISVPEDRFADIRLMLTRNGLGPARPQQDF--LTQDSGFGVSQRMEQAR 157 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--A 188 + E +A ++ + + ARV + +P F + P+A+V++ + + Sbjct: 158 LKHSQEQTLASAVEELRSVQRARVILALPQQNVFARQQREPSATVVVTLNRGTELRQSEV 217 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNIN 246 +A+ +VA+AV L VTV D G+LL + + + L + + I+ Sbjct: 218 DAVVDIVASAVHGLKPARVTVTDQHGRLLNSGSQDGISAQARRELELRIQQEQLYREKID 277 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L LG+ + + V ++ + Y+PD RS L +D Q P Sbjct: 278 SILIPVLGIGRYSAQVDVTMDFSAVEETSRRYNPDMPAVRSEMLIEDNQSGS--GPVGIP 335 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ E N+E+++ T + R+++ Sbjct: 336 GALTNQPPIASEIPQQVEGAGQDERLASGRNRSEVTRNFELDSTISHTRQQVGTVRRVTL 395 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V V+ + G + ++ LA I +++ + G N+ RGD + + S+ F ++ Sbjct: 396 SVAVDHKPVAGADGATTMAPLSETELASIRRLLMGSVGFNAARGDVLEVVSVPFADDLAL 455 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + F + + +G L++ + + + + + K G Sbjct: 456 EPLNIPIYE----QGWFWRAVKWSLGALGLLVLFLVVVRPMVKRLLNPNEGKATEGATG- 510 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + L++ + D + + + ++ Sbjct: 511 --PGGDLAELEDQYAADTLGLLNTGDSDYSYAEDGSILLPDLHKDDDMLRAIRALVANEP 568 Query: 540 ERFAKILRKWARSE 553 + ++++ W + Sbjct: 569 DLSTQVIKSWLNED 582 >gi|315180474|gb|ADT87388.1| flagellar M-ring protein [Vibrio furnissii NCTC 11218] Length = 568 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 105/570 (18%), Positives = 213/570 (37%), Gaps = 42/570 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A L+ F+ R +++ ++ + + + +S Y LY D + Sbjct: 20 AALENAKSFWS-----SSQRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L ++ + + ++ + I VP+ V R+ LAA+GL SG++ + + G Sbjct: 75 QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178 + FM+ ALEGE+AR+I ++ I ARVH+ +P F++ A+ + V + Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQ 235 +I +LV+ A+ L +V V+D G+LL+ + + + + Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + + L LG NFR V A+++ +Q E Y + Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESY----GAPVMRSETIFND 309 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + S N P V+D + E + Y + + + H LE Sbjct: 310 ENSGSMALGIPGALSNTPPVTDGDTNTTPESR-NVRNEAKREYAVGGRVVHVQHQQGVLE 368 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +L+I+V+VN+ + +G D LA I ++ A G ++ RGD I ++S F+ Sbjct: 369 KLTISVIVNEH-------NATSEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ ++L+ L L L + D + Sbjct: 422 SAMKEVEPLAWYKDPSVFQ----AAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDESSDA 477 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY------------- 522 + + A + + S +++ Sbjct: 478 KALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLPESD 537 Query: 523 -VSKQSDLRLLHMIEINEERFAKILRKWAR 551 + L + + + +R +ILR W Sbjct: 538 SPLEIQIQHLKTIAQNDPQRVTEILRTWMN 567 >gi|163750550|ref|ZP_02157788.1| flagellar M-ring protein [Shewanella benthica KT99] gi|161329705|gb|EDQ00694.1| flagellar M-ring protein [Shewanella benthica KT99] Length = 567 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 93/554 (16%), Positives = 204/554 (36%), Gaps = 27/554 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 R + + + + + L + + P Y L K++ ++ ++ L + ID Sbjct: 29 FGGADMLRQITMILALAICLALAVFIMLWAQEPEYRPL-GKMDTQEMVKVLDVLDKNKID 87 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +RI + I VP ++ L+ +G+ +S ++ Y + + FG++ M+ Sbjct: 88 YRIDID--VIKVPEDQYQAVKLMLSREGIDGASRSNDY--LSQDSGFGVSQRMELARLKH 143 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIR 192 + E +AR I+ + I A+V + +P F + A+P+A+V++ + +A+ Sbjct: 144 SQELNLARAIEELRSINRAKVILAIPKENVFARNRAKPSATVVLNVRRGGLGQEEVDAVV 203 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS--IVQAIQHEIEMNINKALA 250 +VA+AV L VTV DS G+LL + + + Q + E + L Sbjct: 204 DIVASAVQGLIPTRVTVTDSNGRLLNSGSQDAVSARARRESDLAQQKEAEYRTKVQSILM 263 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 LG +NF S V ++ + Y+PD RS + + S Sbjct: 264 PILGPENFTSQVDVTMDFTAVEQTSKRYNPDLPALRSEMIVE--NNSNGGSASGIPGALS 321 Query: 311 NMPHVSDRKVPL--------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P + + + +E N+E+NT T + R+S++V Sbjct: 322 NQPPMESDIPQNALTTDAQLNSARRGSSHREATRNFELNTTISHTRQQVGTVRRISVSVA 381 Query: 363 VNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 VN G+ + + LA I +++ A G +++RGD + + ++ F++ + Sbjct: 382 VNYKTGTLGEDGQINRVPRTEQELANIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLIEEL 441 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 ++ F + + V L + + + + V Sbjct: 442 PAPELWEQP----WFWRALKLGMGGVIILALILFIVRPMLKRLIYP----ASVNIPDEPK 493 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + + + L+ + + + + ++ E Sbjct: 494 FGDELAEIEDQFASDTLGMLNRPEAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPEL 553 Query: 542 FAKILRKWARSEIE 555 ++++ W + + + Sbjct: 554 STQVIKGWLQQDEQ 567 >gi|126175128|ref|YP_001051277.1| flagellar MS-ring protein [Shewanella baltica OS155] gi|125998333|gb|ABN62408.1| flagellar M-ring protein FliF [Shewanella baltica OS155] Length = 560 Score = 313 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 95/558 (17%), Positives = 212/558 (37%), Gaps = 24/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 EHKSGMMGNLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + + ++I + I VP + ++ L+ G+ S +++ + ++ + FG++ Sbjct: 76 DVLDKNKVKYQIDVD--VIKVPEDKYQEVKMMLSRAGVDSPAASQDF--LNQDSGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + ++P+A+V+I Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGL 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEY 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG DNF S V ++ + Y+PD RS + + Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPALRSEMTVE--NNTTGGS 309 Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P D +E N+E++T T + R Sbjct: 310 SGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRR 369 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ G+ A + + L I +++ A G +S+RGD + + ++ F++ Sbjct: 370 ISVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMD 429 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + +++ F I + + L++ + + + D+ V Sbjct: 430 QLVEDLPALELWEQP----WFWRAIKLGIGALVILVLILAVVRPMLKRLIYPDS----VN 481 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + L++ + N + + ++ Sbjct: 482 MPEDGRLGNELAEIEDQYAADTLGMLNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALV 541 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 542 ANEPELSTQVVKNWLQDN 559 >gi|254466479|ref|ZP_05079890.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I] gi|206687387|gb|EDZ47869.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I] Length = 556 Score = 313 bits (800), Expect = 7e-83, Method: Composition-based stats. Identities = 134/566 (23%), Positives = 224/566 (39%), Gaps = 29/566 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + + LI ++ I+ +A + P LY LE + A Sbjct: 1 MQQIKNVWAEMDMRKRLIAVGATVIMILSVIAMSHVASKPSMTLLYAGLESGSAGDVVRA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + GSSI VPS+ + R+ LA++GLP++ GYEL D ++ FG TS M Sbjct: 61 LEQRGTQYEVR--GSSIYVPSTQRDELRMTLASEGLPANGGK-GYELLDSLSGFGTTSQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + + ARVHI + F++ + ++ +P Sbjct: 118 FDAAYWRAKEGELARTIVASPHVSQARVHIANTGLNPFQRTVEPTASVSIVPMGSPITPA 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A AIR LV++AV L + +V V+D+ G L+ + + + I + Sbjct: 178 QANAIRFLVSSAVTGLAVENVAVIDANGALI----GSSDATAAAGAGTDDRSQTIRERVM 233 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + + A +G N V E DT+ IRE + DP S+V S + + A S V Sbjct: 234 RLVEARVGQGNAVVEVSVETVTDTESIREKLIDPKSRVAVSTDVEERADSSTNQ--AGEV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S NT E+ NYEI+ ++RL++AV++N Sbjct: 292 TVASNIPDGDA--ASGQGSKANTSATRERINYEISETEKEILRGPGAIKRLTVAVLINGT 349 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 +T G + Q + + LA + +++SAA G ++ RGD IT+ SM+ + Sbjct: 350 AVTNDAGETVFQPRPEDELAAMRELISAAVGFDAERGDVITLKSMELPAVE-PQGTVATA 408 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG----------- 475 SF D L +++ + +L++ + + A G Sbjct: 409 SFFDNLYFDAMSLVQIGALALVSLILGLFVVRPILSNQATPVAALPSPGGGDLPGLPGIG 468 Query: 476 ------GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + + + + Sbjct: 469 GGGFMTAPDLGAGLALDGEIENNETGQFEPLGGLPAMGTGDMMGAIGLPAMGGGMDDPVD 528 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 RL +MI +E +ILR W E Sbjct: 529 RLRNMIGERQEETVQILRGWLEENRE 554 >gi|260768771|ref|ZP_05877705.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260616801|gb|EEX41986.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] Length = 568 Score = 312 bits (799), Expect = 9e-83, Method: Composition-based stats. Identities = 105/570 (18%), Positives = 213/570 (37%), Gaps = 42/570 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A L+ F+ R +++ ++ + + + +S Y LY D + Sbjct: 20 AALENAKSFWS-----SSQRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L ++ + + ++ + I VP+ V R+ LAA+GL SG++ + + G Sbjct: 75 QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178 + FM+ ALEGE+AR+I ++ I ARVH+ +P F++ A+ + V + Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQ 235 +I +LV+ A+ L +V V+D G+LL+ + + + + Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + + L LG NFR V A+++ +Q E Y + Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESY----GAPVMRSETIFND 309 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + S N P V+D + E + Y + + + H LE Sbjct: 310 ENSGSMALGIPGALSNTPPVTDGDTNATPESR-NVRNEAKREYAVGGRVVHVQHQQGVLE 368 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +L+I+V+VN+ + +G D LA I ++ A G ++ RGD I ++S F+ Sbjct: 369 KLTISVIVNEHS-------ATSEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ ++L+ L L L + D + Sbjct: 422 SAMKEVEPLAWYKDPSVFQ----AAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDESSDA 477 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY------------- 522 + + A + + S +++ Sbjct: 478 KALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLPESD 537 Query: 523 -VSKQSDLRLLHMIEINEERFAKILRKWAR 551 + L + + + +R +ILR W Sbjct: 538 SPLEIQIQHLKTIAQNDPQRVTEILRTWMN 567 >gi|260767966|ref|ZP_05876900.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260615996|gb|EEX41181.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] Length = 579 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 98/526 (18%), Positives = 202/526 (38%), Gaps = 26/526 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +S + LY + E DV I L +I +R+ + + VP V + R+ LAA+G Sbjct: 61 WSSSQSFRALYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + +G + + +S G + FM+ LEGE+ RTI +++ + ARVH+ +P Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179 Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + ++ + ++A + EAI +LV +V + V+V+D G+LL+ Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239 Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 A+ + K L + ++ ++ L +G NFR V A+++ + + Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 + D S N P V+ K S + + E Sbjct: 300 EILD---NTPVVQNEHTVQNNSIDQIALGIPGSLSNQPPVTGEKPTQD-SQNSNARSEIN 355 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y + + T + ++++L+++V++N D EI+ ++ A Sbjct: 356 RQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNG------TAWSDQEKTEISAMLMDA 409 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI++ RGD++++ S +F ++ ++ + + + ++ + + + F Sbjct: 410 VGISAARGDSLSLMSFNFTPIEIEAPPSIPWWQDPTVQQ----PLRYVIGGLLGMAMIFF 465 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 L L D + E+ P + T ++ + S L Sbjct: 466 VLRPLIMHLTGADRRSQELEFAPPPEEPYYENLQTREEREREDALNRRLEEKGIKASSGL 525 Query: 516 Q-----SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + L + ER A++L++W Sbjct: 526 DVSSDMLPPPGSPLEIQLKHLQLIANEEPERVAEVLKQWVNVNEHS 571 >gi|114765263|ref|ZP_01444395.1| flagellar M-ring protein [Pelagibaca bermudensis HTCC2601] gi|114542398|gb|EAU45426.1| flagellar M-ring protein [Roseovarius sp. HTCC2601] Length = 535 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 147/534 (27%), Positives = 245/534 (45%), Gaps = 16/534 (2%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91 + V +P Y LY L ++ R+ +L +A I R G+++SVP + Sbjct: 1 MVFAMFFGLSAVTTPDYVALYRDLSPAEAGRMVESLEQAGIRSRTDMAGTAVSVPGEDMA 60 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +AR+ LA GLP+ + G+E+FD+ + G+ +FMQ + R RA+EGE+AR+IQ+I G+ A Sbjct: 61 RARMLLAGAGLPNDGTP-GWEIFDEASGLGMNTFMQRVNRARAMEGELARSIQTIDGVEA 119 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211 ARVH+V+P+ F + RP+ASV++R + A AIR LVA+AVP+L VTVL Sbjct: 120 ARVHLVLPEREPFSRERPRPSASVIVRGSRQVGMRQARAIRSLVASAVPDLAPAQVTVLS 179 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 +TG+ + + + E S I+ + I + L+A +G N R V +L + Q Sbjct: 180 ATGETILSEDGEAGSEASLQSARAQIEDRLGQRIAQILSARVGAGNARVQVSVDLTTERQ 239 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 +RE YDPD +V RS ++ + + + V V ++P VP Sbjct: 240 VVREQTYDPDQRVVRSTETREETREDQ-TAAGGEVGVADDIPAALAADVPGNNRNTANS- 297 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391 E NYEI S T + +E++S+AV+VN + G + + L + + Sbjct: 298 TNEIVNYEIGGTSSETVREPGDIEKVSVAVLVNGIYNVQDGGAVDYEERSQEELQRLEAL 357 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 V +A G + RGD++ + S+ F++ + V SF L+ + T++ + L Sbjct: 358 VQSAIGFDEARGDSVEVVSLRFMDYSMDVGEPVSRSFAQTLTENTGTILRGVFALALVAA 417 Query: 452 VTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI-- 508 V LG+ L R+ + +G L P A TTG + A + + Sbjct: 418 VLALGVRPALNRVFDQPAIAEGGSADLPGLPPSGNLPATTTGESATASNAQGGGERPVYQ 477 Query: 509 ----------FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + + V + + +IE E ++R W Sbjct: 478 TGTVLDPLPPGADEMVELAAVQGGVPRGLINTVSELIEREPEGAITVVRSWLAE 531 >gi|302392396|ref|YP_003828216.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501] gi|302204473|gb|ADL13151.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501] Length = 524 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 138/563 (24%), Positives = 232/563 (41%), Gaps = 53/563 (9%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + + Q + +L +I++S +V I++ + + + P+Y L+ L + D Sbjct: 4 NLKQMIEQVKELWNNLDTKAKVIISSSAIVSIIVLLLVTNWASQPNYVTLFNDLTMKDAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L E ID+++ +G+ ISVP+ V + R+ LA++GLP + G+E+FDK G Sbjct: 64 AITKQLDEKQIDYKLGADGTKISVPAQKVHQVRLDLASKGLPQKGA-VGFEIFDKNQ-LG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180 T F Q++ RAL GE+AR+I + + A+V I P + ASVM++ Sbjct: 122 STDFEQQVNFYRALSGELARSIMHLQNVKFAKVQISAPRESLYLDKKKVVKASVMLKMKE 181 Query: 181 -NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGKSLSI 233 K E I +LVA++V +L +VTV+D G LLT + K L + Sbjct: 182 YAELDLKQVEGITNLVASSVEDLKPENVTVVDDRGNLLTAELNKEDKFNNTDFSPKLLEL 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRL 290 + +E +N L+ LG DN V A+LN D +Q+ Y+P D V RS + Sbjct: 242 ENDFESNMESELNTMLSKVLGPDNVVVRVNAKLNFDRRQMESRTYEPVNDDQGVVRSEQS 301 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 ++ + + P E N+P N DK+E +NYEIN K T Sbjct: 302 TEVSYSGQGDTPSGVPGTESNIPG----YEGGEEQSSNYDKEETTTNYEINEKIETYTQV 357 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +E++S+AV+V+K + I + V +A G ++ RGD ITIT+ Sbjct: 358 PGDVEKMSVAVMVDK-------------ELSPAQTESIRQSVESAVGYSAERGDQITITN 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +F + + R + + + ++ + LRRL + Sbjct: 405 FEFDRSLEKKMTAEMEAQKSAEQRRWIIIGIITILVLIIGFLI------LRRLRSGSGRA 458 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 G L T + K+ Sbjct: 459 GDGGQGAEELDVVVDDQGQTETAATEEKELSP-----------------EERKRKEMKEE 501 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + ++E E A++L+ W E Sbjct: 502 ISDLVEQQPEEVARLLKTWLAEE 524 >gi|157961189|ref|YP_001501223.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345] gi|157846189|gb|ABV86688.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345] Length = 566 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 99/555 (17%), Positives = 217/555 (39%), Gaps = 25/555 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + + R L + + + + + + + P Y L ++ +++ ++ AL + Sbjct: 26 IMGALGGVDMLRQLTMILALAICLAVAVFVMIWAQEPEYRPL-GQMSTAEMVQVLDALDK 84 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + + I G + VP ++ L+ +GL + +N+ + +K + FG++ M++ Sbjct: 85 NQVKYEIQ--GDVVKVPEDKYQDVKMLLSREGLDNQEANNDF--LNKDSGFGVSQRMEQA 140 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSA 188 + E +AR I+ + + A+V + +P F + ++P+A+V++ + + Sbjct: 141 RLKHSQEQNLARVIEELKSVTRAKVILALPRENVFARNRSKPSATVVVSTRRSGLSQEEV 200 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246 ++I +VA+AV NL+ VTV D+ G+LL + + I + L IVQ + E + Sbjct: 201 DSIVDIVASAVHNLEPNKVTVTDANGRLLNSGTQDGASAIARRELEIVQQKESEYRTKVE 260 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L LG +NF S V ++ + Y+PD RS + + S Sbjct: 261 SILMPILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPALRSEMVVE--NNSAGGTSGGIP 318 Query: 307 TVEQNMPHVSDRKVPLPRS------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P ++ + T KE N+E+NT T L R+S++ Sbjct: 319 GALSNQPPMAADIPQEVNAEESLAVSSGTSHKEATRNFELNTTISHTRQQVGTLRRVSVS 378 Query: 361 VVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V V+ G + + LA I +++ A G N++RGD I + S+ F++ + Sbjct: 379 VAVDFKNGPVSEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDIIEVVSVPFMDQLIE 438 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ ++ F + ++ + L++ + + + D+ V Sbjct: 439 DAPPQEMWEQP----WFWRAVKLVLGALVVLVLILAVVRPMLKRLVYPDS----VKMPDE 490 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + + L + N + + ++ Sbjct: 491 PQTGGELAEIEDQYAADTLGMLQRPEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEP 550 Query: 540 ERFAKILRKWARSEI 554 E ++++ W + Sbjct: 551 ELSTQVVKNWLLEDD 565 >gi|212634367|ref|YP_002310892.1| flagellar MS-ring protein [Shewanella piezotolerans WP3] gi|212555851|gb|ACJ28305.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3] Length = 531 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 99/545 (18%), Positives = 210/545 (38%), Gaps = 24/545 (4%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + + + + + L + + P Y L ++ ++ ++ L + I ++I Sbjct: 1 MLRQVTMILALAICLALAVFVMIWAQEPEYRPL-GQMSTQEMVQVLDELDKNKIKYQIQ- 58 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 G + VP ++ L+ GL +++N Y K + FG++ M++ + E Sbjct: 59 -GDVVKVPEDKYQDVKMMLSRAGLDQAAANDDY--LSKDSGFGVSQRMEQARLKHSQEQN 115 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSAEAIRHLVAA 197 +AR I+ + + A+V + +P F + ++P+A+V++ + ++I +VA+ Sbjct: 116 LARAIEELKSVSRAKVILALPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVAS 175 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 AV NL+ VTV DS G+LL + + I + L IVQ + E + L LG Sbjct: 176 AVHNLEPNKVTVTDSNGRLLNSGSQDGVSAIARRELEIVQQKESEYRNKVESILMPILGP 235 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 +NF S V ++ + Y+PD RS + + S N P + Sbjct: 236 ENFTSQVDVSMDFTAVEQTAKRYNPDLPALRSEMVVE--NNSNGGTTGGIPGALSNQPPM 293 Query: 316 SDRKVP-----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 + + KE N+E++T T L R+S++V V+ Sbjct: 294 NSDIPQEVGTETTSVSSGSSHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPA 353 Query: 371 -VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 G + + + LA I +++ A G N++RGD I + ++ F++ + ++ ++ Sbjct: 354 AEDGSVSRVPRTEQELANIRRLLEGAVGFNTQRGDMIEVVTVPFMDQLIEDAPAPEMWEQ 413 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 F + + + L + + + + D+ K K I Sbjct: 414 P----WFWRAVKLGLGTLVALAIVMFIISPMLKRIVYPDSAKLPEEPKMGDELAEIEDQY 469 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + L+ + + + + ++ E ++++ W Sbjct: 470 AADTLG----MLERPEAEYSYADDGSILIPDLHKDDDMIKAIRAIVANEPELSTQVVKNW 525 Query: 550 ARSEI 554 + Sbjct: 526 LIEDD 530 >gi|312884805|ref|ZP_07744497.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367457|gb|EFP95017.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 582 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 103/527 (19%), Positives = 204/527 (38%), Gaps = 26/527 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + ++ + LY + E D I L NI++R+ + + VP V + R+ LAA+G Sbjct: 64 WSSTQSFRPLYSQQESFDTGDIISVLEAENINYRLQEQNGQVLVPEGEVARIRMLLAAKG 123 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + + G + + +S G + F++ LEGE+ RTI S++ + ARVH+ +P Sbjct: 124 V-KAKLPMGLDSLQEDSSLGTSQFIETARYRHGLEGELIRTIISLNSVANARVHLAIPRQ 182 Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + ++ + +R + EAI +LV +V + V+V+D G+LL+ Sbjct: 183 TLFVRQDREAPSASVMLELRPGEELNSEQVEAIVNLVVGSVTGMKPEQVSVVDQYGRLLS 242 Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 A E + K L + ++ +I + L LG N+R V A++N + + Sbjct: 243 AEIGSEQAGKVNAKYLEYQKNVEKQIIQRASDMLTPILGPSNYRVQVSADMNFSQVEETQ 302 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 + D + S N P V+ P S + E Sbjct: 303 EILD---ATPVVQKEHTITNNSVDQIALGVPGTLSNQPPVTGE-APTQDSQNTNARAEIN 358 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 Y + + T + K+E+LS++V++N+ + L D +I+ +++ A Sbjct: 359 RQYAVGSSVRRTQYQQGKVEKLSMSVLLNESAAPDGL------AWTDDEKNQISTMLADA 412 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI + RGD+++I S F + ++ + + + ++ + + + F Sbjct: 413 VGITNDRGDSLSIMSFSFTPISIEAPVSLPWWQDPTVQQ----PMRYVIGGMLGMAMIFF 468 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS--- 512 L L + + P + T + + ++ S Sbjct: 469 VLRPLIMHLTGAQNQNQSDDSVAPQDEPSYDNLQTRAEREREEVLNRKLSERGIEASNGL 528 Query: 513 --RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 N + L + + ER A++L++W +R Sbjct: 529 DVGNDMLPPAGSPLEIQLKHLQLIADEEPERVAEVLKQWVNENEHNR 575 >gi|258624661|ref|ZP_05719596.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|258583053|gb|EEW07867.1| flagellar M-ring protein [Vibrio mimicus VM603] Length = 585 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 99/570 (17%), Positives = 216/570 (37%), Gaps = 32/570 (5%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M ++D+L Q + R L+L++V+ + + + + ++ LY + E D Sbjct: 28 MDKLIDKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFD 82 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + I L I +R+ + + V V + R+ LA +G+ + +G++ + +S Sbjct: 83 IGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSS 141 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 G + FM+ LEGE+ RTI S++ + ARVH+ +P+ F + ++ ++ Sbjct: 142 LGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLE 201 Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233 + + EAI +LV +V + V+V+D G+LL+A+ E + K L Sbjct: 202 LKPGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEY 261 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++ +I L + NFR V A+++ + E + D Sbjct: 262 QKNVEKQIIQRAADMLTPIVSPTNFRIQVAADMDFSQVEETEEILD---DTPVVRDEHTI 318 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 S N P ++ + S + E Y + + T + Sbjct: 319 QNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQ 378 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++++LS++V++N + +I+ +V A G++ RGD++++ S Sbjct: 379 GQIKKLSVSVLLNSQAAPNGK------AWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSF 432 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 +F + + T+ + + + ++ + + + F L L D + Sbjct: 433 NFTPIDIEAAPTIPWWQDPTVQQ----PMRYVIGGMLGIAMIFFVLRPLIMHLTGADRRV 488 Query: 472 GEVGGKSILSPPPIS----SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 E+ + + N + + + + Sbjct: 489 QELEFAEQEELIDENLQTREESEREEVLNRRLLEKGIAASSGLDIASDMLPLPGSPLEIQ 548 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557 L + ER A++L++W ++ Sbjct: 549 LKHLQLIANEEPERVAEVLKQWVNLNEHNK 578 >gi|323493122|ref|ZP_08098253.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546] gi|323312593|gb|EGA65726.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546] Length = 582 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 104/566 (18%), Positives = 215/566 (37%), Gaps = 28/566 (4%) Query: 5 DQLLQFFKSGTSL--GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + QF L R L+L++V+ + + + ++ + LY + E D Sbjct: 25 NAMHQFSAKVKQLWSNSQRNLVLSAVLAAIVAAIIVVALWSSTQSFRPLYSQQERFDTGE 84 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I++R+ + + V V + R+ LAA+G+ + +G + + +S G Sbjct: 85 IVSVLESEGINYRLQEKNGQVLVAEGEVARIRMLLAAKGV-KAKLPTGLDSLQEDSSLGT 143 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRA 179 + FM+ LEGE+ RTI S++ + ARVH+ +P F + + ++ + ++ Sbjct: 144 SQFMETARYRHGLEGELVRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELKP 203 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQA 236 EAI +L+ +V + V+V+D G+LL+A+ + K L ++ Sbjct: 204 GEELKPPQVEAIINLLVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLDYQKS 263 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 ++ +I L +G NFR V A++N + + + D Sbjct: 264 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NTPIVRNEHTITNN 320 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S N P V+ S + E Y + + T + ++E+ Sbjct: 321 SIDQIALGVPGTLSNQPPVTGEVPTQD-SQNTNARSEINRQYAVGSSVRRTQYQQGQIEK 379 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS++V++N+ + ++I+ +++ A GI +RGD+ +I S +F Sbjct: 380 LSVSVLLNEAAAPNG------TAWTEDEKSQISTMITDAVGIADQRGDSFSIMSFNFTPL 433 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + ++ + + + ++ + + + F L L D + E+ Sbjct: 434 AIEAPPSIPWWQDPTVQQ----PMRYVIGGMLGMAMIFFVLRPLIMHLTGADTRSQELEF 489 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR-----NLQSRINSYVSKQSDLRL 531 P + T + ++ + S N + L Sbjct: 490 ADPQDEPVYDNLQTREEREREEDLNRKLSEKGIAASSGLNVGNDMLPPPGSPLEIQLKHL 549 Query: 532 LHMIEINEERFAKILRKWARSEIEDR 557 + ER A++L++W R Sbjct: 550 QLIANEEPERVAEVLKQWVNVNEHSR 575 >gi|289548426|ref|YP_003473414.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484] gi|289182043|gb|ADC89287.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484] Length = 496 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 136/555 (24%), Positives = 234/555 (42%), Gaps = 64/555 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M L + L + LIL+ + ++ + +S Y LY L D+ Sbjct: 1 MDYRTLLRELKTKIEQLSTKQKLILSGAVAAGLISLLLMVLLASSARYVPLYSGLSQEDM 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + + L + + +++ +G S+ VP V R+ LAA+G+PS GYE+FDK N F Sbjct: 61 SAVLSELEKEGVPYKLGGDGRSVLVPEDKVRDIRLKLAAKGIPSKGV-VGYEIFDKSN-F 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 ++ F ++ RA+EGE+A+TI I G+ A+V+I MP F + +PTASV++R Sbjct: 119 AVSDFQNQVNFKRAVEGELAKTIMRIQGVEEAKVNIGMPQRSIFVREEEQPTASVLVRLK 178 Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237 + +AIR+LVA +VP LD +V V+D G+ LT+ E ++ + L I + Sbjct: 179 PGYELSPEQVKAIRNLVALSVPRLDPKNVVVIDDRGRDLTSLLGEEMDLTERELRIKREY 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + ++E + K L LGV N + V A++++ ++ +E +YDPD S + K+ Sbjct: 239 EEQVEKKLQKILEEALGVGNVKVRVSADIDLTRRESKEEIYDPDMTAVVSQQKKKERVLG 298 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 T N+P + +++ E +NYE++ K I T K+ RL Sbjct: 299 GTL--GGVPGTASNIPPATGV---GAGGQTLSERTETITNYEVSKKQIYTEEPLVKVRRL 353 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+ VVVN + L I ++V A GI+ RRGDTI++ ++ F Sbjct: 354 SVGVVVNSQ-------------LKNVNLDSIRELVQTAAGIDQRRGDTISVVAVPFHRPT 400 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 L + + + ++ L+ F L +RR + Sbjct: 401 LGEEKAKERVYWPY----------IVGGVLIASLLVFSLLVFMRRRKQVPLPTPPTAVPP 450 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + V + S + + + Sbjct: 451 VPETMVTEEIRVKAKEVA-------------------------------SLEAVAELAKQ 479 Query: 538 NEERFAKILRKWARS 552 ++ AKI++ W RS Sbjct: 480 EPQKVAKIIKSWLRS 494 >gi|167043569|gb|ABZ08264.1| putative Secretory protein of YscJ/FliF family protein [uncultured marine microorganism HF4000_APKG2K17] Length = 560 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 114/560 (20%), Positives = 223/560 (39%), Gaps = 40/560 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ D LQF SL + + + + + ++ ++ F N P + LY +E+ D Sbjct: 31 ALSDVRLQFQDFFGSLSLAKRITILVALGIVLIGMVSMIFVANQPSWAPLYSNMELGDAA 90 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L E I + ++ G +I V V +AR+ LA + + + S G+ S G Sbjct: 91 AIVEKLQENQIPYLLAPGGRTIMVEPHKVDQARLTLAKEKV-TPGSGVGFLDLFSTPSLG 149 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-I 180 T F Q + A EGE+AR I +I+ + +A+V + +P F TA++ + Sbjct: 150 ETEFQQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQEETTAAIALNLTS 209 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---IVQAI 237 + + K E I HLVA+AV L +V + D +G LL+ + + GK Sbjct: 210 SGAGRKQIETIIHLVASAVEGLSPRNVKITDQSGTLLSRGFSDTSASGKMNDNYSYKSRF 269 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++E+E I + + +G D R V A L D + I+E + DPD S ++ ++ Sbjct: 270 ENELEAKIVRQIEEVVGKDRVRVNVSATLRFDRRTIKEELVDPDQTSVVSEQVVDESSTG 329 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 S P V N+P + R+ ++ KK N+E + + I ++ RL Sbjct: 330 TRSVPVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIVLESAVGEVVRL 386 Query: 358 SIAVVVNKGRLTEVLGR-----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 S++V+++ R + + ++ I +V AA G N +RGD++ + +M Sbjct: 387 SVSVLLDNRRSQILDESGISLGRTNTPWTEAEKETIIGLVKAAMGFNEKRGDSVFVGNMP 446 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F E + + ++ + ++ ++ + + L + + + + + Sbjct: 447 F-EAAVEDDKVNEIEATRVRNKFILDIVRYVALGLAILSLIMFVIRPMVQRLSSKPEDLD 505 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + G + I ++L Sbjct: 506 LLMGMPATIGELEEEELEVPTERESGIP--------------------------PREKIL 539 Query: 533 HMIEINEERFAKILRKWARS 552 + + + + + ++ W R Sbjct: 540 EIAKQDPLKTSALIHTWLRE 559 >gi|163783983|ref|ZP_02178948.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880743|gb|EDP74282.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1] Length = 522 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 120/524 (22%), Positives = 226/524 (43%), Gaps = 48/524 (9%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96 + +Y LY L D ++ L E I +++ NGS I VP V R+ Sbjct: 39 FFIYSLSSKENYAVLYTNLSPEDAGQVLTVLQEEKIPYKVEGNGSIILVPKDKVYDVRLK 98 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 LA++G+P S S G+E+FD+ G+T F + I +RALEGE+ RTI+ ++ ++ A+V+I Sbjct: 99 LASKGIP-SGSTVGFEIFDE-PKMGITQFQENINYIRALEGELERTIRQLNAVIDAKVNI 156 Query: 157 VMPDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 MP F + +P ASV+I+ + +AI LV+ AVP L +VTV D+ G Sbjct: 157 AMPKESIFAREEDQPKASVLIKLAPGKDLTPEQVKAIVFLVSRAVPKLKPENVTVADNRG 216 Query: 215 KLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272 ++L+ E E K+L + + ++ +IE N+ L+ LG D E+ Sbjct: 217 RVLSDVLEETETAKADKTLQLKRKLERQIERNVQSMLSKALGSDKVVVRATVEVETGQLH 276 Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 ++ +YDPD S R K+ +++ N+P + D R L K+ Sbjct: 277 QKDELYDPDKVAIVSERRIKEEVKTKQKSEIGPPGTSTNVPPIMD--TGQDRYLVEKKKE 334 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQ--GKIDSYLAEI 388 + NY+++ I + +K++++S+ V+++ + + G + + + L + Sbjct: 335 DRTRNYDVSKSIINKSQPIFKIKKVSVGVLIDGKYQEIKDKNGNVSYKFIPRSKEELKQY 394 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448 +++ +A G + +RGD +TI S+ F + ++ + + ++ V Sbjct: 395 EELIKSAIGFDPKRGDKVTIVSVPFEKKP------------EVAVKEKTDIRKIILLSVI 442 Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508 +L L L L + + VG + V + Sbjct: 443 GILFLTLLLITLALILKARKKPETAVGYGIPPETLQGMATVREAEIE------------- 489 Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++LL ++E N + A +++ W + Sbjct: 490 -----------VGIEKEPEYIQLLKILEENPQIVANLVKTWIKE 522 >gi|119469985|ref|ZP_01612790.1| flagellar M-ring protein [Alteromonadales bacterium TW-7] gi|119446695|gb|EAW27968.1| flagellar M-ring protein [Alteromonadales bacterium TW-7] Length = 571 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 90/559 (16%), Positives = 216/559 (38%), Gaps = 23/559 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q + S + R + L + + + + + + P L K++ ++ Sbjct: 27 EQKSGYLSSLNGVDLLRQVTLVIALGICLAIAIFIIIWARQPDMRPL-GKMQTEELIETL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I++++ +G+ + VP + ++ + +GL SG ++ + FG++ Sbjct: 86 DFLDAQKIEYQV--DGNVVLVPETEYQNIKLLMTREGL-EQGPTSGSDIIMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ E ++ARTI+ ++ I ARV + +P F + +P+A+V++ Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRARVLLAIPKENVFARREKKPSATVVLTLKRGRS 202 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240 + +++ +VA+AV L+ VTV D G+LL + + + E Sbjct: 203 LDSEEVDSVVDMVASAVQGLEPARVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + Y+PD RS ++ + Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGGLA 322 Query: 301 QPESA-----VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 V N+P V+ + + + KE NYE++T + Sbjct: 323 VGIPGALTNQPPVNSNIPEVAGQGGAGSATSPSRTHKEATRNYELDTTISHKRQQTGVIR 382 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R+S++V V+ G + + L+ I +++ G + +RGD + + ++ F+ Sbjct: 383 RISVSVAVDYIPKVGENGETTMTPRSVEELSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +V + D F +I ++ + +++ + + + D E Sbjct: 443 EATDFDISVPLWEQD----WFMKIIRLVLGALVIIVLIMAVVKPMLKRLIYPDDTLEEYD 498 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 ++ + I + L + + A + D +L + + + ++ Sbjct: 499 EDALSAGVDIGDSTLDMLNKDFDSASIGFSSDGTLQLPDL------HGDEDLLKAIRALV 552 Query: 536 EINEERFAKILRKWARSEI 554 E +++++ W + Sbjct: 553 ANEPELSSQVVKAWLTEDD 571 >gi|74055034|gb|AAZ95839.1| FliF [Aeromonas hydrophila] Length = 570 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 90/564 (15%), Positives = 203/564 (35%), Gaps = 29/564 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q ++ R + L + + + + + + P L ++ Sbjct: 23 EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYSTQELVSTL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS--SSSNSGYELFDKVNSFGL 122 L + I + + G S+ V + R+ L GL + +SN G + K +SFG+ Sbjct: 82 DYLDQQKIPYEV--EGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGV 139 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + M+ + E ++A I+ + A+V + +P F + +P+A+V++ Sbjct: 140 SQRMETERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGN 199 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + Sbjct: 200 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEV 259 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + I+ L LG DN+ + V L+ Q+ Y+PD RS ++ S Sbjct: 260 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEE--NSAN 317 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLE--------NTDKKEEQSNYEINTKSIATTHDN 351 N P + +KE N+E++T Sbjct: 318 GSSGGVPGALSNQPPAASNIPQQATGPNADASAAASGRSRKEATRNFELDTTVSHIRRQM 377 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + R++++V V+ T G+ + + L + +++S G + RGDT+ + ++ Sbjct: 378 GGIRRMTVSVAVDYKSATAADGKVTREARTQPELDTLRRLLSGGLGFDVTRGDTLEVVAI 437 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F +L N + F + ++ +++ + + + DA+ Sbjct: 438 PFNRPELENVAEAPIYEQP----WFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDARP 493 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ ++ + + + + + Sbjct: 494 EGDLDLDNSIVLGGDDELSLLAAQAESEPVFGVRDGHLKLP-------DLHRDEDLLKAV 546 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 ++ + A+++++W ++ Sbjct: 547 RALVANEPDLAAQVIKEWVTNKDA 570 >gi|56460308|ref|YP_155589.1| flagellar MS-ring protein [Idiomarina loihiensis L2TR] gi|56179318|gb|AAV82040.1| Flagellar basal body M-ring protein [Idiomarina loihiensis L2TR] Length = 570 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 95/555 (17%), Positives = 202/555 (36%), Gaps = 27/555 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 + R +I+ + + + + + + Y L +LE ++ + Sbjct: 31 IMTMLGNFDMLRQVIVVLALAICVAIAVFIMLWAQESTYRPL-GQLETEELISTLDYMDA 89 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS-SSNSGYELFDKVNSFGLTSFMQE 128 I++++ G+++SVP ++ L G+ S+N+G E+ FG++ ++ Sbjct: 90 NGIEYQV--EGNTVSVPEENYDAIKLQLTRAGVDYGNSTNNGSEILMSEPGFGVSQRLER 147 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186 + + E ++AR I+ I + AARV + +P F + P ASVM+ + Sbjct: 148 ERLIHSREVQLARAIEEIKKVSAARVLLAVPKENVFARREKEPKASVMLNVRGGTSLSEE 207 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMN 244 +I +VA++V L+ VTV D G+LL + S Q + Sbjct: 208 EVASIVDMVASSVTGLNTESVTVTDQAGRLLNSGSQSALAAKSSREYQIEQKREEAYLEK 267 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I+ L LG DN+ + V ++ ++ + ++PD RS + RS S Sbjct: 268 IDSILIPVLGYDNYTAQVDVTMDFTQREETQRQFNPDMPAIRSEMTVE--NRSMGSAIGG 325 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLS 358 N P + +E NYE++ T + ++RLS Sbjct: 326 IPGALTNQPPLDSDIPEEAGDGTAGGGATGSTHREATRNYELDNSVTYTRNQTGTIKRLS 385 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V VN +T G Q + +A I +++ G + RGD+I + S+ F + Sbjct: 386 VSVAVNHEAITNEAGEGETQARSAEEIANIRRLLQGGLGFDINRGDSIEVVSVPFAQLPD 445 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 +G V F ++ + +++ + + + ++ + Sbjct: 446 LGAGETPVWEEP----WFWRAFRLVMGALVIMVLILAVVRPMLKKLMNPESGVEDDADAF 501 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + D A+ + + + + ++ Sbjct: 502 SDEESMGDETIDLLSSQFDESAVGFGAD-------GSLQLPDLHKDEDLLKAVRALVANE 554 Query: 539 EERFAKILRKWARSE 553 E +++++ W + Sbjct: 555 PELSSQVVKAWLNED 569 >gi|225849149|ref|YP_002729313.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense Az-Fu1] gi|225643430|gb|ACN98480.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense Az-Fu1] Length = 534 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 118/565 (20%), Positives = 234/565 (41%), Gaps = 46/565 (8%) Query: 1 MAI-LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLYVKLEV 57 MA+ +Q+ Q + I++ +I + +++ ++ + Y LY L Sbjct: 1 MAVDFNQIKQKVGEFLKDKKNLKYIVSGLIGLFLVVILSIVLLKSFHKEDYAVLYSGLSP 60 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 D + ALS+ NI +++ NG+ I VP V AR+ LAA+GLP S G+E+F + Sbjct: 61 DDAGNVLTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLP-SGKVVGFEIF-EE 118 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 G T F + + +RA+EGE+ RTI+ + ++ A+V+I MP F + ASV+I Sbjct: 119 PKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNISMPKDSLFVREDEEAKASVII 178 Query: 178 RAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLS 232 + + +AI LV+ AVP L +VTV+D+ G++L+ E K++ Sbjct: 179 KLWPDKDLTKEQIKAIVFLVSHAVPKLKPENVTVVDNRGRVLSDLIDENVSEASGDKTVE 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + ++ ++E +I LA +G + EL ++ +YDPD S R K Sbjct: 239 LKRKLEKQLEKDIQSMLAKVVGPERVVVKASVELETGKVNQKDEIYDPDKVAVVSERKIK 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ E + + N+P V + + +K + +NY+++ I T + Sbjct: 299 ESETEEANTINAPPGTPTNVPPVMNT-PIFGGGGKKKEKSDITTNYDVSKSMIETQKPLF 357 Query: 353 KLERLSIAVVVN--KGRLTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++++S+ V+++ + + G + + L ++ +A G + RGD +T+ Sbjct: 358 VIKKVSVGVMIDGKYKEVKDKDGNVKLEFEPRSPQELQSYENLIKSAIGFDPNRGDQVTV 417 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S+ F + Q + + + + + Sbjct: 418 ISVPFESLETQKQEVKQANIIQYI------------------------------IAGLLG 447 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + +L +P+ + + Q + + + + Sbjct: 448 LVLLGLVVFLLLKTKKKKQETIIAPLPSGEVPSSLATQLSKIYEEEKELQPEFEKIPEYI 507 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 LL + E N A ++ KW + E Sbjct: 508 K-LLEIAEENPVLIANLISKWLKEE 531 >gi|313683040|ref|YP_004060778.1| flagellar m-ring protein flif [Sulfuricurvum kujiense DSM 16994] gi|313155900|gb|ADR34578.1| flagellar M-ring protein FliF [Sulfuricurvum kujiense DSM 16994] Length = 572 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 113/572 (19%), Positives = 215/572 (37%), Gaps = 29/572 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS------PHYDNLYVK 54 M Q L + + +I+ + + I + + + Y L+ + Sbjct: 1 MDFKTLFSQLVVFYGKLTQAQKIIIGTAVAGIIAFLVFLVVYTSEGKKGDNDGYQVLFEQ 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L D +++ L + I +RI + I VP +V K RI +A+ G+P G+ELF Sbjct: 61 LSGEDASKVIEQLEKDKIPYRIPRE-NVIEVPKEVVYKERIAIASLGIPKEGH-VGFELF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 DK FG T+F QE+ RALEGE+AR+I S+S + + V + +P F + P+AS Sbjct: 119 DK-QEFGATNFDQEVKFRRALEGELARSIDSLSPVEKSSVSLALPKETLFVEEAVPPSAS 177 Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGK 229 VM++ K I+ LVAAAVP L +V ++++ G+ L N+ + Sbjct: 178 VMVQLYPDRKLTPKQIRGIKKLVAAAVPKLTPENVALINAEGETLGDNDDASAMGELSSI 237 Query: 230 SLSIVQAIQHEIEMNINKALAA-FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + + E I LA G D + V E + Q +DP++ V Sbjct: 238 QQQYKTKEEKKQEEKIINVLAPFIGGKDRVVAKVTIEYDFSEQSSTSEKFDPENVVRSEQ 297 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + Q N+ V +K +NYE++ T Sbjct: 298 SSEEKREGAAPQQVGGVPGAVSNIGPVEGLAGGGGE---KFEKTTGTTNYEVSKTVSTTK 354 Query: 349 HDNYKLERLSIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRR 402 + +++R++ AVVV+ + ++ + I+ +V + G + +R Sbjct: 355 MEFARIKRMTAAVVVDGKYEPKKDASGQPTDEIEYIALDETQIQAIDALVKQSIGADEQR 414 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDI-LSRHFATVINALVFLVGTLLVTFLGLHALR 461 GD +T+ + +F ++ VS + +S + A +++ +++ + Sbjct: 415 GDQVTVRNFEFQMSKDGMRPKDAVSKTSLFISTYIAPFTPVFKYILVAIILFIAYKKIII 474 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 E + + NQ + N + Sbjct: 475 PFAERMLEFSREEEEFEKPNLEIADDEDEDLAEKVQLMRKKVENQLGLGENFNE----DE 530 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + E + E A +++ E Sbjct: 531 LKYDVLLEKVREIAEDHPEEIASLIQALIDEE 562 >gi|163800134|ref|ZP_02194035.1| flagellar M-ring protein [Vibrio sp. AND4] gi|159175577|gb|EDP60371.1| flagellar M-ring protein [Vibrio sp. AND4] Length = 583 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 106/566 (18%), Positives = 217/566 (38%), Gaps = 31/566 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + ++ Q + R L+L++V+ + + + +S + LY + E D+ Sbjct: 30 DVSKKIKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + VP V + R+ LA++G+ + +G + + +S G Sbjct: 85 EIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 + FM+ LEGE+ RTI S++ I ARVH+ +P F + ++ + ++ Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSIANARVHLAIPRQTLFVRQNTENPSASVMLELK 203 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 204 PGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADIASAEAGKVNAKYLEYQK 263 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +++ +I L +G NFR V A++N + + + D Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQIEETQEILD---NAPVVRNEHTIQN 320 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P V+ S + + E Y + + T + ++E Sbjct: 321 NSIDQIALGIPGSLSNQPPVTGEAPTND-SQNSNARSEVNRQYAVGSSVRRTQYQQGQVE 379 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N + ++ ++I+ ++ A GI+ RGD++++ S +F Sbjct: 380 KLSVSVLLNSKVAPDG------VAWSEAEKSQISTMIMDAAGISDARGDSLSLMSFNFTP 433 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + + + ++ V L + F L L D E+ Sbjct: 434 IEFDAPSAMPWWQDPTVQQ----PLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPVQELE 489 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530 P + T + + + ++ + S L + Sbjct: 490 FAEPQEEPQYDNIQTREELEREELLNRKLSERGIAVSSGLDVSNEMLPPAGSPLEIQLKH 549 Query: 531 LLHMIEINEERFAKILRKWARSEIED 556 L + ER A+IL++W Sbjct: 550 LQLIANEEPERVAEILKQWVNINEHS 575 >gi|319790420|ref|YP_004152053.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1] gi|317114922|gb|ADU97412.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1] Length = 532 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 117/564 (20%), Positives = 223/564 (39%), Gaps = 46/564 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-NSPHYDNLYVKLEVSD 59 M + + + R ++L L ++ ++ Y LY L D Sbjct: 1 MELRELSDKLTAFLREKANPRNIVLVLGALTLVVFLSLVLVRSYSNQEYAVLYTHLSPDD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L + I +++ +GS I VP V + R+ LAA+GLP G+E+FDK Sbjct: 61 AGEILTVLQQEKIPYKVEGDGSIILVPKDKVYEVRLQLAAKGLPH-GKVVGFEIFDK-PK 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G+T F Q + +RALEGE+ RTI+ + + +A+V+I +P F + P ASV++ Sbjct: 119 LGITQFQQNVEYLRALEGELERTIEQLDAVRSAKVNIALPKDSIFVRPEQEPKASVLVDL 178 Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSI 233 + +AI LV+ AVP L +VTV+D+ G++L+ N K L I Sbjct: 179 WPGRDLTPEQVKAIIFLVSHAVPGLKPENVTVVDTRGRVLSDLVESDNSTYAVSSKELKI 238 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + ++ +IE + L+ LG E+ + ++ +YDPD S R ++ Sbjct: 239 KRQLERDIERKVESMLSQVLGGGKVVVRASVEVETGKVETQKEIYDPDMTAVVSQRKVQE 298 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + QP+ A N+P V + + +KK+ +NY+++ + ++ Sbjct: 299 KEVATQKQPQGAPGTTTNVPPVVNFGPNAK--VVQKEKKDVTTNYDVSKTIERSVTPVFR 356 Query: 354 LERLSIAVVVN--KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R+++ V+V+ ++ G + + +IV + G + +RGD +T+ Sbjct: 357 IKRITVGVLVDGRYEKVKGPKGTVEYKFVPRSPQEIKTYEEIVKSVIGYDPKRGDRVTVA 416 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 S+ F L + + + A Sbjct: 417 SVPFETQLLAGNKPKEEKGFPW------------------------------QYAAGVGA 446 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + G ++ A L S ++ + + IN Sbjct: 447 LVAVLLGLLLMKLLKKPKAEAPPAGLQPGETLAQSLEEGLAARKEEIEEINLESDPIYLK 506 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 ++ + + + + ++ KW R E Sbjct: 507 -IVEVAKDYPDLISNVITKWMREE 529 >gi|145298346|ref|YP_001141187.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851118|gb|ABO89439.1| flagellar M-ring protein FliF [Aeromonas salmonicida subsp. salmonicida A449] Length = 569 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 89/563 (15%), Positives = 206/563 (36%), Gaps = 28/563 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q ++ R + L + + + + + + P L ++ + Sbjct: 23 EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYSTQELVKTL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS--SSSNSGYELFDKVNSFGL 122 L I + + +G S+ V + R+ L GL + +SN G + K +SFG+ Sbjct: 82 DYLDAQKIPYEV--DGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGV 139 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + M+ + E ++A I+ + A+V + +P F + +P+A+V++ Sbjct: 140 SQRMETERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGN 199 Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + Sbjct: 200 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEV 259 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + I+ L LG DN+ + V L+ Q+ Y+PD RS ++ S + Sbjct: 260 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEE--NSAS 317 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN-------TDKKEEQSNYEINTKSIATTHDNY 352 N P + + +KE N+E++T Sbjct: 318 GSNGGVPGALTNQPPAASNIPEEAAGGDGGAASSSGRSRKEATRNFELDTTVSHIRRQMG 377 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R++++V V+ + G + + + L + +++S G + RGDT+ + ++ Sbjct: 378 GIRRMTVSVAVDYKSIAGADGAVTREARSQAELDTLRRLLSGGLGFDVTRGDTLEVVAIP 437 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F +L N + F + ++ +++ + + + DA+ Sbjct: 438 FNRPELENVADAPIYEQP----WFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDARPE 493 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 ++ ++ + + + + + Sbjct: 494 GDLDLDNSIVLGGDDELSLLAAQAESEPVFGVRDGHLKLP-------DLHRDEDLLKAVR 546 Query: 533 HMIEINEERFAKILRKWARSEIE 555 ++ + A+++++W ++ Sbjct: 547 ALVANEPDLAAQVIKEWVSNKDA 569 >gi|149189866|ref|ZP_01868146.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148836352|gb|EDL53309.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 582 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 100/567 (17%), Positives = 212/567 (37%), Gaps = 32/567 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ Q + R L+L++V+ + + + +S Y LY + E D+ Sbjct: 29 DINAKVKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSYRPLYSQQERFDIG 83 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +R+ + + V V K R+ LAA+G+ + +G + + +S G Sbjct: 84 EIVSVLESEGIAYRLQEQNGQVLVAEGQVAKIRMLLAAKGV-KAQLPTGLDSLKEDSSLG 142 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMIR 178 + FM+ LEGE+ RTI S++ I ARVH+ +P F + + + ++ Sbjct: 143 TSQFMENARYRHGLEGELVRTIISLNAISNARVHLAIPRQTLFVRQQGEEPSASVMIELK 202 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 EAI +LV +V + V+V+D G+LL+A+ + K L + Sbjct: 203 PGEDLKPDQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVGSAEAGKVNAKYLEYQK 262 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ +I L +G N+R V A+++ + + + D + Sbjct: 263 NVEKQIIQRAADMLTPIVGPSNYRVQVAADMDFSRVEETQEILDTNP---VVRNEHSIQN 319 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + N P V+ S + E Y + + T + ++ Sbjct: 320 NTIDKIALGIPGSLSNQPPVTGEVPTND-SQNTNARSELNRQYAVGSSVRRTQYQQGQIS 378 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +LS++V++N+ + A+I+ +++ A GI++ RGD++++ S +F Sbjct: 379 KLSVSVLLNESAAPNG------TAWTPAERAQISTMITDAVGISADRGDSLSLMSFNFTP 432 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ + + + + ++ + + + F L L D + E+ Sbjct: 433 IEIEAPPAMPWWQDPTVQQ----PLRYVIGGMLGMAMIFFVLRPLIMHLTGADKRGNELE 488 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS------RINSYVSKQSDL 529 + T + + ++ + + + Sbjct: 489 FAEPQEEEYQENIQTREEREREEMLNRRLSEKGIESTSSGLDASSDMLPPPGSPLEIQLK 548 Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556 L + ER A++L++W Sbjct: 549 HLQLIANEEPERVAEVLKQWVNVNENS 575 >gi|323496555|ref|ZP_08101609.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326] gi|323318399|gb|EGA71356.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326] Length = 582 Score = 309 bits (791), Expect = 8e-82, Method: Composition-based stats. Identities = 98/557 (17%), Positives = 208/557 (37%), Gaps = 29/557 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 42 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 100 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +++++ +G++I VP+S R+ + GL N+G ++ + FG++ ++ Sbjct: 101 DQQKMEYKL--DGNTILVPTSEYNSLRLDMVRAGLNQEK-NAGDDILLQDMGFGVSQRLE 157 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 + E ++++ I+ + + ARV + +P F + +ASV + Sbjct: 158 LERLKLSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQ 217 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243 + +++ +V++AVP + +TV D G+LL++ + + + + + Sbjct: 218 EEVDSVVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRD 277 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V EL+ + +DP++ RS +D Sbjct: 278 KIDSVLIPILGFGNYTAQVDIELDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVV--A 335 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + KE N+E++T + R Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGSGTGQGSVHKEATRNFELDTTISHERRQTGVVNR 395 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++AV + + G + Q ++ LA I +++ A G + RGD + + SM F E Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSEADLASIRQVLIGAVGFSEARGDLLNVLSMQFAE 455 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ V + + +ALV + + + L R Sbjct: 456 PEVEVMADVPIWEHPNFNDWVRWFASALVII--------VVVLVLVRPAMKKLLNPASDE 507 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L P G L+ F S +L N + + + ++ Sbjct: 508 DDDQLYGPDGMPIGADGETSLIGSDLEGGELFEFGSSIDLP---NLHKDEDVLKAVRALV 564 Query: 536 EINEERFAKILRKWARS 552 E A++++ W + Sbjct: 565 ANEPELAAQVVKNWMQD 581 >gi|34498454|ref|NP_902669.1| flagellar MS-ring protein [Chromobacterium violaceum ATCC 12472] gi|34104309|gb|AAQ60668.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472] Length = 542 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 105/541 (19%), Positives = 201/541 (37%), Gaps = 17/541 (3%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 R L+ ++ + + + + + Y ++ E + AL I +R+ Sbjct: 10 NAWRYLLPIVLLAIGLSVVATLWLWRDDASYKPVFGAQEKVSGADMMAALDAEKIPYRVH 69 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 + VP + +AR+ LAA+G+ + +G EL DK + G++ F+Q++ R LEG Sbjct: 70 PQTGQVLVPDGDLARARMQLAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRGLEG 128 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHL 194 E+ ++IQ++ + +ARVH+ +P SF + V ++ + A+ L Sbjct: 129 ELVQSIQALDPVRSARVHLSLPRSTSFVTAGGEKGSASVVVTLKPGQQLSSEQIAAVVKL 188 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAF 252 VA +V +LD VT++D G LL+A+ + I G + + + E N L Sbjct: 189 VAGSVASLDPSQVTLVDQAGNLLSAHVDLSDGGIAGNNSEAARRFRDEALQNARDLLTPA 248 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 LG NF+ +V A+++ D + Y + + + + S N Sbjct: 249 LGAGNFKVSVTADVDNDRVEETREKY---GEAPKVTNEASREETSTERMALGVPGSLSNR 305 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 P +D P K Y + L RLS+AV +N+ Sbjct: 306 PVNTDSSSPAAD-KAGNSKNAVTRQYAYDRNITNIKRARGTLRRLSVAVALNQAAAPGGK 364 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 G + LA I+K++ GIN+ RGD + ++++ F + Q Sbjct: 365 G------WQPAELANIDKLLRNGLGINAERGDVLAVSTLRFAQPTPAEPFWEQPETWFEG 418 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 +R A + L+ + L ++D E+ Sbjct: 419 ARWAAYAVALLLAYLLLARPLLKLARQLAER-KLNDYTPDELDVTPDDPLLDNRPLREAA 477 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++ + + N L + ER A+++++W ++ Sbjct: 478 SQRQAALSAAPGDSPVVPLLENYDLPPAGSPVDVMVEHLKGLAAKEPERVAEVVKQWVQN 537 Query: 553 E 553 Sbjct: 538 N 538 >gi|255985845|ref|YP_354394.3| flagellar MS-ring protein [Rhodobacter sphaeroides 2.4.1] gi|77389308|gb|ABA80493.1| putative flagellar M-ring protein [Rhodobacter sphaeroides 2.4.1] Length = 509 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 114/530 (21%), Positives = 210/530 (39%), Gaps = 23/530 (4%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 + + + P LY L+ + AL + + G S+ V Sbjct: 1 MGATVAMFLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEVR--GDSVYV 58 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 ++ + R+ LA +GLP++ + +GYEL D ++ FG TS M + +RA EGE+ARTI + Sbjct: 59 EAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEGELARTILA 117 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMG 205 + AARVHI P FR+ + + + A A +HLVA+AV L Sbjct: 118 SPQVKAARVHIAQPAAQPFRREQRPTASVTVTTSGGAVTADQARAFKHLVASAVAGLQPE 177 Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 DV+V+DS L+ + + + ++ E+ N+ + L A +G V + Sbjct: 178 DVSVIDSVMGLIRSGDEKDGATAA----GESRAAELRSNVERLLEARVGPGRAVVEVSVD 233 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325 + + I E +DP +V S + + S P+ VTV N+P + +S Sbjct: 234 VETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--VTVASNLPEGDAKGGTGGKS 291 Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 +T + E N+E++ + RL++AV+V+ + G + + + L Sbjct: 292 --STSETREMVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADDGTVGWEPRPEEEL 349 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 A + ++V +A G++ RGD +T+ S+ F + + + ++I V Sbjct: 350 AVLRELVGSAVGLDESRGDRLTLRSLAFETPPEAGTLAETGFLSRLGAFDLMSLIQIGVL 409 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 + L++ + + A + P + Sbjct: 410 ALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPALTGEIDDSG----------- 458 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 D+ + ++ RL +IE + +ILR W + E Sbjct: 459 -DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEILRGWMEPQRE 507 >gi|254506888|ref|ZP_05119027.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16] gi|219550173|gb|EED27159.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16] Length = 582 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 99/557 (17%), Positives = 207/557 (37%), Gaps = 29/557 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 42 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 100 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +D+++ +G++I VPSS ++ + GL N+G ++ + FG++ ++ Sbjct: 101 DQQKLDYKL--DGNTILVPSSEYNTLKLDMVRAGLNQEK-NAGDDILLQDMGFGVSQRLE 157 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 + E ++++ I+ + + ARV + +P F + +ASV + Sbjct: 158 LERLKLSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLATGANLKQ 217 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243 + +++ +V++AVP + +TV D G+LL++ + + + + + Sbjct: 218 EEVDSVVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRD 277 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +L+ + +DP++ RS +D Sbjct: 278 KIDSVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVV--A 335 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + KE NYE++T + R Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGTGLGQGSVHKEATRNYELDTTISHERRQTGVVNR 395 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++AV + + G + Q D+ L+ I +++ A G + RGD + + SM F E Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSDADLSSIRQVLIGAVGYSEARGDLLNVLSMQFAE 455 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 ++ V + + +ALV + + + L R Sbjct: 456 PEVEVLQDVPIWEHPNFNDWVRWFASALVII--------VVVLVLVRPAMKKLLNPASDD 507 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L P G L+ F S +L N + + + ++ Sbjct: 508 DDDQLYGPDGLPIGADGETSLIGSDLEGGELFEFGSSIDLP---NLHKDEDVLKAVRALV 564 Query: 536 EINEERFAKILRKWARS 552 E A++++ W + Sbjct: 565 ANEPELAAQVVKNWMQD 581 >gi|148260475|ref|YP_001234602.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5] gi|146402156|gb|ABQ30683.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5] Length = 520 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 131/553 (23%), Positives = 239/553 (43%), Gaps = 38/553 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + +LG ++ + +V + + L A LY L + D + I+ Sbjct: 1 MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A+I + I + G S+ V + + +AR+ LA LP + S++G+ +FD N +SF+ Sbjct: 61 LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLP-AGSSNGFAIFDHKNPLLGSSFL 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184 I RAL+ E+ RTI I G+ A+RV +V+P F A ASVM+ P Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLNTAPAQASVMLSLAGVGPLD 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIE 242 ++S EAI +LVA+AVP L +++++D+ G LL + + ++ Q+ + ++ Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + LAA +G + R ++ D + Y+P+ +V RS + ++ S +S Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTRSK-SSRSSGT 298 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V+V N+P + K P+ L+ K + +NYEI+ H ++ R+S+AV+ Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 ++ + T G+ + + +A+I K+V A G + RGD + + S+ F N+L S Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + + S ++ LV + + + R Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLVTAAIGIAALLVVFRPMVRRII----------------T 461 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 PP ++ L+ N A+ + + +I+ + E Sbjct: 462 PPENTTAEPALLAEQNGAIAGPATTEET---------------NPVKVIADLIDRHPEAS 506 Query: 543 AKILRKWARSEIE 555 ILR W E Sbjct: 507 VAILRDWLGQEGA 519 >gi|258404702|ref|YP_003197444.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692] gi|257796929|gb|ACV67866.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692] Length = 504 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 120/503 (23%), Positives = 215/503 (42%), Gaps = 29/503 (5%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + R R L L V L+ + +F Y LY + + + + L Sbjct: 17 SLIQRIQDWPRRRKLSLLVVGLLCVAVFTFLILQARVADYQLLYADMTQQEASSVVDWLQ 76 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ++N+ +++ D GSSI VP+ V K R+ LA GLP G+E+FD+ FG+T F Q+ Sbjct: 77 DSNVSYQLRDQGSSIYVPAGQVYKTRLDLAGDGLPQ-GQGVGFEIFDQ-QRFGVTQFTQQ 134 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186 + RAL+GE+AR++ +++ + +ARVH+V+P+ R+ + ASV++ Sbjct: 135 VNYQRALQGELARSVATLTSVQSARVHLVLPERQFLREQQEKAKASVVVEFAPGQGLDSN 194 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243 + I LV+ +V + +VTV+DS G +L+ + I + L QA++ + E Sbjct: 195 QIKGIIRLVSGSVEGMAANNVTVVDSQGNVLSGGEEEDSGSPISPEKLEYKQAVEGQYEQ 254 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 L G + V A ++ ++ E +YDPDS V RS + S+ Sbjct: 255 RAQALLDRVFGPNKALVRVTAAIDFVSKHTTEELYDPDSIVPRSEKTSE----------- 303 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N + + + + + E NYEI+ T ++ LS+AV+V Sbjct: 304 ------SNSGTTAREETEGNAGGQRSSESTETVNYEISRTVNEITKTMGGVKNLSVAVLV 357 Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 + L A +G L +VS+A G+ RGD+I + +M E +SGT Sbjct: 358 GQQFLQNKGNGGAAEGHSVESLQR---LVSSALGLQPDRGDSIEVVAMPVQEQAGLSSGT 414 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + + + + +G +L FL + + + + + + + Sbjct: 415 SANAGFSL--YDYLPFVKYGLIALGFILAYFLLVRPVLQTFRSEVTEHYKTVDELEGEYR 472 Query: 484 PISSAVTTGLMPNDNIALDSSNQ 506 + T L N + + Q Sbjct: 473 EKVTDPTEQLRQEINHSEVTPAQ 495 >gi|94968680|ref|YP_590728.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis Ellin345] gi|94550730|gb|ABF40654.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis Ellin345] Length = 529 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 117/551 (21%), Positives = 222/551 (40%), Gaps = 32/551 (5%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 Q Q SL T+ L LA L L + P LY L+ D + Sbjct: 10 QGKQIANFLRSLTGTQKLWLAFAGLTVTTLLYVFVTMLAKPEMKPLYSGLQAQDAQALGS 69 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L+ I+++IS +G+S+SV + AR+ +A+ G P S G+ELFDK ++G + F Sbjct: 70 KLAAQKIEYQISPDGTSVSVAVDKLDSARLLVASDGGPKSG-RMGFELFDK-PNWGSSDF 127 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 +++ RALEGE+ RT+ +I G+ A RVH+V+P F ASV+++ Sbjct: 128 SEKVNYQRALEGELERTLSTIDGVEAVRVHLVLPRESLFADKREEAKASVILKLRGAMSP 187 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 S AIR +A AV L VTV+D+ L + + + Sbjct: 188 NSDVAIRRFLAGAVEGLRPEGVTVIDAENNL-----PIGKTSSDGSGVESERDQALAKEL 242 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L +GV R++V E ++ + + YDP+S +++ S++ + Sbjct: 243 VRTLEPIVGVGGARASVHVEYDVTSGDETQETYDPNSTAALTMQKSEETVGGT--LAQGV 300 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 N+P+ + + K E + Y +N T +++R++ A++V+ Sbjct: 301 PGTASNIPNTQSPSKSTNSADSQSSKSESGT-YAVNRVVRHTLLPAGRIKRITAALLVDD 359 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QLFNSGTV 424 +T+ +G ++ + L +I+ + A+ GIN RGD + + ++ F EN Sbjct: 360 ADVTDAMGNTSRAKRSPEELKKIDSLARASLGINDARGDVLAVENLSFHENKPEVLVPLT 419 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 ++ + + + F+ + + + L+V + L +RR + + + Sbjct: 420 KLDKVARVGKQFSWTLRYALIALLFLIVYVVVLRPVRRQVVLSLKQLPSRPANDAVLNGN 479 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + G+ D + +L+ + + Sbjct: 480 TGKVLPQGVESADPAV---------------------RQAATLKKQLIEKAKAEPASAGQ 518 Query: 545 ILRKWARSEIE 555 +++ W R E Sbjct: 519 LVQSWLREEEA 529 >gi|301168113|emb|CBW27699.1| flagellar basal-body M-ring protein [Bacteriovorax marinus SJ] Length = 554 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 121/566 (21%), Positives = 237/566 (41%), Gaps = 25/566 (4%) Query: 2 AILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 L+++ F + SL + + L S+ + F+ + + D LY +L D Sbjct: 3 DFLEKIIRNFTEFFNSLDLNKKIGLVSIAAFIVACFVGIVIWASKTRMDVLYTELNREDS 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I+V L E I + +S++G +IS+P ++ K R+ +A G+ S GYE+FDK SF Sbjct: 63 KKIAVLLEEKKIPYEMSNDGKTISIPEELINKWRLEIATLGVNFSG-TVGYEVFDK-QSF 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179 G TSF+Q++ + RALEGE+ +TI+ I G+ ARVH+ +P+ F P+ASV++ Sbjct: 121 GTTSFVQKVNKQRALEGELVKTIKYIRGVKRARVHLSIPESSPFVSEKKAPSASVVVDLE 180 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQA 236 + + LV++++ + +V +LD GK L+ N + +++ Sbjct: 181 RGVTLTPDEIKGVASLVSSSIDGMRNENVVILDDRGKKLSENIGDPMTAYTANRMALEGK 240 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + + E I L+ +G + V L+ + +D ++K S + Sbjct: 241 VNRKYEKQIEDILSKVVGAGKVIAKVTVNLDFTESVSTKTEFDGENKAVLSEVSNTQKLN 300 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 P+ N+P + P + N DK NY + +K + + + + Sbjct: 301 GSRPSPQGIPGARSNLPGEQPQPGI-PETRNNVDKSLATRNYNVPSKVTKSKNPTAGIRK 359 Query: 357 LSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +S AV+++ R+ + + + ++ LA + IVS+ GI++RRGD I I +M+ Sbjct: 360 ISAAVMIDGRRVQVKGADGAISTQYERWSEADLANFSAIVSSTLGIDARRGDQIVIKNME 419 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F Q + + ++ L + L FL + + + + Sbjct: 420 F--AQEDMASIEAMMREKENRELIKNIVKYLTVGLAITLFFFLVVRPFIQWVTDNTVETV 477 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E L A D + + N+ +++ Sbjct: 478 EDFLPKTLEELEKVQANQKLPGLEDALPQIEEKLNPEKIEGNML-----------REKII 526 Query: 533 HMIEINEERFAKILRKWARSEIEDRY 558 ++E N + A+++ + ++ D+ Sbjct: 527 SLVEGNPAKAAQVIHEIIHAQESDKQ 552 >gi|126734120|ref|ZP_01749867.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2] gi|126716986|gb|EBA13850.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2] Length = 526 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 129/546 (23%), Positives = 215/546 (39%), Gaps = 27/546 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + K ++L R +IL V V M + + L+ LE + A Sbjct: 1 MENLGKVWSALSIQRRIILIVVTGVVFMAVLLLARGAGTKDMSLLFGGLEPRAAGDVVTA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + + G++I VP+ R+ LA QGLP++ S GYEL D ++ F T+ M Sbjct: 61 LDQQGVAYEVR--GNAIYVPTVQRDGLRMALAGQGLPATGSQ-GYELLDSLSGFSTTAQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + I AARVHI P F+ ++ A + A + Sbjct: 118 FDAAYWRAKEGELARTIVASPHIRAARVHISTPSQRPFQAAQSQTAAVTVTMAGTTLSTQ 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 +A++ L+ AAVP L DV V+D G LL+ + + + Sbjct: 178 HLKALQFLIGAAVPGLSPADVAVIDDEGGLLSEADTNSAGMNG-----DNHAENLRKRAE 232 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + LAA +GV N V + ++T+ I E DPDS++ S +++ + S S+ V Sbjct: 233 RLLAARVGVGNAVVEVSVDQVLETEMITERRVDPDSRIAISTDVTESSGNSTDSR-GGDV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P S + +NYE++ T + RL++AV+VN Sbjct: 292 TVASNLPDGDAGARSGSASN-ENSESRTLTNYEVSQTERQLTKAPGAIRRLTVAVLVNDL 350 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 T G + + + LA + +V++A G++ RGD +T+ SM F + + Sbjct: 351 VDTAADGTTTTTPRTEGELAALEDLVASAVGLDVDRGDVLTLRSMPFEPFEPVGTAATGP 410 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + L +I V L++ + + A+ + P Sbjct: 411 A--ASLPLDMMQLIQIGVLAAVALILGLFVVRPILASSGASAAQLSIEEQAEPIDISPPM 468 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + D I D RL +I E ++L Sbjct: 469 AMAMDDNALGDFIDNGLLGMDA---------------DDDPVARLKRIIADREPETLQVL 513 Query: 547 RKWARS 552 + W Sbjct: 514 QNWIEE 519 >gi|117928049|ref|YP_872600.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B] gi|117648512|gb|ABK52614.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B] Length = 533 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 122/560 (21%), Positives = 221/560 (39%), Gaps = 39/560 (6%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + L + + ++ A ++L ++ + R + P Y L+ L SD Sbjct: 1 MNVRAILDRIRAVFGEFTAGQKMVTALIVLALVIGAVLFRSWAAKPSYAPLFSNLAASDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I+ L+ +R++D GS+I VP V + R+ +A LP+SS SG+ L DK Sbjct: 61 AAITDKLNSLKEPYRLADGGSTILVPQKDVYQLRLDMAKANLPASS-QSGFSLLDK-GGI 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 + F Q + +ALE E+A+TI++I+G+ +A V+IV+P F + ++PTASV++ Sbjct: 119 TTSEFQQNVAYQQALESELAKTIEAINGVQSAIVNIVLPQTDVFTQDSSKPTASVLVTTQ 178 Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQ 235 + +AI HLVA++V L+ DVTV DS G +L+A M+ + Sbjct: 179 PSSTLTPEQVQAIVHLVASSVEGLNPADVTVADSQGHVLSAPGMDGQLSAASTLQDQQTA 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY---DPDSKVERSIRLSK 292 A + + + L +G + V A LN DT+ Y P + + Sbjct: 239 AYEQRVAQAVQNLLQPLVGPGHVVVQVNAALNFDTKSTTSETYLQPSPGTTPIPLSQSWS 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 S T+Q + + N+ + P + + I Sbjct: 299 YETYSGTNQAATGILGPDNIAVPTPSPSPG-----TYQSQSATVDNAIGRVVEEVKTAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 +ERLS+AV+++ V L ++ +V++A G+ + RGD++++ +M Sbjct: 354 SVERLSVAVLLDSAAAKNVN------------LTDVKNLVTSAAGVQTSRGDSVSVATMP 401 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F +Q + S + ++ V L+V + LRR + Sbjct: 402 FDTSQQAAEKKALAAAQKAQSMN--KLVGYAKDAVIALIVLGIIFFFLRRAKKAAEVSPI 459 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + A G + + S + + Sbjct: 460 LSLAERVELEEARRRAALGGGDGAERKEIPSGQKPADRLEITTPLAAE----------IG 509 Query: 533 HMIEINEERFAKILRKWARS 552 ++E E A++LR W Sbjct: 510 ELVERQPEEVAQLLRGWLAD 529 >gi|51246508|ref|YP_066392.1| flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54] gi|50877545|emb|CAG37385.1| related to flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54] Length = 545 Score = 308 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 125/551 (22%), Positives = 234/551 (42%), Gaps = 41/551 (7%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 FF +R L L +V+++ + F + LY L +D ++ L Sbjct: 29 KNFFTLLRDWPLSRQLSLGAVLILCLAAFATIIIQTRTVDQQLLYANLSATDAAAVTEWL 88 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I + + D+G S+ + S+ + +AR+ LAA GLP S G+E+FDK N F LT+++Q Sbjct: 89 KGQKIPYSLKDSGKSVWIGSNKIYQARLDLAANGLP-SGGGVGFEVFDKQN-FALTNYVQ 146 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185 +I RAL+GE+ARTI S++ I + RVH+ +P+ F+ + TASV++ Sbjct: 147 KINYSRALQGELARTISSLAPIESTRVHLAIPEKRLFKNQQKQATASVILSLVPGKTLSQ 206 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEIE 242 + E I +LVA +VP L+ +V VLDS+G +L E + L+ + I+ ++E Sbjct: 207 EQVEGIAYLVAGSVPGLETDNVKVLDSSGVILGDREQNGGDRALSSDMLAFQKEIETQME 266 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 M L +G D+ V A ++ + E +D D V RS + + + S ++ Sbjct: 267 MRAQDLLTRTMGADHALVRVTATVDFAKVEKTEEFFDADDPVIRSEQ--INNESSRGAEA 324 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 VE N+ + P ++ K +NYEI+ + +++LS++V+ Sbjct: 325 GGIPGVESNLQGTQKKSGTGPSAV----KNGRTTNYEISKTISHIVNPVGTVKKLSVSVL 380 Query: 363 V-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V ++ +L + + L + +V++A G+ + RGD I + SM F ++ Sbjct: 381 VADRQKLDPDTQEPSYTPFSTTELKALENMVASAIGLVATRGDVINVISMPFFQDPQEFE 440 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + L R+ ++ L+ L+ + FL + + + + + + + Sbjct: 441 TDQDDTM--ELVRNSMPLVKYLLALLAIFFLYFLLVRPILKTVKGEVLQHNKTVDEMEKE 498 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + P + + +N + Sbjct: 499 QQRRNQEKKEESTPLPPLDIALANIRQEVMQEHTP------------------------- 533 Query: 542 FAKILRKWARS 552 A I++ W Sbjct: 534 TAFIVKNWIHE 544 >gi|83944186|ref|ZP_00956642.1| flagellar M-ring protein [Sulfitobacter sp. EE-36] gi|83845053|gb|EAP82934.1| flagellar M-ring protein [Sulfitobacter sp. EE-36] Length = 548 Score = 308 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 140/550 (25%), Positives = 247/550 (44%), Gaps = 24/550 (4%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 ++L + ++L + V P Y LY L ++ N I L+ A + +S++G+S Sbjct: 1 MMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAMVSEDGTS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP +AR+ LA G+P G+ELFD+ + + SF+Q+I ++RA+EGE+AR+ Sbjct: 61 ISVPRGDAVRARMVLAETGMPIDGDP-GWELFDESSGLAMNSFLQKINKMRAMEGELARS 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVP 200 IQ++ GI +ARVH+V+PD F + P AS+++R K A A+ +LVA+AV Sbjct: 120 IQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSNLVASAVA 179 Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260 +LD+ VTVL ++G+ + A + + G S I+ + I L A +G N R Sbjct: 180 DLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARVGAGNARV 239 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V EL + I E YDPD +V RS + Q V VE N+P Sbjct: 240 HVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTGTKE--AGNVGVENNIPAALAD-G 296 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 + + +E YEI + + R+S+AV+VN + + Sbjct: 297 NGAGTSTRRSEADEIVQYEIGNTRREIVREAGDVRRMSVAVLVNGIYNVDGS-DVIYAER 355 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 LA + ++V A G ++ RGD++++ SM F++ + + S D LS + +++ Sbjct: 356 TPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDELSENVVSIV 415 Query: 441 NALVFLVGTLLVTFLGLHALRRL--------------HNIDDAKKGEVGGKSILSPPPIS 486 ++ L+ L+ G+ + R + A + P Sbjct: 416 RGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAAEPAALTAEGQRPKLPG 475 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQSDLRLLHMIEINEERFA 543 + + D+ L ++ DI + + I + K+ + + + + Sbjct: 476 TTPAVADIAEDDDPLTITDDDIEAAEVAEYVRKEGIRGNLHKKKIETIQQLADEKPQEVL 535 Query: 544 KILRKWARSE 553 +++R W +E Sbjct: 536 RVIRSWLPAE 545 >gi|330828799|ref|YP_004391751.1| flagellar M-ring protein FliF [Aeromonas veronii B565] gi|328803935|gb|AEB49134.1| Flagellar M-ring protein FliF [Aeromonas veronii B565] Length = 569 Score = 308 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 90/563 (15%), Positives = 209/563 (37%), Gaps = 28/563 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q ++ R + L + + + + + + P L ++ + Sbjct: 23 EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYTTQELVKTL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP--SSSSNSGYELFDKVNSFGL 122 L + I + + +G S+ V + ++ L GL + S+ G ++ K +SFG+ Sbjct: 82 DFLDQQKIPYEV--DGKSVLVNAESYPTIQLALTRAGLANATDSNIGGEDILLKDSSFGV 139 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181 + M+ + E ++A I+ + A+V + +P F + +P+A+V++ Sbjct: 140 SQRMESERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGA 199 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239 ++I +VA+AV L+ VTV D G+LL + + K ++ Q + Sbjct: 200 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPISAQTRKEFAMQQKQEL 259 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E + I+ L LG DN+ + V L+ Q+ Y+PD RS ++ S + Sbjct: 260 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEE--NSAS 317 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN-------TDKKEEQSNYEINTKSIATTHDNY 352 N P + + +KE N+E++T T Sbjct: 318 GSNGGVPGALSNQPPAASNIPEEATGGDGASAAASGRSRKEATRNFELDTTVSHTRRQMG 377 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R++++V V+ + G + + + L + +++S G + RGDT+ + ++ Sbjct: 378 GIRRMTVSVAVDYKAVPGADGAVTREARTQAELDTLRRLLSGGLGFDVTRGDTLEVVAIP 437 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F +L V + F + ++ +++ + + + DAK Sbjct: 438 FNRPELDTVAEVPL----YDQPWFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKPE 493 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + ++ +N + + + + + Sbjct: 494 GEVDFDNHTVLGGDDELSLLSAQVENDQVFGVRDGQLKLP-------DLHRDEDLLKAVR 546 Query: 533 HMIEINEERFAKILRKWARSEIE 555 ++ + A+++++W ++ Sbjct: 547 ALVANEPDLAAQVIKEWVTNKDA 569 >gi|326403668|ref|YP_004283750.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301] gi|325050530|dbj|BAJ80868.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301] Length = 520 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 130/553 (23%), Positives = 239/553 (43%), Gaps = 38/553 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + +LG ++ + +V + + L A LY L + D + I+ Sbjct: 1 MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A+I + I + G S+ V + + +AR+ LA LP + S++G+ +FD N +SF+ Sbjct: 61 LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLP-AGSSNGFAIFDHKNPLLGSSFL 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184 I RAL+ E+ RTI I G+ A+RV +V+P F A ASVM+ P Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLSTAPAQASVMLSLAGVGPLD 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIE 242 ++S EAI +LVA+AVP L +++++D+ G LL + + ++ Q+ + ++ Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + LAA +G + R ++ D + Y+P+ +V RS + ++ S +S Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTRSK-SSRSSGT 298 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 V+V N+P + K P+ L+ K + +NYEI+ H ++ R+S+AV+ Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 ++ + T G+ + + +A+I K+V A G + RGD + + S+ F N+L S Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + + S ++ L+ + + + R Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLLTAAIGIAALLVVFRPMVRRII----------------T 461 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 PP ++ L+ N A+ + + +I+ + E Sbjct: 462 PPENTTAEPALLAEQNGAIAGPATTEET---------------NPVKVIADLIDRHPEAS 506 Query: 543 AKILRKWARSEIE 555 ILR W E Sbjct: 507 VAILRDWLGQEGA 519 >gi|90579927|ref|ZP_01235735.1| flagellar M-ring protein [Vibrio angustum S14] gi|90438812|gb|EAS63995.1| flagellar M-ring protein [Vibrio angustum S14] Length = 582 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 97/550 (17%), Positives = 213/550 (38%), Gaps = 23/550 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L E ++ I + I+ Sbjct: 45 LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPL-GTYETEELIPILDHFDQKKIE 103 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+ ++ L GL ++ + G ++ + FG++ M+ Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTAEGDDILLQDMGFGVSQRMESERLKL 160 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191 + E ++AR I+ IS + A+V + P F + TA+V + + ++I Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249 +VA AVP L VTV D G+LL++ + + K + + + I+ L Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA---- 305 LG+ N+ S V ++ + YDP + RS +D Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSN 340 Query: 306 -VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VE +P + + +E NYE++T ++R +++V V+ Sbjct: 341 QPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAVD 400 Query: 365 KGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 +T+ G ++ +A+I +++ G + RGD + + S+ F+ + + Sbjct: 401 YKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFVLPESQLAAD 460 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + S + ALV +V +++ + L + D + G +++ Sbjct: 461 LPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMANS 520 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 S + + F S + N + + + +++ + A Sbjct: 521 ADSVGLIGAELDGGE---------GFELSSSSLDLPNLHKDEDLLKAVRALVDNEPDLAA 571 Query: 544 KILRKWARSE 553 ++++ W + Sbjct: 572 QVVKSWVNED 581 >gi|88597235|ref|ZP_01100470.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 84-25] gi|88190296|gb|EAQ94270.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 84-25] Length = 560 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFHGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + + +S + Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|148980292|ref|ZP_01815979.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] gi|145961311|gb|EDK26621.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] Length = 557 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 113/520 (21%), Positives = 208/520 (40%), Gaps = 24/520 (4%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97 + +S + LY K D +++ L E +I +++S + I VP V K R+ L Sbjct: 55 VIMLWTSSERFRPLYSKSANFDSSQVLHMLDEESIRYQLSQDDGQILVPEGDVAKIRMIL 114 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A++GL SG++ D S G + FM+ ALEGE+AR+I ++S + ARVH+ Sbjct: 115 ASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLA 173 Query: 158 MPDMGSFRKIGARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 +P F + A + +I E+I +LV+ AV L V V+D G Sbjct: 174 IPKESLFMRDDAEQPRASVIVHIINGMDLKPTQVESIINLVSGAVIGLKSEHVRVVDQHG 233 Query: 215 KLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 +LL+ + GK + ++ + L LG NFR + ++++ Sbjct: 234 RLLSNDATVGDITVTTGKQSDYKRNLEKTLVAQATDMLTPILGAANFRVQIASDIDFSKV 293 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 + E +Y + + + +E+S N P V+D + P ++ Sbjct: 294 EETEEIY----ADPVVRKETLLSDMNESSMALGIPGALSNTPPVTDGEPQ-PEPNAKVNR 348 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391 E +Y ++ K T H L+ LS+++VVN + +Q L + + Sbjct: 349 SETSRDYAVSGKVRHTQHQQGVLQNLSVSIVVN-------DLANPNQTWTPEELTNVENV 401 Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 V +A G N+ RGD+I T F+ + V + H + L+ ++ + L Sbjct: 402 VRSAIGFNTERGDSIHTTHFPFVIASIPEQAPVAW----FENTHIMQPLKYLLGVMLSGL 457 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 + + L L + A++ E+ +S+ I+ + Sbjct: 458 MIMVVLRPLAQYLTK-SAEQEELEAESMEYDDVITKEERAADAALQSKLESLGIDATGIK 516 Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + + + L + + + R A+ILR W + Sbjct: 517 ALDDNLPSADSPLEVQIKHLKLIAKEDPNRVAEILRTWIQ 556 >gi|332533127|ref|ZP_08408996.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis ANT/505] gi|332037409|gb|EGI73863.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis ANT/505] Length = 571 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 86/559 (15%), Positives = 215/559 (38%), Gaps = 23/559 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q + + + R + L + + + + + + P L K++ ++ + Sbjct: 27 EQKSGYLSALNGVDVLRQVTLVIALAICLAIAIFIIIWARQPDMRPL-GKMQTEELIQTL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I++++ +G+ +SV S ++ + +GL SG ++ + FG++ Sbjct: 86 DFLDAQKIEYQL--DGNVVSVDESEYQNIKLLMTREGL-EQGPASGSDIIMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ E ++ARTI+ ++ I A+V + +P F + +P+A+V++ Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240 + +++ ++A+AV L+ VTV D G+LL + + + E Sbjct: 203 LDREEVDSVVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLAARSRKEYDLERKREQE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + + Y+PD RS ++ + Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSSVEETQKRYNPDLPAVRSETTFEENNIGGLA 322 Query: 301 QPESA-----VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + N+P + + + KE NYE++T + + Sbjct: 323 VGIPGALTNQPPLNSNIPEDAGQGGAGTATSPTRSHKEATRNYELDTTISHKRQQSGVIR 382 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 R+S++V V+ G + + L+ I +++ G + +RGD + + ++ F+ Sbjct: 383 RISVSVAVDYVPKVGENGETTMAPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + V + D F + ++ + +++ + + + D E Sbjct: 443 EATNLAIEVPLWEQD----WFMKIARLVLGALVIIVLIMAVVKPMLKRLIYPDDTLEEYD 498 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 ++ S I L + + A + D +L + + + ++ Sbjct: 499 EDALSSGVDIGDNTLDMLNKDFDSASVGFSSDGTLQLPDL------HGDEDLLKAIRALV 552 Query: 536 EINEERFAKILRKWARSEI 554 E +++++ W + Sbjct: 553 ANEPELSSQVVKAWLTEDD 571 >gi|149191163|ref|ZP_01869421.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148835001|gb|EDL51980.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 557 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 112/554 (20%), Positives = 215/554 (38%), Gaps = 25/554 (4%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 L++ + + R +I+ ++ + + ++ + LY K D +++ Sbjct: 22 LNKASGWLNTFWQ-SSQRNVIIITIFATITAAIIVIMLWTSAERFRPLYSKSANFDSSQV 80 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E +I +++S + I VP V K R+ LA++GL SG++ D S G + Sbjct: 81 LQLLDEESIRYQLSQDDGQILVPEGDVAKIRMILASKGL-KEQLPSGFDSLDSSKSLGES 139 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIRAI 180 FM+ ALEGE+AR+I ++S + ARVH+ +P F + R + V I Sbjct: 140 QFMENARYRHALEGELARSITTMSAVSLARVHLAIPKESLFMREDGEQPRASVIVHIING 199 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237 E++ +LV+ AV L V V+D G+LL+ + GK + + Sbjct: 200 MDLKPTQVESVINLVSGAVIGLKSEHVRVVDQHGRLLSNDATVGDITVTTGKQSDYKRNL 259 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + L LG NFR + ++++ + E +Y + + + Sbjct: 260 ERTLVAQATDMLTPILGASNFRVQIASDIDFSRIEETEEIY----ADPVVRKETLLNDVN 315 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 E+S N P V+D + P ++ E +Y ++ K H L+ L Sbjct: 316 ESSMALGIPGALSNTPPVTDGEPQ-PEPNAKVNRSETSRDYAVSGKVRHIQHQQGVLQNL 374 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+++VVN +A+Q L + +V +A G + RGDTI IT F+ Sbjct: 375 SVSIVVN-------DLANANQTWTPEELTNVENVVRSAIGFSETRGDTIHITHFPFVVAS 427 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + V + + + L+ ++ + L+ + L L + ++ + Sbjct: 428 IPDQAPVAW----FENTNIMQPLKYLLGVMLSGLMIMVVLRPLAQYLTKSAEQEEQEAES 483 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + + +S + L + + Sbjct: 484 MEYDDVITKEERAAEAALQSKLESLGIDATGIKALDDNLPSADSP-LEVQIKHLKLIAKE 542 Query: 538 NEERFAKILRKWAR 551 + R A+ILR W + Sbjct: 543 DPNRVAEILRTWIQ 556 >gi|83859389|ref|ZP_00952910.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633] gi|83852836|gb|EAP90689.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633] Length = 551 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 133/552 (24%), Positives = 234/552 (42%), Gaps = 10/552 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + + G R+ + + + +NS L+ L +D +S Sbjct: 1 MNAILEQLSRFGVGRLAAILGLTAGAAAALVFFTMSMNSNGQALLFSGLGPADAAAVSQR 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A I + + + GS++ V + V +AR+ +A+ G S + GYE+FD+ ++ G TSF+ Sbjct: 61 LDQAGISYELQEGGSAVYVSTDQVDEARMRVASGG-ALSFGSVGYEIFDETDALGTTSFV 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 Q + RALEGE+AR+I +++ + AARVH+V+P+ F + P+ASV+I Sbjct: 120 QNVNAKRALEGELARSINTLNTVSAARVHLVLPERRLFSREQQEPSASVVISVRGELPSA 179 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMN 244 IR+LVA AVP L +T+ D G+LL A + AI+ +++ Sbjct: 180 QINTIRNLVATAVPGLQANRITLADDQGRLLAAPSDAEGDVLGAMLDDRQNAIERDLQQK 239 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I + +G R AV AE+N ++Q + YDPD +VE S R ++ + Sbjct: 240 IRDLVEGIVGSGGVRVAVTAEINRESQTRTRLEYDPDGQVEVSRRAIEERRSE--PVNSG 297 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 V+V +N P L ++ + NY+ + + LERL+++VVV+ Sbjct: 298 GVSVSENTPDAEAGANGETPLLATSESSTTERNYQNTQEETVSIIQAGDLERLAVSVVVD 357 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR----GDTITITSMDFLENQLFN 420 + + G + + + ++ L +I +V+AA G + GD I + Sbjct: 358 EVAVVGEDGTLSFEPRSEAELTQIRNLVAAAVGFPTDTTLTDGDQILQVTSMRFNRPDLT 417 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 GT + F + V V LLV L L + + + + Sbjct: 418 LGTPAPEGFSLARLDFMRIAEIAVLFVTALLVILLVARPLVQGAVGNVSAARPALAGAGS 477 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 L+ N + + D S ++I V K S ++ ++E + + Sbjct: 478 GGGKALPDNVQALLGNSDGTVMLPEGD-PSDDHIDVAQIEGQVKKSSVRKVAALVEQHPD 536 Query: 541 RFAKILRKWARS 552 ILR W Sbjct: 537 ESMSILRTWMHD 548 >gi|74101647|gb|AAZ99737.1| FliFL [Aeromonas hydrophila] Length = 580 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 112/544 (20%), Positives = 219/544 (40%), Gaps = 35/544 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILIL-ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 + ++ + ++ SL R IL +++ + + + +S +Y LY K E+ D Sbjct: 14 SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 73 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L + + FR+ + I VP S + R+ LAA+G+ ++ +G E D V Sbjct: 74 ANIMEMLEKEQVPFRLEKSTGQILVPESQLAHVRMALAARGV-RAAMPAGLEGLDNVTGL 132 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVM--I 177 G + FM+ ALEGE+ARTI S+ + +ARVH+ +P F + +P+ASVM + Sbjct: 133 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMLDL 192 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + EAI +LVA ++ + G VT++D G+LL+A + + + Sbjct: 193 QPGQAMELGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 252 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 V+ ++ I + L LG NFR + A++N + + + DP + S Sbjct: 253 VRKLEQYIRQRASDMLYPMLGTGNFRVQIAADVNFNAVEETQQQLDPQG---VVTKESTK 309 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEIN 341 + ++ + N P + K P + + T E Q N YE + Sbjct: 310 SDKTIDALALGIPGALSNRPPETTPKSEQPAANQGTTSSETQKNDSRTERQEINKQYENS 369 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + T + +LE++++++++N+ + G L +I ++V + G + Sbjct: 370 RTIVHTRYQQGRLEKMNVSILLNQQSAPKD-------GWSAEQLEQIRQMVERSVGFDDA 422 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD I++ DF ++ L+ L F G+ L Sbjct: 423 RGDQISLQVFDFTGAVPIAPPESGWWETPYWQDSLRYLVGGLLGLTLV----FFGIRPLV 478 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + E + + ++ + + + + ++ + +S Sbjct: 479 KHLVRTQQLPDEEPAEEQDEQQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSS 538 Query: 522 YVSK 525 + Sbjct: 539 LNLE 542 >gi|86149222|ref|ZP_01067454.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni CF93-6] gi|148926414|ref|ZP_01810097.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205356032|ref|ZP_03222800.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218561977|ref|YP_002343756.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840580|gb|EAQ57837.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni CF93-6] gi|112359683|emb|CAL34469.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844577|gb|EDK21683.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205346156|gb|EDZ32791.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925590|gb|ADC27942.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315928381|gb|EFV07695.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930535|gb|EFV09578.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 305] Length = 560 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + + +S + Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|312884912|ref|ZP_07744602.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367389|gb|EFP94951.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 583 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 101/550 (18%), Positives = 200/550 (36%), Gaps = 29/550 (5%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 L R ++L I + + L + F+V P L + ++ I L + +D+ Sbjct: 50 GDLDLLRQVVLVLSISICVALIVMLFFWVREPEMRPL-GVYDTEELIPILDYLDQQKLDY 108 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 + G++I VP S ++ + GL + +G ++ + FG++ +++ + Sbjct: 109 EL--EGNTILVPVSDFNSLKLDMVRAGL-NQEREAGDDILMQDMGFGVSQRLEQERLKLS 165 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR 192 E ++++ I+ + + ARV + +P F + +ASV + + +++ Sbjct: 166 RERQLSKAIEELKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQEEVDSVV 225 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKALA 250 +VA+AVP + VTV D G+LL++ + + + + + I+ L Sbjct: 226 DMVASAVPGMKPNRVTVTDQHGRLLSSGSEDPASSARRKEHELERKQEQALREKIDSVLI 285 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 LG N+ + V EL+ + V+DPD RS +D + Sbjct: 286 PILGFGNYTAQVDIELDFSAVEQTRKVFDPDKPATRSEYTLEDYNNG--NMVAGIPGALS 343 Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P + + KE N+EI+T + R ++AV V Sbjct: 344 NQPPADASIPQDVAQMKDGTALGQGSVHKEATRNFEIDTTISHERRQTGVVNRQTVAVAV 403 Query: 364 NKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + G + Q ++ L I +I+ G + RGD + + SM F E + Sbjct: 404 KNRSVVNPDTGETTYQPISEAELNSIKQILIGTVGFSESRGDLLNVLSMQFAEPESDVVT 463 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 V + + +ALV + + + L R + Sbjct: 464 DVPIWEHPNFNDWVRWFASALVII--------VVILVLVRPAMKKLINPASDEDDDQMYG 515 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 P G LD F S +L N + + + ++ E Sbjct: 516 PDGMPIGADGETSLIGGELDGGELFEFGSSIDLP---NLHKDEDVLKAIRALVSNEPELA 572 Query: 543 AKILRKWARS 552 A++++ W + Sbjct: 573 AQVVKNWMQD 582 >gi|153834153|ref|ZP_01986820.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] gi|148869523|gb|EDL68521.1| flagellar M-ring protein FliF [Vibrio harveyi HY01] Length = 580 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 99/558 (17%), Positives = 215/558 (38%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + +KE N+E++T L R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGTLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R G +S + I +++ G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +L + + +ALV +V L+ L A+++L N + E+ Sbjct: 454 PELEQMVDPPIWEHPNFNDWVRWFASALVIIVVILV---LVRPAMKKLLNPASGDEDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMNEN 579 >gi|269961618|ref|ZP_06175980.1| flagellar M-ring protein [Vibrio harveyi 1DA3] gi|269833659|gb|EEZ87756.1| flagellar M-ring protein [Vibrio harveyi 1DA3] Length = 580 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 99/558 (17%), Positives = 215/558 (38%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPATRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + +KE N+E++T L R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R G +S + I +++ G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDQNRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +L + + +ALV +V L+ L A+++L N + E+ Sbjct: 454 PELEQMVDPPIWEHPNFNDWVRWFASALVIIVVILV---LVRPAMKKLLNPASTDEDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMNEN 579 >gi|260776484|ref|ZP_05885379.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] gi|260607707|gb|EEX33972.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450] Length = 582 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 99/560 (17%), Positives = 211/560 (37%), Gaps = 29/560 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +F + L R ++L I + + L + F+V P L + ++ + Sbjct: 39 QSTSKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVREPEMRPL-GAYDTEELIPVL 97 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + +++++ +G++ISVP+S ++++ GL ++ +G E+ + FG++ Sbjct: 98 DYLDQEKVEYKL--DGNTISVPASDYNSLKLNMVRAGL-NNERQAGDEILMQDMGFGVSQ 154 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184 +++ + E ++A+ I+ + + ARV + +P F + +ASV + + Sbjct: 155 RLEQERLKLSRERQLAKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLRTGTS 214 Query: 185 YKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240 K +++ +VA+AVP + +TV D G+LL++ + + + + Sbjct: 215 LKQEEVDSVVDMVASAVPGMKPTRITVTDQHGRLLSSGSQDAASAARRKEHELERKQEQA 274 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I+ L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 275 LRDKIDSVLIPILGFGNYTAQVDIQLDFSAIEQTRKSFDPNTPSTRSEYTLEDYNNG--N 332 Query: 301 QPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P + + KE N+E++T + Sbjct: 333 VVAGVPGALSNQPPADASIPQDVAQMKDGSLMGQGSVHKEATRNFELDTTISHERRQSGI 392 Query: 354 LERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + R ++AV + G + Q D+ L I +++ A G + RGD + + SM Sbjct: 393 VNRQTVAVAIKNRASVNPDTGETTYQPLSDAELQSIRQVLIGAVGFSESRGDLLNVLSMQ 452 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F E ++ V + + +ALV + + + L R Sbjct: 453 FAEPEVEVLTDVPIWEHPNFNDWVRWFASALVII--------VVVLVLVRPAMKKLLNPA 504 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 L P G +D F S +L N + + + Sbjct: 505 SDDDDDQLYGPDGLPIGADGETSLIGGDMDGGELFEFGSSIDLP---NLHKDEDVLKAVR 561 Query: 533 HMIEINEERFAKILRKWARS 552 ++ E A++++ W Sbjct: 562 ALVANEPELAAQVVKNWMED 581 >gi|120598250|ref|YP_962824.1| flagellar MS-ring protein [Shewanella sp. W3-18-1] gi|146293672|ref|YP_001184096.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32] gi|120558343|gb|ABM24270.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1] gi|145565362|gb|ABP76297.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32] Length = 560 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 94/558 (16%), Positives = 210/558 (37%), Gaps = 24/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + S + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 EHKSGVMGSLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I ++I + I VP + ++ L+ G+ + + + + FG++ Sbjct: 76 DVLDKNKIKYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + ++P+A+V+I Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG DNF S V ++ + ++PD RS + S Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVE--NNSTGGT 309 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +E N+E++T T + R Sbjct: 310 TGGIPGALSNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRR 369 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ + G+ A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 370 ISVSVAVDFKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMD 429 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + ++ F + V + L++ + + + D+ V Sbjct: 430 QLMEDIPSPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDS----VN 481 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + L++ + N + + ++ Sbjct: 482 MPDDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 541 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 542 ANEPELSTQVVKNWLQDN 559 >gi|89075513|ref|ZP_01161924.1| flagellar M-ring protein [Photobacterium sp. SKA34] gi|89048785|gb|EAR54356.1| flagellar M-ring protein [Photobacterium sp. SKA34] Length = 582 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 97/550 (17%), Positives = 210/550 (38%), Gaps = 23/550 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L E ++ I + I Sbjct: 45 LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPL-GSYETEELIPILDHFDQKKIA 103 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+ ++ L GL ++ + G ++ + FG++ M+ Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTVEGDDILLQDMGFGVSQRMESERLKL 160 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191 + E ++AR I+ IS + A+V + P F + TA+V + + ++I Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249 +VA AVP L VTV D G+LL++ + + K + + + I+ L Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA---- 305 LG+ N+ S V ++ + YDP + RS +D Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSN 340 Query: 306 -VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 VE +P + + +E NYE++T ++R +++V V+ Sbjct: 341 QPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAVD 400 Query: 365 KGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 +T+ G ++ +A+I +++ G RGD + + S+ F + + Sbjct: 401 YKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFLEARGDLLEVLSVPFALPESQLAAD 460 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + S + ALV +V +++ + L + D + G +++ Sbjct: 461 LPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMANS 520 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 S + + F S + N + + + +++ + A Sbjct: 521 ADSVGLIGAELDGGE---------GFELSSSSLDLPNLHKDEDLLKAVRALVDNEPDLAA 571 Query: 544 KILRKWARSE 553 ++++ W + Sbjct: 572 QVVKSWVNED 581 >gi|224438214|ref|ZP_03659149.1| flagellar MS-ring protein [Helicobacter cinaedi CCUG 18818] gi|313144660|ref|ZP_07806853.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG 18818] gi|313129691|gb|EFR47308.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG 18818] Length = 569 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 109/573 (19%), Positives = 207/573 (36%), Gaps = 29/573 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-----HYDNLYVKL 55 M + Q K L + + +I+ + +V I F +YD L+ L Sbjct: 1 MDLKLIFEQISKVLNKLNKKQRIIILTTFVVIIAFLTYLVLFRVETKNEYENYDVLFSNL 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D I L + I ++I + + I VP V + RI L + GLP +S N G+++ Sbjct: 61 NPEDSAAILQRLQQDKIPYKIPQD-NIILVPKDKVYEQRISLGSLGLPKTSKNVGFDILL 119 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + N G T F Q++ + A + E+ARTI+S+ I A V+I MP F + G P+ASV Sbjct: 120 ENN-VGETPFTQDMKYLVAKQNELARTIESLKPIEKAIVNISMPKESLFVQGGHPPSASV 178 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNIL 227 I + + I+HLVAAAV L +V +++ G+LL ++ Sbjct: 179 KITVQDNMFLSIEQVVGIKHLVAAAVERLTPQNVKIINQDGELLGEDDEATQQSALGKQA 238 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 Q ++ +E I K L +G + V + + ++ V+ + V + Sbjct: 239 AFQRKYQQNAENAMEAKIVKFLKPSVGDG-VEAQVTMDFDFSVRKSVAEVFGQNPVVRGT 297 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 K+ + Q V N+ V K +E + E N EI+ Sbjct: 298 REYEKERKGFRPPQIGGVPGVVSNIGPVQGLK--DDEMMEWEKESEVVINNEIDKTVSDI 355 Query: 348 THDNYKLERLSIAVVVN--KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRG 403 L+R+S +V+++ G + + + + V A G N RG Sbjct: 356 KEHFGVLKRVSASVMIDGTYKEAVGEDGEPRLEYIPRSQEEMDKFLEGVKKAIGYNEARG 415 Query: 404 DTITITSMDFLENQLFNSGTVQVSFM-DILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 D + + +M F + L D + R+ + L +++ +++ + Sbjct: 416 DQVEVINMQFRNSLLDYRPKDSWELFSDKVERYLGPFMPLLKYVIVAVIIFIFYKKIVAP 475 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + E ++ + Sbjct: 476 FAERMLEVQEEEDDDIESLMQIDDGEDDVNKFSELRKRVEDQLGLSSGFDEDSI------ 529 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ ++I + + + + E++ Sbjct: 530 KYEVLLEKMRNVIAERPQEIGALFQTLIKDELD 562 >gi|154174065|ref|YP_001408875.1| flagellar MS-ring protein [Campylobacter curvus 525.92] gi|112803763|gb|EAU01107.1| flagellar M-ring protein FliF [Campylobacter curvus 525.92] Length = 567 Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats. Identities = 118/571 (20%), Positives = 227/571 (39%), Gaps = 27/571 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-----NSPHYDNLYVKL 55 M L Q + L + ++ A I+V + + + Y L+ + Sbjct: 1 MDFKALLHQISQIYQKLSLRQKIVAAGSIVVVVGFLVFLSIYKDMKGDTYAGYSVLFENI 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 +D I L++ ++ +++++ G +I VP+ V K RI +A G+P S G+E+FD Sbjct: 61 SPNDSALIIDQLNKDSVSYKLANEG-TILVPTGDVYKERIAVATLGIPKES-KIGFEIFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K FG T Q + RALEGE+ARTI+S+S I A V I +P F + + PTAS+ Sbjct: 119 K-QEFGSTDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQSPPTASI 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSL 231 ++ K I++LVAAAV NL+ +V +++ G L + + +++ + + Sbjct: 178 VVELKPGVSLSAKQIFGIKNLVAAAVTNLNTENVKIVNQDGVALGEEDGEFDSDMIAQQI 237 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + E I LA + G D + V + + D + + YDP++ V + Sbjct: 238 RYKREFETNYEQKIINVLAPIVGGTDRVVAKVNIDFDFDKKDSQSETYDPNNVVRSESNI 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + Q S ++ + N+ V E +K +Q+NYEI+ K Sbjct: 298 EEKRQGSAPNEIQGVPGAVSNIGPVQGL--SDSNIKEQYNKSSQQTNYEISKKITNIKGQ 355 Query: 351 NYKLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 + R+S AVVV+ K G + I ++ A G +++RGD Sbjct: 356 FASIVRVSAAVVVDGLYQPKKDEAGNPTGDIEYVALTQAQKDSITNLIKQAIGYSAQRGD 415 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 +T+ + +F + ++ FM + + L ++ LL+ + Sbjct: 416 EVTLDNFEFKLAKDVSTSQRMDGFM---HNYILPFVPLLKYIFAALLLYIFYKKVIVPFM 472 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + + A + + + + Sbjct: 473 QKMLEEAKDEDEPLPQDELEEIEIDAEDTLEKFKAARKKVEEQLGLSGDFNEDELR---Y 529 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ +I E A +L++ +++ + Sbjct: 530 DVLLEKMKTVILERSEEIANLLQEMVKNDND 560 >gi|260767706|ref|ZP_05876641.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|260617215|gb|EEX42399.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972] gi|315179462|gb|ADT86376.1| flagellar M-ring protein FliF [Vibrio furnissii NCTC 11218] Length = 580 Score = 306 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 209/551 (37%), Gaps = 30/551 (5%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 L R ++L I + + L + F+V P L E ++ + L + Sbjct: 47 MGDLDLLRQIVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYLDQQKQT 105 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+S ++++ GL + S +G ++ + FG++ +++ Sbjct: 106 YKL--DGNTILVPNSDYNSIKLNMVRAGL-NQSRQAGDDILLQDMGFGVSQRLEQERLKL 162 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++ + I+ + + ARV + +P F + +ASV + S K ++I Sbjct: 163 SRERQLGKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTLRTGSNLKQEEVDSI 222 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249 +VA+AVP + VTV D G+LL++ + K + + + + I+ L Sbjct: 223 VDMVASAVPGMTPTRVTVTDQHGRLLSSGSQDPVSAARRKEQELERKQEQNLRDKIDSVL 282 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG+ N+ + V EL+ + +DP++ RS +D + Sbjct: 283 IPILGLGNYTAQVDIELDFSAIEQTRKRFDPNTPATRSEYTLEDYNNG--NVVAGVPGAL 340 Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P + + KE N+E++T + R ++AV Sbjct: 341 SNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNFELDTTISHERKQTGVINRQTVAVA 400 Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V G +S L I +++ G N RGD + + SM F E ++ Sbjct: 401 VKNRSSVNADTGEVTYTPLSESELNSIRQVLIGTVGYNENRGDLLNVLSMQFAEPEMDQL 460 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 V + S + +ALV +V L+ L AL++L N ++ G L Sbjct: 461 ADVPIWDNPNFSDWIRWLASALVIIVVVLV---LVRPALKKLLNPAAEDDEQLYGPDGLP 517 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 G + + N + + + ++ E Sbjct: 518 IGADGETSLIGSDIEGGELFEFGSGIDLP---------NLHKDEDVLKAVRALVANEPEL 568 Query: 542 FAKILRKWARS 552 A++++ W ++ Sbjct: 569 AAQVVKNWMQN 579 >gi|261252322|ref|ZP_05944895.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891] gi|260935713|gb|EEX91702.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891] Length = 562 Score = 306 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 98/557 (17%), Positives = 207/557 (37%), Gaps = 29/557 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 22 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GVYETEELIPVLDYL 80 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + +D+++ G++I VP+S ++ + GL ++ +G ++ + FG++ ++ Sbjct: 81 DQQKLDYKL--EGNTILVPTSDFNTLKLDMVRAGL-NNEKQAGDDILLQDMGFGVSQRLE 137 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++++ I+ + + ARV + +P F + +ASV + + K Sbjct: 138 QERLKLSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 197 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 +++ +V++AVP + +TV D G+LL++ + + K + + + + Sbjct: 198 EEVDSVVDMVSSAVPGMKPNRITVTDQHGRLLSSGTQDAASSARRKEHELERKQEQALRE 257 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +L+ + +DP++ RS +D Sbjct: 258 KIDSVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVV--A 315 Query: 304 SAVTVEQNMPHVSDRKVPLPRS-------LENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + KE N+E++T + R Sbjct: 316 GVPGALSNQPPADASIPQDVAQMKDGSLLGQGSVHKEATRNFELDTTISHERRQTGVVNR 375 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++AV V + G + Q D+ L I +++ G + RGD + + SM F Sbjct: 376 QTVAVAVKNRAIVNPDTGETTYQPMSDAELNSIKQLLIGTVGFSEARGDLLNVLSMQFAV 435 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + V + + +ALV + + + L R Sbjct: 436 PETEAIADVPIWEHPNFNDWIRWFASALVII--------VVVLVLVRPAMKKLLNPASDE 487 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 L P G LD F S +L N + + + ++ Sbjct: 488 DDDQLYGPDGMPIGADGETSLIGGDLDGGELFEFGSSIDLP---NLHKDEDVLKAVRALV 544 Query: 536 EINEERFAKILRKWARS 552 E A++++ W + Sbjct: 545 ANEPELAAQVVKNWMQD 561 >gi|224825756|ref|ZP_03698860.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] gi|224601980|gb|EEG08159.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002] Length = 543 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 113/552 (20%), Positives = 215/552 (38%), Gaps = 26/552 (4%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R L+ V+ + + L + + + Y ++ E + L I +R+ Sbjct: 5 AVRTLLPLLVLAIGLTLAVTFWLWRDDARYKPVFGAQEKVVAADMMAVLDAEKIPYRLHP 64 Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + VP + +G+ R+ LAA+G+ + +G EL DK + G++ F+Q++ R LEGE Sbjct: 65 QTGQVLVPDADLGRVRMALAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRGLEGE 123 Query: 139 IARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 + ++I ++ + ARVH+ +P SF + + V ++ + A+ +LV Sbjct: 124 LTQSILALEPVQGARVHLSLPRSSSFVTAGEDKGSASVVVTLKPGRQLSNEQIAAVVNLV 183 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 A +V L+ VT++D G LL++ E + + E N+ L + Sbjct: 184 AGSVSTLNPAKVTLVDQAGNLLSSRIELAEGGQPAAESDAAKRYREEALENVRALLTPVI 243 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G DNF+ ++ AE++ D + Y + + + ++S N P Sbjct: 244 GADNFKVSITAEVDNDRVEETREKY---GEAPKITNEASREEKSNDKLALGIPGSLSNRP 300 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 +D P S+ K Y + + H +L RLS+AVV+N+ G Sbjct: 301 INTDSSAPAQESVGGNSKNAVTRQYAYDRSIMQIKHARGRLSRLSVAVVLNQAAAPAKGG 360 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 LA ++K++ GI + RGD + +T+M+F + D L Sbjct: 361 ------WQAEQLANVDKVLRNGLGIKAERGDALAVTAMNF---PGQVALEPWWQQRDTLL 411 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 + + + L+G LL+ L LR+ + V + P P+ Sbjct: 412 DGASWLAYGVALLLGYLLIARPLLKILRQWASRPQTAGALVPLAAQGQPEPLLLEPDEQP 471 Query: 494 M----PNDNIALDSSNQDIFSHSRNLQSRIN----SYVSKQSDLRLLHMIEINEERFAKI 545 +AL S L + L + ER A++ Sbjct: 472 AGTAPQGRPLALPEGPPTGASPVMPLLENYDLPPAGSSVDVLVDHLKGLAAKEPERVAEV 531 Query: 546 LRKWARSEIEDR 557 +++W + + ++ Sbjct: 532 VKQWVQKDGRNQ 543 >gi|119715006|ref|YP_921971.1| flagellar M-ring protein FliF [Nocardioides sp. JS614] gi|119535667|gb|ABL80284.1| flagellar M-ring protein FliF [Nocardioides sp. JS614] Length = 531 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 116/554 (20%), Positives = 207/554 (37%), Gaps = 33/554 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + L + TS + ++ ++ +V++P Y LY L SD + Sbjct: 5 LNRSLANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAASDASA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L +++++ GS++ VP V RI L+ QGLP SS GY L D + Sbjct: 65 IVDELDSQGTPYKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDNQD-IST 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AI 180 + F ++ RA+EGE+A TI+++ G+ A VH+ +P F PTASV+I A Sbjct: 124 SEFQEQTDFKRAMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDTAAG 183 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + +AI HLVA+++ LD +VTV DS+GK+L++++ V + Q + Sbjct: 184 TTFNAEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSFQQQ 243 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I L LG N V A+L+ D Y +KV + + + Sbjct: 244 TSQRIQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYDGPA 303 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 S+ V + + K+ S+ + + L + Sbjct: 304 GGSSSSGVVGPDGQMDSFGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTLHVG 363 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 VV++ V ++ +++A GIN RGDT+ +T+M F Sbjct: 364 VVLDTTAAQTVNPT------------DVQDLIAATVGINPDRGDTVQVTTMPFDRTADKA 411 Query: 421 SGTVQVSFMDILSRHFAT--VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + NA + + ++ L + ++ + V Sbjct: 412 AAAELAAATKAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREKTTTYLVEQLR 471 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + ++A AL+S+++ + L + + Sbjct: 472 NDAAERQAAAAVAIQNSPALEALESADRAG----------------DEMRRELADLADGQ 515 Query: 539 EERFAKILRKWARS 552 E A +LR W Sbjct: 516 PEDVAALLRGWLVE 529 >gi|319427071|gb|ADV55145.1| flagellar M-ring protein FliF [Shewanella putrefaciens 200] Length = 560 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 94/558 (16%), Positives = 209/558 (37%), Gaps = 24/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + S + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 EHKSGVMGSLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I ++I + I VP + ++ L+ G+ + + + + FG++ Sbjct: 76 DVLDKNRIKYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQ 131 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + ++P+A+V+I Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 191 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG DNF S V ++ + ++PD RS + S Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVE--NNSTGGT 309 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +E N+E++T T + R Sbjct: 310 TGGIPGALSNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRR 369 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ + G+ A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 370 ISVSVAVDFKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMD 429 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + ++ F + V + L++ + + + D+ V Sbjct: 430 QLMEDIPAPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDS----VN 481 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + L++ + N + + ++ Sbjct: 482 MPDDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 541 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 542 ANEPELSTQVVKNWLQDN 559 >gi|156975431|ref|YP_001446338.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116] gi|156527025|gb|ABU72111.1| hypothetical protein VIBHAR_03162 [Vibrio harveyi ATCC BAA-1116] Length = 580 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 99/558 (17%), Positives = 215/558 (38%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + +KE N+E++T L R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGTLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R G +S + I +++ G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +L + + +ALV +V L+ L A+++L N + E+ Sbjct: 454 PELEQMVDPPIWEHPNFNDWVRWFASALVIIVVILV---LVRPAMKKLLNPASGDEDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMDEN 579 >gi|163732487|ref|ZP_02139932.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och 149] gi|161393847|gb|EDQ18171.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och 149] Length = 504 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 128/515 (24%), Positives = 217/515 (42%), Gaps = 12/515 (2%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 +P+ LY LE + AL + F + G SI V SS + R+ LA++G Sbjct: 1 MATAPNMTLLYAGLENGAAGDVVTALEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEG 58 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP++S+ GYEL D ++ FG TS M + RA EGE+ARTI S I ARVHI Sbjct: 59 LPANSTR-GYELLDTLSGFGTTSQMFDAAYWRAKEGELARTIVSSPHIAMARVHIASTGS 117 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 F++ + + + + +AIR LV++AV L DV V+D+ G L+ + Sbjct: 118 NPFQRGVTPKASISVTPSGAAITPQQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNAD 177 Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281 +G + ++ + + L A +G N V + +++ IRE +DP+ Sbjct: 178 EVAPTIGG-----EDKADVLKARVQRLLEARVGFGNSVVEVSVDTVTESESIRERTFDPE 232 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 S+V S ++ S + VTV N+P S ++ E+ NYE++ Sbjct: 233 SRVAISTDT-EERNTSSSEAGGGDVTVASNLPDEDG--AGGENSSSQNNETRERVNYEVS 289 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + ++R+++AV+VN+ LT+ G + ++ L + +V++A G + Sbjct: 290 ETEREVLREPGAIKRVTVAVLVNEMTLTDEAGEQTVAPRDENELEALRDLVASAVGFDEA 349 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD ITI SM L + S M + + + + + TL++ + L Sbjct: 350 RGDIITIKSMGLQSVPLQGTAA-GTSLMSNFNIDVMSAVQMAILALVTLILGLFVVRPLL 408 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + ++DA + L + + I S Sbjct: 409 SRNGLNDAPAIAALPAAEGQTDGQGLDGEIDGDDFQLPDLPVISDFGDAGGELPDLNIGS 468 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 +S RL MI ++ +ILR W + E Sbjct: 469 GMSDDPVDRLRTMIGERQDETVEILRSWLEDKEES 503 >gi|24374740|ref|NP_718783.1| flagellar MS-ring protein [Shewanella oneidensis MR-1] gi|24349402|gb|AAN56227.1|AE015760_6 flagellar M-ring protein FliF [Shewanella oneidensis MR-1] Length = 553 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 95/559 (16%), Positives = 212/559 (37%), Gaps = 24/559 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 8 EHKSGVLGNLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 66 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I ++I + + VP + ++ L+ G+ S++ S + + + FG++ Sbjct: 67 DVLDKNKIKYQIDVD--VVKVPEDKYQEVKMMLSRAGI-DSAATSKQDFLTQDSGFGVSQ 123 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + A+P+A+V+I Sbjct: 124 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGL 183 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 184 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEY 243 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I+ L+ LG DNF S V ++ + ++PD RS + S Sbjct: 244 RTKIDSILSPILGHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVE--NNSTGGS 301 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + + +E N+E++T T + Sbjct: 302 TGGIPGALSNQPPMESNIPQEAATAATESVAAGNSHREATRNFELDTTISHTRQQIGVVR 361 Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 R+S++V V+ G+ A + + L I +++ A G +++RGD + + ++ F+ Sbjct: 362 RVSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFM 421 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + ++ F + V + L++ + + + D V Sbjct: 422 DQLVEDVPAPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDR----V 473 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + + L++ + N + + + Sbjct: 474 NMPEDGRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRAL 533 Query: 535 IEINEERFAKILRKWARSE 553 + E ++++ W + Sbjct: 534 VANEPELSTQVVKNWLQDN 552 >gi|71281873|ref|YP_268244.1| flagellar MS-ring protein [Colwellia psychrerythraea 34H] gi|71147613|gb|AAZ28086.1| flagellar M-ring protein FliF [Colwellia psychrerythraea 34H] Length = 563 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 86/567 (15%), Positives = 193/567 (34%), Gaps = 33/567 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F S S+ R + + + + + + + N P Y KL + Sbjct: 13 EQKSGFAASLGSVDILRQVTIVVALAICLAIAVFVIMLANEPEYRV-ISKLPTKQLITTM 71 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L ++++ ++ISVP+ ++ LA +GL + + G ++ K FG++ Sbjct: 72 DFLDANQVEYQ--QENNTISVPADEYQNVKLLLAREGL-TDEPSQGEDILMKDMGFGVSQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ E +IA+TI+ + I A+V + +P F + P+A+V++ Sbjct: 129 RLERERLKFGREQQIAKTIEQLKSISRAKVLLAIPRENIFARREKNPSATVVLTMQRGKI 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHE 240 + +A+ +VA+AV L VTV D G+LL + + I Q + E Sbjct: 189 LSEEEVDAVVDIVASAVQGLTPNRVTVTDQNGRLLNSGSQDSISSRSRKEFEIEQKREQE 248 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L +G+ N+ + V ++ + + Y+ D RS + Sbjct: 249 YMEKIDSILIPVVGLGNYTAQVDITMDFTNVEETQRRYNSDLPALRSEMSVESTNIGGAL 308 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNY--- 352 N P ++ + E NYE++ T Sbjct: 309 --GGIPGALTNQPPIASAIPEDATGGQKRSMPSRKHSESTKNYELDEAISHTKQQAGVVR 366 Query: 353 -----KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 V + + A I +++ + G + +RGD + Sbjct: 367 RVSVSVALDYVAGVATTPVEGGANTPAATFAPRSAGETASIRRLLQGSIGFDLQRGDVLE 426 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + + F V+ ++ + +++ + + + Sbjct: 427 VVTIPFNRPDYGVVAEIPIWQQP----WFIKVLKLVLGALVIIVLILAVVRPMLKRLIYP 482 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + G KS+ + L + + D +L + + Sbjct: 483 EQTPDDYGDKSLDGHIDLGDETMDMLTSDFDAGAVGFAADGSLQLPDL------HRDEDV 536 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 + ++ E +++++ W + Sbjct: 537 LKAVRALVANEPELSSQVVKSWLNEDE 563 >gi|294140203|ref|YP_003556181.1| flagellar M-ring protein FliF [Shewanella violacea DSS12] gi|293326672|dbj|BAJ01403.1| flagellar M-ring protein FliF [Shewanella violacea DSS12] Length = 571 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 94/553 (16%), Positives = 214/553 (38%), Gaps = 26/553 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + R + + + + + L + + P Y L +++ ++ ++ L + I+ Sbjct: 34 FGGVDMLRQITMILALAICLALAVFIMLWAQEPEYRPL-GQMDTQEMVKVLDVLDKNKIN 92 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++I+ + I VP ++ L+ +G+ S+SS + Y + + FG++ M++ Sbjct: 93 YQINVD--VIKVPEDQYQAVKLLLSREGIDSASSQNDY--LSQDSGFGVSQRMEQARLKH 148 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIR 192 + E +AR I+ + I A+V + +P F + A+P+A+V++ + +A+ Sbjct: 149 SQELNLARAIEELRSISRAKVILAIPKENVFSRNRAKPSATVVLNVRRGGLGQEEVDAVV 208 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALA 250 +VA+AV L VTV DS G+LL + + + L +VQ + E + L Sbjct: 209 DIVASAVQGLIPTRVTVTDSNGRLLNSGSQDAVSARARRELELVQQKEVEYRTKVQSILM 268 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 LG +NF S V ++ + Y+PD RS + S+ Sbjct: 269 PILGPENFTSQVDVTMDFTAVEQTSKRYNPDLPALRSEMTVE--NNSDGGSASGIPGALS 326 Query: 311 NMPHVSDRKVPLP-------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P + + + +E N+E++T T + R+S++V V Sbjct: 327 NQPPMESDIPQDALNAEETSSASRGSSHREATRNFELDTTISHTRQQVGTVRRVSVSVAV 386 Query: 364 NKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + G+ + + L+ I +++ A G +++RGD + + ++ F++ L + Sbjct: 387 DYKSGAAGEDGQINRVPRTELELSNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLLEEAP 446 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ F + V + L + + + + D+ K Sbjct: 447 APELWEQP----WFWRALKLGVGGMIILALILFIVRPMLKRLIYPDSANIPDEPKFGDEL 502 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 I + + L+ + + + + ++ E Sbjct: 503 AEIEDQFASDTLG----MLNRPEAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPELS 558 Query: 543 AKILRKWARSEIE 555 ++++ W + + + Sbjct: 559 TQVIKGWLQQDEQ 571 >gi|195952552|ref|YP_002120842.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1] gi|195932164|gb|ACG56864.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1] Length = 500 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 124/556 (22%), Positives = 237/556 (42%), Gaps = 64/556 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + L + +L +T+ +I+ S+ +V +L F + HY LY L D+ Sbjct: 1 MDYKEILNNLKERFQALNKTQQIIVLSIPVVLALLTGLIFFLTSRVHYAVLYGDLNNRDM 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I+ L + N+ ++I+ +G +I VP + R+ LAA GLP+ G++L +K+ Sbjct: 61 AAIAEQLEKDNVKYKITQDGRTILVPKQEARQLRLKLAAMGLPTKGYP-GFKLLNKMP-L 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IR 178 G+T FMQ + RALE E++ TI I A+V++ +P F +P+ASV ++ Sbjct: 119 GMTDFMQHVEYQRALEEELSNTILGFRNIEKAKVNLAIPKPSIFITQSQKPSASVFIELK 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQA 236 + AIR+LVAA+VP+L VTV+DS G LT N + + L + Sbjct: 179 PGASITRRQVIAIRNLVAASVPDLTPNRVTVVDSNGVDLTEELNNPSSYLTNEQLRVKTD 238 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 +++ I ++ + L LG +N R AV E + + + Y+P++ S + ++ Sbjct: 239 LENSITKHLEQVLGQALGYNNVRVAVDVEPDFSQVETKSKNYNPNTTAIVSQQKKQETTT 298 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + N+P +S + P + + KKE +NY+++ + +++R Sbjct: 299 GTSV--SGVPGTASNIPPMSGLR---PNANFQSTKKEVTTNYDVSVEKTHVVDKTIRIKR 353 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 +S+ V+VN + L I ++V AA G++ +RGDT+++ ++ F Sbjct: 354 MSVGVIVN-------------ADLKNVNLNSIRQLVIAAAGVDPKRGDTVSVIAVPFYRP 400 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + V +A A + L+ L + R+ + + Sbjct: 401 VVPKPPIYVV---------YAKYGIAGILLLLLLGILLFVFLKTRKKPEVRELPAVSAAM 451 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 +++ S + + +++ + + Sbjct: 452 EALESLETEELREKAKEL-------------------------------ITVDKMIKVTK 480 Query: 537 INEERFAKILRKWARS 552 N ++ AKI++ W S Sbjct: 481 ENPDKVAKIIKHWLSS 496 >gi|254461781|ref|ZP_05075197.1| flagellar M-ring protein FliF [Rhodobacterales bacterium HTCC2083] gi|206678370|gb|EDZ42857.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium HTCC2083] Length = 567 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 98/569 (17%), Positives = 212/569 (37%), Gaps = 30/569 (5%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 +S + + + + + + P L+ L S+ + AL Sbjct: 4 LRSFYRQPAIQRAFPVVAAVFLVAIGLFFYVTLQVPDRTTLFASLPESEKPAVMEALRAN 63 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 D +I ++VP +R+ LA+QGLP +S GY + G + ++ + Sbjct: 64 GTDVQIDPITGEMTVPVGDYHNSRLSLASQGLP-TSMPDGYSVL-SDMPMGTSRSVERMR 121 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188 ++ E E++ +I +I + +RVH+ +P+ +F + PTASV ++ + Sbjct: 122 LKQSQELELSLSIDNIDVVAGSRVHLAIPERSAFARNAQNPTASVFVQLKLGRALSSQQV 181 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246 +AI HLV+++V NL VTV+D G+LL+ ++ + + L ++ I Sbjct: 182 QAIVHLVSSSVANLPKSAVTVIDQNGRLLSDSVDDPATTLADRQLDYQLKLEDIYRRRIE 241 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +G N + V +++ +++ + + PD S + + + + S S+ Sbjct: 242 SLLTPVVGPGNVSAQVSLDIDFTRREVTQDMVVPDQSALLSEQSALEEEISAPSR--GVP 299 Query: 307 TVEQNMPHVSDRK-------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 N P S NYE++ K + + Sbjct: 300 GAFTNTPPQMPSFERRVESNGEEGDAQAEESSSAKMRSSNNLRNYEVSRKVSSESSPMAL 359 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGDTITI 408 L + +AV++ + + + EI +V++ GIN+RRGDT+T+ Sbjct: 360 LTGVHVAVLLRELSPIGESVEGGEAPLMQIGIDPEKIEEIKALVASTVGINARRGDTLTV 419 Query: 409 TSMDFLENQLFNSGTVQ-VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 +SM ++ ++ + + ++ L +VT + L L + Sbjct: 420 SSMPYISSESILASMSNREPAQWHEDEWVREMARNMLILAVLAIVTLGIVKPL--LTQLF 477 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 GK ++S + M + +++ S Sbjct: 478 ATPSEGAAGKILMSDDDDIIDMDAIEMEAGQSLEYIKAKLKSKRGIISAEMLDTANSYDD 537 Query: 528 DLR-LLHMIEINEERFAKILRKWARSEIE 555 + + M++ + R + + + ++++ Sbjct: 538 KIALIRMMVDDDAGRVSNVFKGMMENDMD 566 >gi|218778522|ref|YP_002429840.1| flagellar M-ring protein FliF [Desulfatibacillum alkenivorans AK-01] gi|218759906|gb|ACL02372.1| Flagellar M-ring protein FliF [Desulfatibacillum alkenivorans AK-01] Length = 520 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 125/558 (22%), Positives = 222/558 (39%), Gaps = 49/558 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + + S+ R + L V+ + F A F+ +P Y L+ +L D + Sbjct: 1 MNDLLQRIAQIFQSMTPGRRIALVVVLAGLVAAFAAMFFWAGTPEYQVLFSQLSQEDAGK 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I ++++ G+++ VP V + R+ LAA+GLP S G+E+FD+ +SF Sbjct: 61 IVSKLQEQRIPYQLAQGGTAVLVPGEQVYELRLSLAAEGLPKGGS-VGFEIFDE-SSFST 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 T F+Q++ RAL+GE++RTI + + +A+V IV F + + TASV++ + P Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQFNEVRSAKVLIVPAKDTVFVETTSPATASVLLDLVRP 178 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQ 238 I +LVA AV L VTV+D+TGK+ + L + Q + Sbjct: 179 LSSGQVSGIVNLVANAVEGLGTEQVTVVDTTGKVWFKGAGEGDDAALAANNRLEMQQQTE 238 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + ++ L +G V AE++ D ++ E YDPDS V RS + + + Sbjct: 239 DRLAKHVQSMLEQIVGPGKAIVRVRAEMDFDQEEYSEETYDPDSVVVRSQQK-RTEDTVK 297 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + V N P ++ T K++E +N EIN T + RLS Sbjct: 298 ETPGGATVNTMNNQPGMASGAALGQS---RTQKQDEVTNNEINRVQRRVTKVLPTITRLS 354 Query: 359 IAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +A V++ T + + L + IV A G + R D +T++S F Sbjct: 355 VAAVLDGTYKTVENQDGVSTAQFVPRTAEELKQFEGIVKNAMGYSEDREDQVTVSSFQFT 414 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + ++++ + + LL + + + + +K E Sbjct: 415 SLPGADMAAAEAP--SAITKYLNMYGKWALLTLLMLLTFVFVVRPILKSVKPPEPEKEET 472 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + A + LR + Sbjct: 473 QALEHQEMALLPEAPEEIDIS---------------------------------LRARQL 499 Query: 535 IEINEERFAKILRKWARS 552 E+ +++R W Sbjct: 500 ALDEFEKAEQLVRGWLGE 517 >gi|117919790|ref|YP_868982.1| flagellar MS-ring protein [Shewanella sp. ANA-3] gi|117612122|gb|ABK47576.1| flagellar M-ring protein FliF [Shewanella sp. ANA-3] Length = 561 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 94/558 (16%), Positives = 213/558 (38%), Gaps = 23/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + S + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I ++I + + VP + ++ L+ G+ S ++++ + + + FG++ Sbjct: 76 DVLDKNKIKYQIEVD--VVKVPEDKYQEVKMMLSRAGVNSPAAST-QDFLTQDSGFGVSQ 132 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + ++P+A+V+I Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 192 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGISARARRELELVQQKEAEY 252 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I+ L+ LG DNF S V ++ + ++PD RS + S Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVE--NNSTGGS 310 Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P D +E N+E++T T + R Sbjct: 311 TGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ G+ A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + ++ F + + + L++ + + + D+ V Sbjct: 431 QLVEDVPAPELWEQP----WFWRAVKLGIGALVILVLILAVVRPMLKRLIYPDS----VN 482 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + L++ + N + + ++ Sbjct: 483 MPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 542 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 543 ANEPELSTQVVKNWLQDN 560 >gi|309388817|gb|ADO76697.1| flagellar M-ring protein FliF [Halanaerobium praevalens DSM 2228] Length = 512 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 137/552 (24%), Positives = 242/552 (43%), Gaps = 55/552 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + ++ T L ++ +++ + ++ F F S +Y L+ L SD I L Sbjct: 10 EEVKETWTKLNKSVQILIIILTILMAGAFGYLIFRGASSNYQPLFTNLSTSDTAAIVERL 69 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 E +D+++ NG++I VP S + + R+ +A+ GLP G+E+FD + FG T F + Sbjct: 70 DENQVDYKLGGNGNTILVPESEIHRLRLDMASAGLPDQGV-VGFEIFDSSD-FGTTEFER 127 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 + RAL GE++R+IQSISGI ARV I P+ F TASV+++ Sbjct: 128 RVNYYRALGGELSRSIQSISGIEFARVQITPPEESLFLDEEKSATASVVVKLSAGYKMSS 187 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIE 242 + A+++LVA+ V +L + +VT++D+ G LL+ E R ++ +I + + ++ Sbjct: 188 ERVRAVQNLVASGVQDLPLEEVTLVDTNGNLLSKPVNSEDGRWSDPQNFAIQKEFESALK 247 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ- 301 ++ L LG +NF V A+LN D + Y P IR + S+ + Sbjct: 248 NDLRVLLTKVLGPNNFAVQVNAKLNFDQRHSESKTYAPVIDDSGIIRSQEVNTESQENGI 307 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 A + N+P + D++ +NYEIN + + ++ERLS++V Sbjct: 308 NGGAPGTDANIPQYQA---EGTGEASSYDRENTITNYEINERIEEHIYAPGEVERLSVSV 364 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +++ Q + +A+I V AA G N RGD + I+S+ F ++ + Sbjct: 365 MLD-------------QDTDEEKIAQIRNAVGAAIGYNEDRGDVLNISSIAFDDSMEVAA 411 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + R I A + L+ +L + L ++ R+ + D +++ E+ Sbjct: 412 QEAMEAQQAAERRQM--YIYAGLILLVLILTSALIIYLYRKKPSSDQSEQLELA------ 463 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 D I L N D + L +MI + E Sbjct: 464 ----------AEGDEDEIDLFEPNADQ-------------KKRAKVKNELENMIHSDPEN 500 Query: 542 FAKILRKWARSE 553 AK++R W E Sbjct: 501 AAKLIRSWIVDE 512 >gi|127512297|ref|YP_001093494.1| flagellar MS-ring protein [Shewanella loihica PV-4] gi|126637592|gb|ABO23235.1| flagellar M-ring protein FliF [Shewanella loihica PV-4] Length = 565 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 95/550 (17%), Positives = 220/550 (40%), Gaps = 22/550 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + R + + + + + L + + P Y L K++ ++ ++ L + ++ Sbjct: 29 FGGVDMLRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMDTQEMVQVLDVLDKNKVN 87 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 ++I + + VP ++ L+ G+ +S S Y K + FG++ M+ Sbjct: 88 YQIDVD--VLKVPEDQYQDVKMMLSRAGIDNSPSRDDY--LSKDSGFGVSQRMEAARLKN 143 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSAEAIR 192 + E +ARTI+ + + A+V + +P F + ++P+A+V++ + ++I Sbjct: 144 SQEQNLARTIEELKSVSRAKVILAIPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIV 203 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALA 250 +VA+AV L+ VTV D+ G+LL + + L +VQ + E I L Sbjct: 204 DIVASAVHGLEPTRVTVTDANGRLLNSGSQTAGSARARRELELVQQKEAEYRSKIESILM 263 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA----- 305 LG +NF + V ++ + + Y+PD RS ++ ++ + Sbjct: 264 PILGPENFTAQVDVNMDFTSVEQTAKRYNPDLPAVRSEMTVENNSTGASTGGIAGALSNQ 323 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 +E N+P + ++L + KE NYE++T T + R+S++V V+ Sbjct: 324 PPMEANIPQQATGTSAQEQTLPGSSHKEATRNYELDTTISHTRQQVGVVRRVSVSVAVDF 383 Query: 366 GRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G+ + + L+ I +++ A G N++RGD I + ++ F++ + + + Sbjct: 384 KTGPAGEDGQVTRVARTEQELSNIRRLLEGAVGFNTQRGDMIEVVTVPFMDQLVEEAPAL 443 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + F I ++ + L++ + + + D +K S Sbjct: 444 AIYEEP----WFWRAIKLVMGGLIILVLILFVVRPMLKRLIYPDGQK----MPDAPSLGD 495 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + + + L+ + + + + + ++ E + Sbjct: 496 ELAEIEDQYAADTLGMLNRPDAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPELSTQ 555 Query: 545 ILRKWARSEI 554 +++ W + Sbjct: 556 VVKGWLQENE 565 >gi|296534177|ref|ZP_06896667.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] gi|296265497|gb|EFH11632.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] Length = 525 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 210/472 (44%), Gaps = 13/472 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + +S +LG R+ LA L+ + L + LY L+ D +I A Sbjct: 33 LGRAIESLRALGTARLAALAFTGLLTLGLIGFLTLRTATTPMGLLYGDLDQRDAAQIVAA 92 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A + +R+ NG+ + P + + R+ LA GLP + + GYE+FD+ + T F Sbjct: 93 LERARVPYRLGRNGTEVLAPEEDIPRLRLSLARDGLP-AGGSVGYEIFDRQSGLTTTPFQ 151 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184 Q+I R+RALEGEIAR+I+ + G+ +ARVH+V+P F + ASV+++ Sbjct: 152 QDINRLRALEGEIARSIRGLDGVASARVHLVLPRREPFSRERGESQASVVLQMRGIHRLD 211 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIE 242 + +A+ HLVAAAVP L ++ V+D G+LL+ + I + + + Sbjct: 212 REGVQAVLHLVAAAVPGLKPQNIAVVDGRGELLSRGGQAGANGLAQSQEEIRRGQEMRMA 271 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + + L LG R+ E++ D Q E +DP+++V RS ++ R+ Q Sbjct: 272 RAVEEMLERILGPGRVRAEATIEMDHDRVQTTEERFDPENQVPRSQSSVNESSRNGEQQN 331 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 S P P + ++EE NYEI + T D + RLS+AV+ Sbjct: 332 VSVANQLPGAPPAQQNSGPQSQEA----RQEETVNYEIGRTTRNTLRDQPVVRRLSVAVL 387 Query: 363 VNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN---QL 418 V+ G +A + + + I+ +V A G N RGD + + S+ F E Sbjct: 388 VDGVWEPGEAGGAARFRERTPQEMERISALVRGAIGFNETRGDRLEVVSLRFAEPVWGSD 447 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 S + + A ++ + ++ + LL F + + Sbjct: 448 GESQRGPLGLPPLTPTLTARLLESALYALVALLAVFFVGRPVAKRLVAGMTP 499 >gi|330445366|ref|ZP_08309018.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489557|dbj|GAA03515.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 582 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 99/552 (17%), Positives = 211/552 (38%), Gaps = 27/552 (4%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L E ++ I + I+ Sbjct: 45 LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPL-GTYETEELIPILDHFDQKKIE 103 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +++ +G++I VP+ ++ L GL ++ + G ++ + FG++ ++ Sbjct: 104 YQL--DGNTIRVPAEEYSAIKLDLTRSGL-NTRTVEGDDILLQDMGFGVSQRLESERLKL 160 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191 + E ++AR I+ IS + A+V + P F + TA+V + + ++I Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249 +VA AVP L VTV D G+LL++ + + K + + + I+ L Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQSLREKIDAIL 280 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG+ N+ S V ++ + YDP + RS +D T Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPATAATRSEFTLEDINGGNTV--SGIPGAL 338 Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P V + + +E NYE++T + R +++V Sbjct: 339 SNQPPVDSAIPQNVKDMQSGSGGADGSVHRESTRNYELDTTISHKRAQTGTIARQTVSVA 398 Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ +T+ G ++ +A+I +++ G + RGD + + S+ F + + Sbjct: 399 VDYKTITDPATGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFALPESQVA 458 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + + V ALV +V +++ + L + D + G IL+ Sbjct: 459 ADLPIWENPNFNNWVRWVAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPILA 518 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 S + + F S + N + + + +++ + Sbjct: 519 NTTDSVGLIGAELDGGE---------GFELSSSSLDLPNLHRDEDLLKAVRALVDNEPDL 569 Query: 542 FAKILRKWARSE 553 A++++ W + Sbjct: 570 AAQVVKSWVNED 581 >gi|302389658|ref|YP_003825479.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM 16646] gi|302200286|gb|ADL07856.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM 16646] Length = 517 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 118/568 (20%), Positives = 209/568 (36%), Gaps = 66/568 (11%) Query: 1 MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M +++L Q + S + + + L L+ I+ +F++ P Y L+ L + D Sbjct: 1 MEYVNKLKHQVSEFWNSRNKVQKISLILGALLVILTAGLLGYFISRPSYSPLFTNLSMQD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L + I ++I+D G +I V S V K R++LA +GLP G+ Sbjct: 61 AGEIVKRLEDMKIPYKIADGGKTILVESKDVYKTRLNLAQEGLPKGGV-LGFSDIFNKTK 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMI 177 G T + +++ +AL+GE+ RTI+ + + +ARVHIV P F + P+A+V + Sbjct: 120 LGTTDWERQLQYTQALQGELTRTIEEMEQVESARVHIVQPRESLFIEPNAQKEPSAAVFL 179 Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKS 230 + + I +LVA +V L ++T++D G++L+ + Sbjct: 180 KLKPGVEIAEEEIRGIINLVAHSVEGLKPENITIVDEFGRVLSNIPLSEEQNTKEEINSQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVE 285 L I Q +++ N+ L G N V A+LN D + + ++ P + Sbjct: 240 LVIQNNFQKQLQANVQSLLEQIFGPGNVAVRVNAQLNFDKKTVESRLFTPVSSETGDGIL 299 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 RS++ ++ S P N+P P N K E NYE+N Sbjct: 300 RSVQELREHFSGTGSVPTGNPGTGTNIPGYQ---QPNTNGTSNYQKTEVIRNYEMNESKE 356 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T +++L+++VVVN+ D +I +V A G + +R D Sbjct: 357 NVTVAPGTVKKLTVSVVVNR-------------DLNDEEKDKIATLVGNAIGYDIQR-DQ 402 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 IT+ M F RR Sbjct: 403 ITVEGMTFNNQLADILSKQLAEENQ------------------------------RREMQ 432 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + A+ M + +A + + + + ++ Sbjct: 433 RLLIIISAIAAAILFIIAHRIIAMKRRRMEEEKLAYELAAAQQAASQLSDDVSADNREVF 492 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 + + E AKILR W E Sbjct: 493 S---EIEKLARKRPEDVAKILRTWLNEE 517 >gi|89056671|ref|YP_512122.1| flagellar MS-ring protein [Jannaschia sp. CCS1] gi|88866220|gb|ABD57097.1| flagellar M-ring protein FliF [Jannaschia sp. CCS1] Length = 583 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 131/577 (22%), Positives = 220/577 (38%), Gaps = 41/577 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + + R +L I ++ + + P + LY L+ + + A Sbjct: 17 LNALLEIWNGMNGRRRGLLIGGIAALAVVLVILTRIASQPSFQLLYSGLDPAAAGEVVDA 76 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L+ + RI +G I V ++ + R+ LA +GLP++ GYEL D ++ FG TS M Sbjct: 77 LAARGVAHRI--DGDQIFVDATQRDELRMALAGEGLPANG-PQGYELLDSLSGFGTTSQM 133 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE++RTI + I AARVHI P F+ + + A Sbjct: 134 FDAAYWRAKEGELSRTILASPAIRAARVHIANPSSDPFQPTNEVTASVAIRPASGGLAPG 193 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 A A+R+LVA++VP L +VTV+D +G++L ++ N+ Sbjct: 194 HAHALRYLVASSVPGLRPENVTVIDADSGQVLGGQGQMTPAAD-----AAGRATTLQQNV 248 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + LAA +G N V EL + I E V DP+S+V + + S Sbjct: 249 ERLLAARVGPSNAVVQVSVELETARETILERVIDPESRVIIATDTEEMDNASTDGAAAGV 308 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 TV N+P S T + E+ ++++ + + R+++AV+VN Sbjct: 309 -TVASNLPDGDG--AAGEGSSAQTTESRERVTFDMSELQREVEREPGDIRRITVAVLVNG 365 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 G + + + L + ++V +A G + RGD +TI SM F + + + Sbjct: 366 VEEINASGVAETIPRPAAELDALTELVRSAVGYDEARGDIVTIQSMAF--DAAAATELTE 423 Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485 F D L+ ++ L+ L + F L L D + P P Sbjct: 424 AGFADRLNLDVGQIVQTLLLAAVALAIAFGLLRPLLARSGGDSLNTLPPLEPTNGLPAPS 483 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS------------------------ 521 AV+ D + S + + + Sbjct: 484 DGAVSGDTSLPTTSTADVPEITMASTAPKELPPLPAVSQMGSAFDDALPMMMAGSLPGDL 543 Query: 522 ---YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 RL +I+ EE +ILR W + E Sbjct: 544 EQNLEDMDPVDRLRLLIQEREEETVQILRSWMNEDEE 580 >gi|113969625|ref|YP_733418.1| flagellar MS-ring protein [Shewanella sp. MR-4] gi|114046855|ref|YP_737405.1| flagellar MS-ring protein [Shewanella sp. MR-7] gi|113884309|gb|ABI38361.1| flagellar M-ring protein FliF [Shewanella sp. MR-4] gi|113888297|gb|ABI42348.1| flagellar M-ring protein FliF [Shewanella sp. MR-7] Length = 561 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 95/558 (17%), Positives = 210/558 (37%), Gaps = 23/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + S + R + + + + + L + + P Y L K+E ++ ++ Sbjct: 17 ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I ++I + + VP + ++ L+ G+ S++ S + + + FG++ Sbjct: 76 DVLDKNKIKYQIDVD--VVKVPEDKYQEVKMMLSRAGI-DSAAASSKDFLTQDSGFGVSQ 132 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183 M++ + E +AR I+ + + A+V + +P F + A+P+A+V+I Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGL 192 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241 +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 252 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I+ L+ LG DNF S V ++ + ++PD RS + S Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVE--NNSTGGS 310 Query: 302 PESAVTVEQNMPHVSDRKVP-----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + +E N+E++T T + R Sbjct: 311 TGGIPGALSNQPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V V+ G+ A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + ++ F + V + L++ + + + V Sbjct: 431 QLVEDVPAPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYP----DNVN 482 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + L++ + N + + ++ Sbjct: 483 MPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 542 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 543 ANEPELSTQVVKNWLQDN 560 >gi|197334317|ref|YP_002156678.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11] gi|197315807|gb|ACH65254.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11] Length = 577 Score = 303 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 90/558 (16%), Positives = 203/558 (36%), Gaps = 34/558 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + + +L R +IL + + + L + F+V P L E ++ ++ L Sbjct: 41 SKLDSALGNLDLLRQVILVLSVSICVALIVMLFFWVQEPEMRPL-GVYETDELIQVLDHL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++++ +G++I VP+S K + L+ GL + G ++ + FG++ ++ Sbjct: 100 DAQKAEYKL--DGNTILVPASEFSKMNLDLSRAGLNK-AVGEGDDILLQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 + + E ++A T + + I A+V + MP F + +A+V + Sbjct: 157 QERLKLSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQ 216 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 + ++I +VA+AVP + VTV D G+LL++ + K + + + + Sbjct: 217 EEVDSIVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRD 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG+ N+ + V ++ + +DP + RS +D Sbjct: 277 KIDAILIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVI--A 334 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P V + + KE N+E++T + R Sbjct: 335 GVPGALSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVAR 394 Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + + + G + L +I +I+ + G+N +RGD + + S+ F Sbjct: 395 QTVSVAIKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAI 454 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + V + + + L + + V + + + + E Sbjct: 455 EEQPIAIDVPIWENPNFNDW----VKWLAGALVIIAVILVLVRPAMNKLLFPNQAEDEAL 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + + L + N + + + ++ Sbjct: 511 ANAERNAEGEMGLIGSDLDGDGFEFGSG------------IDLPNLHKDEDLLKAVRALV 558 Query: 536 EINEERFAKILRKWARSE 553 E A+++R W Sbjct: 559 ANEPELAAQVVRNWVSEN 576 >gi|59712459|ref|YP_205235.1| flagellar MS-ring protein [Vibrio fischeri ES114] gi|59480560|gb|AAW86347.1| flagellar M ring protein FliF [Vibrio fischeri ES114] Length = 577 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 91/558 (16%), Positives = 203/558 (36%), Gaps = 34/558 (6%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + + +L R +IL + + + L + F+V P L E ++ ++ L Sbjct: 41 SKLDSALGNLDLLRQVILVLSVSICVALIVMLFFWVQEPEMRPL-GVYETDELIQVLDHL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 ++++ +G++I VP+S K + L+ GL + G ++ + FG++ ++ Sbjct: 100 DAQKAEYKL--DGNTILVPASEFSKMNLDLSRAGLNK-AVGEGDDILLQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 + + E ++A T + + I A+V + MP F + +A+V + Sbjct: 157 QERLKLSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQ 216 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243 + ++I +VA+AVP + VTV D G+LL++ + K + + + + Sbjct: 217 EEVDSIVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRD 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG+ N+ + V ++ + +DP + RS +D Sbjct: 277 KIDAILIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVI--A 334 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P V + + KE N+E++T + R Sbjct: 335 GVPGALSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVAR 394 Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V V + + G + L +I +I+ + G+N +RGD + + S+ F Sbjct: 395 QTVSVAVKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAI 454 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + V + + + L + + V + + + + E Sbjct: 455 EEQPIAIDVPIWENPNFNDW----VKWLAGALVIIAVILVLVRPAMNKLLFPNQAEDEAL 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + + L + N + + + ++ Sbjct: 511 ANAERNAEGEMGLIGSDLDGDGFEFGSG------------IDLPNLHKDEDLLKAVRALV 558 Query: 536 EINEERFAKILRKWARSE 553 E A+++R W Sbjct: 559 ANEPELAAQVVRNWVSEN 576 >gi|163801845|ref|ZP_02195742.1| flagellar M-ring protein [Vibrio sp. AND4] gi|159174353|gb|EDP59157.1| flagellar M-ring protein [Vibrio sp. AND4] Length = 580 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 100/558 (17%), Positives = 216/558 (38%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +GS++SV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGSTVSVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVSLTISTGVNLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQGLRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ T + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + +KE N+E++T L R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGTLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R+ G +S + I +++ A G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRVVNPDTGEVTYTPLSESEINAIRQVLIGAVGFDESRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 +L + + +ALV +V L+ L A+++L N + E+ Sbjct: 454 PELEQMTDPPIWEHPNFNDWVRWFASALVIIVIILV---LVRPAMKKLLNPASDDEDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMNEN 579 >gi|54307259|ref|YP_128279.1| flagellar MS-ring protein [Photobacterium profundum SS9] gi|46911679|emb|CAG18477.1| Hypothetical FliF Flagellar M-ring transmembrane protein [Photobacterium profundum SS9] Length = 560 Score = 302 bits (774), Expect = 7e-80, Method: Composition-based stats. Identities = 113/558 (20%), Positives = 226/558 (40%), Gaps = 36/558 (6%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 L TR+++L +I + + + + Y LY + E D +++ L + +D+ I Sbjct: 22 LTGTRLIVLLGLIAALVTTAVVIGLWQGNSQYRPLYGEQEKFDRSQVISVLEQQGMDYYI 81 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 ++ V VGKAR+ LAA G+ + +G ++ + +S G + F++ LE Sbjct: 82 EPQQGNVMVDRDSVGKARLALAAAGI-EAQLPAGLDILSQDSSLGTSQFIESARYRHGLE 140 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIRAINPSVYKSAEAIRH 193 GE+A +I ++ I RVH+ +P F + + + + + + AI + Sbjct: 141 GELALSIMALDAISNVRVHLAIPKKTLFVRREKEQPSASVVLSLSSGRELTTEQVTAIVN 200 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMNINKAL 249 LVA +VP+L+ V V+D G+LL++ L VQ ++ + L Sbjct: 201 LVAGSVPDLNAERVNVIDQKGRLLSSVINREGKHSRNSSSYLEYVQKLEQSYIKRAARML 260 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 +G+DNF+ V A++N D + E Y PD V R + Sbjct: 261 RPMVGIDNFQVEVAADINYDRTEATEESYAPDGSVRNEFSTI---DRRIGKAAQGVPGAL 317 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 N P ++ E +Y ++ T + +++ LS+++++N Sbjct: 318 SNRPPED---GEEEDPNAGNERSESSRDYALDRVLKHTLYQQGQVKSLSVSILLNGQ--- 371 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 LA I ++++ A GIN RGD +I F + + V +M Sbjct: 372 -------PDTFPPEQLANIKQMLADAIGINEVRGDQFSILVYPFTKAEANLLADEPVWWM 424 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 ++ + I L +V +++ L A+R+L + + +++ S + Sbjct: 425 QLIWLDYLRYI--LSAVVALVILLVLVRPAIRQLSGSNKSTALTAPNDKLVAITGESVSE 482 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS----------KQSDLRLLHMIEINE 539 T L + + +++ + + +L S + S + L + E Sbjct: 483 NTALNNDTSPEIEAVPATEKTETTSLSSVVTSENYLELPSPETGLEVQSSYLQMLSEKEP 542 Query: 540 ERFAKILRKWARSEIEDR 557 ER A ++++W + +D+ Sbjct: 543 ERVAHVVKQWITPKDDDK 560 >gi|323703169|ref|ZP_08114822.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM 574] gi|323531828|gb|EGB21714.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM 574] Length = 514 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 117/563 (20%), Positives = 217/563 (38%), Gaps = 60/563 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + + + + ++ V + + P Y L LE D Sbjct: 1 MNLKNLLDKLKQRWRETNQNKKALIILAGAVVLAGVFYLVLTLTRPRYAVLLGDLEPRDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L I ++++D G +I VP V + RI LA++GL + G+ELFDK + F Sbjct: 61 GNIVAQLESDKIPYQLTDQGKTIMVPEDQVDEVRIKLASKGL-LNGMGQGFELFDK-SKF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IR 178 G T F Q+++ RAL+ E+ RTI S+ G+ ARVH+V+P F P+ASV+ ++ Sbjct: 119 GETDFEQQVSYQRALQEELRRTITSVEGVEQARVHLVIPTKSVFLDDQGTPSASVVIKLK 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---------NILGK 229 + + + L+ +V L +V ++D+ G +L + + + Sbjct: 179 PGASLKPEQVKGLNDLIIGSVEGLKPENVHIIDTEGHVLNDFLKDSSDVAGAFGGTAVER 238 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 I +A + E+E + + L LG + + V A+L+ + QQ P Sbjct: 239 QQQIRRAYEKELENRVQQMLTKLLGPNKAVAMVTADLDFNQQQTNTTEVLPGP------V 292 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +S+ + + + T + + K ++ NY+ T+ + Sbjct: 293 VSERSTKESGNDAGGGGTAGSTAQMPGQSVPGINNGQSSYTKSDDIKNYQNGTRVQSVVQ 352 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 K+ RLS AVV+++ +I IV+AA G N +RGD IT++ Sbjct: 353 APGKVLRLSTAVVLDESVKNLDK-------------TQIQDIVTAAIGFNPQRGDQITVS 399 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 +M F ++L + ++ + +I A V LL T L Sbjct: 400 TMTFDHSELDLAKEMEQEAKQQDNIRLYLIIGAAAAGVLLLLTTIFML------------ 447 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + L+ + +D ++ + + + Sbjct: 448 ----------IRRRRRRQKAEQQLLQAQDAVVDEVAEEPPAPKWEIPPPV------DKQK 491 Query: 530 RLLHMIEINEERFAKILRKWARS 552 L + E A++L+ W + Sbjct: 492 ELKKIAEERPADIAQVLKVWLKE 514 >gi|37680665|ref|NP_935274.1| flagellar MS-ring protein [Vibrio vulnificus YJ016] gi|37199414|dbj|BAC95245.1| polar flagellar M-ring protein FliF [Vibrio vulnificus YJ016] Length = 581 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 98/555 (17%), Positives = 211/555 (38%), Gaps = 30/555 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 42 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GVFETEELIPVLDHL 100 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G++I V +S ++ + GL + S+ +G ++ + FG++ ++ Sbjct: 101 DQQKINYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLE 157 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++ + I+ + + A+V + +P F + +ASV + S K Sbjct: 158 QERLKLSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQ 217 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + VTV D G+LL + + K + + + + Sbjct: 218 QEVDSIVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALRE 277 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V E++ + +DP++ RS +D + Sbjct: 278 KIDSVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNG--NMVA 335 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +KE N+E++T + R Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVRKESTRNFELDTTISHERKQMGVINR 395 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++AV + G + ++ + I +++ G + RGD + + SM F E Sbjct: 396 QTVAVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAE 455 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + V + + +ALV +V L+ L A+++L N + E+ Sbjct: 456 PEQEQLADVPIWEHPNFNDWIRWFASALVIIVVILV---LIRPAMKKLLNPAGDDEDEMY 512 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + + + N + + + ++ Sbjct: 513 GPDGLPIGADGETSLIGSDIDAGELFEFG---------SSIDLPNLHKDEDVLKAVRALV 563 Query: 536 EINEERFAKILRKWA 550 E A++++ W Sbjct: 564 ANEPELAAQVVKNWM 578 >gi|78776673|ref|YP_392988.1| flagellar MS-ring protein [Sulfurimonas denitrificans DSM 1251] gi|78497213|gb|ABB43753.1| Flagellar FliF M-ring protein [Sulfurimonas denitrificans DSM 1251] Length = 566 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 123/571 (21%), Positives = 230/571 (40%), Gaps = 25/571 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56 M Q L + + LI++ ++ + + + Y+ L+ L Sbjct: 1 MDFKVLFSQLATLYDKLTKQQKLIISGAVVGIVAFIVFLVVYTEKRDALSKYETLFDSLS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D ++ L + NI + I DN + I VP + V K RI +A+ G+P +S G+ELFDK Sbjct: 61 SEDAAKVIEQLEKDNIPYEILDN-NIIKVPKNAVYKERIAIASLGIPKNSG-VGFELFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TSF Q + +RA+EGE++RTI S++ I +A V + +P F + PTASVM Sbjct: 119 -QEFGATSFDQNVKYLRAIEGELSRTINSLAPIESASVSLALPKETLFVEKQGEPTASVM 177 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSL 231 I K I++LV+AAVPNL +V ++D+ G+ L ++ + Sbjct: 178 ITLIEGRKLSSKQIRGIKNLVSAAVPNLSASNVMLIDNDGETLGDDDEMAQMGELSSVQQ 237 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + + + I + ++ F+ G + V E + Q VYDP++ V Sbjct: 238 NFKTKEEKKKQRKIIEVVSPFVGGEQKVVAQVTIEFDFSIQNSTSEVYDPENVVRSEQLS 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + S ++ N+ V +++E +K +NYE+ T + Sbjct: 298 EEKRDGSAPAEVGGVPGTVSNIGPVEGL--ASNKTIEKYEKNTGTTNYEVGKTVSTTKSE 355 Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGD 404 +++R++ AVVV+ ++ G+ + +S L + +VS + GI+ RGD Sbjct: 356 FARIKRVTAAVVVDGKYNYKSDADGKPTSELEYEALSESDLEALRALVSRSIGISEDRGD 415 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I++ ++ F ++ + T + L + V L L +++ Sbjct: 416 QISVQNLQFKRADSD----PSKERVNQVVSFSQTYLAPFSELFKYIFVLLLLLILYKKVI 471 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + E+ + PI + + Sbjct: 472 SPFAQRMLEISKEEDDIGKPILDIEDDEDEDLVEKVQSMRKKVEEQLGVGNHFNEDELKY 531 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ M + + E A +L+ E + Sbjct: 532 DVLLEKIKSMTDESPEAVAHVLQALLTEESD 562 >gi|213425006|ref|ZP_03357756.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 429 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 178/418 (42%), Gaps = 33/418 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 N P + + ++ E SNYE++ Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 T + +ERLS+AVVVN L + + +I + A G + Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSIN 425 >gi|294508650|ref|YP_003572709.1| flagellar M-ring protein [Salinibacter ruber M8] gi|294344979|emb|CBH25757.1| Flagellar M-ring protein [Salinibacter ruber M8] Length = 532 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 107/559 (19%), Positives = 213/559 (38%), Gaps = 46/559 (8%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + + L + + L + + I L + ++ + P Y L+ LE NR+ Sbjct: 5 LARIQQFLGRLSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRVVSR 64 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E + + + GS++ VP + + + R+ ++ G +GYELFD+ + G+T FM Sbjct: 65 LKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMTDFM 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY 185 Q++ RALEGE+A+T+ SI + ARVH+V P+ F +ASV++ Sbjct: 123 QKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGSLSQ 182 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIE 242 + + LVA AV L V V+D G +L+ + + + + ++++ ++ Sbjct: 183 AQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEEQLM 242 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 L +G DN V EL+ D + + DP+S S ++ + + Sbjct: 243 KQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREEGGGDEAGN 302 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N+E++ + + + RL+++VV Sbjct: 303 ----------------------------SNSVVRNFEVSRTTKRSEKSVGDVSRLTVSVV 334 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V++ R T G + + +A+I +V A G + RGD TI + Sbjct: 335 VDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGPAGP 394 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + R + ++ + +L + ++ Sbjct: 395 VAGDGGGETPMRLYLRY----GLILVAIGAAVWVARSLVQALTATPEEQPTPLQADESRQ 450 Query: 483 PPISSAVTTGLMPNDNIALDSS--------NQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +A + AL + DI+++ + +++ + + Sbjct: 451 VEGRTADGAVEEGDGPAALQETEEEEESLVKDDIYTNKLSDEAKARLEARSEMFEEIQDQ 510 Query: 535 IEINEERFAKILRKWARSE 553 +E N E+ A ++R W + Sbjct: 511 VEENPEQTADLIRSWLVED 529 >gi|83815862|ref|YP_446715.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855] gi|83757256|gb|ABC45369.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855] Length = 532 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 106/559 (18%), Positives = 213/559 (38%), Gaps = 46/559 (8%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + + L + + L + + I L + ++ + P Y L+ LE NR+ Sbjct: 5 LARIQQFLGRLSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRVVSR 64 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E + + + GS++ VP + + + R+ ++ G +GYELFD+ + G+T FM Sbjct: 65 LKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMTDFM 122 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY 185 Q++ RALEGE+A+T+ SI + ARVH+V P+ F +ASV++ Sbjct: 123 QKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGSLSQ 182 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIE 242 + + LVA AV L V V+D G +L+ + + + + ++++ ++ Sbjct: 183 AQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEEQLM 242 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 L +G DN V EL+ D + + DP+S S ++ + + Sbjct: 243 KQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREEGGGDEAGN 302 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N+E++ + + + RL+++VV Sbjct: 303 ----------------------------SNSVVRNFEVSRTTKRSEKSVGDVSRLTVSVV 334 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V++ R T G + + +A+I +V A G + RGD TI + Sbjct: 335 VDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGPAGP 394 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + R + ++ + +L + ++ Sbjct: 395 VAGDGGGETPMRLYLRY----GLILVAIGAAVWVARSLVQALTATPEEQPTPLQADESRQ 450 Query: 483 PPISSAVTTGLMPNDNIALDSS--------NQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +A + AL + D++++ + +++ + + Sbjct: 451 VEGRTADGAVEEGDGPAALQETEEEEESLVKDDMYTNKLSDEAKARLEARSEMFEEIQDQ 510 Query: 535 IEINEERFAKILRKWARSE 553 +E N E+ A ++R W + Sbjct: 511 VEENPEQTADLIRSWLVED 529 >gi|27365280|ref|NP_760808.1| flagellar MS-ring protein [Vibrio vulnificus CMCP6] gi|320155664|ref|YP_004188043.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O] gi|27361427|gb|AAO10335.1| flagellar M-ring protein FliF [Vibrio vulnificus CMCP6] gi|319930976|gb|ADV85840.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O] Length = 581 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 98/555 (17%), Positives = 210/555 (37%), Gaps = 30/555 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 42 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GVFETEELIPVLDHL 100 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G++I V +S ++ + GL + S+ +G ++ + FG++ ++ Sbjct: 101 DQQKINYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLE 157 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++ + I+ + + A+V + +P F + +ASV + S K Sbjct: 158 QERLKLSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQ 217 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + VTV D G+LL + + K + + + + Sbjct: 218 QEVDSIVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALRE 277 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V E++ + +DP++ RS +D + Sbjct: 278 KIDSVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNG--NMVA 335 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +KE N+E++T + R Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVRKESTRNFELDTTISHERKQMGVINR 395 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++AV + G + ++ + I +++ G + RGD + + SM F E Sbjct: 396 QTVAVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAE 455 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + V + + +ALV +V L+ L A+++L N E+ Sbjct: 456 PEQEQLADVPIWEHPNFNDWIRWFASALVIIVVILV---LIRPAMKKLLNPAGDDDDEMY 512 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + + + N + + + ++ Sbjct: 513 GPDGLPIGADGETSLIGSDIDAGELFEFG---------SSIDLPNLHKDEDVLKAVRALV 563 Query: 536 EINEERFAKILRKWA 550 E A++++ W Sbjct: 564 ANEPELAAQVVKNWM 578 >gi|332994121|gb|AEF04176.1| flagellar MS-ring protein [Alteromonas sp. SN2] Length = 564 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 98/559 (17%), Positives = 216/559 (38%), Gaps = 26/559 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F + S R + L V+++ + + + + P + L K+E ++ Sbjct: 23 ENKSGFMDTLGSADMMRQMALVVVLVICVAIAVFILIWAQEPDFRPL-AKMETQELIETL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + I++R+ G+++ V S R+ + QGL + SS++G ++ + FG++ Sbjct: 82 DYMDANQIEYRL--EGNTVYVRSDEFQTIRLGMTRQGL-TGSSDAGTDIIMQDMGFGVSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ A E +IA TI+ IS I ARV + MP F + + +A+V++ A Sbjct: 139 RVEMERLKHAREQQIAATIEDISSIQKARVLLAMPKENVFARREKKASATVVLTAKRGKV 198 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHE 240 + +++ +VA+AV N++ VTV DS G+LL + + + + E Sbjct: 199 IAGEEVDSVIDIVASAVQNMEPSAVTVTDSNGRLLNSGSQDSLSARARKEYEIERQREQE 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS +++ S Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVSMDFTALEQTQRSYNPDLPAVRSEMINEQ--NSVGG 316 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSL-----ENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + P + + K NYE++T T + + Sbjct: 317 GAMGIPGALTNQPPLDSNIPENPEAGAQATLPGSTSKVSTRNYELDTTISHTKKQSGVIR 376 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS++V V+ ++ G ++ + + L I +++ G + RGD++ + S+ F Sbjct: 377 RLSVSVAVDYLQVAGEDGTTSAEPRNQEALLNIRRLLQGGVGFDVTRGDSLEVVSVPFTR 436 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + F ++ ++ + +++ + + R D K Sbjct: 437 MDDGVIEDAPIWEQPA----FLPILKLVIGGLVIIVLIIFVIRPMLRRLINPDESKEA-- 490 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + G ++ D + + + + + + ++ Sbjct: 491 -----DDFDADEGLDLGDETISMLSTDFDEGQVGFAADGSLMLPDLHKDEDVLKAVRALV 545 Query: 536 EINEERFAKILRKWARSEI 554 E A++++ W + Sbjct: 546 ANEPELSAQVVKGWLMQDE 564 >gi|149908770|ref|ZP_01897431.1| flagellar M-ring protein [Moritella sp. PE36] gi|149808312|gb|EDM68251.1| flagellar M-ring protein [Moritella sp. PE36] Length = 580 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 110/573 (19%), Positives = 214/573 (37%), Gaps = 31/573 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + + L R R L ++ I + A + + Y LY K E+ D Sbjct: 22 IKNMRSGLKLTREKLYRFRSLFFIGLLSSLIAAAIVASLW-TAEQYVPLYGKQEMYDKAN 80 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + DF++ I V S + + R+ LAA G+ + G + G Sbjct: 81 ILELLEQQKADFQLDTESGQILVAKSQLAQLRMALAALGV-KKNIPMGMGGLEGKMGLGT 139 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181 + FM+ + ALEGE+A +I +I + ARVH+ +P+ F + + +ASVM+ Sbjct: 140 SQFMESKSYRFALEGELALSIITIDAVRNARVHLALPERTLFIGRHEEQASASVMLDLQP 199 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIVQ 235 AI +LVA++V NL +++V+D G+LLT + + + + ++ Sbjct: 200 GRELSQGQVSAIINLVASSVTNLKPDNISVVDQAGRLLTLSGSQSSNRGQVATQQVTFKN 259 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + I++ L +G +NFR + A+L+ + + P++ + + + Sbjct: 260 DLEARLTRRISELLYPLVGAENFRIQLTADLDFNEVEETVETVSPETVLTKENIREQV-- 317 Query: 296 RSETSQPESAVTVEQNMPHVSDRK-------VPLPRSLENTDKKEEQSNYEINTKSIATT 348 S N+P V S T + + Y + + Sbjct: 318 -SGDVNAVGIPGSLSNLPPVKKVTKKGKKTASSEAESSMITKRNDYSKEYVVGRSVMHKK 376 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++ ++ LS++V++N T G D LA+I+ + A GI + RGD + I Sbjct: 377 YEFGRINNLSVSVILNNKIATGKEG------WSDEELAKISITIKNAIGIVASRGDQLNI 430 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + DF+ + MD++ + +V + L + + L + Sbjct: 431 SGYDFIAVPEITLEALPWWQMDVIQ----AYLRYIVITILGLALIMFVIRPLTKHFVSQL 486 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD--IFSHSRNLQSRINSYVSKQ 526 + S + + D + S + + Sbjct: 487 RQADNAALASTEQTSEAKTNSLNTDIKPDELTKASKPVNMTELTSVEMPALPAPGSEFSV 546 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559 L + + R A++L+ W +S + Sbjct: 547 QLNHLQILADKEAVRVAEVLKGWVKSNGGSQNE 579 >gi|167576644|ref|ZP_02369518.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH] Length = 531 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 110/535 (20%), Positives = 209/535 (39%), Gaps = 20/535 (3%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 LI V+ + + + +Y L+ E ++ + AL I +RI + Sbjct: 9 RLIPVVVLAIALTAAATLYMRYDQANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTG 68 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 + V S V +AR+ LAA+G+ + ++ G E D+ + G + F+Q++ R LE E+A+ Sbjct: 69 QVLVARSDVARARMMLAARGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQ 127 Query: 142 TIQSISGIVAARVHIVMPDMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 +I ++ + ARVH+ + + + + ++ + A+ +LVA + Sbjct: 128 SIATLDPVERARVHLSIAKSSSFVMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGS 187 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 VPNL G V+V+D G L+A L + I + ++ N+ LA LG NF Sbjct: 188 VPNLAPGKVSVVDQHGAFLSARVDLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNF 247 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 R +V A +N D + + + + + + +++ N P Sbjct: 248 RVSVTAVVNNDRVEETREQF---GEAPKVMSEATRNEQNRDRVALGVPGSLSNRPVDVP- 303 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 P + + + + + +LE+LS+AVV+N + + Sbjct: 304 -ASGPDADSGSRRNATTRQFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----TKGK 357 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 L I+ I+ + GI+ +RGD + ++S+DF D L + Sbjct: 358 PWQPDQLRRIDDILRSGLGIDKQRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWY 414 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + AL L G LL+ L L++ S L P A P+D Sbjct: 415 LTYALAALFGYLLLARPMLRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDA 474 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + L + E ER A+++++W R++ Sbjct: 475 RPPLGAMLPLLDDVELPPAD---SGVEVLIGHLRSLSEKEPERVAEVVKQWIRND 526 >gi|239996428|ref|ZP_04716952.1| flagellar MS-ring protein [Alteromonas macleodii ATCC 27126] Length = 564 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 96/559 (17%), Positives = 209/559 (37%), Gaps = 26/559 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F + S R + L V+++ + + + + P Y L K+E ++ Sbjct: 23 ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + ID+++ G+ + V S R+ + QGL +S ++G ++ + FG++ Sbjct: 82 DYMDANQIDYKL--EGNIVYVRSDEFQNIRLGMTRQGLTKAS-DAGTDIIMQDMGFGVSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ A E +IA TI+ I+ I ARV + MP F + + +A+V++ A Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLAMPKENVFARREKKASATVVLTAKRGAV 198 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHE 240 + +A+ +VA+AV N++ VTV DS G+LL + + + + E Sbjct: 199 IAGEEVDAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS + ++ S Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVTMDFTAMEQTQRSYNPDLPAVRSEMIMEE--NSVGG 316 Query: 301 QPESAVTVEQNMPHVSDRKVPLP-----RSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + +++ KE NYE++T T + Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS++V V+ ++ G + + I +++ G + RGD++ + S+ F Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + F ++ +V + +++ + + R D Sbjct: 437 MDAGEIEDAPIWEQPG----FLPILKLVVGGLVIIVLIIFVIRPMLRRLINPDESNDADE 492 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + ++ D + + + + + + ++ Sbjct: 493 FDADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLP-------DLHKDEDVLKAVRALV 545 Query: 536 EINEERFAKILRKWARSEI 554 E A++++ W + Sbjct: 546 ANEPELSAQVVKGWLMQDE 564 >gi|330505661|ref|YP_004382530.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] gi|328919947|gb|AEB60778.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01] Length = 560 Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 111/557 (19%), Positives = 213/557 (38%), Gaps = 27/557 (4%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75 L LI +VI + + + + + + LY E + L I++R Sbjct: 15 KLDPRMTLIGLAVIAALLAVGVVFYLWRDQGSFRPLYGAGEAYPAAEVMQVLDGDAINYR 74 Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 + + V +G+AR+ LAA+G+ +GYELFDK G + F+Q++ R+L Sbjct: 75 LHPQSGQVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRLKRSL 133 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIR 192 EGE+ART+ ++ G+ ARVH+ + + SF ++ + + + + + AI Sbjct: 134 EGELARTVMALKGVEGARVHLALQESSSFVVGKREPGKASVMLQLAPGYKLTPEQVSAIV 193 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 +LVA +VP L+ G+V V+D G LL+ ++ +V Q + N LA Sbjct: 194 NLVAGSVPQLEAGNVQVVDQYGALLSRGIDTLGGPVQNWQVVDDYQSKAVANAEAVLAPV 253 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV---- 308 LG N+R +V A+++ ++ Y + R + Sbjct: 254 LGGGNYRISVSADIDFSQKEETFQAY---GESPRLRNEVVRDESVLDQLALGVPGSLANR 310 Query: 309 ------EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N + + + +KE + + H + L + SIAVV Sbjct: 311 PPQPAPPANQQAQAGAQGENANQAATSLRKESNRQLDYDQSITHVKHAPFSLRQQSIAVV 370 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N E G E+ +V +A G N RGD +T++ F + + +G Sbjct: 371 LNAAVAPE-------GGWTPEAREELAAMVKSAVGFNQARGDLLTLSVFPFTDAGIGGAG 423 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILS 481 + + + + VF + +LL+ + + +R L + + Sbjct: 424 EDLLPWWENSK--VHDLAKLGVFALISLLLLLMVVRPAVRSLSQRNQTGLPAMAEGDDQL 481 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 A L + A ++ S ++ + L + + + ER Sbjct: 482 ALHAERAAERLLARVGDDAPGATVLGELSPLSEIRLPAPGSGLELQIEHLQMLAKNDPER 541 Query: 542 FAKILRKWARSEIEDRY 558 ++++++W D Sbjct: 542 VSEVIKQWIGRNERDLN 558 >gi|187778748|ref|ZP_02995221.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC 15579] gi|187772373|gb|EDU36175.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC 15579] Length = 526 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 99/566 (17%), Positives = 212/566 (37%), Gaps = 53/566 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGAVLQKLKDKKVEAKV--EGNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + +RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KKGQTISKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNADGNNTNGSIVDNNMVN---RTTQNNNGSETSSRDETTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + +A G + +RGD I+I Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRTAVRNLAVSAIGYDEKRGDAISIE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ N Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFVIKKRKN---- 456 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 +I +D S + + + + K Sbjct: 457 -----------------DEEYEEYEEGLDILIDDSGSETKQIPKFKPIDLEAQDEKTHVE 499 Query: 530 -RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 500 NEIRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|146277680|ref|YP_001167839.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] gi|145555921|gb|ABP70534.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025] Length = 572 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 123/566 (21%), Positives = 218/566 (38%), Gaps = 31/566 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + ++ + R + A VIL +L +A + P LY L ++ R+ Sbjct: 21 MRGMVSQLRQFGDQPGLRRAMPAIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKARV 80 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L+ I I + ++VP +AR+ LAAQGLP G + + G + Sbjct: 81 IDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQ-GLPDGNAMLSDLP-MGTS 138 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AIN 181 ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVAPGR 198 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239 EAI +LV+++VP + DVTV+D G+LL+ + + + L ++ Sbjct: 199 ALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQMET 258 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I L+ G N V +++ Q+IRE DPD S + + S Sbjct: 259 LYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPDRTAILSEQS--QVEESAD 316 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLE--------NTDKKEEQSNYEINTKSIATTHDN 351 Q N P E + + N+EI+ K T Sbjct: 317 PQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTRNFEISRKVETTLPAT 376 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQG--KIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++ R+S AVV+ A ++ A+++++ +A G + RGD +TIT Sbjct: 377 ARIARVSAAVVIRAQPQPAPADPEAPSPPLLPEALQADLDRLTRSAIGFDETRGDVVTIT 436 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + FL+ + V + + + L +R + N Sbjct: 437 AQPFLDTIMPEPPG---------WTSQPWVADLARQAFLLAALAVVALGVVRPILNRVLL 487 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 G LSP + V G +D A + Q + + +R ++ L Sbjct: 488 PAPAAAGALPLSPGEAAVEVGEGETLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 543 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 + ++E + R A R+ SE++ Sbjct: 544 VIRKLVEEDSGRIATTFRQMIASELD 569 >gi|54308116|ref|YP_129136.1| flagellar MS-ring protein [Photobacterium profundum SS9] gi|46912542|emb|CAG19334.1| Putative polar flagellar M-ring protein FliF [Photobacterium profundum SS9] Length = 580 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 96/552 (17%), Positives = 208/552 (37%), Gaps = 28/552 (5%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L + +++ I + + Sbjct: 44 LGNLDLLRQVILVLSVSICVALIVMMVMWIKEPEMRPL-GTYDTAELISILDHFDQTKVQ 102 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +G++I VP+ ++ L GL ++S G ++ + FG++ ++ Sbjct: 103 YEL--DGNTIRVPADDFSSIQLGLTRAGL-NNSVAEGDDILLQDMGFGVSQRLEGERLKL 159 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++AR I+ I + A+V + +P F + +A+V + K ++I Sbjct: 160 SRERQLARAIEQIRQVRKAQVLLALPKQSVFVRHNQEASATVFLTLGTNGSLKQQEVDSI 219 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKAL 249 +VA+AVP+L VTV D G+LL++ + + + + + + I+ L Sbjct: 220 VDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDPSATAQRKEYELERKQEQGMREKIDSIL 279 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG N+ S V ++ Q+ +DP + RS ++ + Sbjct: 280 IPILGFGNYTSQVDVTMDFSAQEETRKRFDPSTPSTRSEYTVENYNNG--NIVAGIPGAL 337 Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P S +E N+E++T + R +++V Sbjct: 338 SNQPPADASIPQDIADMQSGRGSSNGASHREATRNFELDTVISHRRAQTGTVSRQTVSVA 397 Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ LT G ++ L +I +++ G + RGD + + +M F Sbjct: 398 VDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQELI 457 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + + + ALV +V ++ L A+++L A G K+ L Sbjct: 458 AELPIWENPNFNTWIRWLAAALVIIVIVVV---LIRPAMKKLLYPHQAADGTPLDKNGLP 514 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + D++ D F S + N + + + ++ + Sbjct: 515 ILSSGDDIDLIGSELDSV-------DGFELSSSNLDLPNLHKDEDLLKAVRALVANEPDL 567 Query: 542 FAKILRKWARSE 553 A++++ W + Sbjct: 568 AAQVVKNWVNED 579 >gi|167614819|ref|ZP_02383454.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4] gi|257141404|ref|ZP_05589666.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 531 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 109/517 (21%), Positives = 200/517 (38%), Gaps = 20/517 (3%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA Sbjct: 27 YMRYDQANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAA 86 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + ++ G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + Sbjct: 87 RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIA 145 Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + + ++ + A+ +LVA +VPNL G V+V+D G Sbjct: 146 KSSSFVMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAF 205 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 L+A L + I + ++ N+ LA LG NFR +V A +N D + Sbjct: 206 LSARVDLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE 265 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + KV +++ N P P + + Sbjct: 266 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASGPDVDGGSRRNATTR 320 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + + +LE+LS+AVV+N + + L I+ I+ + Sbjct: 321 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----TKGKPWQPDQLRRIDDILRSGL 375 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+ +RGD + ++S+DF D L + + AL L G LL+ Sbjct: 376 GIDKQRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPM 432 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L L++ S L P A P+D + + Sbjct: 433 LRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPP 492 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + L + E ER A+++++W R++ Sbjct: 493 AD---SGVEVLIGHLRSLSEKEPERVAEVVKQWIRND 526 >gi|83718135|ref|YP_438373.1| flagellar MS-ring protein [Burkholderia thailandensis E264] gi|83651960|gb|ABC36024.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264] Length = 551 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 109/517 (21%), Positives = 200/517 (38%), Gaps = 20/517 (3%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +Y L+ E ++ + AL I +RI + + V S V +AR+ LAA Sbjct: 47 YMRYDQANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAA 106 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + ++ G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + Sbjct: 107 RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIA 165 Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + + ++ + A+ +LVA +VPNL G V+V+D G Sbjct: 166 KSSSFVMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAF 225 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 L+A L + I + ++ N+ LA LG NFR +V A +N D + Sbjct: 226 LSARVDLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE 285 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + KV +++ N P P + + Sbjct: 286 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASGPDVDGGSRRNATTR 340 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + + +LE+LS+AVV+N + + L I+ I+ + Sbjct: 341 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----TKGKPWQPDQLRRIDDILRSGL 395 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+ +RGD + ++S+DF D L + + AL L G LL+ Sbjct: 396 GIDKQRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPM 452 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L L++ S L P A P+D + + Sbjct: 453 LRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPP 512 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + L + E ER A+++++W R++ Sbjct: 513 AD---SGVEVLIGHLRSLSEKEPERVAEVVKQWIRND 546 >gi|90406819|ref|ZP_01215011.1| flagellar M-ring protein [Psychromonas sp. CNPT3] gi|90312056|gb|EAS40149.1| flagellar M-ring protein [Psychromonas sp. CNPT3] Length = 571 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 90/556 (16%), Positives = 221/556 (39%), Gaps = 26/556 (4%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 +++ R + + +L+ + + + + P Y L + ++ L + Sbjct: 31 LATFFSNVDVLRQISMIIGLLIVLAIVVIIWSWGKQPDYRPL-GNYQTDELISTLDFLDK 89 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 I +++ G+S+ V + K ++ + GL +++SG ++ + FG++ ++ Sbjct: 90 EKITYQL--EGNSVLVEAEQYQKIKLLMTRAGLTQDTNDSGDDILLQDMGFGVSQRVERE 147 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187 + E +I+ I S+ I A+V + +P F + + +A+V+I + Sbjct: 148 RLKLSRERQISVAIMSMKNITKAQVLLAIPKQSVFARKERKASATVVITTSKSYTLSAQE 207 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNI 245 ++I +VA++V L VTV D G+LL + + ++ + ++E + I Sbjct: 208 IDSIVDIVASSVQGLSPNSVTVSDQRGRLLHSGSQDGLSSRSSAEFALERGRENEYKSKI 267 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 + L LG+ N+ S V ++ ++ + +++P K RS L + +S S + Sbjct: 268 DAILIPILGLSNYTSEVDLAMDFTIKEETQKIFNPSKKSVRSEMLVE--TKSTNSILGNI 325 Query: 306 VTVEQNMPHVSDRKVPL-------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 N P + +S+ EE NYE++T + H ++RL+ Sbjct: 326 PGALSNQPPAASSIPEELRKDGDKKKSVIGNSHNEETRNYEMDTTVVHIKHKVGTIDRLA 385 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 ++V ++ T G + D+ + ++ +++ G++ RGD + + S+ F L Sbjct: 386 VSVALDYVPTTNEAGEVTYAPRTDAEVEKLRRLLMGGLGLDIERGDILEMASVRFNRLDL 445 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + I ++ LL L + + + + + E Sbjct: 446 DAVPEEEFWKTEAFQ----GYIRFGGSMLVILLTLLLIVRPIMKKLLYPETLEDEDDYDL 501 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + + + L +++++++ F N + + + ++ Sbjct: 502 GGAIGDLGNDNLQLLTADEDVSME------FDIGGGHIKLPNLHKDEDLLKAVRALVANE 555 Query: 539 EERFAKILRKWARSEI 554 A+++++W S+ Sbjct: 556 PGLSAQVIKEWLTSDE 571 >gi|254228436|ref|ZP_04921862.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262393588|ref|YP_003285442.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|47080313|dbj|BAD18882.1| basal body protein [Vibrio alginolyticus] gi|151939024|gb|EDN57856.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] gi|262337182|gb|ACY50977.1| flagellar M-ring protein FliF [Vibrio sp. Ex25] Length = 580 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 97/558 (17%), Positives = 212/558 (37%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G++ISV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGNTISVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +KE N+E++T + R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R G +S + I +++ G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + S +ALV +V L+ L A+++L N + E+ Sbjct: 454 PEAEQLEEPPIWEHPNFSDWVRWFASALVIIVVVLV---LVRPAMKKLLNPTSDDEDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMNDN 579 >gi|254255067|ref|ZP_04948384.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] gi|124899712|gb|EAY71555.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Burkholderia dolosa AUO158] Length = 537 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 103/534 (19%), Positives = 192/534 (35%), Gaps = 28/534 (5%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 L+ V+ + + + L+ E + L I +RI Sbjct: 27 KLMPLVVLAICVTALAMMVMHHRDTRFKPLFGSQESISAADMMTVLETEGIPYRIHPESG 86 Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 + VP S +G R+ LAA+G+ + +G + DK + G++ F+Q++ R LEGE+ R Sbjct: 87 QVLVPESQLGATRMLLAAKGVV-AKLPAGLDQVDKSDPLGVSQFVQDVRFRRGLEGELVR 145 Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAA 198 +I S+ + +ARVH+ + SF G + +ASV++ AI LVA + Sbjct: 146 SIVSVEPVESARVHLSVAKSSSFILADGDKSSASVVLTLKQGRTLKKDQISAIVALVAGS 205 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 V NLD VTV+D G L+A + I+ E NI + L LG NF Sbjct: 206 VANLDPSRVTVVDQAGNHLSALIDPDSAAATDGEFGARIREETLRNIRELLLPTLGDGNF 265 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 R++V AE++ D + Y + ++ + +R N P Sbjct: 266 RASVTAEIDHDRVEETRERY---GDTPKVMQEATRDERDGAQAAVGVPGSLSNRPIAPPA 322 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 + + + + + + + +L+RL++AVV+N + Sbjct: 323 ASQTADAQ-QSGRNAQTRQFAYDRNVVKIKRSPARLKRLNVAVVINNAAAPGGA-----K 376 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + I+ ++ GI+ R D + ++++DF + + + Sbjct: 377 AWTPEQIERIDAVLRNGLGIDGARDDALVVSALDFRAPPAVETLP-----WWKQPDNIVS 431 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + + V L + L L ++ A + V + + P Sbjct: 432 MATWGGYAVAALSIFLFVLRPLIKILREWVAGREPVPPVATDAQQPADEPAPGSGNGLRA 491 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L L ++ ER A++++ W R Sbjct: 492 AMLPEDATLPPV----------GSDVDVLADHLKNLAHDAPERVAEVIKPWIRK 535 >gi|222824351|ref|YP_002575925.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100] gi|222539572|gb|ACM64673.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100] Length = 561 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 124/574 (21%), Positives = 222/574 (38%), Gaps = 28/574 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPI------MLFMAARFFVNSPHYDNLYVK 54 M L Q + +L + +I+A+ I+V + LF + + Y L+ Sbjct: 1 MDYKTILHQVGQLYQNLSLRQRIIIAASIVVVVGFLVFLTLFRSGSTVASEAGYSVLFEN 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 SD I L ++ + + + + G +I VP+ V K R+ +A+ GL + G+ELF Sbjct: 61 ANTSDSAMIVTQLEKSGVPYILRNEG-TILVPNDQVYKQRLAIASAGLLPKDNKVGFELF 119 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 DK FG T Q++ RALEGE+ARTI+S+ I +A VHI F + PTAS Sbjct: 120 DK-QEFGATEAEQKVKYQRALEGELARTIESLEPIHSATVHIAFAKDTLFTQQQVPPTAS 178 Query: 175 VMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSL 231 V + K I++L+A++V L +V ++D G L E +++ + Sbjct: 179 VALTIKEGLKLNKKQIMGIKNLIASSVTKLTPENVKIMDQKGIPLDDEGAFESDLIAAQI 238 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + ++E+E I ++A F G D + V + + ++ + VYDP++ V L Sbjct: 239 KYKRDQEYELEQKIVASIALFAGGYDRVVAKVSIDYDFSKEESQSEVYDPNTVVRSEQTL 298 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + + + + + N+ V R + K + +N EI+ K TT Sbjct: 299 EEHKEGYKDKEIQGVPGAVSNIGPVEGLDDKGAREV--YTKNQTTTNNEISKKITNTTKQ 356 Query: 351 NYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 ++R+S AVVV+ + + D + I + A G N RGD + Sbjct: 357 FATIKRISAAVVVDGKYKVITDDQGNITNEYMPLSDKEIQAIENLTKGAIGFNLARGDAV 416 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + +++F + SR I + ++ +L+ + Sbjct: 417 EVNNLEFHRTAKVENKV-----QTFYSRFVEPFIPPVKYVFAAILLFIFYKKVIVPFSQK 471 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A I A + N A + + + + Sbjct: 472 MLADIKLEEEMEGKDGQIIDEA--EDAIEKFNAARRKVEEQLGFGDNFDEDALQ---YDV 526 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L + E A +L+K +E E Sbjct: 527 LLEKLRAVANEKGEEVALLLQKLVENEAEFGEKD 560 >gi|121586818|ref|ZP_01676600.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80] gi|153213259|ref|ZP_01948671.1| flagellar M-ring protein FliF [Vibrio cholerae 1587] gi|153825593|ref|ZP_01978260.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2] gi|153828635|ref|ZP_01981302.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39] gi|229528855|ref|ZP_04418245.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)] gi|262191383|ref|ZP_06049573.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93] gi|297582031|ref|ZP_06943950.1| flagellar M-ring protein FliF [Vibrio cholerae RC385] gi|121548985|gb|EAX59024.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80] gi|124116059|gb|EAY34879.1| flagellar M-ring protein FliF [Vibrio cholerae 1587] gi|148875906|gb|EDL74041.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39] gi|149740744|gb|EDM54843.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2] gi|229332629|gb|EEN98115.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)] gi|262032758|gb|EEY51306.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93] gi|297533726|gb|EFH72568.1| flagellar M-ring protein FliF [Vibrio cholerae RC385] gi|327484662|gb|AEA79069.1| Flagellar M-ring protein FliF [Vibrio cholerae LMA3894-4] Length = 580 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 211/563 (37%), Gaps = 30/563 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ + + L R ++L I + + L + F+V P L E ++ Sbjct: 35 DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + +++ +G++I VP S ++ + GL + + +G E+ + FG Sbjct: 94 PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFG 150 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179 ++ +++ + E ++A+ I+ + + ARV + +P F + +ASV + Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRT 210 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 + +A+ +VA+AVP + VTV D G+LL++ + + Q Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270 Query: 240 EIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 E + L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350 + N P + + KE NYE++T Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQ 388 Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + + R ++AV V G ++ L I +++ G + RGD + + Sbjct: 389 SGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVL 448 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 SM F E ++ V + + +ALV ++ L+ L A+++L N Sbjct: 449 SMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILV---LVRPAMKKLINPAAD 505 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ G + G + + + N + + Sbjct: 506 DDDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLK 556 Query: 530 RLLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579 >gi|254291370|ref|ZP_04962163.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226] gi|150422700|gb|EDN14654.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226] Length = 580 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 211/563 (37%), Gaps = 30/563 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ + + L R ++L I + + L + F+V P L E ++ Sbjct: 35 DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + +++ +G++I VP S ++ + GL + + +G E+ + FG Sbjct: 94 PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFG 150 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179 ++ +++ + E ++A+ I+ + + ARV + +P F + +ASV + Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRT 210 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 + +A+ +VA+AVP + VTV D G+LL++ + + Q Sbjct: 211 GANLKQEEVDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270 Query: 240 EIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 E + L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350 + N P + + KE NYE++T Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQ 388 Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + + R ++AV V G ++ L I +++ G + RGD + + Sbjct: 389 SGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVL 448 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 SM F E ++ V + + +ALV ++ L+ L A+++L N Sbjct: 449 SMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILV---LVRPAMKKLINPAAD 505 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ G + G + + + N + + Sbjct: 506 NDDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLK 556 Query: 530 RLLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579 >gi|331645402|ref|ZP_08346506.1| flagellar M-ring protein FliF [Escherichia coli M605] gi|331045564|gb|EGI17690.1| flagellar M-ring protein FliF [Escherichia coli M605] Length = 548 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 108/544 (19%), Positives = 213/544 (39%), Gaps = 39/544 (7%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L+ + V + + + + + Y +LY + E V++I L + +RI Sbjct: 27 LMAGVGLAVAVTAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + R+LEGE+A++ Sbjct: 87 ILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAV 199 I S+ + +ARVH+ + + SF + V + AI HLV+ ++ Sbjct: 146 IMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQVNAIVHLVSGSI 205 Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN----KALAAFLGV 255 P L V+V+D G LLT + + I +I+ I L + +G Sbjct: 206 PGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKIRASVANVLDSLVGT 265 Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315 N+R +V+ +L++ T + Y + R N P + Sbjct: 266 GNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMGVPGSLSNRPPI 322 Query: 316 SDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370 + ++ + E + +Y + H + ++RL++AVV+N+ Sbjct: 323 AANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNVAVVLNQNA--- 379 Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 A + ++ +++ A GI+++RGD ++++ ++F+ + + + D Sbjct: 380 ----PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFVPQAVPVEPVIPLWKDD 435 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + + + + LL+ F + L + A +++ P Sbjct: 436 SVLAW----VRLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAVSEPWIAMPEEE 491 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 N D+ S + S + L + + +R A++LR+W Sbjct: 492 ------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDTDRVAEVLRQWI 539 Query: 551 RSEI 554 S Sbjct: 540 TSNE 543 >gi|15642132|ref|NP_231764.1| flagellar MS-ring protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727194|ref|ZP_01680361.1| flagellar M-ring protein FliF [Vibrio cholerae V52] gi|147674591|ref|YP_001217656.1| flagellar MS-ring protein [Vibrio cholerae O395] gi|153801651|ref|ZP_01956237.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3] gi|153818978|ref|ZP_01971645.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457] gi|153822880|ref|ZP_01975547.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|227082258|ref|YP_002810809.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2] gi|229507782|ref|ZP_04397287.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286] gi|229511981|ref|ZP_04401460.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|229513784|ref|ZP_04403246.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21] gi|229519117|ref|ZP_04408560.1| flagellar M-ring protein FliF [Vibrio cholerae RC9] gi|229522086|ref|ZP_04411503.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80] gi|229607327|ref|YP_002877975.1| flagellar MS-ring protein [Vibrio cholerae MJ-1236] gi|254226365|ref|ZP_04919954.1| flagellar M-ring protein FliF [Vibrio cholerae V51] gi|254849219|ref|ZP_05238569.1| flagellar MS-ring protein [Vibrio cholerae MO10] gi|262153482|ref|ZP_06028612.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1] gi|262167493|ref|ZP_06035199.1| flagellar M-ring protein FliF [Vibrio cholerae RC27] gi|298497845|ref|ZP_07007652.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757] gi|9656684|gb|AAF95278.1| flagellar M-ring protein FliF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630439|gb|EAX62832.1| flagellar M-ring protein FliF [Vibrio cholerae V52] gi|124122828|gb|EAY41571.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3] gi|125621115|gb|EAZ49460.1| flagellar M-ring protein FliF [Vibrio cholerae V51] gi|126510473|gb|EAZ73067.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457] gi|126519576|gb|EAZ76799.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|146316474|gb|ABQ21013.1| flagellar M-ring protein FliF [Vibrio cholerae O395] gi|227010146|gb|ACP06358.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2] gi|227014029|gb|ACP10239.1| flagellar M-ring protein FliF [Vibrio cholerae O395] gi|229341011|gb|EEO06016.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80] gi|229343806|gb|EEO08781.1| flagellar M-ring protein FliF [Vibrio cholerae RC9] gi|229348965|gb|EEO13922.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21] gi|229351946|gb|EEO16887.1| flagellar M-ring protein FliF [Vibrio cholerae B33] gi|229355287|gb|EEO20208.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286] gi|229369982|gb|ACQ60405.1| flagellar M-ring protein FliF [Vibrio cholerae MJ-1236] gi|254844924|gb|EET23338.1| flagellar MS-ring protein [Vibrio cholerae MO10] gi|262024065|gb|EEY42760.1| flagellar M-ring protein FliF [Vibrio cholerae RC27] gi|262030719|gb|EEY49353.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1] gi|297542178|gb|EFH78228.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757] Length = 580 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 211/563 (37%), Gaps = 30/563 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ + + L R ++L I + + L + F+V P L E ++ Sbjct: 35 DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + +++ +G++I VP S ++ + GL + + +G E+ + FG Sbjct: 94 PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFG 150 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179 ++ +++ + E ++A+ I+ + + ARV + +P F + +ASV + Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRT 210 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 + +A+ +VA+AVP + VTV D G+LL++ + + Q Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270 Query: 240 EIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 E + L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350 + N P + + KE NYE++T Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQ 388 Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + + R ++AV V G ++ L I +++ G + RGD + + Sbjct: 389 SGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVL 448 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 SM F E ++ V + + +ALV ++ L+ L A+++L N Sbjct: 449 SMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILV---LVRPAMKKLINPAAD 505 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ G + G + + + N + + Sbjct: 506 NDDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLK 556 Query: 530 RLLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579 >gi|149908457|ref|ZP_01897120.1| flagellar biosynthesis; basal-body MS(membrane andsupramembrane)-ring and collar protein [Moritella sp. PE36] gi|149808620|gb|EDM68555.1| flagellar biosynthesis; basal-body MS(membrane andsupramembrane)-ring and collar protein [Moritella sp. PE36] Length = 569 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 94/559 (16%), Positives = 215/559 (38%), Gaps = 27/559 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 +Q F T+ R +IL + + + L + + P L +++ Sbjct: 27 EQKSSAFGFFTNADILRQIILILALAISLTLVVFILLWGKEPEMRPL-GTYPTAELIETL 85 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + ID+ I NG ++SV + ++ L GL ++ G ++ + FG++ Sbjct: 86 DFLDQEKIDYTI--NGDTVSVSAEQYQNIKLRLRRSGLTTTELQ-GDDILMQDMGFGVSQ 142 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NP 182 ++ E +IAR ++ + A+V + +P F K +P+A+V++ Sbjct: 143 RVERERLKLGRERQIARALEEFKQVSKAQVLLAIPKENVFAKRNKKPSATVVLTVRNSAA 202 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 ++ +++ LVA+AV L+ VT+ D G+LL + + + +V+ + E Sbjct: 203 LSQENIDSMVQLVASAVQGLEPTRVTLTDQNGRLLNSGSQDMLAAKGRREFEMVKNHERE 262 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LGV N+ + V ++ + + ++PD RS L + ++S + Sbjct: 263 YRTKIDSILMPILGVSNYTAEVDVSMDFSVTEQTQKRFNPDLPAVRSEMLLE--RQSFGN 320 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLE------NTDKKEEQSNYEINTKSIATTHDNYKL 354 + N P + + +KE NYE++T T + Sbjct: 321 GNQGIPGALTNQPPLDADIPEEADAGNAAAGPIGQSQKESTRNYELDTTISHTKSQTGVI 380 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS++V ++ G + + + +A I +++ G N RGD + + ++ F Sbjct: 381 QRLSVSVAIDYINSVGADGALVREPRSQAEIANIRRVLQGGIGFNVNRGDNLEVVAIPFN 440 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 +L + + + F I L+ +++ + + + ++ ++ Sbjct: 441 RPELTAMTDLPIWEEE----WFWRAIRIAASLLVIVVLIIAIIRPMIKRLINNEPEENLE 496 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +S + + D+ F+ N + + + + Sbjct: 497 DLDLGISAIENDEDMQL-------LTADTEGDTDFAMRSGHLQLPNLHKDEDLLEAVRAL 549 Query: 535 IEINEERFAKILRKWARSE 553 + + A ++++W + Sbjct: 550 VANEPDLTALVIKEWMIED 568 >gi|269965705|ref|ZP_06179818.1| flagellar M-ring protein [Vibrio alginolyticus 40B] gi|269829773|gb|EEZ84009.1| flagellar M-ring protein [Vibrio alginolyticus 40B] Length = 580 Score = 299 bits (765), Expect = 8e-79, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 212/558 (37%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G+++SV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +KE N+E++T + R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R G +S + I +++ G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + S +ALV +V L+ L A+++L N + E+ Sbjct: 454 PEDEQLEEPPIWEHPNFSDWVRWFASALVIIVVVLV---LVRPAMKKLLNPTSDDEDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMNDN 579 >gi|332140582|ref|YP_004426320.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550604|gb|AEA97322.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 564 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 97/561 (17%), Positives = 215/561 (38%), Gaps = 30/561 (5%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + F + S R + L V+++ + + + + P Y L K+E ++ Sbjct: 23 ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 + I++++ G+++ V S R+ + QGL ++SS++G ++ + FG++ Sbjct: 82 DYMDANQIEYKL--EGNTVYVRSDEFQNIRLGMTRQGL-TNSSDAGTDIIMQDMGFGVSQ 138 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ A E +IA TI+ I+ I ARV + P F + + +A+V++ A Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLATPKENVFARREKKASATVVLTAKRGAV 198 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHE 240 + A+A+ +VA+AV N++ VTV DS G+LL + + + + E Sbjct: 199 IAGEEADAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I+ L LG+ N+ + ++ + + Y+PD RS + ++ S Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVAMDFTAIEQTQRSYNPDLPAVRSEMIVEE--NSVGG 316 Query: 301 QPESAVTVEQNMPHVSDRKVPLP-----RSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + +++ KE NYE++T T + Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS++V V+ ++ G + + I +++ G + RGD++ + S+ F Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGE 473 + F ++ ++ + +++ + + R D + E Sbjct: 437 MDTGEIEDAPLWEQPG----FLPILKLVIGGLVIIVLIIFVIRPMLRRLINPDETNEADE 492 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 L + ++ T + + + + + + Sbjct: 493 FDADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLP---------DLHKDEDVLKAVRA 543 Query: 534 MIEINEERFAKILRKWARSEI 554 ++ E A++++ W + Sbjct: 544 LVANEPELSAQVVKGWLMQDE 564 >gi|323705446|ref|ZP_08117021.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum LX-11] gi|323535348|gb|EGB25124.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum LX-11] Length = 502 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 99/561 (17%), Positives = 204/561 (36%), Gaps = 74/561 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +Q+ F+ + + + + + L+ I + +N P+Y+ LY L D Sbjct: 7 NIREQIDNFWNKF---DKKQKIQIGIIALLLIGSIALLLYILNRPNYEVLYSGLSTKDAG 63 Query: 62 RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L E I ++I +GS+I VP+ +AR+ LA +G+P + + NS Sbjct: 64 TVVDKLKNELKIPYKIEGDGSTILVPAQYKDEARMQLATEGIPQDGFSFSDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + ++ EI T+++I G+ A+V+IV+PD +F + + Sbjct: 121 ATTDQERREKYIYFVQNEIQNTLKTIDGVQDAKVNIVVPDQSNFVLSNSDNSSTAAVMLQ 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235 ++ + I + V+ +V L VT++D GK+L A + ++ Sbjct: 181 LKPGVTLTNQQINGITNFVSKSVQGLSPDKVTIIDGNGKVLVAQNDSSLDGASSQYALQM 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q++++ NI L G N LN D Q ++ + P ++ + RS + K Sbjct: 241 KVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTIK 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++ N P S + K + NYEIN T Sbjct: 301 EIANGSSNGA--PAGTATNNPPGSTTYTTQNNGNSSYSKTDTTINYEINQIKTTLTSAQG 358 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K++ +S++VVVN + ++ +VS A G + ++++ + Sbjct: 359 KIQNISLSVVVNNSN------------LTPAMKQQLTDLVSNAAGGKNV---SVSVMGIK 403 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + L + + ++G L++ +A+++ + Sbjct: 404 FNNDLLNQMKNNGKQSFPYVW----------LIILGALVLAGGVFYAMKKRSKLAVPSAK 453 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 S++ P + ++ Sbjct: 454 SEEAISMVEPLEDIEVHDE--------------------------------RDEKKKQIE 481 Query: 533 HMIEINEERFAKILRKWARSE 553 I+ + A+++R W E Sbjct: 482 KFIKQKPDIVAQLIRTWLNEE 502 >gi|307721566|ref|YP_003892706.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294] gi|306979659|gb|ADN09694.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294] Length = 569 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 124/571 (21%), Positives = 217/571 (38%), Gaps = 25/571 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56 M Q L + + +I+A+ ++ + + F Y+ L+ L Sbjct: 1 MDFKVLFSQLSVLYAKLTKQQKIIIAAAVVGIVAFLIFLVVFTAKKTSGSAYEVLFDALT 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D ++ L + NI ++I N + I VP +V K RI +A+ G+P +S G+ELFDK Sbjct: 61 PADAAKVVEQLEKDNITYKIEAN-NVIKVPRDVVYKERISIASLGIPKNSG-VGFELFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TSF Q+I +RALEGE++RTI ++S + A V + +P F PTASVM Sbjct: 119 -QEFGATSFDQKIKHLRALEGELSRTITALSPVEKATVSLALPKDTLFVSKQVDPTASVM 177 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSL 231 ++ K I++LV+AAVP L +V ++DS G L N+ + Sbjct: 178 VQLADGRMLTPKQIRGIKNLVSAAVPKLKSSNVMLIDSDGVTLGDNDEMAQMSELSVVQQ 237 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + + I +A F+ G D + V E + + YDP++ V Sbjct: 238 KYKIKEEKKRQEKIIDVIAPFVGGKDKVVAQVTIEFDFSQKNSTSEKYDPENVVRSEQVN 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + + S + N+ V +++E K +NYE+ T Sbjct: 298 EEKREGSSPKEVGGVPGTVSNIGPVQGL--ASNKTVEKYSKNSGTTNYEVGKTVSTTKSQ 355 Query: 351 NYKLERLSIAVVVNKGRLT------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 +++R++ AVVV+ T D+ + + + S + GI+ RGD Sbjct: 356 FARIKRITAAVVVDGKYKTKVDKDGNPTEEMEYVPLDDADINALTSLASRSIGIDPNRGD 415 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I++ ++ F ++ T + L L V L +++ Sbjct: 416 QISVQNLQFERALTNKGVQ----GVNQAIIFSETYLAPFSGLFKYLFVLILLFILYKKVI 471 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 K E+ + P + + + Sbjct: 472 APFADKMLEISKEDEELVAPSLEIEEEEGEDLVEKVQTMRKKVEDQLGMSSNFNEDDLKH 531 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ M E E A +L E E Sbjct: 532 EVILEKVRTMAEDTPEEVASLLEALLSEESE 562 >gi|91223544|ref|ZP_01258809.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] gi|91191630|gb|EAS77894.1| flagellar M-ring protein [Vibrio alginolyticus 12G01] Length = 580 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 212/558 (37%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G+++SV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +KE N+E++T + R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R G +S + I +++ G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + S +ALV +V L+ L A+++L N + E+ Sbjct: 454 PEAEQLEEPPIWEHPNFSDWVRWFASALVIIVVVLV---LVRPAMKKLLNPTSDDEDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMNDN 579 >gi|148976413|ref|ZP_01813119.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] gi|145964236|gb|EDK29492.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3] Length = 580 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 95/557 (17%), Positives = 208/557 (37%), Gaps = 30/557 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 41 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++ + G++ISVP+S ++++ GL + N+G ++ + FG++ ++ Sbjct: 100 DQQKIEYSL--EGNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + A+V + +P F + +ASV + + K Sbjct: 157 QERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243 +++ +VA+AVP + +TV D G+LL++ + + + + + Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALRE 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +L+ + +DP++ RS +D T Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTV--A 334 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + KE N+E++T + R Sbjct: 335 GIPGALSNQPPSDASIPQDVAQMKDGAMTGQGSVHKEATRNFELDTTISHERKQTGTVNR 394 Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + ++ + G S + I +++ G + RGD + + SM F Sbjct: 395 QTVSVAIKDRQSINPDTGEVVHTPIPASEINAIRQVLIGTVGFDESRGDLLNVLSMQFAP 454 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 V + + +ALV +V L+ L A+++L N ++ Sbjct: 455 QITDVVPDVPIWEHPNFNDWVRWFASALVIIVVVLV---LVRPAIKKLLNPAADNDEQMY 511 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G + G + N + + + ++ Sbjct: 512 GPDGMPIGADGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562 Query: 536 EINEERFAKILRKWARS 552 E A++++ W Sbjct: 563 ANEPELAAQVVKNWMAD 579 >gi|331671787|ref|ZP_08372583.1| flagellar M-ring protein FliF [Escherichia coli TA280] gi|331070776|gb|EGI42135.1| flagellar M-ring protein FliF [Escherichia coli TA280] Length = 552 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 113/555 (20%), Positives = 217/555 (39%), Gaps = 36/555 (6%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ + + A++ +++ A GI+ +RGD +T++ ++F+ + Sbjct: 372 AVVLNQNAPAMKNWK---PEQTAQLTAQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 428 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 429 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 484 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 485 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 532 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 533 DRVAEVLRQWITSNE 547 >gi|293408353|ref|ZP_06652192.1| flagellar M-ring protein FliF [Escherichia coli B354] gi|291471531|gb|EFF14014.1| flagellar M-ring protein FliF [Escherichia coli B354] Length = 548 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 113/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+ +RGD +T++ ++F+ Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFVPQVAP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPVIPLWKDDCVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|146309431|ref|YP_001189896.1| flagellar MS-ring protein [Pseudomonas mendocina ymp] gi|145577632|gb|ABP87164.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp] Length = 559 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 104/537 (19%), Positives = 201/537 (37%), Gaps = 26/537 (4%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94 + + + + + LY E + L I +R+ + V +G+AR Sbjct: 34 VGVVFYLWRDQGSFRPLYGTGEAYPAAEVMQVLDGDAISYRLHPQSGQVLVREDQLGRAR 93 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 + LAA+G+ +GYELFDK G + F+Q++ R+LEGE+ART+ ++ G+ ARV Sbjct: 94 MLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRLKRSLEGELARTVMALKGVEGARV 152 Query: 155 HIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211 H+ + + SF ++ + + + + + AI +LVA +VP LD +V V+D Sbjct: 153 HLALQESSSFVVGKREPGKASVMLQLAPGYKLAPEQVSAIVNLVAGSVPQLDAANVQVVD 212 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 G LL+ ++ +V Q++ N LA LG N+R +V A+++ + Sbjct: 213 QYGALLSRGIDTLGGPVQNWQVVDDYQNKAVANAEAVLAPVLGNGNYRISVAADIDFSQK 272 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---------PL 322 + Y + R + N P + Sbjct: 273 EETFQAY---GETPRLRNEVLRDESVLDQLALGVPGSLANRPPQPAPEPVEGQPPAEGEA 329 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + +KE + + H + L + SIAVV+N E G Sbjct: 330 ANKAATSLRKESNRQLDYDQSVTHVKHAPFSLRQQSIAVVLNAAAAPE-------GGWTA 382 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 AE+ +V +A G N RGD +T++ F + + + + + + Sbjct: 383 EARAELEAMVKSAVGFNQARGDLLTLSVFPFTAAGADAAQGEALPWWENVK--VHELARL 440 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN-DNIAL 501 VF + +LL+ + + R + + L+ + Sbjct: 441 GVFALISLLLLLMVVRPAVRSLTQRSQPGVAAAVQGDEQLALHAERTAERLLARVGDEPP 500 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558 ++ S ++ + L + + + ER ++++++W D Sbjct: 501 GATVLGELSPLSEIRLPAPGSGLELQIEHLQMLAKNDPERVSEVIKQWIGRNERDLN 557 >gi|300936110|ref|ZP_07151050.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] gi|300458730|gb|EFK22223.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1] Length = 551 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 113/558 (20%), Positives = 218/558 (39%), Gaps = 43/558 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDK--------KEEQSNYEINTKSIATTHDNYKLER 356 N P V+ +V + ++ E + +Y + H + ++R Sbjct: 312 VPGSLSNRPPVAPNQVTNGAMPADENRSPEALSKHSESKRDYSYDRSVQHIQHPGFTVKR 371 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 L++AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 LNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQ 424 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + + + D + + + + LL+ F + + + A Sbjct: 425 AVPVEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEP 480 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 +++ P N D+ S + S + L + Sbjct: 481 EAVSEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAM 528 Query: 537 INEERFAKILRKWARSEI 554 + +R A++LR+W S Sbjct: 529 SDTDRVAEVLRQWITSNE 546 >gi|327254536|gb|EGE66152.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v] Length = 548 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 115/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + FMQ + Sbjct: 76 LTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFMQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + L + A ++I Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAI 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAVPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|90411023|ref|ZP_01219037.1| flagellar M-ring protein [Photobacterium profundum 3TCK] gi|90328236|gb|EAS44547.1| flagellar M-ring protein [Photobacterium profundum 3TCK] Length = 580 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 97/552 (17%), Positives = 209/552 (37%), Gaps = 28/552 (5%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L R +IL + + + L + ++ P L + +++ I + + Sbjct: 44 LGNLDLLRQVILVLSVSICVALIVMMVMWIKEPEMRPL-GTYDTAELITILDHFDQTKVK 102 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +G++I VP+ ++ L GL +++ G E+ + FG++ ++ Sbjct: 103 YEL--DGNTIRVPADNFSSIQLGLTRAGL-NNAVAEGDEILLQDMGFGVSQRLEGERLKL 159 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 + E ++AR I+ I + A+V + MP F + +A+V + K ++I Sbjct: 160 SRERQLARAIEQIRQVRKAQVLLAMPKQSVFVRHNQEASATVFLTLGTNGSLKQPEVDSI 219 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKAL 249 +VA+AVP+L VTV D G+LL++ + + + + + + I+ L Sbjct: 220 VDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDASATAQRKEYELERKQEQAMREKIDSIL 279 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 LG N+ S V ++ Q+ +DP + RS ++ + Sbjct: 280 IPILGFGNYTSQVDVAMDFSAQEETRKRFDPSTPSTRSEYTVENYNNG--NIVAGIPGAL 337 Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N P S + +E N+E++T + R +++V Sbjct: 338 SNQPPADASIPQDIADMQSGRGSSDGASHREATRNFELDTVISHLRAQTGTVSRQTVSVA 397 Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 V+ LT G ++ L +I +++ G + RGD + + +M F Sbjct: 398 VDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQELI 457 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 + + + + ALV +V ++ L A+++L A G K+ L Sbjct: 458 AELPIWENPNFNTWVRWLAAALVIIVIVIV---LIRPAMKKLLYPHQAADGTPLDKNGLP 514 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + D++ D F S + N + + + ++ + Sbjct: 515 ILSSGDDIDLIGSELDSV-------DGFELSSSNLDLPNLHKDEDLLKAVRALVANEPDL 567 Query: 542 FAKILRKWARSE 553 A++++ W + Sbjct: 568 AAQVVKNWVNED 579 >gi|91792682|ref|YP_562333.1| flagellar MS-ring protein [Shewanella denitrificans OS217] gi|91714684|gb|ABE54610.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217] Length = 566 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 94/561 (16%), Positives = 205/561 (36%), Gaps = 25/561 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + R + + + V + L + + P Y L K++ +++ ++ Sbjct: 20 ENKSGLMSNIGGTDFLRQITMILALAVCLALAVFVMMWAQEPEYRPL-GKMDTAEMIQVL 78 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I + I + I VP ++ L+ G+ S+ + Y K + FG++ Sbjct: 79 DVLDKNQIKYEIQLD--VIKVPEDQYQDIKLILSRAGIESNVDTNDY--LSKDSGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPS 183 M++ + E +AR I+ + + A+V + +P F + ++P+A+V++ Sbjct: 135 RMEQARLKHSQELNLARVIEELKSVSRAKVILALPKENVFARNQSQPSATVVVNVRRGSL 194 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241 + +AI +VA+AV L+ VTV DS G+LL + + + L +VQ + E Sbjct: 195 GQEEIDAIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDGASARARRELELVQNQEAEY 254 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG +NF S V ++ + + PD RS + E Sbjct: 255 RKKIESILMPILGPENFTSEVDVTMDFTAIEQTAKRFAPDLPALRSEMTIETNTNGERV- 313 Query: 302 PESAVTVEQNMPHVSDRKVPLPR------SLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + + +E N+E++T T + Sbjct: 314 -GGIPGALSNQPPMESDIPENAGEATESVASNGNVHREATRNFELDTTISHTRQQIGVVR 372 Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 R+S++V ++ G+ + + LA I +++ A G +++RGD + + ++ F+ Sbjct: 373 RVSVSVAIDFKAGAAGEDGQVTRVARTEQELANIRRLLEGAVGFSAQRGDMLEVVTVPFM 432 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + L + F I + + L++ + + R V Sbjct: 433 DQLLEELPAPDLWEQP----WFWRAIKLGIGAIVILVLILAVVRPMLRRLI----DPEGV 484 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + + L++ + N + + + Sbjct: 485 NMPDDTRLGHELAEIEDQYAADTLGMLNTKEAEYSYADDGSIHIPNLHKDDDMIKAIRAL 544 Query: 535 IEINEERFAKILRKWARSEIE 555 + E ++++ W + + Sbjct: 545 VANEPELSTQVVKNWLLEDAQ 565 >gi|153947902|ref|YP_001399623.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758] gi|152959397|gb|ABS46858.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP 31758] Length = 546 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 121/559 (21%), Positives = 228/559 (40%), Gaps = 27/559 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q LG IL S + + + + +S Y L+ E V + Sbjct: 1 MLDKIKQKLSP-GQLGENTKTILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPVTQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF + + + +R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNRSDNSASVVLRLRY 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD ++ + + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAERYGPDPRIND---ENIQQE 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P + P ++ + + Q Y + + YKLE Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINVMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ L+ F ++R Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVL---WFGVRPLMKRYSRKGSENLPLAI 462 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + + A + + S +L + + +K L + Sbjct: 463 SSASADEALDHVDTGVDGVESSPRAETAFSASSLWESDDLPEQGSGLETK--IAHLQQLA 520 Query: 536 EINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 521 QSETERTAEVIKQWINSNE 539 >gi|170682472|ref|YP_001742357.1| flagellar MS-ring protein [Escherichia coli SMS-3-5] gi|170520190|gb|ACB18368.1| lateral flagellar M-ring protein LfiF [Escherichia coli SMS-3-5] Length = 548 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+ +RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|262404479|ref|ZP_06081034.1| flagellar M-ring protein FliF [Vibrio sp. RC586] gi|262349511|gb|EEY98649.1| flagellar M-ring protein FliF [Vibrio sp. RC586] Length = 580 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 101/563 (17%), Positives = 214/563 (38%), Gaps = 30/563 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ + + L R ++L I + + L + F+V P L E ++ Sbjct: 35 DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + +++ +G++I VP S ++ + GL + +G E+ + FG Sbjct: 94 PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFG 150 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRA 179 ++ +++ + E ++A+ I+ + I ARV + +P F + +ASV +R Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRT 210 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAI 237 + +A+ +VA+AVP + VTV D G+LL++ + K + + Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 271 EDVLRDKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350 + N P + + KE N+E++T Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNFELDTTISHERKQ 388 Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + + R ++AV V G ++ L I +I+ G + RGD + + Sbjct: 389 SGVVNRQTVAVAVKSRSNVNPDTGEITYTPLSEADLNSIRQILIGTVGYSENRGDLLNVL 448 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 SM F E + + + + + +ALV ++ L+ L A+++L N Sbjct: 449 SMQFAEPEAEQIADIPIWENPNFNDWIRWLASALVIIIVVLV---LVRPAMKKLINPAAD 505 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ G + G + + + N + + Sbjct: 506 SDDQMYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLP---------NLHKDEDVLK 556 Query: 530 RLLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579 >gi|323975944|gb|EGB71038.1| flagellar M-ring protein FliF [Escherichia coli TW10509] Length = 548 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEMLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G+ N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGMGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + LL+ F + L + A ++I Sbjct: 425 VEPVIPLWKDDSVLAWG----RLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAI 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAVPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|28899023|ref|NP_798628.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836977|ref|ZP_01989644.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|260365231|ref|ZP_05777788.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|260878781|ref|ZP_05891136.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|260897376|ref|ZP_05905872.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|260899935|ref|ZP_05908330.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|4322017|gb|AAD15920.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus] gi|28807242|dbj|BAC60512.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus RIMD 2210633] gi|149749750|gb|EDM60495.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810] gi|308088295|gb|EFO37990.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466] gi|308094213|gb|EFO43908.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034] gi|308107383|gb|EFO44923.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037] gi|308115404|gb|EFO52944.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030] gi|328474440|gb|EGF45245.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329] Length = 580 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 93/558 (16%), Positives = 210/558 (37%), Gaps = 30/558 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L + ++ + L Sbjct: 40 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYDTEELIPVLDYL 98 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I++++ +G+++SV SS ++ + G+ + ++ +G ++ + FG++ ++ Sbjct: 99 DQQKINYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + ARV + +P F + +ASV + + K Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243 ++I +VA+AVP + +TV D G+LL++ + K + ++ + + Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +++ + +DP++ RS +D + Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSAVEQTRKRFDPNTPSTRSEYALEDYNNG--NMVA 333 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + +KE N+E++T + R Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393 Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + R G + + I +++ G + RGD + + S+ F E Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSEGEINAIRQVLIGTVGFDQSRGDLLNVLSVKFAE 453 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + + +ALV +V L+ L A+++L N E+ Sbjct: 454 PETEQLVDQPIWEHPNFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAGDDDDEMY 510 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G L G + N + + + ++ Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561 Query: 536 EINEERFAKILRKWARSE 553 E A++++ W Sbjct: 562 ANEPELAAQVVKNWMNEN 579 >gi|260853453|ref|YP_003227344.1| putative lateral flagellar basal-body M-ring and collar protein [Escherichia coli O26:H11 str. 11368] gi|257752102|dbj|BAI23604.1| predicted lateral flagellar basal-body M-ring and collar protein [Escherichia coli O26:H11 str. 11368] gi|323158008|gb|EFZ44109.1| flagellar M-ring protein FliF [Escherichia coli EPECa14] Length = 548 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244 AI HLV+ ++P L V+V+D G LLT + + I +I+ Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPESEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|300854208|ref|YP_003779192.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528] gi|300434323|gb|ADK14090.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528] Length = 532 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 108/563 (19%), Positives = 209/563 (37%), Gaps = 46/563 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I L R + + + + + + + + Y L+ L+ +D Sbjct: 4 ISQIFKNLIGKWKDLSRNKKIAFSVIAVGIVAALIFGGLTLGKTKYAVLFSNLDATDSAT 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L +D ++ GSSI VP V K R+ ++ + ++ + G+EL DK N FG Sbjct: 64 IYKQLQSDKVDAKVQ--GSSILVPKDQVDKIRMQTLSE-VQLTNGSQGFELLDKSN-FGQ 119 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180 T I RAL+GEI RTI+S+ I ARVH+V+PD F K +ASV ++ Sbjct: 120 TDQQMNINYQRALQGEIERTIKSLPQIENARVHLVLPDNTEFVKDTQPGSASVTIKLKPG 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSL 231 +A+ LV+ +V N+ +V V+D LL+ + K Sbjct: 180 QTLSQDQTKALVALVSGSVKNIPKENVEVIDDKLNLLSRDLYQNKSGDSSSSTIPADKQQ 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + Q + ++E + L G + + + A+L+ D Q YDP + + Sbjct: 240 ELQQKYEDDMEKRLLAMLEPIYGKNKVKVQINADLDFDAVQQDSTTYDPKN------VVV 293 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + T+ + + + + N+ + E NY+++ T Sbjct: 294 SEHTVNNTNTGATNNASTSPVDNNMSNTSVNNANGGNSTQNEVTRNYDVSKVEQKTIKAP 353 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++RL+ +V ++ D+ I + +A G N RGDTI + ++ Sbjct: 354 GSVKRLTASVALDGTV-------------DDATKTSIRNLAVSAIGYNQTRGDTINVEAI 400 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F ++ + ++ I + G LL+ + L R + +D ++ Sbjct: 401 PFDTTAQDSAKKDLDAMQKAEAQANRNKIIIGASIAGALLIAAIVGFILWRRKHAEDEEE 460 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + D+ N+ F +++V + + Sbjct: 461 LFDEELGNTQGIDA--------VIGDDDLTKEQNKLKFKPVEFEHETEDTHVENE----I 508 Query: 532 LHMIEINEERFAKILRKWARSEI 554 + ++ A I++ W + Sbjct: 509 KKYAKDKPDQVADIIKAWIAEDE 531 >gi|225181611|ref|ZP_03735052.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1] gi|225167719|gb|EEG76529.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1] Length = 519 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 112/557 (20%), Positives = 206/557 (36%), Gaps = 57/557 (10%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ + L + + + + + I+ + P L+ LE D RI+ Sbjct: 11 RVQDLPEKWQQLSQRKKIAAIVMAVAIIVTLFFLGQAIARPRMALLFTGLEPVDAGRIAA 70 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L E N+ + + D G +I V MV RI LA+ + SG+ELFD+ N G T F Sbjct: 71 RLQEMNVQYSLDDEGRTILVRQDMVDDVRIQLASDESLNIGGGSGFELFDQTN-LGATDF 129 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PS 183 + + +RAL+ E+ RTI + + ARVH+ +P+ F + A P+AS+++ Sbjct: 130 NRRMDYLRALQEELRRTIVRLDEVEQARVHLALPEPSVFIQDSAEPSASIVLALSPVSRL 189 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLSIVQA 236 + I HLVA +V N+ +VTV+D+TG +L+ L I ++ Sbjct: 190 DSERVRGIVHLVAGSVENMRPENVTVIDTTGNILSDQLDNLDPTKQLAEATMAQLDIKRS 249 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 + E+E + L LG + + A+L+ D+ + I +D + + + Sbjct: 250 FEKELERRVQVMLERILGPGQAIAMITADLDFDSHESTVITFDSEG--VPRSQTITEEYF 307 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + N+P + ++ +E +NYEIN + KL + Sbjct: 308 EGAGVVPGEAGADSNIPGYPWVGGTGDST---YERYDETTNYEINETTERQIRAPGKLVQ 364 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 L+ +VVVN + + +I++ V AA G RGD+I++ M F + Sbjct: 365 LNASVVVNDN----------GGQLSQAQVRQISEAVEAALGYQVGRGDSISVQGMSFDTS 414 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 ++ + + +++ F+ L A R + Sbjct: 415 HQEDAMLAMEEAARREM--IERYVTIGAIALAAIIIFFVILRAFRAWRERQLEAELAAL- 471 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + ++ R+ + E Sbjct: 472 -----------------------------ASAPKIQEEPAEEMEETPQQRLHKRVRDLAE 502 Query: 537 INEERFAKILRKWARSE 553 E A ++R W E Sbjct: 503 REPESVAHLIRAWLAEE 519 >gi|149188085|ref|ZP_01866380.1| flagellar M-ring protein [Vibrio shilonii AK1] gi|148838073|gb|EDL55015.1| flagellar M-ring protein [Vibrio shilonii AK1] Length = 582 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 102/551 (18%), Positives = 206/551 (37%), Gaps = 29/551 (5%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 L R ++L I + + L + F+V P L E ++ + L + + + Sbjct: 49 GDLDLLRQIVLVLSISICVALIVMLFFWVKEPEMRPL-GVYETEELIPVLDYLDQKKVQY 107 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 ++ G+++SVP+S ++ + G+ +S N+G ++ + FG++ +++ + Sbjct: 108 KL--EGNALSVPASEYNNLKLDMVRAGINRAS-NTGDDILMQDMGFGVSQRLEQERLKLS 164 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR 192 E ++ + I+ + + ARV + +P F + +ASV + + +++ Sbjct: 165 RERQLGKAIEQMKQVRTARVLLALPKQSVFVRHNQEASASVFLTLATGAVLRQQEVDSVV 224 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALA 250 +VA+AVP + +TV D G+LL+ + + K + Q + + I+ L Sbjct: 225 DMVASAVPGMKPSRITVTDQHGRLLSSGSQDAASMARRKEQELEQNQEQALREKIDSVLI 284 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 LG+ N+ + V EL+ + +DP++ RS +D + Sbjct: 285 PILGLGNYTAQVDIELDFSAVEQTRKRFDPNTPATRSEYTLEDYNNG--NVVAGVPGALS 342 Query: 311 NMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 N P + + KE N+E++T + + R ++AV + Sbjct: 343 NQPPADASIPTDVAQMKDGSIMGQGSVHKEATRNFELDTTISHERKQSGVVNRQTVAVAI 402 Query: 364 NKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 G Q + +S LA I +++ A G N RGD + + SM F E Sbjct: 403 KNRSSVNPDTGEVTYQPRSESELAAIRQVLIGAVGFNENRGDLLNVLSMTFEEPTTDLLP 462 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 V + + +ALV + + + L R L Sbjct: 463 DVPIWEHPNFNDWIRWFASALVII--------VVVFVLIRPAMKKLLNPAAQEEDDQLYG 514 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 P G +D S FS +L N + + + ++ E Sbjct: 515 PDGLPLGADGETSLIGTDIDGSELFEFSTGIDLP---NLHKDEDVLKAVRALVANEPELA 571 Query: 543 AKILRKWARSE 553 A++++ W Sbjct: 572 AQVVKNWMAEN 582 >gi|59889767|emb|CAH19122.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli] gi|284920031|emb|CBG33087.1| lateral flagellar M-ring protein (FliF-like) [Escherichia coli 042] Length = 548 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDSVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+ +RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PAMKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|170737019|ref|YP_001778279.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] gi|169819207|gb|ACA93789.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3] Length = 548 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 109/546 (19%), Positives = 206/546 (37%), Gaps = 28/546 (5%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 S L ++ + + Y L+ E + AL I Sbjct: 24 RLPSPAALSKLAPIVILAISLAALTMMLMHRQDSRYKPLFGSQEAVVAADMMAALDAEGI 83 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 +RI + + VP +G AR+ LAA+G+ G E DK + G++ F+Q++ Sbjct: 84 PYRIHPDSGQVLVPEQKLGAARMMLAAKGVV-GKLPEGLEQVDKSDPLGVSQFVQDVRFR 142 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAE 189 R LEGE+ ++I ++ + +ARVH+ + SF + + + ++ + Sbjct: 143 RGLEGELTQSIMALEPVSSARVHLSIAKSASFILADGDKSSASVVLTLKPNRKLNKEQIA 202 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEIEMNINKA 248 AI LVA +V NLD VTV+D +G L+A + ++ ++ NI + Sbjct: 203 AIVALVAGSVANLDPARVTVIDQSGNHLSAQIDLVLGNSTLDSELGAQMREQVLRNIREL 262 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L LG NFR++V EL+ D + Y + + + + ++ Sbjct: 263 LTPVLGDGNFRASVAVELDHDRVEETREQY---GEAPKVTQEAIRDEKDIGQAALGVPGS 319 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 N P + ++ K + Y + + +++RL++AVV+N Sbjct: 320 LSNRP--APPSTASMPEAPHSAKNAQTRQYAYDRNVVQIKRSPVRVKRLNVAVVLNNAAA 377 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + + LA+++ I+ GI++ R D +T++S+DF + S Sbjct: 378 PGGG-----KAWAPAQLAQVDTILRDGLGIDADRDDALTVSSLDFRGTPVTESQP----- 427 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + T+ + +G LL L ++ I G ++ Sbjct: 428 WWKQPDNLVTIGTWAAWALGALLGFVFIFRPLLKVLRIW------ANGGRDPLSQGANAV 481 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 P A D+ Q + NL + L H+ + ER A++++ Sbjct: 482 SGGPEAPALAAAADADTQPLLLADANLPPIGSGAD--VLIAHLKHLAAQDPERVAEVIKP 539 Query: 549 WARSEI 554 W R + Sbjct: 540 WIRDDE 545 >gi|289523574|ref|ZP_06440428.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503266|gb|EFD24430.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 490 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 116/521 (22%), Positives = 196/521 (37%), Gaps = 64/521 (12%) Query: 45 SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104 Y+ L+ L+V D I L E+NI +R+ + ++I VP +V + R+ L +GLP Sbjct: 20 RERYEPLFSNLDVEDQAAIVNYLKESNIPYRVDPSFNAILVPRDVVYETRLSLVGEGLPR 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + G+ELFDK G+T F Q++ +RALEGE+ RTIQSI G+ + +V+IV+P+ F Sbjct: 80 GGA-VGFELFDK-MKMGMTDFQQKVGYLRALEGELTRTIQSIRGVQSCKVNIVIPEQKLF 137 Query: 165 RKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 + TASV++ + +AI HLV+ +V L +V V+DS G +L+ Sbjct: 138 LEEQFPATASVLLSLKPGFEMGPEQVKAIVHLVSHSVEGLSPDNVVVVDSKGAILSDMLD 197 Query: 223 ERN-------ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 E + + + + E+E + L G V LN D ++ Sbjct: 198 ESYFVLRNETVTSVQREMERQQELELERKARQMLERIFGPGKAVVRVRVFLNFDRRRTST 257 Query: 276 IVYDPDS---KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 + P V RS + ++ P A N+P P + ++ Sbjct: 258 REFVPGPSGRGVPRSDQSLEETYTGPGIPPGGAPGTTTNIPG--YVITPQTAGPSSYERT 315 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 E +NYEI T+ + +E+++ +V+V+ L + + V Sbjct: 316 ETTTNYEITTREQEVVYTPGGVEKITASVLVDGQ-------------LEQQMLNSLRQAV 362 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 +AA GIN RGD + + SM F ++ + + Sbjct: 363 AAAIGINEERGDELYVASMPFSAMEVPAVALAPSRRWLWIILAVLLALLICGG------- 415 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 L R+ + A E G L + Sbjct: 416 VIFFLRKKRKEEKPETAPAREEEGIPSLEELLKRPELLKEKGE----------------- 458 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +L E A I++ W + Sbjct: 459 -----------LAVLEQQLREYASKKPEEIAAIIKNWLLED 488 >gi|307315211|ref|ZP_07594790.1| flagellar M-ring protein FliF [Escherichia coli W] gi|331666532|ref|ZP_08367406.1| flagellar M-ring protein FliF [Escherichia coli TA271] gi|306905392|gb|EFN35929.1| flagellar M-ring protein FliF [Escherichia coli W] gi|315059474|gb|ADT73801.1| Lateral flagellar M-ring protein [Escherichia coli W] gi|323181532|gb|EFZ66952.1| flagellar M-ring protein FliF [Escherichia coli 1357] gi|323379968|gb|ADX52236.1| flagellar M-ring protein FliF [Escherichia coli KO11] gi|331065756|gb|EGI37640.1| flagellar M-ring protein FliF [Escherichia coli TA271] Length = 548 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244 AI HLV+ ++P L V+V+D G LLT + + I +I+ Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPESEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|91795006|ref|YP_564657.1| flagellar MS-ring protein [Shewanella denitrificans OS217] gi|91717008|gb|ABE56934.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217] Length = 565 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 104/562 (18%), Positives = 218/562 (38%), Gaps = 23/562 (4%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ Q ++ T + +++ +++ + + + S Y LY E + + Sbjct: 20 SLFSSAAQGWRRFTQGD--KQVMVLALLATVVASVIVIMLWTASQGYRPLYGSQENVETS 77 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I +RI + + V +GKAR+ LAA+G+ + SG + D +S G Sbjct: 78 QVIEVLEAEGIYYRIESHTGLVLVADDQLGKARMLLAARGV-KAKVPSGMDELDS-SSLG 135 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIR 178 + FM++ LEGE+AR+I S+ + +ARVH+ +P F + + + + Sbjct: 136 TSQFMEQAKYRHGLEGELARSIMSLKNVRSARVHLAIPKRSLFIRQTPELPTASVMLQLS 195 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIV 234 EA+ +LVA +V ++ V ++D G+ L+AN + + ++ Sbjct: 196 PGAELSQSQVEAVVNLVAGSVTGMETSGVKIVDQEGRFLSANINEDQDMTQARDRQITYT 255 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + N + L A LG +NF+ + A++N + + + DP S + + S D Sbjct: 256 RELEQNLMHNASSMLEAILGPNNFQVKIAAKVNFNQIEETKEALDPQSVLVQERTSSDDK 315 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + + N P + + ++E +++ + +L Sbjct: 316 N---AALAQGIPGALSNQPPQAAEGDKKDNT--RNLRQEANRQFDVGRSVRHIRYQQMQL 370 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E +S++V+VN + D+ L ++ +V A G +S RGD+ +I + F Sbjct: 371 ENISVSVLVNNTV-------ATGLTTDDAELTKLGSMVKDAIGFSSERGDSFSINAFAFS 423 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + ++ + +I L+ L L V + L D + E Sbjct: 424 VPTVAEFEPLPWWQVEDYQAYLRYLIGGLLGLGLILFVLRPLVSHLTFTAKHVDNETREP 483 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 ++ ++A + S+ + L L + Sbjct: 484 ETINLAKSAESTTAESNTTTRAAISQGHSAEKSTAEWLGGLNLPEPGSPLTVQMEHLGML 543 Query: 535 IEINEERFAKILRKWARSEIED 556 R A++L W + D Sbjct: 544 ANQEPARVAEVLAHWIGDKDAD 565 >gi|323171047|gb|EFZ56696.1| flagellar M-ring protein FliF [Escherichia coli LT-68] Length = 548 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 113/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGY+L DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYDLMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVAP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|306813320|ref|ZP_07447513.1| flagellar MS-ring protein [Escherichia coli NC101] gi|305854083|gb|EFM54522.1| flagellar MS-ring protein [Escherichia coli NC101] Length = 548 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 111/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + + I I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LTYCIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|256020214|ref|ZP_05434079.1| flagellar MS-ring protein [Shigella sp. D9] gi|332281376|ref|ZP_08393789.1| lateral flagellar M-ring protein [Shigella sp. D9] gi|332103728|gb|EGJ07074.1| lateral flagellar M-ring protein [Shigella sp. D9] Length = 548 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 112/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244 AI HLV+ ++P L V+V+D G LLT + + I +I+ Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ EL++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPELDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|323191522|gb|EFZ76783.1| flagellar M-ring protein FliF [Escherichia coli RN587/1] Length = 548 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 111/555 (20%), Positives = 216/555 (38%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++ V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMVGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGLILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 TAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P ++ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+++RGD ++++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + L + A +++ Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|149201593|ref|ZP_01878567.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035] gi|149144641|gb|EDM32670.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035] Length = 564 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 112/554 (20%), Positives = 211/554 (38%), Gaps = 25/554 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + R + A +L+ + L +AA + + L+ L ++ + AL+ A Sbjct: 28 MDGFIAQPALRRALPAIGVLLVVTLGLAAWLLLAPANRVTLHAGLPEAEKSLALDALTAA 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 +D R+ + +++V + AR+ LA QGLP + G D++ G + ++ Sbjct: 88 GMDARLDPSSGALTVAADQFHSARMLLATQGLP-EGATDGMSAIDEMP-MGTSRQIESAR 145 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188 R E ++AR+IQ + + AARVH+ +P+ +F + P ASV + Sbjct: 146 LRRMQELDLARSIQELRPVRAARVHLALPERSAFVRDSQPPRASVFLELAPGMALDQAQV 205 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNIN 246 AI LVAAAVP++ G+V+V+D TG LLT+ E + + + + ++ + Sbjct: 206 RAIVSLVAAAVPDMPRGNVSVVDQTGTLLTSPEEDPVQSEADRQMQHQRRLETLYRDRVL 265 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-PESA 305 L +G N V +++ +I Y PD+ + S+ ++ P + Sbjct: 266 SLLTPIVGAGNAAVEVTLDMDFTRSEITSEEYLPDTALRSEQSSSQQTSGAQAGGIPGAV 325 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 N +++ +S NYE++ + ++ R+ AV++++ Sbjct: 326 ANTPPNEAQMAEAATQGAKSGTTNSATSSTRNYEVSRRVETRQPQTAQINRVHAAVLLHR 385 Query: 366 --GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423 G + LAEI + +A G N+ RGD +T+ S F+ S Sbjct: 386 LPTPAAPAEGEATSAAPEAVPLAEIEALTRSAIGYNAERGDIVTVASAPFVVAPSVISAE 445 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 A + L L + L +R + N G + Sbjct: 446 --------RWYDAAWLPTLGRTLAQLALFGIIVLGVVRPILNRLLPPVGATATTGMTYGD 497 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 I +L + Q + + + N + + ++ L M R A Sbjct: 498 AIEV--------PRGESLSALRQRLETAAPNAEDLNGAITYEEKIDLLRQMAGSETNRIA 549 Query: 544 KILRKWARSEIEDR 557 + + EDR Sbjct: 550 GVFKSMITPTGEDR 563 >gi|114562360|ref|YP_749873.1| flagellar MS-ring protein [Shewanella frigidimarina NCIMB 400] gi|114333653|gb|ABI71035.1| flagellar M-ring protein FliF [Shewanella frigidimarina NCIMB 400] Length = 558 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 96/558 (17%), Positives = 215/558 (38%), Gaps = 24/558 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + R +I+ + + + L + + P Y L K+E +++ + Sbjct: 15 ENKSGLLGGVGGADMMRQVIMILALAICLALAVFVMMWAQEPDYRPL-GKMETAEMILVL 73 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + ID++I+ + + VP + ++ L+ G+ SS+ + Y ++ + FG++ Sbjct: 74 DVLDKNQIDYQINVD--VVKVPEDKYQEVKLLLSRAGVQSSTQANDY--LNQDSGFGVSQ 129 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPS 183 M++ ++ E +AR I+ + I A+V + +P F + ++P+A+V++ Sbjct: 130 RMEQARLKQSQEQNLARAIEELKSISRAKVILALPKENVFARNASKPSATVVVNVRRGGL 189 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241 + +AI +V +AV L+ VTV DS G+LL + + + + +VQ + E Sbjct: 190 GQEEIDAIVDIVGSAVQGLEPARVTVTDSNGRLLNSGSQDGASSRARREQELVQQQEAEY 249 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 I L LG +NF S V +N + + PD RS + + + S Sbjct: 250 RKKIESILMPILGPENFTSQVDVNMNFTAVEQTAKRFSPDLPAIRSEMIIERNSSGQNS- 308 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + KE NYE++T T + R Sbjct: 309 -GGIPGALSNQPPMESDIPQVAGEATASTMSGDSSKEATRNYELDTTISHTRQQIGVVRR 367 Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +S++V +N + G A + + L I +++ A G +++RGD + + ++ F++ Sbjct: 368 VSVSVAINFKPGQVDENGVVARVPRTEQELTNIRRLLEGAVGFSTQRGDALEVVTVPFMD 427 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + F I + + L++ + + + + + Sbjct: 428 QLIEALPEPDMWEEP----WFWRAIKLALGAIVILVLILAVVRPMLKKLTNPN----GIN 479 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + P + + + L++ + N + + ++ Sbjct: 480 MPDDIRPGHELAEIEDQYAADTLGMLNTKEAEYSYADDGSIQIPNLHKDDDMIKAIRALV 539 Query: 536 EINEERFAKILRKWARSE 553 E ++++ W + Sbjct: 540 ANEPELSTQVIKNWLQDN 557 >gi|284989556|ref|YP_003408110.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160] gi|284062801|gb|ADB73739.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160] Length = 527 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 104/555 (18%), Positives = 219/555 (39%), Gaps = 39/555 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + + + ++ + +++ + ++ ++ +P Y L+ L +D + Sbjct: 4 ALAGPVERIRSALATISLGQKVVIGLLTAGLLLGGFFFYRWITAPTYAPLFSNLASTDAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+ A + ++D G +I VP+ V R+ ++ +GLP + +++GY L D+ Sbjct: 64 AIVDELNAAGAAYELADGGGTIMVPNEQVYDLRLSMSGKGLP-AGNDTGYALLDE-QGIT 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + F Q++T RAL+ E+ART++S+ G+ A VH+ +P+ F A PTASV++ Sbjct: 122 TSEFQQQVTYQRALQDELARTLESLEGVRTAVVHLALPEEEVFASDEAEPTASVLLDLAP 181 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237 +A+ +LV++++ +D VTV D+TG +L+A + Q Sbjct: 182 GTGLDSGQVQAVTNLVSSSIEGMDPEQVTVADATGAVLSAPGQGVTSAAGDARSQLEQDY 241 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + N L LG + +V A++++D + + + + + + Sbjct: 242 EARLASNAQAVLDPILGPGRAKVSVRADVDLDQRSTTSETHTYEEGTPPISESTTTEEYT 301 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + +N +K+ +N + T ++ RL Sbjct: 302 GNGAAVGGILGPENQADA-----GGGTGDSAYNKESTTANNAVGTTVETVEGAPGRINRL 356 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +++VV+++ + A+I +V A G++ RGD IT+ SM F Sbjct: 357 TVSVVMDEAVAGNLN------------QAQIQALVGNAIGLDVARGDDITVASMAFDTTA 404 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + + + +LV +L R +D + E+ Sbjct: 405 ADRAAEELAAAEEAERQAQLWSMVKTGGIALLVLVVWLRSRRGREDEEDEDYEALELADD 464 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + I T + DN AL+ + + + + M+ Sbjct: 465 VMAELDRIRIESTRAVPVVDNAALE----------------MEAAERARVRGEIATMVSE 508 Query: 538 NEERFAKILRKWARS 552 + A +LR W Sbjct: 509 KPDEVAAMLRGWLSE 523 >gi|188997543|ref|YP_001931794.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1] gi|188932610|gb|ACD67240.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1] Length = 536 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 112/520 (21%), Positives = 218/520 (41%), Gaps = 41/520 (7%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102 ++ Y LY L D I ALS+ NI +++ NG+ I VP V AR+ LAA+GL Sbjct: 46 LHKEDYAVLYSGLAPDDAGNILTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGL 105 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S G+E+F + G T F + + +RA+EGE+ RTI+ + ++ A+V+I +P Sbjct: 106 P-SGKVVGFEIF-EEPKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNIALPKDS 163 Query: 163 SFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 F + ASV+I+ + +AI LV+ AVPNL +VTV+D+ G++L+ Sbjct: 164 IFVRQEDEAKASVIIKLWPDKDLTKEQIKAIVFLVSRAVPNLKPENVTVVDNRGRVLSDL 223 Query: 221 EMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 E + K++ + + ++ ++E +I LA +G + EL ++ + Sbjct: 224 IDEESANESGDKTVDLKRKLERQLEKDIQSMLAKVVGPERVVVKASVELETGKVHQKDEI 283 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 YDPD S R K+++ E+ + N+P V + V + + +N Sbjct: 284 YDPDKVAVVSERKIKESETEESQTINAPPGTPTNVPPVMNTPVMGGGGKKKEK-SDITTN 342 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVS 393 Y+++ I T + ++++S+ V+++ + + L ++ Sbjct: 343 YDVSKSMIETQKPLFTIKKVSVGVMIDGKYKEIKDKDGNIIKQFEPRSQQELQSYENLIK 402 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 +A G + RGD +T+ S+ F + + + Sbjct: 403 SAIGFDPNRGDQVTVISVPFEATSTQEEVSTKQQN-----------------------LI 439 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 + + L + + K I++ + + + + + Sbjct: 440 MYVIAGILLLLILGLLAFIFIKKKKQKKEEIITATTLSAPLAG------VAAEALAKKYE 493 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +S ++ L++L + E N + A I+ KW + + Sbjct: 494 EEKSLVSEIEKLPEYLKILEIAEENPQMIANIITKWIKED 533 >gi|119775432|ref|YP_928172.1| flagellar MS-ring protein [Shewanella amazonensis SB2B] gi|119767932|gb|ABM00503.1| flagellar M-ring protein FliF [Shewanella amazonensis SB2B] Length = 565 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 89/560 (15%), Positives = 209/560 (37%), Gaps = 24/560 (4%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + S R + + + + + L + + P Y L K E ++ ++ Sbjct: 19 ENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEPEYRPL-GKFEAQEMIQVL 77 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I +++ + + VP R+ L+ G+ ++S + + + FG++ Sbjct: 78 DVLDKNKIPYQVDFD--VLRVPEDKYQDIRLLLSRNGV-DAASTTNQDFLSQDMGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPS 183 +++ + E +ARTI+ + + A+V + +P F + ++ +A+V++ Sbjct: 135 RLEQARLKHSQEQNLARTIEELKSVSRAKVILALPKENVFARNQSKASATVVVTSRRGGL 194 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241 + +AI +VA+AV L+ VTV DS G+LL + + + L +V+ + E Sbjct: 195 GQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARARRELELVKQKEAEY 254 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 ++ L LG +N+ S V ++ + ++PD RS + E + Sbjct: 255 RAKVDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRSEMTLETQTSGEANM 314 Query: 302 PESAVTVEQNMPHVSDRKVPL------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + +E NYE++T T + Sbjct: 315 --GIPGALSNQPPMESNIPQTLQEAQDKAQANGNSHREATRNYELDTTISHTRQQIGVVR 372 Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 R+S++V V+ G+ + ++ LA I +++ A G + +RGD+I + ++ F+ Sbjct: 373 RVSVSVAVDYKTGEANTEGQVNRVARTEAELANIRRLLEGAVGFSGQRGDSIEVVTVPFM 432 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + + F + + L++ + +V Sbjct: 433 DQLVEEVPELPMWEQP----WFWKAMKLASGSLAILVLILFVVRP----LLKKLLLTDKV 484 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + + L++S+ + N + + + Sbjct: 485 DMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKAIRAL 544 Query: 535 IEINEERFAKILRKWARSEI 554 + E ++++ W + + Sbjct: 545 VANEPELSTQVVKNWLQQDN 564 >gi|218703511|ref|YP_002411030.1| flagellar MS-ring protein [Escherichia coli UMN026] gi|293403341|ref|ZP_06647432.1| predicted protein [Escherichia coli FVEC1412] gi|298378953|ref|ZP_06988834.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302] gi|300898054|ref|ZP_07116423.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] gi|218430608|emb|CAR11474.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli UMN026] gi|291429194|gb|EFF02214.1| predicted protein [Escherichia coli FVEC1412] gi|298280066|gb|EFI21570.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302] gi|300358232|gb|EFJ74102.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1] Length = 548 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIMHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+ +RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|332162913|ref|YP_004299490.1| flagellar M-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667143|gb|ADZ43787.1| Flagellar M-ring protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 541 Score = 296 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 112/559 (20%), Positives = 231/559 (41%), Gaps = 32/559 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q + LG+ + IL + + + + +S Y L+ E V + Sbjct: 1 MLDKIKQQLPAIR-LGKNQKSILMGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + I V + +G+ARI LAA+G+ +++ +GYEL D+ G Sbjct: 60 VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179 + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF + + + + ++ Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTSVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLKADQVGAIVQLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E +I L++ +G +N+R +V +L++ + Y R + + Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRVEETLERY---GAEPRVSDENIQQE 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P + P ++ + + Q Y + H +KLE Sbjct: 296 NGNEDMAMGIPGSLSNQPAAQPKNANAPAAM---SRSQAQRKYAYDRDIRHVRHPGFKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AV++NK A + L E+ +++ A GI+++RGD++T+ + F Sbjct: 353 KMTVAVILNKSA-------PALEKWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + + +LL G+ L + D K + Sbjct: 406 PTLIDEPVIAWWQDATTFRW----VEIAGIGLLSLLFLLFGVRPLMARLSRRDDKHSALA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + +++ + ++ A S + + L + Sbjct: 462 MAENIDGLNVTNTTS------ESSATTEPMLPGSSFKEDDNLPPQGSGLEIKISHLQQLA 515 Query: 536 EINEERFAKILRKWARSEI 554 + ER A+++++W + Sbjct: 516 QSETERVAEVIKQWINNNE 534 >gi|283834471|ref|ZP_06354212.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] gi|291070018|gb|EFE08127.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220] Length = 560 Score = 296 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 117/574 (20%), Positives = 230/574 (40%), Gaps = 39/574 (6%) Query: 1 MA-ILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M ++ ++ QF S + L + L L + V + + + + Y +LY E Sbjct: 1 MNELIKKVTQFLPSFSFRLDGNKRLALLAAAAVAATAIIVSVLWNGNHGYVSLYGSQENL 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 V++I L +++RI I VP + K R+ LAA+G+ + SGYEL DK Sbjct: 61 PVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAMLPSGYELMDKDE 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASV 175 G + F+Q I R+LEGE+A++I ++ + +ARVH+ + + SF + V Sbjct: 120 VLGASQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSFVVSDEPQNSASVVV 179 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSL 231 + + AI HLV+ +VP+L V+V+D G LL+ E K Sbjct: 180 RLHYGSKLDLDQVNAIVHLVSGSVPDLKASLVSVVDQAGNLLSDGIGAGEAVSAATRKRD 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 I++ IQ + ++ L + +G N+R +V+ +L++ + Y + R Sbjct: 240 QILKDIQDKTRASLANVLDSLVGTGNYRVSVMPDLDLSNIDETQEHY---GDTPKVNREE 296 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEI 340 N P ++ +V + + E + +Y Sbjct: 297 TVLDSDTNQIAMGIPGSLSNRPPLAANQVANGTAAGTAPEESRQPAALSKHSENKRDYSW 356 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + H + ++RL++AVV+N+ A + ++ +++ A GI++ Sbjct: 357 DRSVEHIQHPGFDIKRLNVAVVLNQSA-------PALKNWKPEQTTQLTALLNNAAGIDA 409 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 +RGD ++++ ++F+ + V + D + + + + LL+ + L Sbjct: 410 KRGDNLSLSLLNFVPQSVPVEPVVPLWKDDSILAW----VRLIGCGLLALLLLLFVVRPL 465 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + + + +P I + T D N ++ S + Sbjct: 466 MKRLTAERRRTPTPELALDAAPIAIPADKTHFAAAEDE----RKNIELPSFPGDDSLPSQ 521 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + L + + +R A++LR+W S Sbjct: 522 SSGLEVKLEFLQKLAMSDTDRVAEVLRQWITSNE 555 >gi|42524763|ref|NP_970143.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100] gi|39576973|emb|CAE78202.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100] Length = 549 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 119/552 (21%), Positives = 225/552 (40%), Gaps = 24/552 (4%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 ++QF + +LG T+ L + +V ++ + F + Y L+ + V+ I Sbjct: 9 VVQFREFFKNLGPTKRLSVIAVTVIAAVALFTMLFMASGKDYVPLFTNIPTEQVSTIVGK 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSF 125 L+E N+ F++ D G +I++P ++ ++ L ++ G P S G E+FDK + FG+ S+ Sbjct: 69 LNEKNVPFQLRDGGKTIAIPKELLHSTQMTLMSEIGSPKMGS-IGLEIFDKQD-FGMNSY 126 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183 Q+I RAL+GE+ R I +++ + ++V + +P+ +F + G + +ASV++ Sbjct: 127 AQKINYQRALQGELMRAINTLTAVKQSKVILALPNKKTFLEEGGQASASVVVELHQGKEL 186 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIE 242 + +R+LVA +V +D VTVLD GK+LT L + I+ ++E Sbjct: 187 TPEQVRGVRYLVANSVEGMDADKVTVLDERGKVLTRVADGTTGGSNELLDLKAKIEGDLE 246 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 I L +G + V A LN E DPD RS + +++ + P Sbjct: 247 DRIEDILTKVVGHAKVVAKVDATLNHRVISSVEESVDPDKTAIRSQQSEEESLDGSRTNP 306 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 N+P D+ R K+ + +NY++ LER+S+AVV Sbjct: 307 AGVPGSRSNLPGAEDQGTVGFRQDVK--KEIKTTNYDVPKTVRNIRESAGNLERVSVAVV 364 Query: 363 VNKGR----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 V+ + + + + L + +V A G N+ RGD++ I ++ F Sbjct: 365 VDGMMTTTTKADGTTETTWKPRSAEELRKYEDLVKNAIGFNTARGDSVKIENIQFQPEDF 424 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 + + + + + + L F+ + + E Sbjct: 425 SEAEKILTTLER--KKLIHALFKWALLGFSLALFFFIVVRPFMQWITDSFQDSVEEMLPR 482 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + +V +P + AL + I + R+L + + Sbjct: 483 TIEELEELQSVD-NTLPGMSTALPVLQESIDPEKAES---------ELLKDRILSSMSRD 532 Query: 539 EERFAKILRKWA 550 EE+ A W Sbjct: 533 EEKAANAFGMWL 544 >gi|22127339|ref|NP_670762.1| flagellar MS-ring protein [Yersinia pestis KIM 10] gi|45442785|ref|NP_994324.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108809069|ref|YP_652985.1| flagellar MS-ring protein [Yersinia pestis Antiqua] gi|108810737|ref|YP_646504.1| flagellar MS-ring protein [Yersinia pestis Nepal516] gi|145597806|ref|YP_001161882.1| flagellar MS-ring protein [Yersinia pestis Pestoides F] gi|150260260|ref|ZP_01916988.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125] gi|162418149|ref|YP_001604857.1| flagellar MS-ring protein [Yersinia pestis Angola] gi|165924858|ref|ZP_02220690.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165939096|ref|ZP_02227648.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|166009035|ref|ZP_02229933.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166211925|ref|ZP_02237960.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|167398942|ref|ZP_02304466.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419368|ref|ZP_02311121.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425084|ref|ZP_02316837.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466352|ref|ZP_02331056.1| flagellar M-ring protein FliF [Yersinia pestis FV-1] gi|170022960|ref|YP_001719465.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII] gi|218927901|ref|YP_002345776.1| flagellar MS-ring protein [Yersinia pestis CO92] gi|229837397|ref|ZP_04457560.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229840610|ref|ZP_04460769.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842839|ref|ZP_04462991.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. India 195] gi|229900934|ref|ZP_04516058.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516] gi|270487684|ref|ZP_06204758.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294502778|ref|YP_003566840.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|21960421|gb|AAM87013.1|AE013949_7 putative flagellar M ring protein [Yersinia pestis KIM 10] gi|45437651|gb|AAS63201.1| putative flagellar M-ring protein [Yersinia pestis biovar Microtus str. 91001] gi|108774385|gb|ABG16904.1| flagellar M-ring protein [Yersinia pestis Nepal516] gi|108780982|gb|ABG15040.1| putative flagellar M-ring protein [Yersinia pestis Antiqua] gi|115346512|emb|CAL19388.1| putative flagellar M-ring protein [Yersinia pestis CO92] gi|145209502|gb|ABP38909.1| flagellar M-ring protein [Yersinia pestis Pestoides F] gi|149289668|gb|EDM39745.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125] gi|162350964|gb|ABX84912.1| flagellar M-ring protein FliF [Yersinia pestis Angola] gi|165913052|gb|EDR31677.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. IP275] gi|165923058|gb|EDR40209.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. F1991016] gi|165992374|gb|EDR44675.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. E1979001] gi|166206671|gb|EDR51151.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. B42003004] gi|166963362|gb|EDR59383.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051446|gb|EDR62854.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055847|gb|EDR65628.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749494|gb|ACA67012.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII] gi|229682273|gb|EEO78365.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516] gi|229690106|gb|EEO82163.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. India 195] gi|229696976|gb|EEO87023.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705520|gb|EEO91530.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|262360810|gb|ACY57531.1| flagellar M-ring protein [Yersinia pestis D106004] gi|262364755|gb|ACY61312.1| flagellar M-ring protein [Yersinia pestis D182038] gi|270336188|gb|EFA46965.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27] gi|294353237|gb|ADE63578.1| flagellar M-ring protein [Yersinia pestis Z176003] gi|320016722|gb|ADW00294.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 546 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 123/559 (22%), Positives = 231/559 (41%), Gaps = 27/559 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q LG IL S + + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKLSP-GQLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA-- 179 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD ++ + + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDPRIND---ENIQQE 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P + P ++ + + Q Y + + YKLE Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ L+ F ++R Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVL---WFGVRPLMKRYSRKGSENLPLAI 462 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + ++ + S +L + + +K L + Sbjct: 463 SSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETK--IAHLQQLA 520 Query: 536 EINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 521 QSETERTAEVIKQWINSNE 539 >gi|167630289|ref|YP_001680788.1| flagellar m-ring protein flif, putative [Heliobacterium modesticaldum Ice1] gi|167593029|gb|ABZ84777.1| flagellar m-ring protein flif, putative [Heliobacterium modesticaldum Ice1] Length = 511 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 121/552 (21%), Positives = 198/552 (35%), Gaps = 55/552 (9%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 L R + LIL ++ I+ A + P Y L+ L+ +D I L E +D Sbjct: 1 MGRLSRQQKLILGGSLVAIIVSLAAFVYLAGRPDYVPLFQNLDPADAGAIQAKLKEQKVD 60 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 F++S++G +I VPS RI LA GLP + G+E F + FG T +EI Sbjct: 61 FQVSEDGKTILVPSKDQASLRIELANSGLPK-GTGWGFETF-NESRFGETEKEKEIRLKI 118 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191 A E E++RT+Q+I G+ ARV IV F+ TASVM+ + + I Sbjct: 119 ATETELSRTLQNIPGVENARVMIVPATDSLFKGNATDATASVMLILKPYATLEEKQIRGI 178 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---------SLSIVQAIQHEIE 242 HLV+ +V L +VTV+D+TG +L+ K L + + + +E Sbjct: 179 IHLVSRSVKQLKPENVTVVDNTGNVLSEGLFTAGGSDKVNLDGLAKAQLQMKKDFEASLE 238 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 L LG N V EL+ Q+++++ + + + + S Sbjct: 239 QKAQDMLNRALGAGNAVVKVSTELDFSQQEVKDVKL----GKPVPLSTRETEEAGQGSTG 294 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAV 361 N+P + + K + N EI T L+RLS++V Sbjct: 295 SGTPGTSANIPTQQA----TNNNTSSYSKTDSIVNNEIPKTETHTVTPPGSSLKRLSVSV 350 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 +VN+ E + K + I + R + I++ M F + + Sbjct: 351 MVNRTLTPEE---TQQLEKAVAQAVGIRYPIQPPAAGQPDRVEQISVLGMAFDRSAVDEM 407 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 M + F + L+ L+ GL+A R A E Sbjct: 408 N-----RMAEEQKAFQRYLMIGGALIALALLVMAGLYARRAYLRRKPAPAPEPLPSPAFD 462 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + V ++ + E N E Sbjct: 463 TSVPTPPVPELSPEEMEKLA-------------------------LREKIEELSETNPEA 497 Query: 542 FAKILRKWARSE 553 A++L+ W E Sbjct: 498 VARLLKTWLVDE 509 >gi|258621104|ref|ZP_05716138.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|258626177|ref|ZP_05721025.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|262170880|ref|ZP_06038558.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] gi|258581532|gb|EEW06433.1| flagellar M-ring protein [Vibrio mimicus VM603] gi|258586492|gb|EEW11207.1| flagellar M-ring protein [Vibrio mimicus VM573] gi|261891956|gb|EEY37942.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451] Length = 579 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 103/563 (18%), Positives = 216/563 (38%), Gaps = 30/563 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ + + L R ++L I + + L + F+V P L E ++ Sbjct: 34 DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 92 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + +++ +G++I VP S ++ + GL + +G E+ + FG Sbjct: 93 PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFG 149 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RA 179 ++ +++ + E ++A+ I+ + I ARV + +P F + +ASV + R Sbjct: 150 VSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRT 209 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 + +A+ +VA+AVP + VTV D G+LL++ + + Q Sbjct: 210 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 269 Query: 240 E--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 E + I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 270 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 329 Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350 + N P + + KE N+E++T Sbjct: 330 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNFELDTTISHERKQ 387 Query: 351 NYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + + R ++AV V + + G ++ L I +I+ G + RGD + + Sbjct: 388 SGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLNVL 447 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 SM F E ++ V + + + +ALV ++ L+ L A+++L N Sbjct: 448 SMPFAEPEVEQIADVPIWEHPNFNDWIRWLASALVIIIVVLV---LVRPAMKKLINPAAD 504 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ G + G + + + N + + Sbjct: 505 SDDQMYGPDGMPIGADGETSLIGSDIDSGELFEFGSGIDLP---------NLHKDEDVLK 555 Query: 530 RLLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 556 AVRALVANEPELAAQVVKNWMQN 578 >gi|84514816|ref|ZP_01002179.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53] gi|84510975|gb|EAQ07429.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53] Length = 616 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 101/592 (17%), Positives = 216/592 (36%), Gaps = 53/592 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 ++ + + ++L + + +P L+ L ++ + AL Sbjct: 28 LRTFYMQPAVQRAFPVIAAALLVVLGLILYLILQAPQRTTLFAALPEAEKAAVMDALRNN 87 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 D +I I+VP+ +R+ LAAQGLP S GY + G + ++ + Sbjct: 88 GTDVQIDPVTGDITVPTGEFYNSRMSLAAQGLPQS-MPDGYSVL-TDMPMGTSRSVESMR 145 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYKSA 188 ++ E E+AR+I I + A+RVH+ +P+ +F + PTASV ++ + Sbjct: 146 LKQSQEVELARSINEIDVVSASRVHLAIPERSAFARNAQNPTASVFVQVMPGRSLSEQQV 205 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246 AI +LV+++V NL VTV++ G+LL+ N+ ++ + L +++ I Sbjct: 206 MAIVNLVSSSVANLPKTSVTVVNQNGQLLSDTVNDPATDLADRQLEYQLRLENIYRTRIE 265 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +G N + V +++ + E + PD S +++ + + +E SQ Sbjct: 266 SLLTPIVGPGNVSAQVSLDIDFTRTERTEDMVIPDQSALLSEQVAVEEEVAEASQ--GIP 323 Query: 307 TVEQNMPHVSD-----------------------------------RKVPLPRSLENTDK 331 N P + P Sbjct: 324 GTVGNTPPPRPELEQPAGAADGQAPAEAGATAEAGANTVAEIYAPVDRNTGPGQPRLRSS 383 Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GRLTEVLGRSADQG---KIDSYLA 386 NYE++ + ++ + +AV++ + G + S L Sbjct: 384 DSTMRNYEVSRTVTSENSPMTRINGVHVAVLLRETLPVAPTEDGDAVAAPAIGLDPSRLD 443 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 E+ +VS GI+ RGDT+ ++S+ F+ + S +++ + + Sbjct: 444 EVKSLVSRTVGIDESRGDTLIVSSLPFISPEAVISSL--SGSTELVWHEDPWIREMMRNA 501 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS--AVTTGLMPNDNIALDSS 504 + +++ + L ++ L A GE GG + + M + Sbjct: 502 LMVIVLAVVTLGLIKPLLTQFLASSGESGGYGNVITTEDGEIIDMDVIEMEEGQTLEEIK 561 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEERFAKILRKWARSEIE 555 + S +++ S + + ++ R + + + +++ Sbjct: 562 AKLKPKKSTISAEMLDTANSYDDKVALIRMIVADEAGRVSNVFKALMEDDLD 613 >gi|84388111|ref|ZP_00991007.1| flagellar M-ring protein [Vibrio splendidus 12B01] gi|84377178|gb|EAP94048.1| flagellar M-ring protein [Vibrio splendidus 12B01] Length = 580 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 96/557 (17%), Positives = 207/557 (37%), Gaps = 30/557 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 41 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I++ + G++ISVP+S ++++ GL + N+G ++ + FG++ ++ Sbjct: 100 DLQKIEYTL--EGNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRVE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + A+V + +P F + +ASV + + K Sbjct: 157 QERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243 +++ +VA+AVP + +TV D G+LL + + + + + + Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLNSGSQDPMSAARRKEHELERNQEQALRE 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +L+ + +DP++ RS +D T Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTV--A 334 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + + KE N+E++T + + R Sbjct: 335 GIPGALSNQPPADASIPQDVAQMKDGSMTGQGSVHKEATRNFELDTTISHERKQSGTVNR 394 Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 395 QTVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAP 454 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 V + + +ALV +V L+ L A+++L N ++ Sbjct: 455 QVTDIVADVPIWEHPNFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAADDDDQMY 511 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G + G + N + + + ++ Sbjct: 512 GPDGMPIGADGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562 Query: 536 EINEERFAKILRKWARS 552 E A++++ W Sbjct: 563 ANEPELAAQVVKNWMVD 579 >gi|157376198|ref|YP_001474798.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3] gi|157318572|gb|ABV37670.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3] Length = 569 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 92/551 (16%), Positives = 212/551 (38%), Gaps = 28/551 (5%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 R + + + + + L + + P Y L K+ ++ ++ L + I + I Sbjct: 34 DMLRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMSTQEMIQVLDVLDKNKIKYEID 92 Query: 78 DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137 + + VP ++ L +G+ S++S+S Y + + FG++ M++ + E Sbjct: 93 VD--VVKVPEDKYQDVKLMLTREGVDSAASSSDY--LSQDSGFGVSQRMEQARLKHSQEL 148 Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIRHLVA 196 +AR I+ + + A+V + +P F + ++P+A+V+I A + ++I +VA Sbjct: 149 NLARAIEELRNVTRAKVILAIPKENVFARNRSKPSATVVINARRGSLGQEEVDSIVDIVA 208 Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254 +AV L+ VTV DS G+LL + + + +VQ + E + L LG Sbjct: 209 SAVQGLEPTRVTVTDSNGRLLNSGSQDAVSARARREQELVQQKESEYRNKVESILMPILG 268 Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 +NF S V ++ + + Y+PD RS + S + N P Sbjct: 269 PENFTSQVDVSMDFTSVEQTAKRYNPDLPALRSEMTVE--NNSNGATTGGIPGALSNQPP 326 Query: 315 VSDRKVPLPRSLENTDK---------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + + + + +E N+E++T T + R+S++V V+ Sbjct: 327 MEANIPQEALNNQADAESNSSSGSSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDF 386 Query: 366 GR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 G+ + + + L+ I +++ A G ++RGD I + ++ F++ + + Sbjct: 387 KSGSAGEDGQVSRVPRTEQELSNIRRLLEGAVGFTTQRGDIIEVVTVPFMDQLIEDVPAP 446 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 ++ F I + + L++ + + + D+ V Sbjct: 447 ELWEQP----WFWRAIKLALGGIVILVLILAVVRPMLKRLIYPDS----VKLPDEPRFGD 498 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 + + + L+ + + + + ++ E + Sbjct: 499 ELAEIEDQYASDTLGMLNRPEAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPELSTQ 558 Query: 545 ILRKWARSEIE 555 +++ W + + Sbjct: 559 VVKGWLQDNEQ 569 >gi|226950075|ref|YP_002805166.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto] gi|226842546|gb|ACO85212.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto] Length = 526 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 100/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ +N ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|188492056|ref|ZP_02999326.1| flagellar M-ring protein FliF [Escherichia coli 53638] gi|188487255|gb|EDU62358.1| flagellar M-ring protein FliF [Escherichia coli 53638] Length = 548 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 113/555 (20%), Positives = 218/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + ++ Y + Y + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTSNRGYVSFYGRQENLPVSQIVSVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDVPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQDA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMQEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|170755222|ref|YP_001782279.1| flagellar MS-ring protein [Clostridium botulinum B1 str. Okra] gi|169120434|gb|ACA44270.1| flagellar M-ring protein FliF [Clostridium botulinum B1 str. Okra] Length = 526 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 100/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ +N ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|134300247|ref|YP_001113743.1| flagellar MS-ring protein [Desulfotomaculum reducens MI-1] gi|134052947|gb|ABO50918.1| flagellar M-ring protein FliF [Desulfotomaculum reducens MI-1] Length = 521 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 116/564 (20%), Positives = 216/564 (38%), Gaps = 55/564 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M D L + + + R +++ V V + + + P+Y L LE D Sbjct: 1 MNFNDLLERLKQRWQETSQNRKVLVILVSTVVLAGLVYLAMTLTKPNYAILLGDLEPKDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L I +++ D G++I VP V + R+ LA+ GL + +G+ELFDK + F Sbjct: 61 GDIVAQLESEKIPYQLIDQGTTILVPQEQVDEIRVKLASDGL-LTGVGNGFELFDK-SKF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T F Q+I+ RAL+ E+ RTI + G+ ARVH+V+P F + +ASV+++ Sbjct: 119 GETDFEQQISYQRALQEELRRTITKVEGVEQARVHLVLPRKSVFIEEEGTASASVVVKLK 178 Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---------- 228 + + + L+ +V L +V ++D+ G +L + + Sbjct: 179 PRAKLKAEQVKGLNDLIIGSVEGLQAENVHIIDTEGNVLNDFLKDSSGTPGNGFSGTILE 238 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + I + + E+E + LA LG + + V AE++ + Q P V Sbjct: 239 RQQQIRRTYEKELENRVQNMLAKVLGPNKAVAMVTAEMDFNQLQTNTTEVVPGQVVSERS 298 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + S S + K ++ NY+ T++ + Sbjct: 299 IKEQGSDGSGGGVTG-----STTQMPGQSIPAETSTSQNSYIKTDDTKNYQHGTRTQSEV 353 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 KL +LS AVV+++ ++ KIV+AA G + +RGD IT+ Sbjct: 354 QAPGKLIKLSTAVVLDESVKNLD-------------RTQVEKIVTAAIGFDDQRGDQITV 400 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++M F +Q + + + T+ + L+ LL+ L R+ Sbjct: 401 SAMTFDRSQYDLDQDLPDNSQKEKELFYMTIAAVVGGLLLLLLLVAYWLRRRRK------ 454 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 ++ ++ S +++ K Sbjct: 455 -----------------NAEQELQVIEETTPMPIESVTTKEEEEEEEEAQWEIPPPKDKQ 497 Query: 529 LRLLHMIEINEERFAKILRKWARS 552 +L + + + A +L+ W R Sbjct: 498 KQLKELAQERPDDIASVLKVWLRE 521 >gi|170760264|ref|YP_001787983.1| flagellar MS-ring protein [Clostridium botulinum A3 str. Loch Maree] gi|169407253|gb|ACA55664.1| flagellar M-ring protein FliF [Clostridium botulinum A3 str. Loch Maree] Length = 526 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 98/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L + G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLESVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI++ Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTISVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|269792946|ref|YP_003317850.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100581|gb|ACZ19568.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans DSM 6589] Length = 524 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 120/568 (21%), Positives = 204/568 (35%), Gaps = 60/568 (10%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + +QL + L R + L + + + F YD L+ L + D Sbjct: 1 MDRLKEQLERLKGFFLGLERWQRYSLVGAGALVLASLVLLAFVAGRTAYDPLFSGLTMED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L E I F++ ++I VP V +ARI LA G+P G+E+FD+ Sbjct: 61 QGAVVEYLKEQKIPFKVDPGANAILVPRRNVYEARIALAQMGIPKGGV-VGFEIFDQ-PK 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G+ F Q + RALEGE++RTI I + ARV IV+P+ F + TASV++R Sbjct: 119 MGMNDFQQRVAYARALEGELSRTISKIDAVEEARVSIVIPEQRLFLEEQRPSTASVLVRL 178 Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----------NEMERNI 226 + I +LVA +V L DVTV+D++GK+L+ R + Sbjct: 179 KPGREIGQEQVRGIVNLVARSVEGLRPEDVTVVDTSGKVLSDLIHDDNLIYMSGSDGRAV 238 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 + + + E+E + L G V EL+ D + + P + Sbjct: 239 SSVQRELERQQEQELERKVRVMLEKVFGPGKAVVRVRVELDFDKKSTSRREFIPGPDGKG 298 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSI 345 IR ++ + S T ++ P +K + +NY+I T+ Sbjct: 299 VIRSQQNVEESYTGPGTPPGGAPGTTTNIPGYVVNPNQGGNVEYNKTDTVTNYDITTQES 358 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T ++RLS +V+V+ ++ + + V+AA GI+ RGD Sbjct: 359 QTQSTPGAIKRLSASVIVDGQ-------------LDEAASQNLRQTVAAAIGIDEARGDR 405 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + I +M F + + R + L+ L+ FL + Sbjct: 406 LVIQAMKFDTT--LADQMLAQLEAERRQRLIGAALVGLLVLLAAGGFGFLWYRRRKLAAL 463 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + L + + T Sbjct: 464 ARLVPQEGEQKAPSLKELLENPELMTAQGE----------------------------LA 495 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 + +L N E A +++ W E Sbjct: 496 ILEEQLRLYASNNPEEVANLIKNWLAEE 523 >gi|169831911|ref|YP_001717893.1| flagellar MS-ring protein [Candidatus Desulforudis audaxviator MP104C] gi|169638755|gb|ACA60261.1| flagellar M-ring protein FliF [Candidatus Desulforudis audaxviator MP104C] Length = 518 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 118/546 (21%), Positives = 209/546 (38%), Gaps = 45/546 (8%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + +L T + L +++ +++ FV +Y L+ LE + I L Sbjct: 12 ERWQALSTTHKVALVLLVIGSLLVLYYLAQFVRQMNYTTLFAGLEPREAGAIVEQLDGMR 71 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I + +SD G++I VP + V +ARI LA G + +G+ELFD+ G+T F Q++ Sbjct: 72 IPYMLSDGGTTIQVPRAQVDQARIQLATSG-ALGADGAGWELFDRT-KLGVTEFEQQVNY 129 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAE 189 RAL+ E+ RTI + + AARVH+V+P+ F A PTASV ++ Sbjct: 130 QRALQEELRRTIVQLDEVEAARVHLVLPEKSIFATEKAPPTASVAVKLRPGTDLNQSQVR 189 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNIN 246 + LVA +V L +V ++D G+LL + + I + + E+EM + Sbjct: 190 GVVALVAGSVEGLTPENVHLVDMRGRLLHPDGHQDPVSGLALTHQEIKRNYERELEMRLQ 249 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L +G D V A+L+ QQ V +++V + ++++ S T Sbjct: 250 NMLQRIVGPDRVVVMVSADLDFSQQQSVSTVPYGEAQVVSEQTVREESEGSGTGGGVPGT 309 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + + + + ++E +NY++ T ++ RLS +VVV+ Sbjct: 310 DANLPATYPLAGRPADAGAPTSFVREERTANYQVGTLQQTVIQPPGEVRRLSTSVVVDG- 368 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 + +I +V+AA G N RGD I + M F Sbjct: 369 ------------DLSAARAEQIQGVVTAALGYNPERGDQILVAPMAFDTT---------- 406 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 + + L L+ + L L I G V G+ + P Sbjct: 407 -YQEQLEEDLRRAEALAAERERRQLIYYAALAGGVLLLLIILIIAGVVVGRRLQRAPRPQ 465 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + ++A +++ F + E A+I+ Sbjct: 466 PQPEVEELSPLSVAAAAADPVFFL--------------SDKQRGARELARQKPEEVAQII 511 Query: 547 RKWARS 552 + W Sbjct: 512 KVWLTE 517 >gi|168183269|ref|ZP_02617933.1| flagellar M-ring protein FliF [Clostridium botulinum Bf] gi|237796102|ref|YP_002863654.1| flagellar MS-ring protein [Clostridium botulinum Ba4 str. 657] gi|182673721|gb|EDT85682.1| flagellar M-ring protein FliF [Clostridium botulinum Bf] gi|229262258|gb|ACQ53291.1| flagellar M-ring protein FliF [Clostridium botulinum Ba4 str. 657] Length = 526 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 213/565 (37%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + E G ++ + P D D Sbjct: 461 EDDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|218708823|ref|YP_002416444.1| flagellar MS-ring protein [Vibrio splendidus LGP32] gi|218321842|emb|CAV17815.1| Flagellar M-ring protein [Vibrio splendidus LGP32] Length = 580 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 95/557 (17%), Positives = 207/557 (37%), Gaps = 30/557 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 41 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I++ + G++ISVP+S ++++ GL + N+G ++ + FG++ ++ Sbjct: 100 DTQKIEYSL--EGNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + A+V + +P F + +ASV + + K Sbjct: 157 KERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243 +++ +VA+AVP + +TV D G+LL++ + + + + + Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALRE 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNG--NVVA 334 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + KE N+E++T + + R Sbjct: 335 GIPGALSNQPPADASIPQDVAQMKDGTMMGQGSVHKEATRNFELDTTISHERKQSGTVNR 394 Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 395 QTVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAP 454 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 V + + +ALV +V L+ L A+++L N ++ Sbjct: 455 QVTDIVADVPIWEHQHFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAADDDDQMY 511 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G + G + N + + + ++ Sbjct: 512 GPDGMPIGADGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562 Query: 536 EINEERFAKILRKWARS 552 E A++++ W Sbjct: 563 ANEPELAAQVVKNWVAD 579 >gi|260866399|ref|YP_003232801.1| putative lateral flagellar basal-body M-ring and collar protein [Escherichia coli O111:H- str. 11128] gi|257762755|dbj|BAI34250.1| predicted lateral flagellar basal-body M-ring and collar protein [Escherichia coli O111:H- str. 11128] gi|323178508|gb|EFZ64086.1| flagellar M-ring protein FliF [Escherichia coli 1180] Length = 548 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G F+Q + Sbjct: 76 LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSRQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244 AI HLV+ ++P L V+V+D +G LLT + + I +I+ Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQSGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + A++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPESEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|126738564|ref|ZP_01754269.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6] gi|126720363|gb|EBA17069.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6] Length = 520 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 132/530 (24%), Positives = 206/530 (38%), Gaps = 34/530 (6%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY LE + +L + + + G SI VPS + R+ LA++GLP++ Sbjct: 1 MRLLYAGLESGSAGDVVRSLEQRGTPYEVR--GGSIYVPSDQRDELRLTLASEGLPANGG 58 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 GYEL D ++ FG TS M + RA EGE+ARTI I ARVHI F++ Sbjct: 59 K-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIVGSPHISQARVHIANTGSNPFQRT 117 Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 + ++ +P A AIR L+A+AV L + +V V+D+ G L+ + E Sbjct: 118 VDPTASVSVVPLGSPITPAQANAIRFLIASAVTGLAVDNVAVIDANGALIGSTEAAAAAG 177 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 I + + + A +G N V + DT+ IRE DP+S+V S Sbjct: 178 AG----SDDRSQSIRDRVMRLVEARVGHGNAVVEVSVDTVTDTESIREKRVDPESRVAIS 233 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + A S VTV N+P S NT E+ NYEI+ Sbjct: 234 TDVEERADSSSNQT--GEVTVASNLPDGDA--ASGEGSKNNTSATRERVNYEISETEKEI 289 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 ++RL++AV++N T G + + + + LA + +++SAA G + RGD IT Sbjct: 290 IRGPGAIKRLTVAVLINGTTSTTATGETQFEPRPEEELAALRELISAAVGFDESRGDVIT 349 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL------- 460 + SM+ + SFMD L +I + +L++ + + Sbjct: 350 LKSMELPSIE-PQGTEATASFMDNLYFDTMGIIQVAALALVSLILGLFVVRPILASSGSG 408 Query: 461 ----RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND-----------NIALDSSN 505 + D GG L + + +M D + Sbjct: 409 DSAALPALSSPDPMGDLPGGLPELPAMNTAPNMGDFMMNPDLGSNIALDGEIENEAGQFD 468 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 RL MI +E +ILR W E Sbjct: 469 SLGGMGGLPALGGGMGGGGDNPVDRLREMIGERQEETVQILRGWLEENEE 518 >gi|148380620|ref|YP_001255161.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 3502] gi|153933327|ref|YP_001384906.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 19397] gi|153935162|ref|YP_001388375.1| flagellar MS-ring protein [Clostridium botulinum A str. Hall] gi|148290104|emb|CAL84223.1| flagellar M-ring protein [Clostridium botulinum A str. ATCC 3502] gi|152929371|gb|ABS34871.1| flagellar M-ring protein FliF [Clostridium botulinum A str. ATCC 19397] gi|152931076|gb|ABS36575.1| flagellar M-ring protein FliF [Clostridium botulinum A str. Hall] Length = 526 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 100/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D A D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLEAQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|168180913|ref|ZP_02615577.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916] gi|182668331|gb|EDT80310.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916] Length = 526 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 214/565 (37%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAGKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|295319980|gb|ADG00358.1| fliF; flagellar M-ring protein FliF [Clostridium botulinum F str. 230613] Length = 526 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + +RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|86146136|ref|ZP_01064462.1| flagellar M-ring protein [Vibrio sp. MED222] gi|85836083|gb|EAQ54215.1| flagellar M-ring protein [Vibrio sp. MED222] Length = 580 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 95/557 (17%), Positives = 207/557 (37%), Gaps = 30/557 (5%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 +F + L R ++L I + + L + F+V P L E ++ + L Sbjct: 41 SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I++ + G++ISVP+S ++++ GL + N+G ++ + FG++ ++ Sbjct: 100 DTQKIEYSL--EGNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLE 156 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + + E ++A+ I+ + + A+V + +P F + +ASV + + K Sbjct: 157 KERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216 Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243 +++ +VA+AVP + +TV D G+LL++ + + + + + Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALRE 276 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 I+ L LG N+ + V +L+ + +DP++ RS +D + Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNG--NVVA 334 Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 N P + + KE N+E++T + + R Sbjct: 335 GIPGALSNQPPADASIPQDVAQMKDGTMMGQGSVHKEATRNFELDTTISHERKQSGTVNR 394 Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 +++V + ++ L G S + I +++ G + RGD + + SM F Sbjct: 395 QTVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAP 454 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 V + + +ALV +V L+ L A+++L N ++ Sbjct: 455 QVTDIVADVPIWEHQHFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAADDDDQMY 511 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G + G + N + + + ++ Sbjct: 512 GPDGMPIGVDGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562 Query: 536 EINEERFAKILRKWARS 552 E A++++ W Sbjct: 563 ANEPELAAQVVKNWVAD 579 >gi|255321871|ref|ZP_05363021.1| flagellar M-ring protein FliF [Campylobacter showae RM3277] gi|255300975|gb|EET80242.1| flagellar M-ring protein FliF [Campylobacter showae RM3277] Length = 564 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 115/576 (19%), Positives = 226/576 (39%), Gaps = 28/576 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56 M + Q + +L + L+ A +++ + + +S Y L+ Sbjct: 1 MDFKTAIQQIGQVYHNLSLRQRLVAAGSVVLVVGFLVFLSIHKSSNENYDGYSVLFENTS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D I L + + ++I + G +I VP+S V + RI +A+ G+ G+E+FDK Sbjct: 61 AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDG-KVGFEIFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG T Q++ RALEGE+ARTI+S++ I A V I +P F + P+AS++ Sbjct: 119 -QEFGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETIFTERATPPSASIV 177 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS 232 + K I++LVAAAV NL V ++ G L + + + + + + Sbjct: 178 LNLKDGQSLNLKQITGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237 Query: 233 IVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +H +E I L+ +G D + V + + + + +DP+S + Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGSDKVVAKVTIDFDFARKDSQSETFDPNSVARSEQNVE 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + Q S+ ++ + N+ V + E K +NYEI+ K Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGL--QDGKMKELYSKSSSTTNYEISKKVERVKDQF 355 Query: 352 YKLERLSIAVVVNKGRLTEVLG------RSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 K+ RLS AVVV+ + A LA I+ ++ + G + RGD Sbjct: 356 AKINRLSAAVVVDGKYENKKDEKGNPTSEIAYVPLDKEQLARIDALIRQSIGFDQNRGDE 415 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 +T+++ +F + SF ++ + + L +L +L+ + Sbjct: 416 VTVSNFEFQRQDGQTPASKVQSFFEL---YVVPFLPILKYLFVAILLYVFYKKVITPFMT 472 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 E LS + + + A + + + + Sbjct: 473 KMLEDVKEEEID--LSENEVQLEDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLR---YD 527 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561 ++ +++ E A +L+ +++ + + Sbjct: 528 VLLEKMKLVVQDRSEEIAVLLQDMIKNDSDFSNRKD 563 >gi|261209869|ref|ZP_05924170.1| flagellar M-ring protein FliF [Vibrio sp. RC341] gi|260841055|gb|EEX67580.1| flagellar M-ring protein FliF [Vibrio sp. RC341] Length = 580 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 214/563 (38%), Gaps = 30/563 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I ++ + + L R ++L I + + L + F+V P L E ++ Sbjct: 35 DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + +++ +G++I VP S ++ + GL + +G E+ + FG Sbjct: 94 PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFG 150 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RA 179 ++ +++ + E ++A+ I+ + I ARV + +P F + +ASV + R Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRT 210 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 + +A+ +VA+AVP + VTV D G+LL++ + + Q Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270 Query: 240 E--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 E + I+ L LG+ N+ + V EL+ + V+DP++ RS +D Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330 Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350 + N P + + KE N+E++T Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVHKEATRNFELDTTISHERKQ 388 Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + + R ++AV V G ++ + I +I+ G + RGD + + Sbjct: 389 SGVVNRQTVAVAVKSRSSVNPDTGEVTYTPLSEAEINSIRQILIGTVGYSENRGDLLNVL 448 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 SM F E ++ V + + + +ALV ++ L+ L A+++L N Sbjct: 449 SMPFAEPEVEQIANVPIWENPNFNDWVRWLASALVIIIVVLV---LVRPAMKKLINPTAD 505 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ G + G + + + N + + Sbjct: 506 SDEQMYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLP---------NLHKDEDVLK 556 Query: 530 RLLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579 >gi|322806993|emb|CBZ04563.1| flagellar M-ring protein FliF [Clostridium botulinum H04402 065] Length = 526 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 99/565 (17%), Positives = 214/565 (37%), Gaps = 51/565 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + T + + + + + L I +A + Y L+ ++ +D Sbjct: 1 MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + ++ ++ G++I VP V + R+ + ++ +P ++ + G+E+ DK Sbjct: 61 SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GE+ RTI+ + RVH+V+P+ +F K ASV + Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + ++I LV+ +V N+ +V V+D+ LLT N E K Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +++ + L A G D + + +L+ D + + YDP + V Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + Q + + V+ NM + R E + + E NYEI+ + Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ ++V++ + + + + +A G + +RGDTI + Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + + L LL+ + +++ + ++ Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ E G ++ + P D D Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525 >gi|311085815|gb|ADP65897.1| flagellar MS-ring protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 489 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 101/517 (19%), Positives = 193/517 (37%), Gaps = 47/517 (9%) Query: 52 YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 Y L D I L+E I ++ +D+ I VP V + R+ LA LP S G+ Sbjct: 2 YNHLSNEDSGSIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGF 60 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 EL DK FG++ + ++I RALEGE+ARTI+ I+ + AR+HI F + + Sbjct: 61 ELLDKE-KFGISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKS 119 Query: 172 TASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILG 228 +AS+++ AI HL+++++ +L + ++T++D +GKLL +E + Sbjct: 120 SASIILELQPGRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVND 179 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + I+ I L +G+ N + V A+++ + Q+ + Y P+S + Sbjct: 180 SQFKYTEEIETRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQS 239 Query: 289 RLS-------KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQ 335 S + + + + ++ N + ++ N ++ Sbjct: 240 IRSHQIIIHNEIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNT 299 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 NYE+N T + +++RLS AV+VN + I ++ A Sbjct: 300 VNYELNHSVSHTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREA 355 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G + RGD++ + + F + + S + Sbjct: 356 IGYSKARGDSVHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WF 403 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 AL L + P ++I + Sbjct: 404 CSFALLFLLLKKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQ 450 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 N+ + + ++ ++ N A I+R+W Sbjct: 451 VDLQNNTNTDKLIHKICNISNQNPRTIALIIRQWMSD 487 >gi|294636866|ref|ZP_06715198.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685] gi|291089927|gb|EFE22488.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685] Length = 419 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 169/403 (41%), Gaps = 37/403 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + + L V I + + + +P Y LY + D I L Sbjct: 18 NSIKAILERVRANPKIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQL 77 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 S+ NI +R ++NG+++ VP+ V R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 78 SQMNIPYRFANNGTTLMVPADKVYDLRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 135 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185 ++ RALEGE+ARTI+++ +V+ARVH+ +P F + +P+ASV + Sbjct: 136 QVNYQRALEGELARTIETLGPVVSARVHLALPKPSLFVREQKQPSASVTLTLEPGRALDD 195 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMN 244 AI ++V+++V L G+VTV+D G LLT + R++ L ++ ++ Sbjct: 196 GQINAIVYMVSSSVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRR 255 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL---SKDAQRSETSQ 301 I L LG N + V A+L+ ++ + Y P+ ++ + +S Sbjct: 256 IETILQPMLGSGNVHAQVTAQLDFANREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQL 315 Query: 302 PESAVTVEQNMPHVSDRKVPLP-----------------------------RSLENTDKK 332 N P S ++ Sbjct: 316 NGGVPGALSNEPAPPATGNIDKPRNSTGTNGRNRNESMPSRSSTLSNNGRLASRNENIRR 375 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375 +E +NYE++ T +ERLS+AVVVN + + Sbjct: 376 DETTNYEVDRTIRHTQERAGGIERLSVAVVVNYATTPQGKEVA 418 >gi|312879583|ref|ZP_07739383.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260] gi|310782874|gb|EFQ23272.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260] Length = 524 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 118/569 (20%), Positives = 206/569 (36%), Gaps = 60/569 (10%) Query: 1 MAILDQLLQFFK-SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + Q ++ K SL R + L L + + + + P Y+ L+ LEV D Sbjct: 1 MDKIRQFGEWLKAFWGSLQRWQKLSLVGASALVLCSLVLLVVWAGRPAYEPLFSGLEVED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L E I FR ++I +P V + R+ LA QGLP G+ELFD+ Sbjct: 61 QASIVAYLKEQKIPFRNDPAANAILLPREKVYETRLALAQQGLPKGGV-VGFELFDQ-PK 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G++ F Q++ RALEGE+ARTI I + ARV+IV+P+ F + TASV++R Sbjct: 119 MGMSDFQQKVAYSRALEGELARTIGQIEAVKFARVNIVIPEQRLFLEQQQPSTASVLVRL 178 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----------NEMERNI 226 + + I HLVA +V L+ DVTV+D+ GK+L+ R + Sbjct: 179 KEGQEIGQEQVKGIVHLVARSVEGLNPEDVTVVDTAGKVLSDLIQDDSLIYMSGSDGRAV 238 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 + + + E+E + L G V +L+ D + + P + Sbjct: 239 SSVQRELERQQEQELERKVRLMLEKVFGPGKAVVRVRVDLDFDKKSTSRKEFIPGPNGKG 298 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSI 345 +R ++ + S ++ ++ + +N++I T+ Sbjct: 299 VVRSQQNTEESYVGPGMPPGGAPGTTTNIPGYVVNTGTGGNVEYNRTDTVTNFDITTQES 358 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 + RLS +V+V+ + V+AA G N RGD Sbjct: 359 QQVATPGAIRRLSASVLVDG-------------TLNAQQTQSLKDSVAAAIGFNQLRGDQ 405 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + I M F + L+ ++G + ++ L L Sbjct: 406 LVIQGMKFDTTLADQLLAQMEAEQRQKVILALVGAALLLLIMGAGIFLWIRRRRLAALRR 465 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + ++G+ + G + Sbjct: 466 LMPKEEGDQVPSLKDLLEHPELMTSQGELA------------------------------ 495 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEI 554 + +L N E A +++ W ++ Sbjct: 496 ILEEQLRVYATNNPEEVANLIKNWLAEDL 524 >gi|51597648|ref|YP_071839.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953] gi|51590930|emb|CAH22586.1| putative flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953] Length = 546 Score = 293 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 124/559 (22%), Positives = 232/559 (41%), Gaps = 27/559 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q F LG +IL S + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKFSP-GQLGENTKIILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA-- 179 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD ++ + + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDPRIND---ENIQQE 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P + P ++ + + Q Y + + YKLE Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ L+ L ++R Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLF---GVRPLMKRYSRKGSENLPLAI 462 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + ++ + S +L + + +K L + Sbjct: 463 SSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETK--IAHLQQLA 520 Query: 536 EINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 521 QSETERTAEVIKQWINSNE 539 >gi|301646796|ref|ZP_07246650.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|307136844|ref|ZP_07496200.1| flagellar MS-ring protein [Escherichia coli H736] gi|331640699|ref|ZP_08341846.1| flagellar M-ring protein FliF [Escherichia coli H736] gi|301075031|gb|EFK89837.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1] gi|315616841|gb|EFU97458.1| flagellar M-ring protein FliF [Escherichia coli 3431] gi|331040073|gb|EGI12281.1| flagellar M-ring protein FliF [Escherichia coli H736] Length = 548 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 113/555 (20%), Positives = 218/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|257484920|ref|ZP_05638961.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 447 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 98/425 (23%), Positives = 169/425 (39%), Gaps = 41/425 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P + Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAE 387 + + N+E++ T +L RLS+AVVV+ G + LA Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442 Query: 388 INKIV 392 ++V Sbjct: 443 FTRLV 447 >gi|256376473|ref|YP_003100133.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827] gi|255920776|gb|ACU36287.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827] Length = 559 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 108/565 (19%), Positives = 214/565 (37%), Gaps = 30/565 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + + L+ + +L + + + P Y LY L D + Sbjct: 6 IKASAQGVLSGFKAFTAGQKLVAGATVLAVVGAIAFYFLWASKPTYAPLYTSLASKDASA 65 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L+ A + + ++D G +I VP V R+ ++A LP S S++GY L D+ Sbjct: 66 IVDQLTAAGVTYELTDGGQTIMVPQDQVYPMRLKMSAANLP-SQSDTGYALLDQ-QGVTT 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 + FMQ++ RA+EGE+ TI++I G+ +A VH+ +P F ++PTA+V++ Sbjct: 124 SEFMQQVGYQRAMEGELGSTIKAIDGVTSASVHLAIPQKDVFSDSDSKPTAAVLVGTGAG 183 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237 + I HLV+++V + VTV + GK+L+ + +A Sbjct: 184 KSLSQAQVQTITHLVSSSVEGMSADGVTVAGTDGKVLSTGGADGASASANGDRDDQTKAF 243 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + ++ + L+ +G D+ V A+L+ D + + Y S + Sbjct: 244 EQRLSTSLQQMLSQVVGQDHAVVQVTADLDYDQTETKSQTYTSGDGTAPLSESSTTESYT 303 Query: 298 ETSQPESAVTVEQ------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 +A V N + ++++ N +N+ Sbjct: 304 GDGGQNAAGGVLGSTNGTLNGLEGNTTNGTGGSGNGTYNQEKSTRNNAVNSVIETRQSAP 363 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 K+ +L +AV++++ V +AE+ +I S+A +++ RGDT+ ++SM Sbjct: 364 GKVRKLGVAVLLDQKTAGAVD------------MAEVERIASSAVALDTARGDTLAVSSM 411 Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F V ++ V +G L + + + A RR A Sbjct: 412 PFDTSAAQQGEAAVAAQQAQAQQDELMGMVKTGVAGLGVLALLIMTMIATRRRRKRAAAA 471 Query: 471 KGEVGGKSILSPPPIS----SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K + S + + + + + R + ++ Sbjct: 472 AEAELAKLDELKAQLERTRTSEIEAAIAEKQALVAGNDFPQLSGPKRAEVDPLVVAEQEK 531 Query: 527 SDLRLLHMIEINEERFAKILRKWAR 551 + +++ E A++LR W Sbjct: 532 RMGEIQSLVDEQPEEVARLLRGWLA 556 >gi|187935660|ref|YP_001885041.1| flagellar MS-ring protein [Clostridium botulinum B str. Eklund 17B] gi|187723813|gb|ACD25034.1| flagellar M-ring protein FliF [Clostridium botulinum B str. Eklund 17B] Length = 520 Score = 292 bits (748), Expect = 8e-77, Method: Composition-based stats. Identities = 117/565 (20%), Positives = 227/565 (40%), Gaps = 57/565 (10%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M +L+++ ++ + + + + + I+ + + +S Y L+ L+ D Sbjct: 1 MNKLLEKVKGLWEKFKTQSKKIKIAIFVSCVAVIIAIASTAIYTSSNKYQVLFSNLDPKD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L+E + +I G +I VP+ V + R+ LA + S +SGYEL D +S Sbjct: 61 AQTILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSS 115 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--I 177 FG+T ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + Sbjct: 116 FGMTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLEL 175 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKS 230 + + ++I LV+ + N+ ++ V+D LLTAN + L K Sbjct: 176 KTGSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQ 235 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 S+ + + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + Sbjct: 236 YSLEKNYESKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQT 294 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ ++ + S V+ N+ + +D + N+ ++E+++NYEI Sbjct: 295 IKEVNNTDANGNISESPVDNNISNTTDD---TNNTKSNSSREEQKNNYEIGKTETKVISA 351 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++R++ +VVV+ + I VS A G NS RGD I++ Sbjct: 352 PGEVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLG 398 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 M+F + ++ +F + + + L+ + + +R N Sbjct: 399 MNFDPSLKEDTQNQTDAFNAEAKQKEMQKYMIMGAIALLALIVIIVILVKKRRKNAK--- 455 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL- 529 +D LD D + K Sbjct: 456 ---------------------DEYDDDTQLLDVVVGDEKEPEIFEPIEFETKNEKIHMEN 494 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + E+ +I++ W + Sbjct: 495 EIKKYATDKPEQVVEIIKSWLSEDE 519 >gi|260893875|ref|YP_003239972.1| flagellar M-ring protein FliF [Ammonifex degensii KC4] gi|260866016|gb|ACX53122.1| flagellar M-ring protein FliF [Ammonifex degensii KC4] Length = 498 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 116/561 (20%), Positives = 203/561 (36%), Gaps = 70/561 (12%) Query: 1 MAILDQ--LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 MA+ + ++ S + + + + I + ++ +Y L+ L Sbjct: 1 MALATKPVWERWKSRWESFSPVQRVAVVVAGVALIACCVFLPLYLAQLNYAPLFKGLRPE 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKV 117 D + L E + +R++D G++I VP V K R LAA+G LP + G+ELFDK Sbjct: 61 DAGAVVQKLEEMKVPYRMTDGGTTILVPKDQVYKVRAELAAKGALP--GAGKGFELFDKT 118 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 G+T F +++ RAL+ E+ RTI G+ ARVH+V+P F +P+ASV++ Sbjct: 119 -RLGITDFEEQVNYQRALQEELRRTILQFDGVEDARVHLVLPPRSPFVTEQPKPSASVVL 177 Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSI 233 + K E I LV+ AV L DV V+D+ G++LT + + Sbjct: 178 KLKPLEKLKPEQVEGIVALVSGAVQGLKPEDVRVIDTRGEVLTPPTQGGEVGAVRNQQEL 237 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 V A + E+E + L LG V A+ + +++ + P +V S + Sbjct: 238 VLAFERELERRVKNLLDQILGPGKAAVMVNADFDFSRREV--VTVLPQGQVPVSEHTLTE 295 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 ++ + V+ +N K+E NY++ + + Sbjct: 296 QGAAQAAA------------GVAPTYPAGGAGGQNYSKQETTRNYQVGEQREKVIEVPGR 343 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 L RL+ +VVV+ + +I +V+ A G N +RGD IT+ S F Sbjct: 344 LRRLTASVVVDGN-------------LDPVTMQKIQNLVAGALGYNPQRGDQITVDSFTF 390 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + A + Sbjct: 391 DRTYQRQMEAEMAKAEAKARQEAAKRRLYTLI---------------------------- 422 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + V L+ + + + + Q + Sbjct: 423 -----GAGAGGLLGLVLLLLLRRRLRRAPEAPVVEEVVPVAVTAVPPPSPTDQKFAEVKE 477 Query: 534 MIEINEERFAKILRKWARSEI 554 + E E A+I++ W RSE Sbjct: 478 LAEKRPEEVAEIIKVWLRSEE 498 >gi|147678424|ref|YP_001212639.1| flagellar MS-ring protein [Pelotomaculum thermopropionicum SI] gi|146274521|dbj|BAF60270.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Pelotomaculum thermopropionicum SI] Length = 506 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 111/560 (19%), Positives = 211/560 (37%), Gaps = 62/560 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M+ D +F + SL +T+ +I V ++ P Y L+ LE D Sbjct: 1 MSPGDLAARFRERWQSLSQTQKVISVLVASGALVCLFYLGQLATRPAYAPLFTGLEPKDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L I ++I+D G +I VP V + RI A G+ELFD+ + Sbjct: 61 GVIVDELKALKIPYQIADEGKTIKVPEDKVYEVRIQ-LASSGALGGGGMGFELFDQ-SKL 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G T F Q++ RAL+ E+ RTI + G+ ARVH+V+P F P+A+V ++ Sbjct: 119 GQTDFEQQVGYQRALQEELRRTIVQLEGVEQARVHLVIPQKSVFIGERGTPSAAVALKLK 178 Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232 + + I L+ +V L +V ++D+ G +L+ + + + Sbjct: 179 PAARLKPEQVQGICDLLVGSVEGLKPENVHIIDTEGNVLSDDLKSGEWAVGTKTALEHQK 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + E+E + + L +G + + V A+L+ + QQ V + + S + + Sbjct: 239 ARREYEKELEKRVQQMLTQIMGQNKAVAMVTADLDFNQQQTTSTVSSNPNNLRISEHIVR 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + N+ + + ++E NY++NT Sbjct: 299 ETGGGTEAGGPPG--TDSNLSTYPALQGAGTTN---YSREESTINYQVNTVQETVVKAPG 353 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RLS +VV+N + + ++ +V+AA G + RGD I ++SM Sbjct: 354 TVRRLSASVVLN-------------ETDGPVDVQKVRDVVAAAIGYDQARGDQINVSSMA 400 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ L + AL L+V + L R + ++ Sbjct: 401 FDDSYLKKVEAEMAEAESRARFKERLYLYALSGGALLLVVLSILALLLWRRRAVQRVEE- 459 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + F R +Q++ + + ++ Sbjct: 460 ---------------------------------EPEFVTVREMQAQEERRIREDKQEQIR 486 Query: 533 HMIEINEERFAKILRKWARS 552 M + + A+IL+ W + Sbjct: 487 DMAKERPKDVAEILKVWLKD 506 >gi|326389483|ref|ZP_08211050.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW 200] gi|325994488|gb|EGD52913.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW 200] Length = 506 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 104/561 (18%), Positives = 206/561 (36%), Gaps = 70/561 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + + + L + ++ + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L I ++IS++G++I VP+ + R+ LA +G+P + + NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + L+ EI ++++I G+ A V+IV+PD +F A + Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235 ++ + I V+ +V L +VTV+D+ GK+LTA ++ + Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q +++ ++ L G N LN D + I Y P + + + Sbjct: 241 KVQEDLQNSLQTLLEQMFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ +Q S+ N P V+ + + E NYEIN + Sbjct: 301 LKEKATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+E +S+AVVVN Q +S +I +V+ A G +S +++ + Sbjct: 358 KIESISVAVVVN-------------QNLNNSMKQQIADLVTKAAGGDSLV--KVSVQGIQ 402 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + + + V+ + LV GL + + Sbjct: 403 FNQD---------LLKTMQQQAKVSKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + PI I+ + ++ Sbjct: 454 TAEQEVLATVEPIEP----------------------------IEEIDFSEKDEKKKQIE 485 Query: 533 HMIEINEERFAKILRKWARSE 553 +I+ E +++R W E Sbjct: 486 RLIKEKPELVVQVIRTWLNEE 506 >gi|170021374|ref|YP_001726328.1| flagellar MS-ring protein [Escherichia coli ATCC 8739] gi|169756302|gb|ACA79001.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739] Length = 548 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + FMQ + Sbjct: 76 LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFMQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + V + Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGSRNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|32266110|ref|NP_860142.1| flagellar MS-ring protein [Helicobacter hepaticus ATCC 51449] gi|32262159|gb|AAP77208.1| flagellar basal body M-ring protein FliF [Helicobacter hepaticus ATCC 51449] Length = 570 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 108/573 (18%), Positives = 214/573 (37%), Gaps = 29/573 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-----HYDNLYVKL 55 M + Q + L + + +I+ + +V I F +Y+ L+ L Sbjct: 1 MDLRLIFEQIARVLNKLNKKQRIIILTTFVVLISFLTYLVLFKVETKNEYENYEVLFSNL 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D I L + I ++I + + I VP V + RI L + GLP +S N G+++ Sbjct: 61 SAEDSALILQKLQQDKIPYKIPQD-NIIMVPKDNVYEQRITLGSLGLPKTSKNVGFDILL 119 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + + G T F Q++ + A + E+ARTI+S+ I A V+I MP F + G P+ASV Sbjct: 120 E-SPVGETPFTQDMKYLIAKQNELARTIESLRPIEKAIVNISMPKESLFVQGGHPPSASV 178 Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER------NIL 227 + + + ++HLVAAAV L +V +++ G+LL + Sbjct: 179 KLTVRDNMFLSTEQVIGVKHLVAAAVERLTPENVKIINQEGELLGEEDEAALQGVLAKKA 238 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 QA ++ +E I K L +G ++ V + + + + +D + + Sbjct: 239 AFQRRYQQAAENAMEAKIIKFLQPSVGDG-VQAQVTMDYDFSVRNSTQEEFDQNPVIRGI 297 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 K+ + Q V N+ V K +E + E N EI K + Sbjct: 298 REYEKERKGFRPPQIGGVPGVVSNIGPVQGLK--DDEMMEWEKESEVVQNNEIGKKVSSI 355 Query: 348 THDNYKLERLSIAVVVN--KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRG 403 + L+R+S +V+++ + G + + + + + V A G N RG Sbjct: 356 SEHYGVLKRVSASVMIDGTYEEVVGEDGETRLEYSPRSQEDMDKFLEGVKKAIGYNEARG 415 Query: 404 DTITITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 D + + +M F QL F D + R+ + + L +++ +++ + Sbjct: 416 DQVEVINMPFRNTQLDYRPKDAWEAFSDKVERYLSPFMPLLKYVIVAVILLVFYKKIVAP 475 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + E ++ + Sbjct: 476 FAERMLEVQEEEDDDIESLMQIDDDDDDLNKFSELRKRVEDQLGLSSGLDEDNI------ 529 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ ++I + A + + + E++ Sbjct: 530 KYEVLLEKMRNVISERPQEIASLFQTLIKDELD 562 >gi|118444659|ref|YP_877975.1| flagellar MS-ring protein [Clostridium novyi NT] gi|118135115|gb|ABK62159.1| flagellar M-ring protein FliF [Clostridium novyi NT] Length = 523 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 109/567 (19%), Positives = 214/567 (37%), Gaps = 58/567 (10%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M I ++ L + + + + + + I + F+N+ Y LY ++ +D Sbjct: 1 MDKIKEKFKNLIDKFKELSKGKKIAFSILGVGIISGLIYLIVFLNTTKYAVLYKDMDPND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L+E +++++ + SSI VP V + R+ LA Q +S + GYE+ + +S Sbjct: 61 AQTVMTKLNEKKVEYKVEN--SSIKVPEEKVSELRLELAPQ---LTSGSKGYEILENADS 115 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG+T +E+ ALEGE+A+ I+S+ + A+V +VMP G+F K ASV I Sbjct: 116 FGMTDKERELNYKIALEGELAKNIKSLPEVKDAKVLLVMPQEGNFFKQAENAQASVRIEF 175 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANE--MERNIL 227 + +AI LV +V NL +V ++ D T L + + ++ Sbjct: 176 NEGKSISKEQIKAIVSLVTGSVKNLKKENVKIIGVLNGKTKDLTDDLFSEEDGKDLTSVT 235 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K + ++ E I L G ++AV +L+ D + V+DP++ Sbjct: 236 DKQNKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN----- 289 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + S++ ++ + V+ + + ++ ++ NYE+ T Sbjct: 290 VVRSEEIEKDTEKSKDGKVSA-GPVDNNMSNTYNNQDGNSSSTHEKTTRNYEVGKIEQKT 348 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 K++++S +V +N L V +IN +V+ A + RGD IT Sbjct: 349 VGAPGKVKKISASVTINDENLNPVD------------KDKINSLVAGAISYDENRGDIIT 396 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + F E + + T I + L+ G+ AL R Sbjct: 397 VEGLKFNEINDAKAEEEAKKQAEEQKAKQRTFIYKCIGGAVIALLLIGGIIALIRKRKNK 456 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + I + ++ + S Sbjct: 457 K---------------------EEAEEQIEGIDMLIDDEVEPKEPLKPINFDEENESTHI 495 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ A+I++ W + Sbjct: 496 EKEIKKYATEKPDQVAEIIKAWMAEDE 522 >gi|57506034|ref|ZP_00371957.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195] gi|57015642|gb|EAL52433.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195] Length = 560 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 118/574 (20%), Positives = 230/574 (40%), Gaps = 26/574 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56 M + LLQ + +L R + +++A+ I+V + + F N P Y L Sbjct: 1 MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 S I L + + +R+ + S+I VP V + ++ +A++GL + G+E+FDK Sbjct: 61 PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDN-RVGFEVFDK 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TS +++ RAL+GEIAR I+++ I +A V + +P F + PTASV Sbjct: 119 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 177 Query: 177 IRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSI 233 I + K + ++++VAA+VP L +V + D G L + +L + Sbjct: 178 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 237 Query: 234 VQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + E+E I +LA F G D + +V E + Q+ + +YDP++ V L++ Sbjct: 238 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + + N+ V +++ K + +N EI+ T Sbjct: 298 EKTGRKDPEIQGVPGAVSNIGPVEGL--ANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 355 Query: 353 KLERLSIAVVVNKGR--LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 R+S AV ++ + + G S + L + IV N+ RGD++ + Sbjct: 356 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 415 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++ F + V+ + R I + + + +L+ F + Sbjct: 416 QNLPFYRESIKVESKVKTFY----GRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 471 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + P + N A + + + I Sbjct: 472 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQ---YDVLL 526 Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562 +L ++ E A +L+ +++ + + I Sbjct: 527 EKLRTLVSDKSEEIAALLQNLIQNDSDFSENKDI 560 >gi|238762371|ref|ZP_04623342.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] gi|238699356|gb|EEP92102.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638] Length = 541 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 114/559 (20%), Positives = 225/559 (40%), Gaps = 32/559 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q + LG+ + IL + + + + + S Y L+ E V + Sbjct: 1 MLDKIKQQLPAIR-LGKNQKSILMGAMALLVTGAIIFSLWRGSQGYTALFGSQEHIPVTQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + I V + +G+ARI LAA+G+ +++ +GYEL D+ G Sbjct: 60 VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179 + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF + + + + ++ Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLKTEQVGAIVQLVAGSIPAMKAANVRVVDQHGELLSEAYQANSKGMTNVKSGAELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E +I L++ +GV+N+R +V +L++ + Y R + + Sbjct: 239 YLQSTTEKSIANLLSSVVGVNNYRISVATQLDLSRVEETLERY---GAEPRVSDENIQQE 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 N P R P + + + Q Y + H +KLE Sbjct: 296 NGNEDMAMGIPGSLSNQPSAQPRNTNAPAMM---SRSQAQRKYAYDRDIRHVRHPGFKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AV++NK A L E+ +++ A GI+ +RGD++T+ + F Sbjct: 353 KMTVAVILNKSA-------PALDKWTAEQLNELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + R + +LL G+ L + D K + Sbjct: 406 PIVIEESVIPWWQDATTFRW----AEIAGIGLLSLLFLLFGVRPLMARLSRPDDKHATLA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 P ++ ++ S S + L + Sbjct: 462 MSENADSPNATN------TAGESGTATESRLPASSFKEDDNLPPQGSGLDTKIAHLQQLA 515 Query: 536 EINEERFAKILRKWARSEI 554 + ER A+++++W + Sbjct: 516 QSETERVAEVIKQWINNNE 534 >gi|300817286|ref|ZP_07097504.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] gi|300530262|gb|EFK51324.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1] Length = 548 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 116/555 (20%), Positives = 222/555 (40%), Gaps = 40/555 (7%) Query: 13 SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 R ++A V L + + + + Y +LY + E V++I L Sbjct: 16 RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + +RI I VP + K R+ LAA+G+ + SGYEL DK G + F+Q + Sbjct: 76 LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA--INPSVYKSA 188 R+LEGE+A++I S+ + +ARVH+ + + SF + +ASV++R Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRMHYGAKLNMDQV 194 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244 AI HLV+ ++P L V+V+D G LLT E K I++ IQ + + Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L + +G N+R +V+ +L++ T + Y + R Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P V+ ++ + E + +Y + H + ++RL++ Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A + ++ +++ A GI+++RGD +T++ ++F+ + Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVVP 424 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + D + + + + LL+ F + + + A +++ Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P N D+ S + S + L + + Sbjct: 481 SEPWIAMPEEE------------CKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528 Query: 540 ERFAKILRKWARSEI 554 +R A++LR+W S Sbjct: 529 DRVAEVLRQWITSNE 543 >gi|315638805|ref|ZP_07893977.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21] gi|315481023|gb|EFU71655.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21] Length = 564 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 118/574 (20%), Positives = 230/574 (40%), Gaps = 26/574 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56 M + LLQ + +L R + +++A+ I+V + + F N P Y L Sbjct: 5 MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 64 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 S I L + + +R+ + S+I VP V + ++ +A++GL + G+E+FDK Sbjct: 65 PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDN-RVGFEVFDK 122 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TS +++ RAL+GEIAR I+++ I +A V + +P F + PTASV Sbjct: 123 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 181 Query: 177 IRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSI 233 I + K + ++++VAA+VP L +V + D G L + +L + Sbjct: 182 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 241 Query: 234 VQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + E+E I +LA F G D + +V E + Q+ + +YDP++ V L++ Sbjct: 242 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 301 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + + N+ V +++ K + +N EI+ T Sbjct: 302 EKTGRKDPEIQGVPGAVSNIGPVEGL--ANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 359 Query: 353 KLERLSIAVVVNKGR--LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 R+S AV ++ + + G S + L + IV N+ RGD++ + Sbjct: 360 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 419 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 ++ F + V+ + R I + + + +L+ F + Sbjct: 420 QNLPFYRESIKVESKVKTFY----GRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 475 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + P + N A + + + I Sbjct: 476 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQ---YDVLL 530 Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562 +L ++ E A +L+ +++ + + I Sbjct: 531 EKLRALVSDKSEEIAALLQNLIQNDSDFSENKDI 564 >gi|283784015|ref|YP_003363880.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168] gi|282947469|emb|CBG87016.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168] Length = 554 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 110/572 (19%), Positives = 216/572 (37%), Gaps = 41/572 (7%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I F L R +L + V + + + ++ Y +LY + E Sbjct: 1 MNELIKKLTHSFPAFAFRLDGNRRWMLLAAAAVAATAIIVSLLWNSNHGYVSLYGRQENL 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 V++I L +++RI I VP + K R+ LAA+G+ + +GYEL DK Sbjct: 61 PVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMALAAKGV-QALLPNGYELMDKDE 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASV 175 G + F+Q I R+LEGE+A++I ++ + +ARVH+ + + SF + + V Sbjct: 120 VLGSSQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSFVVSDRPQNSASVVV 179 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSL 231 + AI HLV+ ++P L V+V+D G LLT K Sbjct: 180 RLHYGAKLDMDQVNAIVHLVSGSIPGLKATQVSVVDQAGNLLTDGTGAGEAVAATTRKHD 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 I+Q IQ + ++ L + +G N+R +V+ +L++ Y + R Sbjct: 240 QILQDIQDKTRASVANVLDSLVGPGNYRISVMPDLDLSDIDETREHY---GNEPKVNREE 296 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK---------KEEQSNYEINT 342 N P V+ +V S + E + +Y + Sbjct: 297 NVQDSDTNQIAMGIPGSLSNRPPVAPNQVTNNASATTAESNPPQALSKHSESKRDYSYDR 356 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 + + ++RL +AVV+N+ A + ++ +++ A GI+++R Sbjct: 357 SVQHIQYPGFTVKRLKVAVVLNQEA-------PALKNWTPEQTRQLTDLLNNAAGIDTQR 409 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 GD ++++ + F+ + + + + + + + LL+ + + + Sbjct: 410 GDNLSLSLLRFVPPKTPVEPVIPLWKDESVLAW----ARMIGCGLLALLLLLFVVRPMMK 465 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + + P D + ++ S + S Sbjct: 466 RLTAVRQSLPALEKVAASVPAIEPQFAAAED--------DRKSIELPSFPGDDSLPPQSS 517 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + L + + +R A++LR+W S Sbjct: 518 GLEVKLEFLQKLAMSDTDRVAEVLRQWITSNE 549 >gi|182412248|ref|YP_001817314.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1] gi|177839462|gb|ACB73714.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1] Length = 530 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 121/515 (23%), Positives = 206/515 (40%), Gaps = 16/515 (3%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + L + LG + + L L + + + P Y LY +L D Sbjct: 1 MKKFLQSLLELWKQLGLNQRVSLVVAALAVVAGLITVVLWSRRPDYQLLYARLSEKDAAS 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L NI ++ G+++ VPS V K R+ LA++GLP S G+E+FDK FGL Sbjct: 61 IIGQLQTQNIPHIVTAGGTAVQVPSDQVYKLRMDLASKGLP-SGDGVGFEIFDKGQ-FGL 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181 + F+Q +RA++GE+ARTI + G+ AARV IV P+ + + TASV + Sbjct: 119 SDFVQRTNYLRAVQGELARTIMQLQGVRAARVMIVQPENRLLLTDQSVKSTASVFVDVGG 178 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAI 237 AIRHLVA AV L V V+D+ G +L+ + + Q + Sbjct: 179 KRLETDQVNAIRHLVANAVQGLAPDQVAVVDNRGHVLSEELKQDPTLGTASSQIRYRQQV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + LAA +G N V AE++ + I E +DP+ +V R+ +++D S Sbjct: 239 EDYFAKKVETMLAAVIGPGNAVVRVSAEIDTEAVAITEERFDPEGQVVRTQTVTEDTSSS 298 Query: 298 -ETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 E+ V V N+P + P S +K + YEIN ++ TT + ++ Sbjct: 299 AESRSAGGVVGVSANVPEKNPGTEAARPVSNTEQSRKNRSTTYEINRTTLNTTRNPGSVK 358 Query: 356 RLSIAVVVNKG---RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT----ITI 408 L+ AV V Q + L + ++V A G+ G + +++ Sbjct: 359 NLTAAVFVAPRLAAPAAAGAAPGEPQRRSAEELNALRQLVVNALGLKIPAGQSLDTVVSL 418 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 F + + + + + + + R+ Sbjct: 419 QETPFQSAEEIPAQIAAIEQENRWQGWIEAGSRWIAVVAAAAVFLVFWRMLRRQKPEPVP 478 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 + + ++ P S+ VT L+ + Sbjct: 479 IEVLSLSPEAATRSLPTSNGVTPDLLNELIRQKPA 513 >gi|157147120|ref|YP_001454439.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895] gi|157084325|gb|ABV14003.1| hypothetical protein CKO_02897 [Citrobacter koseri ATCC BAA-895] Length = 540 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 117/557 (21%), Positives = 215/557 (38%), Gaps = 47/557 (8%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 +A V V + + + + Y LY E V+++ L NI +RI+ + I Sbjct: 1 MAIVGGVVLAAAIILSLWNRNQGYVALYGSQEHLPVSQVVDVLGAENIAYRINPDNGQIL 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V S + +AR+ LAA+G+ S+++ GYEL DK G + F+Q + R+LEGE+A++I Sbjct: 61 VSESKLPQARMALAAKGI-SAATPDGYELMDKEEMLGSSQFIQNVRYKRSLEGELAKSIM 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPN 201 ++ + ARVH+ + + SF +++ + + + ++ LVA +VP Sbjct: 120 ALDPVENARVHLGLNESSSFVLTNKPTSSASVMVQLHYGRKLDEQQVASVIQLVAGSVPG 179 Query: 202 LDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 + G V V+D +G LL+ + ++Q I+ + NI L + +G N Sbjct: 180 MQPGAVRVVDQSGNLLSDGIEGPDGGMTSKRMGDDVMQRIREDTTKNITSLLTSLVGPGN 239 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 FR +V +++ + + K R + + N P Sbjct: 240 FRISVAPTVDLSRVEETQERL---GKDPRVSDEQLSQENTTNEMAFGIPGSLSNRPVNPT 296 Query: 318 RKVPLPRSLEN------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + P + N + + +EQ Y + H YKLE+LS+ Sbjct: 297 PQTPANPAEGNPPAENAANAANNTDPRSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLSV 356 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 AVV+N+ A L + ++V +A GI RGD +T+ + F Sbjct: 357 AVVLNQAA-------PALAKITPEQLTSMTRLVESAAGIEKARGDALTLDVLTFTAPADD 409 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ + L+ L+ L ++R D K Sbjct: 410 VMPDLKWWQDPSMQYWGQNGGIGLLALLTLLF---GVRPLVQRFGRRDPITLDGEATKKE 466 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 L P + + + A ++N+D+ S + L + + Sbjct: 467 LEAPDNGVVMNDDEFASLSKAAFNNNEDLLPP--------QSSGLEAKVEFLQLLAQSET 518 Query: 540 ERFAKILRKWARSEIED 556 ER A++L++W S Sbjct: 519 ERVAEVLKQWINSNDRS 535 >gi|186896782|ref|YP_001873894.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+] gi|186699808|gb|ACC90437.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+] Length = 546 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 123/559 (22%), Positives = 231/559 (41%), Gaps = 27/559 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +LD++ Q LG IL S + + + + + +S Y L+ E + + Sbjct: 1 MLDKIKQKLSP-GQLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK + G Sbjct: 60 VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA-- 179 + F+Q + R+LEGE+A+++ ++S + ARVH+ M + SF A +ASV++R Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E NI L + +G +N+R +V +L+M + Y PD ++ + + Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDPRIND---ENIQQE 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S N P + P ++ + + Q Y + + YKLE Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AVV+NK + E+ +++ A GI+ +RGD++TI M F Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 L + + R + L+ L+ L ++R Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLF---GVRPLMKRYSRKGSENLPLAI 462 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 + + ++ + S +L + + +K L + Sbjct: 463 SSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETK--IAHLQQLA 520 Query: 536 EINEERFAKILRKWARSEI 554 + ER A+++++W S Sbjct: 521 QSETERTAEVIKQWINSNE 539 >gi|254299704|ref|ZP_04967153.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] gi|157809299|gb|EDO86469.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e] Length = 532 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 105/517 (20%), Positives = 201/517 (38%), Gaps = 20/517 (3%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +Y L+ E ++ + L I +RI + + V S V +AR+ LAA Sbjct: 28 YMRYDQANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAA 87 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + ++ G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + Sbjct: 88 RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIA 146 Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + + ++ + A+ +LVA +VPNL V+V+D G Sbjct: 147 KSSSFVMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAF 206 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 L+A L + I + ++ N+ LA LG+ NFR +V A +N D + Sbjct: 207 LSARVDLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE 266 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + KV +++ N P P++ T + Sbjct: 267 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASEPQADGGTQRAATTR 321 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + + +L++LS+AVV+N + + L I++I+ + Sbjct: 322 QFAYDRNITQIKRGRGQLKKLSVAVVLNNAVSP-----AKGKPWSPEQLRRIDEILRSGL 376 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+ +RGD + ++S+DF D L + + AL L G L + Sbjct: 377 GIDKQRGDQLIVSSLDFAAPAAAE---PWWKERDTLEQGGWYLTYALAALFGYLALARPM 433 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L L++ S L P A +D ++ + Sbjct: 434 LRMLQQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPP 493 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + L + E ER A+++++W R++ Sbjct: 494 AD---SGVEVLIDHLRSLSEKEPERVAEVVKQWIRND 527 >gi|331269314|ref|YP_004395806.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925] gi|329125864|gb|AEB75809.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925] Length = 524 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 103/567 (18%), Positives = 215/567 (37%), Gaps = 57/567 (10%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M I +Q + + L + + + + ++L I + +N+ Y LY ++ +D Sbjct: 1 MDKIKEQFKKLVEKFKELSKIKKIAFSVLVLGIITGIIYLVISLNTTKYAVLYKDMDPND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L++ I++++ +N SI VP + R+ LA Q ++ + GYE+ D ++ Sbjct: 61 AQTVMAKLADKKIEYKVENN--SIRVPEDKAAELRMELAPQ---LTNGSKGYEILDNGDT 115 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 FG+T +E+ RALEGE+AR I+S+ + A+V +VM G+F K +ASV + Sbjct: 116 FGMTDKERELKYKRALEGELARDIKSLPEVKDAKVLLVMQQEGNFFKQDDPGSASVTLEF 175 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLTA-------NEMERNIL 227 + +AI LV+ +V NL + V V++ + L+ N+ ++ Sbjct: 176 ETGKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVT 235 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K S + ++ E I L G ++AV +++ D + ++DP++ Sbjct: 236 EKQESYKKNLEKEYVKKIMNILTPKYGDG-VKAAVNVDVDFDASEKTSTLWDPNN----- 289 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + S++ ++ + + + + + ++ NYE+ Sbjct: 290 VVRSEETEKDTDNSKGGKTSA-GPVDNNMSNTYNAKDQNGTSTHEKTTKNYEVGKVEQKV 348 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 K++++S +V +N D+ +IN +V+ A + RGD ++ Sbjct: 349 VGAPGKIKKISASVTIN------------DENLSPVDKDKINSLVAGAISYDESRGDIVS 396 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + M F E + + + I V L G+ AL R Sbjct: 397 VEGMKFNEVNEAAAAEEAKKQAEEQKAKQKSFIYKCVGGAVAALAVIAGIVALIRKRRKK 456 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + E + I + + + + Sbjct: 457 NKVDEEEEIEGIDMLIDDNVE--------------------PNEPLKPINFDEENENTHV 496 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 + + E+ +I++ W + Sbjct: 497 EKEIKKYASEKPEQVVEIIKAWMAEDE 523 >gi|213028767|ref|ZP_03343214.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 377 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 99/359 (27%), Positives = 163/359 (45%), Gaps = 29/359 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + +P Y L+ L D I L++ NI +R ++ +I VP+ V + R+ LA Q Sbjct: 15 LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP + G+EL D+ FG++ F +++ RALEGE+ARTI+++ + +ARVH+ MP Sbjct: 75 GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132 Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 F + P+ASV + A+ HLV++AV L G+VT++D +G LLT Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192 Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + R++ L ++ I+ I L+ +G N + V A+L+ ++ E Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252 Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313 Y P+ ++ S+ SE P N P Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + + ++ E SNYE++ T + +ERLS+AVVVN L + Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK 371 >gi|304392498|ref|ZP_07374438.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130] gi|303295128|gb|EFL89488.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130] Length = 535 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 181/556 (32%), Positives = 294/556 (52%), Gaps = 41/556 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + + + + LG R+ I+A + + + +F+ P ++ LYV L D+N Sbjct: 11 TVSQAANRIWANLLQLGGRRLAIMAIAAMATMGTVGLSAWFLAQPTFETLYVGLARDDIN 70 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 RI ALSEA I + +S +G+S+ V + +AR LA +GLP SS SGYELFD + S G Sbjct: 71 RIGPALSEAGIGYDVSSDGTSVLVQAGQAARARSILAERGLPRSSG-SGYELFDNLGSLG 129 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQE+TRVRALEGEIAR+++SI GI ARVHIV PD SF + +ASV+I++ Sbjct: 130 LTSFMQEVTRVRALEGEIARSVRSIEGIQGARVHIVQPDRSSFSARNRQASASVLIQSNG 189 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHE 240 + + A+A+RHLVAAAVP L +G+VTVLDS+G++L + + + +L + + +++ Sbjct: 190 RDIDRVAKAVRHLVAAAVPQLAVGNVTVLDSSGQVLASGDEPASSTADGALGMQRLVENR 249 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + NI + L LG NFR AV A L+ D + E +YDP+S+VERSI++ + +S Sbjct: 250 LSENIARVLTPQLGASNFRVAVHAVLDTDQRTTSETIYDPESRVERSIKVVRTQDTDTSS 309 Query: 301 QPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 Q TVEQ++P + P S ++++EE +NYE+++K I++ + Y + +L+ Sbjct: 310 QGGQTTTVEQDIPEEQPAQANAGPSSNRESERREETTNYEMSSKRISSVRNGYSVSKLTA 369 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +VVVN L L + AA G+++ RGD I +++++F+ Sbjct: 370 SVVVNASALGAE---------PAVRLEALRASTQAAAGVDAGRGDVIDVSAVEFV-TAAD 419 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + T + + +V+ AL FL+ +LV + L + V G+ Sbjct: 420 LAATTSSPLLLQATAQLGSVVKALAFLIALVLVLRFAIKPLVAAAASALSPPQSVEGEGA 479 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 ++ P ++ + + P + A RL +++ + Sbjct: 480 IAGPSNNTRLAGPMGPPPSAA----------------------------DRLAALVDQDS 511 Query: 540 ERFAKILRKWARSEIE 555 ER A++LR W R+ E Sbjct: 512 ERAAEVLRSWVRAGEE 527 >gi|254445735|ref|ZP_05059211.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235] gi|198260043|gb|EDY84351.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235] Length = 525 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 122/503 (24%), Positives = 227/503 (45%), Gaps = 17/503 (3%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 QF + SLG + + L + ++ + + P LY KL + +I L Sbjct: 3 NQFKEIWQSLGANQRISLILASGLVVLAMIGMMIWAAQPDMQLLYGKLSAEEAGKIVAKL 62 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + + F G+SI V +S V + R+ LA +G+P+ S G+ELFD+ SFG++ F+Q Sbjct: 63 EQKGVAFETGSGGNSIYVEASQVHRIRMELATEGIPAGGSGPGFELFDE-GSFGISDFVQ 121 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYK 186 +RA++GE+ARTI G+ +ARV +VMP+ + G + + Sbjct: 122 RTNFLRAVQGELARTISQFDGVESARVMVVMPENRLLASREGQDRPTASVFVDGGGLSTG 181 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIE 242 + +IRHLVA A+ L + DV V+DS G +L+ + + I + +++++ Sbjct: 182 TVNSIRHLVANAIQRLSINDVVVVDSMGTVLSEELRSDGIGSGISNDVIKYRKSLENYFT 241 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--QRSETS 300 + L LG + V ++ + Q E +DP+S+V RS +D+ +R + Sbjct: 242 GKVQSMLDRVLGPNQSEVRVAVDIETASVQTTEKTFDPESQVARSTVSDEDSQVERETSG 301 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYKLERLS 358 + A V N P +L+ + K + N+EIN + +++ + ++RL+ Sbjct: 302 EGAGATGVSSNTPAAGGAGQTAFSTLKEREDKNKTRTENFEINERIVSSVQNPGSIKRLT 361 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITITSMDFL 414 +++V K R+ +V G+ + L E++ IV A GI G D +T+ M F Sbjct: 362 ASLLVAK-RMEDVRGQMNFVDRTPEQLEELSDIVVTALGIQLAPGQTAADFVTVKEMAFA 420 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + N G ++ D + + + + V + V + L+R + + Sbjct: 421 VDPFENHG--ELLKEDATIQRYIELGKNGIGAVLGIGVIIFFMQMLKRYKPEKMSIEVLQ 478 Query: 475 GGKSILSPPPISSAVTTGLMPND 497 + + + ++V T M N+ Sbjct: 479 PDQMLQTRKMEDTSVVTPEMLNE 501 >gi|229544393|ref|ZP_04433451.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1] gi|229324878|gb|EEN90555.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1] Length = 529 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 107/569 (18%), Positives = 205/569 (36%), Gaps = 56/569 (9%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + S + + I S + + ++L +F+ Y LY L+VS Sbjct: 1 MNEKLKQSFQNLKGFWKSRSKKQKTIGISAVALMLVLAAGITYFMTKTKYAPLYSGLDVS 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + I L + + +I+D G +I VP V ++ LAA+GLP + S Y F + Sbjct: 61 ETGSIKDELDQEGVPSKITDGGKTIEVPEDQVDDLKVTLAAKGLPKTGS-IDYSFFSQNA 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMI 177 FG+T + ++ A++ E+ I+ + G+ A+V I +P+ F A+ +ASV++ Sbjct: 120 KFGMTDNEFNVVKLDAMQTELENLIEQMDGVEKAKVMINLPNQSVFVADSQAKASASVVL 179 Query: 178 RAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKSLSI 233 +A+ +LV+ +VPNL ++ +++ + L ++ N + +I Sbjct: 180 TLKPGYELDQNQIKAVYNLVSKSVPNLPTDNIVIMNQNFEYYDLNSSNSSGNAYTQQQAI 239 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292 + I+ +I+ + L+ +G V A+++ ++ E + +P D + I +S Sbjct: 240 KKQIERDIQQQVQTMLSTLMGAGKAVVTVTADIDFTQEKREEDLVEPVDKTNMKGIEISA 299 Query: 293 DAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + +A V V K + NYE+N T Sbjct: 300 KKIQETYQGTGAAAGTPSGSTDSVGSSYVSGSNGNGTYSKTSDTINYEVNRIKRKITESP 359 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GINSRRGD 404 YK+ L I V+V S ++ + ++ IV + N D Sbjct: 360 YKIRDLGIEVMVEPPV--RTKRSSLPASRLKDIKSMLSTIVRTSIDKSSGTRLTNQTVAD 417 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I ++ F N + + + + L++ L +R Sbjct: 418 KIAVSVQPFAANAPEKAKKASIPWW-----------VYAIGGGLLLVIAGLIFFMIRNRR 466 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + E+ ++ P P D A Sbjct: 467 RAASEAEEEMAEETPEKPAPPRIPDVNEEQETDASA------------------------ 502 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + + FAK+LR W E Sbjct: 503 --RRKQLEKMAKEKPDEFAKLLRSWLSEE 529 >gi|89069804|ref|ZP_01157139.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] gi|89044605|gb|EAR50721.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516] Length = 514 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 118/523 (22%), Positives = 211/523 (40%), Gaps = 17/523 (3%) Query: 31 VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMV 90 V ++ + + LY L+ + + AL + + +G I V S+ Sbjct: 2 VVVLAVLFVGRSTPTRQMALLYAGLDAAAAGEVVTALDTRGEVYEVRGSG--IYVESARR 59 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 R+ LA +GLPS + GYEL D ++ FG TS M + RA EGE+ARTIQS G+ Sbjct: 60 DLLRMTLAGEGLPSGGAQ-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIQSSPGVR 118 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 A RVH+ +P F++ G A + A A+A RHLVA+AV L DV V+ Sbjct: 119 AVRVHVSVPANRGFQREGQPAAAVTVTSAGGGLSAAQAKAFRHLVASAVTGLAPDDVAVI 178 Query: 211 DSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 D +G + + + + + + + L A +G N + E +T Sbjct: 179 DESGLV------AAADDSSAPAAQGERERLMRERLQRLLEARVGHGNAVVELNIETETET 232 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 +QIRE +DP+ +V + +S+ ++ + AVTV N+P S Sbjct: 233 EQIRERQFDPEGRVAIAEDVSERSESASGGT--GAVTVASNLPDGDA---AGGGSESQAS 287 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 + + +NYE++ + R+++AV++N + G + + LA + Sbjct: 288 ETRQLTNYEVSQVEREVLRAPGAVRRITVAVLINDPVEVD-SGVETATPRSEEELAVLRD 346 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V++A G + RGD IT+ SM F + + + V+ ++ V V L Sbjct: 347 LVASAVGFDEARGDVITLRSMPFEPPAVAGTEALDVA-APEPPLDVMWLVQLAVMAVVAL 405 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 ++ + + + + P L + S F Sbjct: 406 VLGLFVIRPILTGARPAALPERGPPPALTMEPSARGEPGLPALRETQAGEVAMSQLPTFD 465 Query: 511 HSRNLQSRI-NSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++ + RL +++ ++ +IL+ W Sbjct: 466 MAEFDRAPPQEDLSTLDPVSRLRRLMDERQDETLQILQSWMEE 508 >gi|167725912|ref|ZP_02409148.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98] gi|167905072|ref|ZP_02492277.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177] gi|125657201|gb|ABN48689.1| flagella biosynthesis/type III secretory pathway lipoprotein [Burkholderia pseudomallei] Length = 531 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 106/517 (20%), Positives = 201/517 (38%), Gaps = 20/517 (3%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +Y L+ E ++ + L I +RI + + V S V +AR+ LAA Sbjct: 27 YMRYDQANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAA 86 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + ++ G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + Sbjct: 87 RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIA 145 Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + + ++ + A+ +LVA +VPNL V+V+D G Sbjct: 146 KSSSFVMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAF 205 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 L+A L + I + ++ N+ LA LG+ NFR +V A +N D + Sbjct: 206 LSARVDLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE 265 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + KV +++ N P P++ T + Sbjct: 266 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASEPQADGGTQRAATTR 320 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + + +LE+LS+AVV+N + + L I++I+ + Sbjct: 321 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----AKGKPWSPEQLRRIDEILRSGL 375 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+ +RGD + ++S+DF D L + + AL L G L + Sbjct: 376 GIDKQRGDQLIVSSLDFAAPAAAE---PWWKERDTLEQGGWYLTYALAALFGYLALARPM 432 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L L++ S L P A +D ++ + Sbjct: 433 LRMLQQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPP 492 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + L + E ER A+++++W R++ Sbjct: 493 AD---SGVEVLIDHLRSLSEKEPERVAEVVKQWIRND 526 >gi|221639466|ref|YP_002525728.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131] gi|221160247|gb|ACM01227.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131] Length = 561 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 116/566 (20%), Positives = 218/566 (38%), Gaps = 33/566 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + +L + R + A +IL +L +A + P LY L ++ R+ Sbjct: 12 MRGMLDQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 71 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L+ I I + ++VP + +AR+ LAAQGLP G L + G + Sbjct: 72 IDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLP-QGLPDGNALLSDLP-MGTS 129 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 130 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 189 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239 EAI +LV+++VP + DVTV+D G+LL+ + + + L ++ Sbjct: 190 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 249 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I L G N V +++ Q+IRE DPD + + + + Sbjct: 250 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 307 Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 Q N P + + + N+E++ K T Sbjct: 308 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLPAT 367 Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++ R+S AVVV ++ A++ ++ +A G ++ RGD +TIT Sbjct: 368 ARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 427 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + FL+ + + A + L +V + + + Sbjct: 428 AQPFLDTVVPEASG------WSAEPWLADLARQGFLLAALAVVALGVVRPIL-----NRV 476 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 L + V G +D A + Q + + +R ++ L Sbjct: 477 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 532 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 + ++E +E R A +R+ +E++ Sbjct: 533 VIRKLVEEDEGRIATTIRQMIAAELD 558 >gi|126442789|ref|YP_001061229.1| flagellar MS-ring protein [Burkholderia pseudomallei 668] gi|134280829|ref|ZP_01767539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|254182909|ref|ZP_04889502.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] gi|126222280|gb|ABN85785.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668] gi|134247851|gb|EBA47935.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305] gi|184213443|gb|EDU10486.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655] Length = 532 Score = 289 bits (739), Expect = 8e-76, Method: Composition-based stats. Identities = 106/517 (20%), Positives = 201/517 (38%), Gaps = 20/517 (3%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +Y L+ E ++ + L I +RI + + V S V +AR+ LAA Sbjct: 28 YMRYDQANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAA 87 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + ++ G E D+ + G + F+Q++ R LE E+A++I ++ + ARVH+ + Sbjct: 88 RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIA 146 Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + + ++ + A+ +LVA +VPNL V+V+D G Sbjct: 147 KSSSFVMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAF 206 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 L+A L + I + ++ N+ LA LG+ NFR +V A +N D + Sbjct: 207 LSARVDLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE 266 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + KV +++ N P P++ T + Sbjct: 267 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASEPQADGGTQRAATTR 321 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + + +LE+LS+AVV+N + + L I++I+ + Sbjct: 322 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----AKGKPWSPEQLRRIDEILRSGL 376 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+ +RGD + ++S+DF D L + + AL L G L + Sbjct: 377 GIDKQRGDQLIVSSLDFAAPAAAE---PWWKERDTLEQGGWYLTYALAALFGYLALARPM 433 Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516 L L++ S L P A +D ++ + Sbjct: 434 LRMLQQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPP 493 Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + L + E ER A+++++W R++ Sbjct: 494 AD---SGVEVLIDHLRSLSEKEPERVAEVVKQWIRND 527 >gi|77463624|ref|YP_353128.1| flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1] gi|77388042|gb|ABA79227.1| Flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1] Length = 570 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 115/566 (20%), Positives = 219/566 (38%), Gaps = 33/566 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + +++ + R + A +IL +L +A + P LY L ++ R+ Sbjct: 21 MRGMVEQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 80 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L+ I I + ++VP + +AR+ LAAQGLP G L + G + Sbjct: 81 IDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLP-QGLPDGNALLSDLP-MGTS 138 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 198 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239 EAI +LV+++VP + DVTV+D G+LL+ + + + L ++ Sbjct: 199 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 258 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I L G N V +++ Q+IRE DPD + + + + Sbjct: 259 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 316 Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 Q N P + + + N+E++ K T Sbjct: 317 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKVETTLPAT 376 Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++ R+S AVVV ++ A++ ++ +A G ++ RGD +TIT Sbjct: 377 ARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 436 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + FL+ + + A + L +V + + + Sbjct: 437 AQPFLDTVVPEASG------WSAEPWLADLARQGFLLAALAVVALGVVRPIL-----NRV 485 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 L + V G +D A + Q + + +R ++ L Sbjct: 486 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 541 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 + ++E +E R A +R+ +E++ Sbjct: 542 VIRKLVEEDEGRIATTIRQMIAAELD 567 >gi|167040330|ref|YP_001663315.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514] gi|300914414|ref|ZP_07131730.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561] gi|307724350|ref|YP_003904101.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513] gi|166854570|gb|ABY92979.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514] gi|300889349|gb|EFK84495.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561] gi|307581411|gb|ADN54810.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513] Length = 503 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 206/561 (36%), Gaps = 73/561 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + + + L + ++ + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L I ++IS++G++I VP+ + R+ LA +G+P + + NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + L+ EI ++++I G+ A V+IV+PD +F A + Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ 235 ++ + I V+ +V L +VTV+D+ GK+LTA + ++ + Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFTLQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q +++ ++ L G N LN D + I Y P + + + Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ +Q S+ N P V+ + + E NYEIN + Sbjct: 301 LKEKATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+E +SIAVVVN Q +S +I +V+ A G +S +++ M Sbjct: 358 KIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAGGDSLV--QVSVQGMQ 402 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + + + V+ + LV GL + + Sbjct: 403 FNQD---------LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + P I+ + ++ Sbjct: 454 TAEQEVLATVEPTYV-------------------------------IDFSDKDEKKKQIE 482 Query: 533 HMIEINEERFAKILRKWARSE 553 +I+ + +I+R W E Sbjct: 483 KLIKEKPDIVVQIIRTWLNEE 503 >gi|15895431|ref|NP_348780.1| flagellar MS-ring protein [Clostridium acetobutylicum ATCC 824] gi|15025155|gb|AAK80120.1|AE007716_9 Flagellar basal body M-ring protein FliF [Clostridium acetobutylicum ATCC 824] gi|325509577|gb|ADZ21213.1| flagellar MS-ring protein [Clostridium acetobutylicum EA 2018] Length = 544 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 104/573 (18%), Positives = 210/573 (36%), Gaps = 54/573 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L+ L + + + ++ +++ I + Y L+ KL+ SD Sbjct: 4 LLESLKNLRNKWGEISKRKKIVFLIIVVAIIASLVVFLVSTTRTKYAVLFSKLDSSDAAT 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFG 121 + L I + + ++I VP++ V K R+ A ++G+ELFD N FG Sbjct: 64 VISKLDSDKIAHKEDSSTNTIYVPAADVDKLRLQYATN---LKGGSTGFELFDNSANKFG 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T + RAL+GE+ RTI++ I ARVH+VM + +F K +ASV ++ Sbjct: 121 TTDSEFNVEYQRALQGELERTIKNFDEISDARVHLVMSEDSAFVKDSTPASASVTVKMKA 180 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----------ANEMERNILGK 229 +AI LV+ +V NL +V V+D LL+ + + Sbjct: 181 GETLSKDQVKAIISLVSGSVKNLPKENVQVVDDKMALLSKDLYNSKGKDDSSDTTDSAEN 240 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-----PDSKV 284 + ++ E+E +L + G + + A+LN D Q+ Y P+ Sbjct: 241 RNKMESNVESELEKKALDSLESIYGKGKVKVKINADLNFDAQETNSQTYYDNKGNPNDPK 300 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 +I + + + ++ + N + + + S + K+ +NY++++++ Sbjct: 301 NPTIVSQHSQESTNSQPQSTSSSPLDN--NTNSNTIANNNSNSTSSSKDVTTNYDVSSET 358 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 T + RL+I+V+V+ + + +VS A G N +RGD Sbjct: 359 NKTVKAPGDVRRLTISVIVDGK-------------INGDTQSTLTNVVSNAVGYNQQRGD 405 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALR 461 TI++ + F + D ++ + A+ V L + + +R Sbjct: 406 TISVEGLPFDNTAETEAKKALKEMQDAQNAANKQKMYMAIAIGAGVLALAIITFVVIMIR 465 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 R + N ++ + + + + Sbjct: 466 RRKQ---------------AADEEEFDEDLDSTQNLDVVVGDEIKKSKTKFAPIDFEGEE 510 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + E+ I++ W +E Sbjct: 511 DEQTHIEKEIKKYASTKPEQVVDIVKAWLTNEE 543 >gi|254478876|ref|ZP_05092240.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM 12653] gi|214035189|gb|EEB75899.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM 12653] Length = 506 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 101/561 (18%), Positives = 197/561 (35%), Gaps = 67/561 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +I + Q + + + L + ++ + + N P+Y LY L + D Sbjct: 4 SIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L + +++SDNG++I VP+ + R+ LA +G+P + + NS Sbjct: 64 IVVEKLKSEFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + ++ EI ++++I G+ A V+IV+PD +F A + Sbjct: 121 STTDQERRQKYLYFVQNEIQNSLKTIEGVQDAVVNIVVPDQNAFVLSNTTNQATAAVMLT 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235 ++ + I V+ +V L +VTV+DSTGK+LT ++ + Sbjct: 181 LKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q +++ ++ L G N LN D + I Y P + + + Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ +Q S P + + DK E NYEIN Sbjct: 301 LKEKATGTQNGSPTGTASTTPPGGGALSTQSNNTSSYDKTETTINYEINQIKTTLVEAQG 360 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+E +S+AVVVNK S +I +V+ A G G+ + ++ Sbjct: 361 KIESISVAVVVNK-------------PLNASMQQQIADLVANAAG-----GNNVKVSVQG 402 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 NQ + + I A + + G L+ + R+ + + Sbjct: 403 IPFNQDLLKAMQAQKKVAQGMPLYLWGIIAALAVGGGLVAFLMIRR--RKTKEVIPPAEE 460 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 EV + + + + ++ Sbjct: 461 EVLATAEPVEEIVITE-----------------------------------KDEKKKQIE 485 Query: 533 HMIEINEERFAKILRKWARSE 553 +I + +++R W E Sbjct: 486 KLIREKPDIVVQLIRTWLNEE 506 >gi|83589623|ref|YP_429632.1| flagellar MS-ring protein [Moorella thermoacetica ATCC 39073] gi|83572537|gb|ABC19089.1| flagellar M-ring protein FliF [Moorella thermoacetica ATCC 39073] Length = 524 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 115/549 (20%), Positives = 213/549 (38%), Gaps = 45/549 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + D + L R L +V L ++ ++ P Y L+ ++ D Sbjct: 1 MKVKDIFGKAKSFWQGLTPGRRSALVAVTLAALLAAGFLVQWLVRPQYAPLFTNMQQQDA 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 ++ L E + +R++ +G++I VP + + R+ LA+ G+ ++ G+ELFD+ Sbjct: 61 AAVTAKLKEMKVPYRLTGDGTTIEVPKDQIYQLRLDLASAGVLNNG--QGFELFDQN-KL 117 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+T F + + RAL+ E+ RTI ++ + ARVH+V+P F + P+A+V+++ Sbjct: 118 GMTDFERNLDYQRALQEELRRTIVTLDEVEDARVHLVIPQPSVFLQQQQPPSAAVVLKLK 177 Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL------GKSLS 232 + + I L+AA+VP L + ++ V+D G +L+ + + Sbjct: 178 PLARLKPEQVKGIMELIAASVPGLKLENIRVIDMYGNVLSDGVADSANAPLSQKQQTQME 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 I + + ++E + L LG + V A+LN D Q+I + + + S+ Sbjct: 238 IKRQFEKDLEQRLQSMLTQILGPGKAVAMVTADLNFDQQEINQTTWGKQGAL-----RSE 292 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + + A V + + + N + + NYE++ T Sbjct: 293 EIKTEQGTSNGGAGGVAGTAGNNGPGYPAVNPANGNYNTSDTVHNYELDKTDTHTIVAPG 352 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++ RLS AV VN + +I +IVSAA G RGD IT+TS+ Sbjct: 353 QVRRLSTAVAVNG-------------PVNAALNNQIQQIVSAAVGYQPARGDQITVTSLA 399 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + R ++ V LV L+ L + LRR Sbjct: 400 FDNSLQQQMAADMAAQQQRQQRLRQYLLWGGVGLVSLALLVTLIVLILRRRRQ------- 452 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 L + +L+ + K +L Sbjct: 453 ---------AALEEQMAAAALPAGVPVEPLVVEPVEPVEPADLEKQRQEAQRKAKLEQLQ 503 Query: 533 HMIEINEER 541 +I E Sbjct: 504 EIIRQRPED 512 >gi|238752878|ref|ZP_04614343.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] gi|238708917|gb|EEQ01170.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380] Length = 541 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 112/562 (19%), Positives = 229/562 (40%), Gaps = 32/562 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L+++ Q S T + + +L + + + + +S Y L+ E V + Sbjct: 1 MLEKIKQKLSS-TKMDNNQKNLLMGAAAILVTGAIIFSLWRSSQGYTALFGSQENIPVAQ 59 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L + I +RI+ + + V + +GKARI LAA+G+ +++ GYEL DK G Sbjct: 60 MVEVLDQEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPVGYELMDKETMLGS 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179 + F+Q + R+LEGE+A++I +++ + ARVH+ M + SF + + + + ++ Sbjct: 119 SQFIQSVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRAESSASVVLRLKY 178 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235 + AI LVA ++P + +V V+D G+LL+ AN + + Sbjct: 179 GQALKPEQVGAIVQLVAGSMPGIKAANVRVVDQHGELLSEAYQANSSGMPSVKSGADLAH 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 +Q E +I L++ +G +N+R +V +L++ + Y P+ R + + Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRIEETLERYGPEP---RISDENIQQE 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + N P + P ++ + + Q Y + H +KL+ Sbjct: 296 NNNDDMAMGVPGSLSNQPVAQPGNMTAPTAV---SRSQAQRKYTYDRDIRHVRHPGFKLD 352 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 ++++AV++NK A + LAE+ +++ A GI+ +RGD++T+ + F Sbjct: 353 KMTVAVILNKSA-------PALENWAPEQLAELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + R + + +LL G+ L + D + Sbjct: 406 PTVMEESVIPWWQDPTTFRW----AEIIGIGLLSLLFLLFGVRPLMKRLARRDQQLVNSA 461 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 I T + S S + + L + Sbjct: 462 SAEESENAGIIETATDSSTSLEQTLSGS------SFQESDNLPPQGSGLETKISHLQKLA 515 Query: 536 EINEERFAKILRKWARSEIEDR 557 + ER A+++++W + + Sbjct: 516 QSETERVAEVIKQWINNNERTK 537 >gi|153951308|ref|YP_001398635.1| flagellar MS-ring protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938754|gb|ABS43495.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. doylei 269.97] Length = 560 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 112/573 (19%), Positives = 221/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLYQIGQLYQNLTRKQRIVIATSIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP + + R+ +A++G S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQIYRQRMFIASEGFIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNIKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV A ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGRYQDVVDENGDVKSEYVPLTKEELASVESIVKNAINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + +S + Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAVKKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|325526932|gb|EGD04395.1| flagellar MS-ring protein [Burkholderia sp. TJI49] Length = 367 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 92/321 (28%), Positives = 149/321 (46%), Gaps = 14/321 (4%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VPS+ V + R+ LAA G Sbjct: 49 WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPSNQVHETRLKLAAMG 108 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RTI+SI+ + ARVH+ +P Sbjct: 109 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPKP 166 Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 F + P+ASV + +AI +V++ VP++ +VT++D G LLT Sbjct: 167 SVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMSAKNVTIVDQDGNLLTQ 226 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L VQ ++ + I+ LA G N RS V A+++ + Y Sbjct: 227 PASASGLDASQLKYVQQVEQNTQKRIDAILAPIFGAGNARSQVSADIDFSRLEQTSENYG 286 Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLENT 329 P+ ++S S+ S S N P P++ + Sbjct: 287 PNGSPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPVS 346 Query: 330 DKKEEQSNYEINTKSIATTHD 350 D+K++ +NYE++ Sbjct: 347 DRKDQTTNYELDKTIRHLEQP 367 >gi|119385376|ref|YP_916432.1| flagellar MS-ring protein [Paracoccus denitrificans PD1222] gi|119375143|gb|ABL70736.1| flagellar M-ring protein FliF [Paracoccus denitrificans PD1222] Length = 526 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 125/549 (22%), Positives = 225/549 (40%), Gaps = 29/549 (5%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 LL+ + +LA+ L + + P LY L+ + A Sbjct: 5 LLKLQDYWRDRSTKQRAMLAAAFLFTFAAIAGLSWMASRPGMALLYSGLDPQQSGAVMAA 64 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 + ++ + + I G SI V S + R+ LA +GLPS+ SGYE+ D ++ FG TS M Sbjct: 65 VEKSGVPYEIR--GDSIWVAESRRDELRMTLAGEGLPSAGG-SGYEILDGMSGFGTTSQM 121 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI ++ + AARVH+ +P +R+ + + P Sbjct: 122 FDAAYWRAKEGELARTILALPNVKAARVHLAVPQGRGYRREAEATASVTLTTDGTPISRN 181 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+A++ LV++ VP + V V+DS ++++ E + + E++ N+ Sbjct: 182 QAKALKFLVSSGVPGMTADRVAVIDSERGVISSGEDFDG---------EDREAEMKRNVE 232 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + LAA +G N + ++ +++ + E +DP + S + A +S +Q + AV Sbjct: 233 RILAAHVGHGNAIVELHLDVVNESELLTEQRFDPQERALISQESEESADQSSNAQ-QGAV 291 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 T N+P D +S + + ++SN+E++ + T RL++AV+VN Sbjct: 292 TAASNLPEGQD--SAGDQSRSSRSETRQRSNFEVSKITREVTRQPGATRRLTVAVLVNGV 349 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 TE G + + ++ L I ++V++A G + RGD IT+ S+ F + Sbjct: 350 ARTEANGEATLVPREETELQAIRELVASAVGFDEGRGDAITVKSLPFASLSQAGTLASAG 409 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F+ L + + + L LR L A PP Sbjct: 410 GFLSRLDLN-----GLIRIALVGFFALALAAFLLRPLLRSKPAGSPGQAMLDRPERPPAL 464 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + T P +A D RL +++ ++ +IL Sbjct: 465 AGARTEGAPAPAVANVVPEIDFAPA---------GTDGSDPVGRLKELMKSRKDESLQIL 515 Query: 547 RKWARSEIE 555 W + Sbjct: 516 SGWIEKRED 524 >gi|117624078|ref|YP_852991.1| flagellar M-ring protein [Escherichia coli APEC O1] gi|115513202|gb|ABJ01277.1| Flagellar M-ring protein [Escherichia coli APEC O1] Length = 333 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 8/334 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294 + I+ I L+ +G N + V A+L+ +++ E Y P+ + S+ ++ Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 ++S + P N P ++ S ++ Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISHASGKS 332 >gi|325288778|ref|YP_004264959.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM 8271] gi|324964179|gb|ADY54958.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM 8271] Length = 534 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 109/557 (19%), Positives = 220/557 (39%), Gaps = 32/557 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ + + L + + +IL + LV + + ++P Y L+ KL ++ Sbjct: 4 SLAEIIKSVRGFWEKLSKPQRVILIAAPLVVLTALTILIVWASTPSYAVLFSKLSSTEAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L + N +++ ++G++I VP S + + R+ LA GLP S+ S +E ++V G Sbjct: 64 AITTKLKDLNYSYKLEESGATIQVPESQLAQIRLDLANAGLPQKSTFS-FENLNEV-HLG 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179 T +++ V L+ E+ TIQ++ GI ARVHIV+P+ F + TA+V ++ Sbjct: 122 ETDKDRQLRYVLGLQNELETTIQTMDGIEYARVHIVIPEQSLFTEKQTESTAAVTVKKNP 181 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQA 236 AI +L+ +V L + VT++D+ G +L+ + + L + Q+ Sbjct: 182 GTELSADQVRAIANLLVYSVEGLQIEKVTIVDTNGNVLSDELGKDKTNRMSVTDLQLQQS 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296 +++ I+ ++ L G A LN D Q+I + + R + Sbjct: 242 VENNIQKSVQTMLDKAFGAGKTIVRTNAALNFDQQKITSQTH---TDGAIESRQETSERV 298 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 S+ E N+P + ++ ++K NY+ N T +++R Sbjct: 299 SDGQTTGGVPGTETNIPTYPADEQTDQGTI--SEKYTSTENYQPNVVQEETVVSPGQIKR 356 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 L+I+V+ + + L+ I IV++A G++ RGD I + + F + Sbjct: 357 LTISVMADTDSI------------TAQQLSNIEAIVASAAGVDQNRGDVIQVAGLPFDKT 404 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 ++ A ++ V L + + + LR E Sbjct: 405 TTLQEQAEA-----EIAERNAKILQYAEIGVAVLAILLVAVILLRNRRARRRMSGEEQVL 459 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + ++ ++ + A + I I ++ + Sbjct: 460 ATAEDMTLLTVEEAERMLADQLDAERQAELRIAKKKVKSPDEIE---REKIRKEVEKYSN 516 Query: 537 INEERFAKILRKWARSE 553 N A+++R W E Sbjct: 517 ENPSEVARLVRTWLAEE 533 >gi|332558480|ref|ZP_08412802.1| FliF [Rhodobacter sphaeroides WS8N] gi|2494549|sp|Q53151|FLIF_RHOSH RecName: Full=Flagellar M-ring protein gi|1419203|emb|CAA67251.1| FliF protein [Rhodobacter sphaeroides] gi|332276192|gb|EGJ21507.1| FliF [Rhodobacter sphaeroides WS8N] Length = 570 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 116/566 (20%), Positives = 218/566 (38%), Gaps = 33/566 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + +L + R + A +IL +L +A + P LY L ++ R+ Sbjct: 21 MRGMLDQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 80 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L+ I I + ++VP + +AR+ LAAQGLP G L + G + Sbjct: 81 IDSLTGGGIAAVIDERTGEVAVPGAEYHRARMLLAAQGLPQ-GLPDGNALLSDLP-MGTS 138 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 198 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239 EAI +LV+++VP + DVTV+D G+LL+ + + + L ++ Sbjct: 199 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 258 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I L G N V +++ Q+IRE DPD + + + + Sbjct: 259 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 316 Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 Q N P + + + N+E++ K T Sbjct: 317 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLPAT 376 Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++ R+S AVVV ++ A++ ++ +A G ++ RGD +TIT Sbjct: 377 ARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 436 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + FL+ + + A + L +V + + + Sbjct: 437 AQPFLDTVVPEASG------WSAEPWVADLARQGFLLAALAVVALGVVRPIL-----NRV 485 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 L + V G +D A + Q + + +R ++ L Sbjct: 486 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 541 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 + ++E +E R A +R+ +E++ Sbjct: 542 VIRKLVEEDEGRIATTIRQMIAAELD 567 >gi|219670159|ref|YP_002460594.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2] gi|219540419|gb|ACL22158.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2] Length = 537 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 111/561 (19%), Positives = 212/561 (37%), Gaps = 33/561 (5%) Query: 1 MAI--LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + L R + +I + L + ++ ++ ++P Y ++ +L Sbjct: 1 MNFSWAEIKQSILGFWGKLSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDI 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I+ L E + +++ NGS+I VP R+ LA GLP S S E +K Sbjct: 61 QAGEITSELDELKVKYKLGSNGSAILVPEKEAAGVRLKLANSGLPKGSEFSWSESLNKT- 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 G T + + L+ E+ T++++S + ARVH+ +P+ F + TA+V + Sbjct: 120 RVGETESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLT 179 Query: 179 A--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLS 232 + I +L+AA+V L + DVT+LDS G L+ + + + Sbjct: 180 LKEGSSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLNEDNQPGKMTATQIQ 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + Q + ++ L G A LN D + + P S + S Sbjct: 240 LKQLTEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGSVLSESHTT-- 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + TS +A V+ N+P +++K + N++++T Sbjct: 298 -ENTTNTSPGGTAPGVDTNVPGYLA--PDGTWITSSSEKTSDTLNHQVDTTQEQRIKSPG 354 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RLS++V++ S +ID + +I IV++A GI+ RGD I + ++ Sbjct: 355 DIARLSVSVLL--------DADSISADQIDDQIEKIEAIVASAAGIDRERGDEIQVAALP 406 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + T I V + L+ F+ R DA+ Sbjct: 407 FDKTGALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFR--MRSKRKQDAESL 462 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E+G P + + + A Q + +Q + + + Sbjct: 463 ELGQALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQ-------KIKESVD 515 Query: 533 HMIEINEERFAKILRKWARSE 553 ++ N + A++++ W E Sbjct: 516 IYVQNNPDEVARLVKTWLAEE 536 >gi|46204512|ref|ZP_00209445.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 435 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 158/435 (36%), Positives = 244/435 (56%), Gaps = 9/435 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M +Q + + + LG R++ L V L+ + ++++ P + LY L DV Sbjct: 1 MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQETLYTGLSREDV 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +RI L + I F +S +G+++ V +AR+ LA +GLP SS SGYELF+ + S Sbjct: 61 SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+ +ASV++R Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRREQQPASASVVVRTE 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239 A+AIR LVA+A+P + VTV+ S G +L A + GK ++ +++ Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 E++ NI + LA +LGV NF +V +LN D E +Y+PD +VERS+R ++ + ++ Sbjct: 240 EMQDNIRRTLAPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRENENAQN 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + ++N+P R +S + KKE+ +NYEI+ K+I T D Y + RLS+ Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTIQTVSDGYAIRRLSV 359 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKI------VSAATGINSRRGDTITITSMDF 413 AV+VN+ RLT + G D+ ID +AEI I RGD I + ++ F Sbjct: 360 AVLVNRSRLTAMAG-PDDKAGIDKQIAEIEXIGSGLPXPRPRXLPARERGDIIKVAAVGF 418 Query: 414 LENQLFNSGTVQVSF 428 + + +S Sbjct: 419 INDGQPLEPVPPLSL 433 >gi|289578434|ref|YP_003477061.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9] gi|289528147|gb|ADD02499.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9] Length = 503 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 104/561 (18%), Positives = 205/561 (36%), Gaps = 73/561 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + + + L + ++ + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKF---DKKQKMQLGVIAILLFIGVSLLVYIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L + ++IS++G +I VP+ + R+ LA +G+P + + NS Sbjct: 64 VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEGGFSFQDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + L+ EI ++++I G+ A V+IV+PD +F A + Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ 235 ++ + I V+ +V L +VTV+D+ GK+LTA + ++ + Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q +++ N+ L G N LN D + I Y P + + + Sbjct: 241 KVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ +Q + N P + + + +K E NYEIN + Sbjct: 301 LKEKATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIEAQG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+E +S+AVVVNK +S +I +V+ A G +SR +++ M Sbjct: 358 KIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAGGDSRV--QVSVQGMQ 402 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + M + V ++ L++ + R + + Sbjct: 403 FNQD--------LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFIMMRRKKKETSLAT 454 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + P I+ + ++ Sbjct: 455 AEEEALATAEP--------------------------------IEEIDFTYEDEKKKQIE 482 Query: 533 HMIEINEERFAKILRKWARSE 553 +I+ E +I+R W E Sbjct: 483 KLIKEKPEIVVQIIRTWLNEE 503 >gi|52080223|ref|YP_079014.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580] gi|52785600|ref|YP_091429.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580] gi|319645998|ref|ZP_08000228.1| FliF protein [Bacillus sp. BT1B_CT2] gi|52003434|gb|AAU23376.1| flagellar basal-body M-ring protein [Bacillus licheniformis ATCC 14580] gi|52348102|gb|AAU40736.1| FliF [Bacillus licheniformis ATCC 14580] gi|317391748|gb|EFV72545.1| FliF protein [Bacillus sp. BT1B_CT2] Length = 533 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 95/572 (16%), Positives = 200/572 (34%), Gaps = 62/572 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +L + + + + ++L ++ + ++L + +S LY L + Sbjct: 4 NLLQIKTKITDFWKNRSKLQKILLIGIVALAVILSIIIGIVASSNKMVPLYKDLSAEETG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I L E I ++ +GS I VP V + ++ LAA+GLP S S Y F + FG Sbjct: 64 QIKQVLDEKGIPSEVATDGSVIKVPEEKVDELKVDLAAEGLPKSGS-IDYSFFGENAGFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIR 178 +T ++ +V+A + E++ I+ I GI ++V I +P F + + ++ Sbjct: 123 MTDNEFDVLKVKATQTELSNLIKGIDGIKDSKVMINLPKESVFVGEEKPEASASIVLQVK 182 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIV 234 + + HLV+ +VPNLD ++ ++D E + + Sbjct: 183 PGHTLDQNEINGLYHLVSKSVPNLDPKNIVIMDQNSTYYDQTGKESGSYADSYSSQREVK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 I+ +++ I L +G D +V ++++ + E + +P + S Sbjct: 243 AQIEKDLQRQIQTMLGTMMGQDKVVVSVTSDIDFTKENRTEDLVEPVDKENMEGITVSAE 302 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + +Q +N + + + +K EE+ N E+N Sbjct: 303 RVSETYSGQGAQAGGVNGTGEN-DVTNYAETEGGTGNGDYEKSEERINNEVNRIHKEIAE 361 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--------GINSR 401 YK+ L + V+V +S + D ++ IV + + Sbjct: 362 SPYKIRDLGVQVMVEPPDANNP--QSLPAEREDDIKKILSTIVKTSIDKNYEEEPLTDED 419 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 + I ++ F Q + GT A + ++ + L R Sbjct: 420 VENKIVVSVQSFDGKQTIDEGTETGGIP-------MWAYIAGGAALVAVIGLIIWLVRRR 472 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + + + ++ + + +++ T Sbjct: 473 KNRDDEYEEEWYETPQEPIRVADVNNEKETEET--------------------------- 505 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 506 ----VRRKQLEKMAKDKPEEFAKLLRSWLTED 533 >gi|297544710|ref|YP_003677012.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842485|gb|ADH61001.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 503 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 105/562 (18%), Positives = 206/562 (36%), Gaps = 75/562 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + + + L + ++ + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKF---DKKQKMQLGVIAILLFIGVSLLVYIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L + ++IS++G +I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASV 175 T + + L+ EI ++++I G+ A V+IV+PD +F A + Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIV 234 ++ + I V+ +V L +VTV+D+ GK+LTA + ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQ 239 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291 + +Q +++ N+ L G N LN D + I Y P + + Sbjct: 240 KKVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQ 299 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + +++ +Q + N P + + + +K E NYEIN + Sbjct: 300 ELKEKATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIEAQ 356 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 K+E +S+AVVVNK +S +I +V+ A G +SR +++ M Sbjct: 357 GKIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAGGDSRV--QVSVQGM 401 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F ++ + M + V ++ L++ + R + + Sbjct: 402 QFNQD--------LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFIMMRRKKKETSLA 453 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + P I+ + ++ Sbjct: 454 TAEEEALATAEP--------------------------------IEEIDFTYEDEKKKQI 481 Query: 532 LHMIEINEERFAKILRKWARSE 553 +I+ + +I+R W E Sbjct: 482 EKLIKEKPDIVVQIIRTWLNEE 503 >gi|288550127|ref|ZP_05969368.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] gi|288316307|gb|EFC55245.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC 35316] Length = 533 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 112/557 (20%), Positives = 211/557 (37%), Gaps = 46/557 (8%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 +A+ ++ + + + ++ Y LY E V ++ L +I +RI+ + I Sbjct: 1 MAAGGVLLVAAIVF-SLWRSNQGYVALYGSDEKLPVAQVVEVLGAESIAYRINPDNGQIL 59 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP + +AR+ LAA+G+ ++ GYEL DK G + F+Q + R+LEGE+AR+I Sbjct: 60 VPEDKLPRARMALAAKGI-TAVMPDGYELMDKDEMLGSSQFVQNVRYKRSLEGELARSIM 118 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPN 201 ++ + ARVH+ + + SF +++ + +R + AI LVA +VP Sbjct: 119 ALDPVENARVHLGLSESSSFVMTNKPQSSASVMLQLRYGKHLDEQQVAAIVQLVAGSVPG 178 Query: 202 LDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 + G V V+D G LL+ N + + +++ I++E NI L+ G +N Sbjct: 179 MQPGSVRVVDQAGNLLSENGQQGGTSMASIRQGRDVIERIKNETTNNIAALLSPLFGNEN 238 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP---- 313 FR +V ++M + + + K + + + + N P Sbjct: 239 FRISVTPTVDMSSVEETQERL---GKEPQVSDENISHENTTNELAMGIPGSLSNRPVNQP 295 Query: 314 -----------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + + + +EQ Y + H YKLE+L +AV Sbjct: 296 APATPPMAANAQTAQTETQNRTPSSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLRVAVA 355 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 +N+ L + ++V A GI RGD++T+ + F++ Sbjct: 356 LNQAA-------KPLASMTPEQLTALTRLVEDAAGIEKDRGDSLTLDRLAFIDRTPDGFP 408 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + + +L+ L LR L ++ S Sbjct: 409 EPKWWQDPNIQYW-------GQNGGIGMLILLALLFGLRPLAQRYGRREPVELAAIEGSA 461 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + + L + + S + + V L + E ER Sbjct: 462 QNEAIENDMVTTESGLTGLPGPAFNQDTELPPQSSGLETKVEY-----LQMLAENETERM 516 Query: 543 AKILRKWARSEIEDRYT 559 A++L++W S T Sbjct: 517 AEVLKQWINSNERTDNT 533 >gi|254458688|ref|ZP_05072112.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1] gi|207084454|gb|EDZ61742.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1] Length = 570 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 116/571 (20%), Positives = 222/571 (38%), Gaps = 25/571 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56 M Q T L + +I+A+ I+ + + + + Y+ L+ L Sbjct: 1 MDFKILFSQLVVLYTKLTSQQRIIIAAAIIGIVSFLIFMVVYTAKKNTDDEYEILFNSLS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D +I L + I +++ DN + I VP +V K RI +A+ G+P + G+ELFD Sbjct: 61 SEDAAKIVDQLEKDGIVYKLEDN-NIIKVPKDIVYKERITIASMGIPKNRG-VGFELFD- 117 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TSF Q + +RALEGE++RTI ++ I +A V + +P F P+ASVM Sbjct: 118 TQEFGATSFDQNVKYLRALEGELSRTINALGPIESASVSLAIPKDTLFIAKQVDPSASVM 177 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSL 231 ++ K I++LVA+AVP + V +++S G+ L + + Sbjct: 178 VQLVEEQRLSPKQIRGIKNLVASAVPKMKASAVMLINSEGETLGDEDEMAQMGELSTVQQ 237 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + + I + ++ F+ G + + V E + Q YDP++ V Sbjct: 238 KFKTKEEKKRQSKIIQVISPFVGGEEKVVAQVTIEFDFSIQNSTSETYDPENVVRSEQVS 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + + ++ N+ V K ++ E +K +NYE+ T Sbjct: 298 EEKREGGSPAEIGGVPGTVSNIGPVQGLK--SNQTNEKYEKNTGTTNYEVGKTVSTTKSQ 355 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSA------DQGKIDSYLAEINKIVSAATGINSRRGD 404 +++R+S AV+V+ ++ + +S L + +V + GIN +RGD Sbjct: 356 FARIKRISAAVIVDGKYKFKLDAEGKSTDELEYEPLQESDLDALASLVGRSIGINDQRGD 415 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I++ ++ F ++ + T + + + V L L +++ Sbjct: 416 QISVKNLQFKR----GDTHIEADGVSQAVTFSQTYLAPFSGVFKYVFVLILLLILYKKVI 471 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + EV + P + + Sbjct: 472 SPFALRMLEVSKEDDDLDRPTLDIDDDEEEDLVEKVQMMRKKVESQLGVGDGFNEDELKH 531 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +M E E A +L+ E + Sbjct: 532 EVLLEKVRNMAEDAPEEIAALLQSLLTEEED 562 >gi|167037669|ref|YP_001665247.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116084|ref|YP_004186243.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856503|gb|ABY94911.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929175|gb|ADV79860.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 503 Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats. Identities = 104/561 (18%), Positives = 204/561 (36%), Gaps = 73/561 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + + + L + ++ + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L I ++IS++G++I VP+ + R+ LA +G+P + + NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + L+ EI ++++I G+ A V+IV+PD +F A + Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235 ++ + I V+ +V L +VTV+D+ GK+LTA ++ + Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q +++ ++ L G N LN D + I Y P + + + Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ +Q S N P V + ++ E NYEIN + Sbjct: 301 LKEKATGTQGGSPAGTATNNPPV---ISTTGNGTSDYNRTEITINYEINQIKTSLVQAQG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+E +SIAVV+N Q +S +I +V+ A G +S +++ M Sbjct: 358 KIENISIAVVIN-------------QNLNNSMKQQIADLVTKAAGGDSLV--QVSVQGMQ 402 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + + + V+ + LV GL + + Sbjct: 403 FNQD---------LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + P I+ + ++ Sbjct: 454 TAEQEVLATVEPTYE-------------------------------IDFSDKDEKKKQIE 482 Query: 533 HMIEINEERFAKILRKWARSE 553 +I+ + +I+R W E Sbjct: 483 KLIKEKPDIVVQIIRTWLNEE 503 >gi|304414645|ref|ZP_07395721.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1] gi|304283183|gb|EFL91591.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1] Length = 532 Score = 286 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 104/544 (19%), Positives = 221/544 (40%), Gaps = 32/544 (5%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 + I + + +S Y L+ E ++ L +I +R++ + I V Sbjct: 1 MGIAAAMISGAIIFSLWRSSQSYTVLFGSQEQIPTTQVVEVLGSESIPYRVNPDNGQILV 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + +G+AR+ LAA+G+ +++ GYEL DK G + FMQ + R+LEGE+A+++ + Sbjct: 61 AENQLGRARMALAAKGI-TAALPVGYELMDKETMLGSSQFMQNVRYKRSLEGELAQSVMA 119 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNL 202 + + ARV + M + SF +++ + ++ + + AI LV+ +VP + Sbjct: 120 LDAVEYARVRLGMSEASSFVITTKPDSSASVILRLKPRHQLTPEQVGAIIQLVSGSVPGM 179 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDNF 258 V V++ G+LL+ N +L + + +Q +E N+ L +G +N+ Sbjct: 180 KASQVRVINQNGELLSEGYQNSNNGLSTLKSGPELARKLQLAVEKNVANLLNPIVGANNY 239 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 R +V +L++ + + Y R++ + + + S + N P Sbjct: 240 RISVTTQLDLSNIEEKLERY---GADPRTLDENVNQESSSDERAMGIPVTLSNQP---AA 293 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 K ++ + Q + + H +YKLE++++A+V+NK SA + Sbjct: 294 KNNAQSPSTMLNRSQSQRKFAYDRDIRHVRHPSYKLEKMTVAIVLNKAA-------SALE 346 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 L E+ ++ A GIN RGD++T+ + F + + R Sbjct: 347 QWTTPQLDELKRLAIDAAGINFDRGDSLTMNLITFTPQTEYEETPLPWWQEPAALRW--- 403 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAK-----KGEVGGKSILSPPPISSAVTTGL 493 + + G+ L + ++ +++ + Sbjct: 404 -AQMGGIGLIAFFFLWFGVRPLIQRVTREEQTSSTSVASPDQPQNLTPETTAAMGDAAPK 462 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ + D + F +L S + +K S + + +R A+++++W S Sbjct: 463 INDEKVLADVLPKSSFQEEDDLPSPASGLETKIS--HMQMLAYSETDRVAEVIKQWINSN 520 Query: 554 IEDR 557 R Sbjct: 521 ERTR 524 >gi|89895735|ref|YP_519222.1| hypothetical protein DSY2989 [Desulfitobacterium hafniense Y51] gi|89335183|dbj|BAE84778.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 537 Score = 286 bits (730), Expect = 9e-75, Method: Composition-based stats. Identities = 110/561 (19%), Positives = 216/561 (38%), Gaps = 33/561 (5%) Query: 1 MAI--LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + + L R + +I + L + ++ ++ ++P Y ++ +L Sbjct: 1 MNFSWAEIKQSILEFWGKLSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDI 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + I+ L E ++++ NGS+I VP R+ LA+ GLP S S E +K Sbjct: 61 EAGEITSELDELKANYKLGSNGSAILVPEKEAAAIRLKLASAGLPKGSEFSWSESLNKT- 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 G T + + L+ E+ T++++S + ARVH+ +P+ F + TA+V + Sbjct: 120 RVGETESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLT 179 Query: 179 A--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK----LLTANEMERNILGKSLS 232 + I +L+AA+V L + DVT+LDS G +L+ + + + Sbjct: 180 LKEGSSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLSEDNQPGKMTATQIQ 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + Q + ++ L G A LN D + + P + + S Sbjct: 240 LKQLTEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGAVLSESHTT-- 297 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + TS +A V+ N+P +++K + N++++T Sbjct: 298 -ENTTNTSPGGTAPGVDTNVPGYLA--ADGTWITSSSEKTSDTLNHQVDTTQEQRIKSPG 354 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RLS++V++ S +ID + +I IV++A GI+ RGD I + ++ Sbjct: 355 DIARLSVSVLL--------DADSISADQIDDQIEKIEAIVASAAGIDRDRGDVIQVAALP 406 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + T I V + L+ F+ R DA+ Sbjct: 407 FDKTGALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFR--MRSKRKQDAESL 462 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E+G P + + + A Q + +Q + + + Sbjct: 463 ELGQALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQ-------KIKESVD 515 Query: 533 HMIEINEERFAKILRKWARSE 553 ++ N + A++++ W E Sbjct: 516 IYVQNNPDEVARLVKTWLAEE 536 >gi|196247639|ref|ZP_03146341.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16] gi|196212423|gb|EDY07180.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16] Length = 527 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 94/574 (16%), Positives = 189/574 (32%), Gaps = 70/574 (12%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + +++ + + + I V + FF LY L Sbjct: 1 MNSKWKEWWGRARSFWQERTKKQKWLAIGGIAVVLFSIGIGVFFATRTEMVPLYSNLTPQ 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + +I L + ++D G++I VP V ++ LAA+G+P+S Y F + Sbjct: 61 EAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNA 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI 177 SFG+T + +++A++ E+A +++I G+ A+V I +P F +AS+++ Sbjct: 120 SFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVL 179 Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSL 231 R + A+ HLVA +VPNL ++ +++ + N G Sbjct: 180 RTKPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTGATFASQQ 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286 I + I+ +I+ + + L +G D +V A+++ ++ E + P D + Sbjct: 240 QIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAV 299 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S++ K+ + P N + + N ++ EE N E+N Sbjct: 300 SVQRIKETYAGSGAPPGGTAGTGTNETP--GYQGASGATNGNYERTEETINNEVNKIKKQ 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GIN 399 YK+ L I V+V S ++ + IV + + Sbjct: 358 IVESPYKIRDLGIQVMVEPP--DPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTD 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 I ++ F F + ++ + L L Sbjct: 416 EDINSRIVVSVQKFNGKPTFTEPDPVRPAWWWYAAGAGALLLIALLLFFWL--------- 466 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 D + + Sbjct: 467 ---------------------------------RRREDEEEDEEFVFAPPLPAEPELPEP 493 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +L + + + FAK+L+ W E Sbjct: 494 PETEERMRRRQLERLAKEKPDEFAKLLKTWLSEE 527 >gi|254519422|ref|ZP_05131478.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA] gi|226913171|gb|EEH98372.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA] Length = 523 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 106/564 (18%), Positives = 226/564 (40%), Gaps = 55/564 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + + S + + + + ++ I+ + F+ ++ Y L+ L+ SD Sbjct: 4 MDKLKESFSKLWGKFKSFSKGIRIAIIAALVTFIIAIGSLFFYNSANKYKVLFSNLDASD 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++ L E +D +I G +I VP + V + R+ LA + S + GYEL D NS Sbjct: 64 AQLVTNKLKEKKVDMKI--EGETIMVPKASVDELRLELAPE---LSDGSKGYELMDTGNS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR- 178 FG+T ++ ++R +GE+ +TI+S I RVHI F + A+V ++ Sbjct: 119 FGMTDEEFKLKKLRMQQGELEKTIKSFPQIDTVRVHITPSKDSVFVEDKEPGKAAVYLKL 178 Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-------GKS 230 N + E+I LV+ + N+ ++ V+D LLT + + K Sbjct: 179 LPGNKLGKEQVESIVALVSGSTENVPKENIEVIDDNMNLLTKDLNNSDGTEVSSETIEKQ 238 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 ++ + + +I+ +I L +G + +S+V +L+ D++Q E + DP+ KV S + Sbjct: 239 FNLEKKYEEDIQKSIIDLLEPVVGKNKVKSSVNVDLDFDSKQKTETIIDPN-KVIVSQQT 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ T + + + + + + ++E +NYE T Sbjct: 298 IKEKNGINTGENSGGP-----VDNNMGNTIDEGTTGNGSSREEVNTNYESGKTETKTISA 352 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++RL+ +V ++ + A I K V+ A G+N+ RGD++++ Sbjct: 353 PGEVKRLTASVFIDGN-------------IDGNVQAAIEKSVANAIGLNTERGDSVSVVG 399 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 M F + S ++L++ + L L+ + + L R + ++ + Sbjct: 400 MTFDPITKEEAQKEFDSINELLAKENRNKMIIYSVLGLLGLIIIVVILILVRRKSKNNQE 459 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + E ++ +D + + + + + Sbjct: 460 EKENLL---------------------DVVIDDRLSNENTEVMPSINFESINPKAHIENE 498 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 + ++ A I++ W Sbjct: 499 IKKYATDKPDQVADIVKSWLAENE 522 >gi|138894740|ref|YP_001125193.1| flagellar MS-ring protein [Geobacillus thermodenitrificans NG80-2] gi|134266253|gb|ABO66448.1| Flagellar basal-body M-ring protein [Geobacillus thermodenitrificans NG80-2] Length = 527 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 93/574 (16%), Positives = 188/574 (32%), Gaps = 70/574 (12%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + + +++ + + + I V + FF LY L Sbjct: 1 MNSKWKEWWGRARSFWQERTKKQKWLAIGGIAVVLFSIGIGVFFATRTEMVPLYSNLTPQ 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + +I L + ++D G++I VP V ++ LAA+G+P+S Y F + Sbjct: 61 EAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNA 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI 177 SFG+T + +++A++ E+A +++I G+ A+V I +P F +AS+++ Sbjct: 120 SFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVL 179 Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSL 231 R + A+ HLVA +VPNL ++ +++ + N Sbjct: 180 RTKPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTRATFASQQ 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286 I + I+ +I+ + + L +G D +V A+++ ++ E + P D + Sbjct: 240 QIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAV 299 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S++ K+ + P N + + N ++ EE N E+N Sbjct: 300 SVQRIKETYAGSGAPPGGTAGTGTNETP--GYQGASGATNGNYERTEETINNEVNKIKKQ 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GIN 399 YK+ L I V+V S ++ + IV + + Sbjct: 358 IVESPYKIRDLGIQVMVEPP--DPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTD 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 I ++ F F + ++ + L L Sbjct: 416 EDINSRIVVSVQKFNGKPTFTEPDPVRPAWWWYAAGAGALLLIALLLFFWL--------- 466 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 D + + Sbjct: 467 ---------------------------------RRREDEEEDEEFVFAPPLPAEPELPEP 493 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +L + + + FAK+L+ W E Sbjct: 494 PETEERMRRRQLERLAKEKPDEFAKLLKTWLSEE 527 >gi|57168454|ref|ZP_00367588.1| flagellar M-ring protein FliF [Campylobacter coli RM2228] gi|305432873|ref|ZP_07402031.1| flagellar M-ring protein FliF [Campylobacter coli JV20] gi|57020262|gb|EAL56936.1| flagellar M-ring protein FliF [Campylobacter coli RM2228] gi|304444027|gb|EFM36682.1| flagellar M-ring protein FliF [Campylobacter coli JV20] Length = 560 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSGANNGYAVLVDNV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 + S I L + N+ + + I VP V + R+ +A++GL S G+E FD Sbjct: 61 DPSSSAAIVAKLEQNNVPYILESESK-ILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 SFG T+ Q + RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQSFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AA+P L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA + G D R +V + + Q+ + +YDP+ V L+ Sbjct: 238 YKSDQERALEDKIIETLAPYAGGTDKVRVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKEPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVVRTSAAVTIDGKYQDVVDENGDVKSEYVPLSKEELASVESIVKNTINYSANRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + R I + +++ +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----GRFIEPFIPPVKYIIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + + P + N A + + + I + Sbjct: 472 L--EDVAAQEEVQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQ---YEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKSEEIAALLQNLIQNDTEFGEKD 559 >gi|262273540|ref|ZP_06051354.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] gi|262222518|gb|EEY73829.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886] Length = 548 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 116/548 (21%), Positives = 215/548 (39%), Gaps = 30/548 (5%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 R + L I V + + + + Y LY + E D N++ AL + D+ + Sbjct: 22 FSGARTVALLGTIAVAVAVAVVLGLW-QGGEYRPLYGEQEQYDRNQVIAALEQNRFDYYV 80 Query: 77 SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 +I V S V ARI +AA G+ + +G E+ +K + G + F++ LE Sbjct: 81 EPQKGNIMVERSQVAAARIAMAAAGI-EAKVPAGLEILNKDFALGTSQFIENARYRHGLE 139 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRH 193 GE+AR+I ++ G+ ARVH+ +P F K + V++ + AI + Sbjct: 140 GELARSIMTLDGVSNARVHLALPKQTLFVGRNKELPSASVVVVLTPGRVLHSDNIAAIVN 199 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKA 248 LVA +VP+L V V+D G LL+ + + LS Q ++ E + K Sbjct: 200 LVAGSVPDLQADRVNVIDQHGNLLSNQIGQGTGIGELGNSQYLSYTQKLEAEYIESAAKM 259 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +GV+NF+ V A +N D + E Y P V +PE Sbjct: 260 LRPMVGVNNFQVEVAASVNFDRVEATEESYGPKGTVRNEFSS---FDNEGQKEPEGVPGT 316 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + N + E +Y ++ + +ERL+++V++N Sbjct: 317 QSNRLP---EGKEDGDGTLVNKRGESSKDYAVDRTLKHIKYQQGSVERLTVSVLLNGEA- 372 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + D+ I ++ A G++ RGD +++ F + + + Sbjct: 373 ---------ESFSDAQRENIRTMLIDALGLDEARGDKLSLFVHPFNTDAPELLASTPSWW 423 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 MD + + I + V + LLV + A+R L + +++ G + + + Sbjct: 424 MDNIWLDYLRYILSAVVSLVILLV--VIRPAVRALAQQNASRETVNAGANEGTLSRTVAG 481 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 G + + + S + +L + + S L + E ER A ++++ Sbjct: 482 EFVGGSTDMAVGSEGSKTPAMNDMPDLPTPETGLEGQSSY--LQMLSEREPERVAHVVKQ 539 Query: 549 WARSEIED 556 W + D Sbjct: 540 WMTPKNAD 547 >gi|212639567|ref|YP_002316087.1| flagellar MS-ring protein [Anoxybacillus flavithermus WK1] gi|212561047|gb|ACJ34102.1| Flagellar basal body M-ring protein FliF [Anoxybacillus flavithermus WK1] Length = 529 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 104/574 (18%), Positives = 217/574 (37%), Gaps = 66/574 (11%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + + + + + + ++ +I + ++ FF ++ LY L Sbjct: 1 MNERLKQAIERLKLFWSERTKQQKMMALGLIGLLVVSVALTAFFATRTNFVPLYSNLSPQ 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + +I L + I +I+DNG++I VP +V ++ LAA+G+P S S Y F K + Sbjct: 61 EAGQIKATLDQRGIKSQITDNGTTILVPEQLVNTLKVELAAEGIPDSGS-IDYSFFGKNS 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASV 175 FG+T + ++ A++ E+A I+SI G+ A+V I +P F + + Sbjct: 120 GFGMTDNEFNVLKIEAMQTELANLIKSIDGVEDAKVMINLPQPTIFVGDQQEEASASIVL 179 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SL 231 +A + +++ HLV+ +VPNL ++ +++ + E GK Sbjct: 180 KTKAGYKFNEQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKNEENFSSGKTFAEQY 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286 + Q I+ +I+ + + L +G D +V A+++ + +E + +P + Sbjct: 240 EVKQQIERDIQRRVQQMLGTMIGQDKVVVSVTADVDFTQENRQEELVEPVDKENMEGIAV 299 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S++ + + +QP V N + + + ++ EE N E+N Sbjct: 300 SVQRITETFSGQGAQPGGTTGVGGNAVP--GYQGANGGTNGDYERIEETINNEVNRIKKE 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-------IN 399 YK++ L I V+V + + A +D + IV + + Sbjct: 358 IVASPYKVKDLGIQVMVEPPKANDPNSLPAQT--VDDITKILGTIVRTSVDKDIAGQWTD 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + + + ++ F FN T + ++ A + + FL L Sbjct: 416 TDLQNRVVVSVQPFNGKVQFNEQTSTIPTWAYIAGGGAIALLLALL-------VFLWLRK 468 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 ++ L+ + +A+ + + + + R Sbjct: 469 RKK-----------------------EQLDDELLLQEEPVAVQIPDVNEEVETESTLRR- 504 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L + + E FAK+LR W E Sbjct: 505 ---------KQLEKLAKEKPEEFAKLLRTWLAEE 529 >gi|283955743|ref|ZP_06373234.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792698|gb|EFC31476.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336] Length = 560 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 113/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFIEPFIPPVKYFIAAILLFIFYKKVITPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + + + +S + Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDVEDTLEKMNAARKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKSEEIAALLQNLIQNDSEFGEKD 559 >gi|94495429|ref|ZP_01302009.1| flagellar M-Ring protein [Sphingomonas sp. SKA58] gi|94424817|gb|EAT09838.1| flagellar M-Ring protein [Sphingomonas sp. SKA58] Length = 586 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 113/580 (19%), Positives = 222/580 (38%), Gaps = 51/580 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +D + + ++ + + AA + P +L+ L SD + + Sbjct: 33 MDAIKARVTGFMKQPAVAKSLPLLGLIGTVAVAGAAWLALREPPQRDLFRGLPDSDKSAV 92 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 + L + + + ++G +++V KA++ LAAQGLP S + G + D + G + Sbjct: 93 AQVLDQNGVRYDFDNSG-AMTVAEDDYFKAKMMLAAQGLPKS-APDGNSMIDSLP-MGAS 149 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--IN 181 ++ A E ++ARTI++I + A+VH+ + F + +P+ASVM+R Sbjct: 150 RAVEGEKLRSAREMDLARTIEAIDSVETAKVHLAVEPPSVFLRERTKPSASVMLRLAQGR 209 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241 + AI HLVA+++P L D++++D G+LLT N+ + L++ I+ Sbjct: 210 QLTQQQVSAIVHLVASSIPELSPDDISLVDQNGRLLTDNDGNA-GDDRQLAMQGKIEDRY 268 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ--RSET 299 ++ L LG NF + V AELN +Q Y D RS S + Sbjct: 269 RQSVIALLTPILGDGNFSTEVHAELNFAERQATRETYPQDEARLRSEAGSWASDPRGQGK 328 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQ--SNYE 339 + N V + + K EE N+E Sbjct: 329 GEASGIPGALSNQAPVDPTVTQTNPNGQAVTQGQTAQAQGPGTPADPLMKTEETFNRNFE 388 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 + + ++RLS+AV ++ G + + +A + +V A G + Sbjct: 389 LGREVSVVRDATGTVKRLSVAVALDNGPDGK--------PRSPQEIAALEALVKGAVGFD 440 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 RGD + ++S F++ + + ++ L+R+ + L+ LLV F Sbjct: 441 QTRGDVVALSSRSFVKEATAETPWYEADWIAPLARNVS-------ALLVALLVIFGIGRP 493 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 L + + V + + +N S L Sbjct: 494 LLKRRAAAQEAAAAERAEQK--------QVIGQAISTELTKQAVANPADPSAPVTLDMIS 545 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559 ++Y Q + + ++ + +R A ++R + +++ Sbjct: 546 STYDYAQRADLIRNFVKQDPDRAALVVRDLLKDAKKEKEN 585 >gi|206895778|ref|YP_002246683.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM 5265] gi|206738395|gb|ACI17473.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM 5265] Length = 521 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 109/560 (19%), Positives = 210/560 (37%), Gaps = 46/560 (8%) Query: 1 MAILDQ--LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + + L +L + + + V++V ++ +++N P Y L+ L Sbjct: 1 MNLENIPVLKDLVNFWKNLEKNQKRNIIVVLVVALVAIGGLVYYLNRPQYALLFSDLMPE 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L N+ +++S +G+SI VP+ V R+ LA+ GL S+ GYELFD ++ Sbjct: 61 QAQAIVSQLESQNVRYKLSSDGASIYVPNDKVTSLRLELASSGLV-GSTKPGYELFDNIS 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASV 175 + LT Q+I RALEGE+ RTI + G+ + VH+ +P + A+ + Sbjct: 120 NIFLTQEEQQIMYQRALEGELERTISGMPGVKSVSVHLSLPQRSLWTVTSTQTAQGAVYL 179 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 ++ EAIR LVA AV + +V + +++ +L + + + L I + Sbjct: 180 TLKPGYSLSANQVEAIRQLVAHAVEGMSPENVVIAEASTGILAGDLAQSGVDKGYLEIKK 239 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + I L G +N + ++ + Q I+ + + +S Sbjct: 240 QLDELYASKIRSFLGQTFGPENIMVSADVDVEVTKQNIQSETW----GNTATKNVSDTES 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKL 354 S +S V N+P V + +++Q NYEI+ ++ Sbjct: 296 WSSSSSSGGPVGTATNVPGAIPSYVYTSTGEGPYNYYRQQQINYEISRTISEIVPQEVEI 355 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + + IA +V+ + ++ + ++++A G+++ RGD +TSM F Sbjct: 356 KNVKIAAIVDSSVFKDYAVTAST----------VESLIASAAGLDNARGDVALVTSMPFA 405 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + R A + + + V LL+ + LRR A Sbjct: 406 SLAREKEAQEAQLLAEAQRR--ARLYSYIAIAVVALLILAMVFILLRRSRRTAPAPVPAG 463 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 G P + + K + + Sbjct: 464 AGLGEALGQPRPIISLERPLTPEE-----------------------EKIKLAMEEIQKA 500 Query: 535 IEINEERFAKILRKWARSEI 554 ++ + A ++R W + E Sbjct: 501 LQEHPNDVADLVRMWMQEEW 520 >gi|222099438|ref|YP_002534006.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359] gi|221571828|gb|ACM22640.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359] Length = 537 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 102/564 (18%), Positives = 213/564 (37%), Gaps = 51/564 (9%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M + +Q+ +K S+ R R ++ + I+ + +PHY L L Sbjct: 5 MNLFEQIKNLWKKIFDLWNSMPRERRFLVGGIAAALIISIVLFAIIAATPHYRLLVAGLS 64 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + I L E NI +++S G I V V + R+ LA++G+ + G+ + Sbjct: 65 EEEAGTIIQKLEEMNIPYKVSP-GGDIYVSDKYNVYELRMKLASEGI-LGGTRQGFSILS 122 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPT 172 + + FG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + R + Sbjct: 123 ENS-FGATSFDKQVKYQIALQQELERSIMTIRGVKDARVHLVLPKYTYYVRGEMAEPRAS 181 Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229 V++ + I LV+ AV L +V V+D+ + L+ + E + Sbjct: 182 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLESDEETFLASS 241 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L + Q ++ E + KAL + G LN + Y+ ++ E +R Sbjct: 242 KLELKQQLEKYYENKLKKALESVFGPGRVEVIPDVSLNWTKIETEMKRYEAPARREGLVR 301 Query: 290 LSKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + P V E N+P +S V + ++ +NYE+N Sbjct: 302 SQETETERSQNLPVSGGEVGTESNIPPLSYPSVSGEGTS-TYERTHTITNYELNEIYQKI 360 Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-T 405 ++ ++ LS+AV++ S +++ IN +V G + + Sbjct: 361 LQNHEGEISSLSVAVII--------DASSTVLQSNNNWNDVINDLVEKGIGSVTSSASFS 412 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + + ++ + R + + T L+ ++ + +RR+ Sbjct: 413 VAVAFLPFDRT-IERTLQRELEQIQARKRFTMYSLGIAILGFLTFLLMYILIVQIRRIRA 471 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 A++ + + + + L +++ Sbjct: 472 RKLAEERRRKLEEEIKEVLQEEMKEEKELSPEEKELMELIEELE---------------- 515 Query: 526 QSDLRLLHMIEINEERFAKILRKW 549 ++ + A+I+R W Sbjct: 516 -------NIFSRSPADIAEIVRLW 532 >gi|239826613|ref|YP_002949237.1| flagellar MS-ring protein [Geobacillus sp. WCH70] gi|239806906|gb|ACS23971.1| flagellar M-ring protein FliF [Geobacillus sp. WCH70] Length = 527 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 108/570 (18%), Positives = 214/570 (37%), Gaps = 66/570 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + L +F + + I + + + +++ A +F + LY L + + Sbjct: 5 LKEWLSRFTLFWKERTKKQKWIAIASLALFLLITGVAIYFATRTEFAPLYSNLTPQEAGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L + + ++DNG++I VP +V ++ LAA+G+P+S Y F K SFG+ Sbjct: 65 IKATLDQRGVKSEVADNGTTIKVPKELVNSLKVDLAAEGIPNSG-TIDYSYFGKNASFGM 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181 T + ++ A++ E+A I+SI G+ A+V I +P F +AS++++ Sbjct: 124 TDNEFNVVKLEAMQNELANLIKSIDGVEDAKVMINLPQPSVFASDDQGEASASIVLKTKP 183 Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQ 235 + A+ HLV+ +VPNL ++ +++ + E G I + Sbjct: 184 GYQFSDQQIRALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNNENFSTGTTFATQQEIKK 243 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRL 290 I+ +I+ + + L +G D +V A+++ + E + P + + S++ Sbjct: 244 QIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQENREENLVAPVDEKNNEGIAVSVQR 303 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ + +QP +N V + + + ++ EE N E+N Sbjct: 304 IKETYSGKGAQPGGVAGTGEN--EVPSYQAGASETNGDYERTEETINNEVNKIKKHIVES 361 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-------INSRRG 403 YK+ L I V+V S Q ID + IV + + Sbjct: 362 PYKIRDLGIQVMVEPPNPKNPN--SLPQQTIDDIQKILGTIVRTSINKQDGQTLTDQDIQ 419 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + I ++ F F + +V +G +L+ L + RR Sbjct: 420 NRIVVSVQKFNGKPTFTEPKQTIPMW-----------VYIVGGIGLVLLIALLILLWRRR 468 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 ++ ++ ++ + P I N Sbjct: 469 KEEEEEEEEDILEPMVQEIPDIHEE-------------------------------NETE 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 S +L + + + FAK+LR W E Sbjct: 498 STMRRKQLEKLAKEKPDEFAKLLRTWLSEE 527 >gi|58038899|ref|YP_190863.1| flagellar MS-ring protein [Gluconobacter oxydans 621H] gi|58001313|gb|AAW60207.1| Flagellar M-ring protein FliF [Gluconobacter oxydans 621H] Length = 482 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 117/479 (24%), Positives = 210/479 (43%), Gaps = 18/479 (3%) Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 VP V +AR+ LA GLP S + GYE+FDK NSF T F Q I RALEGE+ R+I Sbjct: 1 MVPDDDVARARLLLAQSGLP-SGGSVGYEIFDKGNSFTATQFEQTINETRALEGELERSI 59 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPN 201 + I G+ ARVH+V+ F ASV++ +S A+ +LV+AAVP Sbjct: 60 RLIHGVRNARVHLVLRHRELFSTDEQNAQASVLLSMDGGRRLDEESIAAVVNLVSAAVPG 119 Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINKALAAFLGVDNFRS 260 LD +++++D+ G +L + G+S + I+ I + L + LG + R Sbjct: 120 LDAHNISLIDNRGHVLLKQGEGNSNGGQSAEEQRQLIEQRIAREVEDLLGSSLGPGHVRV 179 Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 +N D + + YDPD +V RS + ++S +Q + TV N+P+ + Sbjct: 180 EANVTMNNDHVRETQENYDPDQQVLRSQQT--KTEKSINTQGSTNTTVSNNLPNANA--- 234 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 ++ ++++E+ +NYEI+ D ++ R+S+AV+V+ ++ G ++ Q + Sbjct: 235 GQQQNGSQSNRQEQTNNYEISKTVRTLVQDQPRIARISMAVMVDGISQSDGKGHASWQPR 294 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 L + + +A G + RGD +T+ SM F + + + I Sbjct: 295 NQEELGRLTALTKSAVGFDQSRGDVVTVMSMKFTDMDMEMKPETSGWSKFFTHSNQMEAI 354 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 +F +V F + L R + K S P + + + D+ + Sbjct: 355 RFGLFAACLAMVLFFVVRPLLRPIGEPSSGKLLNFAASKDRTPAVDLSSQGAVYLPDSQS 414 Query: 501 LDSSNQDIFS---------HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + + + S + + S +++ ++E + ++R W Sbjct: 415 ERARTPMLEAAYVNAEPVDEETVSVSGVQGRIRASSVQKVVDLVETHPSESIALVRGWL 473 >gi|20807889|ref|NP_623060.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Thermoanaerobacter tengcongensis MB4] gi|20516454|gb|AAM24664.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Thermoanaerobacter tengcongensis MB4] Length = 503 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 103/561 (18%), Positives = 199/561 (35%), Gaps = 70/561 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +I + Q + + + L + ++ + + N P+Y LY L + D Sbjct: 4 SIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L + +++SDNG++I VP+ + R+ LA +G+P + + NS Sbjct: 64 IVVEKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + ++ EI ++++I G+ A V+IV+PD +F A + Sbjct: 121 STTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235 ++ + I V+ +V L +VTV+DSTGK+LT ++ + Sbjct: 181 LKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q +++ ++ L G N LN D + I Y P + + + Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ +Q S N P V + + DK E NYEIN Sbjct: 301 LKEKATGTQSGSPPGQPTNNPPV---YNQQNNNTSSYDKTETTINYEINQIKTTLVEAQG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+E +S+AVVVNK S +I +V+ A G G+ + ++ Sbjct: 358 KIESISVAVVVNK-------------PLNASMQQQIADLVANAAG-----GNNVKVSVQG 399 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 NQ + + I A + + G L+ + R+ + + Sbjct: 400 IPFNQDLLKAMQAQKKVAQGMPIYLWGIIAALAVGGGLVAFLMIRR--RKTKEVIPPAEE 457 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 EV + + + + ++ Sbjct: 458 EVLATAEPVEEIVITE-----------------------------------KDEKKKQIE 482 Query: 533 HMIEINEERFAKILRKWARSE 553 +I + +++R W E Sbjct: 483 KLIREKPDIVVQLIRTWLNEE 503 >gi|256750740|ref|ZP_05491625.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus CCSD1] gi|256750323|gb|EEU63342.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus CCSD1] Length = 503 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 202/561 (36%), Gaps = 73/561 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + + + L + ++ + + VN P+Y LY L + D Sbjct: 7 NFREQLTDFWNKF---DKKQKIQLGIIAILLFIGISLLVYLVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L I ++IS++G++I VP + R+ LA +G+P + + NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPVQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176 T + + L+ EI ++++I G+ A V+I +PD +F A + Sbjct: 121 ATTDQERRQKHLYFLQNEIQNSLKTIDGVQDAIVNIAVPDQNAFVLSNTTNQATAAVMLT 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235 ++ + I V+ +V L +VTV+D+ GK+LTA ++ + Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDSTAENANTQFTLQK 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q +++ +I L G N LN D + I Y P + + + Sbjct: 241 KVQEDLQNSIQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +++ +Q S N P V + ++ E NYEIN + Sbjct: 301 LKEKATGTQGGSPAGTATNNPPV---ISTTGNGTSDYNRTEITINYEINQIKTSLVQAQG 357 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+E +SIAVVVN Q +S +I +V+ A G +S +++ M Sbjct: 358 KIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAGGDSLV--QVSVQGMQ 402 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + + + V+ + LV GL + + Sbjct: 403 FNQD---------LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + P I+ + ++ Sbjct: 454 TAEQEVLATVEPTYE-------------------------------IDFSDKDEKKKQIE 482 Query: 533 HMIEINEERFAKILRKWARSE 553 +I+ + +I+R W E Sbjct: 483 KLIKEKPDIVVQIIRTWLNEE 503 >gi|295399809|ref|ZP_06809790.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius C56-YS93] gi|312111679|ref|YP_003989995.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1] gi|294978212|gb|EFG53809.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius C56-YS93] gi|311216780|gb|ADP75384.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1] Length = 529 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 107/574 (18%), Positives = 208/574 (36%), Gaps = 66/574 (11%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + L +F + + I + + + +++ A FF LY L Sbjct: 1 MNDRLKKWLNRFTLFWKERTKKQKWIAVASLALLLLIIGATVFFATRTEMVPLYSNLTPQ 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + +I L + NI ++DNG++I VP + ++ LAA+G+P+S Y F K Sbjct: 61 EAGQIKETLDQRNIKSEVADNGTTIKVPKDLADSLKVELAAEGIPNSGM-IDYSFFGKNA 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI 177 SFG+T + ++ A++ E+A I+SI+G+ A+V I +P F +AS+++ Sbjct: 120 SFGMTDNEFNVVKLEAMQNELANLIKSINGVEDAKVMINLPQPSVFASDNQGEASASIVL 179 Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SL 231 + + +A+ HLV+ +VPNL ++ +++ + E+N G Sbjct: 180 KTKPGYQFSDQQIKALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNDEKNSTGTTFAAQQ 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286 I Q I+ +I+ + + L +G D +V A+++ ++ E + P + + Sbjct: 240 EIKQQIERDIQQRVQRMLGTMMGQDKVAVSVTADIDFTQERREENLVAPVDEENNEGIAI 299 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S++ ++ + P N ++ EE N E+N Sbjct: 300 SVQRIQETYSGNGAPPGGTAGTGANEVPNYQAGANEANGN--YERTEETINNEVNRIKKN 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GIN 399 YK+ L I V+V + S Q ID + IV + + Sbjct: 358 IVESPYKIRDLGIQVMVEPPDPKDPN--SLPQQTIDDIQKILGTIVRTSIDKQYGQTLTD 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + + ++ F F + I + LV + + L + Sbjct: 416 QDIQNRVVVSVQKFNGKATFEEPKPAIPMW--------VYIVGGIGLVLLITLFILWWRS 467 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 + ++ ++ + P I T M Sbjct: 468 RKSDEEEEEEEEEIFEQPMVQEIPDIHEQETESTM------------------------- 502 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L + + + FAK+LR W E Sbjct: 503 -------RRKQLERLAKEKPDEFAKLLRTWLSEE 529 >gi|126462456|ref|YP_001043570.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] gi|126104120|gb|ABN76798.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029] Length = 570 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 116/566 (20%), Positives = 218/566 (38%), Gaps = 33/566 (5%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + +L + R + A +IL +L +A + P LY L ++ R+ Sbjct: 21 MRGMLDQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 80 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 +L+ I I + ++VP + +AR+ LAAQGLP G L + G + Sbjct: 81 IDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQ-GLPDGNALLSDLP-MGTS 138 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183 ++ +A E ++AR+I IS + AARVH+ +P+ +F + P ASV ++ + Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 198 Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239 EAI +LV+++VP + DVTV+D G+LL+ + + + L ++ Sbjct: 199 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 258 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I L G N V +++ Q+IRE DPD + + + + Sbjct: 259 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 316 Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 Q N P + + + N+E++ K T Sbjct: 317 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKIETTLPAT 376 Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++ R+S AVVV ++ A++ ++ +A G ++ RGD +TIT Sbjct: 377 ARVARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 436 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + FL+ + + A + L +V + + + Sbjct: 437 AQPFLDTVVPEASG------WSAEPWLADLARQGFLLAALAVVALGVVRPIL-----NRV 485 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 L + V G +D A + Q + + +R ++ L Sbjct: 486 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 541 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 + ++E +E R A +R+ +E++ Sbjct: 542 VIRKLVEEDEGRIATTIRQMIAAELD 567 >gi|157414615|ref|YP_001481871.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385579|gb|ABV51894.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747255|gb|ADN90525.1| Flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni M1] gi|315931604|gb|EFV10570.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 327] Length = 560 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 222/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q + RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + + +S + Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|283955204|ref|ZP_06372705.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414] gi|283793241|gb|EFC32009.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414] Length = 560 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGGNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG TS Q++ RA+EGE+ARTI+++ I A VHI P F + PTASV Sbjct: 119 -TQAFGATSEEQKVKYQRAIEGELARTIETLEPIRNAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ Sbjct: 298 EEKTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNIKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + + P + N A + + + I + Sbjct: 472 L--EDVAAQEEMQQGPSAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQ---YEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|118475241|ref|YP_891471.1| flagellar MS-ring protein [Campylobacter fetus subsp. fetus 82-40] gi|118414467|gb|ABK82887.1| flagellar M-ring protein FliF [Campylobacter fetus subsp. fetus 82-40] Length = 568 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 111/572 (19%), Positives = 229/572 (40%), Gaps = 28/572 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS------PHYDNLYVK 54 M Q + +L + ++ AS +++ + + + +S Y L+ Sbjct: 1 MDYKTLFHQVGQLYQNLTLKQKIVAASSVVIVVGFLVFLSLYKSSSSGSEYDGYSILFRN 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 L +D +I L + + +++++ G +I VP+ V K RI +A+ G+ N G+E+F Sbjct: 61 LNPADSAQIIAQLEKDGVTYKLANEG-TILVPTKSVYKERIAVASLGIMKDGKN-GFEIF 118 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 DK + FG T Q + RA++GE+++TI+ + I A V+I P F + PTAS Sbjct: 119 DKQD-FGATDNEQRVKFQRAIQGELSKTIEGLEPIEKATVYIAFPKDSVFTERQVPPTAS 177 Query: 175 VMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKS 230 V+++ K + I+ +VA +V NL DV ++ G + +E +E ++ Sbjct: 178 VVVKIKDGEKLNRKQIDGIKRIVAGSVTNLKAEDVKIVTQDGVAVGDDEIALESELVASQ 237 Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + ++ E I + F G D + V E + + + +YDP+S + Sbjct: 238 IKYKKEFENTYEQKIIDMIGKFTGGRDKVTAKVSIEFDFSVKDSQSEIYDPNSVIRSEQN 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + + + N+ V P E K +NYEI+ K I Sbjct: 298 IEEKREGKQPKEVGGVPGAVSNIGPVEGLDQNKPD--ELYTKNVANTNYEISKKIIKVKD 355 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRS------ADQGKIDSYLAEINKIVSAATGINSRRG 403 ++R++ AVVV+ E A + + +I +V G NS RG Sbjct: 356 QYATIKRVTAAVVVDGKYEREKKEDGSLSDTIAYVPLSEDEINKIKSLVEQTIGYNSTRG 415 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D +T+++ +F + N+ T ++ + + + L ++ L+V + +++ Sbjct: 416 DEVTVSNFEFKKAGNLNANTTKIGIF------YDSYLKPLTPIIKYLIVLLILFVFYKKV 469 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K E P S + + + + Sbjct: 470 ITPFLQKMVENAKDEDFEPQKEESNIEEEAEDTLEKFKAARKRVEDELGIGEDFNEDELK 529 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ ++ E + +L+ +++ + Sbjct: 530 YEVLLEKMKLIVSERSEEISTLLQGMIKNDSD 561 >gi|332799173|ref|YP_004460672.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1] gi|332696908|gb|AEE91365.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1] Length = 519 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 113/568 (19%), Positives = 221/568 (38%), Gaps = 64/568 (11%) Query: 1 MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M +L Q + S R + + + ++V I++ + ++ P Y LY L++SD Sbjct: 1 MDYFQKLKHQVVEFWQSRDRAQKVKIIVSVIVVIVILGIMLYLISRPKYVPLYTNLDISD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L + NI + + D G +I V K R+ LA +GLP S+S SG++ Sbjct: 61 AGEIVKKLDDLNISYELEDGGKTILVDPEQKYKTRLTLAQEGLPKSNS-SGFDEMFNKTR 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMI 177 G T + +++ +AL+GE+ + I+ + + +ARV+IV + F + + P+A++ + Sbjct: 120 LGTTDWERQVQYNQALQGELTKAIEMMESVESARVYIVQQEKSLFIEPDSNYEPSAAIFL 179 Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKS 230 + + I +LV +V N+ +V V+D GK L + +E ++ Sbjct: 180 EVKPGAQMTKEEIMGIINLVTYSVKNMKQENVVVVDQYGKTLSNAAISQSEDNEELINNQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVE 285 L I Q++++ ++ L G N V A+LN D + ++ ++ P + Sbjct: 240 LVIQDNFQNQLQASVQSLLEQIFGPGNVAVRVNAKLNFDKKIVQNKLFAPVNEETGEGIV 299 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 RSI+ K+ V+ N+P + + E N+EIN + Sbjct: 300 RSIQELKEHFSGTGGAYGGTPGVDSNVPGYN----QTQTGESEQQRSEVIRNFEINETNE 355 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 T +++L+++VV+N Q D+ I ++V A G + R D Sbjct: 356 NLTVAPGAVDKLTVSVVIN-------------QELNDAEKDSITQVVGNAIGYDPER-DQ 401 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 I+I M+F + +R I ++ +L + L R Sbjct: 402 ISIEGMEFKNDMAKFFADEMARQQKEQAR--MRNIKIAGLILSIILAFIIIRMFLNRRKA 459 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 I + +K ++ + + + Sbjct: 460 ISEEEKISEEMLAMQQAAATQTQDESQEIKE----------------------------S 491 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + E AK+L+ W + + Sbjct: 492 SFYDKIEKLARRKPEEVAKVLKTWLKED 519 >gi|57237369|ref|YP_178382.1| flagellar MS-ring protein [Campylobacter jejuni RM1221] gi|86153720|ref|ZP_01071923.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni HB93-13] gi|57166173|gb|AAW34952.1| flagellar M-ring protein FliF [Campylobacter jejuni RM1221] gi|85842681|gb|EAQ59893.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni HB93-13] gi|315057739|gb|ADT72068.1| Flagellar M-ring protein fliF [Campylobacter jejuni subsp. jejuni S3] Length = 560 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + + +S + Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|258514003|ref|YP_003190225.1| flagellar MS-ring protein [Desulfotomaculum acetoxidans DSM 771] gi|257777708|gb|ACV61602.1| flagellar M-ring protein FliF [Desulfotomaculum acetoxidans DSM 771] Length = 512 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 212/561 (37%), Gaps = 59/561 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + L + + SL + + + + + F+ Y L LE D Sbjct: 1 MTPRELLDRLKQRWQSLSQVKKAFVIIAGTGILAATLYLITFLTQTSYTPLMTNLEPRDA 60 Query: 61 NRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L DF+++D G++I VP V + RI LA+ G+ G+ELFD+ Sbjct: 61 GAIEEKLKSLKYEDFKLADQGTTIMVPKEQVYEIRIKLASSGV-LQGGGLGFELFDQNQ- 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G++ F Q++ RAL+ E+ RTI + + ARVH+V+P F + S+ ++ Sbjct: 119 MGVSDFEQQVDYQRALQEELRRTIIQLEEVEQARVHLVLPQKSVFVDEQEPASVSIALKL 178 Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSL 231 + + + I L ++ L + +V ++D G +L+ +E ++ K Sbjct: 179 KPLAKLKPEQVKGIADLAVGSIQGLKLENVHIIDMQGHILSDTIDTENDEDSSQVINKQQ 238 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + + + E+E I L LG D S V AE++ + Q+I + P + Sbjct: 239 QVRREYEKELEKRIQNVLDRVLGTDKAVSMVTAEMDFNKQEINTTTHGPG-------QKV 291 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + +E SQ V + ++E+ + E +NY+++T Sbjct: 292 SEQLINEKSQGTGLGGVTGTDAQNTQTYPTGTDNVESASRDESITNYQVDTTQQKVVQPP 351 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 +++LS +VVV+ + + +I +VS A G + RGD I +T++ Sbjct: 352 GTIKKLSTSVVVDGK-------------LSATRIQQIESLVSTAIGYDQARGDQINVTNI 398 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + + ++ + L+ + G ++ + + + ++ Sbjct: 399 AF-DTSYQDKMQAEMGKEETLAAQKQRQQLIYFAIAGAVIFLIMSAFLIAYMRRRRRQQQ 457 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + +SI S + + + ++ Sbjct: 458 EDTLEESIKSVQDLIEE---------------------------EQELEVKYIDVKHDQI 490 Query: 532 LHMIEINEERFAKILRKWARS 552 + + + A+IL+ W Sbjct: 491 KKLAKERPQDIAEILKIWLSE 511 >gi|86151498|ref|ZP_01069713.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 260.94] gi|85841845|gb|EAQ59092.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 260.94] Length = 560 Score = 283 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + + +S + Sbjct: 472 LE-----DVAAQEEMQQDPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|152965616|ref|YP_001361400.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216] gi|151360133|gb|ABS03136.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216] Length = 537 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 105/555 (18%), Positives = 212/555 (38%), Gaps = 33/555 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AI++ F + + ++ +V++ + + + ++P Y ++ L +D N Sbjct: 9 AIVENAKNFVSGFRTFSTGQKAVVIAVVVALLGGAVLFSRWASTPSYTPMFSNLSGADAN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + ++++DNG++I VP+ +V R+ ++ GLP+ + SGY L + Sbjct: 69 AMVEKLDADGVPYQLADNGATILVPADVVDSERLAMSGAGLPAD-TGSGYTLLTE-QKVT 126 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + FMQ+ T + L+GE+ TI+SI G+ +A V++ +P F TASV+++ Sbjct: 127 TSEFMQQKTYQKVLQGELESTIESIDGVESAVVNLAIPQKDVFLDEQDPTTASVLVKLRP 186 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 +I +LV+ V +D +V+V+D G L+ + + Sbjct: 187 GKELSNDQVTSIVNLVSGGVEGMDPANVSVVDDKGNTLS---TDGSGSSAQQEKTSDYNA 243 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298 ++ L + G N ++ V A LN D + Y P + +++ Sbjct: 244 SASADLQTFLESVYGKGNVKATVKATLNYDDKTESSTTYSQPQEIDPLAEAKTEETYEGT 303 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T + V N+ + KK E +N IN T KLE+ + Sbjct: 304 TGAAATGVLGPDNI----AVPGGDAENGGGYAKKSETNNNAINKIDTVTKQAPGKLEKQT 359 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT-SMDFLENQ 417 ++VVVN G + + +I +IV+ A GI++ RGD++++ + Sbjct: 360 VSVVVNAGAKGAA---------GAADVNQITQIVNQAAGIDATRGDSVSVVKTAFDDTAA 410 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + L++ + L A RR + Sbjct: 411 AEAAAALAAADEADQQTTLIGYAKTAALGLLVLIMLVVILVAFRRRKVETVDVLDVEPLQ 470 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + +AL+++ D + ++ ++ Sbjct: 471 LGDITGLDEELKEIAPVVERPVALEAAPVDPALEAA-----------AARRTEVVELVSR 519 Query: 538 NEERFAKILRKWARS 552 E A++LR W Sbjct: 520 QPEEVAELLRGWLAD 534 >gi|121612614|ref|YP_001000028.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004986|ref|ZP_02270744.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87250495|gb|EAQ73453.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni 81-176] Length = 560 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRVQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ V L+ Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 ++ + + + N+ V ++ K + +N E++ T Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355 Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + R S AV ++ +S LA + IV ++ RGD++ Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + ++ F + V+ + +R I + + + +L+ + Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + +AV + + +S + Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526 Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 +L ++ E A +L+ +++ E Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559 >gi|330889061|gb|EGH21722.1| flagellar MS-ring protein [Pseudomonas syringae pv. mori str. 301020] Length = 428 Score = 282 bits (722), Expect = 8e-74, Method: Composition-based stats. Identities = 95/403 (23%), Positives = 163/403 (40%), Gaps = 40/403 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D +I L Sbjct: 24 LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 84 TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303 + L LG D +++ V A ++ + ++PD RS + + + S +S Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322 Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328 N P + Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 + + N+E++ T +L RLS+AVVV+ T Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNA 425 >gi|330862343|emb|CBX72503.1| hypothetical protein YEW_GP28340 [Yersinia enterocolitica W22703] Length = 519 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 104/536 (19%), Positives = 217/536 (40%), Gaps = 31/536 (5%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 + + + + +S Y L+ E V ++ L I +RI+ + I V Sbjct: 1 MGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQVVEVLDGEAIAYRINPDNGQILV 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 + +G+A I LAA+G+ +++ +GYEL D+ G + F+Q + R+LEGE+A++I + Sbjct: 61 AENQLGRACILLAAKGI-TATLPTGYELMDQETMLGSSQFIQNVRYKRSLEGELAQSIMA 119 Query: 146 ISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 ++ + ARVH+ M + SF + + + + ++ AI LVA ++P + Sbjct: 120 LTSVDYARVHLGMSEASSFAISNRSESSASVILRLKYGQTLKADQVGAIVQLVAGSIPGM 179 Query: 203 DMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 +V V+D G+LL+ AN + + +Q E +I L++ +G +N+ Sbjct: 180 KAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAHYLQSTTEKSIANLLSSVVGANNY 239 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 R +V +L++ + Y R + + N P + Sbjct: 240 RISVATQLDLSRVEETLERY---GAEPRVSDENIQQENGNEDMAMGIPGSLSNQPAAQPK 296 Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 P ++ + + Q Y + H +KLE++++AV++NK A + Sbjct: 297 NANAPAAM---SRSQAQRKYAYDRDIRHVRHPGFKLEKMTVAVILNKSA-------PALE 346 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 L E+ +++ A GI+++RGD++T+ + F L + + R Sbjct: 347 KWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTVPTLIDEPVIAWWQDATTFRW--- 403 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + + +LL G+ L + D K + + +++ + ++ Sbjct: 404 -VEIAGIGLLSLLFLLFGVRPLMARLSRRDDKHSALAMAENIDGLNVTNTTS------ES 456 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 A S + + L + + ER A+++++W + Sbjct: 457 SATTEPMLPGSSFKEDDNLPPQGSGLEIKISHLQQLAQSETERVAEVIKQWINNNE 512 >gi|323225205|gb|EGA09449.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 366 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 13/338 (3%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSN 337 N P ++ +NT + +N Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTN 349 >gi|256833241|ref|YP_003161968.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603] gi|256686772|gb|ACV09665.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603] Length = 534 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 112/552 (20%), Positives = 217/552 (39%), Gaps = 28/552 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I + + F + + + + I+ +A + P LY L +D Sbjct: 4 QITNVFTRLFSAIREFTVAQRTLALIGLAGVIVALVALAMWATRPQMQPLYTDLAPADAA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+ + +++++ GS+I VPS V R+ +A+ G+ S S+ GY L D Sbjct: 64 AIVDQLAANGVQYQLTNGGSTILVPSGQVYDQRLKVASSGI-SPSAEGGYSLLDN-MGMT 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + F Q +T RALEGEIA+TI +++GI A V + MP+ F A PTASV ++ Sbjct: 122 SSDFQQNVTYKRALEGEIAKTITAMNGIEVASVQLAMPEDTVFVSQSADPTASVFVKPKA 181 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 AI V+AAV + + +V V+DS G++L+A G +L Q + Sbjct: 182 GVTLADDQVAAITQFVSAAVEGMKVENVAVIDSDGQVLSAMG-GSGTHGTNLKETQQYEQ 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 I ++ L LG +V AEL+ D + YD + + + T Sbjct: 241 RIAASLQGMLDRILGNGMAVVSVTAELDFDATERVSESYDSNEDALPLTERETTEEYTGT 300 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + + VP ++ N + N ++ + + R S+ Sbjct: 301 GNAAGVLG-------PDNIAVPEGQTDGNYTNTSSERNNAVDKTTERIVTAPGTVRRQSV 353 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 +V V++ + + ++ +V+AA GI+ RGDT+T+T M F + Sbjct: 354 SVAVDQQAAATIN------------INDLQAMVTAAAGIDEERGDTVTVTRMAFDDTTAQ 401 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + + + + + LV+ + L + + +V +++ Sbjct: 402 AAAEALTAAEAEAAEAAQMEMYRNLGIAAIALVSIIALSIVAAARRRRNRMPQQVEQEAL 461 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + V + L+ + + ++ + ++ + + + Sbjct: 462 DLGEVELAPVPAYNAAAELEQLEFPEMPELPAAPDDKALRAEKKRQD----VVTLADEDP 517 Query: 540 ERFAKILRKWAR 551 ++ A+IL +W Sbjct: 518 KQMAEILNEWIS 529 >gi|255523704|ref|ZP_05390670.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|296186708|ref|ZP_06855110.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|255512573|gb|EET88847.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] gi|296048745|gb|EFG88177.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7] Length = 529 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 103/566 (18%), Positives = 210/566 (37%), Gaps = 53/566 (9%) Query: 4 LDQLLQFFKSG----TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + +L Q FK+ L + + + + I + + S YD L+ + +D Sbjct: 1 MGKLSQVFKNLIEKWKGLSKKKKIAFGIIFTAVIGALIYLGIYFGSTKYDVLFSNMSSTD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L +D ++ G+SI VP V K R+ + ++ + ++ + G+EL DK Sbjct: 61 SAAVYKQLQADKVDAKVQ--GNSILVPKGQVDKLRMQMLSE-VNMTNGSQGFELLDKT-K 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T +I RAL+GE+ RTI+ + I ARV +V+PD F K +ASV ++ Sbjct: 117 LGSTDAEMKINYQRALQGELERTIKGLPEIQNARVSLVLPDDTQFVKDTQPGSASVTLQM 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---------EMERNILG 228 +A+ LV+ +V N+ +V ++D LL+ + Sbjct: 177 KQGQKLNSDQVKALVALVSGSVKNVPKENVQIIDDKLALLSKDLFNDKKDITSDSTTSAE 236 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 K + Q + E+E ++ L A G D + V A+L+ D Q YDP +S+ Sbjct: 237 KQQELKQQYEKELEKKLSNMLEAVYGKDKVKVKVNADLDFDAVQQDSTTYDP-----KSV 291 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +S+ + ++ + T + + ++ E NY+++ T Sbjct: 292 VVSEHNVKDTSTGGQGTATSSSPVDNNMTNTTTNNTGNGSSTHDESTKNYDVSEVKQKTI 351 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++RL+ +V ++ + I+ + +A G +++RGDTI + Sbjct: 352 KAPGAVKRLTASVALDGNV-------------DPTTKTSISNLAVSAIGYDAKRGDTINV 398 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F + + + T ++ ++ +++ L R ++ Sbjct: 399 EGIPFDTTLKDQAKKDLDAMNKATDQAKKTKTYIMLGILAAVILGAAVALFLWRRKKREE 458 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + + D I D + + Sbjct: 459 EEDLFDEETGGI----------------DVIVGDEMEPTKQQFKYKPVDLESENEQTHVE 502 Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554 + + + E+ A I++ W + Sbjct: 503 NEIKNYAKEKPEQVADIVKSWLAEDE 528 >gi|168187560|ref|ZP_02622195.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund] gi|169294591|gb|EDS76724.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund] Length = 522 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 109/564 (19%), Positives = 213/564 (37%), Gaps = 58/564 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I ++ L + + + + +++ I + F+N+ Y LY ++ +D Sbjct: 4 IKEKFKNLIDKFKGLTKGKKIAFSVLVVGIISGLIYLIVFLNTTKYAVLYKDMDPNDAQT 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L+E +++++ SSI VP V + R+ LA Q S + GYE+ + +SFG+ Sbjct: 64 VMNKLNEKKVEYKV--ESSSIKVPEDKVSELRLELAPQ---LKSGSKGYEILENADSFGM 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180 T +E+ ALEGE+A+ I+S+ + ++V +VMP G+F K ASV I Sbjct: 119 TDKERELNYKIALEGELAKNIKSLPEVKDSKVLLVMPQEGNFFKQAENAQASVRIEFNEG 178 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANE--MERNILGKS 230 + +AI LV +V NL +V V+ D T L + + K Sbjct: 179 KSISKEQIKAIISLVTGSVKNLKKENVKVIGVVNGQTKDLTEDLFGDEDGKDLTTVTDKQ 238 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + ++ E I L G ++AV +L+ D + V+DP++ + Sbjct: 239 NKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN-----VVR 292 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S++ ++ + V+ + + ++ ++ NYE+ T Sbjct: 293 SEETEKDTDTSKGGKVSA-GPVDNNMSNTYNNQDGNGSSTHEKTTKNYEVGKIEQKTVGA 351 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 K++++S +V +N L+ V +IN +V+ A + RGD IT+ Sbjct: 352 PGKIKKVSTSVTINDENLSPVD------------KDKINSLVAGAISYDENRGDIITVEG 399 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F E + + I + L+ G+ A R A Sbjct: 400 LKFNEINDAKAEEDAKKQAEEKKAKQKAFIYKCIGGAIVTLLLIAGVIAFIRKRKKKKAN 459 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 E+ G ++L I + D ++ + Sbjct: 460 NEEIEGINMLIDDEIDPKEELQPINFDEENENTHIE----------------------KE 497 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 + ++ +I++ W + Sbjct: 498 IKKYASEKPDQVVEIIKAWMAEDE 521 >gi|317121815|ref|YP_004101818.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM 12885] gi|315591795|gb|ADU51091.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM 12885] Length = 560 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 121/514 (23%), Positives = 206/514 (40%), Gaps = 25/514 (4%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 P ++ L+ +L+ +D I L E + ++++ G +I VP + V + R+ LAAQGLP Sbjct: 61 PRWEPLFTRLDPADAAAIVSQLEEKGVPYQLAQGGQAILVPGTEVDRLRLELAAQGLPRE 120 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 G EL D + G T F +++ VR L+GE+ARTI + G+ AARVH+V+P+ F Sbjct: 121 G-TVGLELMDSIP-MGATEFERQVQYVRGLQGELARTISRLDGVEAARVHVVLPEDSPFV 178 Query: 166 KIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---- 219 TA+V+ ++ + +I HLVA+AV L DVTV+D+TG+LL+A Sbjct: 179 GQRRPATAAVLVQLKPGASLAPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAEVPP 238 Query: 220 -NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278 + G I + + E++ ++ L LG N + V AELN D Q I ++ Sbjct: 239 EEGQGAVVQGDRFEIERRFEQELQQSLQTLLEQVLGPGNVIARVNAELNFDQQVIERHLF 298 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 P + + I S + + V V + + ++ + E +NY Sbjct: 299 QPPADGGQGILRSIQELQETFTGQGVPVGVPGDSNIPTYPQLVGGTG--QYQRTERTANY 356 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 EIN + RLS+AVVVN + + V+AA G Sbjct: 357 EINEVVDRVQVAPGAVRRLSVAVVVNG-------------DLTPQRQQALQQAVAAAIGT 403 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + +R D + + M F + + + + + V LL L + Sbjct: 404 DPQRQDQVEVVGMPF-DTSVADRLQQSLDEERQAREQARRMALLAGAAVLALLALGLLVA 462 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 RR A G + + A + + Sbjct: 463 VWRRRRAARRAAAEAQMGGLGVPVQGMPGAGGLPGAVPPAAPAGAGAVGGPAAGAAAAWA 522 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++ +++ E A+++R W Sbjct: 523 NGRAADAAAYDQVAELVKNQPEHVAQVIRSWLAE 556 >gi|313901521|ref|ZP_07834968.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM 13965] gi|313468216|gb|EFR63683.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM 13965] Length = 551 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 117/519 (22%), Positives = 204/519 (39%), Gaps = 29/519 (5%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 + P + L+ +L+ +D I+ L E I F+++ G +I VP+ V + R+ LAAQGLP Sbjct: 48 SGPQWAPLFTQLDPTDAAAIAGQLEEQGIPFQLAQGGQAILVPAEQVDRLRLDLAAQGLP 107 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 G EL + G T F +++ +R L+GE+ARTI + G+ AARVH+V P+ Sbjct: 108 RQG-TVGLELL-ENMPMGATEFERQVQYLRGLQGELARTIGRLEGVEAARVHVVRPERSP 165 Query: 164 FRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--- 218 F TA+V+ ++ + +I HLVA+AV L DVTV+D+TG+LL+ Sbjct: 166 FVSQQRPATAAVLVQLKPGAELEPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAGV 225 Query: 219 --ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 A E + G + + + E++ ++ L LG N + V AELN D Q + Sbjct: 226 ELAQEGTAVVPGDRFEVERRFEAELQRSLQTLLEQVLGPGNVIARVNAELNFDQQVVERH 285 Query: 277 VYDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 +++P D + + + V + N+P + + + E Sbjct: 286 LFEPPADGGQGILRSIQELQETFTGQPAPGGVPGDSNIP----TYPQVGGGTLDYQRSER 341 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +NYE+N + RLS+AVVVN + + V+A Sbjct: 342 TANYEVNQVVDRVQVAPGAVRRLSVAVVVNG-------------DLTPERRQALQQAVAA 388 Query: 395 ATGINSRRGDTITITSMDFLENQLF-NSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 A G + +R D + + +M F +++ + ++ L LV Sbjct: 389 AIGSDPQRQDQVEVVAMPFDTTVADRLQQSLEEERQAREATRRVALLAGAGGLALLALVL 448 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 + RRL + G + + Sbjct: 449 LVAAWRRRRLARRLLEAQAAGHGLPAVPGSTAGTVAAGPAGRGTAAVPGPGGPVPGPAGA 508 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++ +++ E A+++R W Sbjct: 509 AATGANGKAAEATVLEQVSELVKNQPEHVAQVIRSWLAE 547 >gi|327478787|gb|AEA82097.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166] Length = 558 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 104/529 (19%), Positives = 199/529 (37%), Gaps = 20/529 (3%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + ++ + L+ E + L + +RI I V + +AR+ L Sbjct: 38 FYLWRDNGSFRPLHGAGESFPAAEVMQVLDGEALQYRIHPQSGQILVREDQLARARLLLN 97 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 A+G+ + +GYELFDK G + F+Q++ R+LEGE+ART+ ++ G+ ARVH+ Sbjct: 98 AKGV-KVAQPAGYELFDKEEPLGTSQFVQDVRLKRSLEGELARTVMALKGVQQARVHLAQ 156 Query: 159 PDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + SF P+ + + + AI +LVA +VPNL DV V+D G Sbjct: 157 EENSSFVVSKRAPSKASVMLQLEPGYKLSSDQVGAIVNLVANSVPNLKPEDVGVVDQYGA 216 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 LL+ ++ V+ Q + NI + LA LG+ NFR +V A+++ ++ Sbjct: 217 LLSRGLNVGGGPAQNWQAVEDYQQKAAANIEQVLAPVLGLGNFRISVAADIDFSQKEETF 276 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD----- 330 Y R + + N P + + + Sbjct: 277 QSY---GDTPRLRNEVLRNESALDRLALGVPGSLSNRPMPPAPEGEEAQQPATENKGATS 333 Query: 331 -KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389 ++E + + + H + L + S+AVV+N E G D AE+ Sbjct: 334 LREESTRQMDYDQSVVHVRHAGFALRQQSVAVVLNSAAAPE-------GGWTDEARAELE 386 Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 +V +A G RGD ++++ + F + + + V + L+ Sbjct: 387 AMVRSAVGFKQERGDLLSLSVLPFAAVEPIEQVVPWWENSQVHALAKVGVAGLIALLLLL 446 Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 ++V + +R ++G G S P + + + Sbjct: 447 IVVRPAVRNLTQRNVAALPQREGLEGSLVEPSAPAALEGDSRPALASPREPGGPHIFGEL 506 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558 + ++ + L + + + ER +++++ W D Sbjct: 507 NPLSEIRLPAPGSGLELQIEHLQMLAKNDPERVSEVIKHWIGRNERDLN 555 >gi|310816845|ref|YP_003964809.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare Y25] gi|308755580|gb|ADO43509.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare Y25] Length = 500 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 127/546 (23%), Positives = 225/546 (41%), Gaps = 53/546 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + R +IL + L + + V P LY L+ + + A Sbjct: 1 MQNLLALWSGFSLRRRIILVAATLGIFLAVIGLARGVGRPDMALLYAGLDPAASAEVVAA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 + + + F + G +I VP++ R+ LA GLP+ + GYEL D ++ FG T+ M Sbjct: 61 VEQQRLPFEVR--GDAIYVPAASRDLLRMTLAGAGLPAPGAQ-GYELLDNLSGFGTTAQM 117 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI ++ G+ AARVHI P F++ A + A + + Sbjct: 118 FDAAYWRAKEGELARTILAVPGLQAARVHISPPAARVFQQGEPATAAVTVTMASGSASQQ 177 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+A R L+AAAVP LD G+V V+D+ L+ A + + + + + Sbjct: 178 QAQAFRSLIAAAVPGLDPGNVAVIDAKAGLIAAPDNAQLADTRQDELR--------NRVR 229 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 L A +G N + E DT+ I E DP+ +V S +S+ A+RS+ + + +V Sbjct: 230 SLLEARVGAGNAVVELAVETVTDTESIFERRLDPEGRVVVSNDVSETARRSQGN-ADGSV 288 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P + + S E+ + + +NYE++ S + RL++AV+VN+ Sbjct: 289 TVASNLPDGAANQEAGSSSSEDRESRN-VTNYELSETSREVLRAPGAVRRLTVAVLVNEP 347 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 E + L + ++V++A G ++ RGD IT+ +M F+ + + V Sbjct: 348 TGPEA------APRAPDELEALRELVASAVGFDAARGDVITLRAMPFVAPPVLGTEAVAA 401 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 ++ + L++ L L R Sbjct: 402 P---ARLFDPMQLVQFGALALVALILGLFVLRPLLRPK---------------------- 436 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 +L D F+ + + + + RL +I +E ++L Sbjct: 437 ---------PQVDSLPPLLDDSFAMAMPMADGFAALDAPDPVARLTALIADRQEDSVRLL 487 Query: 547 RKWARS 552 + W Sbjct: 488 QSWVED 493 >gi|288573030|ref|ZP_06391387.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568771|gb|EFC90328.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM 11002] Length = 497 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 112/541 (20%), Positives = 203/541 (37%), Gaps = 57/541 (10%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 ++ + +A ++ L+ LE+ D I L E I +R+ ++I + Sbjct: 1 MGIVSLVFFGLIALVVLSGRESWEPLFSGLEIQDEASIVAYLKENKIPYRLDPGANAILL 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P V + R+ LA GLP GYE+FD V G++ F Q+IT VRALEGE+ART+ Sbjct: 61 PEEHVYEVRLELARAGLPKGGVK-GYEIFDDVQ-MGMSEFQQKITYVRALEGELARTVAQ 118 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLD 203 I + A+++IV+P F + TASV++R + +AI HLV+ +V L Sbjct: 119 IDSVEYAKINIVIPQPHLFLEQQQPATASVLVRIHQGASINPEQIKAIVHLVSHSVEGLQ 178 Query: 204 MGDVTVLDSTGKLLTANEMERN----------ILGKSLSIVQAIQHEIEMNINKALAAFL 253 DVTV+D+ G +L+ + + + + + E+E + L Sbjct: 179 PDDVTVVDTDGNVLSDLIEDDMFIYSDGAGRTVSSVQRELERQQEKEMERKVRAMLERVF 238 Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G + + +L++D ++ Y P + +R ++ + S Sbjct: 239 GPGSVVVRIKVDLDLDKKRNASTQYIPGPTGKGVVRSEQNTEESYVGPGGPTGGAPGTTT 298 Query: 314 HVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 ++ + +K + +NYEI T + RL+ +V+V+ Sbjct: 299 NIPGYAIDTGAGGVGEYNKTDTVTNYEITTHESENVETPGSIRRLTASVLVDG------- 351 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432 + L +I +V+ A G++S RGD I I SM F + Sbjct: 352 ------DLSEEQLEDIRALVAPAIGLDSGRGDQIAIQSMKFSTTLADRMAEQLAAERRQK 405 Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492 T++ L+ L+ L + R+ + + S+ A+ Sbjct: 406 IVAAVTLLGILLILLALALFMWYRRRRRRKSLDAARRAEDAGQVPSLQDLLSSPGAMEAQ 465 Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++ + N E FA +R+W Sbjct: 466 G-----------------------------ELAVLEEQIRNYALNNPEEFAAFIREWIVE 496 Query: 553 E 553 + Sbjct: 497 D 497 >gi|217076889|ref|YP_002334605.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B] gi|217036742|gb|ACJ75264.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B] Length = 534 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 105/559 (18%), Positives = 208/559 (37%), Gaps = 42/559 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 LD +F L + + + + S+++ ++ + +N+P Y L +D Sbjct: 7 FLDSFSKFPDFWKGLKKNQKITMLSLLVAILIAVVLTVI-LNAPKYVLLISANNETDAGA 65 Query: 63 ISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L I +++ G+ I +PSS V + R+ LA+ SS+ G+EL D+ +SFG Sbjct: 66 IIQQLEAQGIPYKVEA-GNRIFIPSSYNVYEVRMKLASS-GALGSSSKGFELLDQ-SSFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIR 178 TSF +++ RAL+GE+ RTI +I+G+ ARVH+ +P + + R + +++ Sbjct: 123 ATSFDKQVNYQRALQGELERTIATINGVKFARVHLTLPKYTYYVRGEMAETRASVQLVLD 182 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQ 235 + + I +L+ AV L +V V+D+ G+ L+ + + + Sbjct: 183 PGVSLSKEQIKGIIYLLTGAVEGLKPENVKVVDNYGRALSDLVNFDDNTVAASTKVELKM 242 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + I AL G +LN + Y + ++ + Sbjct: 243 QLESYYKKKIQPALETVFGFGTVEVIPDVKLNWQKAEKTITTYSTPKGGLIRSQETESEK 302 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YKL 354 + V E N+P + + +K + +NYE+N +N ++ Sbjct: 303 STTAPADGGPVGTESNIPTTYYQSIEGSSVTL-YEKNHQITNYELNQIVENIVQNNEGEI 361 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E +S++V+++ EINK+VS + + + S Sbjct: 362 ENISLSVIIDSSSTV----------FNKISKEEINKMVSDVIEKSIAANSSPSAISYSLA 411 Query: 415 ENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + S ++ ++ A + L+ T+LV F L +L + K Sbjct: 412 FIPFSREMEEEFSKIIEQQTKQKEFFYKATLLLIATILVFFGTYGFLLQLKKVKSRKLVL 471 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 K + TG ++ V ++ Sbjct: 472 QRYKMLEEEVQKVMEEKTGEEAEQILSEAQ------------------KVIEELRNYAKQ 513 Query: 534 MIEINEERFAKILRKWARS 552 + + E A I++ W Sbjct: 514 LAVKSPEEVASIIKIWISE 532 >gi|163789650|ref|ZP_02184088.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7] gi|159875182|gb|EDP69248.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7] Length = 524 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 109/564 (19%), Positives = 220/564 (39%), Gaps = 51/564 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M I T+LG+++ + L V+ I + A ++ Y L+ LE +D Sbjct: 1 MDGIKKIWTGIKDGWTNLGKSKRIGLVMVLFFVISIVTAMTYYTQKVEYATLFSNLEEAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I + ID+++ DNG++I + + V RI LA L S +G+E+FD+ + Sbjct: 61 AGTIVNDIKTKGIDYKLEDNGTTILIDQAQVDAYRIELAVNDL-LPKSTTGFEIFDETSM 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177 T ++I RA+ GE+ R+I ++ I A+V + +P+ F + ++ +ASV++ Sbjct: 120 M-ATDEDRKIMYQRAVTGELERSISALDSIEEAKVMLSLPEDSVFTSEENQSKASASVVL 178 Query: 178 RA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGK 229 + + + I L++ AV NL ++ ++D+ G LL+ + +++ K Sbjct: 179 TPLSGSQIPANAVQGIASLISGAVDNLPKENIKIVDTAGNLLSVALEDEVNLNATDLVSK 238 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 +I + + ++E + + L G+D AV A++N D+ + + + RS Sbjct: 239 YQAITNSYEQQLEQKLLQTLGPIYGIDKLTVAVNADMNFDSSE--SEIINYGDSSVRSET 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +S + VE+ + + +NYE+N+++ T Sbjct: 297 VS---------AGGKTIGVEEGEGFDNAINQVTSGEEGGNSTYDRTTNYELNSETTNTIK 347 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++ERLS +V+ + + + IV+A G + R D I+I Sbjct: 348 APGEVERLSTSVIFDGN-------------LSPADKESLEAIVAATVGTVAEREDVISIQ 394 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 +DF + T + LV + L+V + L L R Sbjct: 395 GIDFATSTEVVEPTAPEQLKSSIRDTLLRYWPYLVGGLVLLIVMIVLLRMLLRNRK---- 450 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 ++ + Q +L+ +N + + Sbjct: 451 ---------DDELDFFDEEEPEPIVQPMRPVQPTDEQKKAKEKADLKRELN-KNMSEKET 500 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 + + + E A +++ W + E Sbjct: 501 TVREYAKESPEGAADLIKIWMKDE 524 >gi|322432996|ref|YP_004210245.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9] gi|321165223|gb|ADW70927.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9] Length = 525 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 117/562 (20%), Positives = 226/562 (40%), Gaps = 44/562 (7%) Query: 1 MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 MA DQ +Q + + +++ L L + L + +P Y L LE +D Sbjct: 1 MAGFDQIFVQAKQFWATRTQSQRLFLGVGAAATVGLLALFANLMVTPDYKPLISGLESAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 IS L+ I F++S +G SISVP+ V AR+ +A+ S G+E+FDKV+ Sbjct: 61 AQAISADLTAKKIPFQLSPDGKSISVPADQVDAARLDVASNQSTHSG-RLGFEIFDKVS- 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 +G T F +++ RALEGE+ RTI ++ G+ +ARVH+VM F ASV ++ Sbjct: 119 WGQTEFDEKVNYQRALEGELERTIVTLGGVKSARVHLVMATDSVFLDREKSAKASVTLKL 178 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +I+ LV+ AV L DV+++D+ G + + Sbjct: 179 NRGGLSHDETASIQRLVSGAVEGLKPTDVSIIDADSN------QSMGAAGDGAMGEEGAE 232 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++ + L +G D+ R++V E + T + + YDP V +I+ S ++ + Sbjct: 233 RQLTQRLMATLTPVVGGDHLRASVNVEYDPGTTEENQEKYDPAVSVPLTIQRSDESTGAG 292 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 T N+P P K E + Y +N + + +++R++ Sbjct: 293 AGVGGVPGTT-SNVPQNKANVPPPVGEDSAQVSKTENATYGVNKITRHSLEPAGRIKRIT 351 Query: 359 IAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 A+VV+ + L +I + A G+++ RGD I++ ++ F Sbjct: 352 AALVVDDSVKRKLGANGKWTEIRTKRSPQELKQIETLAQNAIGLDTTRGDVISVENLAFD 411 Query: 415 ENQLFN-SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + + F++V+ + L+ +L L + +++ + + Sbjct: 412 RPDEPDVAPVTALDRARKGVSDFSSVVRYAMLLILFVLAYVLMIRPVQKKVLAVSVQLPQ 471 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ A +T + + +++ Sbjct: 472 QPLLPEMAAALPLLAPSTSMARALAL----------------------------KEQVVQ 503 Query: 534 MIEINEERFAKILRKWARSEIE 555 ++ E A++++ W R E E Sbjct: 504 QVKSEPEGSARVVQAWLRGEAE 525 >gi|312621568|ref|YP_004023181.1| flagellar m-ring protein flif [Caldicellulosiruptor kronotskyensis 2002] gi|312202035|gb|ADQ45362.1| flagellar M-ring protein FliF [Caldicellulosiruptor kronotskyensis 2002] Length = 560 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 108/569 (18%), Positives = 221/569 (38%), Gaps = 29/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + +SL +++ ++ + ++ + A + PHY ++ L+ + Sbjct: 5 LNDYLKNIKEKWSSLSKSQKIMFVVSSSIILLSVIVAIYITTRPHYVTIFSGLDPKEAAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I LS+ ID + ++ G++I V V +A++ A G P +SS + + +S Sbjct: 65 IQNILSDQKIDSKAANGGTTILVRDKDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI + ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TETDKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L+ N + + K L + A Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE I + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 245 KNEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S S + N + + K +E NY+ N K I T Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406 + + V+ T+ ++Q K S+ + + I Sbjct: 365 TINYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETII 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R ++ + + LL+ L + + Sbjct: 425 NLIKSATGIQNVTVEGYEIPTFVDKPQRQIP--VDYIYVALAFLLLMVFAASVLIK-ASR 481 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 +K E+ G L L + + + + Q Sbjct: 482 SKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI----------NVEEFGVSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +++ E A++LR W + E Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|148554208|ref|YP_001261790.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1] gi|148499398|gb|ABQ67652.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1] Length = 578 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 109/565 (19%), Positives = 217/565 (38%), Gaps = 35/565 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 +L+ K T + + +L + ++ +L+ + +D ++ A Sbjct: 28 VLERIKDFTGQPAVQRSLPMIGLLGLLGGAALLWSTMSGAPQRDLFAGMGDADKAAVAEA 87 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L ANI ++I +++VP + +A++ LA QGLP S+ + + G + + Sbjct: 88 LKTANIPYQIDRGTGALTVPETSFYQAKMLLAQQGLPKSAPDG--DALISSLPLGASRAV 145 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184 + A E ++ARTI++I + +A+VH+ F + A+P ASVM+R Sbjct: 146 EGEKLRTAREMDLARTIEAIDAVESAKVHVAAEQPSVFLRDEAKPQASVMLRLRAGRALA 205 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242 +AI HLVA++VPNL V+++D G+LL+A+ + + + I I+ Sbjct: 206 DSQVQAIVHLVASSVPNLTPDGVSIVDQAGRLLSASGGDPMSQASTRQVDIQNKIEQRYL 265 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 + K L +G NF + V A+++ Q Y D+ V R + S + + + Sbjct: 266 DALTKILTPIVGPGNFTAEVHADVDFTETQATRESYPKDTAVVRQEQGSWTGDK-KDGEA 324 Query: 303 ESAVTVEQNMPHVSDRKVPLPR-------------SLENTDKKEEQSNYEINTKSIATTH 349 N P + + P + + YE+ + T Sbjct: 325 TGIPGALSNQPPAASQVAAAPNQTVAAPTAGTTDAANAGKTSENYNRTYELGREVSVTRA 384 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RLS+AV + +G + LA I +V A G + RGD + ++ Sbjct: 385 PIGTVKRLSVAVALREGSRK----------FSRAELASIETLVRGAIGADQARGDVVALS 434 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F + V+ ++ D + +T+ L L+ L+ F L + Sbjct: 435 ARSF---AVAEDAEVKPNWWD--APWVSTLARNLSALLVVALLVFGVAKPLLKRRAAYIE 489 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 +K S + + + + L + Sbjct: 490 EKKAALDAMAASGGRLPQGTNPSIRAEIASEMAQQALIDPNKPVTLDMIEATPGYANRAE 549 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + + + + +R A ++R R+++ Sbjct: 550 LIRNFVRQDPDRAALVVRDLIRADM 574 >gi|27904573|ref|NP_777699.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38257545|sp|Q89B00|FLIF_BUCBP RecName: Full=Flagellar M-ring protein gi|27903970|gb|AAO26804.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 555 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 119/579 (20%), Positives = 218/579 (37%), Gaps = 80/579 (13%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 ++L ++L ++ I L + FF +Y LY L D I L Sbjct: 18 RNFFSNLSLNVRVLL---LVFLITLIVFYIFFFKPLNYSILYNNLSNDDEKSIVSRLISL 74 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I F+ + N S + +PS+ + K + LA QGLP G+EL D FGL+ F +E+ Sbjct: 75 KIPFKFNQNHSELLIPSNALKKVYLDLAEQGLPKEK-KVGFELLD-TEKFGLSQFNEEVN 132 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSA 188 RALEGE+AR+IQ + I ARVHIV+ F + P+ASV++ + Y Sbjct: 133 YERALEGELARSIQKLENIKTARVHIVLSKSSVFIREKKIPSASVILEIKPGRYLNYNQI 192 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNIN 246 +I H+VA V NL + ++T++D G LL++ + L I+ + I Sbjct: 193 NSILHIVAQGVSNLQIENITIVDQFGNLLSSMNDLYNDSYSNNQLKYSNEIETGYKNKIE 252 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS----------KDAQR 296 L +GV+N + V A+++ D Q+ E + P+ E+ S + Sbjct: 253 SVLVPLVGVNNIHAQVTAQISFDKQENSEERFTPNYSNEKQSVRSVQNKKNIEFSEKYSD 312 Query: 297 SETSQPESAVTVE--------------QNMPHVSDRKVPLPRSL----------ENTDKK 332 + S + ++ + N+P+ S++ S +++ + Sbjct: 313 NSFSSNQGVLSNKKLNDLSNSSLLFNHNNIPNFSEQVSSTKNSKRNLSDESVIPQSSTNQ 372 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 NYE++ + ++RLS+AVV+N + L I K+V Sbjct: 373 NYIVNYELDHVISHNKFNVGNVKRLSVAVVINYVK----DKHGKFVSLSTDKLNSIKKLV 428 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 + G + +RGD++++ + F +++ I + + ++ L+ Sbjct: 429 CESVGFSRKRGDSVSVVNFKFSTPEVYFQSPPSNYNKYISFNNLFEFFLICLGVIILCLL 488 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 N + + Sbjct: 489 IIKLNFLKILFKNKKRI---------------------------------DISNNYAVKD 515 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 K+ +L ++E + + A ++RKW Sbjct: 516 NLTSQNKGVEDDKELKKKLSSVLESDPKEIAMVIRKWIS 554 >gi|284041509|ref|YP_003391849.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684] gi|283945730|gb|ADB48474.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684] Length = 505 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 112/544 (20%), Positives = 206/544 (37%), Gaps = 49/544 (9%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 +L ++LA L +++ +P Y L ++ D ++ AL E I Sbjct: 7 LANLSTRGKIVLAGGALAIVVVLFFLFQIATAPSYTTLLTGMDPKDTGEVTAALDERGIA 66 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + + +NG++++V +ARI LA GLP ++N GY++ D G ++F Q + R Sbjct: 67 YELQNNGTALAVQKGQTAQARIALAGAGLP-GNTNDGYKILD-DQKMGTSNFQQNVNYQR 124 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDM--GSFRKIGARPTASVMIRAINPSVYKSAEAI 191 ALEGEI TI+ + G+ +A+V +V+PD F + TA+V++ + I Sbjct: 125 ALEGEIGTTIEEVDGVSSAQVQLVLPDREAQLFAENVNPATAAVLLSGASTLDEGQVRGI 184 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249 LV +VP L VT+ DS+G +L + G + + NI L Sbjct: 185 AQLVTNSVPGLKSEKVTITDSSGTMLWPTATSGSSSGLLAKQAAEARYNQQTATNITAML 244 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 A +G D + V A+L+ + + + S R ++ S + Sbjct: 245 ARTVGPDKVQVQVKADLDANEATQ-DRLVYGRDGTPLSNRAERETLVSRGGRAGGPAGTA 303 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 N P V + + ++ E N +N T + R +AV+V+ Sbjct: 304 GNNPPVYAGQAGGDS---DYRRESEDENLAVNKTVTRTRIAPGAVNRQQVAVLVDDSV-- 358 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429 + L +I V +A GI+ RGD +T+ S+ F E + + Sbjct: 359 -----------PAAMLPQIRDAVMSAAGIDEDRGDVLTLGSIPFAELPRPAASSPVDDIW 407 Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489 D + + L+ L LR+ N A + + Sbjct: 408 D--------YARYALLGMAALVFLALVARQLRKRENETLAGEPTWLREIESPRTLAELER 459 Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 + + S ++ + +++ ++E + ER A+ +R W Sbjct: 460 FEEPVAPTQVLPLRSPENA------------------ARMQVEELVERDPERVAQHVRAW 501 Query: 550 ARSE 553 + + Sbjct: 502 MQED 505 >gi|241761170|ref|ZP_04759259.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374789|gb|EER64250.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 619 Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 110/614 (17%), Positives = 227/614 (36%), Gaps = 81/614 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++++ + K + + ++ + F +++P +LY +D Sbjct: 32 DRVNKVYERVKDFVQQPAIKRSLPLMRLISLTAIGALIWFLLSAPPQRDLYPGAGDADRA 91 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ AL I + I+ I+V KAR+ LA QGLP S+ + + + G Sbjct: 92 SIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDHVI--SSLPLG 149 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 + ++ A E ++ARTI++I + ARVHI P F + TASVM++ Sbjct: 150 ASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238 +AI++LVAA++P + V+V+D G LL+A + +I + L + Q ++ Sbjct: 210 GRNLSNAQVQAIQNLVAASLPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTLE 269 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +NK L LG +N+ + V +L+ Q Y + + + Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327 Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320 Q NMP Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387 Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + + YE+ + + ++R+S+A+ + + Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 ++ +L+R+ + LV L++ L+ + ++ L I + Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + G P + + D+ + ++R++ + H ++ + R A ++ Sbjct: 554 LIAEGEQPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604 Query: 548 KWARSEIEDRYTQH 561 RS+++ + Sbjct: 605 DMMRSDLKSLENHN 618 >gi|254487125|ref|ZP_05100330.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101] gi|214043994|gb|EEB84632.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101] Length = 422 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 111/412 (26%), Positives = 184/412 (44%), Gaps = 10/412 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + QF L R L + + L +A V SP LY LE + A Sbjct: 5 VQQFLNIWAGLTFRRQLTIVAATLAMFFGVLAMSKMVASPTLTLLYAGLESGAAGDVVRA 64 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + + + + G SI V + + R+ LA++GLP++ N GYEL D + FG TS M Sbjct: 65 LEQRGVVYEVR--GGSIFVDAKARDELRLTLASEGLPANG-NRGYELLDNLTGFGTTSQM 121 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + RA EGE+ARTI + I ARVHI F++ + + Sbjct: 122 FDAAYWRAKEGELARTIVANPQISMARVHIAGTGSNPFQRGVVPKASVSLTPNGGEISAA 181 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 A+A+R LVA+AV L DV V+D+ G L+ +++ + + Sbjct: 182 EAKAVRFLVASAVAGLSPDDVAVIDANGSLIGSSDDAMPTSQG-----DDKAEMFKEKVQ 236 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 + L A +G+ N V + +++ +RE +DP+ +V S ++ S + V Sbjct: 237 RILEARVGLGNAIVEVSVDTETESESVRERRFDPEGRVAISTDT-EERSNSSSDAGSGDV 295 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 TV N+P + + S + + E+ NYE++ ++R+++AV++N Sbjct: 296 TVASNLPSNNGQ-PGGDSSSSSNSETRERVNYEVSETEREIVRAPGAVKRITVAVLINDA 354 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 T+ G Q + D+ L + ++VS+A G ++ RGD ITI SM Sbjct: 355 IATDESGVETSQPRDDTELEALRELVSSAVGFDAERGDIITIKSMALQSIPP 406 >gi|312876496|ref|ZP_07736479.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus 6A] gi|311796707|gb|EFR13053.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus 6A] Length = 560 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 110/569 (19%), Positives = 221/569 (38%), Gaps = 29/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + +SL +++ ++L + ++ +AA + PHY ++ L+ + Sbjct: 5 LNDFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I LSE ID + ++ G++I V + V +A++ A G P +SS + + +S Sbjct: 65 IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TEADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L+ N + + K L + A Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S S + N + + K +E NY+ N K I T Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406 + + + V+ T+ +DQ K S+ + + + Sbjct: 365 TINYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIV 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R + L+ L Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDKPQRQIPVDYIYIALAFLLLMAFAASLLIKATRSKP 484 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + VG I P + + G+ ++ N + + Q Sbjct: 485 RRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEIN-------------VEEFGVSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +++ E A++LR W + E Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|312126819|ref|YP_003991693.1| flagellar m-ring protein flif [Caldicellulosiruptor hydrothermalis 108] gi|311776838|gb|ADQ06324.1| flagellar M-ring protein FliF [Caldicellulosiruptor hydrothermalis 108] Length = 560 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 108/569 (18%), Positives = 224/569 (39%), Gaps = 29/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + +SL +++ ++L + ++ +AA + PHY ++ L+ + Sbjct: 5 LNDFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I LSE ID + ++ G++I V + V +A++ A G P +SS + + +S Sbjct: 65 IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI + ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TEADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEATKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L++N + + K L + A Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQLKIAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S S + N + + K +E NY+ N K I T Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406 + + V+ T+ +DQ K S+ + + + Sbjct: 365 TINYDKSSIAVVLYRYVTYTQEDFEKSDQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIV 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R ++ + + LL+ L + + Sbjct: 425 NLIKSATGIQNVTVEGYEIPTFVDKPQRQIP--VDYIYVALAFLLLMVFAASLLIK-ASK 481 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + E+ G + L + + + + Q Sbjct: 482 SKPRTVELAGVGPVEISEEKPVAEEILQEAEKRKKAEVEEI----------NVEEFGVSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +++ E A++LR W + E Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|262166236|ref|ZP_06033973.1| flagellar M-ring protein FliF [Vibrio mimicus VM223] gi|262025952|gb|EEY44620.1| flagellar M-ring protein FliF [Vibrio mimicus VM223] Length = 510 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 97/526 (18%), Positives = 201/526 (38%), Gaps = 30/526 (5%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 F+V P L E ++ + L + +++ +G++I VP S ++ + Sbjct: 2 LFFWVREPDMRPL-GAYETEELIPVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMV 58 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GL + +G E+ + FG++ +++ + E ++A+ I+ + I ARV + + Sbjct: 59 RAGL-NQERQAGDEILMQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLAL 117 Query: 159 PDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 P F + +ASV + R + +A+ +VA+AVP + VTV D G+L Sbjct: 118 PKQSVFVRQNQEASASVFLSLRTGANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRL 177 Query: 217 LTANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 L++ + + Q E + I+ L LG+ N+ + V EL+ + Sbjct: 178 LSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQT 237 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-------LPRSLE 327 V+DP++ RS +D + N P + Sbjct: 238 RKVFDPNTPATRSEYTLEDYNNG--NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQ 295 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386 + KE N+E++T + + R ++AV V + + G ++ L Sbjct: 296 GSVHKEATRNFELDTTISHERKQSGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEADLN 355 Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446 I +I+ G + RGD + + SM F E ++ V + + + +ALV + Sbjct: 356 SIRQILIGTVGYSENRGDLLNVLSMPFAEPEVEQIADVPIWEHPNFNDWIRWLASALVII 415 Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506 + L+ L A+++L N ++ G + G + + + Sbjct: 416 IVVLV---LVRPAMKKLINPAADSDDQMYGPDGMPIGADGETSLIGSDIDSGELFEFGSG 472 Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 N + + + ++ E A++++ W ++ Sbjct: 473 IDLP---------NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 509 >gi|15642994|ref|NP_228036.1| flagellar M-ring protein [Thermotoga maritima MSB8] gi|4980719|gb|AAD35313.1|AE001706_12 flagellar M-ring protein [Thermotoga maritima MSB8] Length = 532 Score = 276 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 98/502 (19%), Positives = 202/502 (40%), Gaps = 28/502 (5%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M I+++L +K S+ R R ++ + + ++ + + PHY L L Sbjct: 1 MNIVERLRDLWKKIVDLWNSMPRERKFLVGGIGIALVIAIVLFAVVASVPHYRLLVSGLN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + I L E N+ +++S G I VP S V + R+ LA++G+ SS G+ + Sbjct: 61 EDEAGVIIQKLEEMNVPYKVSP-GGDIYVPDSYNVYELRMKLASEGV-LGSSRKGFSILS 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPT 172 + + FG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + R + Sbjct: 119 ENS-FGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177 Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229 V++ + I LV+ AV L +V V+D+ + L+ + + Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L + Q ++ E I KAL + G +N + Y+ ++ E +R Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297 Query: 290 LSKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + P + N+P ++ V + ++ +NYE+N Sbjct: 298 SQETQVEKSQNLPPTGGPAGTDSNIPPLTYPSVTSEGTS-TYERTHTITNYELNEVYQKI 356 Query: 348 THD-NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405 + ++ LS+AV++ S+ + + IN +V G I S + Sbjct: 357 IQNREGEISSLSVAVII--------DASSSVLQNSSDWSSVINDLVEKGVGSITSSASLS 408 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + + F + + ++ ++ R + + T ++ +L + +RR+ Sbjct: 409 VAVAFLPFDR-SIERALQEELKQIETRRRFVLYSVGIALLGFLTFMLIYLMIVQIRRIRA 467 Query: 466 IDDAKKGEVGGKSILSPPPISS 487 A++ + + Sbjct: 468 RKLAEERRRKLEEEVKEILQEE 489 >gi|295696113|ref|YP_003589351.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912] gi|295411715|gb|ADG06207.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912] Length = 506 Score = 276 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 107/558 (19%), Positives = 186/558 (33%), Gaps = 71/558 (12%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L Q L R L + ++L +A ++ +P Y +Y L+ ++ Sbjct: 9 LEQARTMWRGLDPKRRRWLIAGAAAGLVLLVALSWYALAPRYVVIYQNLDAKAAGEVTNK 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E I +R S G + VP +AR+ LA GLP S +LF N G++ Sbjct: 69 LDELKIPYRTS--GGQVMVPEQDADRARMQLAIAGLPKSGYVGYEDLFGNTNIGGMSDNE 126 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIRAINPS 183 + + ALEG +A TI+ I G+ +VH+VMP+ F + A+ + + I Sbjct: 127 FNVKSLMALEGSLAGTIRQIDGVEDVQVHLVMPEQHMFVEQPVGQAKASVFLKIAPGAQL 186 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHE 240 I+ LV+ +V L+ DV V+D G L E + + I + + Sbjct: 187 GPDQVAGIQQLVSHSVKGLNATDVAVVDQNGVRLDHPEDAGTAVSNADRQILIQKQYEQL 246 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRS 297 I + AL LG N A LN D + + P + V S++ S + Sbjct: 247 ISDRLQSALGRILGPGNVVVLANARLNFDQVKSTQSDVRPVVGQNGVPVSVQKSTKSATG 306 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 M + D+ ++ NYE++ + L+ L Sbjct: 307 TGVGGVPGTATAGGMATGAPPTYQGATGNGTYDESQQTINYEVSKIVTERVGQPFTLQDL 366 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI--NSRRGDTITITSMDFLE 415 +++V+VN + +I V A G + + +T+T M F Sbjct: 367 TVSVLVNGQP-------------TPLQVQQIRNYVLTAVGYPNDGTQDQKVTVTGMPFQT 413 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 Q + + A ++ AL+R + Sbjct: 414 AQSAPQVAWWARYGWAIGAFAAVAAAIGIW------------FALKRRRMAE-------- 453 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 I + +L ++Q + + Sbjct: 454 -------------------------EGLPEPVIPAPRPSLFEESELPEAEQRRREVEQLA 488 Query: 536 EINEERFAKILRKWARSE 553 + FA++LR W E Sbjct: 489 RTRPQEFAELLRTWLAEE 506 >gi|283856295|ref|YP_162369.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ZM4] gi|283775291|gb|AAV89258.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis ZM4] Length = 619 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 111/614 (18%), Positives = 227/614 (36%), Gaps = 81/614 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++++ + K + + ++ + F +++P +LY +D Sbjct: 32 DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRA 91 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ AL I + I+ I+V KAR+ LA QGLP S+ + + + G Sbjct: 92 SIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDHVI--SSLPLG 149 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 + ++ A E ++ARTI++I + ARVHI P F + TASVM++ Sbjct: 150 ASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238 +AI++LVAA+VP + V+V+D G LL+A + +I + L + Q ++ Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +NK L LG +N+ + V +L+ Q Y + + + Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327 Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320 Q NMP Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387 Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + + YE+ + + ++R+S+A+ + + Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 ++ +L+R+ + LV L++ L+ + ++ L I + Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + G P + + D+ + ++R++ + H ++ + R A ++ Sbjct: 554 LIAEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604 Query: 548 KWARSEIEDRYTQH 561 RS+++ + Sbjct: 605 DMMRSDLKSLENHN 618 >gi|260752868|ref|YP_003225761.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552231|gb|ACV75177.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 619 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 110/614 (17%), Positives = 227/614 (36%), Gaps = 81/614 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++++ + K + + ++ + F +++P +LY +D Sbjct: 32 DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRA 91 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ AL I + I+ I+V KAR+ LA QGLP S+ + + + G Sbjct: 92 SIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDHVI--SSLPLG 149 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 + ++ A E ++ARTI++I + ARVHI P F + TASVM++ Sbjct: 150 ASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238 +AI++LVAA+VP + V+V+D G LL+A + +I + L + Q ++ Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +NK L LG +N+ + V +L+ Q Y + + + Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327 Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320 Q NMP Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387 Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + + YE+ + + ++R+++A+ + + Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVTVAIALRQIN 447 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 ++ +L+R+ + LV L++ L+ + ++ L I + Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + G P + + D+ + ++R++ + H ++ + R A ++ Sbjct: 554 LIAEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604 Query: 548 KWARSEIEDRYTQH 561 RS+++ + Sbjct: 605 DMMRSDLKSLENHN 618 >gi|188589083|ref|YP_001920202.1| flagellar MS-ring protein [Clostridium botulinum E3 str. Alaska E43] gi|188499364|gb|ACD52500.1| flagellar M-ring protein FliF [Clostridium botulinum E3 str. Alaska E43] Length = 520 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 117/565 (20%), Positives = 223/565 (39%), Gaps = 57/565 (10%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M +L+++ ++ S + + + + I+ ++ + +S Y L+ L+ D Sbjct: 1 MNKLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIISTMIYTSSNKYQVLFSNLDPKD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L+E + +I G +I VP+ V + R+ LA + S +SGYEL D +S Sbjct: 61 AQTILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSS 115 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--I 177 FG+T ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + Sbjct: 116 FGMTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLEL 175 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKS 230 + + ++I LV+ + N+ ++ V+D LLTAN + L K Sbjct: 176 KTGSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEVMSSESLDKQ 235 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 S+ + + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + Sbjct: 236 YSLEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQT 294 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ + S V+ N+ S+ + N+ ++E+++NYEI Sbjct: 295 IKEVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISA 351 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++R++ +VVV+ + I VS A G NS RGD I++ Sbjct: 352 PGEVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLG 398 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 M+F + ++ + +F + + + I A Sbjct: 399 MNFDPSLKEDAQSQVDAFNAEAKQKEM------------------------QKYMIMGAI 434 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL- 529 I+ ++ LD D + K Sbjct: 435 ALIAIIIVIVILVKKRRKNAADEYDDETQLLDVVIGDEKEAEIFEPIEFETKNEKTHMEN 494 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + E+ +I++ W + Sbjct: 495 EIKKYATDKPEQVVEIIKSWLSEDE 519 >gi|312792647|ref|YP_004025570.1| flagellar m-ring protein flif [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179787|gb|ADQ39957.1| flagellar M-ring protein FliF [Caldicellulosiruptor kristjanssonii 177R1B] Length = 560 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 110/569 (19%), Positives = 220/569 (38%), Gaps = 29/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + +SL ++ ++L + ++ +AA + PHY ++ L+ + Sbjct: 5 LNDFLKNIKEKWSSLSNSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I LSE ID + ++ G++I V + V +A++ A G P +SS + + +S Sbjct: 65 IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TEADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L+ N + + K L + A Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S S + N + + K +E NY+ N K I T Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406 + + + V+ T+ +DQ K S+ + + + Sbjct: 365 TINYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIV 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R + L+ L Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDKPQRQIPVDYIYIALAFLLLMAFAASLLIKATRSKP 484 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + VG I P + + G+ ++ N + + Q Sbjct: 485 RRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEIN-------------VEEFGVSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +++ E A++LR W + E Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|114566385|ref|YP_753539.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337320|gb|ABI68168.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 540 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 120/565 (21%), Positives = 226/565 (40%), Gaps = 46/565 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVN 61 + + + S ++ + ++ IL+ + + + Y+ LY +L+ D + Sbjct: 8 LKETAGRVAGSWQNMNLNQKVLAGGGILLILAAAIILVISSSRDTAYEVLYTELDKKDAS 67 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I+ L E + +++ + G++I VP + K R+ LA++ LP +G+ELF + + FG Sbjct: 68 QITAKLDEGKVPYKLENGGTTILVPPDLKDKTRLTLASENLPR--GETGFELF-QESKFG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T +++ AL+GE+AR+IQS+ + AA+V++ +P+ F P ASV++ Sbjct: 125 ETQVDKKVKYQVALQGELARSIQSLDKVKAAKVNLALPESTLFSDNEELPKASVVVNTRE 184 Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIV 234 K + I +LVA +V L +V ++D G L++ AN + +++ Sbjct: 185 EEKLSPKEIQGIINLVANSVDKLTTENVVIVDQHGNLVSENLPMANGDISETVKWQMAMK 244 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSK 292 + + E + I L LG +N V AEL+ D ++ ++ +D RS + K Sbjct: 245 RQYEKEKQDAIQSMLDKSLGQNNSVVRVNAELDFDNKEQKDELYSHDDAGPFVRSEEIKK 304 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 ++ T + N+P + S DK + NYEIN T Sbjct: 305 ESGTDTTQPVVGVPGTDTNIPQYQEVDAAGGVST--YDKSSKIRNYEINKTEKVTKVAQG 362 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT----I 408 ++ + V V ++ + +A I IV+ A G+ R D Sbjct: 363 DVKYDYLTVAV--LVNSKATEPLKLGETEEEKIATIRNIVATACGLRENRKDESVRLEDN 420 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 S+ F++ MD + R T L FLV +++ L R ++ Sbjct: 421 ISVAFVDFYTEPQAEAPGGTMDQIMRSPLT-PWLLAFLVVLIILLAWWLMQRRERRRAEE 479 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + I + + TGL P + ++ Sbjct: 480 EAEEAGIDTLIQEEIRVEDLIETGLSPEE------------------------KERRKIR 515 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 + +I N E A++L+ W E Sbjct: 516 EEIDRIINENPEIAAQVLKTWLAEE 540 >gi|237666941|ref|ZP_04526926.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658140|gb|EEP55695.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E BL5262] Length = 520 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 107/561 (19%), Positives = 223/561 (39%), Gaps = 54/561 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L+++ + F+ S + + + + I ++ ++A F+ S Y L+ L+ +D Sbjct: 4 LLEKVKELFEKFKSQNKKIKIAVIASIAAVLIAIVSAVFYSTSNKYAVLFSNLDTTDAKT 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L+ ++ +I + ++I VP + V K ++ LA S ++GYEL D+ +SFG+ Sbjct: 64 VVDRLTTEKVESKIDSSTNTIWVPKNQVDKLKLELAPD---LKSGSTGYELMDEQSSFGM 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180 T ++ + R LEGEI + I+S+ I A+V+I D F K A +A+V I+ Sbjct: 121 TDEEFKLKKKRMLEGEIEKVIKSLEPIENAKVNITEADNSVFVKDKAVGSAAVTIKLKEG 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSI 233 +AI +V+ ++ N+ +VTV+D LLT + + + K Sbjct: 181 ATLTDDQVKAIVAVVSTSIENVPKENVTVIDQNSNLLTRDLNEEANGQASSETISKQHRA 240 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + ++ +I L +G N + V A L+ D++Q E DP+ + L + Sbjct: 241 EEEYEDRLQKSIVSLLEPIVGKGNVTAVVKANLDFDSKQQTETTIDPNKVIVSQETLKEI 300 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + + + + ++ S N+ K+E+++NY+ T K Sbjct: 301 NNNGDGTVSQ------SPVDNNMSNEIVNNNSSSNSSKEEQKTNYDSGKSESKTIQAQGK 354 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RL+ V +NK E V+ A GI++ RGD IT++ M F Sbjct: 355 VDRLTATVYLNK-------------TLTQEERQEFEDGVANAIGIDATRGDQITVSGMTF 401 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + + + + T++ ++G +L+ + ++R + ++ Sbjct: 402 DTSSIDKAQATLEEMNAEEAANKKTMMMIAGGVIGAILIGAIIFFIIKRRKKKQEEEEQL 461 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + P + + Sbjct: 462 LDTLIDDTIIPKEPDTFDPIEFETKTQKSHLE-----------------------NEIKK 498 Query: 534 MIEINEERFAKILRKWARSEI 554 E+ +I++ W Sbjct: 499 YATEKPEQVVEIIKSWLTENE 519 >gi|167041778|gb|ABZ06520.1| putative Secretory protein of YscJ/FliF family protein [uncultured marine microorganism HF4000_093M11] Length = 461 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 105/456 (23%), Positives = 196/456 (42%), Gaps = 14/456 (3%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D LQF +L + + + + + + ++ ++ F N + L+ +E D Sbjct: 8 LSDVRLQFQDFFGALSLPKRITILAALGIILIGMVSMIFVANRSSWAPLFSNVEPGDAAA 67 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I + ++ G +I V V AR+ LA + + S G+ S G Sbjct: 68 IVEKLQENQIPYMLAPGGRTIMVEPHRVDHARLTLAKEKV-LPGSGVGFLDLFATPSLGE 126 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181 T F Q + A EGE+AR I +I+ + +A+V + +P F PTA++ + + Sbjct: 127 TEFQQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQVEPTAAIALNLTSS 186 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQ 238 + K E I HLVA+AV L +V + D TG LL+ +++ + + S ++ Sbjct: 187 GASRKQIETIVHLVASAVEGLSPRNVKITDQTGTLLSRGISDDSAGGKMNDNYSYKSRLE 246 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 E+E + + + +G D R V A L D + I+E + DPD S ++ ++ Sbjct: 247 KELEAKVVRQIEEVVGKDRVRVNVSATLRFDRRTIKEQLIDPDQTSVVSEQIVDESSTGT 306 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 S P V N+P + R+ ++ KK N+E + + I ++ RLS Sbjct: 307 RSIPVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIILESAVGEVVRLS 363 Query: 359 IAVVVNKGRLTEVLGR-----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++V+++ R + + + I +V AA G N RGD + + +M F Sbjct: 364 VSVLLDNRRSQILDESGNSLGRTNTPWTEGEKETIIGLVKAAMGYNEERGDRVFVGNMPF 423 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 E + ++ + ++ V+ + + Sbjct: 424 -EAAVEEDKASEIEATRVRNKFILDVVRYVALGLSA 458 >gi|251779126|ref|ZP_04822046.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083441|gb|EES49331.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 520 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 115/564 (20%), Positives = 225/564 (39%), Gaps = 55/564 (9%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M +L+++ ++ S + + + + I+ ++ + +S Y L+ L+ D Sbjct: 1 MNKLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIVSTIIYTSSNKYQVLFSNLDPKD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I L+E + +I G +I VP+ V + R+ LA + S +SGYEL D +S Sbjct: 61 AQTILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSS 115 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--I 177 FG+T ++ ++R EGE+ +TI+S S I +ARVHI F K A+V + Sbjct: 116 FGMTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLEL 175 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKS 230 + + ++I LV+ + N+ ++ V+D LLTAN + L K Sbjct: 176 KTGSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQ 235 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 S+ + + +++ I L +G D ++ V +L+ D++Q + V DP+ KV S + Sbjct: 236 YSLEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQT 294 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 K+ + S V+ N+ S+ + N+ ++E+++NYEI Sbjct: 295 IKEVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISA 351 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++R++ +VVV+ + I VS A G NS RGD I++ Sbjct: 352 PGEVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLG 398 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 M+F + ++ + +F + ++ + A+ + I Sbjct: 399 MNFDPSLKEDAQSQVDAFNAEAKQKEMQK--------------YMIMGAIALIAIIIVIV 444 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + ++ D + F N Sbjct: 445 ILVKKRRKNAANEYDDETQLLDVVIGDEKEAEVFEPIEFETKNEKTHMEN---------E 495 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 + E+ +I++ W + Sbjct: 496 IKKYATDKPEQVVEIIKSWLSEDE 519 >gi|222530139|ref|YP_002574021.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM 6725] gi|222456986|gb|ACM61248.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM 6725] Length = 560 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 107/569 (18%), Positives = 221/569 (38%), Gaps = 29/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + +S +++ ++ + ++ + A + PHY ++ L+ + Sbjct: 5 LNDYLKSIKEKWSSFSKSQKIMFVVSSSIILLSVIVAIYITTRPHYITIFSGLDPKEAAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I LS+ ID + ++ G++I V + V +A++ A G P +SS + + +S Sbjct: 65 IQNILSDQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI + ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TEADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L+ N + + K L + A Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE I + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 245 KNEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S S + N + + K +E NY+ N K I T Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406 + + V+ T+ ++Q K S+ + + I Sbjct: 365 TINYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETII 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R ++ + + LL+ L + + Sbjct: 425 NLIKSATGIQNVTVEGYEIPTFVDKPQRQIP--VDYIYVALAFLLLMVFAASVLIK-ASR 481 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 +K E+ G L L + + + + Q Sbjct: 482 SKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI----------NVEEFGVSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +++ E A++LR W + E Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|329896193|ref|ZP_08271387.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088] gi|328921936|gb|EGG29302.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088] Length = 640 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 108/589 (18%), Positives = 209/589 (35%), Gaps = 53/589 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + + A +L+ ++LF+ +NS Y ++ + D AL + Sbjct: 55 VRRVLQQPAVKRSMPAISVLLAVLLFVIFGSMLNSTGYRSISNGMSEPDRQASYDALLAS 114 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 RI+ I VP +A++ LA+QGLP S+ GY ++ S + FM+++ Sbjct: 115 QYKVRINPASGMIEVPDGSYQQAKLFLASQGLPRSAIAGGYSALNENASMTQSQFMEQVQ 174 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188 A+E E+A+TI I I +ARVHI + F + ASV+++ Sbjct: 175 YNNAMELELAKTISQIDSIESARVHIAVNKQSVFVRERMPSKASVVVKPYFGRVVTQPQV 234 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247 ++I HLV+++VP + DVTV+D+ G L + + + K++ + ++ E+ I Sbjct: 235 QSIIHLVSSSVPYMSTTDVTVVDNYGILLSSDSSDDSLGTQKNIDFERRMEAELSGRIVD 294 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 + LG N +S V +++ + +D ++ Sbjct: 295 LIMPVLGEGNVKSIVNVDVDFTETESTFEEFDRSGTGPKTRSEVLSNDEVIGQAAAGIPG 354 Query: 308 VEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N+ + LE T + + NYE++ ++ L+ A+ Sbjct: 355 GVSNIAPDAPELEATGAAAGAGAGLETTQRTQTTRNYELDKAVRYVKEQPGRVLGLTAAI 414 Query: 362 VVNKGRLTE---------------------------------------VLGRSADQGKID 382 ++N+ L + ++D Sbjct: 415 MLNESALRDLVLIKLRQAAGTTSNSTPLEGRLAPDSAGDVNATSVGLEEFSEQQINEQMD 474 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 + +V A + RGD+I I + F + + Sbjct: 475 IEIERFRGLVIRALPFDDVRGDSINIAAAPFY-IDAPIEIITPWWEQEGIVEWGKHGFTV 533 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 + FL LLV + ++DD K P A+ G + A Sbjct: 534 IAFLFLLLLVVRPIMAFYMPKPSVDDLAVLAEKMKDGELTPAELEALEKGETLEEIKAKL 593 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + S S ++ N+Y K + + ++ + R A +L+K + Sbjct: 594 KPKK--SSISADMLDTANTYDDKVAL--IRLLVAEDSGRVANVLKKMIK 638 >gi|146296280|ref|YP_001180051.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409856|gb|ABP66860.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 562 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 112/569 (19%), Positives = 223/569 (39%), Gaps = 27/569 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + + L +++ ++L + I+ + A + PHY L+ L+ D + Sbjct: 5 LNDFLKRIKERLDKLSKSQKIMLIVSSSIIILSVIIALYVTTRPHYVVLFSGLDPKDAAQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E ID ++++ G++I V + + KA++ A G P SS + + +S Sbjct: 65 IQQTLLEQKIDSKVTNGGTTILVKDTDIDKAKMVAALSGYPKSSEITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI R ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TESDKRRTFIKLKESEIQRALKEMTDYIDDAVVNLSVPEDYTFALKDETTKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L+ + I K L I A Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSFDSSEGISSKQLQIKIAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE + + L ++ ++ + +V ++N D Q++ E Y P D + S + +K+ Sbjct: 245 KNEIERKVKELLGNYVSSPEDVKVSVNLDMNFDMQKVSETKYSPVLEDGGIVVSRKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S + + N + + + K +E NY+ N K I T Sbjct: 305 EAQSTNAGANGIPGTDTNPTQNNPQYPLSSQGGQSSYSKTDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTI 406 + + V+ + ++Q K D + + + + + Sbjct: 365 TINYDKSSIAVVLYRYVTYRQEDYEKSNQAKTMSWDEFKLQNQNNKRSFLTDQKEVENIV 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R ++ + LL+ + L + + Sbjct: 425 NLVKSATGIQNVTVEGYEIPTFVDKPQRQIP--LDYIYVAFAFLLLMAFAISLLIKSLKV 482 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 AK+ E+ G +S P V L Q + I + Q Sbjct: 483 KPAKQVELAGVGGVSIPSEQEKVEEILQE---------AQKKKEEQPIEEINIEEFGVSQ 533 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ ++ E A++LR W + E Sbjct: 534 YEKQIDKLLREKPEVVAQLLRNWLNEDWE 562 >gi|312135854|ref|YP_004003192.1| flagellar m-ring protein flif [Caldicellulosiruptor owensensis OL] gi|311775905|gb|ADQ05392.1| flagellar M-ring protein FliF [Caldicellulosiruptor owensensis OL] Length = 560 Score = 273 bits (698), Expect = 5e-71, Method: Composition-based stats. Identities = 105/569 (18%), Positives = 221/569 (38%), Gaps = 29/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + +++ ++L + ++ + A + PHY ++ L+ + Sbjct: 5 LNDFLKNIKEKWDKFAKSQKIMLVISSSIILLSVIIALYITTRPHYVTIFSGLDPKEAAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L+E ID ++++ G++I V + V +A++ A G P +SS + + +S Sbjct: 65 IQNILNEQKIDSKVANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TESDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKDEATKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L++N + + K L I A Sbjct: 185 KKSLGSNQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQIKIAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE + + L +++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYFPVLEDSGIVVSKKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S S + N + + K +E NY+ N K I T Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406 + + V+ T+ +DQ K ++ + + + Sbjct: 365 TINYDRSSIAVVLYRYVTYTQEDFEKSDQAKNMNWAQFKLQNQNNKRSFLTDQKEIETIV 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R ++ + + LL+ L + + Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDRPQRQIP--VDYIYVALAFLLLMVFAASLLIK-ASK 481 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 ++ E+ G + L + + I + Q Sbjct: 482 SKPRRLELAGVGPVEISEEKPVAEEILQEAEKRKEAEVEEI----------NIEEFGVSQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +++ E A++LR W + E Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560 >gi|154249519|ref|YP_001410344.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1] gi|154153455|gb|ABS60687.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1] Length = 535 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 96/561 (17%), Positives = 204/561 (36%), Gaps = 44/561 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +D +F + +L + + L++ +I I+ + VN+P Y L D Sbjct: 7 FVDWFAKFPEKWKALQKGQKLVIIMIIASVILAIILLAI-VNAPKYVLLLTTRTEQDAGS 65 Query: 63 ISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L I +++ G+ I +PSS V + R+ LA+ G+ S S+ G+E+ D+ + G Sbjct: 66 VIQQLETLGIPYKVEA-GNRILIPSSYNVYEVRMRLASTGI-LSGSSRGFEILDQTS-LG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIR 178 TSF +++ AL+GE+ RTI +I G+ ++RV + +P + + R + V++ Sbjct: 123 ATSFDKQVRYQIALQGELERTISTIKGVQSSRVVLTLPKYTYYVRGEMSEPRASVMVVMD 182 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235 + + I L+ AV + ++ ++D TG+ LTA + + + + Sbjct: 183 PGQSLSKEQVKGIVSLIQGAVEGIKTENIKIIDQTGQDLTAMLNLDQSTALASTKMELKV 242 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL--SKD 293 +++ + I L G +LN + + + Y +K E +R ++ Sbjct: 243 NLENYYKQKIKVPLENIFGPGRVEVIPDVKLNWEKVEKQITTYTAPNKKEGLVRSKETES 302 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-Y 352 + + V E N+P + K E NYE+N + Sbjct: 303 EYSTTSQGAGGPVGTESNIPPTTYESTEGTGVT-TYQKSHEIVNYELNQVIENIVKNTEG 361 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-TITITSM 411 ++E ++++VV++ + D I I+ + N+ G T + + Sbjct: 362 EIENITVSVVIDSSSTVLE------RTSKDEVQNYIKTIIEKSISANTPNGSVTYAVAFL 415 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + +I ++ L ++ + + ++ Sbjct: 416 PFSREIQEQFYKELQTTTEIQKLRTRLILVLLASILIFFASYLGLIQFRKIKARKMIQER 475 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ + + A+ +Q L Sbjct: 476 YKLLQEEAQRALEAIEQAEEVQPGGEEEAI----------------------LEQLKEYL 513 Query: 532 LHMIEINEERFAKILRKWARS 552 + E + E A +L+ W Sbjct: 514 QQVSEASPEEVATVLKVWISE 534 >gi|332187937|ref|ZP_08389670.1| flagellar M-ring protein FliF [Sphingomonas sp. S17] gi|332012098|gb|EGI54170.1| flagellar M-ring protein FliF [Sphingomonas sp. S17] Length = 580 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 115/536 (21%), Positives = 211/536 (39%), Gaps = 41/536 (7%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +SP L+ L +D ++ ALS ANI +I+D +++V KAR+ LA QGLP Sbjct: 63 SSPPQKTLFENLSDADKQAVTTALSAANIKSKINDGTGALTVNEEDYSKARMLLAGQGLP 122 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + GY + D++ G++ ++ +A E E+AR+I+ I + ARVH+ MP+ Sbjct: 123 KQ-APGGYAILDQLP-MGVSRAVEGERLRQARESELARSIEEIDAVAEARVHLAMPEASV 180 Query: 164 FRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 F + A P+ASV+++ ++I +LVA++VP + DVTV+D G LL+ Sbjct: 181 FVRDKASPSASVVLKLNAGRALSEAQVQSIINLVASSVPGMKPEDVTVVDQMGGLLSKKG 240 Query: 222 -MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280 + + + + ++ + + + L +G NF + V A++N+D YD Sbjct: 241 ADGASGDDRRIDFQRRLEEKYRTQLIQLLTPLVGAGNFTAEVQADVNLDETSATSERYDK 300 Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--------------------RKV 320 D R+ + + + + P N P + Sbjct: 301 DGA-LRAETGNWTGNQKDPTPPGGIPGALSNTPPPASTLQQPQAANGANGAPPADGKPVA 359 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 P Q Y++N + T ++RL++AV++ A + Sbjct: 360 GGPGLNPEKQSDAFQRAYDLNKQVSVTRAAPGSIKRLTVAVLLR---------DPATGKR 410 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + +I+ +V +A G + +R D +T+ S F + + + + V Sbjct: 411 SQMEITQISDLVKSAVGFDQQRNDNVTVISRKFADAGVEDKRA------WYDNSWLPIVA 464 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 LV LLV LG+ L + + + + ++A G D Sbjct: 465 RNATALVIALLVLLLGVRPLVKAMTKKKDEAEAAKALPMGAADGTATAAQGGAPRVDADG 524 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 Q + L + +++ N R A +R RSE + Sbjct: 525 QPLPEQIAIQPAVTLDEIEETNNFDDRIVKVRGFTRDNPARAALAIRDMIRSEAQS 580 >gi|261419419|ref|YP_003253101.1| flagellar MS-ring protein [Geobacillus sp. Y412MC61] gi|319766234|ref|YP_004131735.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52] gi|261375876|gb|ACX78619.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC61] gi|317111100|gb|ADU93592.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52] Length = 528 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 94/532 (17%), Positives = 186/532 (34%), Gaps = 65/532 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P+S Y F + SFG+T + +++A++ E+A I++I G+ A+V I +P Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161 Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F +AS++++ + +A+ HLVA +VPNL ++ +++ + Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221 Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 N G I + I+ +I+ + + L +G D +V A+++ ++ Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281 Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 E + P + S++ K+ + P A N V + + N Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGATNGN 339 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++ EE N E+N YK+ L I V+V + S ++ + Sbjct: 340 YERTEETINNEVNKIKKQIVESPYKIRDLGIQVMVEPPDPNDPN--SLPPETVNDIQKLL 397 Query: 389 NKIVSAAT-------GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 IV + + + I ++ F F Sbjct: 398 GTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWY--------- 448 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 G ++L + ++ Sbjct: 449 -------------------------------ASGAGALLLVALLLFLWLRRRREDEEEEE 477 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + S +L + + +L + + + FAK+L+ W E Sbjct: 478 EHLFTPPLSTEPDLPEPPETE-AALRRRQLERLAKEKPDEFAKLLKTWLSEE 528 >gi|253682590|ref|ZP_04863387.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873] gi|253562302|gb|EES91754.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873] Length = 524 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 111/567 (19%), Positives = 219/567 (38%), Gaps = 57/567 (10%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M I +Q + F+ L + + + + ++L I+ + +N+ Y LY ++ +D Sbjct: 1 MDKIKEQFRKLFEKFKELSKIKKIAFSILVLGIIIGIVYLVISLNTTKYAVLYKDMDPND 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L++ +++++ +N SI VP + R+ LA Q +S + GYE+ D ++ Sbjct: 61 AQTVMAKLADKKLEYKVENN--SIKVPEDKAAELRMELAPQ---LTSGSKGYEILDDGDT 115 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177 FG+T +E+ RALEGE+AR I+S+ + A+V +VM G+F K +ASV + Sbjct: 116 FGMTDKERELKYKRALEGELARDIKSLPEVKEAKVLLVMQQEGNFFKQEDPGSASVTLEF 175 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLTA-------NEMERNIL 227 + +AI LV+ +V NL + V V++ + L+ N+ ++ Sbjct: 176 ETGKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVT 235 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K + + ++ E I L G ++AV ++N D + ++DP+ V RS Sbjct: 236 EKQENYKKNLEKEYVKKIMNVLTPKYGEG-VKAAVNVDVNFDASEKTSTLWDPN-NVVRS 293 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 KD + S+ + T + + + ++ NYE+ Sbjct: 294 EETEKDTENSK-----GSKTSASPVDNNMSNTYNSKDENGTSTHEKTTKNYEVGKIEQKV 348 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 K++++S +V +N L+ V +IN +V+ A + RGD ++ Sbjct: 349 VGAPGKIKKISASVTINDENLSPVD------------KDKINSLVAGAISYDESRGDIVS 396 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + M F E ++ + I L G+ A R Sbjct: 397 VEGMKFNEVNESDAAEEAKKKAEEQKAKEKAFIYKCAGGALLALAIIAGIVAFIRKRRKK 456 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + EV SI + + + + Sbjct: 457 NESEEEVVSDSIDMLIDDNVE--------------------PTEQLKSINFDEENENTYV 496 Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554 + + E+ +I++ W + Sbjct: 497 EKEIKKYATEKPEQVVEIIKAWMAEDE 523 >gi|56419754|ref|YP_147072.1| flagellar MS-ring protein [Geobacillus kaustophilus HTA426] gi|56379596|dbj|BAD75504.1| flagellar basal-body M-ring protein [Geobacillus kaustophilus HTA426] Length = 528 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 95/532 (17%), Positives = 187/532 (35%), Gaps = 65/532 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P+S Y F + SFG+T + +++A++ E+A I++I G+ A+V I +P Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161 Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F +AS++++ + +A+ HLVA +VPNL ++ +++ + Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221 Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 N G I + I+ +I+ + + L +G D +V A+++ ++ Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281 Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 E + P + S++ K+ + P A N V + + N Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGATNGN 339 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++ EE N E+N YK+ L I V+V + S ++ + Sbjct: 340 YERTEETINNEVNKIKKQIVESPYKIRDLGIQVMVEPPDPNDPN--SLPPETVNDIQKLL 397 Query: 389 NKIVSAAT-------GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 IV + + + I ++ F F T Sbjct: 398 GTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTESTPDRPAWWWY--------- 448 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 G ++L + ++ Sbjct: 449 -------------------------------AAGAGALLLVALLLFLWLRRRREDEEEEE 477 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + S +L + + +L + + + FAK+L+ W E Sbjct: 478 EHLFTPPLSTEPDLPEPPETE-AALRRRQLERLAKEKPDEFAKLLKTWLSEE 528 >gi|188586017|ref|YP_001917562.1| flagellar M-ring protein FliF [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350704|gb|ACB84974.1| flagellar M-ring protein FliF [Natranaerobius thermophilus JW/NM-WN-LF] Length = 519 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 107/568 (18%), Positives = 202/568 (35%), Gaps = 64/568 (11%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + + Q + +L + + + A+ + + I+ + + Y + L+ Sbjct: 1 MNEMLANAKNQSQQFWGNLSKGQKITFATALGLFIIGTLVLSVSMLQTDYTEVARDLDPR 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D + I+ + + + ++I D GS I VP + R+ LA GLP GYE D Sbjct: 61 DASEIAEMIEDMGVSYQIEDGGSRILVPEDDHDQVRLELAGAGLPRGGV-LGYEELD-TQ 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 GLT +E+ + ALEGE+ RTI+ + ARVH+V+P+ F + A+V + Sbjct: 119 QLGLTESEREMRQKIALEGELVRTIRRYPEVEDARVHLVLPERSIFEETREDSQAAVFLD 178 Query: 179 AINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------- 229 + +I +LVA +V L +VT+ L + + Sbjct: 179 LEPHRELTEQQISSIVNLVAHSVEGLTPKNVTLTSGDRMLSDKTQSDDKNSPSAGSEVEK 238 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVER 286 LSI + Q+ ++ ++ L +G N + V AEL+ D + +++P D + Sbjct: 239 RLSIQEEFQNTLQSSVESMLENIVGRGNVTARVNAELDFDEFESFSELFEPVEGDEGILV 298 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S+ ++ E + ++ +E NYE+N Sbjct: 299 SMHREEEFYSGEDVSQGGVPGDPAEGTPEYQEVT-GEGGSFDYERIDETRNYEVNKIEER 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-T 405 + L +LS+AV VN Q + + I +V A GIN + Sbjct: 358 SRLAPGALNKLSVAVAVN-------------QELDEDEMDSIEALVEDAVGINLENENHQ 404 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 IT+ MDF + + ++ + ++ L + + + Sbjct: 405 ITVEQMDFDTSLQDMLAAQHEKKQQMAAQQRWITLGIGAAVLVVLALIG---RKIYKTIR 461 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + + ++ +S +P Sbjct: 462 DRKEIEDRLEREQMVQDQAAASEDIEPEVPK----------------------------- 492 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 ++ E E FAK+L+ W E Sbjct: 493 -VQKQISDFAEKKPEEFAKVLKAWLAEE 519 >gi|103488413|ref|YP_617974.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256] gi|98978490|gb|ABF54641.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256] Length = 551 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 99/552 (17%), Positives = 196/552 (35%), Gaps = 44/552 (7%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + A + I + A F + + L+ L+ +D ++ AL Sbjct: 30 LTQFVRQPAVQRALPAIAMTAAIGIAALAYFTMQTAPQAQLFAGLDDADKAAVAEALQAQ 89 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I I +++V + + +ARI LA QGLP ++ + + G + ++ Sbjct: 90 GIGHSIDGTTGALTVDADKLHQARIALAGQGLPKAAPSG--DSLIAALPMGSSRAIEGEA 147 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188 A E +++RTI++I + +ARVHI + F + TASVM+ Sbjct: 148 LRSAREADLSRTIETIDAVKSARVHIAAAEPSLFVRDDKPATASVMLTLQNGRALGDGQV 207 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 +AIR LVA++VP ++ V+V+D G LL+ ++ L + ++ ++ Sbjct: 208 QAIRFLVASSVPGMNADQVSVIDQRGALLSDTASGSDMKAFQLQL--QVEDRFRRALDTL 265 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L LG N+ V A+++M Q + + + S ++++ + + Sbjct: 266 LGPMLGAGNYTVEVHADVDMSESQATRESFPENDRALTSEQITRSVSGTANAPAVGIPGA 325 Query: 309 EQNMPHVSDRKVPLPRSLE--------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 N P + + YE+ + T KL R+S+A Sbjct: 326 LANQPPQATTITAEGPQPAPANAPLPGTESNENAARAYEVGREISVTHSPQGKLRRVSVA 385 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V +N+G+ + + LA+I+ +V A G ++ RGD + I F + Sbjct: 386 VALNQGK----------KALTQADLAKIDALVKGAIGYDAARGDMVAINQRPFAPVEDTA 435 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + L + ++ AL+ + + E + Sbjct: 436 PAFYDQGWFLPLVKQVGAILAALLAFLFIGRPMIRAARQRAAARLEQNQALEETLLAATD 495 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 P S A + + A S + + + + Sbjct: 496 RPALASGANSREITLEMIEAAPS--------------------YEARANLVRAFVRQDSA 535 Query: 541 RFAKILRKWARS 552 R A ++R + Sbjct: 536 RAALVVRHLMQE 547 >gi|229896276|ref|ZP_04511446.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229701199|gb|EEO89228.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] Length = 475 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 98/482 (20%), Positives = 187/482 (38%), Gaps = 58/482 (12%) Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G+EL D+ FG++ F ++I RALEGE++RTI ++ ++ RVH+ MP F + Sbjct: 16 GAVGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVR 74 Query: 167 IGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 PTASV + + AI ++V+++V L G+VTV+D TG+LLT ++ Sbjct: 75 EQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAG 134 Query: 225 N-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 + L +++ + I LA +G N + V A+++ +++ + Y P+ Sbjct: 135 RDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQA 194 Query: 284 VERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------------- 320 + S+ SE N P V+ Sbjct: 195 ANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANTA 254 Query: 321 ---------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 ++ + + ++ +N+E++ T ++RLS+AVVVN Sbjct: 255 ATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS---- 310 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 LA++ + A G ++ RGDT+ + + F + ++ Sbjct: 311 DKAGKPIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---Q 367 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491 F ++NA +L+ L+ L LR + + + + A T Sbjct: 368 QQSFFDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAET 425 Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + +AL NQ S + R+ + + + A ++R+W Sbjct: 426 VKQSKEELALRKKNQQRVSA-------------EVQAQRIRELADKDPRVVALVIRQWMS 472 Query: 552 SE 553 ++ Sbjct: 473 ND 474 >gi|302874589|ref|YP_003843222.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B] gi|307690800|ref|ZP_07633246.1| flagellar MS-ring protein [Clostridium cellulovorans 743B] gi|302577446|gb|ADL51458.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B] Length = 522 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 100/561 (17%), Positives = 202/561 (36%), Gaps = 52/561 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I D + + + + R + + + V I+ +A Y L+ L+ +D Sbjct: 4 IADLIAKIKGIFNGMSKVRKISIGLITAVVIVAIVALIITTGKTKYTALFNNLDATDSQN 63 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L E I +++ ++ ++I VP VG+ R+ AA S + G E+FD + G+ Sbjct: 64 IVTKLKEEGIPYKVENSTNTIMVPDEQVGQLRLQYAAD---IKSGSIGLEIFDTSSQLGI 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 + + RAL+GEI RT++S + A+V+IV+P+ +F K A + S+ ++ Sbjct: 121 SDAEFNVKYQRALQGEIERTVKSFEQVEDAKVNIVLPEDSTFVKDTAPASVSITLKLKPG 180 Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSLSIV 234 + +AI LV+ +V NL ++ ++D+ +LLT + L Sbjct: 181 TELSEEQVKAIVSLVSTSVKNLPKENIQIVDNNMRLLTDKLFKGSEDESSVTASTQLEEK 240 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + +E I L G ++ V A LN D+ D + + Sbjct: 241 MKFEDYLEEKILSQLEPMYGQGKVKANVNAVLNFDSVSTETTTVDKTPPIVSQNISINAS 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YK 353 + T+ N+ + + + + +NY + K I + Sbjct: 301 DANNTTGNSPVDNNLSNVINEYMQNGNI-------SSANQTTNYSTDGKVIERKQNALGN 353 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + +S AV ++ + LA++ K+V+ G + D + + +F Sbjct: 354 VTAVSAAVAIDN------------AELTERQLADVKKLVNKTIGQAKQNEDETIVMAYEF 401 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 +L S + M+ + A + +G +V L AL ++ E Sbjct: 402 N-PELKASIQKSLEEMEAAQKAEAQKKLYTMIGLGAAVVIGLVAFALVLRKRRSKKEELE 460 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + + + P D + + Sbjct: 461 MIETEDVVLEEMPIENEINFKPLDLEQKSQKDHIE--------------------DEIRK 500 Query: 534 MIEINEERFAKILRKWARSEI 554 + ++ A+I++ W S+ Sbjct: 501 YAQNKPDQVAEIIKSWLVSDE 521 >gi|297530606|ref|YP_003671881.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3] gi|297253858|gb|ADI27304.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3] Length = 528 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 94/532 (17%), Positives = 186/532 (34%), Gaps = 65/532 (12%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 FF LY L + +I L + + ++D G++I VP V ++ LAA+ Sbjct: 43 FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 G+P+S Y F + SFG+T + +++A++ E+A I++I G+ A+V I +P Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161 Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F +AS++++ + +A+ HLVA +VPNL ++ +++ + Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221 Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273 N G I + I+ +I+ + + L +G D +V A+++ ++ Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281 Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 E + P + S++ K+ + P A N V + + N Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGATNGN 339 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++ EE N E+N YK+ L I V+V + S ++ + Sbjct: 340 YERTEETINNEVNKIKKQIVESPYKIRDLGIQVMVEPPDPNDPN--SLPPETVNDIQKLL 397 Query: 389 NKIVSAAT-------GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 IV + + + I ++ F F Sbjct: 398 GTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWY--------- 448 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 G ++L + ++ Sbjct: 449 -------------------------------AAGAGALLLVALLLFLWLRRRREDEEEEE 477 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + S +L + + +L + + + FAK+L+ W E Sbjct: 478 EHLFTPPLSTEPDLPEPPETE-AALRRRQLERLAKEKPDEFAKLLKTWLSEE 528 >gi|28211331|ref|NP_782275.1| flagellar MS-ring protein [Clostridium tetani E88] gi|28203771|gb|AAO36212.1| flagellar M-ring protein fliF [Clostridium tetani E88] Length = 521 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 102/562 (18%), Positives = 215/562 (38%), Gaps = 53/562 (9%) Query: 4 LDQLLQFFKSGTSLGRTRIL----ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 +++L Q+F + + ++ + I ++ +++ P Y L+ +E D Sbjct: 1 MNKLSQWFNTLKDKIKDLSKKKKIAYGAIAVGIIGALISGIVYISKPKYAILFSNMEQED 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + + L ++ +F++ +G++I VP V R+ + +Q +P + ++G+EL DK Sbjct: 61 MGTVYNKLKDSKENFKV--DGNTILVPREKVDSLRMEVMSQ-VPIKNGSNGFELLDKN-K 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 FG T +I RAL+GEI RTI+ I ARVH+VMP+ F K AS+ ++ Sbjct: 117 FGATEEEMKINYQRALQGEIERTIKGFPEIENARVHLVMPEDSVFIKDDTPAKASITLKI 176 Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDST---GKLLTANE--MERNILGKSLS 232 +AI L + +V NL +V + D+ K L + + K + Sbjct: 177 KPYKKITDNQVKAIVALASGSVKNLPKENVEINDTNQILTKDLFKEDEFDSSESIQKQQA 236 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + + +E + L A G + + + A+LN D Q +YDP +++ +S+ Sbjct: 237 LKKEYEKTLEDKVTSMLEAVYGKERAKIKINADLNFDAIQDESTIYDP-----KNVVVSE 291 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + T T + + +E NYE++ + T Sbjct: 292 KNVKETTPGGNDLATGGSPVDDNMRNRAGNNEKDALVTHEENVRNYEVSERKNKTLRAPG 351 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RL+++VV++ ++ + V +A G N +RGDTI++ + Sbjct: 352 SVRRLTVSVVLDGN-------------LDNATRNAVQNTVKSAVGYNEQRGDTISVEGLP 398 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + + + L+R + ++ +G L + + +++ N +D + Sbjct: 399 FDTAYRERIEKDKEAMEEELARDKKMNLYKILAALGVLALGIIIGILVKKRRNKEDNELD 458 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + + + Sbjct: 459 LINEGLDVVIDDEITE--------------------EKPKFKPIQLEEESEGAYIEREIR 498 Query: 533 HMIEINEERFAKILRKWARSEI 554 ++ +I++ W + Sbjct: 499 KYATEKPDQVIEIVKAWLAEDE 520 >gi|254436608|ref|ZP_05050102.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307] gi|198252054|gb|EDY76368.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307] Length = 602 Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 98/600 (16%), Positives = 217/600 (36%), Gaps = 61/600 (10%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 +S + A ++L + + +P L+ L ++ + AL Sbjct: 5 RSFYMQPAVQRAFPAVAAAFLVVLGLILYLLLQAPQRTTLFASLPEAEKAAVMDALRNNG 64 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 +D +I I+VP + +R+ LAAQGLP S GY + G + ++ + Sbjct: 65 MDVQIDSTTGDITVPVADYHSSRMSLAAQGLPQS-MPDGYSVL-SDMPMGTSRSVENMRL 122 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAE 189 ++ E E+AR+I I+ I A+RVH+ +P+ +F + PTASV + +A + Sbjct: 123 KQSQEIELARSINEINVISASRVHLAIPERSAFARNAQNPTASVFLQVQAGRSLSEQQVM 182 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINK 247 AI +LV+++V NL VTV+D G+LL+ ++ ++ + L ++ + Sbjct: 183 AIVNLVSSSVANLPRTSVTVVDQNGRLLSDTVDDPATDLADRQLEYRLRLEEIYRARVEN 242 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L +G N + V +++ + E + P + ++ ++ Sbjct: 243 LLTPIVGPGNVSAQVSLDIDFTQTERTEDLVIPGRALLSEQVALEEDVIAQM---GGIPG 299 Query: 308 VEQNMPHVSD---------------------------------------------RKVPL 322 N P L Sbjct: 300 AVANTPPPRPELDGAPPADGAAPPADGAAPPADGAAPPADGAAPPADGAAPPADGNGQGL 359 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----LTEVLGRSAD 377 NYEI+ A + ++ + +AV++ + L Sbjct: 360 ASEESRVRSTNSLRNYEISRSITAQSSPMAQIVSVQVAVLLREQPSAVEGLDAEDSIPPQ 419 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ-LFNSGTVQVSFMDILSRHF 436 G +++ ++ +VS GI+ RGDT+ ++S+ F+ + +F+S + F+ Sbjct: 420 VGFDPAWIDDVRGLVSRTVGIDESRGDTLIVSSLPFISTEAVFSSMSENTDFLWYEDPWV 479 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 + ++ ++ +VT + L + + G + + + + + M Sbjct: 480 REAVRNVLMVMVLAVVTLGLIKPLLMQFLSAPGEGMMMPGNTGTAGGGVLTDMDVIEMEE 539 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEERFAKILRKWARSEIE 555 D + + +++ S + + ++ R + + + + +++ Sbjct: 540 GQTLEDIKAKLKPKKTTISAEMLDTANSYDDKVALIRMIVSDEAGRVSNVFKAFMEDDMD 599 >gi|148269839|ref|YP_001244299.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1] gi|281412278|ref|YP_003346357.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10] gi|147735383|gb|ABQ46723.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1] gi|281373381|gb|ADA66943.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10] Length = 532 Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 94/472 (19%), Positives = 192/472 (40%), Gaps = 28/472 (5%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M I+++L +K S+ R R ++ + + ++ + + PHY L L Sbjct: 1 MNIVERLRDLWKKIVELWNSMSRERKFLVGGIGIALVITIVLFAVVASVPHYRLLVAGLN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + I L E NI +++S G I VP S V + R+ LA++G+ SS G+ + + Sbjct: 61 EDEAGVIIQKLEEMNIPYKVSP-GGDIYVPDSYNVYELRMKLASEGV-LGSSRKGFSILN 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPT 172 + + FG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + R + Sbjct: 119 ENS-FGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177 Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229 V++ + I LV+ AV L +V V+D+ + L+ + + Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER--S 287 L + Q ++ E I KAL + G +N + Y+ ++ E Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + ++ + S + N+P ++ + ++ +NYE+N Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPLTYPSATSEGTS-TYERTHTITNYELNEVYQKI 356 Query: 348 THD-NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405 + ++ LS+AV++ S+ + IN +V G I S + Sbjct: 357 IQNREGEISSLSVAVII--------DASSSVLQNSSDWSGVINDLVEKGVGSITSSASLS 408 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + + + F + + ++ ++ R + + T ++ +L + Sbjct: 409 VAVAFLPFDR-SIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVI 459 >gi|170288525|ref|YP_001738763.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2] gi|170176028|gb|ACB09080.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2] Length = 532 Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 94/472 (19%), Positives = 192/472 (40%), Gaps = 28/472 (5%) Query: 1 MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M I+++L +K +S+ R R ++ + + ++ + + PHY L L Sbjct: 1 MNIVERLRDLWKKIVDMWSSMPRERKFLVGGIGIALVITIVLFAVVTSVPHYRLLVAGLN 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + I L E NI +++S G I VP S V + R+ LA++G+ SS G+ + Sbjct: 61 EDEAGVIIQKLEEMNIPYKVSP-GGDIYVPDSYNVYELRMKLASEGV-LGSSRKGFSILS 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPT 172 + + FG TSF +++ AL+ E+ R+I +I G+ ARVH+V+P + + R + Sbjct: 119 ENS-FGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177 Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229 V++ + I LV+ AV L +V V+D+ + L+ + + Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER--S 287 L + Q ++ E I KAL + G +N + Y+ ++ E Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + ++ + S + N+P + + ++ +NYE+N Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPFTYPSATSEGTS-TYERTHTITNYELNEVYQKI 356 Query: 348 THD-NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405 + ++ LS+AV++ S+ + + IN +V G I S + Sbjct: 357 IQNREGEISSLSVAVII--------DASSSVLQNNSDWSSVINDLVEKGVGSITSSASLS 408 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + + + F + + ++ ++ R + + T ++ +L + Sbjct: 409 VAVAFLPFDR-SIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVI 459 >gi|225871927|ref|YP_002753381.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC 51196] gi|225792578|gb|ACO32668.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC 51196] Length = 534 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 115/556 (20%), Positives = 223/556 (40%), Gaps = 39/556 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + F L + + + + + L ++ + LY L D Sbjct: 14 QLRGAATGFTAWVRQLTPAQRMRWGGLAALGVALLAGLFWYGTRTDWRTLYAGLNPDDAR 73 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L+ A I F +S +G+++ VP+ + KAR+ + A G PSS G+ LFDK N G Sbjct: 74 TMAGQLTTAGIPFEVSPDGTALEVPAPDLDKARLTVTAGGGPSSG-RMGFALFDKPNWVG 132 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180 + F +++ RALEGE+ +TI ++ + ++RV++VMP F ASV++R Sbjct: 133 -SDFDEQVNYQRALEGELEQTIDTLEDVRSSRVNLVMPHDSLFTSEQRAAKASVVLRLKH 191 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + A+AIR+LVAAAV L +V ++ + G ++ ++ A + Sbjct: 192 RTLSEEEAQAIRNLVAAAVDGLTPANVVLVSANG-------EDQFGAHGQNALELAQEQA 244 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L G+ N +AV + + T + +Y+P+ S++ S + S+ Sbjct: 245 LTQQVIGTLQPVAGLGNVHAAVHMDFDTATTSETDEIYNPNQTATLSMQRSTQSTGSQPV 304 Query: 301 QPESAVTVEQNMPHVSDRKVP---LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 N P+ + P P++ + +EE S Y ++ K KL RL Sbjct: 305 -AAGVPGAASNAPNSNATGKPPLYPPQATGQQNSQEESSTYGVSKKIEHRAQGPGKLNRL 363 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 ++AVV+N+ + + + Q + + + + ++V AA G N RGD +T+ M F Sbjct: 364 TVAVVLNEPWVMQGK-KKVWQPRSAAEMQRLTQLVQAAVGYNQARGDIVTVEQMPFDTGS 422 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 ++ + R + ++ L+G LLV + + + + Sbjct: 423 --DTPLSLQERVQSWMRMASPLLRPAALLLGILLVVLMVFRPMLKAASSSGKALPAGVSV 480 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + + + + R+ + Sbjct: 481 KAVIGDTTAEGLAELPQADRQQLQAQA----------------------IYERVAERVNK 518 Query: 538 NEERFAKILRKWARSE 553 + A++L+ W SE Sbjct: 519 EPAQSARLLQSWIHSE 534 >gi|332669190|ref|YP_004452198.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484] gi|332338228|gb|AEE44811.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484] Length = 535 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 108/547 (19%), Positives = 210/547 (38%), Gaps = 36/547 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + + + + V ++ A +++ P L+ L +D + + L+ Sbjct: 11 RLTGAVRQFSIAQRTLGLIGVAVLLLGAFALSTYLSRPTMSPLFSGLSGADASAVVDELT 70 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A + ++++D GS++ VP + + RI LAA GLP+++ GY L D++ + F Q+ Sbjct: 71 AAGVQYQLADGGSTVLVPDAQLYDQRIRLAAAGLPTNADGGGYSLLDEMP-MTSSEFQQQ 129 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186 T RALEGE+ART+ +I G+ +A V + +P+ F A PTASV IR Sbjct: 130 TTYQRALEGELARTVGAIDGVESASVKLALPEESVFVSEKADPTASVFIRTRPGTSLSLD 189 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 +AI HLV+A + + DV V+D+TG++L+A + + ++ Sbjct: 190 QVQAIVHLVSAGIDGMTPTDVAVVDATGEVLSAVGTGTTGGVAGQQ-ASDYEARVAASVQ 248 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSETSQPES 304 L +G V AE++ PD+ S ++ S Sbjct: 249 ALLDPLVGPGRSAVTVTAEIDQSQTDRTVEEFTATPDTPPLASSTTTETYTGGAASGAAG 308 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + ++ + + E +N + TT ++R S+AVV++ Sbjct: 309 VLG----PDNIQVPNGDGTTGEGSYESTTEDVTNAVNKSTERTTQGPGAIQRQSVAVVLD 364 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ-LFNSGT 423 + + LA++ + ++AA GI+ RGDTI + ++ F Q Sbjct: 365 EKAAAPID------------LAQLRETIAAAAGIDPERGDTIAVQAVPFDTTQAEEAGAA 412 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + + ++I L + A+ R ++G + Sbjct: 413 LAAAEEAEKAAQQTSLIRQAAIGGVVLALLLAIAIAMTRRSRKARRTAIDLGELQPV--- 469 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + ++ AL+ +D + + + + + A Sbjct: 470 ----------LTDEQRALEGLPEDALPELPPGPLPGEPDPVARKRAEITALADDQPQEVA 519 Query: 544 KILRKWA 550 +LR W Sbjct: 520 DLLRGWL 526 >gi|320107022|ref|YP_004182612.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4] gi|319925543|gb|ADV82618.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4] Length = 559 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 119/567 (20%), Positives = 220/567 (38%), Gaps = 60/567 (10%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + ++ + + + L + +A ++ + L+ LE D+ ++ L Sbjct: 25 ELRSRVAAMPQRQRMTLLASAFALAAFCVALVWWTGRTDWRPLFKGLEGRDLQQVEQQLG 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I ++ + +GS I V + + KAR+ +AA+G+P S G+ELFDK N G + F ++ Sbjct: 85 SAGIAYQPTPDGSGIEVAAEQMDKARMVVAAKGMP-GSGRMGFELFDKPNWVG-SEFDEK 142 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKS 187 + RALEGE+ TI+++ + +ARVH+ + F TASV+++ Sbjct: 143 VNYQRALEGELEHTIETLGAVRSARVHLTLSRQSLFAAEEHPATASVVLKMRNASLARDQ 202 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247 A +IR LVA AV NL V ++D+ G VQ + +E + Sbjct: 203 AASIRALVAGAVENLHPEQVALVDADGHF-------DLNGPTQRGEVQEQEQALERKLVA 255 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307 L G N R+ V + + ++ + VYDP S++ S+ ++ ++ + Sbjct: 256 MLEPLAGTGNVRATVNLSFDSEAEERTDEVYDPQQSAPVSMQRSEQ-SSTQANRQGAVAG 314 Query: 308 VEQNMPHVSDRKVP----------------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351 NMP + P + +EE S+Y + + T Sbjct: 315 AAANMPGPAPAVPPLLATPEKKDANGLPVYPQAGGPSQAVREESSSYAVTRHLVHTQRGP 374 Query: 352 YKLERLSIAVVVNKGRLTEV---LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 +++R+ AVVVN +TE G + + + + + ++ AA G + +R D + I Sbjct: 375 GRVQRIVAAVVVNDRAVTEKAGKDGATLWKQRTPEEMRRLEQLAQAAVGFDPKRADQVVI 434 Query: 409 TSMDFLENQLFNSG---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++ F EN Q R +I L +V LV F L L + Sbjct: 435 ENIAFSENAADARPNWFERQAEHGSNFLRMQPVLIRTLGVVVCGALVCFFVLRPLGEQVS 494 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 +I P+ +I+ + Sbjct: 495 KALQPALPAPRTAIDLNIPVPPEGG---------------------------QISPSQVQ 527 Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552 + + + I + ++ A++L W S Sbjct: 528 STFEAVKNQIRSDPQQSARLLESWIGS 554 >gi|296283238|ref|ZP_06861236.1| flagellar MS-ring protein [Citromicrobium bathyomarinum JL354] Length = 514 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 117/511 (22%), Positives = 216/511 (42%), Gaps = 24/511 (4%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 +S LY L+ + I+ L N+ F +S +G+++ P + + + R+ +A + L Sbjct: 24 SSDKMGYLYTDLDPTAAQAITEKLRAQNVPFSLSGDGTAVMAPENRLPELRMSMAGEQL- 82 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 GYE+ D +FG++S +++ RA+EGE+ R+I ++ IV ARVH+VMP+ Sbjct: 83 --GGAIGYEVLDTQQAFGVSSSREKMNETRAIEGELGRSIATLQSIVNARVHLVMPERAL 140 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 F + +ASV ++ + EAIR+LVAAAVP L ++++D TG LL Sbjct: 141 FAPEARKASASVTVKTRGKLSSGNVEAIRYLVAAAVPELSPESISIVDQTGALLARAGEA 200 Query: 224 RNILGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282 Q A + I I + +GV R+ V AE++ D + V+DPD+ Sbjct: 201 GEAGASQADERQVATEARIRSQIEALIEPIVGVGKVRAEVSAEIDRDQTREESEVFDPDT 260 Query: 283 KVERSIRLSKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-TDKKEEQSNYEI 340 +V + ++ E + VTV +P D + E+ ++ E ++ Sbjct: 261 QVIARQISVESGDQNRENAGATPGVTVGAQLPEGGDVMGGGGDTRESARNETSEDITFQN 320 Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 +++ TT K+ RL++AV+V+ G QG + + ++V A G ++ Sbjct: 321 SSRRTLTTRTPGKVSRLTVAVMVDGGE----------QGLPAPQVQRLTRLVENAVGYDA 370 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 RGD++ + SM F + L + F L L+ +V L L Sbjct: 371 ERGDSVIVESMPFAQPDEIADAEGDFWSDLPLGQLFD-----LGKLLVIAVVGLFVLRML 425 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R + A + + + ND S + +++ Sbjct: 426 RPKNVPASAAGQLPSPEQNVIDLTPEGRGGEEQLENDGAPALSGPE---LDDEIALAQVE 482 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + + ++ + + A ++R+W Sbjct: 483 GKLKASALKKIGDAVAASPAESAAVVRQWLS 513 >gi|150019080|ref|YP_001311334.1| flagellar MS-ring protein [Clostridium beijerinckii NCIMB 8052] gi|149905545|gb|ABR36378.1| flagellar M-ring protein FliF [Clostridium beijerinckii NCIMB 8052] Length = 522 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 97/524 (18%), Positives = 203/524 (38%), Gaps = 52/524 (9%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 F+ +S Y L+ L+ +D + +L+E +D +I N ++I VP V K R+ LA Sbjct: 41 IFYSSSNKYQVLFSDLDAADAQTVVNSLNEKKVDTKIDSNTNTIWVPKDQVDKLRLELAP 100 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +S + GYEL D +SFG+T +I +VR +GE+ +TI+S + ARVHI Sbjct: 101 ---TLTSGSKGYELMDSGSSFGMTDEEFKIKKVRMQQGELEKTIKSFPQVEEARVHITEA 157 Query: 160 DMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 F K A+V ++ + ++I LV+ A N+ ++ V+D LL Sbjct: 158 KDSVFVKDKEPGKAAVYLKLKKGTTIGEDQVKSIVALVSGATENIPRENIDVIDDNMNLL 217 Query: 218 T-------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270 T N + + K + + ++ I L +G ++ V L+ D+ Sbjct: 218 TKDINSDKNNSVSSEAISKQQDAEKNYEDRMQKAIVSLLEPIVGKGKVKATVNVNLDFDS 277 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 +Q + V DP+ + +S++ + + +A + ++S+ + + Sbjct: 278 KQKTQTVVDPNK-----VIVSQENSKETNNSGSTATSQSPVDNNMSNTTTATNNNPSASS 332 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K+++++NYE+ +++RL+ +V+V+ + + Sbjct: 333 KEDQKTNYEVGKSESKVISAPGEVKRLTASVMVDGN-------------LDAATQQTLEN 379 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 V A G+++ RGD +++ M F + + + + + + ++G L Sbjct: 380 AVGNAIGLDALRGDKVSVVGMAFDTTAQDQAKSEIDAMNAEAATAGKNKMMIVAGVLGAL 439 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 L+ + RR + + + + P S + ++ Sbjct: 440 LLGMVIFFIARRRKKNKEENEELLNTLIDDTILPKESDEVFEPIEFESKT---------- 489 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + E+ +I++ W Sbjct: 490 ------------QKSHLEEEIKRYATEKPEQVVEIIKSWLTENE 521 >gi|304316908|ref|YP_003852053.1| flagellar M-ring protein FliF [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778410|gb|ADL68969.1| flagellar M-ring protein FliF [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 505 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 102/561 (18%), Positives = 197/561 (35%), Gaps = 71/561 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I Q+ F+ + + + + + L+ I + +N P+Y+ LY L V D Sbjct: 7 NIRSQINNFWNKF---DKKQKIQIGIISLLLISSIALLVYIINRPNYEVLYSDLSVKDAG 63 Query: 62 RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L E I ++I NGS+I VP+ +ARI LA +G+P + + NS Sbjct: 64 AVVDKLKNELKIPYKIEGNGSTILVPAQYKDEARIQLATEGIPQDGFSFSDAM---NNSL 120 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF----RKIGARPTASVM 176 T ++ + ++ EI T+++I G+ A+V+IV+PD +F + + Sbjct: 121 ATTDQERKQKYIYFVQNEIQNTLKAIDGVQDAKVNIVVPDENNFVLSNNDNSSTAAVMLQ 180 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235 ++ + I + V+ +V L VT++D GK+L A + ++ Sbjct: 181 LKPGVTLTNQQINGITNFVSKSVEGLSPDKVTIIDGNGKVLVAQNDNSLDGASSQYALQM 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q++++ NI L G N LN D Q ++ + P ++ + RS + K Sbjct: 241 KVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTIK 300 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + ++ N P S N K + NYEIN T Sbjct: 301 EIANGSSNGA--PAGTATNNPPGSTTYTTQNNGNSNYSKTDTTINYEINQIKTTLTSAQG 358 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K++ +S++VVVN + ++ +VS A G + ++++ + Sbjct: 359 KIQNISLSVVVNNNN------------LSPTMKQQLTDLVSNAAGGKNV---SVSVMGIK 403 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + L Q + + + + + N + Sbjct: 404 FNTDLLNQMKNTQKQTFPYVWLIILGALLLAGGVFYAM-----------KKKNKELIPAT 452 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + P D ++ Sbjct: 453 NLEEAMSTEEPGKEIEELDVTSEKDE----------------------------KMKQIE 484 Query: 533 HMIEINEERFAKILRKWARSE 553 I+ + A+++R W E Sbjct: 485 KFIKQKPDIVAQLIRTWLNEE 505 >gi|260772323|ref|ZP_05881239.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14] gi|260611462|gb|EEX36665.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14] Length = 500 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 93/517 (17%), Positives = 198/517 (38%), Gaps = 30/517 (5%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L E ++ + L + ++R+ +G++I VPS R+++ GL + Sbjct: 1 MRPL-GAFETEELIPVLDYLDQQKQNYRL--DGNTILVPSKDFNSIRLNMVRSGL-HQTR 56 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++G ++ + FG++ +++ + E ++A+ I+ + + ARV + +P F + Sbjct: 57 HAGDDILLQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQVNRARVLLALPQQSVFVRH 116 Query: 168 GARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +ASV + K ++I +VA+AVP + VTV D G+LL++ + Sbjct: 117 NQEASASVSLTLRTGMNLKQEEVDSIVDMVASAVPGMRPTRVTVTDQHGRLLSSGSQDPI 176 Query: 226 ILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283 + + + + + I+ L LG+ N+ + V EL+ + V+DP++ Sbjct: 177 ATARRKEQELERRQEENLRNKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKVFDPNTP 236 Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS-------LENTDKKEEQS 336 RS +D + N P + +E Sbjct: 237 ATRSEYTLEDYNNG--NVVAGIPGALSNQPPADASIPQDIAQMKDGSILGRGSVHREATR 294 Query: 337 NYEINTKSIATTHDNYKLERLSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 N+E++T + R ++AV + N+ + G+ Q +S + I ++ Sbjct: 295 NFELDTTISHERRQTGVINRQTVAVAIKNRAVVNPETGQVTYQALSESEINAIRTLLIGT 354 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G N RGD + + SM F E + + + + + +ALV +V L+ L Sbjct: 355 VGFNENRGDLLKVLSMQFAEPETDPLIDIPIWENPHFNDWVRWLASALVIIVIVLV---L 411 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 A+++L N ++ G L G + + Sbjct: 412 VRPAMKKLLNPVVDDDDQLYGPDGLPIGADGETSLIGSDIEGGDLFEFGSGIDLP----- 466 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 N + + + ++ E A++++ W ++ Sbjct: 467 ----NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 499 >gi|323341386|ref|ZP_08081630.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC 25644] gi|323091263|gb|EFZ33891.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC 25644] Length = 537 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 102/562 (18%), Positives = 204/562 (36%), Gaps = 42/562 (7%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + D L + L R + + ++ + + Y L+ L +D Sbjct: 1 MDKVKDALEALKAKWSELSRLVKIAIVLGVISLFAIIGTVYYMNTRVEYSVLFSNLSEAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118 IS L NI ++++D+G +I V + V + RI LA LPSSS G+ELFD + Sbjct: 61 AGTISQDLDSQNIKYKLADDGKTIMVDKTKVDQYRIDLAVDNKLPSSS--KGFELFDSAS 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS--FRKIGARPTASVM 176 T ++I RAL GE+ +I ++ + A+V++ +P + + AS++ Sbjct: 119 MM-TTDEDRKIMYQRALTGELENSIAALDDVDKAKVNLTIPKSDNVFDNSTSKKAKASIV 177 Query: 177 IRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKS 230 + + + I L AV LD +V V+D TGK+L NE + K Sbjct: 178 LTLKGTSISKDAVQGIVALTTGAVQGLDKKNVKVVDQTGKILNKNEEDDASDSSSATSKY 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + + ++E I + +G +++V +LN D + + Y +++ Sbjct: 238 MKLKSQYEKQMEKKITGLIEPVVGKGKVKASVNVDLNFDAVEKKITNYSNPQIRSENVQA 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + +Q N+ + + N E+NT++ + Sbjct: 298 SGKQAEIKQAQTGQVNDNVDNV---------TGDANNDNASYNRTVNNELNTETTKVINA 348 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 + R++ +VV+N I K++ A G + +RGDT+++ + Sbjct: 349 PGSINRMTSSVVING-------------DLSAGDARNIRKLIQGALGYDKQRGDTVSVQA 395 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 ++F + TV + ++ + FL + RRL ++ Sbjct: 396 VNFARAKSTKKKTVAKKPVKKT-NWVLIGALIAAGVLTLGTIIFLVIRRRRRLAEEEEEY 454 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + D L + + +++ R Sbjct: 455 YDDDYDVDVTDEGEEEEEAEEAAEELDPEILAEQERQRKETETKRKIAVSTE------QR 508 Query: 531 LLHMIEINEERFAKILRKWARS 552 + + A ++ W + Sbjct: 509 AKEYATKHPDVVADLISAWVKE 530 >gi|213622939|ref|ZP_03375722.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 344 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 8/330 (2%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ I+ I Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251 Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304 L+ +G N + V A+L+ ++ E Y P+ ++ S+ SE P Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 N P + + + Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNT 341 >gi|11095419|gb|AAG29859.1|AF313764_2 flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 619 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 111/614 (18%), Positives = 223/614 (36%), Gaps = 81/614 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++++ + K + + ++ + F +++P +LY D Sbjct: 32 DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRA 91 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ AL I + I I+V KAR LA QGLP S+ + + + G Sbjct: 92 SIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVHVI--SSLPLG 149 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 + ++ A E +ARTI++I + ARVHI P F + TASVM++ Sbjct: 150 ASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238 +AI++LVAA+VP + V+V+D G LL+A + +I + L + Q ++ Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +NK L LG +N+ + V +L+ Q Y + + + Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327 Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320 Q NMP Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387 Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + + YE+ + + ++R+S+A+ + + Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 ++ +L+R+ + LV L++ L+ + ++ L I + Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + G P + + D+ + ++R++ + H ++ + R A ++ Sbjct: 554 LIAEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604 Query: 548 KWARSEIEDRYTQH 561 RS+++ + Sbjct: 605 DMMRSDLKSLENHN 618 >gi|168698710|ref|ZP_02730987.1| Flagellar FliF M-ring protein [Gemmata obscuriglobus UQM 2246] Length = 523 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 113/558 (20%), Positives = 204/558 (36%), Gaps = 44/558 (7%) Query: 1 MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVS 58 M + ++LL Q L R + + L ++ A + Y L L Sbjct: 1 MDVFNRLLEQARAYWAGLSAGRRIGVVLSFLGVLLALGAVVYLSPGGRYTPLGAGPLPPE 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 DV+ + LS I FR+S G+ I VP +A + LA G+P+ G+E+FD+ + Sbjct: 61 DVSAMRTRLSGDGIPFRLSSGGTGIEVPDERYAEAVVSLAGAGIPARGGK-GFEVFDETS 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 T F+Q + RAL+ E+AR+I + + +ARV I P+ F + PTASV+I+ Sbjct: 120 -LMTTPFVQSVNYQRALQAELARSIMQMESVQSARVMIAKPEPSPFVRDQKNPTASVVIK 178 Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIV 234 +A AI LVA ++ L +VTV+++ G+LL+ + L + Sbjct: 179 LKPRMTMNPATAGAIVSLVAHSIEGLRPENVTVMETGGRLLSDPNAAARSGLPTPQLEYI 238 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + ++ + + L+ LG V A++N + R Y PD +V + R + Sbjct: 239 ERLETYLSTKAEEMLSKTLGPGRAVIRVSADVNFQKIKERVKTYSPDGRVGVAERTA--N 296 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 S ++ N+ + ++ Q+++ ++ + + Sbjct: 297 STSTGTRAGGVTGATANITRTGGSTANAGSGGGTSKEEVIQTDFLVSETLRDIEEGSGAV 356 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 RLS+A +V+ LT G++ + + A G R D++TI Sbjct: 357 TRLSVAALVD---LTAADGQAVISQADAEEI------IRQAVGFRPGR-DSVTIARAPLT 406 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + + + N V L +GL LRR Sbjct: 407 GPNA-GEPDDTLVRLQRIQTYVSLARNLSVAFAAVLSFLVIGLLLLRRR----------- 454 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 P P + T + + + + R N+ +R M Sbjct: 455 -------PVPEAQGATGTEPGAETAGAGPTGPVAPTPPPTTEERRNAE-----LIRFQTM 502 Query: 535 IEINEERFAKILRKWARS 552 +L Sbjct: 503 ARNEPATVVHVLSVMLGE 520 >gi|307293804|ref|ZP_07573648.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1] gi|306879955|gb|EFN11172.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1] Length = 587 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 114/575 (19%), Positives = 228/575 (39%), Gaps = 55/575 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D L F + +L + AA + P +L+ L +D + ++ Sbjct: 35 DALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAVA 94 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L ++ I + ++G +V KA++ LAAQGLP S + G + D + G + Sbjct: 95 QVLDQSGIRYDFDNSGGM-TVGEDDYFKAKMMLAAQGLPKS-APDGNSMIDSLP-MGASR 151 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ A E ++ARTI++I + +A+VH+ + F + ++P+ASVM+R Sbjct: 152 AVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGRS 211 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + AI HLVA+++P L+ D++V+D G+LL+ N+ + L++ ++ Sbjct: 212 LTDQQVSAIVHLVASSIPELNPEDISVVDQNGRLLSNNDGNA-ADDRQLAVQTKMEDRYR 270 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSET 299 ++ L LG F + V AELN +Q Y D R+ S + + Sbjct: 271 QSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRTETGSWQSDPRGQGAG 330 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--------------------KKEEQSN-- 337 + N V+ + + K EE N Sbjct: 331 GEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTQSAQTAAQPGTPGNPLMKTEETFNRS 390 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 +E+ + T ++RLS+AV ++ G + + +A + +V A G Sbjct: 391 FELGREVSVTKDAIGTVKRLSVAVALDNGADGK--------PRTAQEIAALEALVKGAVG 442 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + RGD + ++S F + ++ + + ++ L R+ + ++ AL+ + G Sbjct: 443 FDQARGDVVALSSRSFAKEEVVEAPWYEAEWVSPLVRNVSALLVALLLIFGI-------- 494 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 R L A + ++ + I ++T + + D S Sbjct: 495 --GRPLLKRRAAAQAAAAEQTAVVGQKIGREISTEITRQATVNPDGSTPVTLDMIS---- 548 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++Y Q + + ++ + +R A ++R + Sbjct: 549 --STYDYAQRADLIRNFVKQDPDRAALVVRDLLKE 581 >gi|237751136|ref|ZP_04581616.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879] gi|229373581|gb|EEO23972.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879] Length = 563 Score = 266 bits (678), Expect = 9e-69, Method: Composition-based stats. Identities = 104/575 (18%), Positives = 218/575 (37%), Gaps = 30/575 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-------NSPHYDNLYV 53 M Q L R + +++ ++V + + + L+ Sbjct: 1 MDFKAIFTQLQNLIKKLNRKQQIVILVTVVVFVAFLSYLIVSSLGSKKGDSVDGFGILFS 60 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 +D L + NI +++ ++ ++I+VP V R LAAQG+ Y++ Sbjct: 61 AENPADAGSAISYLKQQNIPYKMIND-NTIAVPQDQVFVLRNELAAQGIIK--GRVDYDI 117 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 F++ + FG T ++ ++RA++G++ +T+ +++ I ARV I P F K A P+A Sbjct: 118 FNENS-FGATQSEFDVKKLRAIKGQLEKTLMALAPIQDARVEIAEPKDDVFVKTRAVPSA 176 Query: 174 SVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILG 228 SV + + I++L+A + L +V ++D G L + E Sbjct: 177 SVALTLRDGMTLTQNQIFGIQNLIANSFNGLKPENVIMVDQYGNPLNKRDEATIENEQAF 236 Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K+ + + EI I ++L+ G D +V + + Q+ E +Y +S V Sbjct: 237 KNFAYKVQAEQEIANKIRQSLSRLAGGTDRMTVSVNLDYDFGKQESTEEIYSKESAVASE 296 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + P V N+ V D + E + + NY + K+ Sbjct: 297 SGKEIERKGLAPKDPGGVPGVINNIAEVKDLDS---NNREEYRESQFVKNYMPDKKTTTM 353 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYLAEINKIVSAATGINSRR 402 +L+R+++ VV++ E + LAEI KIV A++G + R Sbjct: 354 RLQTPQLKRMTVGVVIDGTYTEETNEETGFITMKYTPRSPEELAEIKKIVEASSGYDESR 413 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 D +++ + SGT ++ + +++ + + L+ +LV + ++ Sbjct: 414 NDIVSVIAGQLNA---IGSGTPPLTNFEKVAQAVEKYLGPFMPLLRYVLVVIVLFFFYKK 470 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + + EV + P+ N + ++ ++ Sbjct: 471 VIAPFAERMLEVHEEEETEKQPLFDFDDDDDTLNRANEMRKRVEEQLGIGGGFNE--DAV 528 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557 ++ + + A + + R EIE + Sbjct: 529 KYDVLLEKIKEAVRTKPDEIAGLFQALIRDEIEMK 563 >gi|160902819|ref|YP_001568400.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95] gi|160360463|gb|ABX32077.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95] Length = 516 Score = 266 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 94/555 (16%), Positives = 203/555 (36%), Gaps = 55/555 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q +L + +++ + L + ++ +Y+ L+ ++ I Sbjct: 5 MQQIRDWWKNLEDRKKRNYIVLLITVVALIVFFSILLSRKNYEFFIGGLDQANAGNIVTK 64 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L E I++++ D G+ I V + V + R+ LA++G + GYEL + FG TS+ Sbjct: 65 LEEMGIEYKVDDFGN-IYVANQNVSELRMKLASEG-SLGYNLQGYELL-QNQGFGATSYD 121 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPS 183 +++ ALEGE++R+I S+ + +ARVH+V+P ++ + + +++ Sbjct: 122 KQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQVGESPKPSASVLLVLNPGASV 181 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHE 240 + I +LVA AV L ++ V+D+ L+A + + I+ Sbjct: 182 TSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIERY 241 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSKDAQRSE 298 + + L + G+ N ELN + + + +P D + +K Q S Sbjct: 242 YKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTEQSSS 301 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK-SIATTHDNYKLERL 357 + V+ N+P + + + + +NY++N + N ++ Sbjct: 302 SPNSGGVPGVDSNIPPYTYQTPTSTGN--YYSSSDVITNYDVNEIYTRTIEDKNGEISNK 359 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 SI + ++ ++I V+ A G D I++ + F + Sbjct: 360 SITIFIDFQNSKVGD--------SQELRSQIKTAVATAIGTPE---DNISLVDIQFNRDL 408 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL-HALRRLHNIDDAKKGEVGG 476 ++ R VI +V +LV + +R+ + + +K E+ Sbjct: 409 EAMRADIEYQLQLRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKRELES 468 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 + + V + + + E Sbjct: 469 RVEEAMKERGVEVEEVSPEQERF-----------------------------REIATLAE 499 Query: 537 INEERFAKILRKWAR 551 N + A I++ W + Sbjct: 500 NNPDEVADIIKSWLK 514 >gi|15615021|ref|NP_243324.1| flagellar MS-ring protein [Bacillus halodurans C-125] gi|10175078|dbj|BAB06177.1| flagellar basal-body M-ring protein [Bacillus halodurans C-125] Length = 525 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 103/563 (18%), Positives = 206/563 (36%), Gaps = 66/563 (11%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + + + + +++ +L+ I+L FF HY LY L + + I L Sbjct: 11 RVTEYWRNRTKKQQMVIVGAVLLIIILLAFLTFFSTRTHYVPLYSNLTLQETGNIKETLD 70 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 I I+++G++I VP + V ++ LAA+GLP S Y F FG+T Sbjct: 71 ARGISSEIANDGTTILVPETQVDALKVELAAEGLPQSG-TINYSTFRDSMGFGMTDNEFS 129 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN--PSVY 185 + A+E E+A I+S+ G+ A V I +P+ + TASV++ Sbjct: 130 LMERAAIESELADLIRSVDGVNQANVMITLPEQTLWVSDSQQEATASVVVDLAPGFQLDA 189 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHE 240 A+ HLV+ +VPNL + ++ +++ + ++ + +I + I+ + Sbjct: 190 SQVRALYHLVSRSVPNLPIENIVIMNQMFEDYLYDDHHSTGSTLSVYEQQRAIQRDIERD 249 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSKDAQRSE 298 + N+ + L +G D +V +++ + +E +P + +E ++ + Sbjct: 250 LTRNLQQMLGTLVGRDKVLVSVTTDIDFTQENRQEERVEPVDEENMEGIAVSVENITETY 309 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + +E + + + + E++ NYE+N YK+ L Sbjct: 310 SGEGTPEGGIEGVGDDIPNFPGVYGTGEVDYELTEDRINYEVNRIRSDIVESPYKIRDLG 369 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS--------AATGINSRRGDTITITS 410 I V+ + G + + +I V AA + + I ++S Sbjct: 370 IQVM-----VEPPEGMEELPADRLADIQQILGTVVRTSISGVYAAELTDDEFNEKIFVSS 424 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 F +G V +V + + FL + +RR + D+ Sbjct: 425 QPFEGKADLETGAGSS----------VPVWVYVVGGILLATIIFLIVLLVRRRGDSDEDL 474 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + G + P TG Q + Sbjct: 475 MDDDGALTEEIPDLPQEEEGTG--------------------------------AQKRKQ 502 Query: 531 LLHMIEINEERFAKILRKWARSE 553 + M + E F+K+LR W + Sbjct: 503 IERMAKERPEEFSKLLRTWLSED 525 >gi|18642464|emb|CAD22875.1| basal-body M-ring protein [Erwinia chrysanthemi] Length = 357 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 5/323 (1%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F + L + L I + +A + P Y LY L D I L Sbjct: 13 KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + NI +R +++G++I +PS V + R+ LA QGLP + G+EL D+ FG++ F + Sbjct: 73 GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185 +I RALEGE+ART++++ I ARVH+ +P F + P+A+V + Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244 AI +LV+++V L VTV+D TGKLLT N+ + L ++ + Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 I L +G N + V A+++ +++ + Y P+ ++ S+ +S+ + Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310 Query: 305 AVTVEQNMPHVSDRKVPLPRSLE 327 V + + P S Sbjct: 311 VGGVPGALSNTPTPAPTAPISTP 333 >gi|294013069|ref|YP_003546529.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S] gi|292676399|dbj|BAI97917.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S] Length = 583 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 113/575 (19%), Positives = 226/575 (39%), Gaps = 55/575 (9%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 D L F + +L + AA + P +L+ L +D + ++ Sbjct: 31 DALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAVA 90 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + I + ++G +V KA++ LAAQGLP S + G + D + G + Sbjct: 91 QVLDQNGIRYDFDNSGGM-TVGEDEYFKAKMMLAAQGLPKS-APDGNSMIDSLP-MGASR 147 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 ++ A E ++ARTI++I + +A+VH+ + F + ++P+ASVM+R Sbjct: 148 AVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGRS 207 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 + AI HLVA+++P L+ D++++D G+LL+ N+ + L++ ++ Sbjct: 208 LTDQQVSAIVHLVASSIPELNPEDISLVDQNGRLLSNNDGNA-ADDRQLAVQTRMEDRYR 266 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSET 299 ++ L LG F + V AELN +Q Y D RS + + + + Sbjct: 267 QSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRSEQGTWASDPRGQGAG 326 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--------------------KKEEQSN-- 337 + N V+ + + K EE N Sbjct: 327 GEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTESAQTAAQPGTPGNPLMKTEETFNRS 386 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 +E+ + T ++RLS+AV ++ G + + +A + +V A G Sbjct: 387 FELGREVSVTKDAVGTVKRLSVAVALDNGPDGK--------PRSAQEIAALEALVKGAVG 438 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 + RGD + ++S F + ++ + + ++ L R+ + ++ AL+ + G Sbjct: 439 FDQARGDVVALSSRSFAKEEVVEAPWYEAQWVSPLVRNVSALLVALLLIFGI-------- 490 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 R L A + + + I ++T + D S Sbjct: 491 --GRPLLKRRAAAQAAAAEQIAVQGQKIGREISTEIGRQATANPDGSTPITLDMIS---- 544 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++Y Q + + ++ + +R A ++R + Sbjct: 545 --STYDYAQRADLIRNFVKQDPDRAALVVRDLLKE 577 >gi|302872571|ref|YP_003841207.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis OB47] gi|302575430|gb|ADL43221.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis OB47] Length = 560 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 105/569 (18%), Positives = 218/569 (38%), Gaps = 29/569 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + D L + + +++ ++ + ++ +AA + PHY ++ L+ + Sbjct: 5 LNDFLKNIREKWANFSKSQKIMFIISSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I LSE ID + ++ G++I V + V +A++ A G P +SS + + +S Sbjct: 65 IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124 Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + T ++ E EI ++ + I A V++ +P+ +F + +PTASV + Sbjct: 125 TESDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSIPEDYTFALKDEATKPTASVKLTL 184 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237 E I+ VAA+V L +V ++D+ G L+ N + + K L I A Sbjct: 185 KKSLGSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQIKVAT 244 Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293 ++EIE + + L ++ ++ + +V ++N D Q+I E Y P DS + S + +K+ Sbjct: 245 KNEIEKKVKELLGNYVNSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 +S S + N + + K +E NY+ N K I T Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTTQYPITSQGGQSTYTKSDETVNYQNNEKKIETIKAPG 364 Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406 + + V+ T+ +DQ K ++ + + Sbjct: 365 TINYDKSSIAVVLYRYITYTQEDFEKSDQAKNMTWAQFKLQNQNNKRPFLTDQKEIETIV 424 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 + + G +F+D R ++ + + LL+ + L + + Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDRPQRQIP--VDYIYVALAFLLLMVFAISLLIK-ASR 481 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 ++ E+ G + L + + + + Q Sbjct: 482 GKSRTVELAGVGPVEISEEKPVAEGILQEAEKRKEAEVEEI----------NVEEFGVNQ 531 Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ ++ E A++LR W + E Sbjct: 532 YEKQIDKLLREKPEIVAQLLRNWLNEDWE 560 >gi|157364749|ref|YP_001471516.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO] gi|157315353|gb|ABV34452.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO] Length = 536 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 103/569 (18%), Positives = 213/569 (37%), Gaps = 53/569 (9%) Query: 1 MAILDQLLQ----FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M L ++ + F++ L R ++ + + + I++ + FV +P Y L L Sbjct: 1 MEFLKKIQEYLKGFYEKWKGLPRGNKILFSGIAVSIIIVGILTIIFVAAPRYTLLVSGLT 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115 + L +++++ + V V + R+ LA+ G+ ++ G+E+ D Sbjct: 61 DEQSGYLIQQLETMGVEYKVEP--GRVLVSDKYNVYELRMRLASMGV-LGATTKGFEILD 117 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPT 172 + SFG TSF +++ AL+GE+ R+I +ISG+ +ARVH+ +P + + + + Sbjct: 118 Q-QSFGATSFDKQVRYQVALQGELERSIMTISGVRSARVHLTLPKYTYYVRGEMAEPKAS 176 Query: 173 ASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILG 228 V+++ + I LVA AV + + +V V+D ++L+ + + Sbjct: 177 VLVVLQPGQDLSQNQIKGIMVELVAGAVEGMKLENVKVIDQMSRVLSDKVTASQDMLLAS 236 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + +++ + I + L + G +LN + + + Y+P ++ + Sbjct: 237 NRAELKMSLESYYQKKIKQTLESVFGPSRVEVIPDIKLNWERVERQLTKYEPATRQGGIV 296 Query: 289 RLSKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 R + + P AV + N+P S ++ +NYE+NT Sbjct: 297 RSQEQESEKSANLPATGGAVGTDSNIPPTYPTTTSQGTST--YERSHTITNYELNTVVEN 354 Query: 347 TTHDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--GINSRRG 403 + +++ LS++V+++ S Q ++ IVS GI + Sbjct: 355 VVQNKEGEIDTLSLSVIIDASS-------SVFQNFDEAERERWANIVSDLVEKGIGANSS 407 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D S+ FL Q S +I + T++ V L+ L L ++ Sbjct: 408 DPNLAVSVAFLPFDRTFEEEYQKSLSEIERKRRFTMMVTGVSLLFALGFMLFYLMIIQFR 467 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 E K + + + AL ++ Sbjct: 468 RIRSRRLIEERKLKMEEELKKVFEEEEEVPLTPEQQALLELKEN---------------- 511 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARS 552 L + + E A I++ W Sbjct: 512 -------LEKIYRESPEEVANIIKLWLVE 533 >gi|322382303|ref|ZP_08056210.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153656|gb|EFX46031.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 527 Score = 263 bits (671), Expect = 7e-68, Method: Composition-based stats. Identities = 97/568 (17%), Positives = 218/568 (38%), Gaps = 58/568 (10%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +++ Q++ + + + L + + I+ + ++ Y + L+ + Sbjct: 1 MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + I +++S +G SI VP++ V + +I + ++GL N GY +FD+ Sbjct: 61 AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNK-GGNVGYGIFDQSG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMI 177 SFG T E+ ++ A++GE+ + I S I ++V I +P+ G F + +ASV++ Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179 Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKS 230 + + I +LV+ +V NL + ++T+ D G+ + + + Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSKVE 285 + + + +++ NI LA G + VV+ +N D ++ +E + D +E Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 S++ + + S+ + N V + +++ ++ NYE+N + Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTN--DVPGYESTSNSGNSKSEENQKTVNYEVNRITN 357 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 Y ++ L+I V ++ + G+ + +++ + I K A +G+ + D Sbjct: 358 DIIRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD- 416 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++ ++ S + + + + L + + ALRR Sbjct: 417 --------IDKKVTIIPKELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKK 468 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 ++ E + + N Sbjct: 469 NLLEEEEEYITTGQQQMEYPTIDIE-----------------------------NVTNDN 499 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 Q +L + + E F +LR W E Sbjct: 500 QVRKQLETLAKKKPEEFVNLLRTWLVDE 527 >gi|82523970|emb|CAI78781.1| flagellar biosynthesis/type III secretory pathway lipoprotein [uncultured epsilon proteobacterium] Length = 572 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 105/491 (21%), Positives = 202/491 (41%), Gaps = 21/491 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56 M Q T L + + +I+A+ I+ + + + + ++ L+ L Sbjct: 1 MDFKVLFSQLVVLYTKLTKQQRIIIAAAIIGIVGFLIFMVVYTSKNTKESKFEVLFDSLS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 +D ++ L + I++ I DN + I VP +V K RI +AA G+P S G+ELFD Sbjct: 61 SADAAKVVEQLEKDGIEYEIEDN-NVIRVPRDVVYKQRISIAALGIPKDSG-VGFELFD- 117 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG TSF Q I +RALEGE++RTI +++ I +A V + +P F + PTASVM Sbjct: 118 TQEFGATSFDQNIKYLRALEGELSRTINALAPIESASVSLALPKETLFVEKSVSPTASVM 177 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSL 231 I K I++LVA+AV L +V +++S G+ L + + Sbjct: 178 ITLVEGRNLSSKQVRGIKNLVASAVTKLTPANVMLVNSDGETLGDEDEMAQMGELSSVQQ 237 Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290 + + + + I + L+ F+ G + V E + + +DP++ V Sbjct: 238 KYKEKEEKKRQKKIIQVLSPFVGGTKKVVAQVTIEFDFSIKNSTSETFDPENVVRSEQNS 297 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + + ++ N+ V K ++ E +K +NYE+ T Sbjct: 298 EEKREGGAPAEVGGVPGTVSNIGPVQGLK--SNQTSEKYEKSTGTTNYEVGKTVSTTKSQ 355 Query: 351 NYKLERLSIAVVVNKGRLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 ++ R++ AV+V+ + ++ + I+ + ++ GI+ RGD Sbjct: 356 FARINRITAAVIVDGKYKNKLNADGVPTEELEYLPLDETDIQAISSLAGSSIGIDEARGD 415 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 +++ ++ F +++ + + A ++ +L+ L + Sbjct: 416 QLSVKNLQFKRDKVSVGEDGVSQALVFSETYLAPFSGLFKYIFVLILLLILYKKVISPFA 475 Query: 465 NIDDAKKGEVG 475 E Sbjct: 476 QRMLEISKEEE 486 >gi|226225737|ref|YP_002759843.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27] gi|226088928|dbj|BAH37373.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27] Length = 540 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 119/571 (20%), Positives = 218/571 (38%), Gaps = 56/571 (9%) Query: 7 LLQFFKSGTS-LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 + +S T LG R ++ +V +V L + P LY + V V ++ Sbjct: 1 MNSLLESLTGRLGGARQAMIIAVGVVVTALVFGVSRWATKPTMVPLYADVPVEQVKAMTD 60 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L+EA I + + GS+I V S+ + +AR+ LAA +P+S G ELFDK ++G+T F Sbjct: 61 KLTEAGITYELDRTGSTIMVQSADLARARVDLAAGTVPNSGRP-GLELFDK-PTWGMTDF 118 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 Q++ RALEGE+ RTI + + + +VH+ + D F++ ASV + N Sbjct: 119 TQKVNYRRALEGELERTISKMKDVKSVKVHLAIEDDQLFKQNERPSKASVTLAMNNSIAP 178 Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEI 241 ++ I LVA++V L+ VT++D G+ LT + + LS+ + + + Sbjct: 179 RAEAVRGIASLVASSVGGLEPEHVTIVDERGEALTMEDDGSMAGLTSRQLSVQREAESYL 238 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301 E +K L++ +G N R V A +N D + DPD + + + ++ + Sbjct: 239 EQKADKLLSSLVGSGNARVQVSASMNFDKVERTVQAVDPDRQAIATEQKAEVTPSNPQQG 298 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 + T YE T +++L++AV Sbjct: 299 AGYSTTATS---------------------------YENTRSVENFTGAVGNIKKLTVAV 331 Query: 362 VVNKG------------------RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 +V + + L I +V A G++S RG Sbjct: 332 LVADRVVLPPAAPVPADSAAAAAAAALPPVAPTIETRTPDELTRIEALVRNALGVDSTRG 391 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D I++ S F + L + +V + +++ L L + + Sbjct: 392 DMISVVSAPFDMPAPVVAVKETNPVPTDLLGRIQSNPKPVVAIAALVVL--LILALVTVV 449 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 ++ E +P +T + LD D + + +I Sbjct: 450 LLRPKKQQIEAPAVLPAAPAYAELPASTQMQQAMQEMLDEEPMDQMALIEEQRRQIVLPP 509 Query: 524 SKQSDLRLLHM--IEINEERFAKILRKWARS 552 + R M ++ + +++R W R Sbjct: 510 PPTTPEREQAMATVDQRPDAALRVVRNWLRQ 540 >gi|220917658|ref|YP_002492962.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1] gi|219955512|gb|ACL65896.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1] Length = 533 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 123/553 (22%), Positives = 219/553 (39%), Gaps = 39/553 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L QL + + +L L+L + LV I + + + Y + L D Sbjct: 4 LLKQLRELPRLLGALPAGLKLVLVAGALVAIGVAALSAVRSSE-AYQYAFTNLTPEDSAE 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL A + +R+ GS+++VP+S V AR+ LA GLP G+E+FD+ + G+ Sbjct: 63 AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDRGD-LGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + F Q++ RA EGE+ARTI ++ + +ARVH+ +P+ G +R A+V++ Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 IRHLV++AV L V+V+D G++L+ LG+++ + ++ + Sbjct: 181 RTLDQREISGIRHLVSSAVAGLAPAGVSVVDGRGEVLSDEGP----LGEAMGYQRRMERD 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +E I L +G + V A L+ Q V DPDS RS R S+ + Sbjct: 237 LERRIVDLLGQAVGPGAVVARVTASLDQTEVQSSAQVLDPDSATLRSERKLTQQSSSDGA 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P N P R + +++ NY+++T + + +LER+S+A Sbjct: 297 GPAGVAGAAANQPLAPPAPAAGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERISVA 356 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ +A + D+ +A + ++ A G ++ RGDT I+S F+ + Sbjct: 357 VLVDG---------AAGAPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 LL + + Sbjct: 408 PPPAPP---------------------PALLERPAVRWGALGAGALVGLALLAAALRRRR 446 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 +P I + + + + S R + + Sbjct: 447 APAAPEVLPIRPGARVAEIEAALARDAALPGAPPPRPAALADPSATLRDRARDLASQDPT 506 Query: 541 RFAKILRKWARSE 553 R A +L+ W E Sbjct: 507 RTAHLLKAWIAQE 519 >gi|89098644|ref|ZP_01171526.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911] gi|89086606|gb|EAR65725.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911] Length = 528 Score = 261 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 98/574 (17%), Positives = 209/574 (36%), Gaps = 69/574 (12%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + ++L +FF + S + + ++A +++ +++ AA LY L S Sbjct: 1 MKEKLQKFFNPLKEFWQSRTKKQKGLMAGSLILLLLIASAAVLLAGRTTMVPLYSNLSPS 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + I +L I I+D GS+I VP +V ++ LAA+G+P S S Y F + Sbjct: 61 ETGAIKESLDGRGIASEIADGGSTIMVPEEVVDTLKVELAAEGIPKSGS-IDYSFFSQNA 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI- 177 G+T + ++ A++ E++ I+ I G+ A+V I +P+ G F ++ ++ Sbjct: 120 GIGMTENEFNVLKLDAMQTELSNLIKGIEGVNDAKVMINLPEKGIFINDQTEEASASIVL 179 Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK---LLTANEMERNILGKSLS 232 + + +++ HL++ +VPNL ++ V + + L +N+ + L Sbjct: 180 NTKPGYQFETEQIKSLYHLISKSVPNLPTDNIVVTNQFFEYFDLENSNDTSGKTITAQLD 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERS 287 + + I+ +++ + L+ +G + +V A+++ + E + P + S Sbjct: 240 VKKQIERDVQRQVQSMLSTLMGPEKVVVSVSADIDFTQENREENLVTPVDEENMEGIAIS 299 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 + + + N +++ S + ++ EE N E+N Sbjct: 300 AKKITETFTGSAEEAGGIAGTGDN--EITNYPGAAEGSNGDYERIEETINNEVNKIRKEI 357 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--------IN 399 YK+ L I V+V + S Q ++D ++ IV + Sbjct: 358 VESPYKVRDLGIQVMVEPPTADDP--TSLPQERVDDITQILSTIVRTTIDKKAAGADLTD 415 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 D + ++ F F + V + + V ++ L Sbjct: 416 EDIADKVVVSVQQFQGKTEFPEESAAVIPWWV----------YAIGGVLVAIILLLVFLF 465 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 +R + + ++ ++ T Sbjct: 466 IRARRKSQEEQAELEEQVEPVTIKDVNEEQET---------------------------- 497 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 S +L M + E FAK+LR W + Sbjct: 498 ---ESSLRRKQLEKMAKEKPEDFAKLLRSWIAED 528 >gi|255022056|ref|ZP_05294062.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] gi|254968542|gb|EET26098.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756] Length = 599 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 113/599 (18%), Positives = 225/599 (37%), Gaps = 73/599 (12%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 F S + + L + I + + + V+ Y +Y L + AL Sbjct: 12 SDFRNWWHSRNQRQRLTILGGIALVLAASLGIGEAVSHTSYAVVYSGLSPQTGGSVIAAL 71 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I FR+ DNG+ I VP + + R+ LA QGLP+ ++++ + + G +SF++ Sbjct: 72 QKGGIPFRLLDNGNVIEVPKADAARVRLQLAEQGLPAQATSALWHQL-QNEKLGTSSFVE 130 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVY 185 T +RALE +++ I+SI G+ AA V++ +P+ F + P A+V ++ Sbjct: 131 HTTYIRALEAGLSKDIESIQGVEAATVNLAIPNRTPFLERMPSPKAAVTLKLAPGMMLTQ 190 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 + I HLVA++VP L G VTV+D G+ LTA L + Q ++ I Sbjct: 191 EQVYGITHLVASSVPGLKAGSVTVVDQYGRALTAKPTGSQSSAI-LRLQQRVESAYRKQI 249 Query: 246 NKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 LA + G N R AV A +++ Q + V + S + S +S Sbjct: 250 VDLLAPIVGGKRNLRVAVDANIDLSHTQKSFVT-YGMGHVVTAAVESSRTKGSASSSTFG 308 Query: 305 AVTVEQNMPHVSDRKVPLPRSL---------------ENTDKKEEQSNYEINTKSIATTH 349 N P + + + + + ++ +Y ++ T Sbjct: 309 IPGALSNQPPGNPQAPITAPATSAAPGLTLQEIRAMIPRSSQANQRFHYVLDKTVGFTKG 368 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSAD------------------------------QG 379 + ++L LS++V++N ++ SA Sbjct: 369 EPWRLTSLSVSVLINGKSISPTSAVSAKPVSASTVSGVSAATTSAVRPASKRRTLAGIPE 428 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 L ++ ++V+ ++ +G T+ ++ + + + + +S Sbjct: 429 YGPKTLLQLKRMVTNTIHASAPQG-TVVLSVLPYERPA----PIPHLPWWRRISPW---- 479 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 V + + L + L A + K+I S P S A ++G D Sbjct: 480 -------VVWSRLEWFLLGLIALLLFRKLAVEFMKQRKTIFSQQPSSDASSSGEDAPDKG 532 Query: 500 ALDSSNQDIFSHSRN------LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + S S + ++ +++ + +I + R +++R+W + Sbjct: 533 RSNVPPVQNVSPSIPLDHATLDLNGVSQASLEENLNTIKELIRSDTVRAVEVIREWIGN 591 >gi|261216584|ref|ZP_05930865.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1] gi|261319454|ref|ZP_05958651.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1] gi|260921673|gb|EEX88241.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1] gi|261292144|gb|EEX95640.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1] Length = 332 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 147/332 (44%), Positives = 213/332 (64%), Gaps = 2/332 (0%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + Q + LG +++ L V + + ++ P Y+ LYV L DVNR+ +A Sbjct: 2 IEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLA 61 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S GLTSFM Sbjct: 62 LGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFM 120 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 QEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA + Sbjct: 121 QEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAE 180 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNI 245 SA++IR LV AAVP+LD VTVLD+ G LL + N + S+ Q + ++ +I Sbjct: 181 SAQSIRQLVTAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSI 240 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S ++ ++A Sbjct: 241 RKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNA 300 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 VEQN+P + S E TD++EE +N Sbjct: 301 TGVEQNIPQEQIQNRNGESSTEKTDRREELTN 332 >gi|86157820|ref|YP_464605.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C] gi|85774331|gb|ABC81168.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C] Length = 533 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 125/553 (22%), Positives = 221/553 (39%), Gaps = 39/553 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L QL + + +L L+L + L I + ++ Y + L D Sbjct: 4 LLKQLRELPRLLGALPGGLKLVLVAGALAAIGVAALTAVR-SAEAYQYAFTNLTPEDSAE 62 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL A + +R+ GS+++VP+S V AR+ LA GLP G+E+FD+ + G+ Sbjct: 63 AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDRGD-LGV 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182 + F Q++ RA EGE+ARTI ++ + +ARVH+ +P+ G +R A+V++ Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180 Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 IRHLV++AVP L V+V+D G++++ + LG+++ + ++ + Sbjct: 181 RTLGQREISGIRHLVSSAVPGLAPAGVSVVDGRGEVIS----DEGALGEAIGYQRRMERD 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 +E I L +G + V A L+ Q V DPDS RS R S+ + Sbjct: 237 LERRIVDLLGQAVGAGAVVARVTASLDQTEIQSSAQVLDPDSATLRSERKLTQQSSSDGA 296 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P N P P R + +++ NY+++T + + +LERLS+A Sbjct: 297 GPAGVAGAAANQPLAPPAPAPGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERLSVA 356 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 V+V+ + Q + D+ +A + ++ A G ++ RGDT I+S F+ + Sbjct: 357 VLVDG---------AGGQPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407 Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480 + L + + + Sbjct: 408 APPAPPP----------------TLLERPAVRWGALGAGALVGLALLALALRRRRPPAAP 451 Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540 PI + + S L S R + + Sbjct: 452 EVLPIRPGARVAEIEAALARDAALPGAPAPRSAALADP-----SATLRDRARDLATQDPT 506 Query: 541 RFAKILRKWARSE 553 R A +L+ W E Sbjct: 507 RTAHLLKAWIAQE 519 >gi|220913732|ref|YP_002489041.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6] gi|219860610|gb|ACL40952.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6] Length = 532 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 111/558 (19%), Positives = 205/558 (36%), Gaps = 40/558 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I + + + + V ++ +A ++ P Y L+ L+ +D N Sbjct: 4 QITAFFTRMGSGIKGFSAAQRTLAIIGVAVLVLGTVALTSWLAKPAYTPLFSGLKDTDAN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + N+ + I++ GS+I VP V R+ AA S++ +GY L DK+ Sbjct: 64 GIVEQLRKDNVPYEIANGGSTILVPEEKVYDERLK-AAAAGLPSAAATGYSLLDKL-GVT 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RA 179 + F Q +T RALEGE+A TIQ++ G+ AA V + +P+ F TASV + + Sbjct: 122 SSEFQQSVTYKRALEGELATTIQAMEGVKAAAVRLAIPEKSVFVDKTPDATASVFVETQP 181 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 +A+ HL +AA+ NL +V+V+DS G +L+ Q Sbjct: 182 GTTLSPDKVQAVVHLTSAAIENLKPANVSVVDSQGNVLSTVGGGAAGSSS--KQAGEYQE 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 ++ L + +G N AV A++ ++ Q R + + V +K + T Sbjct: 240 RTTDSVKAVLDSVVGPGNATVAVAADVTGESAQQRSETFTAAADVPALSESTKSETYTGT 299 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + V N+ D + N +N + ++R +I Sbjct: 300 GGGAAGVLGPDNIA-----VPGGTNGNSTFDSTDSTKNNAVNKVTEDRIIPQGAVKRQTI 354 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE---- 415 +V +N+ V LA + +V++A G + RGD +T+ + F Sbjct: 355 SVAINQAAAAGVN------------LASVRSLVTSAAGADPARGDVVTVEVLPFSTAAAD 402 Query: 416 -NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + T++ A L+ L + + L + RR + G Sbjct: 403 NAAASLAEAKAEAEAAQQGELMKTLVIAGSILLAALALIVVALISWRRRQRREPVDLGIG 462 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 + + A T + + + ++ ++ M Sbjct: 463 IEYPVAPVTALEPAPATSAIQ------------LPLAEPLPLPGADVLDGERRRAQIEAM 510 Query: 535 IEINEERFAKILRKWARS 552 + + R A LR Sbjct: 511 VAESPARTADYLRGLMDE 528 >gi|257871289|ref|ZP_05650942.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2] gi|257805453|gb|EEV34275.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2] Length = 540 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 115/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + Q + +I+ ++ + + A + Y L+ L +D Sbjct: 1 MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118 IS L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N Sbjct: 61 AGTISKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ Sbjct: 119 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLT 177 Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 +S + I L + AV L +V V+DS G LT E E + K ++I Sbjct: 178 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 237 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + +E + K L G D F+ ++ +LN D+ + +++ YD +++ + Sbjct: 238 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 297 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + +Q + N+ E + E++T++ T Sbjct: 298 QGTVQEAQTGTVDDNVSNV---------TGTDGEGNNSYSRSVENELDTETTTTITAPGM 348 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +ER++ ++V+N + AE+ +++++A G ++ RGD I I DF Sbjct: 349 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 395 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + ++ + Q + ++ + ++ LV + + +RR D+ + Sbjct: 396 AQAEVDPAADPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDV 455 Query: 474 VGGKSILSPPPISSAVTTGLMPND----NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + P S + + + + S+ + + Q + + + Sbjct: 456 TEEMVTFAQPSAVSTGASPTVAQEVVFGGVGNRSAETKPAAPEASTQETAAEHSGEPTLD 515 Query: 530 R-LLHMIEINEERFAKILRKWARS 552 + + E N E A++++ W + Sbjct: 516 QTARNYAESNPEVAAELIKAWMKE 539 >gi|321315387|ref|YP_004207674.1| flagellar MS-ring protein [Bacillus subtilis BSn5] gi|320021661|gb|ADV96647.1| flagellar MS-ring protein [Bacillus subtilis BSn5] Length = 531 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 95/575 (16%), Positives = 208/575 (36%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177 GLT ++ +V+A + E++ I + GI +++V I +P F ++ + I Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKSSKVMINLPKDAVFVGEEQSAASASIVLQI 176 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + + HLV+ +VPNL ++ ++D ++ + + I Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288 ++ +I+ ++ L +G D +V A+++ + E + +P + S Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + + + N +K + NYE+N Sbjct: 297 EKVSETYQGDGAANGGTAGT-GEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 355 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398 YK+ L I V+V + ++ + + +I V Sbjct: 356 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDETQNQNLS 412 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ + I ++ F ++ T + S + + + V+ A + ++ +L+ Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +P + I L N++ Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---------- 497 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N +L M + E FAK+LR W + Sbjct: 498 -NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 531 >gi|311068142|ref|YP_003973065.1| flagellar MS-ring protein [Bacillus atrophaeus 1942] gi|310868659|gb|ADP32134.1| flagellar MS-ring protein [Bacillus atrophaeus 1942] Length = 530 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 94/573 (16%), Positives = 197/573 (34%), Gaps = 63/573 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+ + +T+ +++ S I+L F +S LY L + Sbjct: 1 MQLKNKTSEFWNNR---SKTQKVLMISSFAAIIILITVISIFSSSEKMVPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +SD G+ I VP V ++ LAA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPSELSDGGTVIKVPEEQVDTLKVQLAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179 GLT ++ +V A + E++ I + GI ++V I +P F + + +AS++++ Sbjct: 117 GLTDNEFDMLKVEATQTELSNLINEMKGIKNSKVMINLPKDAVFVGEEQSTASASIVLQM 176 Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + HLV+ +VPNL ++ ++D + + + I Sbjct: 177 NPGYTLDQSQVNGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSNGDAGSYADSYSSQQGI 236 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288 ++ +I+ ++ L +G D +V +++ + E + +P + S Sbjct: 237 KTQVEKDIQKHVQTLLGTMMGQDKVVVSVTTDIDFTKENRTEDLVEPVDKENMEGIAVSA 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + + + N DK + NYE+N Sbjct: 297 EKVAETYQGDNAANGGTAGTGDEDTTGYAQTDENSENG-NYDKSSNKINYEVNRIHKEIA 355 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--------GINS 400 YK+ L I V+V S + D + +V + + Sbjct: 356 ESPYKVRDLGIQVMVEPPDAKNTASLST--ERQDDIQKILATVVRTSIDKDSQDQELTDE 413 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 + I ++ F ++ + + S + I V L +++ + + Sbjct: 414 EINNKIVLSVQPFDGKVSLDTASEKSSVLP-----IWVYIAGGVLLAAIIVLIIMLVRKK 468 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R ++ + ++ + Sbjct: 469 R-------------------------------SNEDEYEEWTYETPQEPINLPDINEEES 497 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 498 ETEETVRRKQLEKMAKDKPEDFAKLLRSWLTED 530 >gi|167567191|ref|ZP_02360107.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 441 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 90/432 (20%), Positives = 171/432 (39%), Gaps = 21/432 (4%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +Y ++ E + +++ L I +RI + + VP + + +AR+ LAA Sbjct: 17 YLRYDEANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAA 76 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + G E D+ + G + F+Q++ R LE E+A+++ ++ + ARVH+ + Sbjct: 77 RGV-TGQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIA 135 Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + + ++ + AI +LVA +VPNL V+V+D TG Sbjct: 136 KSSSFVMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAF 195 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 L+A + G + E ++ LA LG+DNFR +V A +N D + Sbjct: 196 LSARVDLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAGVNNDRVEEMRE 255 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + + + + +++ N P + P + Sbjct: 256 QF---GEAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADGGVQ--RHATTR 310 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 Y + H +LE+LS+AVV+N + + LA I +I+ Sbjct: 311 QYAYDRNVTQIKHSRGRLEKLSVAVVLNNAVSP-----AKGKPWSAEQLAHIEQILRNGL 365 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+++RGD + ++S+DF + + +G LL+ L Sbjct: 366 GIDAQRGDQLVVSSLDFPAPN----APEPWWRERETLEQGGWYV---AYAIGALLLYLLV 418 Query: 457 LHALRRLHNIDD 468 L R Sbjct: 419 ARPLLRTLQQWA 430 >gi|257875991|ref|ZP_05655644.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20] gi|257810157|gb|EEV38977.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20] Length = 540 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 116/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + Q + +I+ ++ + + A + Y L+ L +D Sbjct: 1 MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118 IS L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N Sbjct: 61 AGTISKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ Sbjct: 119 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLT 177 Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 +S + I L + AV L +V V+DS G LT E E + K ++I Sbjct: 178 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 237 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + +E + K L G D F+ ++ +LN D+ + +++ YD +++ + Sbjct: 238 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 297 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + +Q + N+ E + E++T++ T Sbjct: 298 QGTVQEAQTGTVDDNVSNV---------TGTDGEGNNSYSRSVENELDTETTTTITAPGM 348 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +ER++ ++V+N + AE+ +++++A G ++ RGD I I DF Sbjct: 349 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 395 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + ++ + Q + ++ + ++ LV + + +RR D+ + Sbjct: 396 AQAEVDPAVDPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDV 455 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL---- 529 + P S T+ + + + N+ + ++ ++ S Sbjct: 456 TEEMVTFTQPSAVSTGTSPTVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLD 515 Query: 530 -RLLHMIEINEERFAKILRKWARS 552 + E N E A++++ W + Sbjct: 516 QTARNYAESNPEVAAELIKAWMKE 539 >gi|221309496|ref|ZP_03591343.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. 168] gi|221313821|ref|ZP_03595626.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318745|ref|ZP_03600039.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221323016|ref|ZP_03604310.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. SMY] Length = 531 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 95/575 (16%), Positives = 207/575 (36%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177 GLT ++ +V+A + E++ I + GI ++V I +P F ++ + I Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + + HLV+ +VPNL ++ ++D ++ + + I Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288 ++ +I+ ++ L +G D +V A+++ + E + +P + S Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + + + N +K + NYE+N Sbjct: 297 EKVSETYQGDGAANGGTAGT-GEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 355 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398 YK+ L I V+V + ++ + + +I V Sbjct: 356 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDETQNQNLS 412 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ + I ++ F ++ T + S + + + V+ A + ++ +L+ Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +P + I L N++ Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---------- 497 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N +L M + E FAK+LR W + Sbjct: 498 -NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 531 >gi|16078684|ref|NP_389503.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str. 168] gi|120324|sp|P23447|FLIF_BACSU RecName: Full=Flagellar M-ring protein gi|2633993|emb|CAB13494.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. subtilis str. 168] Length = 536 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 95/575 (16%), Positives = 207/575 (36%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 6 MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 63 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177 GLT ++ +V+A + E++ I + GI ++V I +P F ++ + I Sbjct: 122 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 181 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + + HLV+ +VPNL ++ ++D ++ + + I Sbjct: 182 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 241 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288 ++ +I+ ++ L +G D +V A+++ + E + +P + S Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 301 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + + + N +K + NYE+N Sbjct: 302 EKVSETYQGDGAANGGTAGT-GEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 360 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398 YK+ L I V+V + ++ + + +I V Sbjct: 361 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDETQNQNLS 417 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 ++ + I ++ F ++ T + S + + + V+ A + ++ +L+ Sbjct: 418 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 471 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 +P + I L N++ Sbjct: 472 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---------- 502 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N +L M + E FAK+LR W + Sbjct: 503 -NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 536 >gi|257866378|ref|ZP_05646031.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30] gi|257873106|ref|ZP_05652759.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10] gi|257800336|gb|EEV29364.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30] gi|257807270|gb|EEV36092.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10] Length = 540 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 116/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + Q + +I+ ++ + + A + Y L+ L +D Sbjct: 1 MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118 IS L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N Sbjct: 61 AGTISKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ Sbjct: 119 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLT 177 Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 +S + I L + AV L +V V+DS G LT E E + K ++I Sbjct: 178 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 237 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + +E + K L G D F+ ++ +LN D+ + +++ YD +++ + Sbjct: 238 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 297 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + +Q + N+ E + E++T++ T Sbjct: 298 QGTVQEAQTGTVDDNVSNV---------TGTDGEENNSYSRSVENELDTETTTTITAPGM 348 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +ER++ ++V+N + AE+ +++++A G ++ RGD I I DF Sbjct: 349 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 395 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + ++ + Q + ++ + ++ LV + + +RR D+ + Sbjct: 396 AQAEVDPAVDPQGNEPIAAAKGYLKYAIIGGIVLALFLVILMIVGVIRRRRKEDELEVDV 455 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL---- 529 + P S T+ + + + N+ + ++ ++ S Sbjct: 456 TEEMVTFAQPSAVSTGTSPSVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLD 515 Query: 530 -RLLHMIEINEERFAKILRKWARS 552 + E N E A++++ W + Sbjct: 516 QTARNYAESNPEVAAELIKAWMKE 539 >gi|167574616|ref|ZP_02367490.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786] Length = 448 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 90/432 (20%), Positives = 171/432 (39%), Gaps = 21/432 (4%) Query: 40 RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99 + +Y ++ E + +++ L I +RI + + VP + + +AR+ LAA Sbjct: 17 YLRYDEANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAA 76 Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159 +G+ + G E D+ + G + F+Q++ R LE E+A+++ ++ + ARVH+ + Sbjct: 77 RGV-TGQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIA 135 Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + + ++ + AI +LVA +VPNL V+V+D TG Sbjct: 136 KSSSFVMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAF 195 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 L+A + G + E ++ LA LG+DNFR +V A +N D + Sbjct: 196 LSARVDLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAAVNNDRVEEMRE 255 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 + + + + +++ N P + P + Sbjct: 256 QF---GEAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADDGVQ--RHATTR 310 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 Y + H +LE+LS+AVV+N + + LA I +I+ Sbjct: 311 QYAYDRNVTQIKHSRGRLEKLSVAVVLNNAVSP-----AKGKPWSAEQLAHIEQILRNGL 365 Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 GI+++RGD + ++S+DF + + +G LL+ L Sbjct: 366 GIDAQRGDQLVVSSLDFPAPN----APEPWWRERETLEQGGWYV---AYAIGALLLYLLV 418 Query: 457 LHALRRLHNIDD 468 L R Sbjct: 419 ARPLLRTLQQWA 430 >gi|265985824|ref|ZP_06098559.1| flagellar M-ring protein FliF [Brucella sp. 83/13] gi|264664416|gb|EEZ34677.1| flagellar M-ring protein FliF [Brucella sp. 83/13] Length = 324 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 140/316 (44%), Positives = 201/316 (63%), Gaps = 2/316 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGCPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 CMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVAGH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESCVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVS 316 + ++A VEQN+P Sbjct: 308 RNDNATGVEQNIPQEQ 323 >gi|114800445|ref|YP_758973.1| flagellar MS-ring protein [Hyphomonas neptunium ATCC 15444] gi|114740619|gb|ABI78744.1| flagellar M-ring protein FliF [Hyphomonas neptunium ATCC 15444] Length = 528 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 129/555 (23%), Positives = 222/555 (40%), Gaps = 40/555 (7%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 +F + +L +R L+LA+ + I LY LE + I L Sbjct: 2 KFLDTLKALPVSRQLMLAAAVAGMIAAMSFLVQGATRDPMTLLYSGLEPAHAGDIIKELE 61 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ++ + I G +I VP R LA QGLP S GYEL D+VN F +TS M Sbjct: 62 QSGTPYEIK--GEAIFVPQGKRDAIRFTLAQQGLPRPSVQ-GYELLDEVNGFSVTSEMYN 118 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188 RA EGE+ RTI +I G+ +ARVHI F + TASV + A Sbjct: 119 AAYWRAKEGELTRTILAIPGVSSARVHIGANLRSGFSRSQPNQTASVTLTTARDMTAGQA 178 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 EAI+++VA AV L DV V+D +L + R + QA +E I Sbjct: 179 EAIQYMVALAVAGLRAEDVAVIDPVKGILAGPKANRTEEPAVAAATQA--SLLEQKILSL 236 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +GV N R + +++ Q + +DP+S+V R+ + + ++ +TV Sbjct: 237 LEPRVGVGNARVSATVDVSRQRQVTSAVTFDPNSRVIRN--RTTNDSTGASAGAGGGMTV 294 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 N+P + + +N+ E +YEIN +++R++IAV++N+ L Sbjct: 295 ASNLPQGGEGGGGNTSTNKNST---ETVSYEINETRTEVETLPGEVQRITIAVLLNEQAL 351 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + A+ +++++A GI++ RGDTI+I M F + + V Sbjct: 352 GIDPAAADVATLTQQMAADFEQLIASAAGIDTARGDTISIELMPFQAVPVDDLIEVPGMV 411 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 ++ R+F + + AL+ + +++ + + Sbjct: 412 EQLMERYFWSGLQALLLGLVVIVLGVGVVRPML--------------------------- 444 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 D ++ + + + V L +E A +L++ Sbjct: 445 ---VQKSKDALSPEDLGAGAGAEGAGRAVASGADVESDPFAYLKDYATDRQEETAALLQQ 501 Query: 549 WARSEIEDRYTQHIS 563 W + + T I+ Sbjct: 502 WLTEDQQSGQTDQIA 516 >gi|269796398|ref|YP_003315853.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Sanguibacter keddieii DSM 10542] gi|269098583|gb|ACZ23019.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Sanguibacter keddieii DSM 10542] Length = 530 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 106/553 (19%), Positives = 220/553 (39%), Gaps = 32/553 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I L + S + + + V ++ +A + + P + LY L +D + Sbjct: 4 QITSALGRVTSSIREFTVAQRTLALIGLAVAVVGVVALSMWFSRPQFSPLYTDLAPADAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+ + +++++ GS++ VP+ V R+ +AA G+ S S++ GY L D Sbjct: 64 AIVDQLTAQGVKYQLTNGGSTVLVPTESVYDMRLKVAASGM-SPSADGGYSLLD-DMGMT 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 + F Q++T RALEGE+ +T+ S+ G+ A V + MP F PTASV ++ + Sbjct: 122 SSEFQQDVTYKRALEGEMGKTVSSMQGVELATVKLAMPAESVFVDQATDPTASVFVKTRS 181 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239 ++I +LV+A+V + DV V+DS+G +L+A G + + Sbjct: 182 GVTLTDDQVQSIVNLVSASVEGMKATDVAVIDSSGAVLSAVGTGLAGSGGNKQ-TVEYEQ 240 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + +I L +GV V A+L+ D + + + V + + + Sbjct: 241 RVAQSIQAMLEPIVGVGKAVVTVTADLDYDATERTQESFSSAEGVLPLTERTTTEEFAGG 300 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 P + V N+ +VP + + + ++N ++ + T + R S+ Sbjct: 301 GNPATGVLGPDNI------QVPNGTADGSYTNETSEANNAVDKLTEHTVTAPGTVRRQSV 354 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 A +A++ +VS+A+G + RGD +T++ M F + Sbjct: 355 A------------VAVDAAAAAAVDMAQLQAMVSSASGFDEARGDVVTVSQMPFDTSAAE 402 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 ++ + + + ++ + + G L+ + L + E Sbjct: 403 SAQAALDAAAEAEAAAASSRMMQTYVIAGAALLALVLLAIFLARRGRNREDPRESLDLGD 462 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 L A+ + + L + + +++ + N + +++ Sbjct: 463 LPIMDEPLALEPADLDTQLLELPEVPELPSAEQVSIERKRND---------VALLVDEQP 513 Query: 540 ERFAKILRKWARS 552 E+ A++LR W Sbjct: 514 EQVAELLRGWMDE 526 >gi|325567531|ref|ZP_08144198.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC 12755] gi|325158964|gb|EGC71110.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC 12755] Length = 541 Score = 257 bits (655), Expect = 5e-66, Method: Composition-based stats. Identities = 115/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + Q + +I+ ++ + + A + Y L+ L +D Sbjct: 2 MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 61 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118 IS L E I ++++DNG++I + V + RI+LA LP++S +G+ELFD N Sbjct: 62 AGTISKDLDEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 T ++I RA+ GE+ R I+SI + +A+V +VMP+ F + PTAS+++ Sbjct: 120 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLS 178 Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 +S + I L + AV L +V V+DS G LT E E + K ++I Sbjct: 179 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 238 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 + + +E + K L G D F+ ++ +LN D+ + +++ YD +++ + Sbjct: 239 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 298 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + +Q + N+ E + E++T++ T Sbjct: 299 QGTVQEAQTGTVDDNVSNV---------TGTDGEGNNSYSRSVENELDTETTTTITAPGM 349 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 +ER++ ++V+N + AE+ +++++A G ++ RGD I I DF Sbjct: 350 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 396 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + ++ + Q + ++ + ++ LV + + +RR D+ + Sbjct: 397 AQAEVDPAADPQGNEQIAAAKGYVKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDV 456 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK-----QSD 528 + P +S + + + + N+ + ++ ++ D Sbjct: 457 TDEMVTFAQPSAASIGASNPVAQEVVFGGVGNRSAETKPAVPEASTQEATAEHTGEPTLD 516 Query: 529 LRLLHMIEINEERFAKILRKWARS 552 + E N E A++++ W + Sbjct: 517 QTARNYAESNPEVAAELIKAWMKE 540 >gi|297584035|ref|YP_003699815.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10] gi|297142492|gb|ADH99249.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10] Length = 528 Score = 256 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 87/564 (15%), Positives = 194/564 (34%), Gaps = 70/564 (12%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + S + + +L +++ I +A + + + LY L + + I L Sbjct: 14 EFWQSRSKKQRGLLIGAVVLIIAFIIALSWVGSRTNLVPLYSNLTIQETGEIKANLDGRG 73 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 I +S +G+SI VP + V ++ LAA+G+P + Y F FG T ++ Sbjct: 74 IQNEVSADGTSILVPETAVDNLKVELAAEGIPQTG-RIDYGTFGDNMGFGTTDSEFQLLE 132 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSVYKSA 188 AL+ + I+++ G+ A+V I +P+ + + + ++ +A Sbjct: 133 RAALQTTLEDLIRNVDGVTNAQVMITLPEESVWLQETPSEATASILLNMQAGYSLDESQI 192 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEIE 242 ++ HL + +VPNL + ++ ++D + L + +I + I+ +++ Sbjct: 193 RSLYHLASRSVPNLPVENIVIMDQFSRYLELEDQPGMADSSLSVYEQHRAIQRDIERDLQ 252 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRS 297 ++ + L +G D ++ +L+ + E + +P + S+ + Sbjct: 253 RDLQQMLGTMMGPDKVLVSISTDLDFTEENRTEDLVEPVDEENMEGIAISVERITETFSG 312 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 E ++ + + EE+ N ++N T Y+L + Sbjct: 313 EDIADGGVPGAGEDDIPNFPGVGA-GAGAGDYELIEERINNDVNRIHREITESPYQLRDI 371 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-------NSRRGDTITITS 410 SI V+V S Q +D A + +IV + D + ++ Sbjct: 372 SIQVMVEPP--DPEDIGSLPQQTLDDIQAMLTQIVRTTIPDEVTAEWGDEELADRVLVSP 429 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +F F + + ++G +++ + L R Sbjct: 430 QEFFGRVEFEEPQTGIPWW---------YFLVGALVLGAVILAVVLLRRGR--------- 471 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 VT D+ L ++ + + Sbjct: 472 ---------------EEEVTEVASAEDDFRLPPIDKKPQTEEGA------------RKQQ 504 Query: 531 LLHMIEINEERFAKILRKWARSEI 554 L + + + F+K++R W E Sbjct: 505 LEDLAKDKPDEFSKLIRTWLSDEN 528 >gi|149182503|ref|ZP_01860976.1| flagellar M-ring protein [Bacillus sp. SG-1] gi|148849763|gb|EDL63940.1| flagellar M-ring protein [Bacillus sp. SG-1] Length = 529 Score = 256 bits (653), Expect = 8e-66, Method: Composition-based stats. Identities = 100/564 (17%), Positives = 192/564 (34%), Gaps = 63/564 (11%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 Q ++ + + + LV I+ F + LY L S+ I L Sbjct: 11 EQLNTFWSARTKKQKGMYGVAALVIILAIAVTGFLSTRTNLVPLYSNLAPSETGSIKENL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I I+D GS+I VPS MV ++ LAA+G+P+S S Y F + FG+T Sbjct: 71 DGRGIVSEITDGGSTIMVPSEMVDTLKVELAAEGIPNSGS-IDYSFFSQNAGFGMTDNEF 129 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIRAINPSV 184 + ++ A++ E+A ++ I G+ A V I +P+ G F A + + + Sbjct: 130 NVMKLDAMQTELANLMKGIEGVQDANVMITLPEKGVFISDAVEQASASIVLNTKPGFNFD 189 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEI 241 K +++ HLV+ +VP+L ++ +++ + + G + + I ++ +I Sbjct: 190 QKQIKSLYHLVSKSVPDLPTDNIVIMNQLFEYFEMENENSSFGGTVVQQMDIKDRVEKDI 249 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQR 296 + + L +G + +V +++ + P + S++ + Sbjct: 250 QKQVQSMLGTLIGFNKVVVSVTTDIDFTQENREVNEVTPVDAENMEGIAVSVQRITETFT 309 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 E + V S + ++ EE N E+N YK+ Sbjct: 310 GNGQTAGGVPAAE-DAGDGLGTYVEGENSNGDYERMEETINNEVNRIRREIVESPYKIRD 368 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRRGDTITIT 409 + I V+V S Q + + ++ I+ + D I ++ Sbjct: 369 IGIQVMVEPP--DPEDPNSFPQDRQEDISQILSTIIRTSIDKEAGTELTPEAIEDKIVVS 426 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 F F T +V + ++ L +RR + + Sbjct: 427 VQPFNGKMEFEQETPSALPWWT----------YVVGGILLAVIILLIFLMVRRNKTVVEE 476 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + ++ P I + T S Sbjct: 477 EVVYEERQQPVNIPDIDTEKET-------------------------------ESSVRRK 505 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 +L M E FAK+LR W E Sbjct: 506 QLEKMAREKPEEFAKLLRSWLADE 529 >gi|330899425|gb|EGH30844.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 319 Score = 256 bits (653), Expect = 9e-66, Method: Composition-based stats. Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 4/295 (1%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 85 AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186 R LEGE+ARTI +++ + ARVH+ +P F + +P+ASV++ Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244 AI +LVA +VP L +TV+D G LL+ + GK + ++ + Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQR 264 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299 + L LG D +++ V A ++ + ++PD RS + + + S + Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSS 319 >gi|319649567|ref|ZP_08003723.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2] gi|317398729|gb|EFV79411.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2] Length = 533 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 102/569 (17%), Positives = 197/569 (34%), Gaps = 66/569 (11%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + + +S + + ++ + I+L AA F LY L S+ I + Sbjct: 9 IGKVKEYWSSRTKKQKTVMIGAAAICILLIAAAAFLSTRTTLVPLYSNLTPSETGTIKES 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + I+D G++I VP V ++ LAA+G+P S S Y F + G+T Sbjct: 69 LDTRGVVSEIADGGTTIKVPEEAVDSLKVELAAEGIPKSGS-IDYSFFSQNAGIGMTENE 127 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRAINPS 183 + ++ A++ E+A ++ I G+ A+V I +P+ G F A + + + Sbjct: 128 FNVLKLEAMQTELANLMKGIDGVNDAKVMINLPEKGIFVNDSSEEASASIVLNTKPGYQF 187 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQH 239 +A+ HL A ++PNL ++ + + + + + I + I+ Sbjct: 188 EESQIQALYHLAAKSIPNLPTDNIVITNQFFEYFDLKNKQNSSSESTFAAQHEIKKEIER 247 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDA 294 +++ + L +G D +V A+++ + E + P + S + + Sbjct: 248 DVQRQVQNMLGTLMGQDKVVVSVTADIDFTQENREENLVTPVDEENMEGIAISAQKITET 307 Query: 295 QRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + N P +D V S + ++ EE N E+N YK Sbjct: 308 FTGNGEGAGGTPALGGNDEPAGTDSYVATGDSSGDYERIEETINNEVNKIRREIVESPYK 367 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG---------INSRRGD 404 + L I V+V + S Q +I+ + +V + D Sbjct: 368 VRDLGIQVMVEPPTADDP--ASLPQERINDITQILGTVVRTTINKDAAADAELTDEAIQD 425 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I ++ F F + T I + V L++ L ++ Sbjct: 426 KIVVSVQPFNGKVEFTNETSTRIPWWI----------YAIGGVLLLIIVLLIFLFVKARK 475 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 ++ EV + P ++ T S Sbjct: 476 RQKQEEEMEVQTAETFNLPDVNEEHET-------------------------------ES 504 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 505 TVRRKQLEKMAKEKPEDFAKLLRTWIAED 533 >gi|153953778|ref|YP_001394543.1| flagellar MS-ring protein [Clostridium kluyveri DSM 555] gi|219854394|ref|YP_002471516.1| hypothetical protein CKR_1051 [Clostridium kluyveri NBRC 12016] gi|146346659|gb|EDK33195.1| FliF [Clostridium kluyveri DSM 555] gi|219568118|dbj|BAH06102.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 527 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 107/568 (18%), Positives = 209/568 (36%), Gaps = 59/568 (10%) Query: 4 LDQLLQFFKSG----TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 + +L Q FK+ L + + + + I + A + Y L+ ++ D Sbjct: 1 MGKLSQIFKNLIDKFKKLSKNKKIAFGVITAGIIAAIVFAAISLGKTKYAVLFSNMDSKD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++ + L E +D ++ G+SI VP V R+ + ++ + ++ + G+EL D+ + Sbjct: 61 LSSVYKQLQEDKVDVKV--EGNSILVPEGEVDATRMKVLSE-VEITNGSEGFELLDQ-SK 116 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T +I RAL+GE+ RTI+S+ + ARVH+V+PD F K + +ASV ++ Sbjct: 117 LGSTDTEIKINYQRALQGELERTIKSLPEVENARVHLVLPDDTEFVKDTSPGSASVTLKL 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229 + +A+ LV+ AV N+ +V V+D LL+ + E K Sbjct: 177 KEGEELSKEQVKALVSLVSGAVKNVPKENVQVIDDNMTLLSKDLFEDEANSEDSTIPAEK 236 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + + + +E N+ L A G D + V A+L+ D Q YD +S V Sbjct: 237 QQQLKEQYEKNLEKNLLSMLEAVYGKDKVQVKVNADLDFDAVQQNSTTYDNNSVVVSEHT 296 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 +++ Q T+Q + + + + N+ E NY + T Sbjct: 297 INETNQGDTTNQTG------SPVDNNMSNTITNNTTGGNSTYNETTRNYNVPKVEQKTVK 350 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++RL+ +V ++ D+ I + +A G + RGDTI++ Sbjct: 351 APGSVKRLTASVALDGDV-------------DDATTTAIRNLAVSAIGYDGNRGDTISVE 397 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + F N+ + I A Sbjct: 398 GLPFDTTAKDNAQKDMEDMEQAEQAAKRN-------------------RLFAVIGGIAAA 438 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD- 528 + G I + + I + ++D + + + + Sbjct: 439 IIATIIGVIIWRRRHAEDELLEDELRPGGIDVVIGDEDTKASEKIKFKPLELEQDTEDVH 498 Query: 529 --LRLLHMIEINEERFAKILRKWARSEI 554 + + ++ A I++ W + Sbjct: 499 IEREIKKYAKDKPDQVADIIKSWLAEDE 526 >gi|157692300|ref|YP_001486762.1| flagellar MS-ring protein [Bacillus pumilus SAFR-032] gi|157681058|gb|ABV62202.1| flagellar basal-body M-ring protein [Bacillus pumilus SAFR-032] Length = 530 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 94/563 (16%), Positives = 211/563 (37%), Gaps = 48/563 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + ++F+++ + L + +++ + ++ F +S L+ L S+ Sbjct: 6 MQLRTKTVEFWRNRSKL---QKILMIGGVAALAIIITVVSIFASSEKMVPLFKDLSESEA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L I +++NG++I VP ++ LA+QGLP + Y F + F Sbjct: 63 GQIKQELDGKKIKSELANNGTTILVPEKQADSLKVTLASQGLPKTG-KIDYSFFANNSGF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179 GLT ++ +V A + E++ I +I GI ++V I +P F + + +AS++++ Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 181 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234 + + + HL++ +VPNL ++ ++D ++++ + + Sbjct: 182 ERGYTLSPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRL 290 + I+ ++ I + L +G + +V +++ ++ +E + +P + + Sbjct: 242 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 301 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + + + N +K E++ NYE+N Sbjct: 302 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGNYEKSEDRINYEVNRIHKDIKES 361 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 YK+ + I +V +V S + D ++ I+S + G +T Sbjct: 362 PYKIRDVGIQALVEPPTANDVN--SLTAERQDDIKKILSTIISTSIDKEYTNGQALTQAD 419 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 L+N++ S + + + + I V++VG + Sbjct: 420 ---LDNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVGGV-------------------L 457 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + IL ++ L + D + + + Sbjct: 458 LLAIIALIILLVRRRRKEEEEEFEFDERTPLHVPDIDTEPETEEM----------VRKNQ 507 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L M + E FAK+LR W + Sbjct: 508 LEKMAKDKPEDFAKLLRSWLSED 530 >gi|261313942|ref|ZP_05953139.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] gi|261302968|gb|EEY06465.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 335 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 2/328 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + ++A VEQN+P + S E Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEK 335 >gi|254706488|ref|ZP_05168316.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 330 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 2/328 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 4 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240 +SA++IR LVAAAVP+LD VTVLD+ G LL + N + S+ Q + Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + ++A VEQN+P + S E Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEK 330 >gi|308173583|ref|YP_003920288.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM 7] gi|307606447|emb|CBI42818.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM 7] Length = 536 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 95/574 (16%), Positives = 197/574 (34%), Gaps = 63/574 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ + + +T+ +++ S + I+L + F +S LY L + Sbjct: 4 TLMQMKTKTSAFWNNRSKTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I L + ++D G+ I VP S V ++ LAA+GLP + S Y F K FG Sbjct: 64 QIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI--R 178 LT ++ +V A + E++ I + GI +++V I MP F + +AS+++ + Sbjct: 123 LTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQIK 182 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIV 234 + HLV+ +VPNL ++ ++D ++ + I Sbjct: 183 PGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGIK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 ++ +I+ ++ L +G D +V A+++ ++ E + +P + S Sbjct: 243 SQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISAE 302 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + + N + + + +K + NYE+N Sbjct: 303 KVAETYKGDGAANGGTAGTGSN-DTANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIAE 361 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----------IN 399 YK+ L I V+V ++ + + + +I V + N Sbjct: 362 SPYKVRDLGIQVMVEPP---NPKNAASLTAQRQADIQKILGTVVRTSLDKNEAQNQKLTN 418 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + + I ++ F N+ + S + I V Sbjct: 419 NDINNKIVVSVQPFDGKVSTNTASANSSGLPIWVYITGGV-------------------- 458 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 + + I ++ + ++ Sbjct: 459 ----------------LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEQ 502 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N +L M + E FAK+LR W + Sbjct: 503 NETEETVRRKQLEKMAKEKPEDFAKLLRSWLDED 536 >gi|256370955|ref|YP_003108779.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM 10331] gi|256007539|gb|ACU53106.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM 10331] Length = 513 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 105/554 (18%), Positives = 206/554 (37%), Gaps = 54/554 (9%) Query: 2 AILDQLLQFFKSG-TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +L + + + + ++ I + + + +A +SP Y L+ L D Sbjct: 5 DLLAKARDSLRRFASGFTTGQKAVVMVGIALVVAIAVALASLTSSPSYGVLFSGLSAQDA 64 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I+ L A + + +++ G+++ VP ++V + R+ LA GLPS +G + ++ Sbjct: 65 GSITAKLQSAGVPYELTNGGTTVLVPQNLVDQERVSLAEAGLPSQ--TAGLTSLNGLS-I 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMI 177 + Q+ AL+ ++A+TI++I+G+ +A+V++ +P +F + + V + Sbjct: 122 TSSQITQQADYQAALQSQLAQTIEAINGVQSAQVNLALPPTDAFAIGQSSQPSASVIVTL 181 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237 A + EAI HLVA+A+P ++ DVTV D G +L A + N G S Q Sbjct: 182 DAGVSLTSQQVEAIVHLVASAIPGMNANDVTVADQNGDVLAAPGLGVNAQGAGQS-AQGF 240 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 ++E +I L +G N V A L+ + + + Q Sbjct: 241 DSQLEASIQSMLDTIVGPGNANVRVAATLSTNQVTTKTQSIQTQKGKPLTTPTQTQTQTQ 300 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + + + + + Y I + ++RL Sbjct: 301 TFTGNGTVPGGTL----GTTGIATTGNQVSTYKQTSSTTQYAIGQVTQTVQQAPGAIQRL 356 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AV VN LA++ ++V+AA GI RGDT+++ ++ F Sbjct: 357 SVAVAVNSHVKGL-------------SLAKLRQVVAAAAGIVPARGDTLSVVAVPF---- 399 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 T L + ++ ++G L L Sbjct: 400 -PALATTPSGAGSSLFGSILGIAKVVLLVLGALGAILLMSR-----------------AA 441 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + P+ A + L +++ + + + +L I+ Sbjct: 442 ARTEVEPLFPAELEPALAGTGGQLAGPTEELPAVALPQSQPVVGED-------VLDYIDR 494 Query: 538 NEERFAKILRKWAR 551 E AK+LR W Sbjct: 495 QPEDVAKLLRVWMT 508 >gi|154686037|ref|YP_001421198.1| flagellar MS-ring protein [Bacillus amyloliquefaciens FZB42] gi|154351888|gb|ABS73967.1| FliF [Bacillus amyloliquefaciens FZB42] Length = 536 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 93/574 (16%), Positives = 194/574 (33%), Gaps = 63/574 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ + + +T+ +++ S + I+L + F +S LY L + Sbjct: 4 TLMQMKTKTAAFWNNRSKTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I L + ++D G+ I VP S V ++ LAA+GLP + S Y F + FG Sbjct: 64 KIKEELDTKKVSSELADGGTVIKVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGQNAGFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---R 178 LT ++ +V A + E++ I + GI +++V I MP F ++ ++ + Sbjct: 123 LTDNEFDVLKVEATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPAASASIVLQMK 182 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIV 234 + HLV+ +VPNL ++ ++D ++ + I Sbjct: 183 PGYSLDQNQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGIK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 ++ +I+ ++ L +G D +V A+++ ++ E +P + S Sbjct: 243 SQVEKDIQKHVQSLLGTMMGQDKVVVSVTADVDFTKEKRTEDTVEPVDKDNMEGIAVSAE 302 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + + N + + + + +K + NYE+N Sbjct: 303 KVAETYKGDGAANGGTAGTGSN-DTANYAETNGGSNSGDYEKSSNKINYEVNRIHKEIAE 361 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGIN 399 YK+ L I V+V ++ + + + +I V + Sbjct: 362 SPYKVRDLGIQVMVEPP---NPKNAASLSAQRQADIQKILGTVVRTSLDKNETQNQNLTD 418 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + + I ++ F N+ + Q S + I V Sbjct: 419 NDINNKIVVSVQPFDGKTSLNTDSAQSSGLPIWVYITGGV-------------------- 458 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 + + P + + L N++ Sbjct: 459 -----LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEKIETEE------ 507 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + E FAK+LR W + Sbjct: 508 -----TVRRKQLEKMAKEKPEDFAKLLRSWLDED 536 >gi|328553485|gb|AEB23977.1| flagellar MS-ring protein [Bacillus amyloliquefaciens TA208] Length = 531 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 97/575 (16%), Positives = 199/575 (34%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + F+ + +T+ +++ S + I+L + F +S LY L + Sbjct: 1 MQMKTKTSAFWNNR---SKTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + ++D G+ I VP S V ++ LAA+GLP + S Y F K F Sbjct: 58 GQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI-- 177 GLT ++ +V A + E++ I + GI +++V I MP F + +AS+++ Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQI 176 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + + HLV+ +VPNL ++ ++D ++ + I Sbjct: 177 KPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 236 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288 ++ +I+ ++ L +G D +V A+++ ++ E + +P + S Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISA 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + N + + + +K + NYE+N Sbjct: 297 EKVAETYKGDGAANGGTAGTGSN-DTANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIA 355 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----------I 398 YK+ L I V+V ++ + + + +I V + Sbjct: 356 ESPYKVRDLGIQVMVEPP---NPKNAASLTAQRQADIQKILGTVVRTSLDKNEAQNQKLT 412 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 N+ + I ++ F N+ + S + I V Sbjct: 413 NNDINNKIVVSVQPFDGKVSTNTASANSSGLPIWVYITGGV------------------- 453 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + + I ++ + ++ Sbjct: 454 -----------------LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEE 496 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N +L M + E FAK+LR W + Sbjct: 497 QNETEETVRRKQLEKMAKEKPEDFAKLLRSWLDED 531 >gi|326386946|ref|ZP_08208560.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM 19370] gi|326208626|gb|EGD59429.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM 19370] Length = 561 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 197/555 (35%), Gaps = 45/555 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 S R + + + + + LY L S+ +++ AL +A Sbjct: 32 LGQFASQAPVRRALPWFAGVAAVGMAGLLWLEMAPAPQRVLYTDLNDSERAQVTAALDKA 91 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I + I++ +++V + KAR+ AA G + ++ E G + ++ Sbjct: 92 AIRYTINNQTGAVTVGEDDLYKARMVAAADG--ALATPETGEQMIDKLPMGASRTVEGQR 149 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188 A E E+ TI I G+ A RVH+ P+ F + A TASVM++ Sbjct: 150 LQAARERELELTIMQIEGVEAVRVHLAEPEKSVFVRDNAPATASVMVKLAKGRQLSDSQV 209 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 AI +LVA +V L + V V+D G LL+ R + + ++ ++ + Sbjct: 210 TAIVNLVAGSVAGLSVDAVKVIDQQGHLLS---SGRPGDDDRIEMQARLEDKLRQQVETL 266 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L LG NF S + +L+MD Q YD V + + +Q + P V Sbjct: 267 LTPMLGTGNFSSEIQVDLDMDQQTSARESYDKQGVVRSETQTA--SQTTGNGAPVGVPGV 324 Query: 309 EQN-----------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 N P + P + NYE+ + T K+ RL Sbjct: 325 LSNTPPPQTQPSPGAPTANTTPASPPAPSPTSSDTSSTRNYELGREVAVTNASPGKVRRL 384 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AV ++ + + + +I ++VSAA G + RGD +T+ +F Sbjct: 385 SVAVALSGAAMAKAK---------PGEIDQIKQLVSAAVGADPTRGDQVTVVVRNFQPTT 435 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + ++ R+ ++ L+ L+ G+ L + D ++ Sbjct: 436 VEQPKFWETPWFAMMVRNGVALLAVLLTLLL-------GVRPLIKALRRDHRGAAKIESD 488 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + + ++ ++ + + ++ Sbjct: 489 ESEDSETAEAEDSEPE---------PDRPELIPAQNPDTGVVDPELLGRQVGLAQRLVRE 539 Query: 538 NEERFAKILRKWARS 552 E +LR+ + Sbjct: 540 RPETAVAVLRQMLKD 554 >gi|126653749|ref|ZP_01725667.1| flagellar M-ring protein [Bacillus sp. B14905] gi|126589713|gb|EAZ83849.1| flagellar M-ring protein [Bacillus sp. B14905] Length = 531 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 86/571 (15%), Positives = 195/571 (34%), Gaps = 67/571 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + QF+K S + + +++ ++ I L FF + Y LY L ++ + Sbjct: 8 IKNDTSQFWK---SRSKKQKIVMVGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL + ++I+ G+SI VP V + LA++G P + Y F + FG+ Sbjct: 65 VKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTG-TIDYS-FANSSGFGM 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRA 179 T + + A E EIA+ +++ G+ A+V I +P+ G F K A + + Sbjct: 123 TDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTDP 182 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIV 234 + + +LV+ ++PNL ++ + + + T + L + Sbjct: 183 GYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGTSTATAEGQLQMK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + ++ +++ + L +G D +V +++ + E + P + S + Sbjct: 243 KLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISAQ 302 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + + + ++ EE N ++N Sbjct: 303 RITEQYSGTGAAAATGTPEAETTTDNFTTYNEGTSGNGDYERTEETINNDVNRIRKDIQE 362 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRR 402 YK++ + I V+V T+ S G + ++ IV + + Sbjct: 363 APYKVQDIGIQVIVEPPTATDA--ASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + + ++ + + + + + L +L+ F + + +R Sbjct: 421 DEKVAVSVQPLYGKATQVADEKPMIPWWVW-------VIGGILLAVIVLLAFFIIRSRKR 473 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 ++ E ++ + Sbjct: 474 AQEEEELSILEEQEDLMIDDINEEIETEATM----------------------------- 504 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + + FAK+LR W + Sbjct: 505 ----RRKQLEKMAKDKPDDFAKLLRSWIAED 531 >gi|194014358|ref|ZP_03052975.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061] gi|194013384|gb|EDW22949.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061] Length = 525 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 90/563 (15%), Positives = 210/563 (37%), Gaps = 48/563 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + ++F+++ + L + +++ + ++ F +S L+ L ++ Sbjct: 1 MQLRTKTVEFWRNRSKL---QKILMIGGVAALAIIITVVSIFASSEKMVPLFRDLSEAEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L N+ +++NG++I VP ++ LA++GLP + N Y F + F Sbjct: 58 GQIKQELDGKNVKSELANNGTTILVPEKQADSLKVTLASEGLPKTG-NIDYSFFANNSGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179 GLT ++ +V A + E++ I +I GI ++V I +P F + + +AS++++ Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 176 Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234 + + + HL++ +VPNL ++ ++D ++++ + + Sbjct: 177 ERGYTLAPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 236 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRL 290 + I+ ++ I + L +G + +V +++ ++ +E + +P + + Sbjct: 237 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 296 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + + + + +K E++ NYE+N Sbjct: 297 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGDYEKSEDRINYEVNRIHKDIKES 356 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 YK+ + I +V +V S + D ++ I+S + G +T Sbjct: 357 PYKIRDVGIQALVEPPTANDVN--SLTAERQDDIKKILSTIISTSIDKEYTNGQALTQAD 414 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 +D + + + + +V V L + L + +R+ ++ + Sbjct: 415 LDNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVGGVLLLAIIALIILLVRKRRKEEEEE 474 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 I P + T + + Sbjct: 475 FEFDEHTPIHVPDIDTEPETEEM--------------------------------VRKNQ 502 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L M + E FAK+LR W + Sbjct: 503 LEKMAKDKPEDFAKLLRSWLSED 525 >gi|229918627|ref|YP_002887273.1| flagellar MS-ring protein [Exiguobacterium sp. AT1b] gi|229470056|gb|ACQ71828.1| flagellar M-ring protein FliF [Exiguobacterium sp. AT1b] Length = 523 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 101/572 (17%), Positives = 206/572 (36%), Gaps = 68/572 (11%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + ++ + ++ R L+ I V ++ + FF++ P+ LY L Sbjct: 1 MNEQLKERFKSMTDALKAMPAKRKLVWGISIAVILIAALVLTFFLSRPNMAPLYTNLSAQ 60 Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + ++ L+ + I + NG S+ VP+ MV + ++ LAA G+P S S Y F + Sbjct: 61 EAGEVTEKLTADGVQSEIKATSNGVSVYVPTEMVDQLKVSLAAAGIPKSGS-IDYSFFSE 119 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASV 175 FG T + A++ E+ R I I GI A+V I +P+ F + PTAS+ Sbjct: 120 NAGFGTTDREMAVIERSAMQTELERLITQIEGINQAKVIISLPEKSVFLAEDQGEPTASI 179 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKSL 231 ++ + + + HL++ +VPNL +++++D L + L Sbjct: 180 VLNIGAGTNLEPNTVKGLYHLISKSVPNLKPENISIMDQYFTYYDLDQTVVAGGSSSDPL 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 ++ + ++ ++ I + L+ LG + +V A+++ + + P + ++ Sbjct: 240 ALKRQVEKDVRQQIQQMLSVLLGERSVLVSVTADIDTTQTAEEQNLVTPVDEENMEGIVT 299 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDR---KVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + +E + E +D E ++K E NYE+N + Sbjct: 300 SAERIAEAYTGGTGTATEATGTGENDTINFPAATGEGTEESEKNHEIINYEVNRITKQIQ 359 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV-------SAATGINSR 401 + Y + L + ++ + G ++ +++ L + + + ++ Sbjct: 360 NAPYTIRDLGVQLI-----VEPPDGATSIDPQLEGDLETMMYSIIRTSLAKTDEAITDAE 414 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 + + S F E + + + + A V+ A L A+R Sbjct: 415 LEQKVVVVSRPFAEVEEVAATEQPTPWWMYAAAAGAVVLLA------------LIFFAMR 462 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 R + E P + Sbjct: 463 RRKQEVVEETNEWEVPYEDEVPDLDLEERGEG---------------------------- 494 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L + E N E FAK+LR W E Sbjct: 495 ---AVKKKQLEKLAESNPEEFAKLLRTWMSEE 523 >gi|328958284|ref|YP_004375670.1| flagellar M-ring protein [Carnobacterium sp. 17-4] gi|328674608|gb|AEB30654.1| flagellar M-ring protein [Carnobacterium sp. 17-4] Length = 524 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 227/565 (40%), Gaps = 53/565 (9%) Query: 1 MAILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + ++ +LG+++ + L V++ + + + ++ Y L+ LE +D Sbjct: 1 MDGMKKIWTGIKDGWKNLGKSKQIGLVFVLIFVVSIVTSLTYYTQKVEYATLFSDLEEAD 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVN 118 I + I +++ D+G++I + + V RI LA LP S +G+E+FD+ + Sbjct: 61 AGTIVNDIKTKGIKYKLEDDGTTILIDQAQVDTYRIELAVNDMLPKS--TTGFEIFDETS 118 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVM 176 T ++I RA+ GE+ R+I ++ I A+V + +P+ F + ++ +AS++ Sbjct: 119 MM-ATDEDRKIMYQRAVTGELERSISALDSIEQAKVMLSLPEDSVFTSEENQSQASASIV 177 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILG 228 + + + + I LV+ AV NL ++ ++D+ G LL+ + +++ Sbjct: 178 LTPISGSQIPMSAVQGIASLVSGAVDNLPKENIKIVDTAGNLLSTALEDEGNLNATDLVS 237 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 K +I ++ + E+E + + L G+D AV A++N D+ + + + RS Sbjct: 238 KYQAITKSYEQELEQKLLQTLGPIYGMDKMTVAVNAKMNFDSNE--SEIINYGDSSVRSE 295 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +S + VE+ + +NYE+N+++ T Sbjct: 296 AVS---------AGGGTIDVEEGEGFENSINQIQSGEEGGNSTYNRTTNYELNSETTNTI 346 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++E+LS +V+ + + + IV+ G R DTI+I Sbjct: 347 KAPGEVEKLSASVIFDGN-------------LNPADQESLEAIVATTIGSVEER-DTISI 392 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 +DF T + LV + L++ + L LR+ ++ DD Sbjct: 393 QGIDFATTTDATDTTAPEQLKSSIRDTLVRYWPYLVGGLAILVILIVLLRLLRKRNDDDD 452 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + P+ T + +L+ ++N + + Sbjct: 453 ELDFFDEEEPEPIIEPVRPVRPTDE------------ERKAKEQADLKRQLN-KNMSEKE 499 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 + + + E A +++ W + E Sbjct: 500 STVRDYAKESPEGAADLIKIWMKDE 524 >gi|150020374|ref|YP_001305728.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429] gi|149792895|gb|ABR30343.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429] Length = 489 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 96/518 (18%), Positives = 192/518 (37%), Gaps = 39/518 (7%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQG 101 +N+P Y L +D I L + I +++ G+ I +PSS V + R+ LA+ G Sbjct: 1 MNAPRYVLLITANNETDAGAIVQQLESSGIPYKVEA-GNRILIPSSYNVYEVRMKLASSG 59 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 + +S+ G+E+ D+ + FG TSF +++ RAL+GE+ RTI +I+G+ ARVH+ +P Sbjct: 60 I-LGASSKGFEILDQTS-FGATSFDKQVNYQRALQGELERTIATINGVKYARVHLTLPKY 117 Query: 162 GSFRKI---GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 + + R + +++ + + I +L+ AV L +V V+D+ G+ L+ Sbjct: 118 TYYVRGDMAETRASVQLVLEPGASLSKEQVKGIIYLLTGAVEGLKPENVKVVDNFGRALS 177 Query: 219 A---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 + + ++ I AL A G+ LN + Sbjct: 178 DLVNFDENTYAASTKAELKMQLERYYRSKIQPALEAVFGLGKVEVITDINLNWQKTEKTI 237 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 Y + ++ + + V E N+P + + S +KK E Sbjct: 238 TTYSSPKGGFIRSKETESEKSTTFPSDGGPVGTESNIPTTYYQSLESSNSTL-YEKKHEI 296 Query: 336 SNYEINTKSIATTHDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 +NYE+N + ++E +S++V+++ EINK+V+ Sbjct: 297 TNYELNQIVENIVQNTEGEIENISVSVIIDSSSTV----------FNKVSKNEINKMVAD 346 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 + + + S Q + + +I + L+ ++ F Sbjct: 347 VIQKSIAANASPSNISYSLAFIPFSRELEEQYQKLIQSEQTKKDIIFKISLLLIATVLMF 406 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 + + A+K + +L G + I ++ Sbjct: 407 FSSYGILLQIRKSKARKLVLQRYKMLEEEARKLVEKEGQEEAEEILSEAQK--------- 457 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 V ++ + + E A I++ W Sbjct: 458 --------VIEELKNYAQQLAVKSPEETAAIIKIWLSE 487 >gi|296330835|ref|ZP_06873310.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674353|ref|YP_003866025.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296151840|gb|EFG92714.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412597|gb|ADM37716.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 531 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 93/575 (16%), Positives = 204/575 (35%), Gaps = 66/575 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F +S LY L + Sbjct: 1 MQMKNKTSEFWKNRSKL---QKILMISALAAIIIIGIIISVFASSSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177 GLT ++ +V+A + E++ I + GI ++V I +P F ++ + I Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233 + + HLV+ +VPNL ++ ++D ++ + + I Sbjct: 177 QPGYTLEQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288 ++ +I+ ++ L +G D +V A+++ + E + +P + S Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + + + + N +K + NYE+N Sbjct: 297 EKVSETYQGDGAANGGTAGT-GDEDVTNYEADGENTESGNYEKSSNKINYEVNRIHKEIA 355 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398 YK+ L I V+V + ++ + + +I V Sbjct: 356 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDATQNQNLS 412 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + + I ++ F ++ T + S + + + V+ A + ++ +LV Sbjct: 413 DEDINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLV------ 466 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 ++ + + ++ Sbjct: 467 ------------------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEE 496 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N +L M + E FAK+LR W + Sbjct: 497 ENETAETVRRKQLEKMAKDKPEDFAKLLRSWLAED 531 >gi|172057888|ref|YP_001814348.1| flagellar MS-ring protein [Exiguobacterium sibiricum 255-15] gi|171990409|gb|ACB61331.1| flagellar M-ring protein FliF [Exiguobacterium sibiricum 255-15] Length = 522 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 94/568 (16%), Positives = 190/568 (33%), Gaps = 61/568 (10%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + + + + + +IL I + A +++ P LY KL Sbjct: 1 MNEGLKTRFGALKTTWQEWSLVKKATIIGIILFLIAAIIVAAIWLSKPTMTPLYSKLSPQ 60 Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + +++ L+E + + +G +I VP ++ LA G+P S Y F + Sbjct: 61 EAGQVTEKLNEDGVKSEVVSGTDGVTILVPEESAENLKVELATAGIPKSG-QIDYSFFSE 119 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA-SV 175 FG T I ++ E+ I ++GI AA+V I +P+ F + SV Sbjct: 120 NAGFGTTDKEMNILERDTMQTELENLITQVNGIDAAKVMITLPEKSVFLSDKEETSTVSV 179 Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LS 232 ++ + S + + HL+A ++PNL ++T++D + + G + Sbjct: 180 VLTSSAGSDLNQQTVQGLYHLIAKSIPNLKEENITIMDQYFTYYEPGKGAQTAGGTDPMQ 239 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERSIR 289 + + + ++ I + L+ LG +V A++++ +Q + DPD Sbjct: 240 LKKTTEKDLRQQIQQMLSVVLGPQKALVSVTADVDVTQRQEEQKLVEPVDPDKIEGIVTS 299 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 K A+ + E +N + + + ++K + NYE+N + T Sbjct: 300 AEKVAEAYTGAANEGTAGTGENETINFPQ--GTGTTGDTSEKTHDIINYEVNRITKQITG 357 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSRRGDT 405 Y++ L I V+V + + + K + T ++ + Sbjct: 358 APYEIRDLGIQVIVEPPKGQNQIDPQLQTDLQTMMYSIIRTSLTKTDAKTTLTDAELANK 417 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 + + S F E T L+V +RR Sbjct: 418 VVVMSRPFAETPKQTVTTETTPMWVWF-----------ALGAAALVVIGAIFLLMRRRKT 466 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + + E P + ++ Sbjct: 467 AEIEELEEWTPIETEVPELSTE--------------------------------DTSDGA 494 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 +L + N + FAK+LR W + Sbjct: 495 VKRKQLEKLAASNPDEFAKLLRTWLAED 522 >gi|311030130|ref|ZP_07708220.1| flagellar MS-ring protein [Bacillus sp. m3-13] Length = 529 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 98/574 (17%), Positives = 198/574 (34%), Gaps = 69/574 (12%) Query: 3 ILDQLLQF----FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + ++L + F TS + + + S ++V I A +F+N LY L V Sbjct: 1 MKERLQEIKTKTFSFWTSRTKAQKTAMLSTVIVSIFAIAAMVYFLNKTDMAPLYKDLTVQ 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + +I L I +I++NG++I VP V ++ LAA+GLP S S Y F + + Sbjct: 61 ETGQIKEVLDGRGIQSQITNNGTAILVPQQSVDSLKVELAAEGLPKSGS-IDYGFFGERS 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMI 177 FG+T I ++ A++ E+A ++SI G+ A+V + +P+ G F + +AS++I Sbjct: 120 GFGMTDNEFRIMKLDAMQTELANLVKSIEGVKEAQVMLSLPEEGVFVRESTQEASASIVI 179 Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSL 231 A+ HLV+ ++PNL ++ +++ + + L Sbjct: 180 ENDPGYQFDQNHVNALYHLVSKSIPNLATDNIVIMNQNFEYFDLNNNQSSGNTFNASTQL 239 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER----- 286 + + I+ +I+ + + L +G + +V +++ + E P Sbjct: 240 ELKKEIERDIQRQVQQMLGMMMGYNKVVVSVTTDIDFTQEAREENRVTPVDPENMEGIAV 299 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 S+ ++ + + + +K EE+ N E+N Sbjct: 300 SVERITESYTGSEDTAGGVPGTGE--ADIPAYVAGGGSGSGDYEKMEERINNEVNRIRSE 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN------- 399 YK+ L I V+V + S + I+ ++ IV N Sbjct: 358 IVESPYKVRDLGIQVMVEPPVADDP--LSMQENTINDIRQILSTIVRTTIDKNMLGEDPE 415 Query: 400 -SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + + I ++ +F T + Sbjct: 416 LANIDEKIVVSVQEFNGKVEMEESTESTIPTWVYI------------------------- 450 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 G + + + + + + ++ + Sbjct: 451 ---------------AAGILLAVILLLLFLLFKRSSKEEEEEIMVTEEETVPFQVPDINN 495 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 S +L M + + FAK+LR W Sbjct: 496 EKESESSARRKQLEKMAKEKPDEFAKLLRSWLSE 529 >gi|304321127|ref|YP_003854770.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503] gi|303300029|gb|ADM09628.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503] Length = 485 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 108/467 (23%), Positives = 191/467 (40%), Gaps = 8/467 (1%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95 +A F L+ L + I L E + + I +GS+I VP + R+ Sbjct: 14 LLAMVFMAGGRTDALLFSGLSPAASGDIIGKLDEMAVPYTI--DGSAIYVPEGERDRLRL 71 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 LA G+P + +GYE+ D +N F TS M + RA EGE+ RTI +I + AARVH Sbjct: 72 ELARLGMPPAGG-AGYEILDDLNGFSTTSDMFDAAYWRAKEGELTRTILAIPTVTAARVH 130 Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 + + +FR+ +ASV + A A++I++L A AVP L V V+D+ Sbjct: 131 LGVTRQSAFRRARLDKSASVTVEASGGLSKSQAQSIQYLTALAVPELRPESVAVIDTARG 190 Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275 ++ + I + + + L A +G N R +V +++ + +E Sbjct: 191 VIAGPGATGDESPMGDEI--DREDRLASRLTHLLEAHVGPGNARVSVAMDIDRQSIAQKE 248 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEE 334 V DPDS+ S +S+++ S + VT+ N+P + + +++E Sbjct: 249 RVIDPDSRQIVSRSISEESD--AESDADIPVTIASNLPDGDAAEDPEEAGTRLVKRRRDE 306 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 + Y + RLS+AV++N+ G + + + + +V+ Sbjct: 307 EVTYTGTEIERVIETAAGTVRRLSVAVLLNERYTVNEEGETVPAPRSPEEVEALETLVAN 366 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A GI RGD + I + F + ++ R +++ L+ + F Sbjct: 367 AAGIEDERGDRLAIRVLPFEGEEPQLVTAPGFVEAHVMPRAVDIAQFSVLALLVASIAFF 426 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + AL A+ E K + T P+D A+ Sbjct: 427 VLRPALSPKTPFAQAEIAEGEDKLENLDAAEVLTMLTEENPDDAAAI 473 >gi|289670544|ref|ZP_06491619.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 335 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 74/315 (23%), Positives = 141/315 (44%), Gaps = 6/315 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++ + + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312 Query: 301 QPESAVTVEQNMPHV 315 P+ N P Sbjct: 313 GPQGPPGATSNSPGQ 327 >gi|225375317|ref|ZP_03752538.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM 16841] gi|225212806|gb|EEG95160.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM 16841] Length = 536 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 86/566 (15%), Positives = 183/566 (32%), Gaps = 41/566 (7%) Query: 1 MAILDQLL----QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M + +Q+ + + + +L S++ V ++ V+ P L Sbjct: 1 MKMPEQVQKVLDRILEWWKKFNTKQKTLLISIVAVVLVALAILAAVVSKPKMVTLVTCAT 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 ++ ++ L NI + +S +G + V A I L +P+S + ++FD Sbjct: 61 TAESGQVKNILDSENISYELSADGLAFQVNEKDYANASIVLGTNDIPTSGTKLS-DVFD- 118 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASV 175 F T + LE A ++++S + AA V + +PD + G + + Sbjct: 119 -GGFSSTEADKTKKYKLYLEEYYAEKLETLSNVDAAAVTLDLPDEDGTILSKGEQAYVTA 177 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLS 232 ++ + A + +A V N D +V +LD++ +L + + + ++ LS Sbjct: 178 ILTLNGTMDDEQAAGLAKYLATNVGNDDTSNVLILDNSSNVLFSGQDDTSVTGNANNQLS 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLS 291 + +++++ + L DN + +N D + Y PD + + Sbjct: 238 LKTKAENQVKGQVKDVLVGSSLFDNVEVGLNLAMNFDQTTESTHEYYAPDGQTNGMVGSK 297 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + + + + N + + ++ E +NY+ N K TT Sbjct: 298 SEYESNAVGGAAATPGTDSNDDDTTYVMEDNDYT--SSSVSETNTNYQNNEKITTTTPAV 355 Query: 352 YKLERL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 + SI+ V + + A D E S + I+ Sbjct: 356 GTVNYDGSSISAVATNYVIYDEDTLRASGTLGDMTFDEYVVANSEPVKAEVDQDLYTLIS 415 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + + T+ + L ++ L+ LG R Sbjct: 416 NATGVPVSNITIIAYDQPMFQYSKGSTRTISDYLQIILAVLIFALLGYVVFRSTRK---- 471 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + S + S + I ++ + Sbjct: 472 ---------------------EKAVEPEPELSVESLLESTKESADTLQDIGFNEKSETRV 510 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 + +E N E A +LR W E E Sbjct: 511 LIEKFVEENPEAAASLLRNWLNEEWE 536 >gi|205373372|ref|ZP_03226176.1| flagellar MS-ring protein [Bacillus coahuilensis m4-4] Length = 504 Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 97/550 (17%), Positives = 200/550 (36%), Gaps = 67/550 (12%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + V+L+ I+L +A FF LY L ++ I +L I IS+ G++I Sbjct: 1 MGIVVLLTILLIVAVTFFSTRTALVPLYSNLSPAETGSIKESLDSKGITSEISEGGTTIL 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP+ MV ++ LA++GLP + S Y F + FG+T + ++ A++ E+A I+ Sbjct: 61 VPTEMVDTLKVQLASEGLPKTGS-IDYSFFSQNAGFGMTDNEFNVLKLDAMQTELALLIK 119 Query: 145 SISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPN 201 SI G+ A V I +P+ G F + +AS++++ + +LV+ +VPN Sbjct: 120 SIEGVQDASVMISLPEQGIFVNDQTQQASASIVLQTQPGYQFEQSQISGLYNLVSKSVPN 179 Query: 202 LDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 L ++ +++ + + + + + + + I+ +I+ + L +G + Sbjct: 180 LPTDNIVIMNQFFEYFELENVNNSSFAGNISSQMDVKKQIERDIQQQVQSMLGTLIGFNK 239 Query: 258 FRSAVVAELNMDTQQIREIVYDP------DSKVERSIRLSKDAQRSETSQPESAVTVEQN 311 +V +++ + E + P + + R+++ + E Sbjct: 240 VVVSVSTDIDFTQEAREENLVVPVDEENLEGITMSAQRITETFTGEGANAAGGVPAGEDP 299 Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 + V + ++ EE NYE++ YK+ + I V+V Sbjct: 300 ADSLGTTYVGSTDGDGDYERIEETMNYEVSRVMKEIVESPYKVRDIGIQVMVEPPT---P 356 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGD--------TITITSMDFLENQLFNSGT 423 ++ + + +I + + D + ++ +F Q F S Sbjct: 357 DDPTSLPLETQDDITQILSTIIRTSIDKESNPDLTPEAIEQKVVVSVAEFNGKQEFTSTN 416 Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 + + V L V L + + R + ++ E +S P Sbjct: 417 IPAIPWWVY-----------VIGGILLAVIILLIFMIVRSRKNNIEEELEYEEPVRISIP 465 Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 ++ + + +L M E FA Sbjct: 466 DVNEEKES-------------------------------ETTVRKKQLEKMARDKPEEFA 494 Query: 544 KILRKWARSE 553 K+LR W E Sbjct: 495 KLLRTWMTEE 504 >gi|317129209|ref|YP_004095491.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522] gi|315474157|gb|ADU30760.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522] Length = 532 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 90/566 (15%), Positives = 193/566 (34%), Gaps = 69/566 (12%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + + + +L + IL+ +++F+A +F + +Y LY L V + I L Sbjct: 13 IEFWQGRTKRQRGLLVTTILLILLVFLAFMWFGSRTNYVPLYSNLTVQETGEIKNTLDAR 72 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 + +S +G+SI VP + V + ++ LAA+GLP+S Y F + FG T + Sbjct: 73 GVPSEVSSDGTSILVPEAQVNELKVSLAAEGLPNSG-RIDYSTFSENMGFGTTDNTFNLL 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSVYKS 187 AL+ I I++I G+ A+V I +P+ + + ++ Sbjct: 132 ERAALQTSIEDLIRNIDGVRNAQVMITLPEESVWLSDDREAATASVLLNLDHGYSLDQNQ 191 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEI 241 A+ HLV+ ++PNL + ++ ++D + L ++ + I + I+ ++ Sbjct: 192 VRALYHLVSRSIPNLPVENIVMMDQMSRYLELDDQTTTVDSSLTIYEQQRQIQRDIERDL 251 Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQR 296 + + + L +G D V +L+ + +E + P S + SI + Sbjct: 252 QRQVQQMLGTMVGTDKVLVTVSTDLDFTQENRQEQLVTPVNEEDMSGIAVSIERITETYT 311 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + + +K EE+ N ++N YK+ Sbjct: 312 GQELADGGVAGTGETDIPGYPGVGNGGVG--DYEKMEERINNDVNRIQREIVESPYKIRD 369 Query: 357 LSIAVVVNKGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGIN-------SRRGDTIT 407 ++I V++ L + +Q ++++ + +IV + I Sbjct: 370 IAIQVMLEPQVLEDATPEQLQQEQERVNAVQQMLGQIVRTSIDAEYTAQWEEEDIDSRIF 429 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 ++S F + F + + Sbjct: 430 VSSQQFFGKPDIPEPPSNIPFWYYIVGG-----------------------------LVL 460 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + P + +N +D + Q Sbjct: 461 LILILIILLFRKGKPSEELDMMEVVEQSGNNEIEPIKEKDTEGN--------------QR 506 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L + + E F+K++R W + Sbjct: 507 RKQLEKLAKDKPEEFSKLIRTWLSED 532 >gi|299066535|emb|CBJ37725.1| putative Flagellar M-ring protein FliF [Ralstonia solanacearum CMR15] Length = 506 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 88/422 (20%), Positives = 160/422 (37%), Gaps = 29/422 (6%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 L L + + + ++ Y L+ L D + L Sbjct: 8 IRDLWEGLSALARAGLVAGAICIAVAMGVFSYWALHTDYQVLFSDLTPQDSAAMVAELDR 67 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 + +++ D G+SI V V K RI L + LP + G ELF+ + FG+T F Q+I Sbjct: 68 LKVPYQLGDQGTSILVARDQVYKTRIKLMGKDLPLHGA-VGLELFNNSD-FGMTEFAQKI 125 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKS 187 RAL+GE+ RTI S+S I RVH+ +P+ G F++ G+R A+V + + Sbjct: 126 NYQRALQGELTRTILSLSEIHDVRVHLALPEQGLFKQAGSRAKAAVTLTLKQGQVLRPEQ 185 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMN 244 I+ LV+A+VP + DVT++D G L + E E + L + + ++ ++ Sbjct: 186 ITGIQRLVSASVPGIATQDVTIVDQHGVALTRASGAEGEIDATSGRLDLKKETENYLQRK 245 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + L G ++V L+MD Q P + + E+ + Sbjct: 246 VADVLERSFGPGQSIASVDVTLDMDRIQTTTEDVIPAASRTGHTPSGVVTRERESVRDNG 305 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 A D +V + +++Y + + + R+ + + Sbjct: 306 AP---------LDTRVADASGGARGGSSQRETDYAVGRRVEQVVSQPGSVRRIQVVAM-- 354 Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 + ++V+AA G + RGD++ + + L Q Sbjct: 355 -----------VRTPLDADQQERLRRLVAAAAGASFERGDSVVVQPLGALVTQGAVDAPA 403 Query: 425 QV 426 Sbjct: 404 DT 405 >gi|288553065|ref|YP_003425000.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4] gi|288544225|gb|ADC48108.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4] Length = 524 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 97/566 (17%), Positives = 199/566 (35%), Gaps = 71/566 (12%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + + + + + I A + +L + N + LY L + + +I L Sbjct: 10 QKVTEFWSGRTKKQKSIYAGAFIAVALLLILLLLLGNRSNNVPLYSNLTLQETGQIKETL 69 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I ISDNG++I VP +MV ++ LAA+G+P S S Y F FG+T Sbjct: 70 DARGIPAEISDNGTTILVPEAMVDSLKVDLAAEGIPRSGS-IDYSFFQDQMGFGMTDNEF 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSV 184 + ++ E+ I++I+G+ A V I +P+ + + ++ Sbjct: 129 SVMERGLMQTELQDLIRNINGVNHANVMITLPEESVWLNTTQEAATASIVVDLAPGYQLD 188 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQH 239 +A+ HLV+ +VPNL + ++ +++ + + + +I + I+ Sbjct: 189 QNQVKALYHLVSKSVPNLPIENIVIMNQMFEDYFYDNDGNQSTTLSAFEQQRTIQREIER 248 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-----SIRLSKDA 294 ++ +N+ + L +G D +V +++ + +E + +P SI + Sbjct: 249 DLTLNLQRMLGTVVGQDKVLVSVTTDIDFTQENRQESLVEPVDPENIEGIAVSIERVTET 308 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 E + + +P+ ++ E++ N E+N + YK+ Sbjct: 309 YTGEGTPAGGVEGTGEGIPNFPGAVGQGES---EYERTEDRINNEVNRINRDIVESPYKI 365 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GINSRRGDTIT 407 L I V+V Q ++D + IV + + + I Sbjct: 366 RDLGIQVMVE----PPEGMDVLPQERLDDIQQILGTIVRTSISGVYADELTEAGINEKIY 421 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 ++S F TVI +++V +LV + L + + Sbjct: 422 VSSQPFEGKPDTTQAP-------------LTVIPVWMYVVAGVLVVIIILLIVLLMRKRK 468 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 ++ E+ + + P TG Sbjct: 469 QEEEEELVIQQQAAVVPDLPDEDTGESAT------------------------------K 498 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L M + E F+K+LR W + Sbjct: 499 RKQLERMAKEKPEEFSKLLRTWLSED 524 >gi|261407984|ref|YP_003244225.1| flagellar MS-ring protein [Paenibacillus sp. Y412MC10] gi|329929286|ref|ZP_08283039.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5] gi|261284447|gb|ACX66418.1| flagellar M-ring protein FliF [Paenibacillus sp. Y412MC10] gi|328936655|gb|EGG33098.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5] Length = 526 Score = 247 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 97/566 (17%), Positives = 219/566 (38%), Gaps = 64/566 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 +++ Q++ ++ + ++L + + ++ + + Y+ + L SD I Sbjct: 9 RERMTQYWNQFSN---KQKIMLIATVAFVLIALVVLTMQFSKTKYEVAFRDLNSSDAAGI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122 L I +++S++G SI VPS+ K +I + +QGL + G+E F+K ++ G+ Sbjct: 66 ISHLETQGISYKLSEDGRSILVPSTSAAKVQIDVGSQGLVQNG-TIGFETFEKNASAIGM 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMIRAI 180 T E+ V AL GE+ R ++ + G+ A V + +P F K + +ASV+++ Sbjct: 125 TDNEFEVKYVNALNGEVERLLEKMQGVQDATVLLNLPKESVFAKNGNEDQASASVVVQFK 184 Query: 181 NPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIV 234 + +LV A+PNL + ++T+ + +LL + + + ++ ++ Sbjct: 185 PGYRPNQEVIDGYYNLVKTAIPNLPIENITITNDEVELLATAKGGQGGLIGKVEENFALQ 244 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + ++++ N+ + L+ ++G + V ++LN D Q +E + P +E S++ Sbjct: 245 KKFENDVRQNVQQFLSQYMGSNKVNVLVASKLNFDQVQSKENIVTPVDEEEMKGIELSVQ 304 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + S V + + +++ + NYE+N + Sbjct: 305 EIQKNYSGTGSPTGGVAGVGEEAVPGYPSDSGSGETN--SEELSKTVNYEVNRITKDIIA 362 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV--SAATGINSRRGDTIT 407 Y ++ L+I V V + L + + + + + S +T ++ ++ Sbjct: 363 SPYTVKDLTINVSVEPPAGQQTLDDATRTAIQNILVNIVRASLSDSDSTYTDADLSKKVS 422 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + S F N N +V F+ + + + L+ +RR Sbjct: 423 VISQVFNVNADENPKSV-----------FSQPVLWGIGIAALALIAGGTYFFIRRRRQQQ 471 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + ++ + P I+ T Q Sbjct: 472 EELEEDIQLPPVTEFPSINLESITNE-------------------------------SQV 500 Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553 +L + + + F +LR W E Sbjct: 501 RKQLETLAKKKPDEFVNLLRTWLAEE 526 >gi|296531738|ref|ZP_06894564.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] gi|296267937|gb|EFH13738.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957] Length = 472 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 194/370 (52%), Gaps = 9/370 (2%) Query: 50 NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109 LY LE ++ RIS L E I +G +I VP V + R+ LAA+GLP + Sbjct: 55 LLYAGLEPAEAGRISARLEELKIPVEARGDG-TILVPMDQVARLRMQLAAEGLPRQGG-A 112 Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 GYEL D+ + +TSFMQ + R+RALEGE+ARTI ++ G+ AARVHIV+P+ SF + Sbjct: 113 GYELLDQTSPMQMTSFMQRVQRLRALEGELARTIVTMQGVRAARVHIVLPERESFSRDAP 172 Query: 170 RPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 PTASV + A A AIR LVA AVP L DV+V+D G +L A+ Sbjct: 173 PPTASVTVTTSAGQRLGAAQAAAIRLLVAGAVPRLRQEDVSVMDGNGVVLAADGGMGAAA 232 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 G+ I A +H ++ + L +G R+ E+ R +DP +VER Sbjct: 233 GRLGEIRVAQEHALQKAVLDLLEPLVGRGKVRAVASVEVEGARTVARAETFDPLGQVERG 292 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 +L + + SE + ++ VTV QN+P+ RS+ + E N+EI++K T Sbjct: 293 RQLQTEQENSEDGRGQAPVTVGQNLPN-QQVNQNATRSVSAVQRNNETVNFEISSKVEET 351 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 + ++R+S+AVVV+ Q + + L + +V +A G N +RGDT+T Sbjct: 352 VREPGAVKRVSVAVVVDGIT----DAEGNVQPRPPAELERLAALVRSAVGYNQQRGDTVT 407 Query: 408 ITSMDFLENQ 417 + ++ FL ++ Sbjct: 408 VDTLRFLPDE 417 >gi|299534787|ref|ZP_07048117.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1] gi|298729875|gb|EFI70420.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1] Length = 531 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 82/562 (14%), Positives = 192/562 (34%), Gaps = 64/562 (11%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 + TS + + +++ ++ I L FF + Y LY L ++ ++ AL Sbjct: 14 QFWTSRSKKQKIVMIGSVVGVIALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALDSQG 73 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131 + ++I+ G+SI VP V + LA++G P + S Y F + FG+T + + Sbjct: 74 VTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGS-IDYS-FANSSGFGMTDNEFNLLK 131 Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSVYKSA 188 A E EIA+ +++ G+ A+V I +P+ G F + ++ + Sbjct: 132 KAATETEIAKLFKNLEGVKDAKVMITVPEEGVFVTDVQGEATASIVLNTDPGYKFTEQQI 191 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQHEIEM 243 + +LV+ ++PNL ++ + + + TA+ L + + ++ +++ Sbjct: 192 TTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATADGTSTTTAEGQLQMKKLVERDLQR 251 Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSE 298 + L +G D +V +++ + E + P + S + + Sbjct: 252 QVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISAQRITEQYSGT 311 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + + + + ++ EE N ++N YK++ + Sbjct: 312 GAAAAAGTPEAETTTDNFTTYNEGAAGNGDYERTEETINNDVNRIRKDIQEAPYKIQDIG 371 Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRRGDTITITSM 411 I V+V T+ + + ++ IV + + + + ++ Sbjct: 372 IQVIVEPPTATDAASLPDGVQEDIEKI--LSTIVRTTISKDVAAELTQEQIDEKVAVSVQ 429 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 + + + + + L LL+ F + + +R ++ Sbjct: 430 PLYGKATEVADEKPIIPWWVW-------VIGGILLAVILLLAFFIIRSRKRAKEEEELSI 482 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E + ++ + +L Sbjct: 483 LEEQEELMVDDINEEIETEATM---------------------------------RRKQL 509 Query: 532 LHMIEINEERFAKILRKWARSE 553 M + + FAK+LR W + Sbjct: 510 EKMAKEKPDDFAKLLRSWIAED 531 >gi|169827120|ref|YP_001697278.1| flagellar MS-ring protein [Lysinibacillus sphaericus C3-41] gi|168991608|gb|ACA39148.1| Flagellar M-ring protein [Lysinibacillus sphaericus C3-41] Length = 531 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 87/571 (15%), Positives = 195/571 (34%), Gaps = 67/571 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I + QF+K S + + +++ ++ I L FF + Y LY L ++ + Sbjct: 8 IKNDTSQFWK---SRSKKQKIVMIGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + AL + ++I+ G+SI VP V + LA++G P + Y F + FG+ Sbjct: 65 VKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTG-TIDYS-FANSSGFGM 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRA 179 T + + A E EIA+ +++ G+ A+V I +P+ G F K A + + Sbjct: 123 TDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTDP 182 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIV 234 + + +LV+ ++PNL ++ + + + T + L + Sbjct: 183 GYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGASTTTAEGQLQMK 242 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289 + ++ +++ + L +G D +V +++ + E + P + S + Sbjct: 243 KLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISAQ 302 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + + + ++ EE N ++N Sbjct: 303 RITEQYSGTGAGAATGTPEAETTTDNFTTYNEGTSGNGDYERTEETINNDVNRIRKDIQE 362 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRR 402 YK++ + I V+V T+ S G + ++ IV + + Sbjct: 363 APYKVQDIGIQVIVEPPTATDA--ASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + + ++ + + + + + L LL+ F + + +R Sbjct: 421 DEKVAVSVQPLYGKATQVADEKPIIPWWVW-------VIGGILLAVILLLAFFIIRSRKR 473 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 ++ E ++ + Sbjct: 474 AQEEEELSILEEQEDLMIDDINEEIETEATM----------------------------- 504 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L M + + FAK+LR W + Sbjct: 505 ----RRKQLEKMAKDKPDDFAKLLRSWIAED 531 >gi|158320512|ref|YP_001513019.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs] gi|158140711|gb|ABW19023.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs] Length = 515 Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 98/564 (17%), Positives = 205/564 (36%), Gaps = 64/564 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +I Q + + + + ++LAS + ++ ++ + P Y LY L Sbjct: 4 SINQIRNQLNEYFQGMDKKKKIMLASGTIFILLALTGIIYYFSRPEYVELYSNLRPEQTG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L+E NI + I VP +A++ +A +GLPS+ + +E NSF Sbjct: 64 EIIERLTENNIKAKFGQTSGIILVPKEDQKRAQVVVATEGLPSAKFS--FEDVFSGNSFM 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF----RKIGARPTASVMI 177 +TS + V AL+ +A I+ I+G+ +A V +V+P+ F A+ + + + Sbjct: 122 MTSEEKSKQYVYALQNYLASIIEEINGVKSANVALVVPENSGFILKNNNNLAKASVRLDL 181 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234 + S I LV+ AV L +VT+ S G++L + + + +L++ Sbjct: 182 QGNAILDKNSINGIAILVSNAVEGLSPENVTIHGSDGRVLNTDSDEDSDVFASNNNLALQ 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIR 289 Q+++ ++E +I L+ G N +L+ D++ + P + + RS++ Sbjct: 242 QSVKEKLEESITNFLSNVYGYGNIVVMANVKLDFDSEVTEIKEFAPPIEGETTGIPRSLQ 301 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + + V + NYEIN Sbjct: 302 ELSKESVNGGTGGAPGTPTNADDDTDPAQYVVGDEEYSTYSEASRTINYEINELYKKIVK 361 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 +++ +++AV VN L + ++ I+SAA G++++ + + Sbjct: 362 AQGQVKDITVAVFVNSAALADGD-------LTAEQRTDLANIISAAAGLDTK---VVQVG 411 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 F + ++ + L + ++ LV L A R N + A Sbjct: 412 VQQFNNGAMEPGDSLAGTSSSSLPLW-------AIGMIAVALVGITYLIASSRAKNKNKA 464 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + I ++ Q Sbjct: 465 MEPLEEMIIPETIAEIDLELSG---------------------------------SQVKQ 491 Query: 530 RLLHMIEINEERFAKILRKWARSE 553 ++ ++ E A++L+ W + Sbjct: 492 QIEKLVSKKPEAVAQLLKNWLNED 515 >gi|333004041|gb|EGK23575.1| flagellar M-ring protein domain protein [Shigella flexneri K-272] gi|333017814|gb|EGK37121.1| flagellar M-ring protein domain protein [Shigella flexneri K-227] Length = 261 Score = 246 bits (627), Expect = 9e-63, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 5/263 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRS 260 + I+ I L+ +G N + Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHA 261 >gi|333003033|gb|EGK22587.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6] Length = 261 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 5/263 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PSRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRS 260 + I+ I L+ +G N + Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHA 261 >gi|332756092|gb|EGJ86445.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70] gi|333003272|gb|EGK22818.1| flagellar M-ring protein domain protein [Shigella flexneri K-218] Length = 261 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 5/263 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238 Query: 238 QHEIEMNINKALAAFLGVDNFRS 260 + I+ I L+ +G N + Sbjct: 239 EGRIQQRIEAILSPIVGNGNIHA 261 >gi|295706285|ref|YP_003599360.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319] gi|294803944|gb|ADF41010.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319] Length = 530 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 102/570 (17%), Positives = 213/570 (37%), Gaps = 68/570 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D++ F+ + + + + L + L +++ A F+N + LY L + +I Sbjct: 9 RDKMKVFWNNRK---KGQKIALIAAPLAAVLVISLASVFLNQDKFVPLYSNLSAQETGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L ++ ISDNG++ISVP V ++ LAAQG+P S S Y F K SFG+T Sbjct: 66 KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI--RAI 180 + ++ A++ E+A +++I G+ A+V I +P+ + +AS+++ +A Sbjct: 125 DNEFNVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQA 236 + +++ HLV+ +VPNL ++ +++ + E N + Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEAKKE 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291 ++ +I+ + + L +G D +V A+L+ + E + +P + S Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + E +Q + + +K EE+ NYE+N Sbjct: 305 NETFSGENAQDGGVAGTGEEDTTNYSSSTTSGDG--DYEKNEERINYEVNRIHKEIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR--------G 403 YK++ L I V+++ + IV + ++ Sbjct: 363 YKIQDLGIQVMIDPSNAKGK--LQVSDTLESDVQKMLGTIVRTSISKDANTKDLSDNAVS 420 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D IT++ F + ++ + I L+ +++ L + R+ Sbjct: 421 DKITVSVQPFNGQETADNTASSIPLW--------MYITGGALLLIIVVLIVLLVRKRRQD 472 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + A++ Sbjct: 473 LDEEEYNEEYDETFEAYEAAQKAPALSAE------------------------------- 501 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 +Q+ L + + + E FAK+LR W + Sbjct: 502 -QQTKTNLETLAKQDPEEFAKLLRTWISED 530 >gi|251797445|ref|YP_003012176.1| flagellar MS-ring protein [Paenibacillus sp. JDR-2] gi|247545071|gb|ACT02090.1| flagellar M-ring protein FliF [Paenibacillus sp. JDR-2] Length = 527 Score = 244 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 99/567 (17%), Positives = 206/567 (36%), Gaps = 54/567 (9%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I + + +G+ + + L + I ++ + + Y+ + L+ + Sbjct: 1 MNERIAQYRQRLTQFWGQMGKKQKIGLGASIGALLLTIVILTYIFTRTDYEVAFQNLDTT 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L I +++S +G SISVPS++ + R+ + +QGL + S G+E F+ + Sbjct: 61 DAAAIMTYLDGNGIPYKLSADGQSISVPSAVATRTRVDVGSQGLVQNGS-IGFEAFEGGS 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVM 176 +FG T + + AL GE+ + + + G+ +++V I +P F + + +AS+M Sbjct: 120 AFGQTENEFNVKYINALNGEVQQLLNRMQGVQSSKVLINLPKESVFLTPEEKEQASASIM 179 Query: 177 IRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER------NILG 228 + + +LV AVP L + D+T+ G+L+++ + Sbjct: 180 MNFTPGYRPSQQEVDGYYNLVKTAVPKLAVQDITISSPQGELVSSEIDGNKIGAATDAAE 239 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVER 286 I + + E++ NI + L+ LG DN +V + N D + +E + P ++ Sbjct: 240 SHFMIQRKYEAEVKKNIQQFLSPMLG-DNLVISVASSFNFDKKVTQENLVRPLENNNNNG 298 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 I + + T+ +A V + ++++ +NY+ + + Sbjct: 299 IIVSEQQDNSTTTNGSANAGGVAGTGETDVPGYTATDNTNGSSEQSSRVTNYDYDRINNQ 358 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 Y+L+ LSI++ V + +LT+ + A++ ++ + Sbjct: 359 IESAPYQLKDLSISIGVEQSKLTDQSRQELTNFLSSLVRAQLADSGQD-VNDDAMIAKKV 417 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 TI +F S + I A + + L ++ Sbjct: 418 TILGQNFAATDAGTSSSGLSMQWAIGLGAAALALIGGL-------TVMLVRRRRKQAEEA 470 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 A+ + P T Q Sbjct: 471 AAAEAAAMMETQAKPEFPTIDFETV------------------------------NNDSQ 500 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 + L + + E F +LR W E Sbjct: 501 ARKNLETLAKRKPEEFVNLLRTWLVDE 527 >gi|325926946|ref|ZP_08188226.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas perforans 91-118] gi|325542683|gb|EGD14145.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein FliF [Xanthomonas perforans 91-118] Length = 687 Score = 244 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 145/329 (44%), Gaps = 6/329 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + Sbjct: 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L A I ++I +ISVP + AR+ LA GL + G+EL +K FG++ Sbjct: 75 DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F++ ALE E++RTI ++ + ARVH+ +P +F + +ASV++ Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240 +AI +LVA+++P++ VTV+D +G++L+ + + V+ + Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 I + L G +++ + +Y+ + RS ++S + + Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENT 329 P+ N P +LE T Sbjct: 313 GPQGPPGATSNSPGQPPAAGNQALNLEET 341 >gi|296103640|ref|YP_003613786.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058099|gb|ADF62837.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 302 Score = 243 bits (620), Expect = 6e-62, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 5/284 (1%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + + +SL + L+L + + +A F+ P Y L+ + + I Sbjct: 11 NPAERIKSMLSSLRGSPKLLLVICGAAALSVIIALMFWAKEPDYRVLFSNISDEEGGAIV 70 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 LS+ N+ +RI G I VP+S V + R+ LA QGLP G+EL D+ FG++ Sbjct: 71 AQLSQLNVPYRIDTPGGVIMVPASQVHEVRMKLAQQGLPKGGG-VGFELLDQE-KFGVSQ 128 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182 F +++ RALEGE+ARTI+++ I +A VH+ P F + +PTASV + Sbjct: 129 FTEQVNYQRALEGELARTIENLGPIQSACVHLATPKPSMFVREQKKPTASVTVNLLQGRT 188 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 AI HL+++AV L G VT++D G LLT + + L I+ + + Sbjct: 189 LDDSQVVAITHLISSAVTGLAAGSVTIVDQRGNLLTQSGLRGLQTA-HLKYTSEIETDYQ 247 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 I + LA +G +N R+ V A+++ Q+ + Y P+S E+ Sbjct: 248 QRIQRILAPLVGDENIRAQVTAQIDFTEQEQTQEQYQPNSDPEK 291 >gi|56964034|ref|YP_175765.1| flagellar MS-ring protein [Bacillus clausii KSM-K16] gi|56910277|dbj|BAD64804.1| flagellar M-ring protein FliF [Bacillus clausii KSM-K16] Length = 527 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 107/569 (18%), Positives = 214/569 (37%), Gaps = 65/569 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +Q+ F+ ++L R + SV+L+ ++ A + +Y LY +L +++ Sbjct: 7 QFKNQVQTFWTESSTL---RKSAVISVVLLLLLAIALAAALLFRTNYAPLYSQLTLAEAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I AL + + R+S++G++I VP + V + ++ LAA+GLP S S Y F FG Sbjct: 64 QIQEALEQRGVAARVSNDGTTIHVPEADVDRLKVDLAAEGLPKSGS-IDYAFFQNQMGFG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178 +T + ++ E+A I+ + G+ A V I +P+ + G + + + + Sbjct: 123 MTDNEFTVIERSLMQTELAELIRGVQGVEQANVIITLPEESVWLNSGQESSTAAVVLQLE 182 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235 +A+ HL++ +VPNL + ++ + DS T E E + I Q Sbjct: 183 PGYTLDSSQVKALYHLISKSVPNLPIENIVLSDSQFNNYTYQEEETSPAASFQSQREIKQ 242 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRL 290 I+ +++ IN+ L+A +G +N +V A+++ +Q E + +P S + S+ Sbjct: 243 EIESDLKQTINQLLSAVVGPENAIVSVTADIDFTQEQRTEDLVEPVDEEEVSGLAISVER 302 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + T E V +P+ + +++ EE+ NYE+N Sbjct: 303 INEMYEGTTGNEEGVAGVGDEIPNYTGAAGGGDS---ESERTEERINYEVNRIHKEIIES 359 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN------SRRGD 404 Y++ L I V+VN ++ + A + I+ + GD Sbjct: 360 PYEIRDLGIQVMVN----PPEGMQALPPQQTADITAMLETIIRTTLPDDGEEEGEQDVGD 415 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 + +TSM F + + + + + + Sbjct: 416 RVVVTSMPFAQTETGEAEQPSSATIPVWIY------------------------------ 445 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 G +L + D + + Sbjct: 446 -------AVAAGLVLLIIILAVLLYRKREPADLAEEQDEAAEPEPEQEDEPLMETEETEE 498 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 + +L + + E F+K+LR W E Sbjct: 499 SKQMRQLNRLAKEQPEDFSKLLRTWLSDE 527 >gi|308068652|ref|YP_003870257.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681] gi|305857931|gb|ADM69719.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681] Length = 527 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 93/576 (16%), Positives = 204/576 (35%), Gaps = 74/576 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +++ Q+ + + + ++L S + I+ + Y+ + L + Sbjct: 1 MNERIAQYRDKISGYWNNFSKKQKILLVSTLAFIIIAVVVLTMQFTKTEYEVAFRDLNAN 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D + L A I ++++ G+ ISVP++ KA++ + +QGL S G FD+ + Sbjct: 61 DAAGVIKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSS 119 Query: 119 S-FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175 S G+T + AL GEI + ++ + G+ +++ I MP F + + +AS+ Sbjct: 120 SAIGMTENEFNVKYNNALNGEIQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASI 179 Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS- 230 + + +LV AVPNL + ++T+ + +L+ G Sbjct: 180 QMEFEPGFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQE 239 Query: 231 -LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKV 284 +++ + + ++ N+ + L+ +G D V+++LN D +E + P + Sbjct: 240 NMALQKKFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGI 299 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 E S + +++ + Q V ++DK NYE+N + Sbjct: 300 EISAQQIQESYTGSSGQTGGVAGTGTQ--DVPGYPGGANSGNTSSDKSSSTINYEVNRIA 357 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG------- 397 Y ++ L+I V + G+ + + I + A+ Sbjct: 358 RDIIQSPYTVKDLTINV-----AVEPPTGQQTLDTATQTAIQNILVNIVRASLANSGTTI 412 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 ++ +++ S N +F + + A++ L+ V FL + Sbjct: 413 TDADLAKKVSVFSQAVPAPASTN------TFFSASNPWLWGIGAAVLALLAG--VIFLIV 464 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 R+ D + + + Sbjct: 465 RGRRKQEEELDEELQLMP---------------------------------TPTEFPSIT 491 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + Q +L + + + F +LR W E Sbjct: 492 MESVTNESQVRKQLESLAKKKPDEFVNLLRTWLADE 527 >gi|304404244|ref|ZP_07385906.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9] gi|304347222|gb|EFM13054.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9] Length = 527 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 91/565 (16%), Positives = 202/565 (35%), Gaps = 61/565 (10%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D+L Q++ + G+ + + L + I+ + + + Y+ + L+ +D + Sbjct: 9 RDRLSQWW---SQTGKKQKIWLGGTLGFLILAIILLTYIFSRTDYEIAFQNLDTTDSAAV 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGL 122 L + I +++S +G SI VPS++ + +I + +QGL + S G++ F++ +S +G Sbjct: 66 MTYLDSSGIKYQLSSDGKSILVPSAVASRVKIDVGSQGLVRNGS-IGFDSFNQNSSQWGT 124 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181 T + AL GE+ + + ++ G+ +++V + +P F + AS+ ++ N Sbjct: 125 TDNEFNVKYRNALNGEVQQLLNNMQGVESSKVLVTLPQESVFADREEEHAIASITLKFTN 184 Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI------LGKSLSI 233 + LV AVPNL + D+T+ + G+L+++ + I Sbjct: 185 GYRPSQKEVDGYFKLVKTAVPNLAIDDITIASTEGELVSSEAGGSPANGGTEVADQLFQI 244 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288 + + E++ NI + L+ +G N + + LN D + + + +P + V S Sbjct: 245 QRKYETELKKNIQQYLSTMIGEGNVAVYIASSLNFDQKTSEQNLVEPIANNNNKGVVLSE 304 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 + + + S V + ++ NYEIN Sbjct: 305 QETSKTSTNTDSAVGGVPG--SGETDVPGYTAANGAGNSSNEETSSIRNYEINRIKNIVE 362 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 + ++ L+I++ VN+ L ++ + +S +T+ Sbjct: 363 SSPFMIKDLNISIGVNRASLQGEAQTQITNYVKQILRTQLAQSGLD-VTSDSVVSQRVTV 421 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + DF + + + A + + L+ + +R+ + Sbjct: 422 MAQDFAAGGAGSESSKLSTAW-----------MAGIGIAALALIAGFAIGMMRKRKRNAE 470 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 E + + + Q Sbjct: 471 IAAAEAAAAADPVRVEFPTLDLD----------------------------SGANDHQVR 502 Query: 529 LRLLHMIEINEERFAKILRKWARSE 553 L + + E F +LR W E Sbjct: 503 KNLETLAKRKPEEFVNLLRTWLVDE 527 >gi|4378873|gb|AAD19741.1| flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 555 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 101/536 (18%), Positives = 190/536 (35%), Gaps = 73/536 (13%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++++ + K + + ++ + F +++P +LY D Sbjct: 32 DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRA 91 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ AL I + I I+V KAR LA QGLP S+ + + + G Sbjct: 92 SIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVHVI--SSLPLG 149 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 + ++ A E +ARTI++I + ARVHI P F + TASVM++ Sbjct: 150 ASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238 +AI++LVAA+VP + V+V+D G LL+A + +I + L + Q ++ Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 +NK L LG +N+ + V +L+ Q Y + + + Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327 Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320 Q NMP Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387 Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 + + + YE+ + + ++R+S+A+ + + Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447 Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 + +A++ K++ A G ++ RGD + I+S DF+ +F+ Q S Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483 ++ +L+R+ L L+ LV F + ++ Sbjct: 500 WVPLLARN-------LSALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQ 548 >gi|310641543|ref|YP_003946301.1| flagellar m-ring protein flif [Paenibacillus polymyxa SC2] gi|309246493|gb|ADO56060.1| Flagellar M-ring protein FliF [Paenibacillus polymyxa SC2] Length = 527 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 93/576 (16%), Positives = 205/576 (35%), Gaps = 74/576 (12%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +++ Q+ + + + ++L S + I+ + Y+ + L + Sbjct: 1 MNERIAQYRDKISGYWNNFSKKQKILLVSTLAFIIIAIVVLTMQFTKTEYEVAFQDLNAN 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D + L A I ++++ G+ ISVP++ KA++ + +QGL S G FD+ + Sbjct: 61 DAAGVIKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSS 119 Query: 119 S-FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175 S G+T + AL GE+ + ++ + G+ +++ I MP F + + +ASV Sbjct: 120 SAIGMTENEFNVKYNNALNGEVQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASV 179 Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS- 230 + + +LV AVPNL + ++T+ + +L+ G Sbjct: 180 QMEFEPGFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQE 239 Query: 231 -LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKV 284 +++ + + ++ N+ + L+ +G D V+++LN D +E + P + Sbjct: 240 NMALQKKFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGI 299 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 E S + +++ + Q V ++DK NYE+N + Sbjct: 300 EISAQQIQESYTGSSGQTGGVAGTGTQ--DVPGYPGGANSGNTSSDKSSSTINYEVNRIA 357 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG------- 397 Y ++ L+I V + G+ + + I + A+ Sbjct: 358 RDIIQSPYTVKDLTINV-----AVEPPTGQQTLDTATQTAIQNILVNIVRASLANSGTTF 412 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 ++ +++ S Q + T +F + + A++ L+ V F + Sbjct: 413 TDADLAKKVSVFS------QAAPAPTSTNTFFSASNPWMWGIGAAVLALLAG--VIFFIV 464 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 + R D + + + Sbjct: 465 RSRRNQEEELDEELQLMP---------------------------------TPTEFPSIT 491 Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + Q +L + + + F +LR W E Sbjct: 492 MESVTNESQVRKQLESLAKKKPDEFVNLLRTWLADE 527 >gi|328911724|gb|AEB63320.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens LL3] Length = 510 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 94/551 (17%), Positives = 188/551 (34%), Gaps = 63/551 (11%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 + S + I+L + F +S LY L + +I L + ++D G+ I Sbjct: 1 MVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEAGQIKEELDTKKVSSELADGGTVIM 60 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 VP S V ++ LAA+GLP + S Y F K FGLT ++ +V A + E++ I Sbjct: 61 VPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGFGLTDNEFDVLKVDATQTELSNLIN 119 Query: 145 SISGIVAARVHIVMPDMGSF-RKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPN 201 + GI +++V I MP F + +AS+++ + + HLV+ +VPN Sbjct: 120 EMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPN 179 Query: 202 LDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 L ++ ++D ++ + I ++ +I+ ++ L +G D Sbjct: 180 LKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDK 239 Query: 258 FRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 +V A+++ ++ E + +P + S + + + + N Sbjct: 240 VVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISAEKVAETYKGDGAANGGTAGTGSN- 298 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 + + + +K + NYE+N YK+ L I V+V Sbjct: 299 DTANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEPP---NPK 355 Query: 373 GRSADQGKIDSYLAEINKIVSAATG----------INSRRGDTITITSMDFLENQLFNSG 422 ++ + + + +I V + N+ + I ++ F N+ Sbjct: 356 NAASLTAQRQADIQKILGTVVRTSLDKNEAQNQKLTNNDINNKIVVSVQPFDGKVSTNTA 415 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 + S + I V + + Sbjct: 416 SANSSGLPIWVYITGGV------------------------------------LLAAIIL 439 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 I ++ + ++ N +L M + E F Sbjct: 440 LIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEQNETEETVRRKQLEKMAKEKPEDF 499 Query: 543 AKILRKWARSE 553 AK+LR W + Sbjct: 500 AKLLRSWLDED 510 >gi|294500939|ref|YP_003564639.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551] gi|294350876|gb|ADE71205.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551] Length = 530 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 100/570 (17%), Positives = 212/570 (37%), Gaps = 68/570 (11%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 D++ F+ + + ++ ++ I L A F+N + LY L + +I Sbjct: 9 RDKMKVFWNNRKKGQKIALIAAPLAAILVISL---ASVFLNQDKFVPLYSNLSAQETGQI 65 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L ++ ISDNG++ISVP V ++ LAAQG+P S S Y F K SFG+T Sbjct: 66 KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI--RAI 180 ++ ++ A++ E+A +++I G+ A+V I +P+ + +AS+++ +A Sbjct: 125 DNEFDVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQA 236 + +++ HLV+ +VPNL ++ +++ + E N + + Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEVKKE 244 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291 ++ +I+ + + L +G D +V A+L+ + E + +P + S Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + + +Q + + +K EE+ NYE+N Sbjct: 305 NETFSGKNAQDGGVAGAGEEDTTNYSSSTTSGDG--DYEKNEERINYEVNRIHKEIVESP 362 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR--------G 403 YK++ L I V+++ + IV + ++ Sbjct: 363 YKIQDLGIQVMIDPSNAKGK--SQVSDTLESDVQKMLGTIVRTSISKDANTKALSDNAVS 420 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D IT++ F + ++ + I L+ +++ L + R+ Sbjct: 421 DKITVSVQPFNGQETADNTASSIPLW--------MYIIGGALLLIIVVLIVLLIRKRRQD 472 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + ++ + + ++ Sbjct: 473 LDEEEYDEEYDETFEAYEAAQKAPVLSAE------------------------------- 501 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 +Q+ L + + + E FAK+LR W + Sbjct: 502 -QQTKSNLETLAKQDPEEFAKLLRTWISED 530 >gi|149184178|ref|ZP_01862496.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21] gi|148831498|gb|EDL49931.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21] Length = 517 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 100/547 (18%), Positives = 194/547 (35%), Gaps = 41/547 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + +S + R + + L ++ LY L ++ + Sbjct: 2 FGERLRSFAAQSAVRKAAPWFAGVAGMGLLALTWAALSPAPQRVLYSSLGDAERASVVTT 61 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L +A I + I + +++V V +AR+ +A+ G S ++ G + + Sbjct: 62 LDKAGISYTIDSSTGALTVGEDDVYRARMLVASDG--SLAAPETGSDLIASLPMGASRTL 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184 + A E E+ TI I G+ A RVHI + F + P+AS+M+R Sbjct: 120 EGDRLRAAQERELTMTIMEIVGVEAVRVHIAKAERSVFVREDVAPSASIMVRLARGRQLT 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 AI +LVA +VP L + V V+D GKLLT + + ++ ++ Sbjct: 180 DGQVVAITNLVAGSVPGLSIDAVKVVDQHGKLLTQARDPH---SGRIDLQAQMEAKLNSQ 236 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 +++ L G F + V EL+M+ YD D V R + +S Sbjct: 237 VSQLLTPMFGAGAFTAQVQVELDMNEVTSARESYDKDGTV---RRETTQQSQSSDVTAGG 293 Query: 305 AVTVEQNMPHV-------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 V N P + + + YE+ + + + ++ L Sbjct: 294 IPGVLANTPPAEGEARQGAPNDTQQGNTAGGIGESSATRVYELGREVLVSNLSPGSVKYL 353 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S+AV +++ L + + + ++ ++V+AA G RGD +T+ F + + Sbjct: 354 SVAVAIDQAALAKA---------SAADINKVKELVTAAVGAREDRGDKVTVVMRPFEKIE 404 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + S+ + R+ ++ L+ L+ + L + G Sbjct: 405 AEEVPFYETSWFAMAVRNGVAILAVLLVLLLAVRPAIKALRGM---------------GV 449 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 S + V + D S N++ L R+ + L L ++ Sbjct: 450 SDKTAGSSGEGVALPIPTYDIEGTTSLNRETLDGQIELAQRVARENPDDAVLALRRLLAE 509 Query: 538 NEERFAK 544 + A Sbjct: 510 DARAGAS 516 >gi|116327841|ref|YP_797561.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330717|ref|YP_800435.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120585|gb|ABJ78628.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124406|gb|ABJ75677.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 566 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 115/586 (19%), Positives = 218/586 (37%), Gaps = 64/586 (10%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + T+L T+ LIL V L ++ + L+ L D ++ Sbjct: 9 LNNIREFFTTLDTTKKLILGGVALTVLVAIGILSTISLQKNRVVLFKDLTSKDFAEVTKK 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + S + S I+V + LA + L + G+ELF V+ F T F Sbjct: 69 LDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFTETQFD 125 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN---PS 183 ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I Sbjct: 126 KDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIPGVESL 185 Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI-----Q 238 K + I +LV+ AVP L +V+V D+ GK+++ E + L IVQ + Sbjct: 186 SRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKLRIGEE 245 Query: 239 HEIEM--NINKALAAFLG---------------------VDNFRSAVVAELNMDTQQIRE 275 I+ ++ L LG DN S VVA + E Sbjct: 246 QRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPNTPYSE 305 Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 + ++ S + +K+ + P+ E N+P K E Sbjct: 306 LKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIPP---GYKDTDYQKSEYSKSENI 362 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYLAEINK 390 +NYE N + +K+E+++++VV++ + + L +I K Sbjct: 363 NNYEFNRRVSEVQKQPWKVEKVNLSVVIDGMWEKKEKEDGTGYDRKYIPVSEDELRQIRK 422 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 + +A GI+ RGD I++ ++ + F + ++ + + +I A + ++ L Sbjct: 423 NLESAVGIDKARGDQISVITIPKDRSSQFAAEDEELRKQKAIRQ----MIIASLVIILLL 478 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 +V+ L A+++ + E + V ++LD Sbjct: 479 IVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDE------- 531 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 ++ +++ E A++LR W E Sbjct: 532 -----------KYRRELLENAINLAREKPEEVAQLLRTWLSEEEAS 566 >gi|255305272|ref|ZP_05349444.1| flagellar MS-ring protein [Clostridium difficile ATCC 43255] Length = 516 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 198/565 (35%), Gaps = 72/565 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +Q+ + +SL + + L ++ + + + Y L+ +L+V D Sbjct: 9 IKEQVAKSRTKISSLKKGTKIALGIGVVAICLALVFTAISASKNKYAVLFSELDVQDAAD 68 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 IS L ID ++ GS+I VP + V K R+ LA + + G+ L D +S GL Sbjct: 69 ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180 T +I + R ++GEI +TI+S + RVHI + F K +A+V M++ Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKPG 183 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------------ANEMERNIL 227 +++ L++ +V N+ +V V+D+ LL+ + Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPINGGISV 243 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD KV Sbjct: 244 DKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 SK++ +S T+ + + D +E YE T Sbjct: 303 ETRSKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +L RL+ +V ++ A++ IV+ A G++ RGDT++ Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + SM F + Sbjct: 402 VVSMVFDPEGKAEAKQELEEIKKEG------------------------------FKKNI 431 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + + + + S R + Sbjct: 432 IKAVIGAVAVVAIGAIGYLIYKKRSEQEDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491 Query: 528 DLRLLHMIEINEERFAKILRKWARS 552 + + E ++ +I++ W Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|313650158|gb|EFS14571.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T] gi|332757276|gb|EGJ87613.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71] gi|332757502|gb|EGJ87837.1| flagellar M-ring protein domain protein [Shigella flexneri K-671] gi|332766674|gb|EGJ96878.1| hypothetical protein SF293071_2322 [Shigella flexneri 2930-71] gi|333017624|gb|EGK36936.1| flagellar M-ring protein domain protein [Shigella flexneri K-304] Length = 259 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 77/263 (29%), Positives = 124/263 (47%), Gaps = 7/263 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELR--LAQQGLPKGGA-VGFELLDQE-KF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV + Sbjct: 117 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 176 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237 AI HLV++AV L G+VT++D G LLT + R++ L + Sbjct: 177 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 236 Query: 238 QHEIEMNINKALAAFLGVDNFRS 260 + I+ I L+ +G N + Sbjct: 237 EGRIQQRIEAILSPIVGNGNIHA 259 >gi|306820113|ref|ZP_07453761.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551891|gb|EFM39834.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 521 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 92/571 (16%), Positives = 221/571 (38%), Gaps = 68/571 (11%) Query: 1 MAILDQLLQFFKSGTSL----GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M +L+ + S S + +I+ + I+V +++ ++ + Y LY L+ Sbjct: 1 MYVLENINSVRNSINSYLEKYTKKQIITVGISIVVILIVMVSMIMYFTRTKYVTLYSNLD 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 ++ +++++ +L + +++ +SISVP S K I LA Q +P++ + + Sbjct: 61 LNTMSKVTQSLDSMGVQYKVDSQ-NSISVPESSRNKIMIDLAGQNIPNAKFD--FSNLIN 117 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG----SFRKIGARPT 172 +NS ++ + + AL +I+ I+SI + A+V + +P S K + + Sbjct: 118 MNSMFMSDDEKNTAKQYALTNQISSIIESIPAVEKAQVTLAIPKNSEFVLSENKQQPKAS 177 Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGK 229 +++++ + S I +VA +V L+ +VT+ G++L N +N G Sbjct: 178 VMLILKSGSQLSQDSINGIASMVAGSVEGLEPQNVTIHGPNGQILNQNSTGQNANMQTGT 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-- 287 +L + + ++ +IE ++ LA G +NF V +LN D + + + P + E S Sbjct: 238 NLEMQEKVKRDIENSLQNFLAPMFGYNNFSVMVSVKLNFDNETTQTKTFAPPVEGETSGL 297 Query: 288 -----IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 + + ++ + ++ + ++ E NYE+N Sbjct: 298 VRSEQQQKEQVENKNNALGTPGVTSNNNEAGGTTNYVTVDENGNSSYNRSESTVNYELNE 357 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402 ++ ++++V++NK L D +I +++ ATG++++ Sbjct: 358 IVKNVEKARGTIDSVTVSVILNKDTLEG-------GELSDEKRTQIVNLITTATGLDTK- 409 Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 + + + F + ++ + ++ + + L + LRR Sbjct: 410 --AVEVFAESFNKTDELSA--------QNTQGSIPMWQWIAIAVIALIPLILLTVTMLRR 459 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + ++ + + + A+ G+ + Sbjct: 460 SKAKNKKEELKKLENNAIRQQEEIEAIEIGMKESGK------------------------ 495 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + +I+ N E ++L+ W E Sbjct: 496 -----KKSIEDLIQKNPEIVTQLLKTWIEEE 521 >gi|126697819|ref|YP_001086716.1| flagellar MS-ring protein [Clostridium difficile 630] gi|115249256|emb|CAJ67069.1| Flagellar M-ring protein FliF [Clostridium difficile] Length = 516 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 105/565 (18%), Positives = 197/565 (34%), Gaps = 72/565 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +Q+ + +SL + + L ++ + + + Y L+ +L+ D Sbjct: 9 IKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDAQDAAD 68 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 IS L ID ++ GS+I VP + V K R+ LA + + G+ L D +S GL Sbjct: 69 ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180 T +I + R ++GEI +TI+S + RVHI + F K +A+V M++ Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKPG 183 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------------ANEMERNIL 227 +++ L++ +V N+ +V V+D+ LL+ + Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVDENNQPINSGISV 243 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD KV Sbjct: 244 DKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 SK++ +S + + + D +E YE T Sbjct: 303 ETRSKNSSKSAANNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +L RL+ +V ++ A++ IV+ A G++ RGDT++ Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + SM F + Sbjct: 402 VVSMVFDPEGKKEAKQELEEIKKEG------------------------------FKKNI 431 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 V + + + + S R + Sbjct: 432 IKAVIGVVAVIAVGAIGYLIYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491 Query: 528 DLRLLHMIEINEERFAKILRKWARS 552 + + E ++ +I++ W Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|157738171|ref|YP_001490855.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018] gi|157700025|gb|ABV68185.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018] Length = 574 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 107/577 (18%), Positives = 223/577 (38%), Gaps = 40/577 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLY---VKLEVSDVN 61 + Q K +L +++ +IL S + ++ + + + + Y L +DV Sbjct: 1 MDQLLKFINNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNYTIASNLTQADVM 60 Query: 62 RISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 R S L + I F +S +G+++++ +S + A+I L +++ + G+E+F+K +S Sbjct: 61 RASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFEK-SS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T+F ++ +RALEGE++R+++S+SG++ A V I +P F + A TAS +I Sbjct: 119 LGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASAVISL 178 Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQ 235 K + I++ +A+AVP+L ++ ++D G LL N E N Sbjct: 179 KQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQNKYKD 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 I+ + E I L +G + V L+ + + E +Y P+ + + Sbjct: 239 KIEKDYEAKIISLLEPVVGTGRVVAKVNVALDFVKKDVEEEIYSPEGSIRSQQVIENTNN 298 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-L 354 V N V + N++ +NYEI+ K I+ NY + Sbjct: 299 TQGMLPNNGGVAGVDNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKDGNYTNI 358 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +R++ +V + L + ++A + + A G + RGDTIT+ F+ Sbjct: 359 KRITASVTFDSAILKD-------HPDKGEFIASLESLSGDAIGYDRGRGDTITVKDFKFV 411 Query: 415 ENQLFNSGTVQVSFM----------------DILSRHFATVINALVFLVGTLLVTFLGLH 458 + N V + + + +L+ +L+ Sbjct: 412 GAKALNENGQLVDEFGNVINSGDGISVVGTMSTIKSILQDYKDYIQYLIVGILLFVFYKK 471 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + + + ++ + A + S N Sbjct: 472 FIASSDIVILGDGNKKKLEADDDDIVKEMLTNYESEFDTATAQGRLKSKVKSQILNNIEG 531 Query: 519 INSYVSKQSDLRLLHM---IEINEERFAKILRKWARS 552 ++ + + ++ + + I + A+++ Sbjct: 532 LDEESAAKYEVFIEELDREINNSPAEMARMIELLLSE 568 >gi|296274027|ref|YP_003656658.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299] gi|296098201|gb|ADG94151.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299] Length = 580 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 111/586 (18%), Positives = 232/586 (39%), Gaps = 44/586 (7%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLYV---KLEVSDVN 61 + Q K +L + ++ + ++L + + N + Y L + V Sbjct: 1 MDQLLKFVNNLNSAQRAVIIGGFSLLLVLLLGLLIYSNVKAEDSKLNYTIATNLTKNQVM 60 Query: 62 RISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 S L + I F + +G+S+++ +S + A+I L ++S + G+E+F+K +S Sbjct: 61 LASNELEASGILFSVVGSGNSLTLKTSKEFINIAKIKLVTSD-AATSKHVGWEIFEK-SS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T+F ++ +RALEGE++R+++S+SGI+ A V + +P F + PTAS ++ Sbjct: 119 LGTTNFENKVKYLRALEGELSRSLESLSGILRASVKLAIPKETIFTERKTPPTASAVLTL 178 Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQ 235 K + I++ +A+A+PNL ++ ++D G +L + E + + Sbjct: 179 KPGVYLTQKQIDGIKNFIASAIPNLTTNNIKLIDQDGSILEQSKEEADNLSSVTQNKYKK 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ + E I L F+G + V LN + +E +Y+P+ RS + ++ Sbjct: 239 RLEKDFESKIVDLLEPFVGKGRVVARVSLSLNFSKKHTQEEIYEPEGT-IRSQQTTESTS 297 Query: 296 RSET--SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI-ATTHDNY 352 S+ + V+ N+ S +N K NYEI+ + I + Sbjct: 298 SSDGVVKDTAAVPGVQSNIQAPQPEGNKGTNSSKNETSKN-IVNYEISKRVIDHEDKNYS 356 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + +++ AV + L + D ++ I ++V G + +RGD IT+ Sbjct: 357 TINKITAAVTFDSAAL-------TNVQNKDEFINNIVEVVQDTIGYDEKRGDKITVKDFK 409 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALV--------FLVGTLLVTFLGLHALRR-- 462 F+ + + + S ++ A++ +L+ +L+ + + Sbjct: 410 FVTYDNKANLDANGNPIVEDSGDTIGMVKAILAEFSEYFQYLIALILLFIFYRKFIVKND 469 Query: 463 --LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ---- 516 + + G VT D LDS+ + S R+ Sbjct: 470 VVILSDGLTSSGTGKAGGGKGKDINIPGVTDDTKLEDEFNLDSAKGRLKSKVRSQILNNL 529 Query: 517 ---SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559 ++ + + +I AK++ + +Y Sbjct: 530 EGLDEESAAKYEVLIEEIDRIINNEPAEMAKMIELLLSEDTGKKYN 575 >gi|326204626|ref|ZP_08194482.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782] gi|325985193|gb|EGD46033.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782] Length = 524 Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 97/561 (17%), Positives = 194/561 (34%), Gaps = 52/561 (9%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L LL F+K +TRI I+ +++V + + + P Y + +V Sbjct: 8 LLKPLLDFWKGLDKSQKTRIFIITGIVVVSVSIGLFLI---TRPTYTTVINNASTEEVAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 + L E I ++++++ S I V +A LA G + + Sbjct: 65 MQKILKEKGISYKLTEDKSGIIVNEKDSDEAHFELAT-GYSKNGLT--FADALSNIKINT 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIRAI 180 T ++ + E +IAR + I A V IV P+ ASV+I Sbjct: 122 TESDKKHIWQQLDESDIARQLMHFQNIENADVTIVRPEKTLLIDDNNSKDAKASVVITPK 181 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239 + K AE+I +VA++V LD +VTV+D+ G +L T + + + ++ Sbjct: 182 DEISAKQAESIVKIVASSVEGLDPKNVTVVDNKGNVLNTDSGDGIEKTSTQYDMKKKYKN 241 Query: 240 EIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERS-IRLSKDAQR 296 ++E N+ + L L D + V L+ DT +P+ + + + Sbjct: 242 DLEKNVKEVLVGQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAITSRQETKEN 301 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK--L 354 + V N P + S ++ +K + N++ N + + + Sbjct: 302 LKNGDTGGTPGVNSN-PGTTPSYPAGSDSSKSYNKSDVTENFQYNETNKQSEKSLGELIP 360 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 E+ S A+ + G + D + ++ + S ATGI I ++ + Sbjct: 361 EKSSAAITLLYGNRVADDSK-----LNDEMITQVKNLTSRATGIPVEN---IAVSKLKIQ 412 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + T I S ++ + + + Sbjct: 413 PPVVEKPSTADTLKSLISSYGLLALLALMAIAFVIIAL---------------------- 450 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 P + +D+ AL SS + I++ + ++ Sbjct: 451 -------PKKSKQKLEPAFAIDDDTALTSSKFAYSDMRPDPVPEIDTEERSEVKKQIDKF 503 Query: 535 IEINEERFAKILRKWARSEIE 555 ++ + A++LR W + E Sbjct: 504 VKQKPDAVAQLLRNWLTDDYE 524 >gi|254973912|ref|ZP_05270384.1| flagellar MS-ring protein [Clostridium difficile QCD-66c26] gi|255091298|ref|ZP_05320776.1| flagellar MS-ring protein [Clostridium difficile CIP 107932] gi|255312956|ref|ZP_05354539.1| flagellar MS-ring protein [Clostridium difficile QCD-76w55] gi|255515715|ref|ZP_05383391.1| flagellar MS-ring protein [Clostridium difficile QCD-97b34] gi|255648809|ref|ZP_05395711.1| flagellar MS-ring protein [Clostridium difficile QCD-37x79] gi|260682028|ref|YP_003213313.1| flagellar MS-ring protein [Clostridium difficile CD196] gi|260685626|ref|YP_003216759.1| flagellar MS-ring protein [Clostridium difficile R20291] gi|306518924|ref|ZP_07405271.1| flagellar MS-ring protein [Clostridium difficile QCD-32g58] gi|260208191|emb|CBA60528.1| flagellar M-ring protein [Clostridium difficile CD196] gi|260211642|emb|CBE01895.1| flagellar M-ring protein [Clostridium difficile R20291] Length = 516 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 107/565 (18%), Positives = 199/565 (35%), Gaps = 72/565 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +Q+ + +SL + + L ++ + + + Y L+ +L+V D Sbjct: 9 IKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAAD 68 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 IS L ID ++ GS+I VP + V K R+ LA + + G+ L D +S GL Sbjct: 69 ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180 T +I + R ++GEI +TI+S + RVHI + F K +A+V M++ Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAIPGSAAVYLMLKPG 183 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------ANEMERNIL------ 227 +++ L++ +V N+ +V V+D+ LL+ + Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPTNSLINV 243 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD KV Sbjct: 244 DKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 SK++ +S T+ + + D +E YE T Sbjct: 303 ETRSKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +L RL+ +V ++ A++ IV+ A G++ RGDT++ Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + SM F + Sbjct: 402 VVSMVFDPEGKAEAKQELEEIKKEG------------------------------FKKNI 431 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 V + + + + S R + Sbjct: 432 IKAVIGVVAVVAIGAIGYLIYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491 Query: 528 DLRLLHMIEINEERFAKILRKWARS 552 + + E ++ +I++ W Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|315186389|gb|EFU20149.1| flagellar M-ring protein FliF [Spirochaeta thermophila DSM 6578] Length = 569 Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 102/597 (17%), Positives = 203/597 (34%), Gaps = 72/597 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LE 56 M + + L + + + +I S+++V + + +P L K + Sbjct: 1 MNEWLKNVLERVKNAWGKWSLVQKIIFISIVVVLVGSLVFLASLSGAPSMVPLLNKAITD 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115 + I+ L E N+ ++++ + + I V + R L + L ++ +ELFD Sbjct: 61 PQVLEDITTRLEEENVPYQVTAD-NRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + + +T F + + RA+ + ++++ I A V +V+P+ F + P+AS+ Sbjct: 119 -IERWTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASI 177 Query: 176 MIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226 +I S S E I LV AV LD +T+ D G +L E + Sbjct: 178 IIVPKPGSDITSNRKKIEGIVKLVQFAVEGLDPDYITITDQRGVVLNDFEGMEQFDRLEL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 + L Q +++E + I AL D + EL+M +++ + P Sbjct: 238 ARRQLKTKQELENEYKKRILSALGTVFRSDRVEIVNLDIELDMSDVEVKTEEHFPITMKP 297 Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + S + + PE E P + Sbjct: 298 DNPRTPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKDL---EGLVGK 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR------------SA 376 + N +NT++I D ++++R+S+AV ++ E + Sbjct: 355 YSRNSLIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRT 414 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 D L + +++ A G RGD IT+ + F F R Sbjct: 415 YLPVSDEDLRKAEELIKGAVGYKRERGDLITVQHIQFDRTLQFAEEDAAF----RARRQL 470 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 + + V LLV F+ + R K E + + + Sbjct: 471 ERTVFYSLLGVAALLVAFIIFRLIAREMERRRRLKEEELARQHQAMREAALRSAEEEAAA 530 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + + + ++M + E A+++R W E Sbjct: 531 VEMS------------------VEERARMELQEQAINMAREHPEEVAQLIRTWLMEE 569 >gi|255099415|ref|ZP_05328392.1| flagellar MS-ring protein [Clostridium difficile QCD-63q42] Length = 516 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 108/565 (19%), Positives = 200/565 (35%), Gaps = 72/565 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I +Q+ + +SL + + L ++ + + + Y L+ +L+V D Sbjct: 9 IKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAAD 68 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 IS L ID ++ GS+I VP + V K R+ LA +S + G+ L D +S GL Sbjct: 69 ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTSGSKGFALMDDSSSIGL 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180 T +I + R ++GEI +TI+S + RVHI + F K +A+V M++ Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKPG 183 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------------ANEMERNIL 227 +++ L++ +V N+ +V V+D+ LL+ + Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVNENNQPINSGISV 243 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287 K+ + QA+ ++E +I + L G ++ V A+L+ DT + EI DPD KV Sbjct: 244 DKNKASEQALNKQLEKSILEILEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347 SK++ +S T+ + + D +E YE T Sbjct: 303 ETRSKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354 Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 +L RL+ +V ++ A++ IV+ A G++ RGDT++ Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401 Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + SM F + Sbjct: 402 VVSMVFDPEGKKEAKQELEEIKKEG------------------------------FKKNI 431 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 V + + + + S R + Sbjct: 432 IKAVIGVVAVVAIGAIGYLIYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491 Query: 528 DLRLLHMIEINEERFAKILRKWARS 552 + + E ++ +I++ W Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516 >gi|327441055|dbj|BAK17420.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Solibacillus silvestris StLB046] Length = 531 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 90/557 (16%), Positives = 190/557 (34%), Gaps = 56/557 (10%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 S + + L + I + A +F L+ ++ ++V RI+ L+ + Sbjct: 15 FWQSRTKNQKGALIGAFVAVIAIAAAITYFSTRTTMAQLFPEMSQAEVGRITEVLASQGV 74 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 + +++ G+ I VP + V ++ LAAQG P S F FG+T + + Sbjct: 75 KYEVTNGGTVILVPENQVQDLQVSLAAQGYPDSG-EIDTSFFTSNAGFGMTDNEFNVIKQ 133 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIR--AINPSVYKSAE 189 +E ++A ++ G+ A V I +P+ G F K A++++ + + Sbjct: 134 ATIETDLANLVRKFEGVKDASVMITLPEEGVFLKDAKGEAQAAIVLDTAPGHKFSDDQIK 193 Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMN 244 + +LV+ ++PNL ++T+++ + + + + + + + I+ +++ Sbjct: 194 GLFNLVSMSIPNLPKENITIMNQYSEYYDLASAENGDGGIDSVTGQMEVKKTIERDLQRQ 253 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSET 299 + + L +G D V A+++ + E + P +E S + + Sbjct: 254 VQQMLGTLIGPDKVVVNVSADIDFKKENREENLVRPVDEENMEGIEISAQRITETYSGGA 313 Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 + T ++ V + ++ EE N ++N YK+ L I Sbjct: 314 AGAAEGTTEAGSVTDNFVDYVEGTNGDGDYERVEETINNDVNRIRREIQESPYKIRNLGI 373 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV---SAATGINSRRGDTITITSMDFLEN 416 V+V+ E + + + +A + + I ++ F N Sbjct: 374 QVMVDPPNTEEGFDQGVRTDIEQILSTIVRTSIDQEAAGNLTDEDIANRIVVSVQQFQGN 433 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 V + + + +V +L+ L A RR Sbjct: 434 DTAEDQPQSVIPWWVW-------VIGGILVVAIILLVINFLRARRRK------------- 473 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 D L Q S + +L M + Sbjct: 474 -------------------QDEEELGILEQQQQLIEIEDISEEKETEATVRRKQLEKMAK 514 Query: 537 INEERFAKILRKWARSE 553 E FAK+LR W + Sbjct: 515 DKPEDFAKLLRSWIAED 531 >gi|323490142|ref|ZP_08095362.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2] gi|323396190|gb|EGA89016.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2] Length = 546 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 98/569 (17%), Positives = 205/569 (36%), Gaps = 55/569 (9%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + +S TS + + +++ FF N ++ LY L ++ I A+ Sbjct: 10 SKMSESWTSFSPVTKWSVIGSFFLTLIILGVFVFFSNQSNFSVLYSDLTPAEAGEIKTAI 69 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 I +S +G +ISVP + ++ LAA+G+P + N Y F + G+T Sbjct: 70 EAQAIPVEVSSDGKTISVPEEHLANLKVSLAAEGIPKNG-NVNYGTFSENMGLGMTDRHF 128 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN---PSV 184 ++ A++ E+A I+ I G+ A V I +P + + + + ++ + Sbjct: 129 DVVERDAMQNELAYLIKQIDGVTEANVMITLPKENIWITDEEQTSTASIVVKGDSTLQLD 188 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQH 239 K + HL++ +VP+L + ++D G++ + + + I + I+ Sbjct: 189 QKQINGLYHLISKSVPSLPADQIVIMDQNGQVFEVQDENQLDTNLSVYQQHREIQKGIEQ 248 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDA 294 +I+ + + L LG D +V+ ++ ++ E + +P + ++ S+ + Sbjct: 249 DIQRELQQMLGLLLGQDKVVVSVMTNIDFTKEKREEQLVEPVDVENNKGLDISVERIIET 308 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 SE E A + S +++ EE+ N E+N + Y + Sbjct: 309 YSSEGVVIEDAAGTGETEVANYPGVDGTGNS--ESERTEERINSEVNRINRQIEMSPYVI 366 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN----------SRRGD 404 + ++I V V + +I+ ++ A + D Sbjct: 367 DDITINVGVEPPIPDNP------ASLSQENITDISNLLKNAVSTSLSMNEVQATEIELED 420 Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464 I++ + +F +V+F+ + + VI A + LV ++V Sbjct: 421 RISVFATEFQGRPDIVEEEPEVTFLTGIPNNLLMVIGAAIVLVMIIVV------------ 468 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 + + AL SNQ S +S S Sbjct: 469 ----------ALLLLRKKKKVDVEEEEYSFEGFEQALAKSNQVEIEEEEIDLSEFSSR-S 517 Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + E F K+LR W + Sbjct: 518 NPKRKTIEKLAKGRPEDFTKLLRSWMADD 546 >gi|24215291|ref|NP_712772.1| flagellar MS-ring protein [Leptospira interrogans serovar Lai str. 56601] gi|24196388|gb|AAN49790.1|AE011426_5 flagellar MS-ring protein [Leptospira interrogans serovar Lai str. 56601] Length = 565 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 109/590 (18%), Positives = 215/590 (36%), Gaps = 65/590 (11%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + L + T+L T+ LIL V L ++ + L+ L D Sbjct: 4 QLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L + S + S I+V + LA + L + G+ELF V+ F Sbjct: 64 EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180 Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237 K + I +LV+ AVP L +V+V D+ GK+++ E + L IVQ Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240 Query: 238 ----QHEIEM--NINKALAAFLG---------------------VDNFRSAVVAELNMDT 270 + I+ ++ L LG DN S VVA + Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 E+ ++ S + +K+ + P+ E N+ Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPG---YKDTDYQKAEYS 357 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385 K E +NYE N + +K+E+++++VV++ + + L Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I K + +A GI+ RGD I++ ++ + F S ++ + + + ++ Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIILL 477 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 L+ ++LV + R ++ + + + + + Sbjct: 478 LIVSILVYRAIKKEIARRRLREEELAAQQQMMREAALRVMDESGAEVELS---------- 527 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ ++ +++ E A++LR W E Sbjct: 528 -------------LDEKYRRELLENAINLAREKPEEVAQLLRTWLSEEEA 564 >gi|307718598|ref|YP_003874130.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192] gi|306532323|gb|ADN01857.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192] Length = 569 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 103/597 (17%), Positives = 206/597 (34%), Gaps = 72/597 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LE 56 M + + L + + + +I S+++V + + +P L K + Sbjct: 1 MNEWLKNVLERVKNAWGKWSLVQKIIFISIVMVLVGSLVFLASLSGAPSMVPLLNKAITD 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115 + I+ L E N+ ++++ + + I V + R L + L ++ +ELFD Sbjct: 61 PQVLEDITTRLEEENVPYQVTAD-NRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + + +T F + + RA+ + ++++ I A V +V+P+ F + P+AS+ Sbjct: 119 -IERWTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASI 177 Query: 176 MIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226 +I S S E I LV AV LD ++T+ D G +L E + Sbjct: 178 IIVPKPGSDITSNRKKIEGIVKLVQFAVEGLDPENITITDQRGVVLNDFEGMEQFDRLEL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 + L Q +++E + I ALA D + EL+M +++ + P Sbjct: 238 ARRQLKTKQELENEYKKRILSALATVFRPDRVEIVNLDIELDMSDVEVKTEEHFPITMKP 297 Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + S + + PE E P + Sbjct: 298 DNPRTPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKDL---EGLVGK 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR------------SA 376 + N +NT++I D ++++R+S+AV ++ E + Sbjct: 355 YSRNSVIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRT 414 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 D + + +++ AA G RGD IT+ + F F R Sbjct: 415 YLPVSDEDIRKAEELIKAAVGYKRERGDLITVQHIQFDRTLQFAEEDAAF----RARRQL 470 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 + + V LLV F+ + R K E + + + Sbjct: 471 ERTVFYSLLGVAALLVAFIIFRLIAREMERRRRLKEEELARQHQAMREAALRSAEEEAAA 530 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + + + ++M + E A+++R W E Sbjct: 531 VEMS------------------VEERARMELQEQAINMAREHPEEVAQLIRTWLMEE 569 >gi|310659045|ref|YP_003936766.1| flagellar m-ring protein flif [Clostridium sticklandii DSM 519] gi|308825823|emb|CBH21861.1| Flagellar M-ring protein FliF [Clostridium sticklandii] Length = 521 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 112/567 (19%), Positives = 216/567 (38%), Gaps = 60/567 (10%) Query: 1 MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M + + + + ++L + + +++ A F+ P+Y LY +++ Sbjct: 1 MDFFNDIKDKTGKLSEKYSNKQKIMLGGLAVGLVVITTAMIFYFTRPNYVTLYRDIDLKT 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + ++ L E I +R++ + +SISVP + + KA++ LA GLP ++ + Y NS Sbjct: 61 ASEVTSQLDELKIPYRLNQD-NSISVPDTYINKAKVDLAGAGLPEATFD--YNDLINRNS 117 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMI 177 ++ + R AL+ EIA IQSI G+ A V++ +P F ++ ASV + Sbjct: 118 MFMSDDEKNQARNYALQNEIANVIQSIPGVKKAFVNLSIPKTQEFILQENKIDAKASVFL 177 Query: 178 RAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLS 232 + + I LVA +V L +VTV G++L + + N + +L Sbjct: 178 NLDDKISLDQTSIQGITMLVANSVEGLKPENVTVHGPNGQVLNEDSTDTNNILVSQTNLE 237 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVER 286 + ++ ++E ++N LA G N +LN DT + + P D V Sbjct: 238 LQNKVKLDVEKSLNNFLAPIYGYGNVSVMASVKLNFDTDNTQSKSFAPPIEGETDGLVRS 297 Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 + + S+ + V V + N DK E NYE+N Sbjct: 298 LQENIEKVENSQEAVGNPGVDANAEEEVVDYATLDPNALNSNYDKNERIVNYELNEIVKT 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 ++E L++AVV+NK L + EI +++AATG+ ++ ++ Sbjct: 358 VEKAKGQIENLTVAVVLNKDSLEG-------GELTEEQRTEIASLINAATGLETK---SV 407 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 I + F ++ +Q + D + + + F V L+ + Sbjct: 408 EIYAQSFNQD-------IQNALSDTAGQEGIPIWMWIAFAVIALIPILAIGIYMIMKRRK 460 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + K+ E + +AV + Sbjct: 461 EKKKEAEKLLEIPQESAISKAAVEQIELE--------------------------IKESG 494 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 + +I+ N E ++L+ W + Sbjct: 495 RKKSIESLIDTNPEIVTQLLKTWLDED 521 >gi|315636314|ref|ZP_07891564.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22] gi|315479403|gb|EFU70086.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22] Length = 574 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 106/577 (18%), Positives = 222/577 (38%), Gaps = 40/577 (6%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLY---VKLEVSDVN 61 + Q K +L +++ +IL S + ++ + + + + Y L +DV Sbjct: 1 MDQLLKFINNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNYTIASNLTQADVM 60 Query: 62 RISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 R S L + I F +S +G+++++ +S + A+I L +++ + G+E+F+K +S Sbjct: 61 RASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFEK-SS 118 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T+F ++ +RALEGE++R+++S+SG++ A V I +P F + A TAS +I Sbjct: 119 LGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASAVISL 178 Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQ 235 K + I++ +A+AVP+L ++ ++D G LL N E N Sbjct: 179 KQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQNKYKD 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 I+ + E I L + + V L+ + + E +Y P+ + + Sbjct: 239 KIEKDYEAKIISLLEPVVETGRVVAKVNVALDFVKKDVEEEIYSPEGSIRSQQVIENTNN 298 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-L 354 V N V + N++ +NYEI+ K I+ NY + Sbjct: 299 TQGMLPNNGGVAGVDNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKDGNYTNI 358 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +R++ +V + L + ++A + + A G + RGDTIT+ F+ Sbjct: 359 KRITASVTFDSAVLKD-------HPDKGEFIASLESLSGDAIGYDRGRGDTITVKDFKFV 411 Query: 415 ENQLFNSGTVQVSFM----------------DILSRHFATVINALVFLVGTLLVTFLGLH 458 + N V + + + +L+ +L+ Sbjct: 412 GAKALNENGQLVDEFGNVINSGDGISVVGTMSTIKSILQDYKDYIQYLIVGILLFVFYKK 471 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + + + ++ + A + S N Sbjct: 472 FIASSDIVILGDGNKKKLEADDDDIVKEMLTNYESEFDTATAQGRLKSKVKSQILNNIEG 531 Query: 519 INSYVSKQSDLRLLHM---IEINEERFAKILRKWARS 552 ++ + + ++ + + I + A+++ Sbjct: 532 LDEESAAKYEVFIEELDREINNSPAEMARMIELLLSE 568 >gi|167465322|ref|ZP_02330411.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 425 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 81/419 (19%), Positives = 184/419 (43%), Gaps = 20/419 (4%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + +++ Q++ + + + L + + I+ + ++ Y + L+ + Sbjct: 1 MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 I L + I +++S +G SI VP++ V + +I + ++GL N GY +FD+ Sbjct: 61 AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNK-GGNVGYGIFDQSG 119 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMI 177 SFG T E+ ++ A++GE+ + I S I ++V I +P+ G F + +ASV++ Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179 Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKS 230 + + I +LV+ +V NL + ++T+ D G+ + + + Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSKVE 285 + + + +++ NI LA G + VV+ +N D ++ +E + D +E Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 S++ + + S+ + N V + +++ ++ NYE+N + Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTN--DVPGYESTSNSGNSKSEENQKTVNYEVNRITN 357 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404 Y ++ L+I V ++ + G+ + +++ + I K A +G+ + D Sbjct: 358 DIIRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416 >gi|45657269|ref|YP_001355.1| flagellar MS-ring protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600507|gb|AAS69992.1| FliF [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 566 Score = 234 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 115/590 (19%), Positives = 218/590 (36%), Gaps = 64/590 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + L + T+L T+ LIL V L ++ + L+ L D Sbjct: 4 QLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L + S + S I+V + LA + L + G+ELF V+ F Sbjct: 64 EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T F ++I + RAL+G I +++ ++ + A V+I P+ F + ASV++ I Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180 Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237 K + I +LV+ AVP L +V+V D+ GK+++ E + L IVQ Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240 Query: 238 ----QHEIEM--NINKALAAFLG---------------------VDNFRSAVVAELNMDT 270 + I+ ++ L LG DN S VVA + Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300 Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 E+ ++ S + +K+ + P+ E N+ Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPG---YKDTDYQKAEYS 357 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385 K E +NYE N + +K+E+++++VV++ + + L Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 +I K + +A GI+ RGD I++ ++ + F S ++ + + +I A + Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQ----MIIASLI 473 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 ++ L+V+ L A+++ + E + V ++LD Sbjct: 474 IILLLIVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDE-- 531 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ +++ E A++LR W E Sbjct: 532 ----------------KYRRELLENAINLAREKPEEVAQLLRTWLSEEEA 565 >gi|325273535|ref|ZP_08139767.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] gi|324101328|gb|EGB98942.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] Length = 424 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 77/442 (17%), Positives = 160/442 (36%), Gaps = 57/442 (12%) Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209 ARVH+ +P F + +P+ASV++ + AI +LVA +VP LD VTV Sbjct: 1 ARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPGQVMAIVNLVATSVPELDKSQVTV 60 Query: 210 LDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 +D G LL+ + GK + ++ + ++ L LG D +++ V A+L+ Sbjct: 61 VDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 120 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL- 326 + ++PD RS + + + S + P+ N P + Sbjct: 121 FSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGVPGALSNQPPGAATAPQTTGGAA 179 Query: 327 ---------------------------------ENTDKKEEQSNYEINTKSIATTHDNYK 353 + +++ N+E++ T + Sbjct: 180 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 239 Query: 354 LERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + RLS+AVVV+ + G + LA ++V A G ++ RGD++T+ ++ Sbjct: 240 MTRLSVAVVVDDQVKIDPATGDATRAPWGSEDLARFTRLVQDAVGFDASRGDSVTVINVP 299 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + F ++ ++ +V L++ F L + + Sbjct: 300 FAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFILVLVFGVLRPVLNNITGGGKQAA 355 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 G + ND ++L + S + + Sbjct: 356 -----PDSDMELGGMMGLDGELANDRVSLGGPTSILLPSP--------SEGYEAQLNAIK 402 Query: 533 HMIEINEERFAKILRKWARSEI 554 ++ + R A+++++W ++ Sbjct: 403 GLVAEDPGRVAQVVKEWINADE 424 >gi|296282266|ref|ZP_06860264.1| flagellar M-ring protein FliF [Citromicrobium bathyomarinum JL354] Length = 526 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 100/561 (17%), Positives = 193/561 (34%), Gaps = 57/561 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + Q ++ + + + V + + + + LY L+ + Sbjct: 6 MNGQGNMGQRARAFAAQPVVKKALPWFVGMAGLGIAALLWATLAPGPQRVLYSSLDDASR 65 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 + L +A ID++I++N ++SV S + +AR+ +A+ G S ++ + Sbjct: 66 ASVVATLDQAGIDYQINNNTGALSVSESDLYRARMVVASNG--SIAAPETGAQMIENLPL 123 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178 G + ++ A E E+ T+Q I G+ + RVHI + F + P+AS+M+R Sbjct: 124 GASRTLEGDRLRAAQERELMLTVQEIDGVESVRVHIAKAERSVFVRENVAPSASIMVRMA 183 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 AI +LVA +VP L V V+D GKLLT + L + ++ Sbjct: 184 PGRELADSQVSAIVNLVAGSVPGLSPDAVRVVDQHGKLLTDKREG--AGNERLDLQTQME 241 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++ +++ L+ +G D F S V EL+M+ YD D R + + Sbjct: 242 AKLTAQVDQLLSPMIGADAFSSQVQVELDMNEVTSARESYDKDGA---IRRETTQQSSTS 298 Query: 299 TSQPESAVTVEQNMPHV-------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 + N P + + P + YE+ + + Sbjct: 299 QAPAAGIPGATANTPPADPQLADRAPQDTPPADGAQTMGDTSASRTYELGREVSVSNLTP 358 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 L+R+S+AV ++K + + + +I ++VSAA G RGD +T+ Sbjct: 359 GALKRVSVAVAIDKNAMANA---------NAADIKKIEELVSAAVGAQDARGDKVTVMIR 409 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F E + + + ++ R+ Sbjct: 410 PFTEAVVDKPAFYETGWFAMVVRN--------------------------------AVAL 437 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 V +L+ P + D D+ + S + Sbjct: 438 LAVLLVLLLAVRPALKMLKGKGAKGDKAGADAGGAHDAAQIMLPASGFDREDLDAQIQLA 497 Query: 532 LHMIEINEERFAKILRKWARS 552 + + LR+ Sbjct: 498 QRIAREQPDDAVLALRRMLAE 518 >gi|289805827|ref|ZP_06536456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 410 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 84/433 (19%), Positives = 155/433 (35%), Gaps = 50/433 (11%) Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDV 207 +ARVH+ MP F + P+ASV + A+ HLV++AV L G+V Sbjct: 1 KSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNV 60 Query: 208 TVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266 T++D +G LLT + R++ L ++ I+ I L+ +G N + V A+L Sbjct: 61 TLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQL 120 Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP---------- 313 + ++ E Y P+ ++ S+ SE P N P Sbjct: 121 DFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIAT 180 Query: 314 -----------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + + ++ E SNYE++ T + +ERLS+AVV Sbjct: 181 PPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVV 240 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 VN L + + +I + A G + +RGDT+ + + F Sbjct: 241 VNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGE 296 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 ++ A +L+ ++ L A+ + ++ + Sbjct: 297 LP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR- 351 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + ++D R R+ + V Q R+ M + + Sbjct: 352 -----------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVV 397 Query: 543 AKILRKWARSEIE 555 A ++R+W ++ E Sbjct: 398 ALVIRQWMSNDHE 410 >gi|229826302|ref|ZP_04452371.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC 49176] gi|229789172|gb|EEP25286.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC 49176] Length = 536 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 79/574 (13%), Positives = 175/574 (30%), Gaps = 59/574 (10%) Query: 1 MA-ILDQLL----QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL 55 M L++L +F + + +++ +V + + + +FV P L Sbjct: 1 MNTFLERLRKIPARFLEFWNKYSPVQRILMIAVGVGVFLAIILVSYFVTRPVMTTLVKAE 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 + S+ +I L + I + +S + +ISV A + LA +PS + ELF Sbjct: 61 KTSETAKIKDLLDDNGISYELSSDALTISVDQKDYSNALLVLAKNDIPSIGMSID-ELF- 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTAS 174 N F T +++ + + + + ++ I A V I P + + S Sbjct: 119 -NNGFSTTESEKKLKANIYKQDWLRQVLLNMDNIENAVVSITSPTTGNTLFAETKDTSVS 177 Query: 175 VMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSL 231 V++ + ++A+ I +++A AV N +T+ D +G LL G Sbjct: 178 VILTVSSDFKQENAKTIANILAGAVGNDSTKAITIADQSGNLLFNGADNDVFSGGINSIS 237 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + + + I K L D+ + A +M+ Y P + E+ ++ Sbjct: 238 DYEKNVTGVKKEEIYKLLVGLPAYDDAKVAANFIFDMNKISSVYTEYTPPTGAEQGLKSH 297 Query: 292 KDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + ++ S + N + + + + Y N K T Sbjct: 298 DYSYEAQNSNANGGTPGTDANSETDYMVQSGGNAQGNVSINEND---YLPNKKVTNTEAA 354 Query: 351 NYKLERLSIAVVVNKGRLTEVLGR----------SADQGKIDSYLAEINKIVSAATGINS 400 ++ ++ + + + + A V Sbjct: 355 MGAIKPNESSIAITLISYVNYNETEMKKNGRLEGTTFDEFMFANQAATELTVPENVITLV 414 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 R + ++ L Q+ + + ++ ++ L+ F+ L Sbjct: 415 SRATGVPEENIQILAWQMPIFQPEEGGGFFTFTNILM----IMLAVLIVALLIFVVFRGL 470 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + + L + I Sbjct: 471 APV-----------------------------EVVELEPELSVEQLLATTKENQSLDDIE 501 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ + ++ N E A++LR W E Sbjct: 502 FSDKSETRKMIEKFVDENPEATAQLLRNWLSDEW 535 >gi|83646781|ref|YP_435216.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] gi|83634824|gb|ABC30791.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396] Length = 462 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 80/402 (19%), Positives = 158/402 (39%), Gaps = 34/402 (8%) Query: 13 SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + R + L+ + +A + S +Y LY L+ +++ L+E I Sbjct: 4 FWSEWSGGRRVTFVLAALIVVGAGVALYMMLTSHNYQVLYKDLDTEQAAKLTEKLNELKI 63 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 +++ GS + V + A++ LA+ G + G+ELFD+ + +G+T F Q+I Sbjct: 64 PYQLGAQGSQVLVSQDDLYNAKLKLASSGYALNGG-VGFELFDEAD-YGMTEFAQKINYQ 121 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAINPSVYKSAEA 190 RAL+GE+ARTI + I ARVH+V+P+ F+K + + ++++ Sbjct: 122 RALQGELARTIMAFDEIKFARVHLVLPESSLFKKDNKQPKASVTIVMEDGKYLSLDQING 181 Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKAL 249 I++LVAA+V L VT+L+ G LT E L +++ ++ I L Sbjct: 182 IQNLVAASVEGLKPETVTLLNHKGVALTQVETGDQATVSAQLKGKSSMEAFLQQKIVVIL 241 Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309 V LN + P + + + Sbjct: 242 NQIFDEGTTAVRVDVALNHKRVERVRETLVPFG----------------DTDKGAVIKSS 285 Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 N + + + ++ Y + + ++ER++++VV+ Sbjct: 286 ANRQYELPDQDGRKKPSSVISSDVKEEEYAYGKQVETLSDAGGEVERITVSVVI------ 339 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + I ++++A G++ RGD + + +M Sbjct: 340 -------PANASGEQIEVIKSLIASAIGLDFERGDLVNVAAM 374 >gi|51894139|ref|YP_076830.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum IAM 14863] gi|51857828|dbj|BAD41986.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum IAM 14863] Length = 576 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 106/589 (17%), Positives = 221/589 (37%), Gaps = 61/589 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 ++ ++ Q + + R L +LV + L +A ++N P ++ Y + S+V+ Sbjct: 7 DVMGRVKQIWGGMSRPVRW----LTVGLLVALALSLAVAVYLNRPRWEVFYKASDPSEVS 62 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L E + R++ NG I VP+ A + A GLPSS G E+F + FG Sbjct: 63 TLVAHLDELGVPSRVTGNGLVIEVPARERSAANLAKAQAGLPSSGH-VGLEIFAQ-PQFG 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179 T F +++ RA+EGE++R++ I+ I A+V++ +P+ F + P+A+V+++ Sbjct: 121 ATEFDRQVNYKRAMEGELSRSLMRIADIEYAKVNLNVPEKSVFVRDEEPPSAAVLVQLRS 180 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQ 238 + AI + VA++V L VTV+DS G+ L + + + ++L+ + + Sbjct: 181 GRTLDADNVTAIINFVASSVEGLTPDRVTVIDSQGRELRPADDDAQRLDAEALAFQRQRE 240 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 ++ + + L G N ++V EL+ + + E + V S + Sbjct: 241 EQLTQKLLQVLEPIFGRGNVAASVTVELDHQSSRTEERIVGQGVPVATVSERSGSQTQGT 300 Query: 299 TSQPESA----------VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 +++P V + S E+ + E Y++ ++ T Sbjct: 301 STEPAPVSTQLPGQGETPGVTAPAVPIYQEPSVSTESGESYQSRTETR-YDVGERNQVTV 359 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 ++R+S AV +N+ S + I + ++ATG +T+ Sbjct: 360 SPAGSVKRISAAVTINQ------------DTLTQSEIDLIRQHAASATGAQLS---DVTV 404 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 +M F ++ A + + + LL+ L R Sbjct: 405 LAMSFRPTAQADAAPPAPEAAAGSRLFDARALAIGLGIASFLLILAALLTRRRESEPEFA 464 Query: 469 AKKGEVGGKSILSPPPISSAVT------------------------TGLMPNDNIALDSS 504 G ++ + + T + + Sbjct: 465 LPGHPAVGTALDVALGLDQPLPVQQAAAAEAAPAAPEAPEAAPAEETDVQITGEMTAAEK 524 Query: 505 NQDIFSHSRNLQSRINSYV--SKQSDLRLLHMIEINEERFAKILRKWAR 551 +++ R + I+ + ++E E A+++R W + Sbjct: 525 FEEVMKRRRPPRQPIDPEDFMDDDILADIDVLLEQAPEACAEVIRHWLK 573 >gi|315657517|ref|ZP_07910399.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491989|gb|EFU81598.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 538 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 105/555 (18%), Positives = 207/555 (37%), Gaps = 31/555 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I++ + + + + + + V I+ + +V SP Y LY L D Sbjct: 5 IVNAVDKVKNTVGQFSLGQKTLSIIGVAVLILGGVVLYSWVASPDYTTLYSGLTDKDQAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L I ++++DNG + VP+ V AR+ LAA LP + SGY + D + Sbjct: 65 VTEQLDSQGIKYQVADNG-VVKVPAKDVQSARMSLAAADLP-AQPTSGYAVLDNL-GVAA 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 + F Q++ + RALEGE+A+TI ++ I + V + +P F + + Sbjct: 122 SDFQQQMAKKRALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPK 181 Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +AI ++VAA+VPNLD VTV+D+ G L+ ++ Sbjct: 182 NRKDVSNDTVQAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EME 235 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297 + + +G N R + +L+ D Q +Y DP+ V+ + Q S Sbjct: 236 KSLVDKALAVVEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYS 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 V N+ + + N + N +N + +T R Sbjct: 296 GGGAVVGGVLGPDNIGNP---YELNGNNGGNYTNTQNVQNNAVNEEVTQSTRAPGAALRK 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S++VV+N+ + +A++ +V+AATGI++ GD + I+ F + Sbjct: 353 SVSVVLNQETARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTA 400 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + G +++ + + A+ + ++ G+ Sbjct: 401 KKAAEKAAADEAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY--VSKQSDLRLLHMI 535 P P + + A + + + + + + Sbjct: 461 LDQLPDPYTLSAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELA 520 Query: 536 EINEERFAKILRKWA 550 + A+ LR W Sbjct: 521 LDKPQLVAEQLRAWM 535 >gi|23099010|ref|NP_692476.1| flagellar MS-ring protein [Oceanobacillus iheyensis HTE831] gi|22777238|dbj|BAC13511.1| flagellar basal-body M-ring protein [Oceanobacillus iheyensis HTE831] Length = 532 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 99/562 (17%), Positives = 198/562 (35%), Gaps = 45/562 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 +L S + + + L+ I+L F + +Y LY L + + Sbjct: 5 LLKGKDSVSSFWASRSKVQKGSVIGGFLLIILLIGVITFASTNTNYVPLYNNLSTQEAGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ L + F + + S+I+VP V + LA+ GLP++ S Y F + S+G+ Sbjct: 65 ITTELESRGVPFELENGRSTITVPEEQVDTLLLDLASMGLPNNGS-IDYSFFSENTSWGI 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIRA 179 T + ++ A++ E+A I+S+ GI A+V I +P+ F A + + + Sbjct: 124 TDNEFNVMKLDAMQTELANLIKSVEGIQDAQVMINVPEEPVFATDVTGEASASIVLNTQP 183 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQA 236 E + HLVA AVPNL ++ +++ + T ++ ++ + Sbjct: 184 GYQFEGNQIEGLHHLVAKAVPNLPEENIVIMNQYFEYFDQNTQQTANQDTYTHQQTVKKE 243 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291 ++ +I+ + + L +G +N +V A+++ + +E + +P + S+ Sbjct: 244 VERDIQRRLQQMLGTMVGNENIVVSVTADIDFTQENRKEELVEPVDIENMEGLPVSLETI 303 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 +++ E + + +E NYE N Sbjct: 304 QESYVGEGAAEAGTNEEVGTGEGDVPGYNSGDNGDGEYELDKETINYEFNRIRRDIVESP 363 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 YKL L I V VN R + Q + S IN I+++ + Sbjct: 364 YKLRDLGIQVAVNNTRSVDNELEYLSQQEQTSVEEGINSILNSIITSSID---------- 413 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 +N V I+ + F + + Sbjct: 414 -----GEYNQDLVPDDKTSIVFQEFTETTTPSAEGTTGIPTWLYVV-------------- 454 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 G +L + + +D + + + +L + S + +L Sbjct: 455 ---AGILLLIIIVLLFFLIRNRKTSDEVVDQYEEINEQTPIPDLPEKEESEAT-IRRKQL 510 Query: 532 LHMIEINEERFAKILRKWARSE 553 + + E FAK+LR W + Sbjct: 511 EKIAKEKPEDFAKLLRSWIGED 532 >gi|296125414|ref|YP_003632666.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563] gi|296017230|gb|ADG70467.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563] Length = 567 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 108/593 (18%), Positives = 215/593 (36%), Gaps = 71/593 (11%) Query: 2 AILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSD 59 +++L Q + + +L V++V + +A + L+ + L D Sbjct: 3 DFINKLTSQIRNIFSKTTTLQKAVLIGVLVVGLGAIIATIMLTSRKTGTLLFQQALTQED 62 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L NI ++ NG + +A + L +G + + G+ELFD Sbjct: 63 ARNVIAVLDANNIRYQYR-NGFITLNNQNDKARAELELVKEGRMPTGVD-GWELFD-APR 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G+T +I + R+L I + + + + A V + P I + TASV+I+A Sbjct: 120 IGITDVELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKA 179 Query: 180 INP-----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGK 229 K+ ++ L+A V L VT+ DSTG +LT E + + Sbjct: 180 QPFKEDVLRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQE 239 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--------- 280 L IV + IE I + L + + + EL D I + P Sbjct: 240 ELKIVDRERKNIENKIRQTLGRIY-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPT 298 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +KV+ S R + + + P+ A E+N+P K ++ K Sbjct: 299 TPYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKSDRWQT---YTKT 355 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGRSA----------DQGK 380 + Q NYE++ + A +Y++ ++S AV ++ + +V G Sbjct: 356 DSQDNYELSKRYEAIKKGSYQIGKISAAVALDGRWTKVYDVNGDPVITNGNSYVREYHPV 415 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + + +V AA G + +RGD +++T + F FN+ ++ + R + Sbjct: 416 TTEEIRNVTSLVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKL----MRDRFIKKTL 471 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 + + L V L + A+++ + E + + + Sbjct: 472 IITMISLLILFVLALVIRAIQKELARRRRLREEELERKQMEMRRQAMM------------ 519 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + K+ ++ + + A++LR W + Sbjct: 520 -------NANEEPISEMSLEDAARKKLMDEVIRVSHERPDDVAQLLRTWMADD 565 >gi|171321207|ref|ZP_02910177.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] gi|171093517|gb|EDT38687.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5] Length = 495 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 93/423 (21%), Positives = 167/423 (39%), Gaps = 35/423 (8%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + + R R LA + + A + P Y L L+ D Sbjct: 1 MKRSISRLGAYFLAGSRARQFALAGTLTAVVGCAGLAAWLALRPSYQILARDLKPQDAAA 60 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L + I FR ++ ++I VP++ AR+ L + L +G+ELF++ + FGL Sbjct: 61 VAAQLDKEKIPFRYDESTAAILVPANDARAARVRLTSADL-RLQGVAGFELFNQSD-FGL 118 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAI 180 T F Q++ RAL+GE+ARTI ++ I ARVH+ +P+ FR+ + + ++ +R Sbjct: 119 TEFAQKVNYQRALQGELARTIATLDAIELARVHLSLPEASLFRRDRGRPKASVALFVRDG 178 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240 + + I+ LVAAAVP + DV+VL+ +G +A+ ++ ++ A++ Sbjct: 179 HALEPDVVKGIQRLVAAAVPEMSAADVSVLNQSGA--SADARGADVDDPKFALKNAVEQR 236 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 E I +A G +V A L+ D + + Sbjct: 237 YEHKILAQIAPIAGAGRATVSVDASLDFDQIRTTRE-------------SGLTQSAANPG 283 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 P A T + PLP + + E + + +LS+ Sbjct: 284 NPPGAPTHSATAGWPNAGLPPLPGARTAPIEPETARS---ERSVEQIVRSPGAIRKLSVG 340 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420 +V++ + IVSA+ G + RGDT+ I + D Sbjct: 341 IVLDD-------------TMTPERATRLRDIVSASIGFDPARGDTLAIYTPDAAPAPQNG 387 Query: 421 SGT 423 Sbjct: 388 QAA 390 >gi|298345990|ref|YP_003718677.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063] gi|304390252|ref|ZP_07372206.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236051|gb|ADI67183.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063] gi|304326734|gb|EFL93978.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 538 Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats. Identities = 103/555 (18%), Positives = 206/555 (37%), Gaps = 31/555 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I++ + + + + + + V I+ + +V SP Y LY L D Sbjct: 5 IVNAVDKVKNTVGQFSLGQKTLSIIGVAVLILGGVVLYSWVASPDYTTLYSGLTDKDQAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L I ++++DNG + VP+ V AR+ LAA LP + SGY + D + Sbjct: 65 VTEQLDSQGIKYQVADNG-VVKVPAKDVQSARMSLAAADLP-AQPTSGYAVLDNL-GVAA 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 + F Q++ + RALEGE+A+TI ++ I + V + +P F + + Sbjct: 122 SDFQQQMAKKRALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPK 181 Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +AI ++VAA+VPNLD VTV+D+ G L+ ++ Sbjct: 182 NRKDVSNDTVQAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGAAAAS------EME 235 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRS 297 + + +G N R + +L+ D + + DP+ V+ + Q S Sbjct: 236 KSLVDKALAVVEPLVGAGNARVSAQVDLSQDNQVKTTRVYTDPEGGVKPLSASNAAEQYS 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 V N+ + + N + N +N + +T R Sbjct: 296 GGGAVVGGVLGPDNIGNP---YELNGNNGGNYTNTQNVQNNAVNEEVTQSTRAPGAALRK 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 S++VV+N+ + +A++ +V+AATGI++ GD + I+ F + Sbjct: 353 SVSVVLNQETARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTA 400 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + G +++ + + A+ + ++ G+ Sbjct: 401 KKAAEKAAADEAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY--VSKQSDLRLLHMI 535 P P + + A + + + + + + Sbjct: 461 LDQLPDPYTLSAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELA 520 Query: 536 EINEERFAKILRKWA 550 + A+ LR W Sbjct: 521 LDKPQLVAEQLRAWM 535 >gi|300871679|ref|YP_003786552.1| flagellar M-ring protein FliF [Brachyspira pilosicoli 95/1000] gi|300689380|gb|ADK32051.1| flagellar M-ring FliF protein, FliF [Brachyspira pilosicoli 95/1000] Length = 562 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 110/593 (18%), Positives = 216/593 (36%), Gaps = 72/593 (12%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSD 59 M L + Q + + IL V++V + +A FF + L+ L D Sbjct: 1 MNKL--IGQVKNIFAKTTKVQKAILIGVLVVALGAIVATVFFTSRRAGTLLFQNALTQED 58 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L NI ++ NG + KA + L +G + G+ELFD Sbjct: 59 ARNVIAVLDANNIKYQYR-NGFITLNNEADKAKAELELVKEGRMPMGVD-GWELFD-APR 115 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G+T +I + R+L I + + + + A V + P + + TASV+I+A Sbjct: 116 IGITDAELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDVDSPVTASVVIKA 175 Query: 180 INP-----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGK 229 K+ ++ L+A V L VT+ DSTG +LT E + + Sbjct: 176 QPFKEEILRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQE 235 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--------- 280 L IV + +IE I + L + + + EL D I + P Sbjct: 236 ELKIVDRERKKIENKIRQTLGRIY-TNRVETTIALELIWDDISITNNLVLPIILKEDDPA 294 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 +KV+ S R + + + P+ A E+N+P K ++ K Sbjct: 295 TPYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKTDRWQT---YTKT 351 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGRS----------ADQGK 380 + Q NYE++ + A +Y++ ++S AV ++ + + G + Sbjct: 352 DSQDNYELSKRYEAIKKGSYQIGKISAAVALDGRWTKVYDANGNAIITNGSSYLREYHPV 411 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + + +V AA G + +RGD +++T + F FN+ ++ + + V+ Sbjct: 412 TADEIKNVTALVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKL----LRNNFIKRVL 467 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 + + L + L + ++++ + E + + + Sbjct: 468 IISMIGLLALFILVLIIRSIQKELARRRRLREEELERKQMEMRRQAMM------------ 515 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + K+ ++ + E A++LR W + Sbjct: 516 -------NANEEPMSEINLEDAARKKLMEEVIRVSHERPEDVAQLLRTWMADD 561 >gi|218133660|ref|ZP_03462464.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC 43243] gi|217991035|gb|EEC57041.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC 43243] Length = 542 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 81/573 (14%), Positives = 179/573 (31%), Gaps = 49/573 (8%) Query: 1 MAILDQLLQ-FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M Q+ Q + ++ S + V I+ + VN P Y+ L + Sbjct: 1 MDRFKQIGQKLLDVWNKYTVKQRAVIVSSVAVVIIALVILAVVVNRPQYETLTTCSSYAQ 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + ++ L++ +I + ++DN + V + A++ LA+ + S L S Sbjct: 61 MQEVTNLLTDNSISYNVADNSMVVKVRKEDLTNAKMALASSNIQSDGYTIEDAL---SGS 117 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178 F T ++ + LE + ++S G+ A V + + + + + T V+++ Sbjct: 118 FSTTENDKQKKWQKYLESKFKTDLESFDGVKEASVTVTLGEATNIYYSTKQEATVGVVLQ 177 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--------ERNILGKS 230 + A + L+A +V N ++T++ + G L + L Sbjct: 178 LTKQIDDEVAAGMAQLLATSVGNKTTDNITIISTDGTTLFSKSDTDLSVSGTSTVGLNGR 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIR 289 L I+ I ++ + + A D + ++N D I PD + Sbjct: 238 LKYQSQIESSITSHLRQGMLATGLYDEAYVQMNLDMNWDAVNTINTQYSAPDGMEQGLYS 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 S + S T+ N S + ++ ++ Y N T Sbjct: 298 ESYEEASSGTNGAGGVPGTSSNSGDNSTTYYVSDGTNSTSEYSVKKYAYLPNVLVTTTDS 357 Query: 350 DNYKL--ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 K+ S+ V K + ++ + + + + Sbjct: 358 QPGKVIYNTSSMTVTFVKNVIYNEDECRKRGLLDNTTWDDFKAQNAQSVAAQVDQTWINA 417 Query: 408 ITSMDFLENQLFNSGTVQVSFM-----DILSRHFATVINALVFLVGTLLVTFLGLHALRR 462 I++ ++ Q Q F + R++ + + +V L+ F+ + R Sbjct: 418 ISTGTGIDTQNITVLAYQKPFFVDSEGNAFVRNWTFWLQIALAVVILGLLAFVVFRSARP 477 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 L + + V + + I+ Sbjct: 478 LTVEEKEPELSVEEMLRTT----------------------------KEQQEPLEDIDLQ 509 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + ++ N E A +LR W + Sbjct: 510 EKSEIRKAIEKFVDENPEAVALLLRNWLNDGWD 542 >gi|150388445|ref|YP_001318494.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] gi|149948307|gb|ABR46835.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] Length = 517 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 211/561 (37%), Gaps = 59/561 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +QL ++ + L + + + + L ++ +F + P Y LY L + Sbjct: 7 QIRNQLNEYIQ---GLDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +NI D +I V +A++ +A QGLP++ + YE NS+ Sbjct: 64 SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG--SFRKIGARPTASVMIRA 179 +TS + + A + +A T++ I G+ A V++ +P+ A ASV + Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181 Query: 180 INPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIV 234 + + +S + I LV+ AV L+ +VT+ G++L + +++ Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292 QA+Q ++E +I L++ G N L D+ + + P + + IR Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + P + + V L D+ + NYEIN + Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVKAHG 361 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++ +S+AV VNK L + D E+ IVSAA G+++R + + + Sbjct: 362 QVHDISVAVYVNKSTLADGD-------LSDQERRELINIVSAAAGLDTR---VVQVGVQE 411 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + Q++ L+ L+ L+ TL++ + + N ++ Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEEI 468 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 V I + +G Q ++ Sbjct: 469 LVQDVMIPDELEEINLDLSG--------------------------------SQVKQQIE 496 Query: 533 HMIEINEERFAKILRKWARSE 553 ++ + A++L+ W E Sbjct: 497 KLVNKKPDAVAQMLKNWINEE 517 >gi|307699904|ref|ZP_07636955.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16] gi|307614942|gb|EFN94160.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16] Length = 536 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 103/553 (18%), Positives = 210/553 (37%), Gaps = 29/553 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I++ L + + + ++ + V ++ + +V P Y L+ L D Sbjct: 5 IVNTLDRVKDTVKEFTLAQKTLVIIGVAVLVLGGVVLYSWVGRPSYTVLFSGLTEKDQAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L I ++++DNG + VPS+ + +AR+ LAA LP+ +GY + D + Sbjct: 65 VTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLPAE-PTTGYAVLDNL-GVAA 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 + F Q++ + RALEGE+A+TI S+ I + V + +P F + + Sbjct: 122 SDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPK 181 Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +AI ++V+A++PNL G V+V+D+ G L+ + + Sbjct: 182 KGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETE 235 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297 + + +GV N + + EL +T+Q VY DP+ V++ S Sbjct: 236 KSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYS 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 + + V N+ + + + + + +N +N + TT Sbjct: 296 GSGAVVAGVLGPDNIGNPYELRNGNGG---KYENNQTVNNNAVNEELTNTTRSPGAAMSK 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +I+VV+N+ + + ++ V+AATGIN+ RGD I ++ F + Sbjct: 353 TISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTA 400 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 R T + + G +++ + + A+ + ++ G+ Sbjct: 401 QKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P P + A + + + + + Sbjct: 461 LDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELALD 520 Query: 538 NEERFAKILRKWA 550 + A+ LR W Sbjct: 521 KPQLVAEQLRAWM 533 >gi|150390487|ref|YP_001320536.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] gi|149950349|gb|ABR48877.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF] Length = 517 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 211/561 (37%), Gaps = 59/561 (10%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I +QL ++ + L + + + + L ++ +F + P Y LY L + Sbjct: 7 QIRNQLNEYVQ---GLDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +NI D +I V +A++ +A QGLP++ + YE NS+ Sbjct: 64 SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG--SFRKIGARPTASVMIRA 179 +TS + + A + +A T++ I G+ A V++ +P+ A ASV + Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181 Query: 180 INPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIV 234 + + +S + I LV+ AV L+ +VT+ G++L + +++ Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292 QA+Q ++E +I L++ G N L D+ + + P + + IR Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + P + + V L D+ + NYEIN + Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVRAHG 361 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++ +S+AV VNK L + D E+ IVSAA G+++R + + + Sbjct: 362 QVHDISVAVYVNKSTLADGD-------LSDQERRELINIVSAAAGLDTR---VVQVGVQE 411 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F ++ + Q++ L+ L+ L+ TL++ + + N ++ Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEEI 468 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 V I + +G Q ++ Sbjct: 469 LVQDVMIPDELEEINLDLSG--------------------------------SQVKQQIE 496 Query: 533 HMIEINEERFAKILRKWARSE 553 ++ + A++L+ W E Sbjct: 497 KLVNKKPDAVAQMLKNWINEE 517 >gi|332981431|ref|YP_004462872.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON] gi|332699109|gb|AEE96050.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON] Length = 533 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 108/574 (18%), Positives = 221/574 (38%), Gaps = 71/574 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + QL +F++ T + RI+I A +I+ I + A + Y LY L++ + Sbjct: 9 NMRKQLNEFWQGLTPSQKNRIIIAAVLIIAGIAVTGAI--WGRR-QYTVLYSGLDIKEAG 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I+ L E + +R + G++I VP K R+ LA QG+P + N Y+LF + ++FG Sbjct: 66 EITQKLDEMGVPWRTAAGGTAIEVPKGQDAKIRMQLATQGIPKTGGN--YDLFMQSSAFG 123 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179 T + ++ + + + +I +I G+ A V+I +P+ SF + TASV+++ Sbjct: 124 TTDYKEQKLYIFQQQERLQESIMTIQGVDQAVVNISVPEKDSFVLKNDVQPATASVLLKL 183 Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQ 235 K I+ LVA +V L +VTV+D +L+ E + + + + + Sbjct: 184 SPGVEMKSAQVSGIQQLVAKSVIGLKSENVTVIDDKANILSVEQKEDDIRTADQQVDLEK 243 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292 +Q E++ + + L G V +L+ D + I + P D + S++ K Sbjct: 244 KVQDELQQKLLQLLEPIFGPKKVVVGVGVQLDFDKRSSESIQWQPVLDDEGIAVSMQTIK 303 Query: 293 DA-------------QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339 ++ + + VE + + D + +K+E NYE Sbjct: 304 ESMINMPAGEVPGTANNGADTGGQGPPPVEDDTGNNPDGYPGTNQGNSEYNKEENTINYE 363 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 +N KL+ ++I+VVV+ + + ++ +V+ A GI+ Sbjct: 364 VNQLKQQVEEAQGKLKSMTISVVVDGENI------------SEQVRQQVQSVVAGAAGID 411 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 ++ + + +M F + ++ N ++ L+ + A Sbjct: 412 AQ---YVIVQAMPF-SVASLQEDINNALNASQQQKQADSMRNIILGLITAAVAGAAAFIA 467 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 +R + A + E+ I I Sbjct: 468 VRVANGRRGAVEPEMVEAGIPEGVSIEEIPMEPEDE------------------------ 503 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ +++ + A++LR W + Sbjct: 504 ----HTKIKQQIEKLVDQKPDVVAQLLRTWLNED 533 >gi|257140593|ref|ZP_05588855.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 377 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 131/382 (34%), Gaps = 18/382 (4%) Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242 AI LV+++VP++ +VT++D G LLT + L VQ I+ + Sbjct: 2 LDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQ 61 Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---T 299 I+ LA G N RS V A+++ + Y P+ ++S S+ S Sbjct: 62 KRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELAQ 121 Query: 300 SQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 S N P + P + +D+K+ +NYE++ Sbjct: 122 SGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQSM 181 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 ++RLS+AVVVN T+ GR Q LA++ ++V A G + +RGD++ + + Sbjct: 182 GTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNS 241 Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 F + D++ V L ALRR Sbjct: 242 AFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPA 301 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 V + + + + S +++ Sbjct: 302 AAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAFESEK-------NRYERNLDYA 354 Query: 532 LHMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 355 RTIARQDPKIVATVVKNWVSDE 376 >gi|303240288|ref|ZP_07326807.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2] gi|302592198|gb|EFL61927.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2] Length = 524 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 84/553 (15%), Positives = 174/553 (31%), Gaps = 43/553 (7%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 + + +L +++ + + + ++ + + Y L + D I L Sbjct: 10 QRITELWKNLDKSQKGRIYVISAILVIAITVSIVMLTRTTYVPLVTIDDTKDAAEIEKVL 69 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I+++ G+ I V S KA LA+ G SS N +E + S T + Sbjct: 70 QDKGINYK-PGEGNKILVDSKEKNKAEFALASSGFTSSGMN--FEDAWNLVSITSTESDK 126 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVY 185 + + + ++ + A + + MP F + + TA V I Sbjct: 127 KQLWENFKKNSLVAKLKMFDNVRDADIEVTMPKDSLFFDDTSSDKATAFVRIDPKGEITS 186 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMN 244 + + I +V+A++ LD DVTV+D+ +L+ + + + ++ E+E N Sbjct: 187 EQVKGIVSVVSASIDGLDPKDVTVVDNNFNILSTDASDAIGDTSTQYKMKLKVKQELEKN 246 Query: 245 INKALA-AFLGVDNFRSAVVAELNMDTQQIR-EIVYDPDSKVERSIRLSKDAQRSETSQP 302 I D V L D Q+ + V P+ E + + + Sbjct: 247 IKVLYPNKSSSYDYISVVVNPVLEFDKQKTTKKEVGKPNDIDEAVVSSHTEKEELVNGAN 306 Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362 + N + + +K N + N + +V Sbjct: 307 GGVPGTDSNPGNGTTTYPIQAGDNSTYNKTTTDINRQFNETMTEVEKAQGDINFDQSSVA 366 Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 V L + D +LA+ +++S AT I ++ + + +L Sbjct: 367 V---TLWYGQKVADDSAITPEFLAQCQQVISGAT--------NIPVSKISINKYKLAPEE 415 Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482 D + ++ +G + P Sbjct: 416 VYTEPLSDKIQQYIEDYGYFA------------------------LMLMLIIGLLIAVIP 451 Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 A G M + +A S Q I I+ + ++ ++ E Sbjct: 452 RKKKEAAAVGEMLSPELATASGPQFIVPEDEEPVPEISYEEKSEVKKQIERFVKEKPESV 511 Query: 543 AKILRKWARSEIE 555 A++LR W + + Sbjct: 512 AQLLRNWLSDDWD 524 >gi|239815256|ref|YP_002944166.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] gi|239801833|gb|ACS18900.1| flagellar M-ring protein FliF [Variovorax paradoxus S110] Length = 502 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 105/524 (20%), Positives = 187/524 (35%), Gaps = 46/524 (8%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 L + + L +L ++ AA ++V Y L+ L+ D ++ L Sbjct: 1 MNFWQGLTQRARIGLVGGVLAIVLAMSAAAWWVFHTEYQVLFADLKPQDAQAMTTELDRL 60 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I +R+ D+G+SI V + V RI L + LP G ELF+ + FG+T F Q+I Sbjct: 61 KIPYRLGDSGTSILVDKATVHATRIKLMGKELPLQG-TVGLELFNNTD-FGMTEFAQKIN 118 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188 RAL+GE+ RTIQS++ + RV + +P+ G F++ ++ AS+ + + Sbjct: 119 YQRALQGELTRTIQSLAQVREVRVLLALPEQGLFKQATSKAKASITLTLRQGQTLRAEQV 178 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEIEMNI 245 ++ LVAAAVP + DVT++DS G LT E L + + + + + Sbjct: 179 TGVQRLVAAAVPGMATQDVTIVDSHGVALTRAEGSSGELETSSARLDLKRDTEAYLSRKV 238 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 L G ++V LNMD + P + + ET + A Sbjct: 239 AAVLDRSFGAGQALASVDVMLNMDQIRTTTEDVLPAATRSGLQSTGVVVRERETLRDAGA 298 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 + + Y + + + R+ + VV K Sbjct: 299 AL----------DARASDVGGPRSGSAQRDVEYAVGRRVEQVVSQQGSIRRIQVVAVVRK 348 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE---------- 415 + ++ K+++AA G + RGDTI + S+ Sbjct: 349 -------------TLDAAQEDQLRKVIAAAAGASIERGDTIVVQSLAGSAMLAPDAAAGA 395 Query: 416 ------NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 + L + T + L+ ++ L A RR + +A Sbjct: 396 AAAAHAALTSEESDEAPVSSNSLDKASPTPVQWLLGGALITMLAVWLLRAGRRGVAVREA 455 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 +G + P + + + +R Sbjct: 456 SQGAASLSEAERAAALRRVRDWMREPMSSAPAGNPAAPGPTGAR 499 >gi|269976266|ref|ZP_06183262.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1] gi|269935595|gb|EEZ92133.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1] Length = 536 Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 103/553 (18%), Positives = 208/553 (37%), Gaps = 29/553 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I++ L + + + ++ + V ++ + +V P Y L+ L D Sbjct: 5 IVNTLDRVKDTVKEFTLAQKTLVIIGVAVLVLGGVVLYSWVGRPSYTVLFSGLTEKDQAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L I ++++DNG + VPS+ + +AR+ LAA LP+ +GY + D + Sbjct: 65 VTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLPAE-PTTGYAVLDNL-GVAA 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--- 179 + F Q++ + RALEGE+A+TI S+ I + V + +P F + + Sbjct: 122 SDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPK 181 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +AI ++V+A++PNL G V+V+D+ G L+ + + Sbjct: 182 KGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETE 235 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297 + + +GV N + + EL +T+Q VY DP+ V++ S Sbjct: 236 KSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYS 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 V N+ + + + + + +N +N + TT Sbjct: 296 GGGAVVGGVLGPDNIGNPYELRNGNGG---KYENNQTVNNNAVNEELTNTTRSPGAAMSK 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +I+VV+N+ + + ++ V+AATGIN+ RGD I ++ F + Sbjct: 353 TISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTA 400 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 R T + + G +++ + + A+ + ++ G+ Sbjct: 401 QKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P P + A + + + + + Sbjct: 461 LDQLPDPYTLTPPEEEALAIESAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELALD 520 Query: 538 NEERFAKILRKWA 550 + A+ LR W Sbjct: 521 KPQLVAEQLRAWM 533 >gi|227876739|ref|ZP_03994848.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243] gi|306817686|ref|ZP_07451428.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239] gi|227842636|gb|EEJ52836.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243] gi|304649500|gb|EFM46783.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239] Length = 536 Score = 226 bits (575), Expect = 9e-57, Method: Composition-based stats. Identities = 103/553 (18%), Positives = 208/553 (37%), Gaps = 29/553 (5%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I++ L + + + ++ + V ++ + +V P Y L+ L D Sbjct: 5 IVNTLDRVKDTVKEFTLAQKTLVIIGVAVLVLGGVVLYSWVGRPSYTVLFSGLTEKDQAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L I ++++DNG + VPS+ + +AR+ LAA LP+ +GY + D + Sbjct: 65 VTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLPAE-PTTGYAVLDNL-GVAA 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 + F Q++ + RALEGE+A+TI S+ I + V + +P F + + Sbjct: 122 SDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPK 181 Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +AI ++V+A++PNL G V+V+D+ G L+ + + Sbjct: 182 KGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETE 235 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297 + + +GV N + + EL +T+Q VY DP+ V++ S Sbjct: 236 KSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYS 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 V N+ + + + + + +N +N + TT Sbjct: 296 GGGAVVGGVLGPDNIGNPYELRNGNGG---KYENNQTVNNNAVNEELTNTTRSPGAAMSK 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417 +I+VV+N+ + + ++ V+AATGIN+ RGD I ++ F + Sbjct: 353 TISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTA 400 Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477 R T + + G +++ + + A+ + ++ G+ Sbjct: 401 QKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460 Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 P P + A + + + + + Sbjct: 461 LDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELALD 520 Query: 538 NEERFAKILRKWA 550 + A+ LR W Sbjct: 521 KPQLVAEQLRAWM 533 >gi|85710179|ref|ZP_01041244.1| flagellar M-Ring protein [Erythrobacter sp. NAP1] gi|85688889|gb|EAQ28893.1| flagellar M-Ring protein [Erythrobacter sp. NAP1] Length = 547 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 103/551 (18%), Positives = 196/551 (35%), Gaps = 60/551 (10%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71 ++ + + + A V L+ +++ A F + LY L + ++ AL Sbjct: 32 RAFMAQPAFQRALAALVGLIAVVVAGALYFAIAQGPQRILYSDLSDVERAKVVQALETGG 91 Query: 72 IDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 I + I ++ +I+V + + +AR+ +A+ GL ++ G G + ++ Sbjct: 92 IGYAIDNSTGAITVAETDLYRARMLVASDTGL---AAPEGASAMLDAIPLGSSRTLEGER 148 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188 A E E+ TI+ I GI + RVH+ P+ +F + P+ASVM+R Sbjct: 149 LRLARERELMLTIREIDGIESVRVHLATPERSAFVRENNPPSASVMVRLVSGRSLGRSQV 208 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 EAI +LV+ +VP L V V+D G+LL+A E L + + + ++ + Sbjct: 209 EAIVNLVSGSVPGLTPDKVRVVDQNGRLLSAAREEALGG---LVLQREFEAKLREQLGTL 265 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 LA LG NF S V E ++ ++ D + + A R V Sbjct: 266 LAPLLGEGNFSSQVQVE--LEQEESTSARESYDREGVIRSESERSATRMAGGAVGGIPGV 323 Query: 309 EQNMPHVSDRKVPLP---------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359 N P + V P ++ + + Q NYE+ + T+ L +LS Sbjct: 324 AANTPPPDAQLVDGPPEATAVDGEQAADRDQEVSTQRNYELGREVAVTSTRPGGLVKLS- 382 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 + + +A ++ ++SAA G + RGDT+ + F Q Sbjct: 383 --------VAVAVSDAALAAAAPMTAEQLQSLISAAVGADEGRGDTVEVVVSAFENAQTQ 434 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + + + R+ +I + K + Sbjct: 435 PLAFYEQKWFADVLRYATALIA----------------------VLLVLLLGVRPLVKRL 472 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P ++ + + D A D S ++ + Sbjct: 473 REPSAAAAELASDEGEGDETAYDQQQIAEEPVSDAFPQKVELA---------RQLAASQP 523 Query: 540 ERFAKILRKWA 550 +R + L++ Sbjct: 524 DRAVEALQRML 534 >gi|125972986|ref|YP_001036896.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405] gi|125713211|gb|ABN51703.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405] Length = 517 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 86/560 (15%), Positives = 178/560 (31%), Gaps = 57/560 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + Q+ F+K+ +TRIL+ + +++V + + + + Y L + ++ Sbjct: 8 MQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVQDPDSISA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I AL E NI ++ G I V S +A LA+ GL +E + Sbjct: 65 IEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVSS 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181 + ++ + + ++ + A + + +P+ F A+V I Sbjct: 122 SESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPKG 181 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHE 240 + E I +VA+++ LD +VTV+D+ +L + NI + I+ E Sbjct: 182 ELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKEE 241 Query: 241 IEMNINKALAAFLG-VDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQRSE 298 +E NI + D AV L++D R+ + P E + + + Sbjct: 242 LEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEELI 301 Query: 299 TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-- 355 A ++ N + + K E N A + Sbjct: 302 NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGTMNFQ 361 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 S+ V + G + D ++ E + +S ATGI IT+ Sbjct: 362 ESSMTVALWYGNRVPDDSK-----LTDEFIEEFKQGLSNATGIPVG---KITVNKQKL-- 411 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + ++ ++ +L ++ + G Sbjct: 412 APQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVM----PRKKKSPQLAPELATAG 467 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G ++ IN + ++ + + Sbjct: 468 GPNVDEAEEELP------------------------------PINFEEHSEIKKQIENFV 497 Query: 536 EINEERFAKILRKWARSEIE 555 + E A++LR W + + Sbjct: 498 KQKPESVAQLLRNWLSEDWD 517 >gi|256004783|ref|ZP_05429758.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360] gi|281417197|ref|ZP_06248217.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20] gi|255991233|gb|EEU01340.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360] gi|281408599|gb|EFB38857.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20] gi|316940778|gb|ADU74812.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 1313] Length = 517 Score = 224 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 86/560 (15%), Positives = 178/560 (31%), Gaps = 57/560 (10%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + Q+ F+K+ +TRIL+ + +++V + + + + Y L + ++ Sbjct: 8 MQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVEDPDSISA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I AL E NI ++ G I V S +A LA+ GL +E + Sbjct: 65 IEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVSS 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181 + ++ + + ++ + A + + +P+ F A+V I Sbjct: 122 SESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPKG 181 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHE 240 + E I +VA+++ LD +VTV+D+ +L + NI + I+ E Sbjct: 182 ELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKEE 241 Query: 241 IEMNINKALAAFLG-VDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQRSE 298 +E NI + D AV L++D R+ + P E + + + Sbjct: 242 LEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEELI 301 Query: 299 TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-- 355 A ++ N + + K E N A + Sbjct: 302 NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGTMNFQ 361 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 S+ V + G + D ++ E + +S ATGI IT+ Sbjct: 362 ESSMTVALWYGNRVPDDSK-----LTDEFIEEFKQGLSNATGIPVG---KITVNKQKL-- 411 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + + ++ ++ +L ++ + G Sbjct: 412 APQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVM----PRKKKSPQLAPELATAG 467 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 G ++ IN + ++ + + Sbjct: 468 GPNVDEAEEELP------------------------------PINFEEHSEIKKQIENFV 497 Query: 536 EINEERFAKILRKWARSEIE 555 + E A++LR W + + Sbjct: 498 KQKPESVAQLLRNWLSEDWD 517 >gi|253573518|ref|ZP_04850861.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786 str. D14] gi|251847046|gb|EES75051.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786 str. D14] Length = 527 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 93/578 (16%), Positives = 205/578 (35%), Gaps = 76/578 (13%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I +F + + +L S ++ + + Y+ + L+ + Sbjct: 1 MNERITQYRDRFLGYWNQFSKKQKTLLVSTATFILLAIILLTIQFSKTEYEVAFTGLDST 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 D I L I +++ +G++ISVPS + ++ + +QG+ + S G E F++ + Sbjct: 61 DAAGIINYLESGGISYKLGPDGTTISVPSKDAARVKVDVGSQGIVQNGS-IGLEAFNESS 119 Query: 119 SF-GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASV 175 S G+T + A+ GE+ + ++ + G+ A+V I +P F + TAS+ Sbjct: 120 SLIGMTDNEFNVKYKNAINGEVEQLLKRMQGVNDAKVLINLPAENVFASPDEQEKATASI 179 Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----- 228 ++ + +LV +VPNL + ++++ S +L + Sbjct: 180 VLTFKPGYRPNQEAIDGYFNLVKTSVPNLPVENISLSSSDDTILLPSGQGGTTGSLTSAV 239 Query: 229 -KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DS 282 +++++ + + ++ ++ + L+ G D V ++LN D ++ + P Sbjct: 240 QENMALQKKFESDVRQSVKQFLSRLTGPDKIEVLVASKLNFDQVSQKDNLVTPVDTENMK 299 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342 +E S + + + + + V + ++++ NYE+N Sbjct: 300 GIEISAQKVQKSYTGSANPTSGVPGTGEE--DVVNYPSSETNGGSSSEESSSTINYEVNR 357 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV-------SAA 395 + Y ++ L+I V + G+ S + I K + S Sbjct: 358 ITKDIIASPYVIKDLTINV-----AVEPPEGQETLDENTRSAIENILKNIVGSYLADSGT 412 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 T + +++ S F D + + ++ + LV+ VG + L Sbjct: 413 TYTDEELQRKVSVLSQPFHS--------------DTVQKAGLSLSSPLVWGVGGAALLAL 458 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 + A++ E L+P S + T N Sbjct: 459 AGLGIVLFRRRKQAQEEEEEIALPLTPEFPSINLDTVTNEN------------------- 499 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 Q +L + + + F +LR W E Sbjct: 500 ----------QVRKQLETLAKKKPDEFVNLLRTWLADE 527 >gi|330809237|ref|YP_004353699.1| flagellar M-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377345|gb|AEA68695.1| Putative Flagellar M-ring protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 458 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 177/413 (42%), Gaps = 44/413 (10%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 +S R + L+ + L A+ ++V P Y LY + + +I LS+ ++ + Sbjct: 7 SSFLAGRTRVFLIGALLIVGLLAASAWWVLRPQYVALYRNADEASQAQILATLSQRHVPY 66 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 RI+ +I V + AR++LA G+P+ G+ELFDK + +G++ F Q+I RA Sbjct: 67 RINTQQGAIEVLADHAASARMYLAEAGIPTRGGT-GFELFDKAD-YGMSEFSQKINYQRA 124 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYKSAEAIR 192 +EGE+ARTI S+S + ARVH+ +++ P ASV++R + + I+ Sbjct: 125 MEGELARTIMSMSEVEYARVHLTFKKTSLYQQAEEPPKASVIVRLRSAGTLMPQRVRGIQ 184 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 LV++AV + + V+VL+ G++L+A++ + L + ++ +++ + LA Sbjct: 185 QLVSSAVEGMTLERVSVLNEDGQVLSASD-GAAAAPEHLQLTAQVEQVLKLKAEELLARP 243 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312 LG +V +N D + + S + E Sbjct: 244 LGHRGVDVSVRVLMNFDRVKSISEQPLTNKMRREKRTESTENSNGE-------------- 289 Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372 S + + +YE+ T H K+ER+++ VV+ Sbjct: 290 ------------STSKRSQNNREIDYEVGKARAETEHAAGKIERITVGVVL--------- 328 Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425 D+ + +I ++ AA G++ +RGD + + + + Sbjct: 329 ----STPVSDAQMKDIQALLEAALGLDLKRGDRLVMVYIPDMPVPETTPVAEP 377 >gi|183220151|ref|YP_001838147.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910271|ref|YP_001961826.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774947|gb|ABZ93248.1| Endoflagellar biosynthesis/type III secretory pathway protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778573|gb|ABZ96871.1| Flagellar M-ring FliF protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 566 Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 114/590 (19%), Positives = 217/590 (36%), Gaps = 66/590 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + L +T+ +ILA V+ V ++ + + + L+ L+ D + Sbjct: 5 LQKIIDNLKELFNKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSKDFSE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L + S S I+V + LA + L + G+ELFD + F Sbjct: 65 VTKKLDALGYSYG-SSETSLITVDPEQRQEIVTKLAQENLIPAGVT-GWELFD-IEKFTE 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 T F ++I + RAL+G I +++ ++ I A V+I +P+ F ASV++ Sbjct: 122 TQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEGDLFESNSYPVKASVILHFRPG 181 Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI-- 237 K + I +LVA AVP L +V+V D GK+++ E + L IVQ Sbjct: 182 VEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKLR 241 Query: 238 --QHEIEMN---INKALAAFLGVDNFRSAVVA---ELNMDTQQIRE--------IVYDPD 281 + E I L +LG R + N D + + E +PD Sbjct: 242 IEEEERVKRLIDIRNTLRWYLG-GEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPD 300 Query: 282 SKVER-----------SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 + S + +K++ + P+ E N+P Sbjct: 301 TPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPNLPP---GYKDTDYQKAEYS 357 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYL 385 K E +NYE N + +K+E++ ++VVV+ + + L Sbjct: 358 KDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKEREDGLGYDRKYIPVAEPDL 417 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 I K + AA G RGD I++ ++ + F + + R ++ A + Sbjct: 418 KLIRKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEF----QRQRAIRNMVIASLV 473 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 ++ L++ L A+++ + E + V ++LD Sbjct: 474 ILILLILAILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDE-- 531 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + ++ +++ + E A++LR W E + Sbjct: 532 ----------------KLRRELLENAINLAKEKPEDVAQLLRTWLAEEEQ 565 >gi|302338077|ref|YP_003803283.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293] gi|301635262|gb|ADK80689.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293] Length = 569 Score = 219 bits (558), Expect = 9e-55, Method: Composition-based stats. Identities = 103/598 (17%), Positives = 209/598 (34%), Gaps = 74/598 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEV 57 M + + Q + LILA+V++V ++ + +P L + Sbjct: 1 MNEWLKKSIDQLKALWGKWSMVQKLILAAVVVVAVVGIVLMLHVSATPSMVPLITAPITD 60 Query: 58 SDV-NRISVALSEANIDFRISDNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELF 114 D ++ISV L E ++ I+ G I VP + R+ LA + L + ++ +++F Sbjct: 61 QDKLDKISVRLDEEGVEHTITAEGL-ILVPDKRTAQ-RMVSILAREDLIPADTSP-WDIF 117 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 K++ + LT F + + RA+ + + I+++ + A+V +V+P+ F++ TAS Sbjct: 118 -KMDRWTLTDFERNVNLRRAITENLEQHIEALEDVDNAQVTLVLPEDKLFQEDQNPVTAS 176 Query: 175 VMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----N 225 V+I S E I LV AV L ++ + D G +L Sbjct: 177 VIITPRPGSDITQSRSKIEGIVKLVRLAVEGLKDENIVISDQRGVVLNDFADMADFDRLE 236 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVY------ 278 + + L Q ++ + I ++ G D V +L+ + + + Sbjct: 237 LSKRQLDQKQRLEATYKNQIFTEMSQIFGSDRVSILKVDIDLDFRKETVSTEEHFPVTTV 296 Query: 279 --DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 +P++ RS + K+ + PE E P + Sbjct: 297 EDNPNTPYNEREYVLSIPRSSEIVKEEFKGTGFNPEGPPGQEGQTPPAYKDM---NNLVG 353 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG------------RS 375 N +K E N E+NT++I + + R+++ V V+ Sbjct: 354 NYNKNSEIINQEVNTRNIVEEKSPWTIRRITVGVAVDGVWRWSYNENGTVKLDTDGSIER 413 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 D L + ++ A G N RGD++T+ + F + F L + Sbjct: 414 EYTPVSDEDLNKAQTLIEHAVGFNRERGDSVTVQHIQFDRSNQFAQEDEHFRAQKRLQQ- 472 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 I + + ++V F+ + R + E + + Sbjct: 473 ---AILYSIIGLAVIIVAFIVFRLISRELERRRRLREEELARQHQMMREAAL-------- 521 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ + + + ++M + E A+++R W E Sbjct: 522 ----------RNAEEEEMEVAMSVEERARMEMQENAINMAREHPEDVAQLIRTWLAEE 569 >gi|220929468|ref|YP_002506377.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10] gi|219999796|gb|ACL76397.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10] Length = 523 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 95/559 (16%), Positives = 190/559 (33%), Gaps = 54/559 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L L +++ + + V ++ F + P Y + +DV + Sbjct: 9 LKPLLDFWKGLDKSQKTRIFIITGVVVVSVGIGLFLITRPTYTTVISNASSADVAAMQKI 68 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN--SFGLTS 124 L E I ++++D+ S I V +A L S+ S SG+ D ++ T Sbjct: 69 LKEKGISYKLTDDKSGIIVNEKDSDEAHFEL------STGSKSGFTFADALSNLKINTTE 122 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS--FRKIGARPTASVMIRAINP 182 ++ + E +IAR ++ I A V IV P+ ASV+I + Sbjct: 123 SDKKHIWQQLDESDIARQLKLFQNIEDANVTIVRPEKTLLIDDSNSKDAKASVVITPKDE 182 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEI 241 K AE+I LVA++V LD +VTV+D+ G +L +E + + + ++++ Sbjct: 183 ISAKQAESIVKLVASSVEGLDPKNVTVVDNKGNILNIDSESGMDKTSTQYDMKKKYKNDL 242 Query: 242 EMNINKAL-AAFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRLSKDAQRS-E 298 E N+ + L D + V L+ DT +P+ +I ++ + + Sbjct: 243 ERNLREVLVDQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAILSRQETREDLK 302 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK--LER 356 V N P + ++ K + N++ N + + ER Sbjct: 303 NGDTGGTPGVNSN-PGTTPTYPAGSDDSKSYKKSDLTENFQYNETNKQIEKSLGELIPER 361 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 S A+ + G + D + ++ + S ATGI + I Sbjct: 362 SSAAITLLYGNRVLDDSK-----LNDEMITQVKNLASMATGIPAE-----NIAVTKLKIQ 411 Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476 + L ++ + + + +++ Sbjct: 412 PPVVETPSTADTIRNLISNYGLLALLALMAIAFVIIAL---------------------- 449 Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536 P + L +DN A+ S I++ + ++ ++ Sbjct: 450 -----PKKSKQKLEPALAVDDNAAITSPKFVYNEIRPEPVPEIDTEERSEVKKQIDKFVK 504 Query: 537 INEERFAKILRKWARSEIE 555 + A++LR W + E Sbjct: 505 QKPDAVAQLLRNWLTDDYE 523 >gi|330946121|gb|EGH47363.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 236 Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 4/236 (1%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92 + + A + P Y LY L D +I L+ ANI++ + N ++ V S V + Sbjct: 1 MAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 60 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ S +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 61 ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 120 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ AI +LVA +VP L +TV+ Sbjct: 121 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 180 Query: 211 DSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264 D G LL+ + GK + ++ + + L LG D +++ V A Sbjct: 181 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSA 236 >gi|218681104|ref|ZP_03529001.1| flagellar MS-ring protein [Rhizobium etli CIAT 894] Length = 282 Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 167/272 (61%), Positives = 212/272 (77%), Gaps = 2/272 (0%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +IL V V I + +AA FVN P + LYV L+ D+N+IS+AL+EANI+F++ +GSS Sbjct: 1 MILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDQPDLNQISMALAEANINFQVGTDGSS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 ISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S GLTSFMQE+TRVRALEGEIART Sbjct: 61 ISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIART 119 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 IQSISGI AARVHIVMP++G+FRK +PTASVMIRA + +A +IRHLVA+AVP L Sbjct: 120 IQSISGITAARVHIVMPEVGNFRKQEQKPTASVMIRASAVTGRSAATSIRHLVASAVPGL 179 Query: 203 DMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261 D+ DVT+LDS G+LL + + N +SL IVQ +Q E+E NI+KALA FLG+DNFRS+ Sbjct: 180 DVDDVTILDSAGQLLASGDDASNSSLNRSLGIVQNVQQEVESNIDKALAPFLGMDNFRSS 239 Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 V A+LN D QQI+E YDP+SKVERS+R +K+ Sbjct: 240 VTADLNTDAQQIQETTYDPESKVERSVRSTKE 271 >gi|291519597|emb|CBK74818.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Butyrivibrio fibrisolvens 16/4] Length = 537 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 76/560 (13%), Positives = 175/560 (31%), Gaps = 37/560 (6%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AIL+++L++++ T R + +++ S+ V ++ + + P L V + Sbjct: 7 AILNKILEWWRKFT---RRQQVLIVSITAVVVVSLIILGVILTRPTMMQLVVCEDGKQAA 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L + I + S +G + + +A + L + +P+S + SF Sbjct: 64 AVKTLLEDEGIKYETSQDGYTFYIDEKDEWRANVLLGSNEIPTSKYTIDNVI---DGSFS 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180 T ++ LE + A I+ + ARV + +P+ + +SV++ Sbjct: 121 TTEADKQKRYKILLEQQFAEDIEQFEMVEKARVTLNIPEDDGTIIARDQPGWSSVILTLS 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAI 237 P ++ I ++A + N ++T++D+ G LL + Sbjct: 181 APISDETVTGIATIMATNLANETTDNITIMDTDGNLLYPTANTGSAGASASANQDARDKA 240 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ-IREIVYDPDSKVERSIRLSKDAQR 296 + EI + L D V +N D + + + E + + Sbjct: 241 RAEIVSRVQTVLDGTNLYDAVSVGVNLSMNFDENSYVDYDYSVDEGRTEGYLDSESGSSS 300 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK--L 354 S + V + T +E +Y + + + K L Sbjct: 301 SSIGGNGGVPGTD--TNDDDTTYVMEDNNQTQTSTEEFVKDYLPDERITTHKDEIGKQIL 358 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + SI+V K + D ++ + + + + D I Sbjct: 359 DDSSISVTCKKFAIYNQDKMEKDGTLTEAGQTFDEFVKANSNPVQMEVTDDIVEIVARTT 418 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + N V + + + L+ F L + + ++ Sbjct: 419 GFPVANVKVVAYEIPMFQYSEGMPIKPTDIIQIVLALLIFAMLGFVVFRSLKTEEEEPVE 478 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +I ++A + + I ++ + + Sbjct: 479 QELTIDDLIASTAAEEEEELED----------------------IGYTEKSEARILIEKF 516 Query: 535 IEINEERFAKILRKWARSEI 554 ++ E A++LR W + Sbjct: 517 VDEKPEAVAQLLRNWLNEDW 536 >gi|326411311|gb|ADZ68375.1| flagellar MS-ring protein [Brucella melitensis M28] Length = 239 Score = 216 bits (550), Expect = 8e-54, Method: Composition-based stats. Identities = 109/227 (48%), Positives = 144/227 (63%), Gaps = 1/227 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 6 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 65 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 66 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 125 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 184 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 +SA++IR LVAAAVP+LD VTVLD+ G LL + N Sbjct: 185 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAA 231 >gi|50954404|ref|YP_061692.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950886|gb|AAT88587.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 441 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 97/404 (24%), Positives = 175/404 (43%), Gaps = 20/404 (4%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 + + +LV + +++ P LY L +D I+ L N+ + Sbjct: 17 AGFSFAQKTVSILAVLVLALGVTGLSLWMSQPQRVPLYTGLSAADAEAITQQLKTDNVSY 76 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 +++D GSSI VP V R+ AA GLP +++N GY L D ++ + F Q +T RA Sbjct: 77 QLTDGGSSILVPQESVYTERLKSAAAGLP-TAANKGYSLLDNMS-ITTSEFQQSVTYQRA 134 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR 192 +EGE+A TI+++ G+ ++ V + +P+ F A PTASV I + +AI Sbjct: 135 MEGELANTIEAMDGVKSSSVKLAIPEKTVFTDQAADPTASVFIATASGHTLTRGQVQAIV 194 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252 HL +AA+ + DV+V+DS+G +L+A ++ + +Q ++ + L Sbjct: 195 HLTSAAIVGMKPADVSVIDSSGAVLSAIGGSASVSDGTAD---TLQASVQSAVQGMLDKV 251 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQ- 310 LG N A L+ T Y P S K+ + Sbjct: 252 LGSGNSTVTANASLSQATGTKTTQTYTVPTGAPVTSSSEEKETYTGSGPAAAGVLGQPSL 311 Query: 311 -NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 + + + + + +N+ + + L+RL+++VVVNK Sbjct: 312 DVATNGTRNTTRAVGGNGSYQSAKLVKDNALNSVTETQSIPAGLLQRLTVSVVVNKTVAE 371 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + A+++++VSAA G+ + RGDT+++ + F Sbjct: 372 AAGLAT----------AQLSQMVSAAAGVETTRGDTVSVEFVGF 405 >gi|256042874|ref|ZP_05445820.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. Rev.1] gi|256112169|ref|ZP_05453090.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 3 str. Ether] Length = 237 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 109/227 (48%), Positives = 144/227 (63%), Gaps = 1/227 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 4 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 64 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 +SA++IR LVAAAVP+LD VTVLD+ G LL + N Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAA 229 >gi|17988495|ref|NP_541128.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M] gi|265998972|ref|ZP_05464502.2| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|17984286|gb|AAL53392.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M] gi|263091454|gb|EEZ15990.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|326554600|gb|ADZ89239.1| flagellar MS-ring protein [Brucella melitensis M5-90] Length = 242 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 109/227 (48%), Positives = 144/227 (63%), Gaps = 1/227 (0%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 + Q + LG +++ L V + + ++ P Y+ LYV L DVN Sbjct: 9 NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 R+ +AL EA I F + +GSSI VP AR++LA +GLP+S+ N+GYELFD + S G Sbjct: 69 RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+ +P+ASV+IRA Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228 +SA++IR LVAAAVP+LD VTVLD+ G LL + N Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAA 234 >gi|291536002|emb|CBL09114.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Roseburia intestinalis M50/1] Length = 532 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 81/561 (14%), Positives = 182/561 (32%), Gaps = 42/561 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 IL+++ +++K + +L S++ V I+ V+ P+ L+ ++ Sbjct: 7 NILNKITEWWKKFN---TKQKALLISIVAVIIVALAILAAVVSKPNMVTLHECQTTAEAG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +I +++S +G V + A I L +PS ++ +FD F Sbjct: 64 TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASID-NVFD--GGFS 120 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180 T + L+ A ++++S + +A V + +P+ + A+V++ Sbjct: 121 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 180 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237 A + +A + N + ++ +LDS +L + + LS+ Sbjct: 181 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 240 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQR 296 ++ ++ + + D+ A ++ DT + Y PD + + + + Sbjct: 241 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 300 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N V + ++ + +NY+ N K + + + Sbjct: 301 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 357 Query: 357 --LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 S+++V K R+ + A + E S T I + I++ + Sbjct: 358 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYITMISNATGI 417 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + S R + V Sbjct: 418 PTDKITIIAQEEPVFQYSSGG--------------------------RSASDYLQIVLVV 451 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +L S + + S + S+ I ++ + + Sbjct: 452 LILLLLGYVVFRSTRKEKVAEIEPELSVESLLESTKESQEEMQDIGYNEKSETRILIEKF 511 Query: 535 IEINEERFAKILRKWARSEIE 555 +E N E A +LR W E E Sbjct: 512 VEDNPEAAASLLRNWLNEEWE 532 >gi|257413753|ref|ZP_04744108.2| flagellar M-ring protein FliF [Roseburia intestinalis L1-82] gi|257202322|gb|EEV00607.1| flagellar M-ring protein FliF [Roseburia intestinalis L1-82] gi|291538496|emb|CBL11607.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Roseburia intestinalis XB6B4] Length = 537 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 81/561 (14%), Positives = 182/561 (32%), Gaps = 42/561 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 IL+++ +++K + +L S++ V I+ V+ P+ L+ ++ Sbjct: 12 NILNKITEWWKKFN---TKQKALLISIVAVIIVALAILAAVVSKPNMVTLHECQTTAEAG 68 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 + L +I +++S +G V + A I L +PS ++ +FD F Sbjct: 69 TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASID-NVFD--GGFS 125 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180 T + L+ A ++++S + +A V + +P+ + A+V++ Sbjct: 126 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 185 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237 A + +A + N + ++ +LDS +L + + LS+ Sbjct: 186 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 245 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQR 296 ++ ++ + + D+ A ++ DT + Y PD + + + + Sbjct: 246 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 305 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + N V + ++ + +NY+ N K + + + Sbjct: 306 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 362 Query: 357 --LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 S+++V K R+ + A + E S T I + I++ + Sbjct: 363 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYITMISNATGI 422 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + S R + V Sbjct: 423 PTDKITIIAQEEPVFQYSSGG--------------------------RSASDYLQIVLVV 456 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 +L S + + S + S+ I ++ + + Sbjct: 457 LILLLLGYVVFRSTRKEKVAEIEPELSVESLLESTKESQEEMQDIGYNEKSETRILIEKF 516 Query: 535 IEINEERFAKILRKWARSEIE 555 +E N E A +LR W E E Sbjct: 517 VEDNPEAAASLLRNWLNEEWE 537 >gi|225619610|ref|YP_002720867.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1] gi|225214429|gb|ACN83163.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1] Length = 542 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 103/570 (18%), Positives = 205/570 (35%), Gaps = 70/570 (12%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFRISDNGSS 82 +L ++++ + +A + L+ + L D + L NI ++ NG Sbjct: 1 MLIGILVIGLGAIIATIVLTSRRTGTLLFQQALTQEDARNVIAVLDANNIRYQYR-NGFI 59 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + KA + L +G + + G+ELFD G+T +I + R+L I + Sbjct: 60 TLNSEADKAKAELELVKEGRMPTGVD-GWELFD-APRIGITDVELDINKRRSLTKAITQL 117 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-----SVYKSAEAIRHLVAA 197 + + + A V + P I + TASV+I+A K+ ++ L+A Sbjct: 118 LTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEEVLRDPKTVRGLQQLIAM 177 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAF 252 V L VT+ DSTG +LT E + + L IV + +IE I + L Sbjct: 178 GVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKKIENKIRQTLGRI 237 Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDP-----------------DSKVERSIRLSKDAQ 295 + + + EL D I + P +KV+ S R + Sbjct: 238 Y-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPATPYDDSQFTNKVQVSTRTVTEDW 296 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + P+ A E+N+P K ++ K + Q NYE++ + A +Y++ Sbjct: 297 KGQQFIPQGAAGAEENVPPGYKDKSDRWQT---YTKTDSQDNYELSKRYEAIKKGSYQIG 353 Query: 356 RLSIAVVVNKGRLTEVLGR------------SADQGKIDSYLAEINKIVSAATGINSRRG 403 ++S AV ++ + + +V AA G + +RG Sbjct: 354 KISAAVALDGRWTKSYDQNGDPIITNGTSYVREYHPVTAEEIRNVTSLVQAAIGYDLKRG 413 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 D +++T + F FN+ ++ + R + + + L V L + A+++ Sbjct: 414 DQVSVTHIQFDHWDRFNAEDAKL----MRDRFIRKTLIITMISLLILFVLALAIRAIQKE 469 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + E + + + + + + Sbjct: 470 LARRRRLREEELERKQMEMRRQAMM-------------------NANEEPISEMSLEDAA 510 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 K+ ++ + + A++LR W + Sbjct: 511 RKKLMDEVIRVSHERPDDVAQLLRTWMADD 540 >gi|331005448|ref|ZP_08328827.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] gi|330420724|gb|EGG95011.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989] Length = 469 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 91/433 (21%), Positives = 168/433 (38%), Gaps = 44/433 (10%) Query: 14 GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 + +ILA V ++ +++ + + +Y +L+V LE D I L + Sbjct: 2 LNGFSKQSKIILAVVSIILLIILGFTAQWALNKNYQSLFVGLEPKDSAAIVQQLDALKAE 61 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 +RI+ ++ VPSS V R+ L + S GYE+FD + FG+T F Q I R Sbjct: 62 YRINKETGNVEVPSSQVHSTRLQLMGTDVTISGG-VGYEIFDNSD-FGMTEFAQRINYQR 119 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAI 191 ALEGE+ RTI S+S + +RVH+V+P+ FR+ +P+ASV + + I Sbjct: 120 ALEGELQRTITSLSQVKKSRVHLVLPERSLFRENKEQPSASVTLIVKKGMSLTGTQISGI 179 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKA 248 + LV+++V L V + D G L+ + + L + I+ + +++ Sbjct: 180 QRLVSSSVSGLKEPMVIINDQQGVTLSQEIPADEIAQAIPWRLKQKKDIESYLTEKVSRV 239 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L + ++ ++ + + E P ++ + R + + V Sbjct: 240 LRYAFKDGDIAVSIDVIIDFNYTKKMEEKVIPLAEGKAISREKESFIGGNKKTKNNNSNV 299 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 + + YE+ TT K+++LSI +++ K Sbjct: 300 TKE------------------------TEYEMGRSVAETTESPGKIQQLSIGIILTKF-- 333 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 ++ E+ ++V G N RGD I I + + +S Sbjct: 334 -----------LSENDKQELQRLVETTVGFNENRGDHIAIYTSLAIPETKEMGDKPALSV 382 Query: 429 MDILSRHFATVIN 441 I Sbjct: 383 QPKTLDDHLPPIK 395 >gi|213861543|ref|ZP_03386013.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 264 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 5/231 (2%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 13 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 73 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 130 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188 RALEGE+ARTI+++ + +ARVH+ MP F + P+ASV + Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190 Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQ 238 A+ HLV++AV L G+VT++D +G LLT + R++ L ++ Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVE 241 >gi|315654577|ref|ZP_07907483.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333] gi|315491041|gb|EFU80660.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333] Length = 453 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 95/417 (22%), Positives = 172/417 (41%), Gaps = 29/417 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I++ + + + + + + V I+ + +V SP Y LY L D Sbjct: 5 IVNAVDKVKNTVGQFSLGQKTLSIIGVAVLILGGVVLYSWVASPDYTTLYSGLTDKDQAA 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L I ++++DNG + VP+ V AR+ LAA LP + SGY + D + Sbjct: 65 VTEQLDSQGIKYQVADNG-VVKVPAKDVQSARMSLAAADLP-AQPTSGYAVLDNL-GVAA 121 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181 + F Q++ + RALEGE+A+TI ++ I + V + +P F + + Sbjct: 122 SDFQQQMAKKRALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPK 181 Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238 + +AI ++VAA+VPNLD VTV+D+ G L+ ++ Sbjct: 182 NRKDVSNDTVQAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EME 235 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297 + + +G N R + +L+ D Q +Y DP+ V+ + Q S Sbjct: 236 KSLVDKALAVVEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYS 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 V N+ + + N + N +N + +T R Sbjct: 296 GGGAVVGGVLGPDNIGNP---YELNGNNGGNYTNTQNVQNNAVNEEVTQSTRAPGAALRK 352 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 S++VV+N+ + +A++ +V+AATGI++ GD + I+ F Sbjct: 353 SVSVVLNQETARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFD 397 >gi|326791543|ref|YP_004309364.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427] gi|326542307|gb|ADZ84166.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427] Length = 529 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 85/575 (14%), Positives = 193/575 (33%), Gaps = 73/575 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLEVSDV 60 I Q + +L + + + + +L I+ A + P NL+ L+ + Sbjct: 4 TIEQISNQITEKLNNLTKKQKIQIGIGVLALIIAITAVVL-LTRPKMKNLFSENLDSKSI 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +++ L+E I +++ ++ ++I V + +A ++ A +P S + N+ Sbjct: 63 GQVATVLNENGIKYKLINDSTNIQVQENQYEQALMYTAMSDVPESGMTFDQVI---NNTM 119 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRA 179 T + ++ RT++S+ GI +ARV +V+P+ ++ + AS+ + Sbjct: 120 STTQTEMTAKNNEYKKQQLERTLRSMEGIESARVELVIPEQKNAYLQSQVESRASIFLTL 179 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQ 238 K E I ++++V NLD ++ V+DS G L + E + K I + Sbjct: 180 SKTLTTKQCEGIATYISSSVANLDKKNIVVIDSQGNTLYSGSEESQLGLNKQQEIKLLAE 239 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERSIRLSKDAQ 295 ++ ++ L D+ R + L+ D Q D + ++ + Sbjct: 240 QDVTQKVSNLLGNMY--DDVRVSPNLILDFDQYQESSQKYQTQGEDESRGVIQQETQASS 297 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ +Q + N + + S E+ + +++ + Y + + ++ Sbjct: 298 STKNNQTGAEPGTTTNGGDIPTYQTNNGTSGESKETQKDIT-YAPDKTESVYVKNPGNVD 356 Query: 356 ----RLSIAVVVNKGR------------LTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399 LS+ + NK S + + + I V +ATGI+ Sbjct: 357 LEKSSLSVNLFKNKIYREEEVKPTLTGMTWNEFKVSNREQRTLAVDESIVNSVKSATGID 416 Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459 + + + Q+ + D L F + L+ V Sbjct: 417 -------NVVVNAYENPIFLDQEVYQIDYKDYLPLVFLVLALLLIAFVVLRF-------- 461 Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519 + L+ + + I Sbjct: 462 -----------------------------RKHEEIVEVEPELEVEEMLKAAKEQVELEEI 492 Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++ ++ ++ E A +LR W E Sbjct: 493 ELKETLETKRQIDKFVDEKPEAVANLLRNWLTEED 527 >gi|238916746|ref|YP_002930263.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750] gi|238872106|gb|ACR71816.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750] Length = 536 Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 83/571 (14%), Positives = 192/571 (33%), Gaps = 54/571 (9%) Query: 3 ILDQLLQF----FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 +LD+L Q + + R + +I+ S ++V I + + ++ P Y L + S Sbjct: 1 MLDRLKQIPARLLEIWKNWTRNQKIIIVSAVVVFIAAVIVIAYVLSRPTYQELTKCEDYS 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-V 117 ++N ++ L++ ++I++ +++V + A++ +A+ + SGY L D Sbjct: 61 EMNTVTTLLTDNGYTYQINN--MTVNVKKQDLTNAKMLIASNDI----KPSGYSLDDALN 114 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVM 176 +S T + + LE + A I S+ GI A V + + D + F T +V Sbjct: 115 SSLTTTEADKNKKYAKYLETKFATDIASLDGIKKASVTVHLSDDTNSFYSTKKDTTVAVT 174 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231 + +AE+I +A AV + +T++D+TGK L L Sbjct: 175 VDTSKTVSDDAAESIAVFLATAVGSSTTNGITIIDTTGKTLFNGSDNSGSVSNISYSSKL 234 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIRL 290 I+ + + + ++ A+ +L+ DT +I + + E Sbjct: 235 KYKSQIESTVAAGVKNTALSTSLFNDATVAINLDLDWDTVNKIATEYTAQEGREEGLYDT 294 Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S + + + + N + + ++ +Q Y N T + Sbjct: 295 SYELESTGNNGAGGTPGTTSNGEGGT-TYDLTDGTSSSSTYTVKQYQYLPNQLVTTTNTE 353 Query: 351 NYKLERL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 K+ +++V + K + + E + + + Sbjct: 354 PGKIVYDTSTMSVTLIKNVVYNEDDCKKLGYLDNMTWDEFKAQNADPVQVQVNADWMNML 413 Query: 409 TSMDFLENQLFNSGTVQVSFMDILSR-----HFATVINALVFLVGTLLVTFLGLHALRRL 463 ++ + V + ++ + I + + ++ F+ L + R L Sbjct: 414 SNATGISTNNITVLAYNVPYFYDAAKTSVLSRASFWIQIALAVAILGILVFIVLRSARPL 473 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + V + ++ I+ Sbjct: 474 TVEEKEPELSVEEMLAST----------------------------KENQPTVDEIDLQE 505 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ + ++ N E A +LR W + Sbjct: 506 KSETRKAIEKFVDENPEAVALLLRNWLNDDW 536 >gi|254499113|ref|ZP_05111803.1| truncated flagellar M-ring protein FliF [Legionella drancourtii LLAP12] gi|254351652|gb|EET10497.1| truncated flagellar M-ring protein FliF [Legionella drancourtii LLAP12] Length = 403 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 90/411 (21%), Positives = 166/411 (40%), Gaps = 48/411 (11%) Query: 52 YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 + L+ D N++ L + NI +++ G I + +V K R+ + GL + N G+ Sbjct: 2 FSHLDEQDANKVLSQLEQENISYQVRHGGQDILIDKDLVAKTRLKIMGSGL-QLAGNVGF 60 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 ELFDK + FG+T F Q+I RAL+GE+ RTI S I ARVH+V+P+ F +P Sbjct: 61 ELFDKND-FGMTDFSQKINYQRALQGELERTISSFDEIRQARVHLVIPETHLFDHEENQP 119 Query: 172 TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL 231 A++ + + +I+ LVAA+V +L + +V V+D G L+ E + + Sbjct: 120 KAAITLHLKQALTNQQVRSIQQLVAASVAHLSLKNVVVVDQNGNTLSQTEED--LSSTHF 177 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + + I+H + + + L + + AE+N D +++ + P +K + + Sbjct: 178 ASKKNIEHYLNDKVTQMLHKIFAKNQVMVKINAEINYD--ELQRELIKPQTKGQITHEKE 235 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 V + +K YE ++ + Sbjct: 236 IKHST------------------VDKKGKQKGNQDLTLEKT-----YEFGSEKELFKRAS 272 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS- 410 +ERLSI+VV+ + +A++ +++ G N +RGD I++ + Sbjct: 273 GTIERLSISVVIPQYT-------------DAKTIAQVQRLIKNTVGFNEKRGDVISVEAL 319 Query: 411 -----MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 + T Q + T + L + F Sbjct: 320 IAQPVFSTKRPSPILNATPQTAMTISFWETMHTYWDKDKQWQAILALLFFI 370 >gi|302387796|ref|YP_003823618.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1] gi|302198424|gb|ADL05995.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1] Length = 534 Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 86/528 (16%), Positives = 169/528 (32%), Gaps = 50/528 (9%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98 + Y+ ++ + + +I L E +D++ + I VP++ + + L Sbjct: 35 MALSMREKPYEVMFTSVGNEEAKQIIGKLQEEKVDYQYLN--GDILVPAAQMDVTKARLV 92 Query: 99 AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 ++G P S Y++F + T ++ ++ LE I TIQ G+ A V I + Sbjct: 93 SEGYPKSGFT--YDVFKNNVNLMTTDSDRQTFKLYDLETRIGSTIQLFDGVKEAYVTIAL 150 Query: 159 PDMGSF-----RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 + + A A V+++ + A++I+ L++ ++P + + +V+V D Sbjct: 151 GETSKYALSEDDAQEASAQAVVVMKDGGSPTEEQAKSIQLLISRSIPGMVISNVSVFDGN 210 Query: 214 GKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 GK ++ + E +I + I + I+ +I + L G N R +V +NMD Sbjct: 211 GKEVSTDSGEEDINSGKTAEEISKLIEDQIAAKVMNVLGPVYGNGNVRVSVKGTVNMDKL 270 Query: 272 QIREIVYD-------PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 VY+ D S E N Sbjct: 271 IRESTVYNVPEKIDENDKTGLTSEESIYREYSGNGQTASGVAGSEANADIPQYNAGGAAG 330 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384 Y +N + LE L+++VVVN G Sbjct: 331 DNSAYGSSSLNRKYLLNQIKEQGQINPGSLENLTVSVVVNGN------------GFGTMT 378 Query: 385 LAEINKIVSAATGI-NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443 + +I + A GI + R + IT + F + ++ + L Sbjct: 379 IDDIRNLAGNAAGIAQADRAEKITAVAAPFYTIDVPKQPDEP---VETGANGILVNQWIL 435 Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 + + + + L + + R A + T + L Sbjct: 436 IAALAGVFLLLLIIILVVRHRRKKKALMENMEDLEDSQEDVPIIPEFTKEPDEEREILVP 495 Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 + + E N E A++L+ W Sbjct: 496 EEDRG----------------AELRESVREFAEQNPEISAQLLKTWLN 527 >gi|224531746|ref|ZP_03672378.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116] gi|224511211|gb|EEF81617.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116] Length = 569 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 95/589 (16%), Positives = 197/589 (33%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I I+ F+ L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGLSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPIHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL+ L VD F + V +L+ + I Y P Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETIESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLG---------RSADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWSFVYDEKGNFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + + D++ Sbjct: 475 IASIIFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D + L + E AK++R W Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|289433991|ref|YP_003463863.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170235|emb|CBH26775.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 547 Score = 210 bits (533), Expect = 7e-52, Method: Composition-based stats. Identities = 89/575 (15%), Positives = 206/575 (35%), Gaps = 51/575 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNR 62 + ++ + + + ++ + ++ ++N+P + LY L + + Sbjct: 1 MAKIKTMYSKLKNWHK------GAIFVGLFVVVTVFLLYLNTPKTEITLYKNLSETSQQQ 54 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L++ +D+ + +G+ I V + R A G+P + G ++ +S G Sbjct: 55 VTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADLGIPYTG-QDGNDILLN-SSLGA 111 Query: 123 TS----FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASV 175 + +++ LE EI ++ + + +A V + +P+ S + ++ ++ Sbjct: 112 SEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEEASQKGSAAVTL 169 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGKSL 231 + + I+ V+AAVPN+ DV ++D+ +++ + + + Sbjct: 170 KTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEV 229 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 I AI ++ +I L++ +DNFR +N D + P+ RS + Sbjct: 230 DIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQKD 288 Query: 292 KDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S+ S + N + + ++K E +NYE+++ Sbjct: 289 TSTDTSKGSTNTTESGTAANADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIKKH 348 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS---------- 400 L + ++ V V++ L A+ K A + ++ G Sbjct: 349 P-ALAKTNVVVWVDQQALNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTF 407 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 + GD +TI + FL+NQ + + + F + A Sbjct: 408 QNGD-VTIMPIQFLDNQAPVEKDTGKTPEPASKAWIWWLAGG---------LLFAIIAAG 457 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + I +K ++ A ++P D+ + L++R Sbjct: 458 IIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVVPEDHPDFNFQTDAFHLSEPELKAR-- 515 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +L M + + R A +++KW E Sbjct: 516 ---KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 547 >gi|225552378|ref|ZP_03773318.1| flagellar M-ring protein FliF [Borrelia sp. SV1] gi|225371376|gb|EEH00806.1| flagellar M-ring protein FliF [Borrelia sp. SV1] Length = 569 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 193/589 (32%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I I+ + F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D+ G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNRGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL+ L VD F + V +L+ + Y P Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREIDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + D++ Sbjct: 475 IASIVFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D + L + E AK++R W Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|195941355|ref|ZP_03086737.1| flagellar MS-ring protein [Borrelia burgdorferi 80a] gi|224533205|ref|ZP_03673805.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23] gi|226320592|ref|ZP_03796152.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805] gi|224511932|gb|EEF82333.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23] gi|226234011|gb|EEH32732.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805] gi|312149702|gb|ADQ29773.1| flagellar M-ring protein FliF [Borrelia burgdorferi N40] Length = 569 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 194/589 (32%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I I+ + F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL+ L VD F + V +L+ + Y P Sbjct: 242 RKLKLKYEAMLRSEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREIDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + D++ Sbjct: 475 IASIVFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D + L + E AK++R W Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|111115116|ref|YP_709734.1| flagellar MS-ring protein [Borrelia afzelii PKo] gi|216264082|ref|ZP_03436076.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1] gi|110890390|gb|ABH01558.1| flagellar basal-body rod protein [Borrelia afzelii PKo] gi|215980126|gb|EEC20948.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1] Length = 569 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 95/589 (16%), Positives = 196/589 (33%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I I+ F+ F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL L VD F + V +L+ + Y P Sbjct: 242 RKLKLKYEAMLRGEIDTALGKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLG---------RSADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKMDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + D++ Sbjct: 475 IASIIFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ L + E AK++R W Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|15594636|ref|NP_212425.1| flagellar MS-ring protein [Borrelia burgdorferi B31] gi|216264746|ref|ZP_03436738.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a] gi|218249820|ref|YP_002374814.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7] gi|221217640|ref|ZP_03589108.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a] gi|223888733|ref|ZP_03623324.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b] gi|224533718|ref|ZP_03674306.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a] gi|225549084|ref|ZP_03770059.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a] gi|225550193|ref|ZP_03771153.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a] gi|226321609|ref|ZP_03797135.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26] gi|3915695|sp|Q44912|FLIF_BORBU RecName: Full=Flagellar M-ring protein gi|1165275|gb|AAA85614.1| FliF [Borrelia burgdorferi] gi|1196318|gb|AAB51410.1| flagellar basal body rod protein [Borrelia burgdorferi] gi|2688175|gb|AAC66657.1| flagellar basal-body rod protein (fliF) [Borrelia burgdorferi B31] gi|215981219|gb|EEC22026.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a] gi|218165008|gb|ACK75069.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7] gi|221192317|gb|EEE18536.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a] gi|223885549|gb|EEF56648.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b] gi|224513011|gb|EEF83374.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a] gi|225369305|gb|EEG98758.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a] gi|225370310|gb|EEG99748.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a] gi|226232798|gb|EEH31551.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26] gi|312147990|gb|ADQ30649.1| flagellar M-ring protein FliF [Borrelia burgdorferi JD1] Length = 569 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 194/589 (32%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I I+ + F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL+ L VD F + V +L+ + Y P Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREIDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + D++ Sbjct: 475 IASIVFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D + L + E AK++R W Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|224534391|ref|ZP_03674969.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S] gi|224514493|gb|EEF84809.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S] Length = 569 Score = 209 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 92/589 (15%), Positives = 196/589 (33%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I ++ F+ L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVVLAFIFLIGLSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYILSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKIEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL L VD F + + +L+ + Y P Sbjct: 242 RKLKLKYEAMLRGEIDSALGKVLSVDRFMIARINVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNEY 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLG---------RSADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREMDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + + D++ Sbjct: 475 IASIIFSLLILMFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ L + E AK++R W Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|167770218|ref|ZP_02442271.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM 17241] gi|167667540|gb|EDS11670.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM 17241] Length = 530 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 97/565 (17%), Positives = 189/565 (33%), Gaps = 46/565 (8%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEV 57 M I D + + T L R + +I S +++ +N P L+ + Sbjct: 1 MNEKIKDGVTKVKTFWTGLPRKKKIIFTSSAAGIVVIAAVVALILNRPSGNQVLFPDMTR 60 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 + ++ L + + I+ +G + VP+ A +AAQG P S N Y+ F Sbjct: 61 EESQQVYAKLQDMGVQAEINRDGQVV-VPTEDWDNAIFEMAAQGYPKSEPN--YDFFLSN 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-----ARPT 172 + + + F Q E + + + GI +A V +P+ + + Sbjct: 118 SGWTKSEFEQRQVLKMQAEDRMRQILMGQDGIESADVSFSIPETSDYIWDQNNKEESTAA 177 Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGK 229 ++ +R + +A+++L A ++PNL +V V+D+ + + K Sbjct: 178 ITIKMRKGAELSPERVQAVKNLAAYSIPNLTADNVVVVDAATGVQMEAADDESASMFSDK 237 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 L + I IE NI + L+ GVD + EL+ D + P+ + + Sbjct: 238 RLEFERQIARGIEDNIIRILSPRYGVDGVTAVARVELDYDKMKTETRQLTPEDTGKGVMT 297 Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 ++ + E+N V + T +Y+I Sbjct: 298 HFEEQFSQNGQVAAEGLVGEENNTDVPKYPNQVGAGDGTTSDYSNSIDYDIGYVLTQIEK 357 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 L+ ++ VVVN D D E+ ++S + I I++T Sbjct: 358 GEPILKSATVGVVVN------------DSAFDDRKKEELTDLISKSVNIQPEN---ISVT 402 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++D+ E + +I L+ +L+ + L RR N A Sbjct: 403 NLDYPEPET-QQTGGAGEGDGAAGNSILPIIGVGALLLLLILIPIILLLLRRRKKNKVHA 461 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + + + + N AL S N + + Sbjct: 462 AEQALIDAEKERQAQMEREIAEHKLMLQNEALASKNVKEDAIMQE--------------- 506 Query: 530 RLLHMIEINEERFAKILRKWARSEI 554 + E N E A ++ R + Sbjct: 507 -VRTFAEQNPEITANLISSMLREDD 530 >gi|51598551|ref|YP_072739.1| flagellar MS-ring protein [Borrelia garinii PBi] gi|51573122|gb|AAU07147.1| flagellar basal-body rod protein [Borrelia garinii PBi] Length = 569 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 195/589 (33%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + L +I I+ F+ F L+ +E+ D Sbjct: 5 FTNFFASAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL+ L +D F + V +L+ + Y P Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + D++ Sbjct: 475 IASIMFSLLILAFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ L + E AK++R W Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|219685754|ref|ZP_03540565.1| flagellar M-ring protein FliF [Borrelia garinii Far04] gi|219672693|gb|EED29721.1| flagellar M-ring protein FliF [Borrelia garinii Far04] Length = 569 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 196/589 (33%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I I+ F+ F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL+ L +D F + V +L+ + Y P Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + D++ Sbjct: 475 IASVIFSLLILAFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ L + E AK++R W Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|167750730|ref|ZP_02422857.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702] gi|167656409|gb|EDS00539.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702] Length = 542 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 91/566 (16%), Positives = 208/566 (36%), Gaps = 42/566 (7%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+L F+ +SL + + + + + V I+ + +N Y +Y L+ Sbjct: 1 MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60 Query: 59 DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 + +++ A++E I D ++ +G SISVPS R+ L+ QG P S+ N +++++ Sbjct: 61 ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTA 173 T +++ +++ L+ + + I +IS + + V I MP+ ++ R + Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177 Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKS 230 + ++ E I LV ++P L+ ++++LDS GKLL+ E + Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERS 287 L+ + +Q ++ +N L V + + V + + Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYKDYTINVNVKLNYDNSKSEYTIYTPSVAEDGTSGGMI 297 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 +K+ V N + + + + +NT+ Sbjct: 298 ESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNTEIRQ 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + Y +++++ AV V++ + E ++ ++++ A G + + Sbjct: 358 LEKNGYSVDKITAAVTVDQINMLEAD------------KEQLREVIAFAIGADVAN---V 402 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 T+ + F+ N + + S + I L+ L L L L Sbjct: 403 TVANYPFVINGNNGTNGNGNTINRGGSVDWTVYIILLLGL--------LVLALLIVAILT 454 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 +AKK + + ++A D + ++L + S Sbjct: 455 SNAKKKKRAKARAKAAAAQAAAAQAAQESAALSFEPQPQPDEEFNIQHLDDYDDESKSAV 514 Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552 + N + A+++R ++ Sbjct: 515 LKKEIKDFSRTNPDVVAQLIRSMMKN 540 >gi|225569979|ref|ZP_03779004.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM 15053] gi|225161449|gb|EEG74068.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM 15053] Length = 536 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 101/579 (17%), Positives = 195/579 (33%), Gaps = 61/579 (10%) Query: 1 MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59 M I +L Q + +I + + I + +N Y L+ + + Sbjct: 1 MDKIKLKLGQLKDFLGKYSKKTKIIAGTAAVAVIAAAVIIALVLNHKDYTTLFTGVTEEE 60 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 +I L E+ +DF+ +NG I V + K R L +G P S Y++F + + Sbjct: 61 ATKIIGKLQESGVDFQYKENGD-ILVDEKVADKTRADLVYEGYPKSGFT--YDVFTENSG 117 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-----RKIGARPTAS 174 T +E ++ L+ I TI+ G+ A+V+I + + + + P+AS Sbjct: 118 GMTTDSEKETYKLYDLQDRIGATIRFFDGVKDAKVNIALKEEQKYVLEEDGEKAGTPSAS 177 Query: 175 VMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL- 231 V++ + A AI+ LVA +VP ++M +V V D G ++ N+ + G + Sbjct: 178 VVVTMESGESPSEKQAAAIQRLVAKSVPEMEMENVAVFDGNGIEVSVNKDGSSASGSNAT 237 Query: 232 -SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ------IREIVYDPDSKV 284 I Q I+ +I + L +F G +N R + ++NM+ D K Sbjct: 238 EEIAQLIEMQISKKVINVLGSFYGAENIRVSARGKVNMEKVIRESTTYTTPEKIDEKDKT 297 Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344 S + V + + + + + +Y +N Sbjct: 298 GIVSSESTTKDTVNGGGAGTGVAGSETNADTPEYNAGTDNNASGSASESATRDYLVNQVK 357 Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRRG 403 D LE L+++V +N + E+ +V ATGI + R Sbjct: 358 EQGELDTGVLEDLTVSVAINGKNAGN------------ISMNELRDLVGNATGIAAADRL 405 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + ITI + F E + + + + Sbjct: 406 EKITIVNAPFYEENADKDTKEVSNILKNIKDNLP-------------------------- 439 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + IL+ I + + + + + + Sbjct: 440 --VIAVAAVIAVVIIILAVILIRRRRKRRMEEEEELEDLLIPDVTEEIRKPEILNLKNEK 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR-SEIEDRYTQH 561 S++ + + N E A+++R W E + R Sbjct: 498 SRELRENVRDFADENPEISAQMIRNWLNGGEQDGRKADE 536 >gi|219684584|ref|ZP_03539527.1| flagellar M-ring protein FliF [Borrelia garinii PBr] gi|219671946|gb|EED29000.1| flagellar M-ring protein FliF [Borrelia garinii PBr] Length = 569 Score = 207 bits (525), Expect = 6e-51, Method: Composition-based stats. Identities = 94/589 (15%), Positives = 196/589 (33%), Gaps = 69/589 (11%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59 + + + + L +I I+ F+ F L+ +E+ D Sbjct: 5 FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 ++RIS L N+ + +S +G + K R L + L + + LFD ++ Sbjct: 64 LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 + +T F + I R++ + + I ++ + A V++VMP+ F++ ASV I Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181 Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230 S K E + L+ A+ L+ ++ ++D++G +L ++ K Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280 + + + I+ AL+ L +D F + V +L+ + Y P Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301 Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332 S + K + + P E N P ++ Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381 +E N +N K + + ++ +S+ + V+ + + G + Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 + I ++ ++ RGD+IT+ ++ F F S F + Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501 + L++ F A+ R + E K + + D++ Sbjct: 475 IASVMFSLLILAFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534 Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 D ++ L + E AK++R W Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565 >gi|291558199|emb|CBL35316.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium siraeum V10Sc8a] Length = 541 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 93/566 (16%), Positives = 207/566 (36%), Gaps = 42/566 (7%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+L F+ +SL + + + + + V I+ + +N Y +Y L+ Sbjct: 1 MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60 Query: 59 DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 + +++ A++E I D ++ +G SISVPS R+ L+ QG P S+ N +++++ Sbjct: 61 ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175 T +++ +++ L+ + + I +IS + + V I MP+ ++ P SV Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177 Query: 176 MIRAI--NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKS 230 + E I LV ++P L+ ++++LDS GKLL+ E + Sbjct: 178 KLDLKNDAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERS 287 L+ + +Q ++ +N L V + + V + + Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYKDYTINVNVKLNYDNSKSEYTIYTPSVAEDGTSGGMI 297 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 +K+ V N + + + + +NT+ Sbjct: 298 ESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNTEIRQ 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + Y +++++ AV V++ + E ++ ++++ A G + + Sbjct: 358 LEKNGYSVDKITAAVTVDQVNMLEAD------------KEQLREVIAFAIGADVAN---V 402 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 T+ + F+ N + + S + I L+ L L L L Sbjct: 403 TVANYPFVINGNNGTNGGGNTINRGGSVDWTVYIILLLGL--------LVLALLIVAILT 454 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 +AKK + + ++A D + ++L + S Sbjct: 455 SNAKKKKRAKARAKAAAAQAAAAQAAQESAALSFEPQPQPDEEFNIQHLDDYDDESKSAV 514 Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552 + N + A+++R ++ Sbjct: 515 LKKEIKDFSRTNPDVVAQLIRSMMKN 540 >gi|238924170|ref|YP_002937686.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Eubacterium rectale ATCC 33656] gi|238875845|gb|ACR75552.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Eubacterium rectale ATCC 33656] gi|291524899|emb|CBK90486.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium rectale DSM 17629] gi|291529040|emb|CBK94626.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium rectale M104/1] Length = 533 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 94/564 (16%), Positives = 194/564 (34%), Gaps = 47/564 (8%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 AILD++ ++K + +L S++ V I+ + ++ P L S+ + Sbjct: 7 AILDKITAWWKKFN---TKQRSVLISIVAVVIVALVILGVVISRPTQVELVEAQSASEAS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L + NI + + V S A + L G+P+ + + SF Sbjct: 64 TIKGVLEDNNISYEVDSK-LVFFVNKSDEVNAIMALGDNGIPAQAYSIDNV---TDGSFS 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180 T ++ LE ++ ++ S + A V I MPD + K TA+V + Sbjct: 120 TTEADKQKKYQVYLEDKLKDHLEKQSYVNEASVDITMPDKDGTILKSKEEATAAVTLGLK 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237 + A AI LVA A+ N +T++D +L + G LS Q + Sbjct: 180 DSITDDQAYAIARLVATALGNDTTKGITIIDKKANVLYSGGDSDTSAGLATSQLSYKQKL 239 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQR 296 + +++ + K L + N + +++ + + Y PD + + + S+ + Sbjct: 240 EEQVKNEVKKTLESSNIFSNIEVGMNLDIDFSKTETAQKNYTLPDGQTDTGLLDSESNYQ 299 Query: 297 S-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 S T+ + + N + S + + Y + K + +D ++ Sbjct: 300 SDATNGQAAVPGTDSNSDDTTYTTQDGTPS--ESSITDNDKKYLNDEKITTSKNDGGSIK 357 Query: 356 RL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 SI VV + ++ + + D+ E + + D +T Sbjct: 358 YDSSSITVVATRYKVYDESTLEKNGKLKDTSWEEYKAKHADPVKVTDVDQDLVTSVQNAT 417 Query: 414 LENQLFNSGTVQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 +Q+ Q F+D S R + ++ + ++ L+ F+ + R ++ Sbjct: 418 GISQISFLVYEQPEFVDKASGVRSLSDILQIAITVLIFALLGFVVFKSTRSSEEEPKEEE 477 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 V + I ++ L + Sbjct: 478 LSVDSLLEQTAENNEP----------------------------LEDIGYNEKTETRLLI 509 Query: 532 LHMIEINEERFAKILRKWARSEIE 555 ++ N E A++LR W + E Sbjct: 510 EKFVDENPEAAAQLLRNWLNEDWE 533 >gi|291532064|emb|CBK97649.1| flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) [Eubacterium siraeum 70/3] Length = 542 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 91/566 (16%), Positives = 208/566 (36%), Gaps = 42/566 (7%) Query: 3 ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+L F+ +SL + + + + + V I+ + +N Y +Y L+ Sbjct: 1 MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60 Query: 59 DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 + +++ A++E I D ++ +G SISVPS R+ L+ QG P S+ N +++++ Sbjct: 61 ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTA 173 T +++ +++ L+ + + I +IS + + V I MP+ ++ R + Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177 Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKS 230 + ++ E I LV ++P L+ ++++LDS GKLL+ E + Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ---IREIVYDPDSKVERS 287 L+ + +Q ++ +N L V + + V + + Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYKDYTINVNVKLNYDNSKSEYPIYTPSVAEDGTSGGMI 297 Query: 288 IRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 +K+ V N + + + + +NT+ Sbjct: 298 ESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTIKGDDDNQYYYQNSITVKRLVNTEIRQ 357 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406 + Y +++++ AV V++ + E ++ ++++ A G + + Sbjct: 358 LEKNGYSVDKITAAVTVDQINMLEAD------------KEQLREVIAFAIGADVAN---V 402 Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466 T+ + F+ N + + S + I L+ L L L L Sbjct: 403 TVANYPFVINGNNGTNGNGNTINRGGSVDWTVYIILLLGL--------LVLALLIVAILT 454 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 +AKK + + ++A D + ++L + S Sbjct: 455 SNAKKKKRAKARAKAAAAQAAAAQAAQESAALSFEPQPQPDEEFNIQHLDEYDDESKSAV 514 Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552 + N + A+++R ++ Sbjct: 515 LKKEIKDFSRTNPDVVAQLIRSMMKN 540 >gi|289678988|ref|ZP_06499878.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5] Length = 395 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 68/410 (16%), Positives = 136/410 (33%), Gaps = 54/410 (13%) Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHE 240 AI +LVA +VP L +TV+D G LL+ + GK + ++ Sbjct: 2 REPSQVLAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 61 Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + + L LG D +++ V A ++ + ++PD RS + + QRS +S Sbjct: 62 LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSS 120 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSL---------------------------------- 326 N P + Sbjct: 121 SSGGVPGALSNQPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 180 Query: 327 -ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSY 384 + + N+E++ T +L RLS+AVVV+ T G + + Sbjct: 181 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 240 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 LA ++V A G ++ RGD++++ ++ F + F ++ V Sbjct: 241 LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAV 296 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 ++ L++ F L + K+ G G + ND ++L Sbjct: 297 GVIFILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGP 353 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + + ++ + R A+++++W ++ Sbjct: 354 QSILLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 395 >gi|16802755|ref|NP_464240.1| flagellar MS-ring protein [Listeria monocytogenes EGD-e] gi|47095279|ref|ZP_00232890.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a F6854] gi|224498795|ref|ZP_03667144.1| flagellar MS-ring protein [Listeria monocytogenes Finland 1988] gi|224501982|ref|ZP_03670289.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-561] gi|254829370|ref|ZP_05234057.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165] gi|254830296|ref|ZP_05234951.1| flagellar MS-ring protein [Listeria monocytogenes 10403S] gi|254900051|ref|ZP_05259975.1| flagellar MS-ring protein [Listeria monocytogenes J0161] gi|254911396|ref|ZP_05261408.1| flagellar MS-ring protein [Listeria monocytogenes J2818] gi|254935723|ref|ZP_05267420.1| flagellar MS-ring protein [Listeria monocytogenes F6900] gi|255028428|ref|ZP_05300379.1| flagellar MS-ring protein [Listeria monocytogenes LO28] gi|284801043|ref|YP_003412908.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578] gi|284994185|ref|YP_003415953.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923] gi|16410102|emb|CAC98791.1| lmo0713 [Listeria monocytogenes EGD-e] gi|47016350|gb|EAL07272.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a F6854] gi|258601784|gb|EEW15109.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165] gi|258608307|gb|EEW20915.1| flagellar MS-ring protein [Listeria monocytogenes F6900] gi|284056605|gb|ADB67546.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578] gi|284059652|gb|ADB70591.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923] gi|293589334|gb|EFF97668.1| flagellar MS-ring protein [Listeria monocytogenes J2818] Length = 550 Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 84/540 (15%), Positives = 181/540 (33%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAEPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + L+F V + + R+ + + E Sbjct: 445 IWWLAGGLLFAVIAAGIITYIILLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQ 504 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 D L + +L M + + R A +++KW E Sbjct: 505 TDAFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|255025681|ref|ZP_05297667.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-003] Length = 550 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 84/540 (15%), Positives = 181/540 (33%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSAA-------------TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEAAAAPIFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAEPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + L+F V + + R+ + + E Sbjct: 445 IWWLAGGLLFAVIAAGIITYIILLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQ 504 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 D L + +L M + + R A +++KW E Sbjct: 505 TDAFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|229160710|ref|ZP_04288702.1| Flagellar M-ring protein fliF [Bacillus cereus R309803] gi|228622725|gb|EEK79559.1| Flagellar M-ring protein fliF [Bacillus cereus R309803] Length = 524 Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 80/561 (14%), Positives = 195/561 (34%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKIRNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS L++ N K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKPEEVSVIDSKKGLISKGADAANTNSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVTVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + + L+ I + + L+ FL ++ + Sbjct: 405 VQF---DQPKAEGPKKQEESGLNWWLIGGITGGLLALVGLVWFFLARRKKKKEEEEYEEY 461 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 E + + + + D + Sbjct: 462 LVEDEVAA--------------------SSESIMEIPEEKIEPEPKPELEKPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|317133489|ref|YP_004092803.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3] gi|315471468|gb|ADU28072.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3] Length = 528 Score = 203 bits (515), Expect = 8e-50, Method: Composition-based stats. Identities = 90/559 (16%), Positives = 190/559 (33%), Gaps = 43/559 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + T L ++L V++ I+ +AA + Y+ +Y L ++ + Sbjct: 5 LKKIAAGLNRFWTGLSAKVRVLLVIVVVGAIVGAVAANMLLTQTQYELIYSGLSDAESGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L I +++ +G+SI V S+ +AR+ LA G P ++ N Y +++ N++ + Sbjct: 65 IVADLQTRGIKYKL--DGNSIYVDKSVADQARMELAVDGYPQTTLN--YSVYESGNNWAM 120 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---- 178 T ++ + ++ + TIQ+I G+ A V I + ++ + + + ++ Sbjct: 121 TDKDKQQLALYQIQDRLQSTIQTIPGVKNAIVTITQGNDDTYVLESDKVSPTASVKLTLT 180 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAI 237 K I ++V+ +V L +VTV DS G L + L++ + Sbjct: 181 PGTTLTQKQVTGIVNIVSHSVSGLSADNVTVADSDGNTLNNTGDDLSGATSDQLALRVQV 240 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY---DPDSKVERSIRLSKDA 294 + EI + L G N + + A L+ T Y D S+ S Sbjct: 241 ESEIRQKVLSVLGPVYGAANVQVSPAAILDFTTTTTNTTTYSGPDNGQGFPSSVSSSITV 300 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 + V V P ++ + Y N + Sbjct: 301 SGGTGTASGGTVGVNGAQPAYPTSGSQTSSLSGTVTQQNTNTTYLYNQVQQQVQDKGGSI 360 Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 + L+I +++N ++ + V+ A G + + + M F Sbjct: 361 KNLTIGIMLNSANQAIAGLDPT----------QVQQFVAYAVGTAPQN---VNVQLMRFA 407 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + +SG + T++ +++ L L L R A + E Sbjct: 408 SSSAVSSGGKGSASGTSGLGSPTTLLTIAGIGAAAVVLILLLLFFLLRGRKRKKALQEEA 467 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 ++ + + S L +++ ++ Sbjct: 468 EAQAEQAQA------------------AQPVKPGPPMSAELAQKLDEMPDNPVKKQIEDF 509 Query: 535 IEINEERFAKILRKWARSE 553 + E A++LR W + Sbjct: 510 TDSKPELVAQLLRNWLKDN 528 >gi|227873553|ref|ZP_03991796.1| flagellar M-ring protein FliF [Oribacterium sinus F0268] gi|227840599|gb|EEJ50986.1| flagellar M-ring protein FliF [Oribacterium sinus F0268] Length = 557 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 95/574 (16%), Positives = 199/574 (34%), Gaps = 51/574 (8%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63 + +L + +++ ++ + + I+A + +V I + + Y L+ L + +I Sbjct: 1 MQKLKEMWQNLSAKSKKLLGIIAGITVVVIAVAVFLLARGQKTEYQTLFSSLSQGEAQQI 60 Query: 64 SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123 L E N+ + ++ VPS V R L ++G P S Y+++ + T Sbjct: 61 VSLLQEQNVPYLYDGKSGALKVPSESVDTLRAQLLSKGYPKSGFA--YDMYIGNSGLMTT 118 Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA- 179 ++ + L+ + TI+ G+ A+V I ++ + + +ASV++ Sbjct: 119 ESDKKQYTLYDLQDRLGATIRLFDGVRDAKVTIAEGTDQTYAIEDENPVQASASVVVTME 178 Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235 K+AEAI++L+A +V ++ +V+V D+ A + + G ++ Sbjct: 179 EGQSLSEKNAEAIKNLIARSVKGMNFTNVSVFDAGTMEEVAADAGDSASGSGTSMANLTT 238 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK--- 292 +++ I NI + L G +N +V LNM Y K E + + Sbjct: 239 TVENNIANNIKRVLGKIYGGENLAVSVKGTLNMAKLIQENTQYTVPEKTEATDKRGLLSN 298 Query: 293 -----DAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346 + + + N + + +N + N Sbjct: 299 EEVAGENAGNSGENAAGVAGADANADTPRYTTQNGTATTTDNYSNSSATREWLYNVLKEQ 358 Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-RRGDT 405 LE S+A+V+N + + +V+ A GI D Sbjct: 359 KEIAPGVLEDASVAIVINTDDNSIPESD-------------LINLVADAAGIKRDEAADK 405 Query: 406 ITIT-SMDFLENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRR 462 ITI S++ Q L F +I A V +L+ + + R+ Sbjct: 406 ITILRSLNKTAVQQTTEEKKPAEEPKTLLNQFPLWALIGAAVSAFLLILILLILILRGRK 465 Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522 + + E+ + LS + +T +++ Sbjct: 466 KKKLKKLAQEEMENAAALSVEQPTDEITPVEEVDEDELTAEGKMAHGMK----------- 514 Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556 + + N + AK+++ W R E ++ Sbjct: 515 ----LKKSIGEFTDQNPQVVAKLIQSWMREEEQN 544 >gi|255594469|ref|XP_002536098.1| Flagellar M-ring protein, putative [Ricinus communis] gi|223520885|gb|EEF26286.1| Flagellar M-ring protein, putative [Ricinus communis] Length = 263 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 126/264 (47%), Gaps = 7/264 (2%) Query: 26 ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85 V+ + I + + + Y ++ E + + L ++ +RI + + V Sbjct: 1 MLVLAIGITAAVMLYMWNDQAGYKPVFGAHEKVAASDMMSVLDAEHVPYRIHPDSGQVMV 60 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P+ +GK R+ LAA+G+ ++ +G EL DK + G++ F+Q++ R LEGE+A++I + Sbjct: 61 PTGQLGKVRMLLAAKGV-TAQLPAGLELMDKNDPLGVSQFVQDVRFRRGLEGELAQSILT 119 Query: 146 ISGIVAARVHIVMPDMGSFRK---IGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 + I +ARVH+ + SF + + V ++ + AI ++V+ +V L Sbjct: 120 LDAIASARVHLAIAKSSSFVANDGDKSSASVVVAVKPGRTLSNEQIAAIVNMVSGSVAGL 179 Query: 203 DMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259 V+++D G L++ + + + + Q E+ N+ L LG DNF+ Sbjct: 180 APARVSLVDQNGNYLSSRVDLTEGFDGAAQGDAAAKRYQDEVRTNVAGLLGPVLGADNFK 239 Query: 260 SAVVAELNMDTQQIREIVYDPDSK 283 +V A+++ D + + Y D K Sbjct: 240 VSVTADVDNDKVEETQEKYGADPK 263 >gi|168334480|ref|ZP_02692651.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype B'] Length = 533 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 84/563 (14%), Positives = 185/563 (32%), Gaps = 41/563 (7%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 I + T+L + + + I+ +AA FF +SP LY L++ ++ Sbjct: 4 TITQVSNNLTERWTNLPSRQKIQIGVGAGAIIVAIIAAVFFFSSPQTAILYQNLDMEAIS 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 +I L NI + + +G +I V + A+I L + +P + NS Sbjct: 64 QIDEVLGANNITYELI-DGRTIQVNEEDLNTAKIILTRENVPRGDYTFYDAI---TNSMS 119 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAI 180 T + + + ++ + + GI A V + +P + SF +ASV++ Sbjct: 120 TTEAEKRTKLIYLKQVDLENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLH 179 Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQH 239 E I L++ AV NL + ++T+LDS +L + + S+ + + Sbjct: 180 RQISDNQIEGIARLLSNAVDNLKLENITILDSDSNVLFSGDEFGEMTASDQQSLKSSAEK 239 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI---VYDPDSKVERSIRLSKDAQR 296 +I + L+ D + L+ D + + DS+ + S+ Sbjct: 240 DIVNKLTTLLSPIY--DEVAISPNLILDFDYFEQTKEEYTTPITDSQTGLVDQESRRNYE 297 Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + Q A ++ N+ V + S + Y+ N + ++ Sbjct: 298 ATNIQDGFAPGLDPNVEDVPEYVAGNELSGNYEGGTSDII-YKHNKTLSNEIKNIGTIDY 356 Query: 357 LSIAVVVN--KGRLTEVLGRSADQGKIDSYLA-EINKIVSAATGINSRRGDTITITSMDF 413 + +V +N K + + ++ ++ V+ + D I Sbjct: 357 NNSSVAINLTKYNVYDEALLEDTLPDDQTWAEFKLANDVTNILVVEQATIDAIK-MGAGL 415 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + + + VI ++ L ++ + + + + + + E Sbjct: 416 ENVAVIAYEKPVFIDKEPFTLQTEDVIPYILLLALGAVIVVVMIRFRKPVEEVVTEDEFE 475 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 ++ P + I ++ ++ Sbjct: 476 FEDLLPVAGPEEEEE-------------------------DSLQDIELKEVIETKAKIDK 510 Query: 534 MIEINEERFAKILRKWARSEIED 556 I+ E A +LR W + D Sbjct: 511 FIDEKPEAVAGLLRNWLEEDWGD 533 >gi|187918165|ref|YP_001883728.1| flagellar MS-ring protein [Borrelia hermsii DAH] gi|119861013|gb|AAX16808.1| flagellar M-ring protein FliF [Borrelia hermsii DAH] Length = 568 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 88/597 (14%), Positives = 193/597 (32%), Gaps = 72/597 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I KS + + + L I+ + F L+ + + Sbjct: 1 MNNFITKFFASVNKSFKKASIVQRVAFGVIFLFIILALIFLVGFSTRKQGIALF-GVGIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D +++I L N+ + I+ +G + K R L + L + + LFD Sbjct: 60 DQYLLDKIVQRLDRENVGYTITVDGKIYLSDENTSKKMRAILVREELVPVHMDP-WSLFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + + R++ + + I ++ + A +++VMP+ F++ ASV Sbjct: 119 -IDRWTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226 I S K E + L+ A+ L+ ++ ++D+ G +L ++ Sbjct: 178 RITPKPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTILNDFSNVDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + ++ I+ AL+ L V F + V L+ Q Y P Sbjct: 238 AEKERKLKLKYESMLKDEIDSALSKVLSVGRFMIARVNVTLDTSRQTTESKEYAPIEIEP 297 Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 S ++ K + P E N P + Sbjct: 298 QDPKVSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDLSDIIG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377 +++ +E N +N K + + ++ +S+ + ++ + Sbjct: 355 SNEFKEIKNVALNEKKSLSEKEPARVAGISLGIFIDGVWDFVYDESGKFVIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + D L I ++ ++ RGD+IT+ ++ F F + Sbjct: 415 KPISDEALKNITDVLQSSFEYKPERGDSITVRNIAFDRVNEFRKIDEA-----YFASEKF 469 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + V L+ L+ + + + E + + + + D Sbjct: 470 NFVVFAVSLIFAFLILIFTIFFIVSRELERKRRLREEEFARQAHLRRQQALMDSDDIGVD 529 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ +D + L + E AK++R W + Sbjct: 530 DVVGGLREEDELQSNAEL------------------LAREKPEDVAKLIRTWIVKNV 568 >gi|119953090|ref|YP_945299.1| flagellar MS-ring protein [Borrelia turicatae 91E135] gi|119861861|gb|AAX17629.1| flagellar M-ring protein FliF [Borrelia turicatae 91E135] Length = 568 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 92/597 (15%), Positives = 195/597 (32%), Gaps = 72/597 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I K + + + L I+ F+ F L+ + + Sbjct: 1 MNNFITKFFASVNKKFQKASMVQKVAFGVIALFIILAFIFLIGFSTKKQGVALF-GVGIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D ++RI L ++++ I+ +G +M K R L + L + + LFD Sbjct: 60 DQYLLDRIVQRLDRESVEYIITADGKIYLSDENMSKKMRAILVREELVPVHMDP-WSLFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + + R++ + + I ++ + A +++VMP+ F++ ASV Sbjct: 119 -IDRWTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226 I S K E + L+ A+ L+ ++ ++D+ G +L ++ Sbjct: 178 RITPKPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTVLNDFSNLDGIDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL+ L VD F + V L+ Q Y P Sbjct: 238 AEKERKLKLKYESMLRDEIDSALSKVLSVDRFMIARVNVTLDTSRQTTESKEYAPIEIEP 297 Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 S ++ K + P E N P + Sbjct: 298 QDPKVSYNTRKVSDSTLLSSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDLSDIIG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377 +++ +E N +N K + ++ +S+ + ++ + Sbjct: 355 SNEFKEIKNVALNEKKSLNEKEPARIAGISLGIFIDGVWDFVYDESGNFIIENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + D L I ++ ++ RGD+I I ++ F F D S Sbjct: 415 KPISDEALKNITDVLQSSFEYKPERGDSIAIRNVAFDRVNEFRKIDE-----DYFSTEKF 469 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + V ++ LL+ + + + E + + + + D Sbjct: 470 KFLIFTVSIIFALLILIFTVFFIVSRELERRRRLREEEFSRQAHLRRQQALMDSDDIGVD 529 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ +D + L + E AK++R W + Sbjct: 530 DVVGGIREEDELQSNAEL------------------LAREKPEDVAKLIRTWIVKNV 568 >gi|332297609|ref|YP_004439531.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168] gi|332180712|gb|AEE16400.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168] Length = 568 Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 101/598 (16%), Positives = 210/598 (35%), Gaps = 75/598 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M + + + + +IL +I V I + F P L+ + ++ Sbjct: 1 MNEWLKKLVSSIKELWAKWTLIQKIILFGIIAVVIAALVFMLRFSAKPATVPLF-NVAIT 59 Query: 59 DVNR---ISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELF 114 DV+ I LS+ N++ ++ G ISV + R L + L ++ + + LF Sbjct: 60 DVSARDNILYRLSQENVEAEVNAAG-VISVKDEQTARRMRSVLVREDLVPTNVDP-WALF 117 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + +T F + + R++ + + I+++ I +A V I +P+ F TAS Sbjct: 118 D-TERWTITDFERNVNLQRSITQMVKQHIEALDDIDSANVVITLPERTLFASDQNPTTAS 176 Query: 175 VMIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---- 226 V+I S K + I+ L+ AV L ++T+ DSTG+++ E Sbjct: 177 VIIYPKPGSDIADNKKKIQGIQKLLLRAVEGLKEENITIADSTGRIVNDFEGMAASERVD 236 Query: 227 -LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVY------ 278 + K +++ ++ E ++ K+L G D R + +++M +Q+ Y Sbjct: 237 IVAKEQKLIKQLEMEYRASVLKSLQQIFGTDRVRDLNIKIDMDMSKKQVAGTEYSPIVIK 296 Query: 279 --DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 +P++ S PE VE P V Sbjct: 297 ADNPNTPYDDSELRDYLPISSETVTKVWTGTGYNPEGPAGVEGQNPPVYSDMS---NLYG 353 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR------------S 375 +++ + N INTK ++R++++V ++ + Sbjct: 354 KSEETGVKQNNVINTKEYQEEKSP-SIDRVTVSVNIDGTWRRTYDDKGQLVLNPNGTIAR 412 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + L+ K+V A G N RGD++T+ ++ + F I ++ Sbjct: 413 EYVPVDSAVLSSAAKLVQDAIGYNRNRGDSVTVQNIQYDRTAQFEEED----MAYIRAQQ 468 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 I ++ + +L+ F+ + R + E + + + Sbjct: 469 QRKTIMLVIAGIAVVLLAFMVFRFISRELERRRRLREEEILRRNQMEREKT--LWEAEQA 526 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + + M + + E A ++R W E Sbjct: 527 GMEVTMS----------------VEERHRAELQENAITMAKEHPEDVAMLIRTWLMEE 568 >gi|323174683|gb|EFZ60303.1| flagellar M-ring protein FliF [Escherichia coli LT-68] Length = 380 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 76/403 (18%), Positives = 150/403 (37%), Gaps = 43/403 (10%) Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSL 231 +V + AI HLV++AV L G+VT++D G LLT R++ L Sbjct: 1 MTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQL 60 Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 ++ I+ I L+ +G N + V A+L+ +++ E Y P+ ++ S Sbjct: 61 KYASDVEGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRS 120 Query: 292 K---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKK 332 + ++++S + P N P ++ S + ++ Sbjct: 121 RQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQR 180 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 E SNYE++ T + ++RLS+AVVVN L + + + +I + Sbjct: 181 NETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLT 236 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 A G + +RGD++ + + F + ++ A +L+ L+ Sbjct: 237 REAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVA 292 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 L A+R V ++ ++ ++D Sbjct: 293 WLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQ 340 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 341 RRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 380 >gi|307264866|ref|ZP_07546428.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920124|gb|EFN50336.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 253 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 14/252 (5%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +QL F+ + + + L + ++ + + VN P+Y LY L + D Sbjct: 7 NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63 Query: 62 RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119 + L I ++IS++G++I VP+ + R+ LA +G+P G+ D NS Sbjct: 64 AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASV 175 T + + L+ EI ++++I G+ A V+IV+PD +F A + Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIV 234 ++ + I V+ +V L +VTV+D+ GK+LTA + ++ Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239 Query: 235 QAIQHEIEMNIN 246 + + + Sbjct: 240 KKFKKTYKTAFK 251 >gi|299822289|ref|ZP_07054175.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601] gi|299815818|gb|EFI83056.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601] Length = 554 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 90/578 (15%), Positives = 204/578 (35%), Gaps = 59/578 (10%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + + L + + V + +A + L+ L + +++ Sbjct: 1 MTRIKTMYSKLKNWHKVAILVGFFVIVT--VALLYMNQPSTKVTLFKNLSETSQTQVTDE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS-- 124 L + +D+ I NG I V S+ R + G+P + ++ G ++ +S G + Sbjct: 59 LGKIGVDYTIDKNGD-ILVDKSVEKLVRDKMEEDGIPYTGTD-GNDILLN-SSLGASEED 115 Query: 125 --FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181 +++ LE EI ++ ++ + +A V + MP+ S + + +A+V I+ Sbjct: 116 KKMQEQVGTKANLEKEILQSYSNV--VDSATVQMTMPESDSIFEEASQKGSAAVTIKTKG 173 Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----NEMERNILGKSLSIV 234 + I+ V+AA+PN++ +V V+DS +++ + + + I Sbjct: 174 QMSLSTAQVQGIQRTVSAAIPNINAEEVAVIDSKRGVVSDSATTAKDEGSSAYKNEVDIQ 233 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 AI +I+ +I L++ + NFR +N D + + P RS + Sbjct: 234 DAIGKDIKTDIEDTLSSIFALKNFRVNTNVTVNFDEIKQKTEK-YPRDGKVRSEQKDSTT 292 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354 +S S +++ T S ++K E +NYE+++ L Sbjct: 293 DKSTGSAGQASGTESNADVPNYTENGGNSDSTYTSEKNSETTNYELDSTMQEIKKHP-AL 351 Query: 355 ERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD------ 404 + ++ V V++ L ++ + G + G + D Sbjct: 352 AKTNVVVWVDQNTLDANRVDMNEFTKAVGVAAGLTPNMTDPNGDGGGNANANADGNGTNQ 411 Query: 405 ----------TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 +TI + FL++ + + + + + L+ L+ +V + Sbjct: 412 EVFDGTFKNGEVTIMPITFLKDDTAAPTAKPAAKPASHAWVWWILGSTLLLLIAGGIVFY 471 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 + + E + +SP P+ I D+ + R Sbjct: 472 IIW-------LKRKEQIEEAIAEDYISPEEALVEKELSEQPDFQIDPDAMTEPSILTRR- 523 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + ++ + + + R A I++KW Sbjct: 524 ----------ENLKEKISDLAKEDPGRAAAIIQKWLNE 551 >gi|228952126|ref|ZP_04114221.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807658|gb|EEM54182.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 524 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 197/568 (34%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L ++ Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLLARRKRKKE 454 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + E + + Sbjct: 455 EEEYEEYLVEEEIAASNESILEIPE--------------------EKIVPEPKPEPEEPK 494 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 D ++ + + E AK+++KW Sbjct: 495 EPTLDEQVQDATKEHVEGTAKVIKKWLN 522 >gi|46906964|ref|YP_013353.1| flagellar MS-ring protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880230|gb|AAT03530.1| flagellar M-ring protein FliF [Listeria monocytogenes serotype 4b str. F2365] Length = 550 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNPTPAEEDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|320535381|ref|ZP_08035495.1| flagellar M-ring protein FliF [Treponema phagedenis F0421] gi|320147783|gb|EFW39285.1| flagellar M-ring protein FliF [Treponema phagedenis F0421] Length = 571 Score = 197 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 99/596 (16%), Positives = 207/596 (34%), Gaps = 72/596 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I + + + L+LA VIL I+ + ++P L Sbjct: 5 MNEWIKKTGTKLKELWGKWSVVQKLVLAGVILAAIIGMAVLFTWSSAPTTVPLIDVPISD 64 Query: 59 DVNR--ISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115 + R I + L+E NI +S G ISVP + R L + L + + + +FD Sbjct: 65 EAAREKIILRLNEENISASVSATGL-ISVPDEKTARRMRSILIREDLIPKNVDP-WAIFD 122 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 V + T F +++ RA+ + I+++ + A V I +P+ F+ TASV Sbjct: 123 -VERWTRTDFERKVDVRRAINKMVTDHIKALDDVDDANVIINVPEDTLFKADQKPITASV 181 Query: 176 MIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--- 228 ++ S ++ + I+ L+ AVP L ++T+ DS K+L E +++ Sbjct: 182 VLFTKPGSDIETDRKKIQGIQKLLKLAVPGLLDENITIADSNAKILNDFEGMKDMDRLTL 241 Query: 229 --KSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDPD---- 281 K ++ ++ + E+ I L G D R + +++M + + Y P Sbjct: 242 IEKQQKMIAKLETQYEIKILTLLQKTYGKDRVRDLNIKIDMDMSEKTAQTTKYLPTEIRP 301 Query: 282 -------------SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + + + PE VE P L Sbjct: 302 DNPETPWDDSEIVPSITAISETATTTWQGTGLTPEGPAGVEGQTPPAYKDMT---NQLGM 358 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377 +++ + I+ I+ L R +++V ++ + Sbjct: 359 SNQSIVKRQEAISKSEISEVISP-VLGRRTVSVNIDGEWRKKRDDKGNLVISEGRIEREY 417 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 L E + V A G ++ R D+I++ ++ F F + ++ R+ Sbjct: 418 IPISPEELQEATRAVQNAIGYDANRKDSISVLNIRFDRVAEFEA--EDAAYFRAQQRNMI 475 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 +I+ LL+ F+ + + + Sbjct: 476 ILISLG--GFAILLLIFILYRII------------------SRELERLRRLREEDELRKA 515 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +A +++ + ++ ++ + + +++M + E A ++R W E Sbjct: 516 QMAREAALRAAEMNNIDVAMSVEERKRLELQENVINMAREHPEDVALLIRTWLMEE 571 >gi|16799796|ref|NP_470064.1| flagellar MS-ring protein [Listeria innocua Clip11262] gi|16413173|emb|CAC95953.1| lin0721 [Listeria innocua Clip11262] Length = 550 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 85/540 (15%), Positives = 191/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S ++ N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKI-------------VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + + GD +TI + FL+NQ Sbjct: 386 TPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAEPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 ++ + + F + A + I +K ++ A + P Sbjct: 445 VWWLVGS---------LLFALIAAGIIAYIIFLKRKEQIEEALEAEEKDFIPAEEAIVNP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|119503663|ref|ZP_01625746.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] gi|119460725|gb|EAW41817.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] Length = 243 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 6/241 (2%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 + +L + TR + L + + L + + P + LY + +D Sbjct: 4 NPILNRVSGFAAQPVTRQMALLIGMAASVALGVGVIQWAMKPDFQPLYGAMSPADNATAV 63 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L I + ++ +SVPS + +AR+ LA++G P G+E + GL+S Sbjct: 64 SLLQANGIPYTMAGGSGLLSVPSDQIPQARMALASEGFPRGGG-VGFESLYQEQEMGLSS 122 Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182 FM++ RA+E E+ARTI ++ + ARVH+ +F + G P+ASVM+ Sbjct: 123 FMEQARYNRAVEAELARTISAMDSVKGARVHVAASKQSAFIRRGQEPSASVMVSLYPGRG 182 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQH 239 + I HLVA+++P L V+V+D GKLL++ + E N + I Q ++ Sbjct: 183 LSERQLAGIVHLVASSIPELQASKVSVVDQAGKLLSSQDGEDNDFGYTSEQFRIAQQLED 242 Query: 240 E 240 Sbjct: 243 S 243 >gi|313624697|gb|EFR94654.1| flagellar M-ring protein FliF [Listeria innocua FSL J1-023] Length = 549 Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats. Identities = 85/539 (15%), Positives = 191/539 (35%), Gaps = 46/539 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S ++ N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKI------------VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 + + GD +TI + FL+NQ Sbjct: 386 TPNMTTEEAGEGGEAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAEPASKAWV 444 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 ++ + + F + A + I +K ++ A + P Sbjct: 445 WWLVGS---------LLFALIAAGIIAYIIFLKRKEQIEEALEAEEKDFIPAEEAIVNPE 495 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 549 >gi|313610108|gb|EFR85433.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL F2-208] Length = 550 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLTEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|328467278|gb|EGF38358.1| flagellar MS-ring protein [Listeria monocytogenes 1816] Length = 544 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 27 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 85 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 86 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 142 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 201 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 202 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 261 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 262 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 320 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 321 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 379 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 380 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 438 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 439 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 489 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 490 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 544 >gi|229058380|ref|ZP_04196764.1| Flagellar M-ring protein fliF [Bacillus cereus AH603] gi|229132559|ref|ZP_04261408.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196] gi|228650905|gb|EEL06891.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196] gi|228719889|gb|EEL71479.1| Flagellar M-ring protein fliF [Bacillus cereus AH603] Length = 526 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 82/561 (14%), Positives = 200/561 (35%), Gaps = 53/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L A +F Y +Y L +D I+ Sbjct: 1 MEKIKNVFQSLKTWHKLVIGAALLAI--ATGALLYFTLPDKYVVVYQNLNDTDKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + I A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ + S M + I A + + L+ FL Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 K + + + ++ ++ + D + Sbjct: 447 ---ARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPEPVEPSEPTLDDQ 503 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 504 VQEATKEHVEGTAKVIKKWLN 524 >gi|313620042|gb|EFR91558.1| flagellar M-ring protein FliF [Listeria innocua FSL S4-378] Length = 550 Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 85/540 (15%), Positives = 191/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSQEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S ++ N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKI-------------VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + + GD +TI + FL+NQ Sbjct: 386 TPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAEPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 ++ + + F + A + I +K ++ A + P Sbjct: 445 VWWLVGS---------LLFALIAAGIIAYIIFLKRKEQIEEALEAEEKDFIPAEEAIVNP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|226223344|ref|YP_002757451.1| flagellar basal-body M-ring protein FliF [Listeria monocytogenes Clip81459] gi|225875806|emb|CAS04509.1| Putative flagellar basal-body M-ring protein FliF [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 550 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEEDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|290894011|ref|ZP_06556986.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071] gi|290556457|gb|EFD89996.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071] Length = 550 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 84/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-------- 380 ++K E +NYE+++ L + ++ V V++ L + A+ K Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 381 -----IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + A+ + + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGETAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|47091676|ref|ZP_00229472.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b H7858] gi|254824007|ref|ZP_05229008.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194] gi|254932007|ref|ZP_05265366.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262] gi|255521223|ref|ZP_05388460.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-175] gi|300764526|ref|ZP_07074519.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017] gi|47019995|gb|EAL10732.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b H7858] gi|293583558|gb|EFF95590.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262] gi|293593234|gb|EFG00995.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194] gi|300514880|gb|EFK41934.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017] gi|328475674|gb|EGF46423.1| flagellar MS-ring protein [Listeria monocytogenes 220] gi|332311137|gb|EGJ24232.1| Flagellar M-ring protein FliF [Listeria monocytogenes str. Scott A] Length = 550 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|116872102|ref|YP_848883.1| flagellar MS-ring protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740980|emb|CAK20100.1| flagellar M-ring protein FliF [Listeria welshimeri serovar 6b str. SLCC5334] Length = 550 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 80/538 (14%), Positives = 183/538 (34%), Gaps = 43/538 (7%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG--IVAARVHIVM 158 G+P + G ++ +S G + +++ + + + I G + +A V + + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGITVDSASVQLTL 149 Query: 159 PDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 150 PESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASEDVAIIDTKNG 209 Query: 216 LLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 210 VISEADTANEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFDEI 269 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTD 330 + P+ RS + S+ S + N + ++ ++ Sbjct: 270 KQNTER-YPNDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEENGGDQNTYTSE 328 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 329 KSSETTNYELDSTIQEIEKHP-SLAKTNVVVWVDQQTLNKNGVDMAEFTKAIGVSAGLTP 387 Query: 391 IVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 ++ + GD +TI + FL+NQ + Sbjct: 388 NMTTEEAGAGGEATATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDPAKTTEPASKAWIW 446 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 ++ +L+F + + + R+ + + E + Sbjct: 447 WLVGSLLFAIIAAGIIAYIIFLKRKEQLEEALEAEEKDFIPAEEAIIDPEEHPDFHFQTN 506 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 L + +L M + + R A +++KW E Sbjct: 507 AFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|217965189|ref|YP_002350867.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23] gi|217334459|gb|ACK40253.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23] gi|307570252|emb|CAR83431.1| flagellar M-ring protein [Listeria monocytogenes L99] Length = 550 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 84/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + + +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-------- 380 ++K E +NYE+++ L + ++ V V++ L + A+ K Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 381 -----IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + A+ + + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEVAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++ + L++R + +L M + + R A +++KW E Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|42780839|ref|NP_978086.1| flagellar MS-ring protein [Bacillus cereus ATCC 10987] gi|42736759|gb|AAS40694.1| flagellar M-ring protein [Bacillus cereus ATCC 10987] Length = 524 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 78/561 (13%), Positives = 191/561 (34%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ I A + +G L+ L Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFLL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|239628992|ref|ZP_04672023.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519138|gb|EEQ59004.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 537 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 83/568 (14%), Positives = 184/568 (32%), Gaps = 48/568 (8%) Query: 1 MAILDQLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSP--HYDNLYV 53 M I ++L +GR + + A + ++ A+ +Y L+ Sbjct: 1 MGIKEKLKSVSGEKGGIGRVLDTGKKKAVAAGITAAVVIALAASVLLNTKKSGNYVALFP 60 Query: 54 KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113 + + N + L+ ++ R + G ++VP +G + ++ G P ++ +++ Sbjct: 61 GISKEENNEVLTVLNARGVEARRNSEG-EVTVPEDQLGDIMLDMSELGYPKTALP--FDI 117 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG----A 169 F F T F + + L+ I RT++ ++G+ A V + +PD ++ + Sbjct: 118 FSDNMGFTTTEFEKRQYLLMNLQDRIERTLKDMTGVKNAIVTLNVPDESNYVWDEGGSNS 177 Query: 170 RPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-- 227 + S+ + + AI++LVA +VP L +VTV+++ + Sbjct: 178 TGSISLTLMPSYELSPEKVSAIKNLVADSVPRLLPENVTVVNAETMQEMVADDIGTTSYG 237 Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVE 285 L ++ +E I L D R + ++ D ++ Y+P + + Sbjct: 238 LNRLDFEAKVEERLENKIKNVLTLAYSPDKLRVSATVVIDYDRMITEDLHYEPQDNGQGV 297 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345 + + E N + T +Y ++ Sbjct: 298 VEQYKEGRSLNGGAAGAGGIAGEENNTDIPAYGTAGTGGGAGGTGDYYRDVDYLVSYIKK 357 Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405 DN KL++ ++A+ VN LT+ + + IV Sbjct: 358 QIEKDNVKLQKATVAITVNDDNLTDSKKQQLIDAASKAANIAPEDIV------------- 404 Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465 ++S + + + + + A VG L+ L L +R Sbjct: 405 --VSSFREIPKETVKNDKPALPVQAPAQTGLDYRLIAAAAGVGILIFLLLLLLLMRSRKK 462 Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 + +L P A D+ + + Sbjct: 463 KHLKE------DQMLFAPFEDGDTQEPESVEQRAAEDAVQNSLGRIQPDS---------S 507 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553 ++ ++N E A ++ W + + Sbjct: 508 DPVDQVRSFAQMNPEIIASMISSWLKED 535 >gi|324325764|gb|ADY21024.1| flagellar MS-ring protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 524 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----SLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ I + ++ L+ FL Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLFGGITGGLLVLFGLIWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|228984830|ref|ZP_04145002.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775028|gb|EEM23422.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 524 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 201/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVTGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAFGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|315281378|ref|ZP_07870015.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120] gi|313614975|gb|EFR88482.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120] Length = 550 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 84/540 (15%), Positives = 181/540 (33%), Gaps = 47/540 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPSDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 + + GD +TI + FL+NQ Sbjct: 386 TPNMRTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + +L+F + + + R+ + + E Sbjct: 445 IWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEAEEKDYIPAEEAIINPEEHPDFNFQ 504 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 D L + +L M + + R A +++KW E Sbjct: 505 TDAFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550 >gi|222095370|ref|YP_002529430.1| flagellar ms-ring protein [Bacillus cereus Q1] gi|221239428|gb|ACM12138.1| flagellar M-ring protein [Bacillus cereus Q1] Length = 524 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ + AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEETSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ I + + L+ FL Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLFGGITGGLLALFGLIWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|116514986|ref|YP_802615.1| hypothetical protein BCc_043 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256840|gb|ABJ90522.1| flagellar basal-body MS-ring and collar protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 489 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 82/432 (18%), Positives = 151/432 (34%), Gaps = 50/432 (11%) Query: 1 MAILDQLL-QFFKSGTSL---GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M + +L Q K L +I + V L+ I+ ++ + HY LY L Sbjct: 1 MNFIKKLFFQIKKKLNYLFFCILKKIKYIFFVSLISIISIISIFLWSKKVHYVVLYNNLS 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D I L +I +R +++ ++ VP + + L N G+EL DK Sbjct: 61 QEDSKWIISRLKILHIPYRCNNSFKTLLVPEDKINILNLSLLKN-NNILKKNFGFELLDK 119 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG++ F + I R LEGE+++T++ I I ARVH+V F + P+ASV+ Sbjct: 120 E-KFGISQFHEHINYHRGLEGELSKTLEQIFPIQCARVHLVCKKDTDFFENNQIPSASVI 178 Query: 177 IRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLS 232 I Y+ AI L++ +VP+L ++ ++D G +L ++ + Sbjct: 179 ITLFPNMHLTYEQINAIILLISGSVPDLSSDNIVLVDQFGNILNKYDLNHTKFFNNSQYK 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + ++ I L L +F V +L D + + + Sbjct: 239 KITILEEYYSQRIKDILLPILDSKDFVVQVTTKLKKDNHASTFSDKNYNVNQKIDNSFIS 298 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 K+ N +I +++ Sbjct: 299 -----------------------------------PNFKELNIKNIKITVLINYKKNNSG 323 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 K+ LS + + L I +V + ++ +GD I + + Sbjct: 324 KMVPLS-----KNELNNIENLVKSVINLSKNKLNNIENLVKSVINLSKNKGDRINLINYM 378 Query: 413 FLENQLFNSGTV 424 FL+ + Sbjct: 379 FLDTPSVIDASY 390 >gi|300117335|ref|ZP_07055125.1| flagellar MS-ring protein [Bacillus cereus SJ1] gi|298725170|gb|EFI65822.1| flagellar MS-ring protein [Bacillus cereus SJ1] Length = 520 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 81/568 (14%), Positives = 194/568 (34%), Gaps = 67/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ FL Sbjct: 398 GQVNVVTVQF---DQPKEEKPKEPEESGINWWLFGGIPAGLLAIGGLVWFFL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + SS + + Sbjct: 447 ----------------ARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPEEPK 490 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 D ++ + + E AK+++KW Sbjct: 491 EPTLDEQVQDATKEHVEGTAKVIKKWLN 518 >gi|229090707|ref|ZP_04221940.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42] gi|228692649|gb|EEL46375.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42] Length = 524 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSTSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|228914325|ref|ZP_04077940.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845319|gb|EEM90355.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 524 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKLEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|49477313|ref|YP_035866.1| flagellar MS-ring protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143713|ref|YP_083117.1| flagellar MS-ring protein [Bacillus cereus E33L] gi|196038966|ref|ZP_03106273.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99] gi|218902861|ref|YP_002450695.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820] gi|225863605|ref|YP_002748983.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102] gi|228926782|ref|ZP_04089850.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945349|ref|ZP_04107704.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229183938|ref|ZP_04311154.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1] gi|254723823|ref|ZP_05185609.1| flagellar MS-ring protein [Bacillus anthracis str. A1055] gi|301053283|ref|YP_003791494.1| flagellar M-ring protein [Bacillus anthracis CI] gi|49328869|gb|AAT59515.1| flagellar M-ring protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977182|gb|AAU18732.1| flagellar M-ring protein [Bacillus cereus E33L] gi|196030111|gb|EDX68711.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99] gi|218537965|gb|ACK90363.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820] gi|225787831|gb|ACO28048.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102] gi|228599590|gb|EEK57194.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1] gi|228814321|gb|EEM60587.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832895|gb|EEM78464.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375452|gb|ADK04356.1| flagellar M-ring protein [Bacillus cereus biovar anthracis str. CI] Length = 524 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|196033494|ref|ZP_03100906.1| putative flagellar M-ring protein FliF [Bacillus cereus W] gi|195993928|gb|EDX57884.1| putative flagellar M-ring protein FliF [Bacillus cereus W] Length = 524 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|229166587|ref|ZP_04294339.1| Flagellar M-ring protein fliF [Bacillus cereus AH621] gi|228616841|gb|EEK73914.1| Flagellar M-ring protein fliF [Bacillus cereus AH621] Length = 524 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 80/561 (14%), Positives = 194/561 (34%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L A +F Y +Y L +D I+ Sbjct: 1 MEKIKNVFQSLKTWHKLVIGAALLAI--ATGALLYFTLPDKYVVVYQNLNDTDKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGTDEAHSNSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ + S M + I A + + L+ FL Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522 >gi|84502563|ref|ZP_01000699.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597] gi|84389375|gb|EAQ02172.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597] Length = 238 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 139/239 (58%), Gaps = 3/239 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + ++ +LG+ R++ L +V ++ V P Y LY L S+ +R+ A Sbjct: 1 MQALLENLKALGQGRLIALGVTGVVLVLATFFGVRAVLEPSYSTLYRDLTPSEASRMVGA 60 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A ++ +GS +SVP + +AR+ LA QGL + +G+E+FD+ + G+ SFM Sbjct: 61 LEGAGFAVQVDSSGSILSVPQEDLARARMELAGQGLVGDGA-AGWEIFDEASGLGMNSFM 119 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSV 184 Q+I R+RALEGE+AR+IQ+I G+ AARVH+V+P+ +F + +P++SV+I RA + Sbjct: 120 QKINRLRALEGELARSIQTIDGVDAARVHLVLPEREAFSRERPQPSSSVIIRSRAGHQVN 179 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243 + A+AIR LV++AVP + G VTVL + G+ + A E S+ +++ I Sbjct: 180 LRQAQAIRALVSSAVPEMSPGRVTVLTANGETILAEEGTDVAEVTQQSLKASVEDRIAS 238 >gi|163939552|ref|YP_001644436.1| flagellar MS-ring protein [Bacillus weihenstephanensis KBAB4] gi|163861749|gb|ABY42808.1| flagellar M-ring protein FliF [Bacillus weihenstephanensis KBAB4] Length = 524 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 81/561 (14%), Positives = 194/561 (34%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L A +F Y +Y L +D I+ Sbjct: 1 MEKIKNVFQSLKTWHKLVIGAALLAI--ATGALLYFTLPDKYVVVYQNLNDTDKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + I A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ + S M + I A + + L+ FL Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522 >gi|228933030|ref|ZP_04095893.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826631|gb|EEM72402.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 524 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 84/568 (14%), Positives = 204/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + Q I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAEAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + S + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPESKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|229096232|ref|ZP_04227205.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29] gi|229115187|ref|ZP_04244597.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3] gi|228668327|gb|EEL23759.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3] gi|228687192|gb|EEL41097.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29] Length = 524 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 82/561 (14%), Positives = 199/561 (35%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKIKNVIQSLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T ++P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQVDPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ + S M + I A + + L+ FL Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 K + ++ L+ + I + Sbjct: 447 --ARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDD---Q 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522 >gi|217959230|ref|YP_002337778.1| flagellar MS-ring protein [Bacillus cereus AH187] gi|229138446|ref|ZP_04267035.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26] gi|217064704|gb|ACJ78954.1| putative flagellar M-ring protein FliF [Bacillus cereus AH187] gi|228644983|gb|EEL01226.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26] Length = 524 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 79/561 (14%), Positives = 193/561 (34%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++++ +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVISAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ I A + +G L+ FL Sbjct: 405 VQF---DQPKEEKPKEPEESGINWWLFGGIPAGLLAIGGLVWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|229155317|ref|ZP_04283428.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342] gi|228628242|gb|EEK84958.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342] Length = 524 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 201/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTRKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|229109203|ref|ZP_04238802.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15] gi|228674213|gb|EEL29458.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15] Length = 524 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKMWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K + + N ++ ++ + Sbjct: 447 ----------ASRKRKKEEEEYGEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + ++ + + E AK+++KW Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522 >gi|229121298|ref|ZP_04250529.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201] gi|228662143|gb|EEL17752.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201] Length = 524 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 81/568 (14%), Positives = 201/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKMDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFL--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEKPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|203287751|ref|YP_002222766.1| flagellar M-ring protein [Borrelia recurrentis A1] gi|201084971|gb|ACH94545.1| flagellar M-ring protein [Borrelia recurrentis A1] Length = 568 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 89/597 (14%), Positives = 193/597 (32%), Gaps = 72/597 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I K + + + L I+ + F L+ + + Sbjct: 1 MNNFITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D +++I L N + I+ +G +M + R L + L + + LFD Sbjct: 60 DQYLLDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A +++VMP+ F++ ASV Sbjct: 119 -IDRWTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226 I S + E + L+ AV L+ ++ ++D+ G +L ++ Sbjct: 178 RITPKPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL+ L D F + V L+ Q Y P Sbjct: 238 AEKERKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEP 297 Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 S ++ K + P E N P + Sbjct: 298 QNPKVSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYGDMSDIIG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377 +++ +E N +N K + + ++ +S+ + ++ + Sbjct: 355 SNEFKEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + D L I ++ ++ RGD+IT+ ++ F F D + Sbjct: 415 KPISDETLKSITDVLQSSFEYKPERGDSITVRNIIFDRASEFRKIDE-----DYFAGEKF 469 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + +V ++ LL+ + + + E + + + D Sbjct: 470 KFLIFVVSIIIALLILIFTVFFIISRELERRRRLREEEFARQAHLRRQQALMDGDNIGID 529 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 N+ +D + + + E AK++R W + Sbjct: 530 NVVGGFREEDELQSNAEI------------------LAREKPEDVAKLIRTWIVKNV 568 >gi|75761142|ref|ZP_00741134.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896679|ref|YP_002445090.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842] gi|228900328|ref|ZP_04064558.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222] gi|74491370|gb|EAO54594.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541808|gb|ACK94202.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842] gi|228859363|gb|EEN03793.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222] Length = 525 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 201/568 (35%), Gaps = 62/568 (10%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + N + NYEI+ Sbjct: 289 EESSTAQEGTDTKQSAGITANGEVPNYGTNNNQNGKVVYNNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRMDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + + N ++ ++ + Sbjct: 447 ---------ARRKRKKEEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + ++ + + E AK+++KW Sbjct: 498 TLD--EQVQDATKEHVEGTAKVIKKWLN 523 >gi|229102345|ref|ZP_04233053.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28] gi|228680992|gb|EEL35161.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28] Length = 524 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 82/561 (14%), Positives = 200/561 (35%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKIKNVIQSLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T ++P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ + S M + I A + + L+ FL Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 K + ++ L+ + I + Sbjct: 447 --ARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDD---Q 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522 >gi|30019791|ref|NP_831422.1| flagellar MS-ring protein [Bacillus cereus ATCC 14579] gi|229127072|ref|ZP_04256071.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4] gi|229144358|ref|ZP_04272764.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24] gi|29895336|gb|AAP08623.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 14579] gi|228639145|gb|EEK95569.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24] gi|228656425|gb|EEL12264.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4] Length = 524 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 200/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K + + N ++ ++ + Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + ++ + + E AK+++KW Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522 >gi|228938860|ref|ZP_04101460.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971741|ref|ZP_04132362.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978350|ref|ZP_04138727.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407] gi|228781367|gb|EEM29568.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407] gi|228787831|gb|EEM35789.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820709|gb|EEM66734.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939360|gb|AEA15256.1| flagellar MS-ring protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 524 Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 200/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRMDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K + + N ++ ++ + Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + ++ + + E AK+++KW Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522 >gi|229043500|ref|ZP_04191210.1| Flagellar M-ring protein fliF [Bacillus cereus AH676] gi|228725878|gb|EEL77125.1| Flagellar M-ring protein fliF [Bacillus cereus AH676] Length = 524 Score = 193 bits (489), Expect = 9e-47, Method: Composition-based stats. Identities = 78/568 (13%), Positives = 198/568 (34%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + ++ I A + +G L+ L Sbjct: 398 GQVNVVTVQF---DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K + + N ++ ++ + Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + ++ + + E AK+++KW Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522 >gi|206974945|ref|ZP_03235860.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97] gi|206746964|gb|EDZ58356.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97] Length = 524 Score = 193 bits (489), Expect = 9e-47, Method: Composition-based stats. Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ + AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEETSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ I + + L+ FL Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLIGGITGGLLALFGLIWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|229172393|ref|ZP_04299952.1| Flagellar M-ring protein fliF [Bacillus cereus MM3] gi|228610864|gb|EEK68127.1| Flagellar M-ring protein fliF [Bacillus cereus MM3] Length = 524 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 84/568 (14%), Positives = 205/568 (36%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + Q I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ L Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K+ E + + +S+ + +P + I + + L +++ Sbjct: 447 ARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVHDAT 506 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + + E AK+++KW Sbjct: 507 ------------KEHVEGTAKVIKKWLN 522 >gi|118477182|ref|YP_894333.1| flagellar MS-ring protein [Bacillus thuringiensis str. Al Hakam] gi|118416407|gb|ABK84826.1| flagellar M-ring protein [Bacillus thuringiensis str. Al Hakam] Length = 524 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KLEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + ++ I A + +G L+ F Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|196045123|ref|ZP_03112356.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108] gi|196024125|gb|EDX62799.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108] Length = 524 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 82/568 (14%), Positives = 203/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQVDPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S ++ I A + +G L+ Sbjct: 398 GQVNVVTVQFDQPKEEKKKEQEES---GINWWLFGGIPAGLLAIGGLVWFL--------- 445 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 KK E + L+ I+++ + + + + + Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522 >gi|296502346|ref|YP_003664046.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171] gi|296323398|gb|ADH06326.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171] Length = 524 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 77/568 (13%), Positives = 198/568 (34%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + ++ I A + +G ++ L Sbjct: 398 GQVNVVTVQF---DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGGIVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 K + + N ++ ++ + Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 + ++ + + E AK+++KW Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522 >gi|229078928|ref|ZP_04211480.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2] gi|228704342|gb|EEL56776.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2] Length = 524 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|254993621|ref|ZP_05275811.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-064] Length = 544 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 84/534 (15%), Positives = 188/534 (35%), Gaps = 47/534 (8%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 ++ + GD +TI + FL+N Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 + + + F + A + I +K ++ A + P Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549 ++ + L++R + +L M + + R A +++KW Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKW 544 >gi|152975158|ref|YP_001374675.1| flagellar MS-ring protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023910|gb|ABS21680.1| flagellar M-ring protein FliF [Bacillus cytotoxicus NVH 391-98] Length = 521 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 76/561 (13%), Positives = 203/561 (36%), Gaps = 55/561 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNR 62 ++++ F+S + + + + + A + P Y +Y L +D Sbjct: 1 MEKIKNVFQSLKTWHK------MVIGAAILAIGTGALLYFTLPDKYVVVYQNLNDADKQE 54 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I+ LS+ +D+++ ++G +I VP+ R + GLP +S SG E+ + +S G Sbjct: 55 ITAELSKLGVDYQLVNDG-AIKVPTKDAPWIRKEMNGMGLPFNS-KSGEEILLE-SSLGS 111 Query: 123 TSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIR 178 + +++ ++ + ++ + I ++ + I +A V I +P+ + +V ++ Sbjct: 112 SEQDKKMKQLVGTKKQLEQDIVRNFATIESANVQITLPEKETIFDEEKAKGTAAITVGVK 171 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSI 233 I+ +++AAV + +V+V+DS +++ K + + Sbjct: 172 RGQLLTEDQVAGIQQMISAAVSGVKPEEVSVIDSKKGIVSKGADASTHASSSSYEKEVEM 231 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLS 291 Q I+++++ +I+ L + F+ +N D + Y + + + Sbjct: 232 QQQIENKLKQDIDATLMTMFKANEFKVNTKVSVNYDEVTRQSEKYGDKGVLRSRQDQQER 291 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351 AQ ++ + +T +P+ + + + + + NYEI+ Sbjct: 292 STAQEGADAKQGAGITANGEVPNYGTNNNQNGKVVYDNNNGNKIENYEIDKTVETIKKHP 351 Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-TITITS 410 +L + ++ V V+ LT+ + I N + + + + Sbjct: 352 -ELTKTNVVVWVDNDTLTKRRIDMTT------FKEAIGTAAGLQIDPNGEFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + + + + + + + + L+ K Sbjct: 405 VQFDQQKEEKTKEPEPNGFNWWLIGGIAGGLLALGGLVWYLL------------ARRKRK 452 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + E+ L+ +++ T + + + + + + + Sbjct: 453 QEEIEEYESLAEEEVAATDETIMEIPEEKLEPTEQAEPTEPTLD--------------EQ 498 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 499 VQDAAKEHVEGTAKVIKKWLN 519 >gi|203284212|ref|YP_002221952.1| flagellar M-ring protein [Borrelia duttonii Ly] gi|201083655|gb|ACH93246.1| flagellar M-ring protein [Borrelia duttonii Ly] Length = 568 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 88/597 (14%), Positives = 194/597 (32%), Gaps = 72/597 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M I K + + + L I+ + F L+ + + Sbjct: 1 MNNFITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIK 59 Query: 59 D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 D +++I L N + I+ +G +M + R L + L + + LFD Sbjct: 60 DQYLLDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 ++ + +T F + I R++ + + I ++ + A +++VMP+ F++ ASV Sbjct: 119 -IDRWTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASV 177 Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226 I S + E + L+ AV L+ ++ ++D+ G +L ++ Sbjct: 178 RITPKPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDL 237 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280 K + + + I+ AL+ L D F + V L+ Q Y P Sbjct: 238 AEKERKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEP 297 Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 S ++ K + P E N P + Sbjct: 298 QDPKVSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDMSDIIG---K 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377 +++ +E N +N K + + ++ +S+ + ++ + Sbjct: 355 SNEFKEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREY 414 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + D L I ++ ++ RGD+IT+ ++ F + F D + Sbjct: 415 KPISDETLKSITDVLQSSFEYKPERGDSITVRNIIFDRSSEFRKIDE-----DYFAGEKF 469 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + +V ++ LL+ + + + E + + + D Sbjct: 470 KFLIFVVSIIIALLILIFTVFFIISRELERRRRLREEEFARQAHLRRQQALMDGDNIGID 529 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 ++ +D + + + E AK++R W + Sbjct: 530 DVVGGFREEDELQSNAEI------------------LAREKPEDVAKLIRTWIVKNV 568 >gi|229069298|ref|ZP_04202588.1| Flagellar M-ring protein fliF [Bacillus cereus F65185] gi|228713785|gb|EEL65670.1| Flagellar M-ring protein fliF [Bacillus cereus F65185] Length = 524 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|160880849|ref|YP_001559817.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg] gi|160429515|gb|ABX43078.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg] Length = 531 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 76/572 (13%), Positives = 173/572 (30%), Gaps = 70/572 (12%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 I ++ + + + +I+ SV+ I + F + Y L + ++ Sbjct: 5 IKQIPVRLLEIWKKYSKKQKIIIISVVSSVICALLLLIFLLGRTEYVELIKLEDTKTASQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 L E I +++ D+G ++ V +S +A++ +A + S + S +L + Sbjct: 65 AIDILKENGIAYQLKDDGVTVLVDNSKKTEAKLLIADSEIASKAKLSLEQLLNND--MST 122 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARV-HIVMPDMGSFRKIGARPTASVMIRAIN 181 T++ ++ +G++ ++ GI AR+ ++ S + + S+ + + Sbjct: 123 TNYDKQTKLHLYYQGDLEELLKKQEGIDDARISYLPSDKRSSILEQEKEISCSIFLTINS 182 Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQH 239 SAEAI VA ++ N V V+D G LL + E K+L QA+ Sbjct: 183 KFKKSSAEAIAITVANSLGNETTNKVKVIDQYGNLLYNGPEDEESEYTNKNLEFRQAVLG 242 Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR-EIVYDPDSKVERSIRLSKDAQRSE 298 + + + G D + ++N D + + + + + Sbjct: 243 DYTERVVR-FGLMNGFDYVEPSFALDINFDKTTEEIREYFAGEGLEQGLYQSYQKISSEN 301 Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358 + N + + E +Y + K T + + Sbjct: 302 QGSNGDIPGTDSNTDTDYYIQTEKSG---KSSYDELNISYLPSEKLTKTLKGWGIVNVDT 358 Query: 359 IAVVVNKGRLTEVLGR------------------SADQGKIDSYLAEINKIVSAATGINS 400 V + R+ ++ + + K E + + ATG+N Sbjct: 359 SKVAIALKRVKDIKEEDLKLLGLLNGTTFEEYVLNNSEPKQLDVSKEYYTLFANATGLNE 418 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 I +F+ + + + + + +I F+ + Sbjct: 419 NNISLIMWEVPNFIPTPKSDVNWQLILEIILAALILGLLI-------------FVVFRGM 465 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 + + L + I Sbjct: 466 APV-----------------------------EVTEIEPELSVEQLLATTKENQSLDDIE 496 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 ++ + ++ N E A +LR W Sbjct: 497 FSEKSETRRMIEKFVDENPEAVANLLRNWLTD 528 >gi|229029426|ref|ZP_04185509.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271] gi|228731885|gb|EEL82784.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271] Length = 524 Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 79/561 (14%), Positives = 193/561 (34%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + I A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFAAIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 ++ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + + + S M + I + + L+ FL Sbjct: 405 VQFDQPKEEKKKEPEASGM---NWWLIGGITGGLLALVGLIWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|302670718|ref|YP_003830678.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316] gi|302395191|gb|ADL34096.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316] Length = 539 Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 79/562 (14%), Positives = 170/562 (30%), Gaps = 41/562 (7%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + + + ++ V ++ + +N P Y L + + Sbjct: 5 LRAAWQKVLDWWNQFTAKQKTLIVGAGTVVLLTIIILVTVLNQPQYVLLAQATSTKEASE 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I L +I++++SD+G V A + L A + S + SF Sbjct: 65 IKDLLDSNSINYKMSDDGLEFRVLKKDQANANLILGANDIQSYAYTIDNV---TEGSFST 121 Query: 123 TSFMQEITRVRALEGEIAR-TIQSISGIVAARVHIVMPDMG---SFRKIGARPTASVMIR 178 T + ++ V+ LE ++ + I +A V + +PD K A + I Sbjct: 122 TEYDKQKKYVKYLESKLEHDMLAKFDTIDSANVTLHIPDDDGTLIGNKDEASAWILLNIN 181 Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQ 235 N ++A + VAA++ D+ +LD +G LL + + I L++ Sbjct: 182 DPNGFGEENANFVAKAVAASLGKKSTNDIVILDYSGNLLFSGSEETTDAGIASNQLNLKT 241 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 + ++ + K L D+ + A L+ ++ Y P + + + Sbjct: 242 KAEQIVKNEVKKVLLGTKLYDDIQVASNLVLDFSKEERTTHNYTPAEDQTQGVLSHESIY 301 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 +E S + V + ++ EE +Y N T+ ++ Sbjct: 302 NAENVNGVSGIPGTDTNEDDETTYVTQDNTNSSSTITEEDRSYLPNEDITTRTNIPGAIK 361 Query: 356 RL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 SI+V + + + AT + + Sbjct: 362 YDESSISVTAINYVVMKEEDYDKAANGDLDWKDYKIANTEPATMQVPDEMINVVAKATGI 421 Query: 414 LENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 + + Q F+D + ++ L+ L+ F+ + ++ Sbjct: 422 AAGNVAMAAYTQYVFIDKTGANITVTDILQIATILIILGLLAFIVIRSMW---------- 471 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 + S Q + S I ++ + Sbjct: 472 -----------------TSKKTEEEPEPEELSVEQLLESTPEETLEDIEMDTGSETKRLI 514 Query: 532 LHMIEINEERFAKILRKWARSE 553 ++ N E A +LR W + Sbjct: 515 EKFVDENPEAAATLLRNWLNED 536 >gi|226327719|ref|ZP_03803237.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198] gi|225203423|gb|EEG85777.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198] Length = 396 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 65/409 (15%), Positives = 139/409 (33%), Gaps = 54/409 (13%) Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238 AI H+VA++V + VT++D +GKLLT + R++ L VQ ++ Sbjct: 6 GRALDEGQINAIVHIVASSVAGMPDSSVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELE 65 Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298 + I L +G N + V A+++ + Y P+ ++ SK +SE Sbjct: 66 SRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQLSQSE 125 Query: 299 TSQ---PESAVTVEQNMPHVSDRKVPLPR----------------------SLENTDKKE 333 + N P + + + + + Sbjct: 126 QNGGMLAGGVPGALSNQPVAPPQAPIETPKAQEGEKTEGTNATGTNRSLTRNPNSNSRLD 185 Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG---------RSADQGKIDSY 384 E +NYE++ + +ERLS+AV+VN + + D Sbjct: 186 ETTNYEVDRRIRHIKRPVGNVERLSVAVIVNYKTVENKKEAAEGEEPVVETKLVPLTDEQ 245 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444 + +I +V A G + RGD++++ + F + + +IL++ ++ Sbjct: 246 IQQIEGLVREAMGYSQERGDSLSVVNSQFNDIEEKVITVPVWENPEILAK----ALDLGR 301 Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504 +L+ ++ L ++ + + + + V + ++ + Sbjct: 302 WLLLIIIAWILWRKLVKPQIEKRREAEAAAQKAVLKTKLQVKDDVDEAELDDEARRKQAR 361 Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + R+ M E + A ++R+W E Sbjct: 362 KRVSAELQS---------------QRIREMAEKDPRVVAMVIREWMSKE 395 >gi|229195959|ref|ZP_04322712.1| Flagellar M-ring protein fliF [Bacillus cereus m1293] gi|228587518|gb|EEK45583.1| Flagellar M-ring protein fliF [Bacillus cereus m1293] Length = 524 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 + + ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KRMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 + ++ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LMADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 ++ + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + ++ I + + L+ FL Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLIGGITGGLLALFGLIWFFL--------------- 446 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + + + D + Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + + E AK+++KW Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522 >gi|229149948|ref|ZP_04278176.1| Flagellar M-ring protein fliF [Bacillus cereus m1550] gi|228633629|gb|EEK90230.1| Flagellar M-ring protein fliF [Bacillus cereus m1550] Length = 524 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|228958026|ref|ZP_04119762.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801651|gb|EEM48532.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar pakistani str. T13001] Length = 524 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRRKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|218232102|ref|YP_002366431.1| flagellar MS-ring protein [Bacillus cereus B4264] gi|218160059|gb|ACK60051.1| putative flagellar M-ring protein FliF [Bacillus cereus B4264] Length = 524 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 78/568 (13%), Positives = 197/568 (34%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + ++ I A + +G L+ L Sbjct: 398 GQVNVVTVQF---DQPKAEKEKEPEKSGINWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|229189843|ref|ZP_04316854.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876] gi|228593651|gb|EEK51459.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876] Length = 524 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKAEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|206970714|ref|ZP_03231666.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134] gi|228964729|ref|ZP_04125836.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto str. T04001] gi|229178155|ref|ZP_04305526.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W] gi|206734350|gb|EDZ51520.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134] gi|228605285|gb|EEK62735.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W] gi|228794979|gb|EEM42478.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto str. T04001] Length = 524 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|228920457|ref|ZP_04083802.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839087|gb|EEM84383.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 524 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 79/568 (13%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + + G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTSAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|228907379|ref|ZP_04071237.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200] gi|228852240|gb|EEM97036.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200] Length = 524 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230 ++ I+ +++AAVP + +V+V+DS +++ E + K Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + ++ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + ++ F + + + S M + I A + +G L+ L Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 + + ++ L+ + I + Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPT 497 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551 ++ + + E AK+++KW Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522 >gi|313905127|ref|ZP_07838496.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6] gi|313470030|gb|EFR65363.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6] Length = 563 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 88/586 (15%), Positives = 194/586 (33%), Gaps = 51/586 (8%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M IL++L + ++ +++ R ++I+ + + + + + Y L+ L + Sbjct: 1 MKILNKLKETWQQLSAMARRLLIIVLVGAVAFVAIGIVLLNQKKTTEYTTLFTGLNQEES 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I + E + +I VP K R + ++G P S Y ++ + Sbjct: 61 REIVSMIQEEGKQYLYDAGSGTIQVPVEQADKLRAEILSKGYPQSGFT--YSMYVGNSGI 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---------- 170 T +E + L+ + TI+ G+ A+V I D + Sbjct: 119 MATESDKEQYTLYDLQDRLGATIRLFDGVRDAKVTIAQADDDGYVLDEDGDTKSNSDDDV 178 Query: 171 ---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG--KLLTANEMERN 225 + V ++ + K+A+AIR+LVA +V ++ +V+V D+ ++ + E Sbjct: 179 NASASVVVTMKRGSELTEKNADAIRNLVARSVRGINFTNVSVFDAATMQEIGGNADDESA 238 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY------- 278 + + +++ I N+ K LA ++N AV +L+ T Y Sbjct: 239 NSEAVNELTKQVENNIAANVKKVLAKLYHMENVEVAVRGKLDTSTLLSENTQYTVPVQAD 298 Query: 279 --DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 D + ++ S + A T + ++ Sbjct: 299 STDKEGLLDHEEDASAYTGPGAATAAGVAGTDANADTPRYTTENGANGDEYSSFDTSTSR 358 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + NT + L+ ++AVV++ + ++ +V+ A Sbjct: 359 QWLYNTLKEQVQRNPGTLQDCTVAVVIDTEDTSVDE-------------NDLINLVADAA 405 Query: 397 GIN-SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI+ + IT+ + + + + R +I A V Sbjct: 406 GISREDAPEKITVVRSAIPKATATPTPGPEDNSEAEQQRQQMIIIAAAVGAFLF------ 459 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 L + K + + L + L + A ++ + Sbjct: 460 -----LLLIILIIRGKKKKKKQRELEAQLAAEQEAAELAAAEAEAAAAAQSEKELSEEES 514 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561 S + ++ + +E N + AK+++ W R E + Sbjct: 515 ASNEHVARGQELKDNIGDFVEENPQVAAKLIQSWLREGDEKSGRKQ 560 >gi|229017034|ref|ZP_04173954.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273] gi|229023215|ref|ZP_04179726.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272] gi|228738140|gb|EEL88625.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272] gi|228744305|gb|EEL94387.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273] Length = 525 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 79/561 (14%), Positives = 194/561 (34%), Gaps = 53/561 (9%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + I A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFAVIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGAGEAHSSSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295 + +++ +I+ L + ++ +N D + Y + ++ S AQ Sbjct: 236 EGKLKRDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + + +T +P+ + + + + NYEI+ +L Sbjct: 296 EGADMKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410 + ++ V V+ L + + + + A G+ + + + + Sbjct: 355 KTNVVVWVDNDTLVK----------RRIDMETFKEAIGTAAGLQADPNGNFTNGQVNVVT 404 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 + F + + + S M + I + L Sbjct: 405 VQFDQPKEDKPKKPEESGM---NWWLIGGITGGL------------------LALALLIW 443 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 K + + + ++ ++ + D + Sbjct: 444 FLLARSKKKKEEEEYEEYLAEEEVAVSSESIMEIPEEKIVPEPKREPEPVEPTEPTLDDQ 503 Query: 531 LLHMIEINEERFAKILRKWAR 551 + + E AK+++KW Sbjct: 504 VQEATREHVEGTAKVIKKWLN 524 >gi|15639390|ref|NP_218839.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025632|ref|YP_001933404.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum SS14] gi|6016022|sp|O83414|FLIF_TREPA RecName: Full=Flagellar M-ring protein gi|3322682|gb|AAC65387.1| flagellar basal-body M ring protein (fliF) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018207|gb|ACD70825.1| flagellar basal-body M ring protein [Treponema pallidum subsp. pallidum SS14] gi|291059789|gb|ADD72524.1| flagellar M-ring protein FliF [Treponema pallidum subsp. pallidum str. Chicago] Length = 567 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 96/586 (16%), Positives = 193/586 (32%), Gaps = 70/586 (11%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEVSDVNRISVA 66 + + +LA LV +M + + P L + + +I + Sbjct: 11 KLKTQWKKWTLVQKSVLAGAALVSVMGVVVLLTWSAKPTLVPLIDTPITDETVREKIILR 70 Query: 67 LSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L+E N+ +S G ISV + R L + L + + + +FD V + T F Sbjct: 71 LNEENVRATVSSVGL-ISVSDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERWTRTDF 127 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 + + RA+ + I+++ I A V I +P+ F+ TASV+I S Sbjct: 128 ERRVDVRRAINNTVTNHIKALDDIDDAHVVINVPEDALFQADQKPITASVVIFPKPSSTI 187 Query: 186 KS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKSLSIVQA 236 S E I+ L+ AVP L ++T++DS +L E +++ K ++ Sbjct: 188 ASERKKIEGIQKLLKLAVPGLKDENITIVDSDATVLNDFEGFKDADRLSLIEKQQKMIAK 247 Query: 237 IQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------------- 280 ++ + E + L G D R + E+++ + + Y P Sbjct: 248 LESQYEAKVLALLQKTYGKDRVRDLNIKIEMDLSEKTSQTTKYLPIEIRQDNPDTPWDDS 307 Query: 281 --DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 V + + PE VE P + +++ + Sbjct: 308 QVVPSVTSISETATTTWQGTGLNPEGPPGVEGQTPPAYKDMS---NQVGLSNQSVVKKQE 364 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQGKIDSYLAE 387 I+ I L R +++V ++ + L E Sbjct: 365 AISKSEINEVVSP-VLGRRTVSVNIDGEWRKKRDEHGRFIVKEGHIEREYIPISAEELRE 423 Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447 K V A G ++ R D++++ ++ F F+ + + +I + V Sbjct: 424 ATKAVQDAIGFDAGRKDSVSVLNIKFDRTSEFDREDEHY----LRVQQRNMIILYSLASV 479 Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507 +L F+ + + + E + A+ N+++ Sbjct: 480 AIVLFIFMVYKVISKEVERRRRLREEELLRQQQLMRER--ALWEAEQAGMNVSMS----- 532 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + +L+M + E A ++R W E Sbjct: 533 -----------VEERKRLELQENVLNMAREHPEDVALLVRTWLMEE 567 >gi|49184575|ref|YP_027827.1| flagellar MS-ring protein [Bacillus anthracis str. Sterne] gi|65319014|ref|ZP_00391973.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Bacillus anthracis str. A2012] gi|227815496|ref|YP_002815505.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC 684] gi|254683235|ref|ZP_05147096.1| flagellar MS-ring protein [Bacillus anthracis str. CNEVA-9066] gi|254734587|ref|ZP_05192299.1| flagellar MS-ring protein [Bacillus anthracis str. Western North America USA6153] gi|254740996|ref|ZP_05198684.1| flagellar MS-ring protein [Bacillus anthracis str. Kruger B] gi|254755239|ref|ZP_05207273.1| flagellar MS-ring protein [Bacillus anthracis str. Vollum] gi|254759775|ref|ZP_05211799.1| flagellar MS-ring protein [Bacillus anthracis str. Australia 94] gi|49178502|gb|AAT53878.1| secretory protein of YscJ/FliF family (flagellar M-ring protein) [Bacillus anthracis str. Sterne] gi|227005826|gb|ACP15569.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC 684] Length = 460 Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 72/473 (15%), Positives = 175/473 (36%), Gaps = 43/473 (9%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59 M + ++Q K+ L + + + A + P Y +Y L +D Sbjct: 1 MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51 Query: 60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 I+ LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S Sbjct: 52 KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108 Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175 G + +++ ++ + ++ + I ++ + + A V I +P+ + +V Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----S 230 ++ I+ +++AAVP + +V+V+DS +++ E + Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228 Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288 + + I+ +++ +I+ L + ++ +N D + Y + ++ Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S AQ ++ + +T +P+ + + + + NYEI+ Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403 +L + ++ V V+ L + + + A G+ + Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456 + + ++ F + ++ I A + +G L+ FL Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFFLA 447 >gi|315123886|ref|YP_004065890.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017608|gb|ADT65701.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 317 Score = 187 bits (475), Expect = 4e-45, Method: Composition-based stats. Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 13/310 (4%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55 M + L Q + +L R + +++A+ I+V + + F S Y L + Sbjct: 1 MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60 Query: 56 EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 S I L + NI +++ + I VP V + R+ +A++GL S G+E FD Sbjct: 61 SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 +FG T+ Q++ RA+EGE+ARTI+++ I +A VHI P F + PTASV Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177 Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232 ++ K + I+++V+AAVP L +V + D +G L E E +++ + Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237 Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 + +E I + LA F G+D + +V + + Q+ + +YDP+ + RS + Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPN-PIVRSEQTL 296 Query: 292 KDAQRSETSQ 301 + + Sbjct: 297 NEERTGRKDP 306 >gi|258511371|ref|YP_003184805.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478097|gb|ACV58416.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 507 Score = 187 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 97/563 (17%), Positives = 193/563 (34%), Gaps = 71/563 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + Q L + + + F PHY + L+ + Sbjct: 4 ALRNIWTQARGKWAGLPARSRRNVIIAAAALLAALLVVVFAATRPHYVTIMEGLDDKSLG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I I G+++ VP+ +ARI LA GLP S ++ + S G Sbjct: 64 QVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLPQSGYDAYSGV---TTSLG 118 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180 T + + AL+ ++ TI I+G+ +A+VHIVMP F ASV + Sbjct: 119 ETQDEFNLQVLNALQQSLSTTISDINGVESAQVHIVMPQQQLFVTQPTTDAKASVFVDLG 178 Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232 I+ LVA +VP L +G+VTV+D G +L+++ L+ Sbjct: 179 PGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSDVAQGGSSSAVGAASSELA 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + ++++++ + L +G +N V A + + Q S+ Sbjct: 239 MREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTTTHTLINAPGSNTGFITSQ 298 Query: 293 DAQRSETSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + Q+S++S Q P+++ ++ N+ +NY + ++ TT D Sbjct: 299 EVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGAVTNSTTSNTITNYAYSYQNQQTTVD 358 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG-DTITIT 409 ++ S+ V++N S D+ + A+I V + G +G + ++++ Sbjct: 359 PMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFVQSVLGTTPSQGKNVVSVS 408 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ F + +L R+ Sbjct: 409 AVPFANPMQAVPAAPGARTWVYALGGLLLGALVVAG--------YLVFRRRRQPAGEVIE 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + L P++ + Sbjct: 461 IPAGETFEQPLEELPLTQE------------------------------------EVLRN 484 Query: 530 RLLHMIEINEERFAKILRKWARS 552 +L+ + + + FA +LR W Sbjct: 485 QLIQLAQHRPDDFASLLRTWLSE 507 >gi|330946240|gb|EGH47422.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 227 Score = 186 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 5/228 (2%) Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 ARI LA G+ S +N G+E+ DK G + FM+ R LEGE+ARTI +++ + A Sbjct: 1 ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 60 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 RVH+ +P F + +P+ASV++ AI +LVA +VP L +TV+ Sbjct: 61 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 120 Query: 211 DSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 D G LL+ + GK + ++ + + L LG D +++ V A ++ Sbjct: 121 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAVVDF 180 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316 + ++PD RS + + QRS +S N P Sbjct: 181 SAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGGVPGALSNQPPGP 227 >gi|218288294|ref|ZP_03492593.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius LAA1] gi|218241653|gb|EED08826.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius LAA1] Length = 507 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 96/563 (17%), Positives = 193/563 (34%), Gaps = 71/563 (12%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 A+ + Q L + + + F PHY + L+ + Sbjct: 4 ALRNIWTQARGKWAGLPARSRRNVIIAAAALLAALLVVVFAATRPHYVTIMEGLDDKSLG 63 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 ++ L I I G+++ VP+ +ARI LA GLP S ++ + S G Sbjct: 64 QVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLPQSGYDAYSGI---TTSLG 118 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180 T + + AL+ ++ TI I+G+ +A+VHIVMP F ASV + Sbjct: 119 ETQDEFNLQVLNALQQSLSSTISDINGVESAQVHIVMPQQQLFVTQPTTDAKASVFVDLG 178 Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLS 232 I+ LVA +VP L +G+VTV+D G +L+++ + L+ Sbjct: 179 PGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSDMAQGGSSSAVGAASSELA 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 + + ++++++ + L +G +N V A + + Q S+ Sbjct: 239 MREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTTTHTLINAPGSNTGFITSQ 298 Query: 293 DAQRSETSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 + Q+S++S Q P+++ + N+ +NY + ++ TT D Sbjct: 299 EVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGGVTNSTTSNTITNYAYSYQNQQTTVD 358 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG-DTITIT 409 ++ S+ V++N S D+ + A+I V + G +G + ++++ Sbjct: 359 PMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFVLSVLGTTPSQGKNVVSVS 408 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ F + +L ++ Sbjct: 409 AVPFANPMQAVPAAPGARTWVYALGGLLLGALVVAG--------YLVFRRRQQPAGEVIE 460 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + L P++ + Sbjct: 461 IPAGETFEQPLEELPLTQE------------------------------------EVLRN 484 Query: 530 RLLHMIEINEERFAKILRKWARS 552 +L+ + + + FA +LR W Sbjct: 485 QLIQLAQHRPDDFASLLRTWLSE 507 >gi|260438808|ref|ZP_05792624.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876] gi|292808797|gb|EFF68002.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876] Length = 534 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 178/565 (31%), Gaps = 49/565 (8%) Query: 3 ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 + D+L ++ + + ++ ++ +V I++ + + L + Sbjct: 1 MKDRLKAIWEKIKNFWLKFNKKQRILFVTIFVVIIVVIIVLSKVIGKKDMVKLRACSNET 60 Query: 59 DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 +V I L++ NI + + ++I V S +A++ L + + S+ + + Sbjct: 61 EVVEIRNLLNDNNISATVDEY-NNIFVDDSDYVEAKLVLGSNNISSAGYTLDDAV---SS 116 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMI 177 S T + + LE + + ++S+ I +ARV+I P+ S + ++ Sbjct: 117 SLSTTETVMKEKYTAYLESKFKQDLESMDAIKSARVNISYPETGNSIFSETQDAKITAVL 176 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQ 235 + AEAI L+A V N + V ++DS +L + + + Sbjct: 177 DLKKELSDEQAEAIGLLLATNVGNDNTNSVIIVDSQSNVLYSGNKANSSFTSNSTQKVKA 236 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVER-SIRLSKD 293 +++ I + + ++ + + ++N D ++ + Y PD Sbjct: 237 MLENAIIKGAEDLIYSTRLYNDVQIMINLDVNFDNVEVVDHKYIAPDGTDNGLPTHSYVI 296 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + + E N + + ++ N T+ + Sbjct: 297 NSEGQLATAGGNPGTESNDSDTDYDIINSDGKSSKYTLS--KYDWVQNEVITTTSKTPGE 354 Query: 354 L--ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411 + + S+A+V K + D E + S + + + Sbjct: 355 VNLKNSSMAIVCIKNTILTEEEAEEQGLLDDMTWEEYKQANSEPVETTVQDNILNAVATG 414 Query: 412 DFLENQLFNSGTVQVSFMD----ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467 + + S + VI ++ ++ ++ F+ + + R + + Sbjct: 415 SGIAAGNVSIIAYNTMTFFDKEVTSSSNPWFVIQIILAVLIAGVLIFIIIRSTRPVAVEE 474 Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527 + V + + I+ ++ Sbjct: 475 TEPELSVEDMLATT----------------------------KQQQPPVEEIDLQDKSET 506 Query: 528 DLRLLHMIEINEERFAKILRKWARS 552 + ++ N E A +LR W Sbjct: 507 RKAIEKFVDENPEAVALLLRNWLNE 531 >gi|266623336|ref|ZP_06116271.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479] gi|288864874|gb|EFC97172.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479] Length = 539 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 72/517 (13%), Positives = 163/517 (31%), Gaps = 43/517 (8%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y L+ + + N I L+ + + + G ++VP + VG + ++ G P ++ Sbjct: 54 EYVVLFPGISREENNEILAVLNGRGVGAKRNAEG-EVTVPENQVGDIMLDMSELGYPKTA 112 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 +++F F T F + + L+ I RT++ ++GI A V + + D ++ Sbjct: 113 LP--FDIFSDNMGFTTTEFEKRQYLLLNLQDRIERTLKDMNGIKNAIVTLNVSDDSNYVW 170 Query: 167 IGARP--TASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222 T +V + + + AI++L+A +VP L +VTV+++ ++ Sbjct: 171 DDQGADSTGAVSLTLMPDCELSPEKVGAIKNLIANSVPRLLPENVTVVNAETMQEMVSDD 230 Query: 223 ERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279 + L ++ ++ I L R + ++ D ++ Y+ Sbjct: 231 VGGLTSYGLGRLDFETKVEKRLQDKIMNVLTLAYPPGQIRVSATVVIDYDKMITEDLQYE 290 Query: 280 P--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 P + + + + + E N + + + Sbjct: 291 PQDNGQGVVEHYKTGQSVNGQGGGAGGVAGEENNTDIPTYGAAGTGGANGANGDYYRDVD 350 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397 Y + DN KL++ ++A+ VN +S ++ S A Sbjct: 351 YLVGYIKKQIEKDNVKLQKATVAITVNDSN------------LTESKKQQLIDAASKAAN 398 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457 I I F + + + + + + + ++ Sbjct: 399 IAPE-----DIVVSSFQQIASDKTPEPEKPVIPVTAPGVGGIDPRILIAGAAA------- 446 Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517 + + G D + LD + S Sbjct: 447 ------GIFLFLVLLFLILRHRKKKQRKEDQELFGPFEGDAVELDRDIAERAEESAVENR 500 Query: 518 RINSYVS-KQSDLRLLHMIEINEERFAKILRKWARSE 553 N V + ++ E N E A ++ W + + Sbjct: 501 LTNIPVKPQDPVNQVRSFAEDNPEIIASMISNWLKED 537 >gi|323174686|gb|EFZ60306.1| flagellar M-ring protein domain protein [Escherichia coli LT-68] Length = 173 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 G++ F +++ RALEGE++RTI++I + ARVH+ MP F + P+ASV Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASV 173 >gi|323186389|gb|EFZ71738.1| flagellar M-ring protein domain protein [Escherichia coli 1357] Length = 173 Score = 180 bits (455), Expect = 8e-43, Method: Composition-based stats. Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 2/175 (1%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + + L + L + + +A + +P Y L+ L D Sbjct: 1 MNAAAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 I L++ NI +R S+ +I VP+ V + R+ LA QGLP + G+EL D+ F Sbjct: 61 GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 G++ F +++ RALEGE++RTI +I + ARVH+ MP F + P+ASV Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASV 173 >gi|283782092|ref|YP_003372847.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like protein [Pirellula staleyi DSM 6068] gi|283440545|gb|ADB18987.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like protein [Pirellula staleyi DSM 6068] Length = 553 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 78/579 (13%), Positives = 160/579 (27%), Gaps = 55/579 (9%) Query: 1 MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEV 57 M ++ Q + S+ L +++V ++ + + + L Sbjct: 1 MDFFNKAAAQLTELVRSMSPGTRLATGLLLIVVVVSIGYLFQYQVTSGDEYLLDGRPFSG 60 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDK 116 +++ I A ++A + + + +G+ I +P LA LP+ E Sbjct: 61 AELTNIESAFAQAGLG-KSTVDGNRIRIPRGQKEIYLAALAENDALPADFYRYLDEAAAS 119 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 F + M+ + + A + E+A I + G+ AA V G + + + Sbjct: 120 DTPFTSSRSME-MKKWNAKQKELALIISRMKGVEAATVQYDEELKGGLTRSKQKTAMVAV 178 Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---- 232 A ++IR+++A+A LD D+TV D T L + Sbjct: 179 QTAGGALEDAQLKSIRNVIASAYAGLDRRDITVTDMTSGLSYGGGSSTDGSMSEEDSIYA 238 Query: 233 -IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291 Q + + + I LA G V EL+ + + + V Sbjct: 239 AHKQKYERDWQRKIADQLAMIPG---VIVGVNVELSPELSHQSQTIKLDAKPVAVESNEF 295 Query: 292 KDAQRSETSQPESAVTVEQNMPHVSD---RKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 Q S + P N + ++ + E N + Sbjct: 296 TKEQSSTSPSPAGRPGAIPNGVGNQPVAVNNTSSANESQTSESRSEVRN-VPGHEQTVMK 354 Query: 349 HDNYKLERLSIAVV--------VNKGRLTEVLGRSADQGKIDSYLA-------EINKIVS 393 ++ ++ + + R + G Q ++ + V Sbjct: 355 RAPLVPTVVTASIDIPASYFTRIWRERNPQPAGAPPKQPDAAEIAKIETETKGKVQETVR 414 Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 S+ + ++ L S + S + + F + L L + Sbjct: 415 NLLPPVSQGTNPYPHIAVA-TYTDLPGSPMPEASIAETATAWFGSNWQTLAVLGVGMFAL 473 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 + R L K + + N Sbjct: 474 VMLRSMTRPLPLPPAPANASSSLKIADTDADDDEEAASPASALRRRLAGGPN-------- 525 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 L M++ + + A ILR W Sbjct: 526 -------------IKDELRDMVKEDPDAAANILRNWIGD 551 >gi|87307391|ref|ZP_01089536.1| probable polar flagellar M-ring protein FliF [Blastopirellula marina DSM 3645] gi|87290131|gb|EAQ82020.1| probable polar flagellar M-ring protein FliF [Blastopirellula marina DSM 3645] Length = 546 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 92/575 (16%), Positives = 186/575 (32%), Gaps = 58/575 (10%) Query: 1 MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEV 57 M L++ Q S+ +I +I+V + F H L ++ Sbjct: 1 MDFLNKAFEQIKDLFFSMTPGSRIIAGLLIVVIVASFAFLFQGGMFEHDAALLAGAAVDP 60 Query: 58 SDVNRISVALSEANID-FRISDNGSSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFD 115 +D + A + +D +RI GS I +P + + + +P S + D Sbjct: 61 ADQKAVLAAFAGEGLDDYRI--EGSQIYIPRAKRAEYVAAMVKHNAIPPEFHESMEDAVD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 N F + + + A E ++A ++ + GI A VH + D G F + TASV Sbjct: 119 NANPF-ESEQHRSDRQKIAKEKDLALVLRKMRGIEFASVHYDVEDKGGFPR-RKVYTASV 176 Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 ++R + +IR+ VA ++ L V+V D + + + E + Sbjct: 177 VVRPLGSEEIDQALVRSIRNYVAYSIAGLSSEHVSVTDLNSRRTYSGDTENPAEDAYAAR 236 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 Q ++ + I AL G V EL+ Q E + + K Sbjct: 237 KQFFENSWQDKIAAALNYIDG---VNVTVNVELDPKMNQREERLEHGARPIALLTSAQKR 293 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 + S+ + + P+ P + ++ E++ + + + + Sbjct: 294 TESSKVPKEGGRPGLAAQAPNQQAELTTAPARESSMEESSEETASVTDKTLMLSETASLT 353 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGIN------- 399 +++ + V V + + + L +I + V + Sbjct: 354 PQQVRVVVTVPQDYYAGIWNKQNPPALGAQPTTPDAGVLKKIEEEVKKSIESQVVTLLPP 413 Query: 400 SRRGD----TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GD + +TS+ + + + + L ++ TV V L L+ Sbjct: 414 QPPGDDPYPQVHVTSVTRTDQPTLAEPALADTAILWLGANWQTVAMIGVGLFALLM---- 469 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 LR + + + +PP G M + Sbjct: 470 ----LRSMVRSQPDEPKIDNSIRLATPPQEEEEDDAGDMSG------------------M 507 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + + S L+ M+ + + A IL+ W Sbjct: 508 LKKRFTKNSPNLKDELIEMVREDPDTAAGILKNWI 542 >gi|160939666|ref|ZP_02087014.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC BAA-613] gi|158437457|gb|EDP15221.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC BAA-613] Length = 535 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 81/518 (15%), Positives = 170/518 (32%), Gaps = 43/518 (8%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 N+ Y L+ + + N I L + + +D G ++VP +G I ++ G P Sbjct: 51 NAGSYVTLFPGISREENNEILAVLGGRGVAAKRNDEG-EVTVPEDQLGDIMIEMSELGYP 109 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 ++ +++F F T F + + L+ + RT++ ++GI A V + +PD + Sbjct: 110 KTALP--FDIFSDNMGFTTTEFEKRQYLLMNLQDRLERTLKDMTGIKNAIVTLNVPDESA 167 Query: 164 FRKIGARP----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 + + S+ + + AI++LVA +VP L VTV+++ Sbjct: 168 YVWEDEDSGSTGSVSLTLMPSYDLSPEKVSAIKNLVADSVPRLAPERVTVVNAETMQEMV 227 Query: 220 NEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 ++ N L ++ ++ I L D R + ++ D + Sbjct: 228 SDDIGNTAYGLNRLDFEAKVEERLQNKIKNVLTLAYSPDKIRVSATVVIDYDKMITENLE 287 Query: 278 YDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335 Y+P + + E N + + + T Sbjct: 288 YEPQENGQGVVDHYRESRGVAGGQIGAGGIAGEENNTDIPAYGTAGTGGTAQGTGDYYRD 347 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +Y ++ DN KL++ ++A+ VN LTE + + IV ++ Sbjct: 348 VDYLVSYIKKQIEKDNVKLQKATVAITVNDDNLTESKKQQLIDAASKAANIAPEDIVVSS 407 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 + E + +D + I A ++ LL+ FL Sbjct: 408 FREVPK-------------ETAPAKPALPVQAPVDTGIDYRTIAIAAGAGILLFLLILFL 454 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 RR +D + + + + ND + Sbjct: 455 IFGRRRRRQMKEDQELFAPFEGEVPPSADMEERAEEAAVQNDLGRMQV------------ 502 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + ++ ++N E A ++ W + + Sbjct: 503 -------NPEDPVEQVRSFAQMNPEIIASMISSWLKED 533 >gi|47566129|ref|ZP_00237167.1| flagellar M-ring protein, putative [Bacillus cereus G9241] gi|47557046|gb|EAL15376.1| flagellar M-ring protein, putative [Bacillus cereus G9241] Length = 515 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 74/559 (13%), Positives = 183/559 (32%), Gaps = 60/559 (10%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL L++ + +L + A +F Y +Y L +D I+ Sbjct: 1 MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 LS+ +D++++ +G SI V + R + GLP +S SG E+ + +S G + Sbjct: 59 LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115 Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182 +++ ++ + ++ + I ++ + + A V I +P+ + +V ++ Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175 Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237 I+ +++AAVP + +V+V+DS +++ E + K + + I Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235 Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297 + +++ +I+ L + ++ +N D + Y + + + Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEETSTAQ 295 Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357 E + + + N + + + YEI+ +L + Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNKNGNKIEN-------YEIDKTVETIKKHP-ELTKT 347 Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITSMD 412 ++ V V+ L + + + A G+ + + + ++ Sbjct: 348 NVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVTVQ 397 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + ++ I A + +G L+ L Sbjct: 398 F---DQPKEEKPKEPEESGINWWLFGGIPAGLLAIGGLVWFLL----------------- 437 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 + + + D ++ Sbjct: 438 ---ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQ 494 Query: 533 HMIEINEERFAKILRKWAR 551 + + E AK+++KW Sbjct: 495 DATKEHVEGTAKVIKKWLN 513 >gi|224174161|ref|XP_002339855.1| predicted protein [Populus trichocarpa] gi|222832385|gb|EEE70862.1| predicted protein [Populus trichocarpa] Length = 312 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 7/215 (3%) Query: 1 MAI----LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56 M + ++ Q+F SL TR L L ++I V + ++ F+ P LY L+ Sbjct: 99 MNMPLLNAEKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLD 158 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 + L A I F + I+VP + AR+ LA GL + S G+EL ++ Sbjct: 159 QKATAEATDLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMER 217 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 FG++ F++ ALE E++RTI ++ + +RVH+ +P +F + +ASV Sbjct: 218 DPGFGVSQFVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVT 277 Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 + +AI H+VAA++P+L VTV Sbjct: 278 LELRGGQQLERSQVDAIVHMVAASIPDLAPERVTV 312 >gi|168334544|ref|ZP_02692700.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype B'] Length = 459 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 67/486 (13%), Positives = 153/486 (31%), Gaps = 40/486 (8%) Query: 79 NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 +G +I V + A+I L + +P + NS T + + + + Sbjct: 6 DGRTIQVNEEDLNTAKIILTRENVPRGDYTFYDAI---TNSMSTTEAEKRTKLIYLKQVD 62 Query: 139 IARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA 197 + + + GI A V + +P+ SF +ASV++ E I L++ Sbjct: 63 LENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLSN 122 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 AV NL + ++T+LDS +L + + S+ + + +I + L+ D Sbjct: 123 AVDNLKLENITILDSDSNVLFSGDEFGEMTASDQQSLKSSAEKDIVNKLTTLLSPIY--D 180 Query: 257 NFRSAVVAELNMDTQQIREI---VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 + L+ D + + DS+ + S+ + Q A ++ N+ Sbjct: 181 EVAISPNLILDFDYFEQTKEEYTTPITDSQTGLVDQESRRNYEATNIQDGFAPGLDPNVE 240 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEV 371 V + S + Y+ N + ++ + +V +N K + + Sbjct: 241 DVPEYVAGNELSGNYEGGTSDII-YKHNKTLSNEIKNIGTIDYNNSSVAINLTKYNVYDE 299 Query: 372 LGRSADQGKIDSYLA-EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 ++ ++ V+ + D I + + Sbjct: 300 ALLEDTLPDDQTWAEFKLANDVTNILVVEQATIDAIK-MGAGLENVAVIAYEKPVFIDKE 358 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + VI ++ L ++ + + + + + + E ++ P Sbjct: 359 PFTLQTEDVIPYILLLALGAVIVVVMIRFRKPVEEVVTEDEFEFEDLLPVAGPEEEEE-- 416 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 + I ++ ++ I+ E A +LR W Sbjct: 417 -----------------------DSLQDIELKEVIETKAKIDKFIDEKPEAVAGLLRNWL 453 Query: 551 RSEIED 556 + D Sbjct: 454 EEDWGD 459 >gi|88800454|ref|ZP_01116018.1| flagellar M-ring protein FliF [Reinekea sp. MED297] gi|88776784|gb|EAR07995.1| flagellar M-ring protein FliF [Reinekea sp. MED297] Length = 318 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 123/339 (36%), Gaps = 31/339 (9%) Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285 + + + ++ + +N L+ +G D F++ V A+++ + E +++PD + Sbjct: 1 MTNRQFEYQRKVEESMLARVNSILSPIIGGDKFQAEVSADIDFTKVEQAEELFNPDLIAK 60 Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYE 339 RS + + + E N P + + E NYE Sbjct: 61 RSEQTISEERVGEEQ--GGIPGALTNQPPTDAEAPEEVDGQGQANGPPRSSRDEATINYE 118 Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGI 398 ++ T ++ RL++AVVV+ +T+ G + Q ++ L + +V A G Sbjct: 119 VDRTLSYTQFQQGRVRRLTVAVVVDDLEVTDPETGETVTQAWDEASLQRLRTLVQDAVGY 178 Query: 399 NSRRGDTITITSMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLVGTLLVTFL 455 ++ RGD+I + + +FL Q + F + ++ L V L Sbjct: 179 DASRGDSINVINSEFLAEQDAVEQVPFYAEPWFWE-----------IAKQILAGLFVLIL 227 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 LR AK + +S V L+ +D ++L + ++ Sbjct: 228 IFGILRPAVRNLLAKGEDEQAESDEDAALAQLDVDEDLIADDKVSLSAVDEYNLPGPSES 287 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 R L +I + R A +L++W S Sbjct: 288 FER--------QLDALRGLIAEDPGRVALVLKRWIMSND 318 >gi|74317106|ref|YP_314846.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF [Thiobacillus denitrificans ATCC 25259] gi|74056601|gb|AAZ97041.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF [Thiobacillus denitrificans ATCC 25259] Length = 381 Score = 176 bits (446), Expect = 9e-42, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 135/298 (45%), Gaps = 8/298 (2%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 L + R L LA +ILVP+ AA + N P Y LY +L + A Sbjct: 5 LSFLRELVAEASPWRRLTLALLILVPLGALAAAYIWFNPPAYRVLYGQLSDRVGGEVIGA 64 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L + I +R+S I VP + AR LAA GLP S ++ ++ ++ SFGL+S Sbjct: 65 LEQLGIPYRLSAGDGRIEVPVDTLHVARYRLAALGLPRSDADVEADV-ERAPSFGLSSLQ 123 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184 Q+ + RALE E+AR+IQS+ + ARVH+ +P + F + R TA+V++R Sbjct: 124 QQQRQQRALEHELARSIQSLEAVELARVHLALPKVSPFLRDAPRATAAVLVRLRPRAQLS 183 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244 + I+ LVAAAVP + DV VLD G +L E + A++ ++ Sbjct: 184 TEQVTTIQTLVAAAVPRMKRADVQVLDPRGVVLGGAAPEIEPS-----LRVALEQDLARR 238 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302 L +LG + V A L T + + ++ L K + + + Sbjct: 239 ALAVLTPWLGAERVSVQVTATLEDATTRETVERMRRVAGEGQARPLEKTVRTTVEPEG 296 >gi|325473786|gb|EGC76974.1| FliF protein [Treponema denticola F0402] Length = 567 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 96/600 (16%), Positives = 209/600 (34%), Gaps = 80/600 (13%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY----VK 54 M + +F + + I+ VI++ ++L + + + P + Sbjct: 1 MNEKFNNLKTKFGTLWGKWTKLQKGIIIGVIVLALVLVVVLGRWSSKPTSVPVIDMAITD 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSSSSNSGY 111 +++ D RI + ++E N+ IS +G ISV + R+ L +P ++S Sbjct: 61 VDLRD--RIILRINEENVKTTISSDG-IISVADEATAR-RMRTILLREDLIPKNTSPW-- 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 F V + T F +EI RA+ E+ R ++++ I A V + +P+ F Sbjct: 115 -AFFDVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPA 173 Query: 172 TASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----M 222 TA+V+I S + E I+ ++ AVP L D+T+ D++G L E Sbjct: 174 TATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDAD 233 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQ---------- 271 ++ K + ++ + NI L G D R V +++M + Sbjct: 234 RLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPT 293 Query: 272 ---QIREIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 + DS+V +S+ +S + P+ + E P Sbjct: 294 VIKEDNPETSYDDSQVVQSVTVSSENATTVWEGSGINPQGPMGTEGQTPP---SYQDTRN 350 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG----------- 373 + + + + N+ +++ I K+ R +++V ++ + Sbjct: 351 LVGRSTQTITKENHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVI 409 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + + + KI+ A G ++ R D++++ ++ F + L Sbjct: 410 EREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LEDKEYFKALQ 467 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 R +++ + +L+ F+ + R + E + Sbjct: 468 RQTIFLLSLA--GIALILLFFILYRIISREIERRKRLREEELLRQAQLERERMLY----- 520 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D ++ + ++ ++M + E A ++R W E Sbjct: 521 -------------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVALLIRTWLMEE 567 >gi|296123331|ref|YP_003631109.1| secretory protein YscJ/FliF family protein [Planctomyces limnophilus DSM 3776] gi|296015671|gb|ADG68910.1| secretory protein YscJ/FliF family protein [Planctomyces limnophilus DSM 3776] Length = 532 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 100/552 (18%), Positives = 189/552 (34%), Gaps = 40/552 (7%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEVSDVNRISVALSEANIDF 74 + + + L L+ + F + N+ L ++ AL EA + Sbjct: 1 MNSAQRISLIVAPLILLAGFGFLYWSNNTSGMVALSWGKVFTTEELIAAEHALMEAGLT- 59 Query: 75 RISDNGSSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 G + VP++ + L +P + + ++ ++ F +T + R Sbjct: 60 DFQRQGRMLLVPAAEKDRYNAALLEFDAMPEDLGSQLLKHYESLSPF-ITEKQRHEMREA 118 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191 L E+A+T+++I + ARV I P+ + TA+V I + +I Sbjct: 119 MLLKEVAQTLKAIPNVEDARVVIANPNRRNSWSQKGTVTANVTITPKKGRELSTRLVASI 178 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQHEIEMNINKALA 250 R VA+ VP+L DVTV D ++ A + + L L ++ + + E I+K+L+ Sbjct: 179 RAAVASMVPDLKTSDVTVFDPVNEVTYAGDAADDPLSSQLVQRIRELTKQYESQISKSLS 238 Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310 GV N V E N+ + IR DP P Sbjct: 239 YIPGV-NVTVHVDIE-NLKSSVIRTQQIDPKKSAPVISNEFTVNDTQTQRAPRGEPGQVA 296 Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSN---YEINTKSIATTHDNYKLERLSIAVVVNKGR 367 N P R+ + T+ N +EI+ K ++SI+V + R Sbjct: 297 NRPASVGGSAGSDRNRQMTESDNRVVNGVSFEIS--EKQLLAAMPKAVQVSISVPRDYYR 354 Query: 368 LTEVLGRSADQGKID-SYLAEINKIVSAATGINSRR-------GDTITITSMDFLENQLF 419 +A + + + I K V A+ + R D I ++++D L +L Sbjct: 355 GIAAQRTAAGEKDPALTEIPAIEKEVLASVSKSVNRLIPADSPDDAIVVSTVDTLAKELP 414 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 R + + + F + + + R A+ G S Sbjct: 415 TVTIPWTETAWQFFREYGSTMALGAFAIYVAM--------MLRKSMGSLAQANASPGDSR 466 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + P +A+++ + +R +L ++ N Sbjct: 467 TDNANGMNPLNPSGGPEAAMAMNALQGASAALPPKPATR---------RDQLQAIVRDNP 517 Query: 540 ERFAKILRKWAR 551 E A +L KW + Sbjct: 518 EATAALLGKWIQ 529 >gi|149178729|ref|ZP_01857312.1| probable polar flagellar M-ring protein FliF [Planctomyces maris DSM 8797] gi|148842427|gb|EDL56807.1| probable polar flagellar M-ring protein FliF [Planctomyces maris DSM 8797] Length = 538 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 88/574 (15%), Positives = 171/574 (29%), Gaps = 60/574 (10%) Query: 1 MAILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY--VKLEV 57 M + ++ QF ++ ++ IL SV L+ ++ F F + Y +L Sbjct: 1 MDTIKKIYQQFSNLFQTMSGSQRAILLSVPLLMMLAFGFLFFRDSQSSYVSLSLGKDFTT 60 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDK 116 +V L A + S G I VP + V + L G LP+ ++ E F+K Sbjct: 61 EEVIHAEEVLLRAGLT-DFSRKGQRIMVPQNEVPRYNAALIEGGGLPTDWASEWQEQFEK 119 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + F +Q + R AL ++ R I++I I A V + + Sbjct: 120 SSMFVSKDQLQ-VMRDIALGNQLRRMIRAIPAIEDASVMWARSKKRLRWNNTTPEVTATV 178 Query: 177 I---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST-GKLLTANEMERNILGKSLS 232 + R ++R V+ VP+L VTV D + G TA++ K +S Sbjct: 179 MVKPRPGRELTPVLVTSLRAAVSTMVPDLTTDSVTVFDQSTGTSFTADDKNEAFDSKFIS 238 Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292 V + I +L+ D + V N+ R+ D V + Sbjct: 239 WVNKHTKNYQDKILDSLSYI--PDVIVNVNVDVENLKRYVERKQEISTDGSVTLQSKEQS 296 Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE-QSNYEINTKSIATTHDN 351 + + N P+ ++ + T+ E + Sbjct: 297 TERSLVEKPTRAEPGARSNQPNSLAVARGNEKNEKVTETNNEATTAPSFTWTEKEFVAAM 356 Query: 352 YKLERLSIAVVVNK------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGI------- 398 ++S+++ + R + AD A I V + Sbjct: 357 PSTVQVSVSIPEDYYSAVALKRGIKKGEAEADIAAFKQATAAIQTEVETSIQKHVQKLIP 416 Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + D +++ S ++ ++ + + + + +F + L + Sbjct: 417 SQSATDAVSVASYVRVDAEVPEIALPLTESVGEFVSQWGSTLGLGLFAIWALWML----- 471 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + M N S + Sbjct: 472 -----------------------------NKSMPQMEEVNSEEIDLPLKRPVDSTPEEES 502 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + ++ N E A +L KW S Sbjct: 503 VKPKKEPTQRDEVQLLVRDNPEVAAMVLSKWIHS 536 >gi|2105148|gb|AAB57899.1| FliF [Treponema denticola] Length = 567 Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 93/596 (15%), Positives = 205/596 (34%), Gaps = 72/596 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY----VK 54 M + +F + + I+ VI++ ++L + + + P + Sbjct: 1 MNEKFNNLKTKFGTLWGKWTKLQKGIIIGVIVLALVLVVVLGRWSSKPTSVAVIDMAITD 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSSSSNSGY 111 +++ D RI + ++E N+ IS +G ISV R+ L +P ++S Sbjct: 61 VDLRD--RIILRINEGNVKTSISSDG-IISVADVEATARRMRTILLREDLIPKNTSPW-- 115 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 F V + T F +EI RA+ E+ R ++++ I A V + +P+ F Sbjct: 116 -AFFDVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPA 174 Query: 172 TASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----M 222 TA+V+I S + E I+ ++ AVP L D+T+ D++G L E Sbjct: 175 TATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDAD 234 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQ---------- 271 ++ K + ++ + NI L G D R V +++M + Sbjct: 235 RLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPT 294 Query: 272 ---QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 + DS+V +S+ +S + + + + Sbjct: 295 VIKEDNPETSYDDSQVVQSVTVSSENATTVWEGRINPQGPTGTEGQTPPSYQDTRNLVGR 354 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377 + + + N+ +++ I K+ R +++V ++ + Sbjct: 355 STQTITKENHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYINLNGVIEREY 413 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 + + + KI+ A G ++ R D++++ ++ F + L R Sbjct: 414 KPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LEDKEYFKALQRQTI 471 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 +++ + +L+ F+ + R + E + Sbjct: 472 FLLSLA--GIALILIFFILYRIISREIERRKRLREEELLRQAQLERERMLY--------- 520 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D ++ + ++ ++M + E A ++R W E Sbjct: 521 ---------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVALLIRTWLMEE 567 >gi|42526724|ref|NP_971822.1| flagellar MS-ring protein [Treponema denticola ATCC 35405] gi|41817039|gb|AAS11733.1| flagellar M-ring protein FliF [Treponema denticola ATCC 35405] Length = 567 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 96/600 (16%), Positives = 208/600 (34%), Gaps = 80/600 (13%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY----VK 54 M + +F + + I+ VI++ ++L + + + P + Sbjct: 1 MNEKFNNLKTKFGTLWGKWTKLQKGIIIGVIVLALVLVVVLGRWSSKPTSVAVIDMAITD 60 Query: 55 LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSSSSNSGY 111 +++ D RI + ++E N+ IS +G ISV + R+ L +P ++S Sbjct: 61 VDLRD--RIILRINEENVKTTISSDG-IISVADEATAR-RMRTILLREDLIPKNTSPW-- 114 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 F V + T F +EI RA+ E+ R ++++ I A V + +P+ F Sbjct: 115 -AFFDVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPA 173 Query: 172 TASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----M 222 TA+V+I S + E I+ ++ AVP L D+T+ D++G L E Sbjct: 174 TATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDAD 233 Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQ---------- 271 ++ K + ++ + NI L G D R V +++M + Sbjct: 234 RLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPT 293 Query: 272 ---QIREIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPR 324 + DS+V +S+ +S + P+ E P Sbjct: 294 VIKEDNPETSYDDSQVVQSVTVSSENATTVWEGSGINPQGPTGTEGQTPP---SYQDTRN 350 Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG----------- 373 + + + + N+ +++ I K+ R +++V ++ + Sbjct: 351 LVGRSTQTITKENHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVI 409 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 + + + KI+ A G ++ R D++++ ++ F + L Sbjct: 410 EREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LEDKEYFKALQ 467 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 R +++ + +L+ F+ + R + E + Sbjct: 468 RQTIFLLSLA--GIALILIFFILYRIISREIERRKRLREEELLRQAQLERERMLY----- 520 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 D ++ + ++ ++M + E A ++R W E Sbjct: 521 -------------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVALLIRTWLMEE 567 >gi|218512857|ref|ZP_03509697.1| flagellar MS-ring protein [Rhizobium etli 8C-3] Length = 316 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 166/316 (52%), Positives = 233/316 (73%), Gaps = 3/316 (0%) Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 P++G+FRK +PTASVMIRA + +A +IRHLVA+AVP LD+ DVT+LDS G+LL Sbjct: 1 PEVGNFRKAEQKPTASVMIRASAATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLA 60 Query: 219 ANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277 + + N +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E Sbjct: 61 SGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETT 120 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQ 335 YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P + P S + +DK+EEQ Sbjct: 121 YDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQ 180 Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395 +NYEIN+++ ATT ++YK+E+LSIAVVVNKGR+ +++G ADQ KID+YLAE+ KIV++A Sbjct: 181 TNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASA 240 Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 GI+++RGD +T+T+MDFLENQL T V MD+LSR+ A +IN+L F+ +V ++ Sbjct: 241 AGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWM 300 Query: 456 GLHALRRLHNIDDAKK 471 GL L R + + A Sbjct: 301 GLRPLVRSVSGNGASA 316 >gi|328947994|ref|YP_004365331.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489] gi|328448318|gb|AEB14034.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489] Length = 568 Score = 173 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 100/597 (16%), Positives = 206/597 (34%), Gaps = 73/597 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LE 56 M L + + I+A++I+V I + + + P L+ + Sbjct: 1 MNEWFKKNLETIKEKWAKWTTLQKAIVAAIIVVAIAVIVLMASMSSRPSTVRLFNGPVND 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115 + I L + N+ +S + ISV +S + K R L A+G SS ++ Y LFD Sbjct: 61 EKERELILSRLDQDNVKAYVSSDNY-ISVENSDIAKKYRSRLIAEGYAPSSLDA-YSLFD 118 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 V + T F ++ RA E + + ++S+ GI A V++V+PD F + +AS+ Sbjct: 119 -VTRWSRTDFDDKVNWQRATETALKQQLESLDGIQRAEVNLVLPDEALFTENQNPTSASI 177 Query: 176 MIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--- 228 ++ A S + I++L+ A V L ++ + D + + Sbjct: 178 VLYAKGNSDVLTDKRKIRGIQNLIKACVEGLRDENIVINDGASNVQINDFEGMAESDRIS 237 Query: 229 ---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVY------ 278 K ++ + + KAL D R + ++NM ++ Y Sbjct: 238 NIEKQRKLILKQETTYTGLVLKALKGTFSDDRVRVANIKIDMNMSERKTTSKEYTGITIR 297 Query: 279 --DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 +P++ S + PE VE P V + Sbjct: 298 PDNPNTPYDDSEIVNSLTLSEETVNKSFTGTGYNPEGPAGVEGQNPPVYSDMS---NVVG 354 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSA 376 + ++ + NY +N K+++ +++R++++V ++ + Sbjct: 355 KSTEEGVKRNYALNEKNVSEITSP-QIDRITVSVNIDGQWRKVYDENNRPILENGHLKRE 413 Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436 L K+V A G N RGD++T+T++ F + ++++ L+R+ Sbjct: 414 YIPITPEQLVNTTKLVQDAVGYNKSRGDSVTVTNIPFDRTE--EQEKEDLAYIAQLNRN- 470 Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496 L + + A + + + Sbjct: 471 --------------RTIMFSLIGIAIILIAFIAFRIISREIERRRRLAEEARIRQQEEER 516 Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 L++ Q + + + + M + + E A ++R W E Sbjct: 517 QRALLEAQQQGMEVTMS-----VEERKRAELQENAIAMAKEHPEDVAMLIRTWLMEE 568 >gi|256112170|ref|ZP_05453091.1| flagellar MS-ring protein [Brucella melitensis bv. 3 str. Ether] gi|256261971|ref|ZP_05464503.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|265993596|ref|ZP_06106153.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str. Ether] gi|262764466|gb|EEZ10498.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str. Ether] gi|263091455|gb|EEZ15991.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9] gi|326411310|gb|ADZ68374.1| flagellar MS-ring protein [Brucella melitensis M28] gi|326554599|gb|ADZ89238.1| flagellar MS-ring protein [Brucella melitensis M5-90] Length = 333 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 167/321 (52%), Gaps = 2/321 (0%) Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 1 MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIA Sbjct: 61 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL+ Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 180 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 299 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 300 ERVAAVLKQWIHETASGREAD 320 >gi|91791422|ref|YP_561073.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217] gi|91713424|gb|ABE53350.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217] Length = 439 Score = 171 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 90/457 (19%), Positives = 186/457 (40%), Gaps = 45/457 (9%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 T+ + + ++L + ++V L+ L + + + L + I +++ Sbjct: 8 TKKMRFFIAGISLMLLTLITLWWVIQDSKQVLFSGLSQATLTEYTAKLEASGIGYQV--E 65 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G+SI V SS +AR+ A + S++ +G+EL++ + G T Q +RAL+GEI Sbjct: 66 GTSIFVASSDSNQARVV-AMEDSIQSNNVTGFELYENSD-LGATERAQHANYLRALQGEI 123 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAA 197 RT+ + I ARVH+ +P F ASV + ++ ++ EAI+ LV + Sbjct: 124 ERTLTGFNYIKKARVHLTLPQKRLFMSQNQLTKASVTLFTVDHYQPRTIDIEAIKQLVVS 183 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257 AV +L + V V+D G+ E + ++ +L++ ++ + +E + + L A+ + Sbjct: 184 AVEDLTIDQVVVIDGAGQ-WGVFEPQGDLSSPNLALRRSTESYLEQKVLQVLVAYFSASS 242 Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 +AV ELN DT +I E + I + + Sbjct: 243 ISAAVAVELNTDTVKIHETKAIKGDGSQGLISSETKFEETH------------------- 283 Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 + + + Y + T ++ RL+ AV +N Sbjct: 284 ---LSDDNKPGSKTLRNEVTYAHGALTQETEQAPGQILRLTAAVSIN------------- 327 Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437 A+I++++ G +S+R D+I+++ F ++ ++ ++ + Sbjct: 328 AEVAPELQAQISELIKNTIGFDSQRDDSISVSF--FYLPKVEPLPVTPMAVEPVVVKTVE 385 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + FL+ L F + L N D+ + ++ Sbjct: 386 SNTWW-PFLLIGLGTLFSLSTGMFYLANKRDSTEQQL 421 >gi|17988496|ref|NP_541129.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M] gi|256042873|ref|ZP_05445819.1| flagellar MS-ring protein [Brucella melitensis bv. 1 str. Rev.1] gi|260564110|ref|ZP_05834595.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M] gi|265989308|ref|ZP_06101865.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1] gi|17984287|gb|AAL53393.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M] gi|260151753|gb|EEW86846.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M] gi|262999977|gb|EEZ12667.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1] Length = 333 Score = 170 bits (429), Expect = 8e-40, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 168/321 (52%), Gaps = 2/321 (0%) Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 ++ +I KALA +LG+ +F+++V A L+ D +Q +E YDP+S+VERS+R+ +++ S + Sbjct: 1 MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360 + ++A VEQN+P + S E TD++EE +NYE+N+ +++T D Y ++RLSIA Sbjct: 61 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120 Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 VV+++ RL + G + +D + +I +V+ A G+N+ RGD I +T+++FL++ Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 180 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + V + D L R + NAL L L+ + GL L R N+ A ++ Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 P + + + S + + + LRL MIE++E Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 299 Query: 540 ERFAKILRKWARSEIEDRYTQ 560 ER A +L++W R Sbjct: 300 ERVAAVLKQWIHETASGREAD 320 >gi|32474826|ref|NP_867820.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica SH 1] gi|32445366|emb|CAD75367.1| probable polar flagellar M-ring protein FliF [Rhodopirellula baltica SH 1] gi|327539960|gb|EGF26559.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica WH47] Length = 545 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 72/559 (12%), Positives = 167/559 (29%), Gaps = 26/559 (4%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 + L QF +++ +I ++ I+ ++P + L S+ Sbjct: 2 LQTALDQFRSIYSTMPVPSRIIAGLLLTAIIVAMGFLVRGNSTPSSEYLLGGRSFSER-- 59 Query: 63 ISVALSEANIDFRISD------NGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115 L A + F +D G I +P + + ++ LP S S + Sbjct: 60 ---DLDAAEVAFGNADLRGWTREGRRIKIPIESRSEFLKALESSASLPLSLRTSVQAAIE 116 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 K + F + A +IAR+I + ARV + + + + Sbjct: 117 KSSPFESNE-QRMARERNAKLLDIARSIMMFDEVRTARVEYDQGERMGLSRTRPQSASVT 175 Query: 176 MIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234 + P I+ LV AA + DV V D+ G + + L + Sbjct: 176 VEPEGIAPLSRDRIFQIKDLVRAAFAGMSTDDVVVTDTNGSSAFGLAEDDDPLSRKRREE 235 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 + N +G A E++ + D + K Sbjct: 236 EERFEMKIRN------HLMGYGKIHVATHVEIDPTMSTETASLSYEDQPTTLNETSRKRE 289 Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI-NTKSIATTHDNYK 353 S P + N + + + K++E+++ + + T Sbjct: 290 TESSRPMPGGVPGAQTNALSSNRPVKLDATAQTSKTKEDERTSNRVAGQEYSTTRMAGLP 349 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++R+ +++ + + +V + + D + +I ++ + + +T Sbjct: 350 VKRVKVSIGLPRSYYKKVWTKQQLETNPDQTVDDIKQMETTDLVTLKEQTET---EIQQA 406 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + L + + F + + + + T + L + + Sbjct: 407 VTALLPDVAAGEDRFPLVQVWDYIDLPEPEMDSPATAAIALSWLSDSWQTLAMLGLAAAA 466 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 + +A T + L + + + +++ L+ Sbjct: 467 LLIARSSVKSLSGNADPTDFKEGFGLELPAPPIAVEEQTEKVEAM--EITGGSLQDELVA 524 Query: 534 MIEINEERFAKILRKWARS 552 ++E N E A ++R W Sbjct: 525 LVEDNPEVAANVIRSWVGE 543 >gi|88800453|ref|ZP_01116017.1| flagellar M-ring protein FliF [Reinekea sp. MED297] gi|88776783|gb|EAR07994.1| flagellar M-ring protein FliF [Reinekea sp. MED297] Length = 268 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 7/212 (3%) Query: 6 QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65 ++ L R L + I L + + Y L D + Sbjct: 50 RMHPLVVGFNKLTMMRQFGLLIGLAASIALGLGVVLWSQKETYRPLMNSTNSYDARELIE 109 Query: 66 ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125 L NIDF I + + V + + +AR+ +A GL S GYEL D+ G + F Sbjct: 110 VLQANNIDFDIDPSSGVLLVRQNDLHQARLAVAGAGL-SDDQTVGYELLDQDQPLGQSQF 168 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 M+ +R+LEGE+ARTI SI+ + ARVH+ +P+ F + TASV Sbjct: 169 MENARYLRSLEGELARTISSINQVKTARVHLAIPERSVFVRDRRETTASVFAELYAVLNL 228 Query: 186 KSAEAIRHLVAAAVPNLD------MGDVTVLD 211 + + ++ + +P L+ + ++V+D Sbjct: 229 PMTPSRQFVIWSRLPFLNCALKMFLSWISVVD 260 >gi|289678989|ref|ZP_06499879.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5] Length = 178 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 78/154 (50%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI++ + N ++ V S V +ARI LA G+ + +N G+E+ DK G + FM+ Sbjct: 85 AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 R LEGE+ARTI +++ + ARVH+ +P Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSS 178 >gi|257140592|ref|ZP_05588854.1| flagellar MS-ring protein [Burkholderia thailandensis E264] Length = 592 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 42 FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101 + +P Y LY L D I AL +AN+ ++ +D G +I VP++ V + R+ LAA G Sbjct: 78 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S G+EL D FG++ F +++ RALEGE+ RT++S++ + AARVH+ +P Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195 Query: 162 GSFRKIGARPTASVMIRAIN 181 F + P+ASV++ + Sbjct: 196 SVFVRDREAPSASVLVDLVP 215 >gi|254853083|ref|ZP_05242431.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503] gi|258606431|gb|EEW19039.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503] Length = 425 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 63/366 (17%), Positives = 142/366 (38%), Gaps = 19/366 (5%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ + +G+ I V + R A Sbjct: 33 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 92 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147 Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213 +P+ S + ++ ++ + + I+ V+AAVPN+ DV ++D+ Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207 Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269 +++ + + + I AI ++ +I L++ +DNFR +N D Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267 Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328 + + P+ RS + S+ S + N + + Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 ++K E +NYE+++ L + ++ V V++ L + A+ K A + Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385 Query: 389 NKIVSA 394 ++ Sbjct: 386 TPNMTT 391 >gi|257457887|ref|ZP_05623046.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580] gi|257444600|gb|EEV19684.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580] Length = 567 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 103/598 (17%), Positives = 212/598 (35%), Gaps = 76/598 (12%) Query: 1 MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58 M L Q + ILA+VI+ I++ + + P L V+ Sbjct: 1 MNEWFKKTLTQIKTLWGKWTPIQKGILAAVIVAAIVIIVLLASWSAKPSLVPLI-DTPVT 59 Query: 59 DVN---RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELF 114 D RI + L+E N+ +S +G ISV + R L + L +++ + LF Sbjct: 60 DATVRERIVLRLNEENVKATVSQSG-IISVNDEQTARRMRAILLREDLIPQNTDP-WALF 117 Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D V + T F + I RA+ E+ + I+++ + A V + +P+ F+ TAS Sbjct: 118 D-VERWTRTDFERNIDVRRAVIEEVRKHIKALDDVDDASVVVNLPEDKLFQADQNPVTAS 176 Query: 175 VMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERN 225 V++ S + E I+ L+ AV L ++T+ D++G +L + Sbjct: 177 VILYPKPGSDISTNRKKIEGIQKLLKYAVEGLTDDNITIADNSGNILNDFAGLKDFDRLS 236 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY------- 278 I+ K I+ ++ + E+ I L G D R + +++MD + Sbjct: 237 IIEKQQKIIAKLETQYEIKILNILQKTYGTDRVR-DLSIKIDMDMSEKTAETVEYLPFQL 295 Query: 279 ---DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 +P++ RS + + PE VE + Sbjct: 296 RADNPETPYDESEVRASVTRSSETATTTYQGTGFNPEGPTGVEG---QTAPSYKDTSNLT 352 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RS 375 + + ++N EI ++ + ++ R +++V ++ + Sbjct: 353 GLSTQSIVKTNEEIGSRRTSEIVSP-EMGRRTVSVNIDGQWRKKKDANGNLVIKDGQIER 411 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 D L + + V AA G ++ R D++++ ++ F L ++ + R Sbjct: 412 EYIPIPDDELQKATQAVQAAIGYSALRNDSVSVLNIQFDR--LAEFEKEDNAYFRSVQRQ 469 Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495 ++ + + LL+ F+ + + + Sbjct: 470 --RILLISLAGLALLLLIFIVYRIV--------------SREIERRKRLREEELLRQHQL 513 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 AL + Q S +++ ++ +++ + E A +LR W E Sbjct: 514 EREKALWEAEQAGMEVSMSVEEM----KRRELLENVINNAREHPEDVALLLRTWLMEE 567 >gi|289811515|ref|ZP_06542144.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 158 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 2/147 (1%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 + L + L + + +A + +P Y L+ L D I L++ Sbjct: 14 LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73 Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 NI +R ++ +I VP+ V + R+ LA QGLP + G+EL D+ FG++ F +++ Sbjct: 74 NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131 Query: 131 RVRALEGEIARTIQSISGIVAARVHIV 157 RALEGE+ARTI+++ + +ARVH+ Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLA 158 >gi|1184298|gb|AAA87352.1| flagellar MS-ring protein [Borrelia burgdorferi] Length = 475 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 76/498 (15%), Positives = 160/498 (32%), Gaps = 69/498 (13%) Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 R L + L + + LFD ++ + +T F + I R++ + + I ++ + A Sbjct: 2 RAILVREELVPVHMDP-WALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVS 59 Query: 154 VHIVMPDMGSFRKIGARPTASVMIRAINPS-----VYKSAEAIRHLVAAAVPNL--DMGD 206 V++VMP+ F++ ASV I K E + L+ + + + + Sbjct: 60 VNLVMPEKALFKESQEPVKASVRITPRPLVLIFITNRKKVEGLVKLIQP-ICHEGFESDN 118 Query: 207 VTVLDSTGKLLTANE-----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-S 260 + ++D++G +L ++ K + + + I+ AL+ L VD F + Sbjct: 119 IAIVDNSGTILNDFSNLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIA 178 Query: 261 AVVAELNMDTQQIREIVYDP-----------------DSKVERSIRLSKDAQRSETSQPE 303 V +L+ + Y P S + K + + P Sbjct: 179 RVNVKLDTSKETTESKEYAPIELQSQDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPW 238 Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363 E N P ++ +E N +N K + + ++ +S+ + V Sbjct: 239 GPPGQEGNTPPEYQDLSD---ITGKYNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFV 295 Query: 364 NKGR--LTEVLGR---------SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + + + G + + I ++ ++ RGD+IT+ ++ Sbjct: 296 DGIWNFVYDEKGDFVIENGMRKREYKPMALEEIKNIEDVLQSSFEYKPERGDSITVRNIS 355 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F F S F + + L++ F A+ R + Sbjct: 356 FDRMNEFREIDENY----FASERFKYFLFIASIVFSLLILVFTIFFAISRELERRRRLRE 411 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 E K + + D++ D + L Sbjct: 412 EELAKQAHLRRQQALMDGGDDIGVDDVVGGIREGDELQSNAEL----------------- 454 Query: 533 HMIEINEERFAKILRKWA 550 + E AK++R W Sbjct: 455 -LAREKPEDVAKLIRTWL 471 >gi|218508689|ref|ZP_03506567.1| flagellar MS-ring protein [Rhizobium etli Brasil 5] Length = 332 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 207/360 (57%), Gaps = 37/360 (10%) Query: 205 GDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263 DVT+LDS G+LL + + N +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V Sbjct: 1 DDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVT 60 Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-- 321 A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P + Sbjct: 61 ADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGAS 120 Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381 P S + +DK+EEQ +Y+IN+++ ATT ++YK+E+LSIAVVVN Sbjct: 121 GPESQDKSDKREEQIHYDINSRTTATTRNSYKVEKLSIAVVVN----------------- 163 Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441 ++A GI+++RGD +T+T+MDFLENQL T V MD+LSR+ A +IN Sbjct: 164 -----------TSAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIIN 212 Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDA------KKGEVGGKSILSPPPISSAVTTGLMP 495 +L F+ +V ++GL L R + + A E G + P A LM Sbjct: 213 SLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDATPEAAGLELPDFAPAVGAPGGALMD 272 Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + + N V + + +L M+EINEER AKILRKWA + Sbjct: 273 GFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKILRKWAIDDAA 332 >gi|218460680|ref|ZP_03500771.1| flagellar MS-ring protein [Rhizobium etli Kim 5] Length = 310 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 136/310 (43%), Positives = 196/310 (63%), Gaps = 8/310 (2%) Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 G+DNFRS+V A+LN D QQI+E YDP+SKVERS+R +K+AQ+S+ Q ++A TVEQN+P Sbjct: 1 GMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIP 60 Query: 314 HVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371 + S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+LSIAVVVNKGR+ ++ Sbjct: 61 QAAPDAGGAGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKLSIAVVVNKGRIAKM 120 Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431 +G ADQ K+D+Y+AE+ KIV++A GI+++RGD +T+T+MDFLENQL T V MD+ Sbjct: 121 VGEPADQAKVDAYIAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDM 180 Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG------EVGGKSILSPPPI 485 LSR+ A +IN+L F+ +V ++GL L R + + A E G + P Sbjct: 181 LSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGAGAALGDSSPESAGLELPDFAPA 240 Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545 + A LM + + + N V + + +L M+EINEER AKI Sbjct: 241 AGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKI 300 Query: 546 LRKWARSEIE 555 LRKWA E Sbjct: 301 LRKWAIDEAA 310 >gi|330982829|gb|EGH80932.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 317 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 48/333 (14%), Positives = 105/333 (31%), Gaps = 52/333 (15%) Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317 +++ V A ++ + ++PD RS + + QRS +S N P Sbjct: 1 YKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGGVPGALSNQPPGPA 59 Query: 318 RKVPLPRSL-----------------------------------ENTDKKEEQSNYEINT 342 + + + N+E++ Sbjct: 60 TAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDR 119 Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSR 401 T +L RLS+AVVV+ T G + + LA ++V A G ++ Sbjct: 120 SISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARFTRLVQDAVGFDAS 179 Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461 RGD++++ ++ F + F ++ V ++ L++ F L + Sbjct: 180 RGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIFILILVFGVLRPVL 235 Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 K+ G G + ND ++L + + Sbjct: 236 NNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSILLPSP--------T 284 Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + ++ + R A+++++W ++ Sbjct: 285 EGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 317 >gi|226313070|ref|YP_002772964.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599] gi|226096018|dbj|BAH44460.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC 100599] Length = 220 Score = 144 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 7/213 (3%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVAL 67 +F + + ++ + L ++ + + P Y LY + L ++ I L Sbjct: 11 RFTSKWNQFSKKQKWMILGISLFLLISLGLYIYIASQPVYKPLYNQKLSEQEIGTIKQEL 70 Query: 68 SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127 + I ++I+ NG+SI VP M + LAAQG+PS + + E+F ++ G+T Sbjct: 71 EASQIPYQITGNGTSIEVPEKMAQDVIVDLAAQGIPSQAGINA-EIF--SSTLGVTDRQF 127 Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSV 184 ++ + AL+ E+ + ++ + G+ +A+V I +P + + +I Sbjct: 128 DVMKKEALQQELRKMLERVKGVRSAQVMITLPQESVWVTETPDTATASVIVDVEPGTTLD 187 Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217 K ++ LV+ +VP L M + + D L Sbjct: 188 QKQINSLYLLVSRSVPKLPMEAIAITDQYSNPL 220 >gi|331009141|gb|EGH89197.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 444 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|226327718|ref|ZP_03803236.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198] gi|225203422|gb|EEG85776.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198] Length = 158 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Query: 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61 +++Q F + + L I +F+AA ++ SP Y LY L D Sbjct: 7 DVVNQKKGFNAIINRIKADPKIPLIIAGSAAIAIFVAAFLWLQSPDYKVLYSNLSDKDGG 66 Query: 62 RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121 I L++ N+ +R+S NGS+I VP + V + R+ LA GLP + +G+EL DK FG Sbjct: 67 EIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQAGLPKGGA-AGFELLDKE-KFG 124 Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIV 150 ++ F ++I RALEGE+ARTI+++ + Sbjct: 125 ISQFSEQINYQRALEGELARTIETLGPVQ 153 >gi|119503664|ref|ZP_01625747.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] gi|119460726|gb|EAW41818.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080] Length = 300 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 106/318 (33%), Gaps = 24/318 (7%) Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300 + I L LGV R+ V A+L+ + Y P++ + +S Sbjct: 1 MNDRIESILEPILGVGAARAQVTADLDFTRVESTSEQYSPETIMRSEQTTEDLTLKS--I 58 Query: 301 QPESAVTVEQNMPHVSDRKVPLPRS-----LENTDKKEEQSNYEINTKSIATTHDNYKLE 355 E A P + + + ++ N+E++ KL Sbjct: 59 AAEGAPGQLTEQPPGAADPDDAENAVAQAPSPTRESRKATRNFEMDKTISHVREVPGKLR 118 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLSIAVV++ + + +QG+ L EI +V A G + RGDT+++ + F+ Sbjct: 119 RLSIAVVIDYVTDEDGNRTALEQGR----LDEITALVREAVGFDDARGDTVSVINSPFVV 174 Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475 + AL+ L+ + +R L + Sbjct: 175 PEALEEIPEPGLLEQDWIWQAGKGALALIALLMLIFT------VIRPLIRYSTSYTPPPP 228 Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535 S P S G + +D +AL Q + + QS +++ Sbjct: 229 PPSDGLPQLASPMGADGGINDDTVALSGPAQAALPGT-------TTPAYHQSIAMARNVV 281 Query: 536 EINEERFAKILRKWARSE 553 R A +++ W ++ Sbjct: 282 NEQPARAAYVVKNWMATD 299 >gi|23011692|ref|ZP_00051978.1| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 285 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 122/295 (41%), Gaps = 15/295 (5%) Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 V AEL+++ + R +DP+S+V RS + + + ++ + +V N +++ Sbjct: 2 QVAAELDLNRVESRSESFDPESRVVRSTQTRSENSLTGGAEGQVSVG---NELPGANQNQ 58 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 P+ +++ K EE +NYEI+ + T + +L RLS+AV+V+ G+ Q + Sbjct: 59 AQPQQKDSSQKNEETTNYEISRVTKVETLEGGRLRRLSVAVLVDGVYAPGADGKPVYQPR 118 Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLE---NQLFNSGTVQVSFMDILSRHFA 437 D+ + I +V A G + RGD + + ++ F E F + S + Sbjct: 119 PDAEIERIAALVRTAVGYDKGRGDQVEVVNLRFAESPAAPDFAEPGLIQSLLSPTKEDVM 178 Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 ++ V + T++V + L R D G L+ A T + Sbjct: 179 RLVELAVLSLLTVIVLMAVVRPLLRRVLESDEPAALAGPAGALALAGAPGAPGTVEVVVR 238 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 A + +++N + ++ R++ M+ + ++LR W Sbjct: 239 ENA---------TKKFLDSAKLNGEIQAETVERVVDMVRASPSETVEVLRNWIHD 284 >gi|170738287|ref|YP_001779547.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia MC0-3] gi|169820475|gb|ACA95057.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia MC0-3] Length = 287 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 7/207 (3%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76 + ++ + + ++L +A + + LY L D N I AL +A ID + Sbjct: 1 MNARIRIVGRASVHACVVLCVALCIALAGCKQE-LYGNLSEQDCNEIVAALLQAGIDAKK 59 Query: 77 S--DNGSSIS--VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 D G + S V + + +A L GLP+ + +LF K + T + + + Sbjct: 60 ESADGGKTWSAKVDDAHIVQAMNVLREHGLPAHKYDDLGDLF-KKDGLVSTPTEERVRFI 118 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAI 191 + E+++T+ I G++ ARVHIV+PD +ASV I+ + + I Sbjct: 119 YGVSQELSKTLSQIDGVMVARVHIVLPDNDPLAMHVKPSSASVFIKYLPTANLAMIEPQI 178 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT 218 ++LV +V L V++ G L Sbjct: 179 KNLVVHSVEGLSYDKVSLTAVAGSPLD 205 >gi|315301967|ref|ZP_07872962.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] gi|313629662|gb|EFR97800.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] Length = 380 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 65/397 (16%), Positives = 134/397 (33%), Gaps = 32/397 (8%) Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGK 229 ++ + + I+ V+AAVPN+ DV ++D+ +++ + + Sbjct: 1 TLKTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTSKEEGSSAYKN 60 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + I AI ++ +I L++ +DNFR +N D + P+ RS + Sbjct: 61 EVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQ 119 Query: 290 LSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S+ S + N + + ++K E +NYE+++ Sbjct: 120 KDTSTDTSKGSTNTTESGTAANADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIK 179 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-------- 400 L + ++ V V++ L A+ K A + ++ G Sbjct: 180 KHP-ALAKTNVVVWVDQQALNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEG 238 Query: 401 --RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + GD +TI + FL+NQ + + + F + Sbjct: 239 TFQNGD-VTIMPIQFLDNQTPVEKDAGKTPEPASKAWIWWLAGG---------LLFAIIA 288 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A + I +K ++ A +MP D+ + L++R Sbjct: 289 AGIIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVMPEDHPDFNFQTDAFHLSEPELKAR 348 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +L M + + R A +++KW E Sbjct: 349 -----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380 >gi|313639030|gb|EFS04021.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171] Length = 380 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 134/397 (33%), Gaps = 32/397 (8%) Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGK 229 ++ + + I+ V+AAVPN+ DV ++D+ +++ + + Sbjct: 1 TLKTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKN 60 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + I AI ++ +I L++ +DNFR +N D + P+ RS + Sbjct: 61 EVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQ 119 Query: 290 LSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S+ S + N + + ++K E +NYE+++ Sbjct: 120 KDTSTDTSKGSTNTTESGTASNADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIK 179 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-------- 400 L + ++ V V++ L A+ K A + ++ G Sbjct: 180 KHP-ALAKTNVVVWVDQQALNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEG 238 Query: 401 --RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + GD +TI + FL+NQ + + + F + Sbjct: 239 TFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGG---------LLFAIIA 288 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A + I +K ++ A ++P D+ + L++R Sbjct: 289 AGIIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVVPEDHPDFNFQTDAFHLSEPELKAR 348 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +L M + + R A +++KW E Sbjct: 349 -----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380 >gi|313634347|gb|EFS00945.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067] Length = 380 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 134/397 (33%), Gaps = 32/397 (8%) Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGK 229 ++ + + I+ V+AAVPN+ DV ++D+ +++ + + Sbjct: 1 TLKTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKN 60 Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289 + I AI ++ +I L++ +DNFR +N D + P+ RS + Sbjct: 61 EVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQ 119 Query: 290 LSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348 S+ S + N + + ++K E +NYE+++ Sbjct: 120 KDTSTDTSKGSTNTTESGTAANADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIK 179 Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-------- 400 L + ++ V V++ L A+ K A + ++ G Sbjct: 180 KHP-ALAKTNVVVWVDQQSLNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEG 238 Query: 401 --RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + GD +TI + FL+NQ + + + F + Sbjct: 239 TFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGG---------LLFAIIA 288 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 A + I +K ++ A ++P D+ + L++R Sbjct: 289 AGIIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVVPEDHPDFNFQTDAFHLSEPELKAR 348 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + +L M + + R A +++KW E Sbjct: 349 -----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380 >gi|82795289|gb|ABB91658.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tagetis] Length = 268 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 10/188 (5%) Query: 22 ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDN 79 + A ++L+ I++ +L+ L D N + L++ +ID R + Sbjct: 2 KFLSAGLLLMCILMLGGCS------DDTDLFTGLSEQDSNEVVARLADQHIDARKRLEKT 55 Query: 80 GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 G ++V +S + +A L A GLP S S E+F K T + + AL E+ Sbjct: 56 GVVVTVATSDMNRAVRVLDAAGLPRHSRTSLGEIFKKEGVI-STPLEERARYIYALSQEL 114 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAA 198 T+ I G++ ARVH+V+P+ + + +A+V I+ S I+ +VA++ Sbjct: 115 EATLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSASLDPDSVRGRIQQMVASS 174 Query: 199 VPNLDMGD 206 +P + Sbjct: 175 IPGMSTQS 182 >gi|291484172|dbj|BAI85247.1| hypothetical protein BSNT_02643 [Bacillus subtilis subsp. natto BEST195] Length = 196 Score = 137 bits (344), Expect = 6e-30, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 M + ++ +F+K+ + L + +++ S + I++ + F ++ LY L + Sbjct: 1 MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 +I L + +S+ G+ ISVP V ++ +AA+GLP + S Y F + F Sbjct: 58 GQIKKELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158 GLT ++ +V+A + E++ I + GI ++V I + Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMITL 154 >gi|307944360|ref|ZP_07659701.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] gi|307772706|gb|EFO31926.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] Length = 259 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Query: 28 VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSISV 85 V + A F+ + LY L + N+I+ L +A I +G SI V Sbjct: 4 ASAVLRSAILLACLFILAGCKVELYSNLSEQEANQIAATLIDAGISVDKEKLRDGVSILV 63 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 S A L GLP+ + E+F K + + ++ V AL E+ TI Sbjct: 64 ADSEFANAVNLLNENGLPARRYQNMGEIFQK-SGIVSSPTEEKARFVFALSQELENTIAE 122 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 I G+++ARVH+V+P+ + +AS+ +R + + I+ LV+ ++ L Sbjct: 123 IDGVLSARVHVVLPEEDILGRQTEPSSASLFVRHVEGVPVEKLIPRIKMLVSNSIEGLVY 182 Query: 205 GDVTVL 210 V+V+ Sbjct: 183 ERVSVV 188 >gi|289678028|ref|ZP_06498918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae FF5] gi|330895842|gb|EGH28130.1| type III secretion protein HrcJ [Pseudomonas syringae pv. japonica str. M301072PT] Length = 268 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91 +L + +L+ L D N + L++ +ID R + G ++V +S + Sbjct: 8 LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S S ++F K T + + AL E+ T+ I G++ Sbjct: 68 RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182 >gi|330975852|gb|EGH75918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 268 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91 +L + +L+ L D N + L++ +ID R + G ++V +S + Sbjct: 8 LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S S ++F K T + + AL E+ T+ I G++ Sbjct: 68 RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182 >gi|330969118|gb|EGH69184.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aceris str. M302273PT] Length = 268 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 4/175 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91 +L + +L+ L D N + L++ +ID R + G ++V +S + Sbjct: 8 LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S S ++F K T + + AL E+ T+ I G++ Sbjct: 68 RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|329889303|ref|ZP_08267646.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568] gi|328844604|gb|EGF94168.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568] Length = 240 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 4/168 (2%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLP 103 LY L D N + L +D + +G + +A L +G P Sbjct: 19 CGQQELYGGLTERDANEMVAVLKAQGLDASKTRDGDNWVLKADRGDFSRAVALLHDRGYP 78 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + S E+F K F + Q + + AL+ E+ +TI SI G+V ARVHI +P+ Sbjct: 79 RQNFASMGEVFQKE-GFVSSPMEQRMRMMYALQQELGQTISSIDGVVQARVHIAVPESDP 137 Query: 164 FRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ +I+ LV ++ L VTV+ Sbjct: 138 LAQEKPPSSASVFIKHRPDYDISAQTGSIKALVVNSIEGLPYDKVTVV 185 >gi|66044446|ref|YP_234287.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae B728a] gi|63255153|gb|AAY36249.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae B728a] Length = 268 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91 +L + +L+ L D N + L++ +ID R + G ++V +S + Sbjct: 8 LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S S ++F K T + + AL E+ T+ I G++ Sbjct: 68 RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182 >gi|330950834|gb|EGH51094.1| type III secretion protein HrcJ [Pseudomonas syringae Cit 7] Length = 268 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 4/175 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91 +L + +L+ L D N + L++ +ID R + G ++V +S + Sbjct: 8 LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S S ++F K T + + AL E+ T+ I G++ Sbjct: 68 RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|818896|gb|AAB05080.1| HrcJ [Pseudomonas syringae pv. syringae] Length = 268 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 4/175 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91 +L + +L+ L D N + L++ +ID R + G ++V +S + Sbjct: 8 LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S S ++F K T + + AL E+ T+ I G++ Sbjct: 68 RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|330937050|gb|EGH41134.1| type III secretion protein HrcJ [Pseudomonas syringae pv. pisi str. 1704B] Length = 229 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91 +L + +L+ L D N + L++ +ID R + G ++V +S + Sbjct: 8 LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP S S ++F K T + + AL E+ T+ I G++ Sbjct: 68 RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 ARVH+V+P+ + + +A+V I+ S I+ +VA+++P + Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182 >gi|227820519|ref|YP_002824490.1| type III secretion component, RhcJ protein [Sinorhizobium fredii NGR234] gi|227339518|gb|ACP23737.1| type III secretion component, RhcJ protein [Sinorhizobium fredii NGR234] Length = 267 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 5/181 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMV 90 L++A +LY L+ + N + L I + +G +++V + Sbjct: 13 GLWLALIVVTLQACSVDLYTNLDEREANEMVATLLSKGIAAGRVVQKDGKLTVTVDENEF 72 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A L GLP + +F + + + + AL E++RT+ I G++ Sbjct: 73 SEAVTALNMAGLPKQKFATLGSVF-QQEGLVASPVQERAQMIYALSEELSRTVSEIDGVL 131 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +ARVH+V+PD ++ +ASV IR I+ LVA ++ L V+V Sbjct: 132 SARVHVVLPDNDPLQRNAIPASASVFIRHEAGLDVNPLIPRIKTLVANSISGLTYEKVSV 191 Query: 210 L 210 + Sbjct: 192 V 192 >gi|330975997|gb|EGH76063.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 153 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 60/129 (46%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ANI++ + N ++ V S V +ARI LA G + +N G+E+ DK G + FM+ Sbjct: 85 AANINYTVEPNSGALLVKSDDVQRARIQLAQAGGVQNDANIGFEILDKDQGLGTSQFMEA 144 Query: 129 ITRVRALEG 137 R LEG Sbjct: 145 TRYRRGLEG 153 >gi|254253717|ref|ZP_04947034.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa AUO158] gi|124898362|gb|EAY70205.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa AUO158] Length = 263 Score = 134 bits (337), Expect = 4e-29, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSS 88 ++ A + + + LY +L SD N + AL + +D + S +G S+ V Sbjct: 16 LVAVAALVLSLAACKQE-LYGQLTESDCNEMVAALLMSGVDAQKSTPDGGKTWSVGVDEK 74 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + A L A+GLP + LF K + T + + + L E+ T+ I G Sbjct: 75 QIVHAVEVLRARGLPRKKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKIDG 133 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDV 207 +V ARV IV+P+ + +ASV I+ + + AI++LV ++ L V Sbjct: 134 VVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQV 193 Query: 208 TVL 210 +V Sbjct: 194 SVT 196 >gi|312602780|ref|YP_004022625.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] gi|306431583|emb|CBK52135.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] gi|312170094|emb|CBW77106.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia rhizoxinica HKI 454] Length = 265 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 9/196 (4%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-- 77 + I+ + + + L + + LY L DVN + VAL E +D S Sbjct: 4 GQRTIVIRISRIVLALLVCLSLWGCHKE---LYNNLSEQDVNEMMVALLERGVDASKSTP 60 Query: 78 --DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 S+SV + + +A L A+GLP + + LF K + T + + + L Sbjct: 61 DNGKTWSLSVEEAEIVRAMEVLRARGLPHAKYDDLGSLF-KRDGLVSTPTEERVRFIYGL 119 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHL 194 E++ T+ I G+V ARV IV+P+ +ASV I+ S + I+ L Sbjct: 120 SQELSNTLSKIDGVVVARVQIVLPNNDPLALQAKPSSASVFIKYRPDSDVAALVPQIKTL 179 Query: 195 VAAAVPNLDMGDVTVL 210 V +V L V+V Sbjct: 180 VVHSVEGLTYEAVSVT 195 >gi|171316789|ref|ZP_02906000.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] gi|171098047|gb|EDT42863.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] Length = 241 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS----SISVPSSMVGKARIHLAAQGLPS 104 +LY L D N + AL E ID G+ +SVP A L +GLP Sbjct: 15 TSLYENLTEQDANEMIAALFENGIDASKQRGGNGKFWMVSVPEGEFAGAINVLRDRGLPQ 74 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + LF K + F T + + + L E++ TI +I G++ ARV IV+P+ Sbjct: 75 EKRDDLGNLF-KKDGFVSTPTEERVRFLYGLSQELSSTISAIDGVMVARVQIVLPNNDPL 133 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ S I+ LV +V L V+V Sbjct: 134 AEQVKPSSASVFIKYNADSSVGQIVPQIKTLVVNSVEGLAYERVSVT 180 >gi|325109012|ref|YP_004270080.1| secretory protein YscJ/FliF family protein [Planctomyces brasiliensis DSM 5305] gi|324969280|gb|ADY60058.1| secretory protein YscJ/FliF family protein [Planctomyces brasiliensis DSM 5305] Length = 540 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 86/572 (15%), Positives = 173/572 (30%), Gaps = 54/572 (9%) Query: 1 MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-PHYDNLYVKLE-- 56 M I Q QF + ++ ++ +LA+V ++ + F + Y + V Sbjct: 1 MDIFKQTFTQFRELFLAMPASQRAMLATVTVLLLGGFGYLMYRGTGNGGYVPVSVGKSFR 60 Query: 57 VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFD 115 V ++ R L + G + VPSS V + L A G LP + + + + Sbjct: 61 VEELIRAEETLLQNGYT-DFERRGQRLLVPSSKVEEYNAALLAAGSLPQNWAEEWEKQYS 119 Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 + F M + + A ++ + ++ I A V + + K Sbjct: 120 DIGPFANNKQM-DERKEIARAKLASQMLLALPDIEYANVVWDQEEKARWPKQPRSTATVS 178 Query: 176 MI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNILGKSLSI 233 + RA A+R +A NL DVTVLD G + + L Sbjct: 179 VQPRANKQLDETLVHAVRVSIAGMKANLSAEDVTVLDLGRGIAYQQADDNDPFNDRLLQR 238 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293 +Q ++ + A+ D+ R AV +++ IR + Sbjct: 239 IQQLKDMYRDEVLTAIDYI---DSVRVAVKVDIDKVKSAIRRSQSVETTGTTLVSINESS 295 Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 S Q N P + +S ++T+ KE + + Sbjct: 296 KHNSNRFQTAKEPGQNANGPMNLAGQQTPTQSADSTETKESSLT-APSFQVTQEDVAGAL 354 Query: 354 LERLSIAVVVNKGRLTEVLGRS------ADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407 E +S++VV+ + V +S A + I + + ++ V A + I Sbjct: 355 PENVSVSVVIPEQYYRTVALQSGQVAPDATEEDIRAAVQKVRPDVDDAVKARVAKIIPIP 414 Query: 408 I-------TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 + + + V + + LS +A+ + L ++ + Sbjct: 415 VGQNVDDYIDVGAFIPSPTSETIVSIPWTQTLSYWITQWGSAVGLGIFALWAFWMLNKTV 474 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R + + + + Sbjct: 475 R----------------------------SQTETEIPEPEPEQVEEAKSEEEEFSDEDLM 506 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + L ++++ N E A I+ W + Sbjct: 507 PQGDTKRVDHLQYLVKKNPEMTASIISNWIQE 538 >gi|115360597|ref|YP_777734.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria AMMD] gi|115285925|gb|ABI91400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria AMMD] Length = 263 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 9/185 (4%) Query: 31 VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVP 86 + + LY +L SD N + AL + +D + S +G S+SV Sbjct: 16 LVAAAVLVLSLAACKQD---LYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVD 72 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 + A L A+G+P + LF K + T + + + L E+ T+ I Sbjct: 73 EKQIVHAVEVLRARGIPRKKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKI 131 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205 G+V ARV IV+P+ + +ASV I+ + + AI++LV ++ L Sbjct: 132 DGVVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYD 191 Query: 206 DVTVL 210 V+V Sbjct: 192 QVSVT 196 >gi|325926453|ref|ZP_08187774.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Xanthomonas perforans 91-118] gi|325543152|gb|EGD14594.1| flagellar biosynthesis/type III secretory pathway lipoprotein [Xanthomonas perforans 91-118] Length = 241 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 8/229 (3%) Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385 K NYE++ T +++R+S+AV+++ G+ +Q + L Sbjct: 19 TPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAEL 78 Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 I +V A G ++ RGDT+++ + F+ + + + + LV Sbjct: 79 TRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVG 134 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505 V L + F + R A K + G P ++ D+ + Sbjct: 135 AVVVLALLFGVVRPTLRQLTGVTAVKDKQGKAGKDGTPQS---ADVRMVDEDDDLMPRLE 191 Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553 +D ++ ++ I + + +RL ++ + +R A++++ W SE Sbjct: 192 EDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSKRVAQVVKGWVASE 240 >gi|28868592|ref|NP_791211.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato str. DC3000] gi|213968275|ref|ZP_03396419.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato T1] gi|301383410|ref|ZP_07231828.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato Max13] gi|302061714|ref|ZP_07253255.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato K40] gi|302129971|ref|ZP_07255961.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato NCPPB 1108] gi|790910|gb|AAB00129.1| HrpC [Pseudomonas syringae pv. tomato] gi|28851830|gb|AAO54906.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato str. DC3000] gi|213926913|gb|EEB60464.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato T1] gi|331015115|gb|EGH95171.1| type III secretion protein HrcJ [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 268 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSRT 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 TLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + V Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183 >gi|330872935|gb|EGH07084.1| type III secretion protein HrcJ [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963064|gb|EGH63324.1| type III secretion protein HrcJ [Pseudomonas syringae pv. actinidiae str. M302091] Length = 268 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSRT 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 TLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +A+V I+ S I+ +VA+++P + V Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183 >gi|330984953|gb|EGH83056.1| type III secretion protein HrcJ [Pseudomonas syringae pv. lachrymans str. M301315] Length = 269 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSRT 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182 >gi|330819406|ref|YP_004348268.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia gladioli BSR3] gi|327371401|gb|AEA62756.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia gladioli BSR3] Length = 277 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN 79 R + + +L LY L DVN + VAL E +D + + + Sbjct: 9 RRASVVGAFALCALLAGC---------KKELYGNLSEQDVNEMVVALLENGVDAAKETPD 59 Query: 80 GS---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 G ++ V + +A L ++GLP S ++ +LF K + T + + + + Sbjct: 60 GGKTWTLEVDGDQMVRAMEALRSRGLPKSRFDNLGDLF-KKDGLVSTPTEERVRFIYGMS 118 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195 E++ T+ I G++ ARV IV+P+ + +A+V I+ S + I+ LV Sbjct: 119 QELSSTLSKIDGVLVARVQIVLPNNDPLAQTIKPSSAAVFIKYRPNSDVGALVPQIKTLV 178 Query: 196 AAAVPNLDMGDVTVL 210 +V L V+V Sbjct: 179 MHSVEGLTYDQVSVT 193 >gi|330957475|gb|EGH57735.1| type III secretion protein HrcJ [Pseudomonas syringae pv. maculicola str. ES4326] Length = 269 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSRT 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182 >gi|330894451|gb|EGH27112.1| type III secretion protein HrcJ [Pseudomonas syringae pv. mori str. 301020] Length = 269 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSRT 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182 >gi|172064921|ref|YP_001815633.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria MC40-6] gi|171997163|gb|ACB68080.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MC40-6] Length = 264 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSS 88 ++ + + + LY +L SD N + AL + +D + S +G S+SV Sbjct: 16 LVATAVLVLSLAACKQE-LYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEK 74 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + A L A+G+P + LF K + T + + + L E+ T+ I G Sbjct: 75 QIVHAVEVLRARGIPRKKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKIDG 133 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDV 207 +V ARV IV+P+ + +ASV I+ + + AI++LV ++ L V Sbjct: 134 VVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQV 193 Query: 208 TVL 210 +V Sbjct: 194 SVT 196 >gi|289623695|ref|ZP_06456649.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647631|ref|ZP_06478974.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. 2250] gi|330871299|gb|EGH06008.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 268 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|42562013|gb|AAS20455.1| HrcJ [Pseudomonas syringae pv. phaseolicola] Length = 268 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|9800448|gb|AAF99294.1|AF268940_4 HrcJ [Pseudomonas syringae pv. phaseolicola] Length = 268 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|71734078|ref|YP_273534.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. phaseolicola 1448A] gi|37528863|gb|AAQ92361.1| HrcJ [Pseudomonas syringae] gi|71554631|gb|AAZ33842.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322966|gb|EFW79056.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. B076] gi|320329911|gb|EFW85899.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. race 4] gi|330874585|gb|EGH08734.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. glycinea str. race 4] Length = 268 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|257487247|ref|ZP_05641288.1| type III secretion component protein HrcJ [Pseudomonas syringae pv. tabaci ATCC 11528] gi|50508099|dbj|BAD30075.1| HrcJ [Pseudomonas syringae pv. tabaci] gi|238577776|gb|ACR46687.1| HrcJ [Pseudomonas syringae pv. tabaci] Length = 268 Score = 131 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|289670545|ref|ZP_06491620.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 8/235 (3%) Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379 + K NYE++ T +++R+S+AV+++ G+ +Q Sbjct: 2 QATAAAAPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQP 61 Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439 + L I +V A G ++ RGDT+++ + F+ + + + Sbjct: 62 LTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQN----G 117 Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 + LV V L + F + R A K + P ++ +++ Sbjct: 118 LRLLVGAVVVLALLFGVVRPTLRQLTGVTAIKEKQRKGGNDGTPQS---ADVRMVDDEDS 174 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553 L +D S ++ + I + + +R+ ++ + +R A++++ W SE Sbjct: 175 LLPHMGEDTASIGQDRKPAIALPDAYEERMRVAREAVKADSKRVAQVVKGWVASE 229 >gi|298485938|ref|ZP_07004013.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159524|gb|EFI00570.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 268 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|254469855|ref|ZP_05083260.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudovibrio sp. JE062] gi|211961690|gb|EEA96885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudovibrio sp. JE062] Length = 267 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSM 89 + + + + + +LY L + N + L E + + + D ++ V Sbjct: 6 FITIVGMVIGLAACN-TDLYTNLSEQEANTMLSLLLENGVSAQKVGLGDGLVTLQVDDDD 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L A GLP + ++ ++F K + + F + I + AL E++ TI I GI Sbjct: 65 IQRAVTILNANGLPKRARDTLGQVFQK-SGIISSPFEERIRFIYALSEEVSETITEIDGI 123 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVT 208 V+ARVHIV+P+ + +A++ I+ + I+ LV+ A+ ++ V+ Sbjct: 124 VSARVHIVLPEKADLGEEVKPSSAAIFIKHRPEFDIEFLIPQIKRLVSNAIEGVEYASVS 183 Query: 209 V 209 V Sbjct: 184 V 184 >gi|3603315|gb|AAC35801.1| putative hrp type III secretion pathway protein [Pseudomonas syringae pv. glycinea] Length = 268 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S ++F K T + + AL E+ T I G++ ARVH+V+P+ + + Sbjct: 85 SLGDIFKKEGVI-STPLEERARYIYALSQELEATWSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|238023713|ref|YP_002907945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia glumae BGR1] gi|237878378|gb|ACR30710.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Burkholderia glumae BGR1] Length = 280 Score = 130 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 15/201 (7%) Query: 15 TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 S R +A + +L LY L DVN + VAL E +D Sbjct: 3 QSRSGWRRASVAGGFALCALLAGC---------KKELYGNLSEQDVNEMVVALLENGVDA 53 Query: 75 RIS----DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 ++ V + +A L ++GLP S ++ +LF K + T + + Sbjct: 54 SKETPDAGKTWTLEVDGDQMVRAMEALRSRGLPKSRFDNLGDLF-KKDGLVSTPTEERVR 112 Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AE 189 + + E++ T+ I G++ ARV IV+P+ + +A+V I+ S + Sbjct: 113 FIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQTIKPSSAAVFIKYRPNSDVGALVP 172 Query: 190 AIRHLVAAAVPNLDMGDVTVL 210 I+ LV +V L V+V Sbjct: 173 QIKTLVMHSVEGLTYDQVSVT 193 >gi|51103010|gb|AAT96157.1| HrcJ [Pseudomonas viridiflava] gi|51103065|gb|AAT96211.1| HrcJ [Pseudomonas viridiflava] Length = 268 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 4/158 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ + D N + L++ +ID R + G ++V + + +A L A GLP S Sbjct: 25 LFTGMSEQDSNEVIARLADQHIDARKRLEKGGVVVTVATQDMNRAVRVLDAAGLPRQSRT 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSTALDPDSVRGRIQQMVASSIPGMSTQ 181 >gi|170701293|ref|ZP_02892259.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] gi|170133816|gb|EDT02178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] Length = 244 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY +L SD N + AL + +D + S +G S+SV + A L A+G+P Sbjct: 11 QELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEKQIVHAVEVLRARGIPR 70 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + LF K + T + + + L E+ T+ I G+V ARV IV+P+ Sbjct: 71 KKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNNDPL 129 Query: 165 RKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ + + AI++LV ++ L V+V Sbjct: 130 AQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSVT 176 >gi|171915741|ref|ZP_02931211.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Verrucomicrobium spinosum DSM 4136] Length = 248 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89 I L + V+ L+ L + N + AL E ++ + + ++ V S Sbjct: 7 ITLCLCGLLLVSCAKQVPLFSDLREEEANEVMAALMERDVACTKTPGKEDKWALQVKSED 66 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L A GLP S E+F K + + + + + AL E++ T I G+ Sbjct: 67 FPFAMQTLQAMGLPRQSFQRMGEIFQK-SGLVSSPTEERVRFIYALSQELSETFMKIDGV 125 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVT 208 VAARVHI +PD + +A+V I+ + + +++LV +V L +V Sbjct: 126 VAARVHIALPDTDPLAEETNPASAAVFIKCRPGYNLANNTQDLKNLVTRSVEGLKPENVE 185 Query: 209 VL 210 ++ Sbjct: 186 LV 187 >gi|332526232|ref|ZP_08402363.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Rubrivivax benzoatilyticus JA2] gi|332110068|gb|EGJ10696.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Rubrivivax benzoatilyticus JA2] Length = 239 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY +L+ + N + L+ A ID R+ ++ V +A L A G P Sbjct: 35 LYAQLDEREANEMVALLTHAGIDAAKQRVDGGQFALRVGGGEFARAVQVLHAAGYPREGH 94 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S +F K F T + + AL E+A T+Q+I G+V ARVH+ +P+ F + Sbjct: 95 ESLGTMF-KKEGFVTTQLEERARFMHALSQELAGTLQNIDGVVLARVHLAVPEKRRFAEK 153 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 A+V ++ +I+ LV A+ L VTV+ Sbjct: 154 PEPSAAAVFLKVRPGVDLAPQIGSIKALVVNAIEGLPYEQVTVV 197 >gi|237799989|ref|ZP_04588450.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022844|gb|EGI02901.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae str. 1_6] Length = 269 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L++ +ID R + G ++V +S + +A L A GLP S Sbjct: 25 LFTGLSEQDSNEVVARLADQHIDARKRMEKTGVVVTVATSDMNRAVRVLDAAGLPRHSRT 84 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 85 SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGEPI 143 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 +A+V I+ S I+ +VA+++P + Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182 >gi|167615471|ref|ZP_02384106.1| lipoprotein transmembrane protein [Burkholderia thailandensis Bt4] Length = 252 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 39 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 99 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204 >gi|312597814|gb|ADQ89929.1| RscJ [Pseudomonas fluorescens] Length = 293 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 9/172 (5%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ L D N + L+ N++ ++ +G ++ V + + A L A GLP Sbjct: 18 ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 77 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S +S E+F K T + + AL E+ T+ I G+V ARVH+V+P+ + Sbjct: 78 RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 136 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DMGDVTVL 210 + +ASV I+ N S +R+LVA+ +P + + ++V+ Sbjct: 137 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGMADATQNPTKLSVV 188 >gi|167577322|ref|ZP_02370196.1| lipoprotein transmembrane protein [Burkholderia thailandensis TXDOH] Length = 260 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 39 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 99 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204 >gi|229588272|ref|YP_002870391.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] gi|229360138|emb|CAY46995.1| putative type III secretion protein [Pseudomonas fluorescens SBW25] Length = 271 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 9/172 (5%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ +L + N + L++ +I R + +G ++SV ++ +G+A L A GLP Sbjct: 29 DRVELHRQLSEQEANEVIAELADKHIRARKIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + + F K T + + AL E+ T+ +I G++ ARVH+V+P+ + Sbjct: 89 LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147 Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD-----MGDVTVL 210 + +ASV I+ + A +R +VA+++P + +TV+ Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGMTTAVDNPQKLTVI 199 >gi|167566308|ref|ZP_02359224.1| lipoprotein transmembrane protein [Burkholderia oklahomensis EO147] Length = 258 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 6/186 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 37 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ F Sbjct: 97 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPF 155 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 ++ +ASV I+ + + I++LV +V L +V+V + Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVTSVAADPIDLVSAG 215 Query: 224 RNILGK 229 + K Sbjct: 216 QPPARK 221 >gi|330812416|ref|YP_004356878.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380524|gb|AEA71874.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 295 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 9/172 (5%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ L D N + L+ N++ ++ +G ++ V + + A L A GLP Sbjct: 20 ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 S +S E+F K T + + AL E+ T+ I G+V ARVH+V+P+ + Sbjct: 80 RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 138 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DMGDVTVL 210 + +ASV I+ N S +R+LVA+ +P + + ++V+ Sbjct: 139 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGMADATQNPTKLSVV 190 >gi|171319020|ref|ZP_02908147.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] gi|171095775|gb|EDT40728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MEX-5] Length = 264 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 5/181 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89 ++ + A + + L+ ++ D N + L A + +G +SV S+ Sbjct: 1 MLSAVLAVISLTACGNAALFDQINERDANEMLSVLGRAGVAAEKDQRSADGWRLSVASAD 60 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 V A L++ GLP S ELF K T + + V A+ E++RTI +I G+ Sbjct: 61 VSVALEILSSAGLPRERYKSIGELFPKE-GLISTPVEEHMRSVYAISQELSRTISNIDGV 119 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVT 208 + ARVH+ +P ++ PTASV+++ + + AI+ LV A+ +LD +VT Sbjct: 120 ITARVHLNIPRREPLLRVQQTPTASVLVKYRAEVSMQPNTLAIKDLVVGAIKDLDRANVT 179 Query: 209 V 209 V Sbjct: 180 V 180 >gi|85706154|ref|ZP_01037249.1| flagellar M-ring protein FliF [Roseovarius sp. 217] gi|85669318|gb|EAQ24184.1| flagellar M-ring protein FliF [Roseovarius sp. 217] Length = 268 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 4/266 (1%) Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349 + + + ++ S VTV N+P S + E+ NYE+++ T Sbjct: 5 TDTEERANTSNDQSSDVTVASNLPD--GDVAANGASASENTETRERINYEVSSTEREITQ 62 Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409 ++R+S+A+++N + G + + + L + +V AA GI+ RGD +TI Sbjct: 63 QPGAIKRMSVAILINGLTTLDASGTPSFALRPEEELTALRDLVVAAVGIDEARGDVVTIR 122 Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 ++ F E + V+ S +D L+ T++ +LV + L++ L + + + Sbjct: 123 TLQF-EPIEPSGTLVEASLLDRLAIDVMTLVQSLVLAIVALILGLFVLRPILSRPPLMAS 181 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + S V +++ D S + + SR SRI+ + + Sbjct: 182 SQIGRLAVASQPEIMPLSGVIDDGEIDESGLSDVSEKALIDRSRQPLSRIDGPP-EDPVV 240 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 RL +I +E +ILR W E E Sbjct: 241 RLRSLIGQRQEETVEILRNWLEGEEE 266 >gi|83716240|ref|YP_438944.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] gi|83650065|gb|ABC34129.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] Length = 285 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 37 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 97 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 156 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 202 >gi|76819642|ref|YP_335842.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] gi|76584115|gb|ABA53589.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] Length = 282 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 34 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 93 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 94 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 152 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 153 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 199 >gi|167743335|ref|ZP_02416109.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 14] Length = 230 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|330940716|gb|EGH43724.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 251 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 37/248 (14%), Positives = 82/248 (33%), Gaps = 16/248 (6%) Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367 P + + N+E++ T +L RLS+AVVV+ Sbjct: 19 ANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMV 78 Query: 368 LTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 T G + + LA ++V A G ++ RGD++++ ++ F + Sbjct: 79 KTNAANGEVSRAPWSAADLARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF 138 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 F ++ V ++ L++ F L + K+ G Sbjct: 139 ----YSQPWFWDIVKQAVGVIFILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGG 191 Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 G + ND ++L + + + ++ + R A+++ Sbjct: 192 MGGLDGELSNDRVSLGGPQSILLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVV 243 Query: 547 RKWARSEI 554 ++W ++ Sbjct: 244 KEWINTDE 251 >gi|167924750|ref|ZP_02511841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei BCC215] Length = 243 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167907276|ref|ZP_02494481.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei NCTC 13177] Length = 244 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167850348|ref|ZP_02475856.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei B7210] Length = 242 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167840290|ref|ZP_02466974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia thailandensis MSMB43] Length = 253 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 35 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 94 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 95 ARYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 153 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 154 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 200 >gi|167573409|ref|ZP_02366283.1| lipoprotein transmembrane protein [Burkholderia oklahomensis C6786] Length = 262 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 6/186 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 37 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 97 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 ++ +ASV I+ + + I++LV +V L +V+V + Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVTSVAADPIDLVSAG 215 Query: 224 RNILGK 229 + K Sbjct: 216 QPPARK 221 >gi|323530318|ref|YP_004232470.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1001] gi|323387320|gb|ADX59410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1001] Length = 282 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + VAL E +D S ++ V + +A L +GLP + Sbjct: 41 LYRNLTEQDANEMVVALLEQGVDASKSTVDNGKTWTLEVDDKQLVRAMQVLRERGLPHNR 100 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + LF K + T + + + L E++ T+ I G++ ARV IV+P+ + Sbjct: 101 YDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPLAQ 159 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ S + I+ LV +V L V+V Sbjct: 160 QMKPSSASVFIKYRPDSDASALVPQIKTLVMHSVEGLTYDAVSVT 204 >gi|217425426|ref|ZP_03456920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|217391677|gb|EEC31705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] Length = 274 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 11 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 70 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188 Query: 204 MGDVTVL 210 V+V Sbjct: 189 YDQVSVT 195 >gi|167915637|ref|ZP_02502728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 112] Length = 239 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|257142047|ref|ZP_05590309.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264] Length = 287 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 39 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 99 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204 >gi|167584002|ref|ZP_02376390.1| lipoprotein transmembrane protein [Burkholderia ubonensis Bu] Length = 227 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 22 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 82 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 140 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 141 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 187 >gi|126442814|ref|YP_001063279.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126222305|gb|ABN85810.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] Length = 284 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|53722647|ref|YP_111632.1| type III secretion protein [Burkholderia pseudomallei K96243] gi|126457668|ref|YP_001076235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|217422397|ref|ZP_03453900.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|242312420|ref|ZP_04811437.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254264523|ref|ZP_04955388.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|52213061|emb|CAH39099.1| putative type III secretion protein [Burkholderia pseudomallei K96243] gi|126231436|gb|ABN94849.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|217394628|gb|EEC34647.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|242135659|gb|EES22062.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254215525|gb|EET04910.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 284 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|237509505|ref|ZP_04522220.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] gi|235001710|gb|EEP51134.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] Length = 277 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|167724370|ref|ZP_02407606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] Length = 236 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|226198447|ref|ZP_03794015.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|254186953|ref|ZP_04893469.1| lipoprotein transmembrane protein [Burkholderia pseudomallei Pasteur 52237] gi|157934637|gb|EDO90307.1| lipoprotein transmembrane protein [Burkholderia pseudomallei Pasteur 52237] gi|225929504|gb|EEH25523.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] Length = 270 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|260775676|ref|ZP_05884572.1| type III secretion bridge between inner and outermembrane lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio coralliilyticus ATCC BAA-450] gi|260608092|gb|EEX34261.1| type III secretion bridge between inner and outermembrane lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio coralliilyticus ATCC BAA-450] Length = 268 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 6/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMV 90 + + + L L D N + ALS+ NI + NG +I V S+ + Sbjct: 13 VFMGILLVLLTGCSEQVELNSGLLERDANAVLSALSDKNISAEKRMDKNGVTILVNSNQM 72 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 GKA L+ GLP + +S +F T ++ + AL E+ T+ I G+V Sbjct: 73 GKALRVLSIAGLPKAPHDSLGSMFPNDGVI-STPLEEQARYIHALSQELEYTLSEIDGVV 131 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL--DMGDV 207 ARVH+V+P+ + + + +ASV I+ + I+ LVA ++P L + + Sbjct: 132 LARVHVVLPEKIAPGEPISPASASVFIKHQTTLDPDVIKNRIQRLVAGSIPGLIDNKNKL 191 Query: 208 TVL 210 +V+ Sbjct: 192 SVV 194 >gi|14719872|gb|AAK73236.1| SctJ [Burkholderia pseudomallei] gi|48479054|gb|AAT44850.1| lipoprotein transmembrane protein [Burkholderia pseudomallei] Length = 274 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 11 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 70 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188 Query: 204 MGDVTVL 210 V+V Sbjct: 189 YDQVSVT 195 >gi|134282063|ref|ZP_01768769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246592|gb|EBA46680.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 284 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSSISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDDGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|53722424|ref|YP_111409.1| type III secretion associated protein [Burkholderia pseudomallei K96243] gi|52212838|emb|CAH38872.1| putative type III secretion associated protein [Burkholderia pseudomallei K96243] Length = 274 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 11 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 70 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188 Query: 204 MGDVTVL 210 V+V Sbjct: 189 YDQVSVT 195 >gi|167820515|ref|ZP_02452195.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 91] gi|167828888|ref|ZP_02460359.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 9] Length = 235 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|307725653|ref|YP_003908866.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1003] gi|307586178|gb|ADN59575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. CCGE1003] Length = 276 Score = 127 bits (319), Expect = 5e-27, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + VAL E +D S ++ V + +A L +GLP S Sbjct: 35 LYRNLTEQDANEMVVALLEQGVDASKSTVDNGKSWTLEVDDKQLVRAMQVLRERGLPHSR 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + LF K + T + + + L E++ T+ I G++ ARV IV+P+ + Sbjct: 95 YDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPLAQ 153 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ S + I+ LV +V L V+V Sbjct: 154 QMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 198 >gi|167906939|ref|ZP_02494144.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei NCTC 13177] Length = 269 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 6 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 65 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183 Query: 204 MGDVTVL 210 V+V Sbjct: 184 YDQVSVT 190 >gi|167742984|ref|ZP_02415758.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 14] Length = 274 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 11 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 70 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188 Query: 204 MGDVTVL 210 V+V Sbjct: 189 YDQVSVT 195 >gi|167898945|ref|ZP_02486346.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 7894] Length = 235 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|126442940|ref|YP_001062988.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126458134|ref|YP_001075935.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|167828530|ref|ZP_02460001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 9] gi|226199084|ref|ZP_03794646.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|242313688|ref|ZP_04812705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] gi|254183797|ref|ZP_04890389.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1655] gi|254193806|ref|ZP_04900238.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|254301608|ref|ZP_04969052.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|126222431|gb|ABN85936.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] gi|126231902|gb|ABN95315.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|157811474|gb|EDO88644.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|169650557|gb|EDS83250.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|184214330|gb|EDU11373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1655] gi|225928859|gb|EEH24884.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|242136927|gb|EES23330.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106b] Length = 269 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 6 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 65 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183 Query: 204 MGDVTVL 210 V+V Sbjct: 184 YDQVSVT 190 >gi|254186712|ref|ZP_04893228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254263992|ref|ZP_04954857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|157934396|gb|EDO90066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254214994|gb|EET04379.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 269 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 6 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 65 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183 Query: 204 MGDVTVL 210 V+V Sbjct: 184 YDQVSVT 190 >gi|119034700|gb|ABL59995.1| SctJ [Lysobacter enzymogenes] Length = 281 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 7/170 (4%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQG 101 LY +L+ N + AL +A I + G + V + A L ++G Sbjct: 40 CTRTPLYSQLDEQQANELMAALLDAGIPAEKDPSPSKTGWEVMVNRGDIPYAMQVLNSRG 99 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP + S E+F K F ++ ++ + L E++RT+ I G+V ARVHI +PD Sbjct: 100 LPRAQYRSLGEVF-KKEGFASSALEEKARYLYGLSQELSRTLTRIDGVVEARVHIALPDR 158 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-DMGDVTV 209 +ASV+I + E I+ V +V L D+ VTV Sbjct: 159 DPLGGNVQDSSASVLIFERPGQSLRDRETDIKVFVKDSVEGLDDVNKVTV 208 >gi|167898597|ref|ZP_02485998.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 7894] gi|237509740|ref|ZP_04522455.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] gi|235001945|gb|EEP51369.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei MSHR346] Length = 269 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 6 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 65 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183 Query: 204 MGDVTVL 210 V+V Sbjct: 184 YDQVSVT 190 >gi|237678823|emb|CAQ57550.1| RhcJ protein [Bradyrhizobium elkanii] Length = 291 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY K++ + N + L +D D S+I V + + L +GLP S Sbjct: 41 LYSKIQEREANEMLALLLGKGVDAARVVAKDGTSTIQVEERQLAYSIDLLNVEGLPRQSF 100 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+F K + + + V AL E++RTI I G+++ARVH+V+P R+ Sbjct: 101 KNLGEVF-KGSGLVASPIEERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQD 159 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR + + + I+ LVA ++ L V V+ Sbjct: 160 ATPSSASVFIRHGSNAKLSALLPQIKMLVANSIEGLSYDKVAVV 203 >gi|170690590|ref|ZP_02881757.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia graminis C4D1M] gi|170145025|gb|EDT13186.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia graminis C4D1M] Length = 282 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L D N + VAL E +D S ++ V + A L +GLP S Sbjct: 41 LYRNLTEQDANEMVVALLEQGVDASKSTIDNGKTWTLEVDDKQLVHAMQVLRERGLPHSR 100 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + LF K + T + + + L E++ T+ I G++ ARV IV+P+ + Sbjct: 101 YDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPLAQ 159 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ S + I+ LV +V L V+V Sbjct: 160 QMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 204 >gi|254193798|ref|ZP_04900230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|169650549|gb|EDS83242.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] Length = 284 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104 LY L D N + AL + +D + + +G +++V + KA L A+GLP+ Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + LF K + T + + + + E++ T+ I G+V ARVHIV+P+ Sbjct: 96 TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ++ +ASV I+ + + I++LV +V L +V+V Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201 >gi|294141012|ref|YP_003556990.1| type III secretion system apparatus lipoprotein [Shewanella violacea DSS12] gi|293327481|dbj|BAJ02212.1| type III secretion system apparatus lipoprotein [Shewanella violacea DSS12] Length = 243 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 79/204 (38%), Gaps = 6/204 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSIS--VPSSMVGKARIHLAAQGLPSSS 106 L+ L D N++ L +ID + D +I+ + A L G P Sbjct: 22 LFRDLSQDDANQMVALLMLHHIDAASELDDKSGTITLKIDKDQFINAVELLRQNGFPKPH 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 +S +LF + +E E ++ RT+ ++ G+++ARV I ++ R+ Sbjct: 82 YSSIEDLFPSGQ-LVTSPTQEEAKMNYLKEQQLERTLSTMDGVISARVTIAEMELDPNRR 140 Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +ASV I+ + +A+ I+ L+ +V L + +++V Sbjct: 141 EPTDKSASVFIKYSPQANLSNAKNNIKKLIQNSVTGLSVDNISVYLQESNYRYQPITPST 200 Query: 226 ILGKSLSIVQAIQHEIEMNINKAL 249 + ++ AI+ + L Sbjct: 201 SHTGNSGLLSAIETYKLPLVTGLL 224 >gi|167567951|ref|ZP_02360867.1| type III secretion associated protein [Burkholderia oklahomensis EO147] gi|167573175|ref|ZP_02366049.1| type III secretion associated protein [Burkholderia oklahomensis C6786] Length = 260 Score = 125 bits (314), Expect = 2e-26, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSS 88 ++ +A + + LY L DVN + VAL E +D +G ++ V S Sbjct: 1 MVCVLALSVQLTGCKKE-LYGGLSEQDVNEMLVALLENGVDASKETADGGKNWTLGVESD 59 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + A L A+GLP S + LF K + T + I + + E++ T+ I G Sbjct: 60 QLVHAMGVLRARGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 118 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 ++ ARV IV+P+ + +ASV I+ S + I+ LV +V L V Sbjct: 119 VLVARVQIVLPNNDPLAQAAKPSSASVFIKYRPSSDIGALIPQIKTLVMHSVEGLTYEQV 178 Query: 208 TVL 210 +V Sbjct: 179 SVT 181 >gi|167915298|ref|ZP_02502389.1| type III secretion associated protein [Burkholderia pseudomallei 112] Length = 262 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88 ++ +A + + LY L DVN + VAL E +D +G ++V Sbjct: 3 LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + A L +GLP S + LF K + T + I + + E++ T+ I G Sbjct: 62 QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 ++ ARV IV+P+ + +A+V I+ + + I+ LV +V L V Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180 Query: 208 TVL 210 +V Sbjct: 181 SVT 183 >gi|149926067|ref|ZP_01914330.1| putative type III secretion protein [Limnobacter sp. MED105] gi|149825355|gb|EDM84566.1| putative type III secretion protein [Limnobacter sp. MED105] Length = 265 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L + N I +L EA I S G ISVP M A L +QGLP + Sbjct: 30 LFSGLSQEEGNEIYSSLLEAGIPVEKSSGKEGVIISVPKQMSSDALRILQSQGLPRAKKT 89 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 S E+F K + + + + AL E+ T+ S+ G+++ARVHIV+P+ + ++ Sbjct: 90 SMGEVFKKESMI-SSPLEERARYLYALSQELEETLMSMDGVLSARVHIVLPERANPGEVL 148 Query: 169 ARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203 + +A+V ++ N S + + +R L+ ++P + Sbjct: 149 SPSSAAVFVKYENGSSFPAYVPRVRELIFKSIPGIT 184 >gi|15042153|gb|AAK81934.1|AF292566_18 RscJ [Pseudomonas fluorescens] Length = 271 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 9/172 (5%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDF-RI-SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L+ +L + N + L++ +I +I + +G ++SV ++ +G+A L A GLP Sbjct: 29 DRVELHRQLSEQEANEVIAELADKHIRALQIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + + F K T + + AL E+ T+ +I G++ ARVH+V+P+ + Sbjct: 89 LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147 Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD-----MGDVTVL 210 + +ASV I+ + A +R +VA+++P + +TV+ Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGMTTAVDNPQKLTVI 199 >gi|307947525|ref|ZP_07662858.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] gi|307769343|gb|EFO28571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Roseibium sp. TrichSKD4] Length = 250 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 10/197 (5%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-- 74 L + + + I++ + LY KL+ DVN ++ L I Sbjct: 4 LSSIKRFLPNGRFVAAILVAAFLAGCQSE-----LYSKLDERDVNEMAFVLESNGISVSR 58 Query: 75 -RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 R S+ ++ + +A LA GLP + E+F T+F ++ + Sbjct: 59 ERDSEGTYTLFIERGDTARAYGILAQNGLPRQKFDGLGEVFSSD-KLVSTAFEEKARFIH 117 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIR 192 A+ E++++I I+G+ +A VHI +P+ + A A+V I + I+ Sbjct: 118 AVTEELSKSISRIAGVTSAEVHITLPEKAPLEEETAPSRAAVFIYHSQGTDLNAQIPVIK 177 Query: 193 HLVAAAVPNLDMGDVTV 209 +LVA++V L DV+V Sbjct: 178 NLVASSVERLSYEDVSV 194 >gi|27376924|ref|NP_768453.1| RhcJ protein [Bradyrhizobium japonicum USDA 110] gi|12620520|gb|AAG60796.1|AF322012_101 RhcJ [Bradyrhizobium japonicum] gi|27350066|dbj|BAC47078.1| RhcJ protein [Bradyrhizobium japonicum USDA 110] Length = 287 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 8/184 (4%) Query: 31 VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPS 87 V + + + LY K++ + N + L +D D S+I V Sbjct: 21 VFLAMPLLLSLIGCKTD---LYTKIQEREANEMLALLLGKGVDAVRVVAKDGTSTIQVEE 77 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 + + L +GLP S + E+F K + + + V AL E++RTI I Sbjct: 78 KQLAYSIDLLNVEGLPRQSFKNLGEVF-KGSGLVASPIEERARYVYALSEELSRTISDID 136 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206 G+++ARVH+V+P R+ +ASV IR + + + I+ LVA ++ L Sbjct: 137 GVLSARVHVVLPKNDLLRQGATPSSASVFIRHGSSARLSALLPQIKMLVANSIEGLSYDK 196 Query: 207 VTVL 210 V V+ Sbjct: 197 VAVV 200 >gi|330963702|gb|EGH63962.1| type III secretion component [Pseudomonas syringae pv. actinidiae str. M302091] Length = 259 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86 ++ +++ + + +LY L + N + L I ++ DNG + V Sbjct: 7 VLRLLIVATLASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +A L GLP S ++ E+F K N + + V AL E++ T+ I Sbjct: 66 EKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205 GI++ARVH+V+PD +++ + +ASV++R + I+ LVA + L Sbjct: 125 DGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTLVANGISGLGYD 184 Query: 206 DVTVL 210 V+V Sbjct: 185 GVSVT 189 >gi|297748689|gb|ADI51235.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-EC] gi|297749569|gb|ADI52247.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia trachomatis D-LC] Length = 333 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 17 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 76 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 77 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 135 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 136 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 192 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 VP L +V+V+ L ++ Sbjct: 193 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 227 >gi|167724015|ref|ZP_02407251.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] gi|167849989|ref|ZP_02475497.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei B7210] Length = 262 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88 ++ +A + + LY L DVN + VAL E +D +G ++V Sbjct: 3 LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + A L +GLP S + LF K + T + I + + E++ T+ I G Sbjct: 62 QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 ++ ARV IV+P+ + +A+V I+ + + I+ LV +V L V Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180 Query: 208 TVL 210 +V Sbjct: 181 SVT 183 >gi|167820155|ref|ZP_02451835.1| type III secretion associated protein [Burkholderia pseudomallei 91] Length = 262 Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88 ++ +A + + LY L DVN + VAL E +D +G ++V Sbjct: 3 LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + A L +GLP S + LF K + T + I + + E++ T+ I G Sbjct: 62 QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 ++ ARV IV+P+ + +A+V I+ + + I+ LV +V L V Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180 Query: 208 TVL 210 +V Sbjct: 181 SVT 183 >gi|317407862|gb|EFV87788.1| BscJ protein [Achromobacter xylosoxidans C54] Length = 284 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 10/202 (4%) Query: 11 FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70 F+ + R + L +L+ + + A +L + + N + L +A Sbjct: 8 FRRLGARRGYRRVWLIGSLLLLLAMLTACG------ARVDLLAAVPEGEANEVLSVLLDA 61 Query: 71 NIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 I + S G +I+V + V +A L A+GLP + ++F K + + Sbjct: 62 GIAAQKSAGKAGVAINVQADQVAQALAVLRARGLPRERFDGMGQIFRKE-GLVSSPLEER 120 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS- 187 + AL E+A T+ + G++AARVH+V+P+ G + TA+V I+ + Sbjct: 121 ARYIYALSQELANTLSQMDGVIAARVHVVLPERGGVGEEATPSTAAVFIKTQPGYALDAL 180 Query: 188 AEAIRHLVAAAVPNLDMGDVTV 209 IR LV A+P L V+V Sbjct: 181 LPQIRRLVIHAIPGLSEDKVSV 202 >gi|76818699|ref|YP_335583.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] gi|76583172|gb|ABA52646.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b] Length = 262 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88 ++ +A + + LY L DVN + VAL E +D +G ++V Sbjct: 3 LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + A L +GLP S + LF K + T + I + + E++ T+ I G Sbjct: 62 QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 ++ ARV IV+P+ + +A+V I+ + + I+ LV +V L V Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180 Query: 208 TVL 210 +V Sbjct: 181 SVT 183 >gi|251789507|ref|YP_003004228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya zeae Ech1591] gi|247538128|gb|ACT06749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya zeae Ech1591] Length = 261 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 4/174 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMV 90 + + A L+ L +D N + AL +I + G SI + + Sbjct: 10 FLTLLLAMLIAGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDM 69 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A L A GLP + + ++F K T + + AL E+ T+ I G++ Sbjct: 70 ERAVNILNAAGLPRQARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVL 128 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 ARVH+V+P+ + + +A+V I+ S IR +VA+++P L Sbjct: 129 VARVHVVLPERIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 182 >gi|302185345|ref|ZP_07262018.1| putative type III secretion protein [Pseudomonas syringae pv. syringae 642] gi|256259415|gb|ACU65052.1| HrcJ [Pseudomonas syringae pv. syringae] Length = 276 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 86/186 (46%), Gaps = 10/186 (5%) Query: 34 MLFMAARFFVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMV 90 + + +++ + L+ KL +D N + LS +I+ N G S+ + +S + Sbjct: 8 LGMIGLVLLLSACGDEIELHGKLSENDANDVIAELSSKHIEATKRSNKEGVSVLLSASDI 67 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A L A GLP + + E+F K T + + AL E+ T+ I G++ Sbjct: 68 NRAVRVLEAAGLPRRTRTNLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVI 126 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DM 204 ARVH+V+P+ + + +A+V I+ + IR +V++++P + + Sbjct: 127 VARVHVVLPERVAPGEPVQPASAAVFIKHAASLDPDTVLPRIRRMVSSSIPGMAGALDNT 186 Query: 205 GDVTVL 210 ++V+ Sbjct: 187 EKLSVV 192 >gi|330876200|gb|EGH10349.1| type III secretion component [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 259 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86 ++ +++ + + +LY L + N + L I ++ DNG + V Sbjct: 7 VLRLLIVATLASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +A L GLP S ++ E+F K N + + V AL E++ T+ I Sbjct: 66 EKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205 GI++ARVH+V+PD +++ + +ASV++R + I+ LVA + L Sbjct: 125 DGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTLVANGISGLGYD 184 Query: 206 DVTVL 210 V+V Sbjct: 185 GVSVT 189 >gi|134282581|ref|ZP_01769285.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246138|gb|EBA46228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 269 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84 ++V ++ +A + + LY L DVN + VAL E +D +G ++ Sbjct: 6 LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64 Query: 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144 V + A L +GLP S + LF K + T + I + + E++ T+ Sbjct: 65 VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123 Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 I G++ ARV IV+P+ + +A+V I+ + + I+ LV +V L Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALTPQIKTLVMHSVEGLT 183 Query: 204 MGDVTVL 210 V+V Sbjct: 184 YDQVSVT 190 >gi|255348939|ref|ZP_05380946.1| type III secretion system protein, membrane component [Chlamydia trachomatis 70] gi|255503478|ref|ZP_05381868.1| type III secretion system protein, membrane component [Chlamydia trachomatis 70s] gi|255507156|ref|ZP_05382795.1| type III secretion system protein, membrane component [Chlamydia trachomatis D(s)2923] gi|289525604|emb|CBJ15082.1| type III secretion system protein, membrane component [Chlamydia trachomatis Sweden2] gi|296435164|gb|ADH17342.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/150] gi|296438884|gb|ADH21037.1| type III secretion system protein, membrane component [Chlamydia trachomatis E/11023] Length = 326 Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 19/215 (8%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 VP L +V+V+ L + Sbjct: 186 VPGLCPENVSVVSDRASYSDITINSPWGLSDEMDY 220 >gi|218887520|ref|YP_002436841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758474|gb|ACL09373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 277 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMV 90 L + + LY L N + L + G ++SV + Sbjct: 19 ALAVFLLMLLTGCK-AELYKGLNEEQANTMLATLLRHGVPAEKLAAGKEGYALSVERDQI 77 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A L LP + ++F + + ++ A+ E++ T I G++ Sbjct: 78 VRALEILRENSLPREQYQNLGKVF-SGDGMIASPSEEKARLAYAISQELSDTFSRIDGVL 136 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTV 209 ARVH+V+ + + +A+V +R S IR L A AVP LD V+V Sbjct: 137 TARVHVVLASSETASETRVPASAAVFLRHGPESPVVNLIPKIRELAAKAVPGLDYERVSV 196 Query: 210 L 210 + Sbjct: 197 M 197 >gi|237800789|ref|ZP_04589250.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023647|gb|EGI03704.1| type III secretion component [Pseudomonas syringae pv. oryzae str. 1_6] Length = 259 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86 ++ +++ + + +LY L + N + L I ++ DNG + V Sbjct: 7 VLRLLIVATLASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +A L GLP + ++ E+F K N + + V AL E++ T+ I Sbjct: 66 EKRFAEAMAALDDAGLPGQTFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205 GI++ARVH+V+PD +++ + +ASV++R + I+ LVA + L Sbjct: 125 DGILSARVHVVLPDNDLLKRVISPSSASVLVRYDPRTDINVLIPQIKTLVANGISGLGYD 184 Query: 206 DVTVL 210 V+V Sbjct: 185 GVSVT 189 >gi|15605288|ref|NP_220074.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis D/UW-3/CX] gi|76789296|ref|YP_328382.1| SctJ [Chlamydia trachomatis A/HAR-13] gi|237804910|ref|YP_002889064.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/TZ1A828/OT] gi|3329000|gb|AAC68161.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis D/UW-3/CX] gi|76167826|gb|AAX50834.1| SctJ [Chlamydia trachomatis A/HAR-13] gi|231273210|emb|CAX10123.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/TZ1A828/OT] gi|296436092|gb|ADH18266.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9768] gi|296437020|gb|ADH19190.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11222] gi|296437953|gb|ADH20114.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/11074] gi|297140453|gb|ADH97211.1| type III secretion system protein, membrane component [Chlamydia trachomatis G/9301] Length = 326 Score = 123 bits (309), Expect = 7e-26, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 VP L +V+V+ L ++ Sbjct: 186 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 220 >gi|325921922|ref|ZP_08183733.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas gardneri ATCC 19865] gi|325547624|gb|EGD18667.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 123 bits (309), Expect = 7e-26, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|255311377|ref|ZP_05353947.1| type III secretion system protein, membrane component [Chlamydia trachomatis 6276] gi|255317678|ref|ZP_05358924.1| type III secretion system protein, membrane component [Chlamydia trachomatis 6276s] Length = 326 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 VP L +V+V+ L ++ Sbjct: 186 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 220 >gi|188992467|ref|YP_001904477.1| HrcJ protein [Xanthomonas campestris pv. campestris str. B100] gi|167734227|emb|CAP52435.1| HrcJ protein [Xanthomonas campestris pv. campestris] Length = 254 Score = 123 bits (308), Expect = 9e-26, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|298487098|ref|ZP_07005148.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158341|gb|EFH99411.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 259 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + + +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R + I+ L Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173 Query: 195 VAAAVPNLDMGDVTVL 210 VA + L V+V Sbjct: 174 VANGISGLGYDGVSVT 189 >gi|21230690|ref|NP_636607.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769315|ref|YP_244077.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004] gi|21112279|gb|AAM40531.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574647|gb|AAY50057.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V A L G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|237802988|ref|YP_002888182.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/Jali20/OT] gi|231274222|emb|CAX11016.1| type III secretion system protein, membrane component [Chlamydia trachomatis B/Jali20/OT] Length = 326 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKYRGVLDNPNSIMVSKIKRLVASA 185 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 VP L +V+V+ L ++ Sbjct: 186 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 220 >gi|462730|sp|P33209|NOLT_RHIFR RecName: Full=Nodulation protein nolT; Flags: Precursor gi|152385|gb|AAB17677.1| nodulation protein [Sinorhizobium fredii] gi|19749322|gb|AAL98692.1| NolT [Sinorhizobium fredii] Length = 289 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY +L+ + N I L + +D R++ D S+I V ++ + L +GLP S Sbjct: 38 LYTQLQEREANEIVALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQSF 97 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+F + + + + V AL E++ TI I G+ +ARVH+V+P R Sbjct: 98 KNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAG 156 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR + + I+ LVA ++ L V V+ Sbjct: 157 DTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200 >gi|83645997|ref|YP_434432.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] gi|83634040|gb|ABC30007.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] Length = 265 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSM 89 +L F+ S + LY L + + L E ++ ++SV + Sbjct: 16 LLLGFLFVFILSGCKETLYSDLTEKEGAEMLSILLEEGLEAEKVPGQKGQTVALSVERAQ 75 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L ++G P S ELF K + + + + L EIA T+ + G+ Sbjct: 76 LSQAIRLLKSRGYPRDDFTSVGELF-KKDGLISSPLEERARYIYGLSQEIAATLSQLDGV 134 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 + ARVH+VMP++ + + +ASV I+ + I+ LV ++ L ++ Sbjct: 135 ITARVHVVMPEVENKKAPLKVSSASVFIKYESTVNLDDFVPQIKLLVNNSIEGLSYDNIA 194 Query: 209 V 209 V Sbjct: 195 V 195 >gi|330985209|gb|EGH83312.1| type III secretion component [Pseudomonas syringae pv. lachrymans str. M301315] Length = 259 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 12/196 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASLL-------QTCDIDLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R + I+ L Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173 Query: 195 VAAAVPNLDMGDVTVL 210 VA + L V+V Sbjct: 174 VANGISGLGYDGVSVT 189 >gi|166154774|ref|YP_001654892.1| type III secretion system protein, membrane component [Chlamydia trachomatis 434/Bu] gi|301336048|ref|ZP_07224292.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2tet1] gi|165930762|emb|CAP04259.1| type III secretion system protein, membrane component [Chlamydia trachomatis 434/Bu] Length = 325 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 20/215 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 VP L +V+V+ L + Sbjct: 185 VPGLYPENVSVVSDRASYSDITINGPWGLSDEMDY 219 >gi|323143306|ref|ZP_08077997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Succinatimonas hippei YIT 12066] gi|322416923|gb|EFY07566.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Succinatimonas hippei YIT 12066] Length = 252 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 5/183 (2%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSS 88 + + + + LY L SD N + L + +D + NG +I V Sbjct: 5 FLGSAVILSAMLLCGCREALYSNLTESDANEMLSTLLQRGVDAKKISEGKNGFTIEVDEQ 64 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 + ++ + LP S +F + ++ AL E++ T I G Sbjct: 65 DLVRSLEIIKEHSLPREQFQSLGSVF-SGQGMISSQTEEQARLAYALSQELSATFSRIDG 123 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDV 207 ++ ARVH+V+ + P+A+V IR S +I+ A +VP L V Sbjct: 124 VLDARVHVVLVQHEQSSGVTTPPSAAVFIRHTKESPVVDMISSIKDTTARSVPGLTHDRV 183 Query: 208 TVL 210 V+ Sbjct: 184 AVM 186 >gi|166714023|ref|ZP_02245230.1| HrpB3 [Xanthomonas oryzae pv. oryzicola BLS256] gi|61219462|gb|AAX40639.1| HrpB3 [Xanthomonas oryzae pv. oryzicola] Length = 254 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V PS V + L A GLP Sbjct: 23 LYSGLTENDANAMLEVLLHAGVDASKVTPDDGKTWAVNAPSDQVSYSLETLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ +V +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSMVPNIKTMVMHSVEGLTYENVSVT 186 >gi|166155649|ref|YP_001653904.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165931637|emb|CAP07213.1| type III secretion system protein, membrane component [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 325 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 20/215 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82 + F+ A FF ++ ++ L D N I V L + + S G S Sbjct: 10 LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69 Query: 83 -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198 TI+ + GIV A V I + TASV I+ + I+ LVA+A Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 VP L +V+V+ L + Sbjct: 185 VPGLYPENVSVVSDRASYSDITINGPWGLSDEMDY 219 >gi|331008651|gb|EGH88707.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 259 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + + +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R + I+ L Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173 Query: 195 VAAAVPNLDMGDVTVL 210 VA + L V+V Sbjct: 174 VANGISGLGYDGVSVT 189 >gi|30524897|gb|AAP34342.1|AF499777_10 HrcJ [Xanthomonas axonopodis pv. glycines] Length = 253 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D +++ + +I+ P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|221200558|ref|ZP_03573600.1| bcscJ [Burkholderia multivorans CGD2M] gi|221209215|ref|ZP_03582206.1| bcscJ [Burkholderia multivorans CGD2] gi|221170905|gb|EEE03361.1| bcscJ [Burkholderia multivorans CGD2] gi|221179899|gb|EEE12304.1| bcscJ [Burkholderia multivorans CGD2M] Length = 293 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|38639339|gb|AAR25805.1| BcscJ [Burkholderia multivorans E243] Length = 293 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|52631916|gb|AAU85366.1| nodulation protein [Sinorhizobium fredii] Length = 289 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY +L+ + N + L + +D R++ D S+I V ++ + L +GLP S Sbjct: 38 LYTQLQEREANEMLALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQSF 97 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+F + + + + V AL E++ TI I G+ +ARVH+V+P R Sbjct: 98 KNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAG 156 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR + + I+ LVA ++ L V V+ Sbjct: 157 DTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200 >gi|78045985|ref|YP_362160.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927680|ref|ZP_08188908.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas perforans 91-118] gi|462305|sp|P80152|HRB3_XANEU RecName: Full=Protein hrpB3; Flags: Precursor gi|398111|gb|AAA27604.1| hrpB3 [Xanthomonas campestris] gi|984880|gb|AAB08458.1| HrpB3 [Xanthomonas euvesicatoria] gi|78034415|emb|CAJ22060.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541881|gb|EGD13395.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas perforans 91-118] Length = 253 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|300693814|ref|YP_003749787.1| type III secretion system lipoprotein hrcj [Ralstonia solanacearum PSI07] gi|299075851|emb|CBJ35160.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum PSI07] Length = 269 Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L +D N + L +A +D + S Sbjct: 12 GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGVDAQKTSPDDGKTWS 66 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L A GLP + ++F K + T + + + + ++++T Sbjct: 67 VLVDDDAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + S +I++LV +V Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTSLLPSIKNLVVHSVEG 185 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 186 LTYENVAVT 194 >gi|9885635|gb|AAG01458.1|AF282857_7 HrcJ [Pantoea stewartii subsp. stewartii] Length = 259 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 4/173 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVG 91 ++ M+ L L +D N ++ L +I + +G ++ V ++ + Sbjct: 9 LILMSVLLLFGCNDQVELNHGLTENDANEVAAELGRYHIKAEKHTNKDGITVMVDTADLN 68 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 +A L A GLP + + E+F K T + + AL E+ T+ I G++ Sbjct: 69 RAVHILDAAGLPRPTRTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIV 127 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 ARVH+V+P+ + + +A+V I+ IR +VA+++P L Sbjct: 128 ARVHVVLPERVAPGEPILPASAAVFIKYRPELDPDVIEPRIRQMVASSLPGLA 180 >gi|221209594|ref|ZP_03582575.1| bcscJ [Burkholderia multivorans CGD1] gi|221170282|gb|EEE02748.1| bcscJ [Burkholderia multivorans CGD1] Length = 293 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|146305070|ref|YP_001185535.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Pseudomonas mendocina ymp] gi|145573271|gb|ABP82803.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pseudomonas mendocina ymp] Length = 272 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104 +L+ L D N + +L E I R G ++V ++ + +A L A GLP Sbjct: 20 DRTDLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPR 79 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + S E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 80 RARTSLGEIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAP 138 Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDV 207 + +A+V I+ + + I+ +V +++P L V Sbjct: 139 GEPVQPASAAVFIKHAASLEPDAVQRRIQQMVVSSIPGLASTGV 182 >gi|71734790|ref|YP_274723.1| type III secretion component [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555343|gb|AAZ34554.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|320324510|gb|EFW80587.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320328370|gb|EFW84373.1| type III secretion component, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330882195|gb|EGH16344.1| type III secretion component [Pseudomonas syringae pv. glycinea str. race 4] Length = 259 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + + +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R + I+ L Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173 Query: 195 VAAAVPNLDMGDVTVL 210 VA + L V+V Sbjct: 174 VANGISGLGYDGVSVT 189 >gi|16520038|ref|NP_444158.1| outermembrane protein RhcJ; component of type III secretion apparatus [Sinorhizobium fredii NGR234] gi|2497732|sp|P55714|NOLT_RHISN RecName: Full=Nodulation protein nolT; Flags: Precursor gi|2182731|gb|AAB91945.1| outermembrane protein RhcJ; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 289 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY +L+ + N + L ++ +D R++ D S+I V ++ + L A+GLP S Sbjct: 38 LYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQSF 97 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+F + + + + V AL E++ TI I G+ +ARVH+V+P R Sbjct: 98 KNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAG 156 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR + + I+ LVA ++ L V V+ Sbjct: 157 DTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200 >gi|1781392|gb|AAC44781.1| PscJ [Pseudomonas aeruginosa] Length = 248 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + + V S + +A L +G P Sbjct: 25 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 85 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190 >gi|21311402|gb|AAM46696.1|AF448202_7 HrcJ [Erwinia chrysanthemi] Length = 245 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 4/160 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104 L+ L +D N + AL +I + G SI + + +A L A GLP Sbjct: 8 DRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNAAGLPR 67 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 68 QARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAP 126 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 + +A+V I+ S IR +VA+++P L Sbjct: 127 GEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 166 >gi|300310135|ref|YP_003774227.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae SmR1] gi|300072920|gb|ADJ62319.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 8/175 (4%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 L L +D N I + L+ I+ + +G ++ V + +A + A GLP Sbjct: 26 MVVLQAALNDADANEIILVLNRKGIEVDKQKGKDGVTLLVKDVELSRATETMNAAGLPRR 85 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S ++ E+F K + + I + L E+ T+ +V+ARVH+V+P+ + Sbjct: 86 SLSNLGEVF-KKQGMISSPMEERIRYIHGLSEELESTMLQFDHVVSARVHVVLPERIAPG 144 Query: 166 KIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD----VTVLDSTGK 215 + +A+V ++ P + IR LVA+++P L D V+V+ G+ Sbjct: 145 EPIQPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGLASEDGRSKVSVVMMPGE 199 >gi|289624381|ref|ZP_06457335.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646620|ref|ZP_06477963.1| type III secretion component, putative [Pseudomonas syringae pv. aesculi str. 2250] gi|330868635|gb|EGH03344.1| type III secretion component [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 259 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76 R +L +I+ + + + +LY L + N + L I ++ Sbjct: 2 PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54 Query: 77 SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 DNG + V +A L GLP S ++ E+F K N + + V AL Sbjct: 55 QDNGQLKVMVDEKRFVQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194 E++ T+ I GI++ARVH+V+PD +++ + +ASV++R + I+ L Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173 Query: 195 VAAAVPNLDMGDVTVL 210 VA + L V+V Sbjct: 174 VANGISGLGYDGVSVT 189 >gi|161520293|ref|YP_001583720.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia multivorans ATCC 17616] gi|189353528|ref|YP_001949155.1| type III secretion protein SctJ [Burkholderia multivorans ATCC 17616] gi|160344343|gb|ABX17428.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia multivorans ATCC 17616] gi|189337550|dbj|BAG46619.1| type III secretion protein SctJ [Burkholderia multivorans ATCC 17616] Length = 293 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G++ ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|300697469|ref|YP_003748130.1| type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CFBP2957] gi|299074193|emb|CBJ53738.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CFBP2957] Length = 269 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L D N + L +A ID + S Sbjct: 12 GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTSPDDGKTWS 66 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L A GLP + ++F K + T + + + + ++++T Sbjct: 67 VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + + +I++LV +V Sbjct: 126 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 186 LTYENVAVT 194 >gi|299069234|emb|CBJ40494.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum CMR15] Length = 269 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L +D N + L +A ID + S Sbjct: 12 GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWS 66 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L GLP + ++F K + T + + + + ++++T Sbjct: 67 VLVDDDAFARSMEVLHGHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + + +I++LV +V Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 186 LTYENVAVT 194 >gi|94496761|ref|ZP_01303336.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp. SKA58] gi|94423774|gb|EAT08800.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp. SKA58] Length = 246 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 5/163 (3%) Query: 52 YVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQGLPSSSSN 108 Y +L+ N + AL +A+ID S + +++V KA L A+GLP Sbjct: 27 YGQLKEGQANDMIAALRDAHIDAAKSADKDGQWAVAVSPDDFSKAIQLLRAKGLPREDFA 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + LF+K + + + L E++ T+ I G+V ARVH+ MP+ Sbjct: 87 NLGSLFEKK-GLVSSPVEERARLIYGLSQELSHTVSEIDGVVQARVHLAMPEADPLSDKI 145 Query: 169 ARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A++ ++ AI+ LV ++ L V+V+ Sbjct: 146 KPASAAIFVKYQPGYDLRSQTGAIKSLVTNSIEGLAYDKVSVV 188 >gi|58579711|ref|YP_198727.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621745|ref|YP_449117.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|7350916|gb|AAF61284.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|9711586|dbj|BAB07855.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|24251290|gb|AAN46409.1| HrpB3 [Xanthomonas oryzae pv. oryzae] gi|50428349|dbj|BAD29986.1| HrcJ [Xanthomonas oryzae pv. oryzae] gi|58424305|gb|AAW73342.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365685|dbj|BAE66843.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 253 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 22 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 82 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 140 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ +V +V L +V+V Sbjct: 141 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 185 >gi|294625833|ref|ZP_06704449.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|159024050|gb|ABW87278.1| HrcJ [Xanthomonas fuscans subsp. fuscans] gi|292599861|gb|EFF43982.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 253 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|219566957|dbj|BAH04988.1| Hrp conserved lipoprotein transmembrane protein [Ralstonia solanacearum] Length = 269 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L +D N + L +A ID + S Sbjct: 12 GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWS 66 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L A GLP + ++F K + T + + + + ++++T Sbjct: 67 VLVDDDAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + + +I++LV +V Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 186 LTYENVAVT 194 >gi|207724588|ref|YP_002254985.1| hrp lipoprotein hrcj [Ralstonia solanacearum MolK2] gi|206589810|emb|CAQ36771.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum MolK2] Length = 268 Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L D N + L +A ID + S Sbjct: 11 GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWS 65 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L A GLP + ++F K + T + + + + ++++T Sbjct: 66 VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 124 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + + +I++LV +V Sbjct: 125 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 184 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 185 LTYENVAVT 193 >gi|207739223|ref|YP_002257616.1| hrp lipoprotein hrcj [Ralstonia solanacearum IPO1609] gi|206592596|emb|CAQ59502.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum IPO1609] Length = 267 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L D N + L +A ID + S Sbjct: 10 GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWS 64 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L A GLP + ++F K + T + + + + ++++T Sbjct: 65 VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 123 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + + +I++LV +V Sbjct: 124 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 183 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 184 LTYENVAVT 192 >gi|323388146|gb|ADX60342.1| inner/outer membrane type III secretion protein RscJ [Pseudomonas fluorescens] Length = 268 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 9/170 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 L+ +L + N + L++ I + + +G + V +S + +A L A GLP + Sbjct: 24 VELHSRLSEQEANEVVAELADKQIRAQKVPAKDGVVVRVNASDISRAVRTLEAAGLPKLA 83 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 ++ ++F K T + + AL E+ T+ +I G++ ARVH+V+P+ + + Sbjct: 84 RSTLGDIFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 142 Query: 167 IGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DMGDVTVL 210 +ASV I+ + +R +VA+++P + + +TV+ Sbjct: 143 PVQPASASVFIKHDPRLEPDNIRPRVRRMVASSIPGMAAAVENTQKLTVV 192 >gi|21241182|ref|NP_640764.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106489|gb|AAM35300.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306] Length = 253 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D +++ + +I+ P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLLPNIKTLVMHSVEGLTYENVSVT 186 >gi|325917018|ref|ZP_08179257.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas vesicatoria ATCC 35937] gi|325536769|gb|EGD08526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI----SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D +I+ P + V + L A G+P Sbjct: 23 LYSGLTENDANDMLAVLLTAGVDAEKVTPDDGKTWAINAPHAQVAYSLEVLRAHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S +I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186 >gi|188574352|ref|YP_001911281.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518804|gb|ACD56749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 246 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 15 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 74 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 75 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 133 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ +V +V L +V+V Sbjct: 134 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 178 >gi|120609169|ref|YP_968847.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Acidovorax citrulli AAC00-1] gi|58700620|gb|AAW81011.1| HrcJ [Acidovorax citrulli] gi|120587633|gb|ABM31073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax citrulli AAC00-1] Length = 287 Score = 120 bits (301), Expect = 6e-25, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQGLPSSS 106 LY K +D N + AL E+ ID + + ++ V S V ++ L + GLP Sbjct: 35 LYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++ T+ I G+V ARV IV+P+ Sbjct: 95 HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153 Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ + I+++VA +V L +VTV Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198 >gi|83747854|ref|ZP_00944887.1| HrcJ [Ralstonia solanacearum UW551] gi|83725501|gb|EAP72646.1| HrcJ [Ralstonia solanacearum UW551] Length = 269 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L D N + L +A ID + S Sbjct: 12 GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWS 66 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L A GLP + ++F K + T + + + + ++++T Sbjct: 67 VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + + +I++LV +V Sbjct: 126 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 186 LTYENVAVT 194 >gi|17549088|ref|NP_522428.1| Hrp conserved lipoprotein HRCJ transmembrane [Ralstonia solanacearum GMI1000] gi|6066708|emb|CAB58254.1| HrpI protein [Ralstonia solanacearum] gi|17431339|emb|CAD18018.1| hrp conserved lipoprotein hrcj transmembrane [Ralstonia solanacearum GMI1000] gi|1097287|prf||2113360N hrpI gene Length = 269 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 11/189 (5%) Query: 27 SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82 ++V + L L+ +L +D N + L +A ID + S Sbjct: 12 GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWS 66 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ L A GLP + ++F K + T + + + + ++++T Sbjct: 67 VLVDDDAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 + I G+ A V IV+P+ + +ASV I+ + + +I++LV +V Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185 Query: 202 LDMGDVTVL 210 L +V V Sbjct: 186 LTYENVAVT 194 >gi|326794378|ref|YP_004312198.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Marinomonas mediterranea MMB-1] gi|326545142|gb|ADZ90362.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Marinomonas mediterranea MMB-1] Length = 265 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ KL D N + L+ +I+ + G ++ V +S + +A L A GLP Sbjct: 26 LHKKLSEEDANEVIAELASRHIEAEKKATKEGVTVLVEASSMARAVRILEAAGLPRKPRA 85 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + + + AL E+ TI I GI+ ARVH+V+P+ + + Sbjct: 86 NFGEVFKKEGVI-SSPLEERARYIYALSQELESTISQIDGILIARVHVVLPERIAPGEAV 144 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD--MGDVTVL 210 +++V I+ I LV ++P L ++V+ Sbjct: 145 QPASSAVFIKHRPDLDPDVIRPRIERLVRTSIPGLSEKPDKLSVV 189 >gi|313110409|ref|ZP_07796295.1| pscJ type III export protein [Pseudomonas aeruginosa 39016] gi|310882797|gb|EFQ41391.1| pscJ type III export protein [Pseudomonas aeruginosa 39016] Length = 244 Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + + V S + +A L +G P Sbjct: 21 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 81 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 139 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 140 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 186 >gi|188532680|ref|YP_001906477.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] gi|188027722|emb|CAO95575.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 257 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + +G ++ V + + +A L A GLP Sbjct: 22 DRVELNHGLTENDANEVAAELGRYHIQAEKRNNKDGITVLVNAEELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206 + +A+V I+ IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLAARS 183 >gi|15596920|ref|NP_250414.1| type III export protein PscJ [Pseudomonas aeruginosa PAO1] gi|116049673|ref|YP_791522.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14] gi|254240067|ref|ZP_04933389.1| type III export protein PscJ [Pseudomonas aeruginosa 2192] gi|9947698|gb|AAG05112.1|AE004598_11 type III export protein PscJ [Pseudomonas aeruginosa PAO1] gi|115584894|gb|ABJ10909.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126193445|gb|EAZ57508.1| type III export protein PscJ [Pseudomonas aeruginosa 2192] Length = 248 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + + V S + +A L +G P Sbjct: 25 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 85 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190 >gi|107101154|ref|ZP_01365072.1| hypothetical protein PaerPA_01002186 [Pseudomonas aeruginosa PACS2] gi|296389892|ref|ZP_06879367.1| type III export protein PscJ [Pseudomonas aeruginosa PAb1] Length = 238 Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + + V S + +A L +G P Sbjct: 15 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 74 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 75 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 133 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 134 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 180 >gi|167923131|ref|ZP_02510222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei BCC215] Length = 243 Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 6/164 (3%) Query: 52 YVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107 Y L DVN + VAL E +D +G ++V + A L +GLP S Sbjct: 2 YTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGDQLVHAMEVLRTRGLPRSKF 61 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + LF K + T + I + + E++ T+ I G++ ARV IV+P+ + Sbjct: 62 DDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQT 120 Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ + + I+ LV +V L V+V Sbjct: 121 AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSVT 164 >gi|218892324|ref|YP_002441191.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58] gi|254234822|ref|ZP_04928145.1| type III export protein PscJ [Pseudomonas aeruginosa C3719] gi|126166753|gb|EAZ52264.1| type III export protein PscJ [Pseudomonas aeruginosa C3719] gi|218772550|emb|CAW28333.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58] Length = 248 Score = 120 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + + V S + +A L +G P Sbjct: 25 VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164 + ++ ++F K + + A EI+ T+ I G++ ARVH+V+P + Sbjct: 85 NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + +ASV I+ + I+ LV + L ++V+ Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190 >gi|54124981|gb|AAV30249.1| YscJ [Aeromonas hydrophila] Length = 245 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 7/184 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSS 88 +M + + LY + + N + L I + + V S Sbjct: 5 MLMGVVFTSLLLGGCK-VELYTGVSQKEGNEMLALLRTEGISSDKQPDKDGHVKLLVEES 63 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 V +A L +G P S ++ ++F K + + A EI+ T+ I G Sbjct: 64 DVAQAIEALKRKGYPRESFSTLQDVFPKD-GLISSPTEERARLNYAKAQEISHTLSEIDG 122 Query: 149 IVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206 ++ ARVH+V+P+ +ASV I+ + I+ LV ++ L Sbjct: 123 VLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDR 182 Query: 207 VTVL 210 ++V+ Sbjct: 183 ISVV 186 >gi|94987605|ref|YP_595538.1| putative type III secretion protein [Lawsonia intracellularis PHE/MN1-00] gi|94731854|emb|CAJ55217.1| putative type III secretion protein [Lawsonia intracellularis PHE/MN1-00] Length = 278 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 +Y L N + L + I + G +I V S + ++ L G P Sbjct: 43 VEVYQGLNEMQANAMLATLLKHGIVAEKQNTGKAGYTIRVDKSRLAESLELLRESGFPKE 102 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S +F ++ + AL E+A T ISG+++ARVH+ + Sbjct: 103 QYKSLGSIF-SGEGMIASASEDQARLSYALSQELAGTFSRISGVLSARVHVALASGDQEL 161 Query: 166 KIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210 + +A++ + S IR L + +VP L V+V+ Sbjct: 162 EQRTPASAAIFLLHTPSSPVVNLVPKIRELTSMSVPELSPDKVSVV 207 >gi|294665985|ref|ZP_06731248.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604233|gb|EFF47621.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 253 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A GLP Sbjct: 23 LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G+++A V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|289663765|ref|ZP_06485346.1| HrcJ protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 254 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A G+P Sbjct: 23 LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 82 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 83 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 142 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186 >gi|89111146|dbj|BAE80236.1| HrcJ [Acidovorax avenae subsp. avenae] Length = 287 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISD----NGSSISVPSSMVGKARIHLAAQGLPSSS 106 LY + +D N + AL E+ ID + ++ V S V ++ L + GLP Sbjct: 35 LYTRQTEADANDMVAALLESGIDAGKASADAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++ T+ I G+V ARV IV+P+ Sbjct: 95 HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153 Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ + I+++VA +V L +VTV Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198 >gi|27550044|gb|AAO18027.1| LscJ [Photorhabdus luminescens] Length = 245 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSM 89 I+ M A + + LY + + N + L EA I +G+ + V S Sbjct: 6 IICVMLAVLMLTGCKIE-LYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESD 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 V +A L +G P + +S ++F K + + A EIART+ I G+ Sbjct: 65 VAQAVEVLKRKGYPRENFSSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGV 123 Query: 150 VAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 + ARVH+V+P+ K + ++SV I+ + I+ LV ++ L + Sbjct: 124 LVARVHVVLPEEQDKLGKKLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRI 183 Query: 208 TVL 210 +V+ Sbjct: 184 SVV 186 >gi|310766432|gb|ADP11382.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia sp. Ejp617] Length = 259 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + +G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 + +A+V I+ IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGLA 180 >gi|253988512|ref|YP_003039868.1| type III secretion component protein sctj [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637906|emb|CAR66535.1| type iii secretion component protein sctj [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779962|emb|CAQ83123.1| type iii secretion component protein sctj [Photorhabdus asymbiotica] Length = 245 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSM 89 I+ + A + + LY + + N + L EA I +G+ + V S Sbjct: 6 IICVLLAVLMLAGCKIE-LYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESD 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 V +A L ++G P + +S ++F K + + A EIART+ I G+ Sbjct: 65 VAQAVEVLKSKGYPRENFSSLQDVFPKD-GLISSPVEERARLNFAKAQEIARTLSEIDGV 123 Query: 150 VAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 + ARVH+V+P+ K ++SV I+ + I+ LV ++ L + Sbjct: 124 LVARVHVVLPEEQDRLGKKLLPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRI 183 Query: 208 TVL 210 +V+ Sbjct: 184 SVV 186 >gi|259909704|ref|YP_002650060.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96] gi|76152302|gb|ABA39803.1| HrcJ [Erwinia pyrifoliae] gi|224965326|emb|CAX56858.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96] gi|283479790|emb|CAY75706.1| Type III secretion inner-membreane protein HrcJ [Erwinia pyrifoliae DSM 12163] Length = 259 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + +G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 + +A+V I+ IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGLA 180 >gi|37527647|ref|NP_930991.1| Type III secretion component protein SctJ [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787082|emb|CAE16157.1| Type III secretion component protein SctJ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 245 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSM 89 I+ M A + + LY + + N + L EA I +G+ + V S Sbjct: 6 IICVMLAVLMLTGCKIE-LYTDVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESD 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 V +A L +G P + +S ++F K + + A EIART+ I G+ Sbjct: 65 VAQAVEVLKRKGYPRENFSSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGV 123 Query: 150 VAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 + ARVH+V+P+ K + ++SV I+ + I+ LV ++ L + Sbjct: 124 LVARVHVVLPEEQDRLGKKLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRI 183 Query: 208 TVL 210 +V+ Sbjct: 184 SVV 186 >gi|289668187|ref|ZP_06489262.1| HrcJ protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 246 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106 LY L +D N + L A +D D+G + +V P V + L A G+P Sbjct: 15 LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 74 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K + T + + + + ++++T+ +I G++AA V IV+P+ Sbjct: 75 HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 133 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ S S I+ LV +V L +V+V Sbjct: 134 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 178 >gi|238785747|ref|ZP_04629720.1| Type III secretion system apparatus lipoprotein [Yersinia bercovieri ATCC 43970] gi|238713330|gb|EEQ05369.1| Type III secretion system apparatus lipoprotein [Yersinia bercovieri ATCC 43970] Length = 236 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 8/227 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSM 89 ++ ++ + LY L + N++ L I + S+SV + Sbjct: 1 MVATWLVVVSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSDKGGAVSLSVDKNQ 59 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P + ELF + ++ V E ++ + + G+ Sbjct: 60 FINAVELLRQNGFPRQQFTTVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 118 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVT 208 + A V I MP K ASV I+ I++L+ AVP +D ++ Sbjct: 119 IHADVTIAMPAPT-DGKSSVPHAASVFIKYSPEVNLLIYQPQIKNLIRDAVPGIDYAQIS 177 Query: 209 VLDSTGKL-LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 V+ +A ++ +G+ L + +++ + L +G Sbjct: 178 VVMQPANYRFSATPPAQSGMGRGLQWLLRHGEIVQIVLGALLILLVG 224 >gi|46398281|gb|AAS91835.1| AscJ [Aeromonas hydrophila] Length = 246 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L I +G+ + V S V +A L +G P Sbjct: 21 VELYTGVSQKEGNEMLALLQTEGISSDKQPDKDGNIKLLVEESDVAQAIETLKRKGYPRE 80 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF 164 S ++ ++F K + + A EI+ T+ I G++ ARVH+V+P+ F Sbjct: 81 SFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDGVLVARVHVVLPEGNEGF 139 Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 K + +ASV I+ + I+ LV ++ L ++V+ Sbjct: 140 NKKTSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDRISVV 186 >gi|33593247|ref|NP_880891.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|29603227|emb|CAC79572.1| bscJ [Bordetella pertussis Tohama I] gi|33563622|emb|CAE42523.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382656|gb|AEE67503.1| putative type III secretion protein [Bordetella pertussis CS] Length = 274 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|2935534|gb|AAC38609.1| BscJ [Bordetella bronchiseptica] Length = 274 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|33600610|ref|NP_888170.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33568209|emb|CAE32122.1| putative type III secretion protein [Bordetella bronchiseptica RB50] Length = 274 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|271500435|ref|YP_003333460.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya dadantii Ech586] gi|270343990|gb|ACZ76755.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya dadantii Ech586] Length = 268 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 4/160 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104 L+ L +D N + AL +I + G SI + + ++ L A GLP Sbjct: 24 DRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERSVNILNAAGLPR 83 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 84 QARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAP 142 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 + +A+V I+ S IR +VA+++P L Sbjct: 143 GEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 182 >gi|33596836|ref|NP_884479.1| putative type III secretion protein [Bordetella parapertussis 12822] gi|33573537|emb|CAE37528.1| putative type III secretion protein [Bordetella parapertussis] Length = 274 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106 L ++ N + AL EA I + G ++SVP+ V ++ L A GLP Sbjct: 33 VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + +F K + + + AL E+A T+ I G+++ARVH+V+P+ G+ + Sbjct: 93 FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 TA V ++ + + IR LV A+P L V+V Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195 >gi|326315351|ref|YP_004233023.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax avenae subsp. avenae ATCC 19860] gi|89111179|dbj|BAE80268.1| HrcJ [Acidovorax avenae subsp. avenae] gi|323372187|gb|ADX44456.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 287 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQGLPSSS 106 L+ + +D N + AL E+ ID + + ++ V S V ++ L + GLP Sbjct: 35 LFTRQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + E+F K T + + + + ++ T+ I G+V ARV IV+P+ Sbjct: 95 HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153 Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ + I+++VA +V L +VTV Sbjct: 154 TVKPASAAVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198 >gi|194292006|ref|YP_002007913.1| sctj: non flagellar t3S system conserved transmembrane lipoprotein. yscj/flif family. [Cupriavidus taiwanensis LMG 19424] gi|193225910|emb|CAQ71857.1| SctJ: non flagellar T3S system conserved transmembrane lipoprotein. yscJ/FliF family [Cupriavidus taiwanensis LMG 19424] Length = 262 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 11/169 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI---SDNGSS------ISVPSSMVGKARIHLAAQG 101 LY L + N++ AL+ ID +G + + V S + A L ++G Sbjct: 30 LYASLNEPEANQVLAALTAEGIDAEKARADTSGGTGEGQWRVRVEESQLPAALEILRSEG 89 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S ++F K T + + + AL E++ T+++I G+V ARVH+V+P Sbjct: 90 LPGERFASLGQVFQK-QGLVATPTEERMRYIFALSQELSETLRNIDGVVTARVHVVIPAT 148 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTV 209 +A+V I+ + + ++ +VA ++ + +V++ Sbjct: 149 DPLSDKIRPSSAAVFIKHRADTDLRLLVPTVKDMVAHSIEGVTHDNVSL 197 >gi|13475299|ref|NP_106863.1| nodulation protein NOLT [Mesorhizobium loti MAFF303099] gi|14026050|dbj|BAB52649.1| nodulation protein; NolT [Mesorhizobium loti MAFF303099] Length = 279 Score = 118 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY +L+ + N + L + + D S++ V ++ + L +GLP S Sbjct: 28 LYTQLQEREANEMLALLMDNGVHAVRVAAKDGTSTVQVDEKLLAYSIDLLNGKGLPRQSF 87 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+F + + + + V AL E++RTI I G+ + RVH+V+P R Sbjct: 88 KNLGEIF-QGSGLIASPTEERARYVYALSEELSRTISDIDGVFSVRVHVVLPHNDLLRAG 146 Query: 168 GARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV IR + I+ LVA ++ L V V+ Sbjct: 147 ATPSSASVFIRHDAKADLSVLLPKIKMLVADSIEGLSYDKVEVV 190 >gi|292487032|ref|YP_003529902.1| type III secretion inner-membreane protein HrcJ [Erwinia amylovora CFBP1430] gi|292900583|ref|YP_003539952.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|1336088|gb|AAB49174.1| HrcJ [Erwinia amylovora] gi|291200431|emb|CBJ47559.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552449|emb|CBA19494.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora CFBP1430] Length = 260 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 4/160 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 + +A+V I+ IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLA 180 >gi|145284368|gb|ABP51949.1| AscJ [Aeromonas veronii bv. sobria] Length = 246 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 7/184 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSS 88 +M + A ++ LY + + N + L I + + V S Sbjct: 5 MLMGVLGASLLLSGCK-VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEES 63 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 V +A L +G P S ++ ++F K + + A EI+ T+ I G Sbjct: 64 DVAQAIETLKRKGYPKESFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDG 122 Query: 149 IVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206 ++ ARVH+V+P+ +ASV I+ + I+ LV ++ L Sbjct: 123 VLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDR 182 Query: 207 VTVL 210 ++V+ Sbjct: 183 ISVV 186 >gi|145301433|ref|YP_001144272.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449] gi|66947987|emb|CAE83124.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida] gi|142856315|gb|ABO92524.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 242 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 7/184 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSS 88 +M + A +N LY + + N + L I + + V S Sbjct: 1 MLMGVLGASLLLNGCK-VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEES 59 Query: 89 MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148 V +A L +G P S ++ ++F K + + A EI+ T+ I G Sbjct: 60 DVAQAIETLKRKGYPKESFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDG 118 Query: 149 IVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206 ++ ARVH+V+P+ +ASV I+ + I+ LV ++ L Sbjct: 119 VLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDR 178 Query: 207 VTVL 210 ++V+ Sbjct: 179 ISVV 182 >gi|312171103|emb|CBX79362.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora ATCC BAA-2158] Length = 260 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 4/160 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104 L L +D N ++ L +I + G ++ V ++ + +A L A GLP Sbjct: 22 DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + + E+F K T + + AL E+ T+ I G++ ARVH+V+P+ + Sbjct: 82 PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140 Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 + +A+V I+ IR +VA+++P L Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLA 180 >gi|325273533|ref|ZP_08139766.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] gi|324101334|gb|EGB98947.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51] Length = 154 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 58/128 (45%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69 F ++ + R + L + + + A + P Y LY L D ++ L+ Sbjct: 27 FLENIAQMPMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 A+I + + N ++ V S + +AR+ LAA G+ S N G+EL DK G + FM+ Sbjct: 87 ADIPYNVEPNSGALLVKSDDLARARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146 Query: 130 TRVRALEG 137 R L G Sbjct: 147 RYRRRLGG 154 >gi|329901481|ref|ZP_08272819.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae bacterium IMCC9480] gi|327549089|gb|EGF33689.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae bacterium IMCC9480] Length = 245 Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 8/170 (4%) Query: 48 YDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSS 105 NL L+ +D N I L I+ + + G +++V + V +A + A GLP Sbjct: 1 MSNLQTNLQDADANEIVALLRHNGIEAKKVTAKEGITLTVHEADVPRATDIMRAAGLPKR 60 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S + +F K T + + + AL E+ T+Q +V+ARVH+V+P+ + Sbjct: 61 SLANLGTVF-KKEGMISTPLEERVRYIHALSEELEFTLQQFDHVVSARVHVVLPERIAPG 119 Query: 166 KIGARPTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLD----MGDVTVL 210 + +A+V ++ + I +LVA+++P L V+V+ Sbjct: 120 EPIQPSSAAVFVKYTEPFDEDTNIPRITNLVASSIPGLSGIEGRSKVSVV 169 >gi|307131216|ref|YP_003883232.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii 3937] gi|306528745|gb|ADM98675.1| Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii 3937] Length = 236 Score = 116 bits (291), Expect = 8e-24, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L +D N + AL +I G SI + + +A L A GLP + Sbjct: 3 LHRGLSENDANEVIAALGGYHIGAEKRTEKTGVSILIDVKDMERAVNILNAAGLPRQART 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F K T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 63 NLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGEPI 121 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203 +A+V I+ S IR +VA+++P L Sbjct: 122 QPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 157 >gi|319795607|ref|YP_004157247.1| type III secretion apparatus lipoprotein, yscj/hrcj family [Variovorax paradoxus EPS] gi|315598070|gb|ADU39136.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Variovorax paradoxus EPS] Length = 267 Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 5/165 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 ++ L + N I VAL+ ID R+ + V S +G A L AQGLP+ Sbjct: 35 VAIFSNLNEVEANEIVVALAAEGIDASKTRLEGTNWQVDVEESRMGTALEILRAQGLPAE 94 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 S ++F K T + + + A+ E+A+T++++ G+VAARVH+V+P Sbjct: 95 RYASMGDVFQK-QGLVSTPSEERMRYIYAVSQELAQTLRTVDGVVAARVHVVIPANDPLS 153 Query: 166 KIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209 +A+V I+ + A++ +VA ++ L V++ Sbjct: 154 DKLRPSSAAVFIKHRPDVDIRLLSSALKDMVAHSIEGLSHEQVSL 198 >gi|91782699|ref|YP_557905.1| secretory protein YscJ/FliF [Burkholderia xenovorans LB400] gi|91686653|gb|ABE29853.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia xenovorans LB400] Length = 281 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105 +L+ L+ NRI ALS I+ ++ D +I+V + A +A LP Sbjct: 19 TSLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDADAVVATELASAYALPRG 78 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + +LF + + V L E++ T++ + G++ ARVHIV+P+ Sbjct: 79 GHANLGDLF-SRQGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMD 137 Query: 166 KIGAR-PTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 P+ASVM+R + + IR LVA V L V++ Sbjct: 138 STQDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184 >gi|238752365|ref|ZP_04613843.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei ATCC 43380] gi|238709406|gb|EEQ01646.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei ATCC 43380] Length = 236 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 7/206 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSMV 90 M + ++ LY L + N++ L I G ++ SV S Sbjct: 1 MALLLLVISLSGCGMA-LYSGLSEEEANQMLALLMLHQIKAEKQAEKGGTVGLSVDKSQF 59 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ELF + ++ V E ++ + + G++ Sbjct: 60 INAVELLRQNGFPRQKFATVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVI 118 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A V I MP K ASV I+ S + I++L+ +P ++ ++V Sbjct: 119 RANVSIAMPAPT-DGKNSVPNAASVFIKYSPEVNLLSYQTQIKNLIHDGIPGINYSQISV 177 Query: 210 LDSTGKLLTANEMERNILGKSLSIVQ 235 + + + S+ Sbjct: 178 VMQSANFRFSATTATTQSRSQASVQW 203 >gi|328468926|gb|EGF39886.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus 10329] Length = 248 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 14/225 (6%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMV 90 L + F+ LY + + N + L + + + + V SS + Sbjct: 8 ALCLVLALFLVGCQ-TELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLMVDSSQI 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L +G P ++ E+F K + + + V A E++ T+ I G++ Sbjct: 67 AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 125 Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+V+ D +ASV I+ S I+ LV ++ L+ ++ Sbjct: 126 VARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRIS 185 Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 V+ E + +S + ++ L L Sbjct: 186 VV-------MVPSSEVRVTTQSNQFKSILSVQVTKETANHLIGIL 223 >gi|167842284|ref|ZP_02468968.1| type III secretion system apparatus lipoprotein [Burkholderia thailandensis MSMB43] Length = 247 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 16/198 (8%) Query: 17 LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR- 75 + R L +L + LY L ++ N++ L +ID Sbjct: 1 MSARRTHWLGVGLLACALAGC----------KTELYSNLPEAEANQMLALLMLRHIDADK 50 Query: 76 --ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 I D +I V A L GLP+ + E+F + ++ Sbjct: 51 KVIKDGNVTIRVEPGQFVNAVELLRQNGLPARKLATMEEMFPSGQ-LVTSPAQEQAKIQF 109 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIR 192 E ++ + ++++ G++ A+V + R+ P+A+V ++ + + IR Sbjct: 110 LKEQQLEKMLRAMDGVINAQVSVAEGAAQ-DRRDPEPPSAAVFVKYSPEYNFAARVPEIR 168 Query: 193 HLVAAAVPNLDMGDVTVL 210 LV + VPNL V+V+ Sbjct: 169 SLVVSGVPNLSPERVSVV 186 >gi|212702675|ref|ZP_03310803.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098] gi|212673947|gb|EEB34430.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098] Length = 260 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 5/163 (3%) Query: 52 YVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 Y L N++ L I+ NG ++ V + +A L LP + Sbjct: 20 YSGLSEDQANQMLSTLLRRGIEAEKQAAGKNGYTLLVDDDQLVRALQVLKENSLPREAFK 79 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F TS +Q AL E+A T+ I G++ ARVH+V+ I Sbjct: 80 NLGEVFAGDGMISSTSEVQ-ARMSYALSQELADTLSRIDGVLTARVHVVLGVNDKVNNIT 138 Query: 169 ARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210 P+A+V +R S IR LVA AV +L +V+V+ Sbjct: 139 IAPSAAVFLRHTLDSPVVNLVPEIRELVAGAVASLKYDNVSVM 181 >gi|15835462|ref|NP_297221.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] gi|270285642|ref|ZP_06195036.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] gi|270289651|ref|ZP_06195953.1| type III secretion protein SctJ [Chlamydia muridarum Weiss] gi|301337038|ref|ZP_07225240.1| type III secretion protein SctJ [Chlamydia muridarum MopnTet14] gi|7190875|gb|AAF39646.1| type III secretion protein SctJ [Chlamydia muridarum Nigg] Length = 328 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 80/216 (37%), Gaps = 21/216 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI------------SDNG 80 + F+ A F ++ ++ L + N I V L + + S+ Sbjct: 10 LFFIFALFCCSACDSRSMIAHGLTGREANEIVVLLVSKGVSAQKVPQVAGSSGGGSSEQL 69 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ISVP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 WDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197 TI+ + GIV A V I + TASV I+ + I+ LVA+ Sbjct: 129 TTIRKMDGIVDASVQISFSPE----EDQLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 184 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 AVP L +V+V+ L + Sbjct: 185 AVPGLCPENVSVVSDRASYSDITINGPWGLSDEIDY 220 >gi|296162486|ref|ZP_06845277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. Ch1-1] gi|295887299|gb|EFG67126.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia sp. Ch1-1] Length = 281 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 6/167 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105 +L+ L+ NRI ALS I+ ++ D +I+V A +A LP Sbjct: 19 TSLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDEDAVIATELASAYALPRG 78 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + +LF + + V L E++ T++ + G++ ARVHIV+P+ Sbjct: 79 GHANLGDLF-SRQGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMD 137 Query: 166 KIGAR-PTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 P+ASVM+R + + IR LVA V L V++ Sbjct: 138 PAQDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184 >gi|282891204|ref|ZP_06299707.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498897|gb|EFB41213.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] Length = 321 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 19/209 (9%) Query: 25 LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF------RISD 78 + S ++ + L A + + L+ + N I V LS ID + Sbjct: 6 ILSKLVGTVFLLCMAFLLTSCESRKTIVNGLDEKEANEIVVFLSSKGIDAMKVQSTEGAG 65 Query: 79 NGSS------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132 G S ISV + +A L GLP S +F V + + I Sbjct: 66 GGGSKIVLWDISVSADKATQAMSILNQSGLPRRKPQSLLGIFSNV-GLVPSELQERIRYQ 124 Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKS-- 187 L +IA TI+ I G++ A V I P+ + + ASV ++ + Sbjct: 125 AGLAEQIASTIRKIDGVLDAEVQISFPEEDPLNPTGEKKGKIVASVYVKHSGVLDDPNSH 184 Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGK 215 I+ LVAA+V LD +VTV+ + Sbjct: 185 LVTKIKRLVAASVTGLDYDNVTVIGDRAR 213 >gi|28898464|ref|NP_798069.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|260365094|ref|ZP_05777665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus K5030] gi|260879510|ref|ZP_05891865.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AN-5034] gi|260895015|ref|ZP_05903511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus Peru-466] gi|28806682|dbj|BAC59953.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus RIMD 2210633] gi|308085933|gb|EFO35628.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus Peru-466] gi|308093438|gb|EFO43133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AN-5034] gi|308111628|gb|EFO49168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus K5030] Length = 248 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 16/226 (7%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSM 89 + L +A LY + + N + L + + + + V SS Sbjct: 9 LCLVLALFLVGCQTE---LYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLMVDSSQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + A L +G P ++ E+F K + + + V A E++ T+ I G+ Sbjct: 66 IAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 + ARVH+V+ D +ASV I+ S I+ LV ++ L+ + Sbjct: 125 LVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRI 184 Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 +V+ E + +S + ++ L L Sbjct: 185 SVV-------MVPSSEVRVATQSNQFKSILSVQVTKETANHLIGIL 223 >gi|153836290|ref|ZP_01988957.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ3810] gi|149750565|gb|EDM61310.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ3810] Length = 248 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 16/226 (7%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSM 89 + L +A LY + + N + L + + + + V SS Sbjct: 9 LCLVLALFLVGCQTE---LYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLMVDSSQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + A L +G P ++ E+F K + + + V A E++ T+ I G+ Sbjct: 66 IAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207 + ARVH+V+ D +ASV I+ S I+ LV ++ L+ + Sbjct: 125 LVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRI 184 Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 +V+ E + +S + ++ L L Sbjct: 185 SVV-------MVPSSEVRVTTQSNQFKSILSVQVTKETANHLIGIL 223 >gi|84502358|ref|ZP_01000494.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597] gi|84389170|gb|EAQ01967.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597] Length = 246 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 22/244 (9%) Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K +E NYEI T + +++R+S+AV+VN + G A + + + L +N+ Sbjct: 1 KTDEVVNYEIGNTQSETVREPGEIQRISVAVLVNGIYNIQDNGEVAYEERSEEELQRLNQ 60 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V AA G + +RGD++++ S+ F++ + V SF+ IL + ++ A+ L Sbjct: 61 LVQAAIGFDEQRGDSVSVDSLRFMDYSMDVGEPVSTSFVQILKDNMMAILRAVFALAVIA 120 Query: 451 LVTFLGLHALR-RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 + G+ L R + + ++ + L + Q Sbjct: 121 AILVFGVRPLVARALPERTEGEDQSDVPALPGGEAQAEGELAADGDRAPQGLPAPQQARP 180 Query: 510 ---------------------SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 +N V K + ++E + K+++ Sbjct: 181 RRAGSGGAVSGTVLEPISMAGPDDLVTLGAVNGGVHKGWINTVSGLVEHQPDDSLKVVKT 240 Query: 549 WARS 552 W Sbjct: 241 WLAE 244 >gi|238918870|ref|YP_002932384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family, [Edwardsiella ictaluri 93-146] gi|84663079|gb|ABC60061.1| EsaJ [Edwardsiella ictaluri 93-146] gi|238868438|gb|ACR68149.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family, putative [Edwardsiella ictaluri 93-146] Length = 243 Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY KL+ + N++ L I R+ +G ++ V A L GLP + Sbjct: 23 LYSKLDEKEANQMMALLIYNKIPADKRMEKDGVTLLVDQDRFVDAVEVLRQNGLPRPQTV 82 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ELF + +E +I + + S+ G++ A V + P + Sbjct: 83 TMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLSSMDGVINAEVSVAEP-RAIVGEAP 140 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 +A+V I+ + EA IR L+ +P L ++V Sbjct: 141 PLASAAVFIKYSPDVNLPAREAEIRALINNGIPGLAPDRISVT 183 >gi|269138213|ref|YP_003294913.1| putative type III secretion system apparatus lipoprotein [Edwardsiella tarda EIB202] gi|61743038|gb|AAX55258.1| EsaJ [Edwardsiella tarda] gi|62199640|gb|AAX76915.1| EsaJ [Edwardsiella tarda] gi|267983873|gb|ACY83702.1| putative type III secretion system apparatus lipoprotein [Edwardsiella tarda EIB202] gi|304558256|gb|ADM40920.1| EsaJ [Edwardsiella tarda FL6-60] Length = 243 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 5/163 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY KL+ + N++ L NI R+ G ++ V A L GLP + Sbjct: 23 LYSKLDEKEANQMMALLIYNNIPADKRVEKEGVTLLVERERFVDAVEVLRQNGLPRRKTV 82 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ELF + +E +I + + S+ G++ A V + P + Sbjct: 83 TMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLGSMDGVINAEVSVAEP-RVIVGEAP 140 Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 + +A+V I+ + EA IR L+ +P L ++V Sbjct: 141 PQASAAVFIKYSPEINLPAREAEIRALIHNGIPGLAPDRISVT 183 >gi|153003620|ref|YP_001377945.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. Fw109-5] gi|152027193|gb|ABS24961.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. Fw109-5] Length = 239 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 10/184 (5%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS-----ISVPSSMV 90 + ++ + L L+ + N + VAL E + S ++V + Sbjct: 7 LLVLATALSGCAEEELLHGLDEAQANEVLVALDEGGLPATKRREEGSDGQWMVAVGAHDA 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A LA + LP + E+F K S T + + AL GE++R+++SI G+V Sbjct: 67 ARAHRVLAERELPRARPPGFGEVFGK-GSMVPTPTEEHALYLHALAGELSRSVESIDGVV 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE----AIRHLVAAAVPNLDMGD 206 ARVH+ +P R ++ P+ + IR LVA A L+ G Sbjct: 126 EARVHLGLPQPDPLRPGDVPAPRGAVLVKCRPAACDAVRALEAGIRALVAGAAGGLEPGA 185 Query: 207 VTVL 210 ++V+ Sbjct: 186 ISVV 189 >gi|91224456|ref|ZP_01259718.1| putative type III secretion lipoprotein [Vibrio alginolyticus 12G01] gi|91190798|gb|EAS77065.1| putative type III secretion lipoprotein [Vibrio alginolyticus 12G01] gi|262284512|gb|ACY41049.1| VscJ [Vibrio alginolyticus] Length = 247 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 14/225 (6%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 +F+ F+ LY + + N + L + + + V SS + Sbjct: 7 AVFIMLTLFLVGCQ-TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L +G P ++ E+F K + + + V A E++ T+ I G++ Sbjct: 66 AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124 Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+V+ D +ASV I+ S I+ LV ++ L+ ++ Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184 Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 V+ E + ++ + ++ L A L Sbjct: 185 VV-------MVPSSEVRVATQNNQFKSILSVQVTKETANNLIAIL 222 >gi|254228230|ref|ZP_04921659.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio sp. Ex25] gi|262394115|ref|YP_003285969.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25] gi|151939303|gb|EDN58132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio sp. Ex25] gi|262337709|gb|ACY51504.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25] Length = 247 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 7/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 +F+ F+ LY + + N + L + + + V SS + Sbjct: 7 AVFIMLTLFLVGCQ-TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L +G P ++ E+F K + + + V A E++ T+ I G++ Sbjct: 66 AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124 Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+V+ D +ASV I+ S I+ LV ++ L+ ++ Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184 Query: 209 VL 210 V+ Sbjct: 185 VV 186 >gi|110632466|ref|YP_672674.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Mesorhizobium sp. BNC1] gi|110283450|gb|ABG61509.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Chelativorans sp. BNC1] Length = 266 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 6/181 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVP 86 L ++L A F+++ LY L + N + L E +ID + ++ V Sbjct: 19 LGAVLLAFALCAFLSACK-VPLYSGLSEQEANDMLGKLLEYDIDATKQADKDNYITLLVD 77 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 + G+A L + GLP + ++F + + + AL E+++ + SI Sbjct: 78 EAQFGQAVDLLKSFGLPRPQFETIGKVF-TGDGLVTSPVKEWARLNFALSQELSKMVSSI 136 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMG 205 G+V A V I P + P+ASV+ I + + IR LVA ++ N+ Sbjct: 137 PGVVLAEVQIANPRKTTPFDEVPPPSASVLAIVNRSAVTAELVPRIRQLVAHSIENVQYE 196 Query: 206 D 206 Sbjct: 197 K 197 >gi|296103639|ref|YP_003613785.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058098|gb|ADF62836.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 268 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 93/291 (31%), Gaps = 46/291 (15%) Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---------------------PL 322 + R + +++ + N P Sbjct: 1 MAIRSRQASLSEQGNSRGASGVPGALSNTPPAPATAPLTQPLNTPADDKKEKTTSNSANR 60 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 + ++ +E +N+E++ I T + +++RLS+AVV+N E + Sbjct: 61 EPAQPYNNRSDETTNFEVDRTLIHTKSNAGRIQRLSVAVVINHLPQGEE---GKPGPISE 117 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442 + L IN +V A G N+ RGD++ I + F + D R +A ++ Sbjct: 118 AELTRINALVKEAIGFNASRGDSVNILNSAFNG--VVEEPVPPFWEQD---RFYALLMAI 172 Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502 +LV ++ + ++ + + M + + Sbjct: 173 ARYLVIAIIAWVMWRKLVQPAWIRH-----------------QETTLRRLEMEKEAREEE 215 Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + N ++ + +L + E A ++R+W E Sbjct: 216 IAAKKRAAEKINRDRAQQRVDTELNGQQLRELAEQEPRVIALVIRQWMSKE 266 >gi|16082747|ref|NP_395193.1| needle complex inner membrane lipoprotein [Yersinia pestis CO92] gi|31795324|ref|NP_857723.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM] gi|31795467|ref|NP_857918.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM] gi|45478525|ref|NP_995352.1| putative type III secretion lipoprotein YscJ [Yersinia pestis biovar Microtus str. 91001] gi|51593928|ref|YP_068495.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia pseudotuberculosis IP 32953] gi|108793648|ref|YP_636797.1| type III secretion lipoprotein [Yersinia pestis Antiqua] gi|145597125|ref|YP_001154589.1| type III secretion lipoprotein [Yersinia pestis Pestoides F] gi|149192680|ref|YP_001293912.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125] gi|162417757|ref|YP_001604492.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Angola] gi|165927768|ref|ZP_02223600.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165940079|ref|ZP_02228613.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. IP275] gi|166011735|ref|ZP_02232633.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166214472|ref|ZP_02240507.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. B42003004] gi|167401937|ref|ZP_02307423.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422389|ref|ZP_02314142.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422456|ref|ZP_02314209.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422890|ref|ZP_02314643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426845|ref|ZP_02318598.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897504|ref|YP_001874615.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis PB1/+] gi|229896875|ref|ZP_04512035.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides A] gi|229900230|ref|ZP_04515366.1| putative type III secretion lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|270491089|ref|ZP_06208161.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|294496851|ref|YP_003560548.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003] gi|322836586|ref|YP_004210082.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java 9] gi|57015226|sp|P69972|YSCJ_YERPE RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor gi|57015227|sp|P69973|YSCJ_YERPS RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; AltName: Full=Low calcium response locus protein KA; Flags: Precursor gi|155466|gb|AAA27651.1| lcrKa [Yersinia pseudotuberculosis] gi|2996284|gb|AAC62607.1| Yop proteins translocation lipoprotein J [Yersinia pestis KIM 10] gi|3822055|gb|AAC69775.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832479|emb|CAB54936.1| putative type III secretion lipoprotein [Yersinia pestis CO92] gi|45357147|gb|AAS58543.1| putative type III secretion lipoprotein YscJ [Yersinia pestis biovar Microtus str. 91001] gi|51591625|emb|CAF25429.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia pseudotuberculosis IP 32953] gi|108782195|gb|ABG16250.1| type III secretion lipoprotein [Yersinia pestis Antiqua] gi|145212893|gb|ABP42299.1| type III secretion lipoprotein [Yersinia pestis Pestoides F] gi|148872338|gb|ABR14828.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125] gi|162354777|gb|ABX88724.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Angola] gi|165911989|gb|EDR30632.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. IP275] gi|165920204|gb|EDR37505.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. F1991016] gi|165989342|gb|EDR41643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. E1979001] gi|166204365|gb|EDR48845.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. B42003004] gi|166958180|gb|EDR55201.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958626|gb|EDR55647.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958693|gb|EDR55714.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048665|gb|EDR60073.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054144|gb|EDR63971.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700530|gb|ACC91158.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis PB1/+] gi|229686750|gb|EEO78830.1| putative type III secretion lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229700146|gb|EEO88185.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides A] gi|262363863|gb|ACY60583.1| needle complex inner membrane lipoprotein [Yersinia pestis D106004] gi|262364019|gb|ACY64356.1| needle complex inner membrane lipoprotein [Yersinia pestis D182038] gi|270334832|gb|EFA45611.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|294352439|gb|ADE66496.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003] gi|317374463|gb|ADV16638.1| type III secretion bridge between inner and outermembrane lipoprotein [Yersinia pestis] gi|320017494|gb|ADW01065.1| putative type III secretion lipoprotein [Yersinia pestis biovar Medievalis str. Harbin 35] gi|321161360|gb|ADW67066.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java 9] Length = 244 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 7/179 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKA 93 + F+ +LY + + N + L + + + + V S V +A Sbjct: 10 LILILFLTGCK-VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 L +G P S ++ ++F K + + A EI+RT+ I G++ AR Sbjct: 69 IDILKRKGYPHESFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 VH+V+P + + K G +ASV I+ + + I+ LV ++ L ++V+ Sbjct: 128 VHVVLPEEQNNKGKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186 >gi|118592619|ref|ZP_01550009.1| Type III secretion component protein SctJ [Stappia aggregata IAM 12614] gi|118434670|gb|EAV41321.1| Type III secretion component protein SctJ [Stappia aggregata IAM 12614] Length = 239 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 5/160 (3%) Query: 55 LEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 + D N + L I D+G S+ V + + A L+ G P + S Sbjct: 1 MSEQDANGMLSVLMANGISVEKRYDGDDGVSLLVDEADLAPAIGILSENGFPRTERESIG 60 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 +F K + + F + + + AL E++ T+ I G++ ARVH+V+P+ ++ Sbjct: 61 SVFQK-SGIMSSPFEERVRYIHALGEEVSGTLNEIDGVLMARVHVVLPEKPELGEVIVPS 119 Query: 172 TASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 +A+V I+ IR LV+ ++ ++ VTV+ Sbjct: 120 SAAVFIKHSKNVDLDFITPQIRRLVSNSIQGVEYDSVTVV 159 >gi|304311662|ref|YP_003811260.1| Type III secretion pathway protein [gamma proteobacterium HdN1] gi|301797395|emb|CBL45615.1| Type III secretion pathway protein [gamma proteobacterium HdN1] Length = 244 Score = 113 bits (283), Expect = 7e-23, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 7/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSM 89 + + +++ LY +LE VN + L I ++S +G + + VP + Sbjct: 8 VALVVCFLLLSACGGSELYSELEEHQVNEMQALLINVGIPAEKKLSSDGKAWRLLVPKAY 67 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + ++ L+ GLP + S ++F K F + + V A+ E++ TI + G+ Sbjct: 68 IPESMTLLSEHGLPRQTLPSIADVF-KKEGFVSSPVEEHARYVYAISQELSNTIMQLDGV 126 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD-MGDV 207 +ARVH +P + K + SV+I E I+ + + L + V Sbjct: 127 ASARVHAALPARAALEKKQQSASVSVVIIEKPGFDLSKFETDIKAIATDGIEGLSDINRV 186 Query: 208 TV 209 TV Sbjct: 187 TV 188 >gi|269963158|ref|ZP_06177493.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832122|gb|EEZ86246.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 247 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 11/186 (5%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVP 86 ++L + LY + + N + L + + + V Sbjct: 7 AACMLLVLFLV-----GCQTELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVD 61 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 ++ + A L +G P ++ E+F K + + + + A E++ T+ I Sbjct: 62 NAQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQI 120 Query: 147 SGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 G++ ARVH+V+ D +ASV I+ S I+ LV ++ L+ Sbjct: 121 DGVLVARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNY 180 Query: 205 GDVTVL 210 ++V+ Sbjct: 181 DRISVV 186 >gi|83647792|ref|YP_436227.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] gi|83635835|gb|ABC31802.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis KCTC 2396] Length = 251 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 8/168 (4%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS------DNGSSISVPSSMVGKARIHLAAQGL 102 LY L + N + L + + D + +P V +A L QG Sbjct: 23 TELYSGLSQQEGNEMYAILRSTGFNVEMEVLGAGKDQNVRLKLPEQQVARAISVLQRQGY 82 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P + E+F K + ++ + A+ E++ T+ +I G++ ARVH+VM + Sbjct: 83 PKQHFATMGEIFAKD-GLISSPTEEKARFIYAISQELSHTLSNIDGVLVARVHVVMQEGD 141 Query: 163 SFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209 F K TASV I+ + + ++ I+ LV+ ++ LD V+V Sbjct: 142 KFDKNPKPSTASVFIKYVEDAPIETLTPKIKALVSNSILGLDYDQVSV 189 >gi|163802017|ref|ZP_02195913.1| putative type III secretion lipoprotein [Vibrio sp. AND4] gi|159174158|gb|EDP58966.1| putative type III secretion lipoprotein [Vibrio sp. AND4] Length = 247 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 14/225 (6%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 L M F+ LY ++ + N + L + + + V ++ + Sbjct: 7 ALGMLLVVFLVGCQ-TELYTGVDQQEGNEMLSILLSEGVVATKEPDKDNTVKLLVDNAQI 65 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P ++ E+F K + + + + A E++ T+ I G++ Sbjct: 66 AFAVDALKRNGYPKEQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQIDGVL 124 Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+V+ D +ASV I+ + I+ LV ++ L+ ++ Sbjct: 125 VARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDAYVPQIKLLVNHSIEGLNYDRIS 184 Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 V+ E I + + ++ + L A L Sbjct: 185 VV-------MVPSSEARITSQGSQFESILSIQVTKDTASHLIAIL 222 >gi|238787467|ref|ZP_04631265.1| Type III secretion system apparatus lipoprotein [Yersinia frederiksenii ATCC 33641] gi|238724254|gb|EEQ15896.1| Type III secretion system apparatus lipoprotein [Yersinia frederiksenii ATCC 33641] Length = 240 Score = 113 bits (282), Expect = 9e-23, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 7/182 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSM 89 ++ + F ++ LY L + N++ L I G ++ SV S Sbjct: 4 MIALLLIVFSLSGCG-IALYSGLSEGEANQMLALLMLHQIKAEKQPEKGGTVGLSVDKSQ 62 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P S ELF + ++ V E ++ + + G+ Sbjct: 63 FINAVELLRQHGFPRQRFTSVDELFPPNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 121 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208 + A V I MP K ASV I+ S ++ I++L+ +P +D ++ Sbjct: 122 IRADVTIAMPAPT-DGKSSVPHAASVFIKYSPEVNLLSYQSQIKNLIRDGIPGIDYSQIS 180 Query: 209 VL 210 V+ Sbjct: 181 VV 182 >gi|10955579|ref|NP_052420.1| hypothetical protein pYVe227_p43 [Yersinia enterocolitica] gi|28373017|ref|NP_783695.1| hypothetical protein pYVa12790_p42 [Yersinia enterocolitica] gi|32470307|ref|NP_863542.1| hypothetical protein pYVe8081_p37 [Yersinia enterocolitica] gi|122815831|ref|YP_001004097.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163601|ref|YP_004424943.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|267571|sp|Q01251|YSCJ_YEREN RecName: Full=Yop proteins translocation lipoprotein J; AltName: Full=Lipoprotein ylpB; Flags: Precursor gi|14579365|gb|AAK69242.1|AF336309_37 YscJ [Yersinia enterocolitica] gi|155559|gb|AAC37027.1| yscJ [Yersinia enterocolitica] gi|4324366|gb|AAD16843.1| YscJ [Yersinia enterocolitica W22703] gi|28302112|gb|AAN37545.2| YscJ [Yersinia enterocolitica] gi|121663705|emb|CAL10067.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|325667831|gb|ADZ44474.1| type III secretion lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 244 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 7/179 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKA 93 + F+ +LY + + N + L + + + + V S V +A Sbjct: 10 LILILFLTGCK-VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 L +G P S ++ ++F K + + A EI+RT+ I G++ AR Sbjct: 69 IDILKRKGYPHESFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 VH+V+P + + K G +ASV I+ + + I+ LV ++ L ++V+ Sbjct: 128 VHVVLPEEQNNKGKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186 >gi|238793326|ref|ZP_04636952.1| Type III secretion system apparatus lipoprotein [Yersinia intermedia ATCC 29909] gi|238727295|gb|EEQ18823.1| Type III secretion system apparatus lipoprotein [Yersinia intermedia ATCC 29909] Length = 233 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 7/202 (3%) Query: 38 AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSMVGKAR 94 ++ + LY L + N++ L I G ++ SV S A Sbjct: 2 LVVVSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVGLSVDKSQFINAV 60 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 L G P + LF + ++ V E ++ + + G++ A V Sbjct: 61 ELLRQNGFPRQKFTTVDTLFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIHADV 119 Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDST 213 I MP K ASV I+ +S I++L+ +P +D ++V+ Sbjct: 120 TIAMPAPT-DGKSSVPHAASVFIKYSPEVNLQSYQPQIKNLIRDGIPGIDYSQISVVMQP 178 Query: 214 GKLLTANEMERNILGKSLSIVQ 235 LS+ Sbjct: 179 ANYRFIAAEPHEHAEAQLSLQW 200 >gi|312912394|dbj|BAJ36368.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 249 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|695778|emb|CAA55109.1| lcrKa [Yersinia pestis] Length = 236 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 7/179 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKA 93 + F+ +LY + + N + L + + + + V S V +A Sbjct: 2 LILILFLTGCK-VDLYTGISQKEGNEMLALLPQEGLSADKEPDKDGKIKLLVEESDVAQA 60 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 L +G P S ++ ++F K + + A EI+RT+ I G++ AR Sbjct: 61 IDILKRKGYPHESFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVAR 119 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 VH+V+P + + K G +ASV I+ + + I+ LV ++ L ++V+ Sbjct: 120 VHVVLPEEQNNKGKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 178 >gi|46445839|ref|YP_007204.1| putative type III secretion protein SctJ [Candidatus Protochlamydia amoebophila UWE25] gi|46399480|emb|CAF22929.1| putative type III secretion protein SctJ [Candidatus Protochlamydia amoebophila UWE25] Length = 337 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 17/201 (8%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR----ISDNGS------ 81 +L + + LE + N I V LS I+ +S+ G Sbjct: 19 FFLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGINANKVQAVSEGGGGAKGVL 78 Query: 82 -SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 +ISV +A L GLP + +F + + ++I L +IA Sbjct: 79 WNISVEEGQANEAMALLNQVGLPRRRGQNLLGIFANTS-LVPSGMQEKIRYQAGLAEQIA 137 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAINPSVYKS---AEAIRHLV 195 TI+ I G++ A V I PD + TASV ++ + I+ LV Sbjct: 138 STIRKIDGVLDADVQISFPDEDPLNPNAPKQKITASVYVKHNGVLDDPNAHLITRIKRLV 197 Query: 196 AAAVPNLDMGDVTVLDSTGKL 216 A ++ LD VTV+ + Sbjct: 198 AGSINGLDYDYVTVIGDKARY 218 >gi|167589321|ref|ZP_02381709.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ubonensis Bu] Length = 264 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISD--------NGSSISVPSSMVGKARIHLAAQGL 102 LY L +D N++ L +A ID + + +SV + A L A GL Sbjct: 36 LYSGLSEADANQMIAVLGDAGIDASKDNDARDTSDRDAWQVSVADGDLHAALTVLRANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 96 PKPRHASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIRPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|45440272|ref|NP_991811.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|108810010|ref|YP_653926.1| type III secretion system apparatus lipoprotein [Yersinia pestis Antiqua] gi|108813566|ref|YP_649333.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|145600955|ref|YP_001165031.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides F] gi|150260689|ref|ZP_01917417.1| type III secretion system apparatus lipoprotein [Yersinia pestis CA88-4125] gi|162418417|ref|YP_001608235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pestis Angola] gi|165926703|ref|ZP_02222535.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165936453|ref|ZP_02225021.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. IP275] gi|166010454|ref|ZP_02231352.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213895|ref|ZP_02239930.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402484|ref|ZP_02307939.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419313|ref|ZP_02311066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167469434|ref|ZP_02334138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis FV-1] gi|218927469|ref|YP_002345344.1| type III secretion system apparatus lipoprotein [Yersinia pestis CO92] gi|229836517|ref|ZP_04456683.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides A] gi|229840125|ref|ZP_04460284.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842206|ref|ZP_04462361.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229904054|ref|ZP_04519167.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|294502335|ref|YP_003566397.1| type III secretion system apparatus lipoprotein [Yersinia pestis Z176003] gi|45435128|gb|AAS60688.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Microtus str. 91001] gi|108777214|gb|ABG19733.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|108781923|gb|ABG15981.1| type III secretion system apparatus lipoprotein [Yersinia pestis Antiqua] gi|115346080|emb|CAL18948.1| type III secretion system apparatus lipoprotein [Yersinia pestis CO92] gi|145212651|gb|ABP42058.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides F] gi|149290097|gb|EDM40174.1| type III secretion system apparatus lipoprotein [Yersinia pestis CA88-4125] gi|162351232|gb|ABX85180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis Angola] gi|165915569|gb|EDR34178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. IP275] gi|165921326|gb|EDR38550.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990544|gb|EDR42845.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204870|gb|EDR49350.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963307|gb|EDR59328.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048134|gb|EDR59542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229679824|gb|EEO75927.1| type III secretion system apparatus lipoprotein [Yersinia pestis Nepal516] gi|229690516|gb|EEO82570.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. India 195] gi|229696491|gb|EEO86538.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706201|gb|EEO92209.1| type III secretion system apparatus lipoprotein [Yersinia pestis Pestoides A] gi|262360415|gb|ACY57136.1| type III secretion system apparatus lipoprotein [Yersinia pestis D106004] gi|262364365|gb|ACY60922.1| type III secretion system apparatus lipoprotein [Yersinia pestis D182038] gi|294352794|gb|ADE63135.1| type III secretion system apparatus lipoprotein [Yersinia pestis Z176003] gi|320013873|gb|ADV97444.1| type III secretion system apparatus lipoprotein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 243 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 13/240 (5%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89 ++ + ++ + LY L + N++ L I+ +I +G ++V Sbjct: 7 MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P + ELF + ++ V E ++ + + G+ Sbjct: 66 FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208 + A V + MP M K TASV I+ +S ++ I+ LV AVP +D ++ Sbjct: 125 IHADVTVAMP-MSVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183 Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 V+ + + + + + +GV V+ + Sbjct: 184 VV------MQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGW 237 >gi|322615106|gb|EFY12029.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619948|gb|EFY16821.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622259|gb|EFY19104.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627781|gb|EFY24571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322636635|gb|EFY33338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641172|gb|EFY37814.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644893|gb|EFY41426.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655844|gb|EFY52146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660169|gb|EFY56408.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665264|gb|EFY61452.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669521|gb|EFY65669.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673447|gb|EFY69549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677375|gb|EFY73439.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679962|gb|EFY76001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687434|gb|EFY83406.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194114|gb|EFZ79313.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198594|gb|EFZ83695.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202920|gb|EFZ87955.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208640|gb|EFZ93578.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217618|gb|EGA02333.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218966|gb|EGA03476.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323229419|gb|EGA13542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232642|gb|EGA16738.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240320|gb|EGA24364.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242691|gb|EGA26712.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245903|gb|EGA29891.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252467|gb|EGA36314.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255110|gb|EGA38894.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260049|gb|EGA43674.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267187|gb|EGA50672.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271490|gb|EGA54911.1| type III secretion system lipoprotein SsaJ [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 249 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|94986985|ref|YP_594918.1| LscJ [Lawsonia intracellularis PHE/MN1-00] gi|94731234|emb|CAJ54597.1| LscJ [Lawsonia intracellularis PHE/MN1-00] Length = 290 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107 +Y L VN + L ID S G S+ V + A L LP + Sbjct: 45 VYKGLTEDQVNEMVATLIYRGIDVEKSPGGKEGFSLLVAEEQLISALEILKKNALPRENY 104 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S E+F + + A+ E+A T I G++ RVH+V Sbjct: 105 VSLGEVF-SGQGMISSQSEERARMAYAISQELANTFSRIDGVLTTRVHVVPGYTDQAVDS 163 Query: 168 GARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210 P+ + IR S +IR + A ++P+L+ +V+ Sbjct: 164 KILPSMGIFIRHTPDSPVVNMLPSIREVAAKSLPDLEYDRTSVM 207 >gi|46562142|ref|YP_009157.1| type III secretion lipoprotein [Desulfovibrio vulgaris str. Hildenborough] gi|46447679|gb|AAS94345.1| type III secretion lipoprotein [Desulfovibrio vulgaris str. Hildenborough] gi|311235505|gb|ADP88358.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris RCH1] Length = 271 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L N + L + I+ NG ++SV V +A L LP Sbjct: 34 LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S ++F + + ++ A+ E+A T I G++ AR H+V+ Sbjct: 94 QSLGKVF-SGDGMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152 Query: 168 GARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V +R S IR + A AVP LD V+V+ Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196 >gi|312883870|ref|ZP_07743587.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368328|gb|EFP95863.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC BAA-2122] Length = 247 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY ++ + N + L + + + V ++ + A L G P Sbjct: 23 LYTGVDQKEGNEMLSILLSEGVVASKEPDKDNTVKLMVDNAQIAFAVDVLKRNGYPREQF 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++ ++F K + + + + A E++ T+ I G++ ARVH+V+ + Sbjct: 83 STLKDVFPKDD-LISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLEEEELRPGE 141 Query: 168 GA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ S I+ LV ++ L+ ++V+ Sbjct: 142 RPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV 186 >gi|153832501|ref|ZP_01985168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio harveyi HY01] gi|156973996|ref|YP_001444903.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116] gi|148871296|gb|EDL70168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio harveyi HY01] gi|156525590|gb|ABU70676.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116] Length = 252 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 11/186 (5%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVP 86 V ++L + LY + + N + L + + + V Sbjct: 12 AVSMLLVLFLV-----GCQTELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVD 66 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 ++ + A L +G P ++ E+F K + + + + A E++ T+ I Sbjct: 67 NAQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQI 125 Query: 147 SGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 G++ ARVH+V+ D +ASV I+ S I+ LV ++ L+ Sbjct: 126 DGVLVARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNY 185 Query: 205 GDVTVL 210 ++V+ Sbjct: 186 DRISVV 191 >gi|84785890|gb|ABC62084.1| secretion and cellular translocation protein J [Chlamydophila psittaci] Length = 330 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 20/220 (9%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRIS-----DNGSS- 82 + + F+ F S + +L V L + N I V L + + G + Sbjct: 6 ISCCLFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAS 65 Query: 83 ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 ISVP+ + +A L GLP S +LF K + ++I L Sbjct: 66 SXQLWDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLS 124 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193 ++A TI+ + GIV A V I + + TASV I+ + I+ Sbjct: 125 EQMASTIRKMDGIVDASVQISF---TTEAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 LVA+AVP L +V+V+ L + Sbjct: 182 LVASAVPGLSTENVSVISDRASYSDITINGPWGLTDEIDY 221 >gi|332159951|ref|YP_004296528.1| type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607497|emb|CBY28995.1| secretion system apparatus SsaJ [Yersinia enterocolitica subsp. palearctica Y11] gi|325664181|gb|ADZ40825.1| Type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862423|emb|CBX72582.1| secretion system apparatus lipoprotein ssaJ [Yersinia enterocolitica W22703] Length = 243 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 7/182 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSM 89 +M + ++ + LY L + N++ L I +++V S Sbjct: 7 LMALLLVVMSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVALNVDKSQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P S ELF + ++ V E ++ + + G+ Sbjct: 66 FINAVELLRQHGFPRQRFASVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVT 208 + A V I MP K ASV I+ S I++L+ +P +D ++ Sbjct: 125 IQADVTIAMPAPT-DGKSSVPHAASVFIKYSPEVNLLSYQPQIKNLIRDGIPGIDFSQIS 183 Query: 209 VL 210 V+ Sbjct: 184 VV 185 >gi|313106063|ref|ZP_07792321.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 39016] gi|310878823|gb|EFQ37417.1| Flagella M-ring outer membrane protein precursor [Pseudomonas aeruginosa 39016] Length = 185 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 73/196 (37%), Gaps = 12/196 (6%) Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418 V+ ++ ++ G + Q LA ++V + G ++ RGD++++ + F Q Sbjct: 2 AVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINAPFAPAQA 61 Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478 ++ F ++ ++ ++ L++ F L + K GG Sbjct: 62 EEIDSIPF----YSQPWFWDIVKQVLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGG 117 Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538 + + G + +D +++ + + + + +++ + Sbjct: 118 RDGDLALGESGLEGSLADDRVSIGGPSSILLPSP--------TEGYDAQLNAIKNLVAQD 169 Query: 539 EERFAKILRKWARSEI 554 R A+++++W ++ Sbjct: 170 PGRVAQVVKEWINADE 185 >gi|269967253|ref|ZP_06181317.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B] gi|269828109|gb|EEZ82379.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B] Length = 237 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 13/210 (6%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105 LY + + N + L + + + V SS + A L +G P Sbjct: 11 TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQIAFAVDALKRKGYPRE 70 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 ++ E+F K + + + V A E++ T+ I G++ ARVH+V+ D Sbjct: 71 QFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQDLRP 129 Query: 166 KIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 +ASV I+ S I+ LV ++ L+ ++V+ E Sbjct: 130 GERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV-------MVPSSE 182 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFL 253 + ++ + ++ L A L Sbjct: 183 VRVATQNNQFKSILSVQVTKETANNLIAIL 212 >gi|297620340|ref|YP_003708477.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU 86-1044] gi|297375641|gb|ADI37471.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU 86-1044] Length = 341 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 70/219 (31%), Gaps = 18/219 (8%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG----------- 80 + + ++ + L+ + N I V LS +D + Sbjct: 13 ILFIVISLSLLTGCEKRKTIVNGLDEREANEIVVFLSNEGVDAAKVKSAEGSGGGGSKIA 72 Query: 81 -SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139 ISVP +A L GLP S S +F + + I L +I Sbjct: 73 LWDISVPEEQAIEAMSMLNRAGLPKRSGQSLLGIF-SNTGLVPSEMQERIRYQAGLAEQI 131 Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVYKS---AEAIRHL 194 A TI+ G++ A V I P+ TASV ++ + I+ L Sbjct: 132 ASTIRKFDGVLDAEVQISFPEEDPLNPGQKKGEITASVYVKHSGVLDDPNTHAITKIKRL 191 Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 V AV L +VTV+ + + + Sbjct: 192 VTGAVTGLKYDNVTVIADRARFADFPIGLQRARDEDKEY 230 >gi|51594674|ref|YP_068865.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ [Yersinia pseudotuberculosis IP 32953] gi|153948722|ref|YP_001402777.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis IP 31758] gi|170026123|ref|YP_001722628.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis YPIII] gi|186893677|ref|YP_001870789.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia pseudotuberculosis PB1/+] gi|51587956|emb|CAH19559.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ [Yersinia pseudotuberculosis IP 32953] gi|152960217|gb|ABS47678.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis IP 31758] gi|169752657|gb|ACA70175.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis YPIII] gi|186696703|gb|ACC87332.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pseudotuberculosis PB1/+] Length = 243 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 13/240 (5%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89 ++ + ++ + LY L + N++ L I+ +I +G ++V Sbjct: 7 MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P + ELF + ++ V E ++ + + G+ Sbjct: 66 FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208 + A V + MP M K TASV I+ +S ++ I+ LV AVP +D ++ Sbjct: 125 IHADVTVAMP-MSVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183 Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 V+ + + + + + +GV V+ + Sbjct: 184 VV------MQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGW 237 >gi|329943273|ref|ZP_08292047.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10] gi|332287851|ref|YP_004422752.1| putative type III secretion system protein [Chlamydophila psittaci 6BC] gi|313848423|emb|CBY17427.1| putative type III export protein [Chlamydophila psittaci RD1] gi|325506893|gb|ADZ18531.1| putative type III secretion system protein [Chlamydophila psittaci 6BC] gi|328814820|gb|EGF84810.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10] gi|328915113|gb|AEB55946.1| type III secretion protein SctJ [Chlamydophila psittaci 6BC] Length = 330 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 20/220 (9%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRIS-----DNGSS- 82 + + F+ F S + +L V L + N I V L + + G + Sbjct: 6 ISCCLFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAS 65 Query: 83 ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 ISVP+ + +A L GLP S +LF K + ++I L Sbjct: 66 SEQLWDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLS 124 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193 ++A TI+ + GIV A V I + + TASV I+ + I+ Sbjct: 125 EQMASTIRKMDGIVDASVQISF---TTEAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 LVA+AVP L +V+V+ L + Sbjct: 182 LVASAVPGLSTENVSVISDRASYSDITINGPWGLTDEIDY 221 >gi|227114184|ref|ZP_03827840.1| type III secretion protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 255 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89 +L + P L L +D N L I + G ++ + + Sbjct: 7 VFLLLIGLLTGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKN 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L A GLP S + E+F K + T + + AL E+ T+ I G+ Sbjct: 65 MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 + ARVH+V+P+ + + +A+V I+ E IR +VA+++P L D Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181 >gi|120586845|ref|YP_961190.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564259|gb|ABM30002.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Desulfovibrio vulgaris DP4] Length = 271 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L N + L + I+ NG ++SV V +A L LP Sbjct: 34 LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 S ++F + + ++ A+ E+A T I G++ AR H+V+ Sbjct: 94 QSLGKVF-SGDGMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152 Query: 168 GARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V +R S IR + A AVP LD V+V+ Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196 >gi|16764759|ref|NP_460374.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995043|ref|ZP_02576133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|3024642|sp|P74852|SSAJ_SALTY RecName: Full=Secretion system apparatus lipoprotein ssaJ; Flags: Precursor gi|1669745|emb|CAA70532.1| secretion system apparatus [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419930|gb|AAL20333.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327210|gb|EDZ13974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246615|emb|CBG24425.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993298|gb|ACY88183.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157944|emb|CBW17439.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323129681|gb|ADX17111.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988296|gb|AEF07279.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 249 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|168239293|ref|ZP_02664351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736650|ref|YP_002114422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712152|gb|ACF91373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288000|gb|EDY27387.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 249 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|62180000|ref|YP_216417.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168240922|ref|ZP_02665854.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263759|ref|ZP_02685732.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463181|ref|ZP_02697112.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446558|ref|YP_002040661.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449848|ref|YP_002045412.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197263539|ref|ZP_03163613.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389425|ref|ZP_03216036.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|62127633|gb|AAX65336.1| Secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194405221|gb|ACF65443.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408152|gb|ACF68371.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634338|gb|EDX52690.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197241794|gb|EDY24414.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199601870|gb|EDZ00416.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339355|gb|EDZ26119.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347655|gb|EDZ34286.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322714467|gb|EFZ06038.1| secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 249 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|16760502|ref|NP_456119.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141738|ref|NP_805080.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213022228|ref|ZP_03336675.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213584548|ref|ZP_03366374.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620458|ref|ZP_03373284.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647278|ref|ZP_03377331.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213859469|ref|ZP_03385173.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289826228|ref|ZP_06545340.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25512033|pir||AC0698 probable pathogenicity island lipoprotein ssaJ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502798|emb|CAD01956.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137366|gb|AAO68929.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 249 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IIFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|282890725|ref|ZP_06299245.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499318|gb|EFB41617.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 18/220 (8%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI---DFRISDNGSS--- 82 I+ + LF++ + + + D N I V L+ NI S+ G + Sbjct: 5 IVKIVYLFISLFLLTSCSSERTIVHGIREQDANEIIVFLNSKNIESTKVESSEGGGTGPQ 64 Query: 83 ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 I VP + A L +GLP S ++F +S + + I L Sbjct: 65 KAVFWDIQVPENKAMDAMSFLDEEGLPRKHQESLLDIFGS-SSLVPSETQERIRYQAGLA 123 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVY--KSAEA-IR 192 +IA TI+ I G++ A V I P+ + P TASV I+ + IR Sbjct: 124 QQIANTIKEIDGVIDANVMISFPEENPITGTTSGPITASVYIKHNGILDDPNSQLRSKIR 183 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232 LVAA+V L +VT++ + T + L Sbjct: 184 QLVAASVTGLKYDNVTIIGERAAI-TEQPFRMHSNALQLE 222 >gi|198244261|ref|YP_002215722.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938777|gb|ACH76110.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 249 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|56413620|ref|YP_150695.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551622|ref|ZP_02345376.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168822279|ref|ZP_02834279.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197362544|ref|YP_002142181.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207857085|ref|YP_002243736.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|56127877|gb|AAV77383.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094021|emb|CAR59517.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205323639|gb|EDZ11478.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205341290|gb|EDZ28054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708888|emb|CAR33218.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320086111|emb|CBY95885.1| Secretion system apparatus lipoprotein ssaJ Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 249 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|317486819|ref|ZP_07945635.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Bilophila wadsworthia 3_1_6] gi|316921982|gb|EFV43252.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Bilophila wadsworthia 3_1_6] Length = 269 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 5/166 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 +Y L + VN + L + I + G ++SV + ++ L LP + Sbjct: 32 VEVYRGLTEAQVNTMLSTLLKRGIRAEKTAAGKAGFTLSVDEDQLVQSLEILKENNLPRA 91 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 + ++F ++ ++ A+ E++ T I G++ ARVH+V+ Sbjct: 92 DYENLGKVF-SGQGMISSASEEQARMAYAISQELSDTFSRIDGVLTARVHVVLGGTDQAT 150 Query: 166 KIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210 P+A+V +R S IR L + AVP+LD V+V+ Sbjct: 151 DTRTLPSAAVFLRHTPDSPVVNLVAKIRELTSKAVPDLDYERVSVM 196 >gi|269105034|ref|ZP_06157729.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium damselae subsp. damselae CIP 102761] gi|268160669|gb|EEZ39167.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium damselae subsp. damselae CIP 102761] Length = 265 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 11/186 (5%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVP 86 V ++L + LY + + N + L + + + V Sbjct: 25 AVSMLLVLFLV-----GCQAELYTGVSQKEGNEMLSVLLSEGVVATKEPDKDNTVKLMVD 79 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 ++ + A L +G P ++ E+F K + + + + A E++ T+ I Sbjct: 80 NAQIAFAIDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSATLSQI 138 Query: 147 SGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 G++ ARVH+V+ D +ASV I+ S I+ LV ++ L+ Sbjct: 139 DGVLVARVHVVLKDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNY 198 Query: 205 GDVTVL 210 ++V+ Sbjct: 199 DRISVV 204 >gi|160875378|ref|YP_001554694.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Shewanella baltica OS195] gi|160860900|gb|ABX49434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS195] gi|315267578|gb|ADT94431.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS678] Length = 239 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 6/178 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGK 92 + F + +LY L + N++ L +ID + S+ + Sbjct: 8 ILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIDKDQFIN 67 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 A L G P + +LF + +E E ++ RT+ S+ G+++A Sbjct: 68 AVELLRQNGFPKPHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISA 126 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 RV I P S R+I +ASV I+ + + E I+ LV AVP L +++V Sbjct: 127 RVSIAEPAPDSGRQIALTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184 >gi|89897886|ref|YP_514996.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] gi|89331258|dbj|BAE80851.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] Length = 330 Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 20/216 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANI------DFRISDNGSS---- 82 + F+ F S +L V L + N I V L + S G S Sbjct: 10 LFFVMTLFCCTSCDSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGGSTEQL 69 Query: 83 --ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 I+VP++ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 WDIAVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197 TI+ + GIV A V I + + TASV I+ + I+ LVA+ Sbjct: 129 STIRKMDGIVDASVQISF---TTEAEENLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 AVP L +V+V+ L + Sbjct: 186 AVPGLSTENVSVISDRASYSDITINGPWGLSDEIDY 221 >gi|126174186|ref|YP_001050335.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Shewanella baltica OS155] gi|125997391|gb|ABN61466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS155] Length = 239 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 6/178 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGK 92 + F + +LY L + N++ L +ID + S+ + Sbjct: 8 ILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFIN 67 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 A L G P + +LF + +E E ++ RT+ S+ G+++A Sbjct: 68 AVELLRQNGFPKPHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISA 126 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 RV I P + R++ +ASV I+ + + E I+ LV AVP L +++V Sbjct: 127 RVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184 >gi|168233604|ref|ZP_02658662.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471741|ref|ZP_03077725.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197247506|ref|YP_002146633.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204927796|ref|ZP_03218997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194458105|gb|EDX46944.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211209|gb|ACH48606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204323138|gb|EDZ08334.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332334|gb|EDZ19098.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 249 Score = 110 bits (275), Expect = 6e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|269302618|gb|ACZ32718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Chlamydophila pneumoniae LPCoLN] Length = 335 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 70/195 (35%), Gaps = 19/195 (9%) Query: 54 KLEVSDVNRISVALSEANIDFRISDNG------------SSISVPSSMVGKARIHLAAQG 101 L D N I V L + + I+VPS+ + +A L G Sbjct: 31 GLPGRDANEIVVLLVSKGVAAQKLPQAAAATAGAATEQMWDIAVPSAQITEALAILNQAG 90 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +LF K + ++I L ++A TI+ + GIV A V I Sbjct: 91 LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTE 149 Query: 162 GSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 + TASV I+ + I+ L+A+AVP L +V+V+ Sbjct: 150 N---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLIASAVPGLVPENVSVVSDRAAYSD 206 Query: 219 ANEMERNILGKSLSI 233 L + + Sbjct: 207 ITINGPWGLTEEIDY 221 >gi|34498043|ref|NP_902258.1| type III secretion system apparatus lipoprotein [Chromobacterium violaceum ATCC 12472] gi|34103898|gb|AAQ60258.1| type III secretion system apparatus lipoprotein [Chromobacterium violaceum ATCC 12472] Length = 241 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 9/180 (5%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVG 91 L + LY L + N++ L N+D I + ++ V Sbjct: 10 LLILMSLMGCKVD---LYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRVEKEQFT 66 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 A L GLPS + + +LF + ++ E + + ++ + G+++ Sbjct: 67 DAVEVLRQHGLPSKRTETMADLFPSGQ-LVTSPAQEQAKIGYLKEQLLEKMLRGMDGVIS 125 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 A+V I + R+ P+ASV I+ +S E I+ L+ VPNL +++V+ Sbjct: 126 AQVSIA-ESVSQNRREAPAPSASVFIKYSPGINMQSRETDIKRLIHTGVPNLRSENISVV 184 >gi|182441001|dbj|BAG24126.1| HrcJ [Pseudomonas cichorii] Length = 263 Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID + + G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVKVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206 +A+V I+ S IR +VA+++P + D Sbjct: 146 QPASAAVFIKYRPDLEPDSVLPRIRRMVASSIPGMANAD 184 >gi|205352875|ref|YP_002226676.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272656|emb|CAR37566.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|309243403|gb|ADO51979.1| SsaJ [Salmonella enterica subsp. enterica serovar Gallinarum] gi|326627947|gb|EGE34290.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 249 Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISL 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|227328506|ref|ZP_03832530.1| type III secretion protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 255 Score = 110 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89 +L + P L L +D N L I + G ++ + + Sbjct: 7 VFLLLIGLLTGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKN 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L A GLP S + E+F K + T + + AL E+ T+ I G+ Sbjct: 65 MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 + ARVH+V+P+ + + +A+V I+ E IR +VA+++P L D Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181 >gi|238913187|ref|ZP_04657024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 249 Score = 110 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPLEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|15618737|ref|NP_225023.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae CWL029] gi|15836361|ref|NP_300885.1| Yop translocation J [Chlamydophila pneumoniae J138] gi|16752212|ref|NP_445580.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39] gi|33242188|ref|NP_877129.1| secretion protein [Chlamydophila pneumoniae TW-183] gi|4377140|gb|AAD18965.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae CWL029] gi|6672018|dbj|BAA88646.1| Yop translocation J [Chlamydophila pneumoniae] gi|7189957|gb|AAF38818.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39] gi|8979202|dbj|BAA99036.1| Yop translocation J [Chlamydophila pneumoniae J138] gi|33236699|gb|AAP98786.1| secretion protein [Chlamydophila pneumoniae TW-183] Length = 335 Score = 110 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 20/216 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRISDNG------------ 80 + F+ S + +L V L + N I V L + + Sbjct: 10 LFFLMTLLCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKLPQAAAATAGAATEQM 69 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 I+VPS+ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 WDIAVPSAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMA 128 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197 TI+ + G+V A V I + TASV I+ + I+ L+A+ Sbjct: 129 STIRKMDGVVDASVQISFTTEN---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLIAS 185 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 AVP L +V+V+ L + + Sbjct: 186 AVPGLVPENVSVVSDRAAYSDITINGPWGLTEEIDY 221 >gi|76574834|gb|ABA47308.1| HrcJ [Pseudomonas cichorii] Length = 263 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID + + G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206 +A+V I+ N S IR +VA+++P + D Sbjct: 146 QPASAAVFIKYRNDLEPDSILPRIRRMVASSIPGMANAD 184 >gi|253688582|ref|YP_003017772.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755160|gb|ACT13236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 255 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 6/178 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89 +L + P L L +D N L I + G ++ + + Sbjct: 7 VFLLLIGLLAGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKN 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L A GLP S + E+F K + T + + AL E+ T+ I G+ Sbjct: 65 MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206 + ARVH+V+P+ + + +A+V I+ IR +VA+++P L D Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLSGKD 181 >gi|291484173|dbj|BAI85248.1| hypothetical protein BSNT_02644 [Bacillus subtilis subsp. natto BEST195] Length = 323 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 59/363 (16%) Query: 210 LDSTGKLLTANEMER----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 +D ++ + + I ++ +I+ ++ L +G D +V A+ Sbjct: 1 MDQNSTYYDKSDSDAGSYADSYSSQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTAD 60 Query: 266 LNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320 ++ + E + +P + S + + + + + + Sbjct: 61 IDFTKENRTEDIVEPVDKENMEGIAVSAEKVSETYQGDGAANGGTAGT-GEEDVTNYKAD 119 Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380 N +K + NYE+N YK+ L I V+V + ++ + Sbjct: 120 GENTESGNYEKNSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEPP---DAKNTASLSTE 176 Query: 381 IDSYLAEINKIV----------SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430 + +I V ++ + I ++ F ++ T + S + Sbjct: 177 RQDEIQKILSTVVRTSLDKDETQNQNLSDADINNKIVVSVQPFDGKVNLDTNTEKSSGIP 236 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + + V+ A + ++ +L+ Sbjct: 237 LWAYIVGGVLIAAIIVLIIMLI-------------------------RKKRAQEDEFEEY 271 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550 +P + I L N++ N +L M + E FAK+LR W Sbjct: 272 EYEVPQEPINLPDINEEE-----------NETAESVRRKQLEKMAKDKPEDFAKLLRSWL 320 Query: 551 RSE 553 + Sbjct: 321 AED 323 >gi|34500890|gb|AAQ73918.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 255 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89 +L + P L L +D N L I + G ++ + + Sbjct: 7 VFLLLIGLVAGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKN 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L A GLP S + E+F K + T + + AL E+ T+ I G+ Sbjct: 65 MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLKERARYIYALSQEVEATLAQIDGV 123 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 + ARVH+V+P+ + + +A+V I+ E IR +VA+++P L D Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181 >gi|170737791|ref|YP_001779051.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia MC0-3] gi|169819979|gb|ACA94561.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia MC0-3] Length = 295 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|29840690|ref|NP_829796.1| type III secretion protein SctJ [Chlamydophila caviae GPIC] gi|29835040|gb|AAP05674.1| type III secretion protein SctJ [Chlamydophila caviae GPIC] Length = 330 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 78/216 (36%), Gaps = 20/216 (9%) Query: 34 MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRISDNG------------ 80 + F+ F S + +L V L + N I V L + + Sbjct: 10 LFFVMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAATEQL 69 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140 ISVP+ + +A L GLP S +LF K + ++I L ++A Sbjct: 70 WDISVPAPQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128 Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197 TI+ + GIV A V I + + TASV I+ + I+ LVA+ Sbjct: 129 STIRKMDGIVDASVQISF---TTDAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 AVP L +V+V+ L + Sbjct: 186 AVPGLSTENVSVISDRASYSDITINGPWGLSDEIDY 221 >gi|206563892|ref|YP_002234655.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|18092671|gb|AAL59400.1| BcscJ [Burkholderia cenocepacia] gi|28394252|gb|AAO31727.1| BcscJ [Burkholderia cenocepacia] gi|198039932|emb|CAR55910.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 294 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|85059273|ref|YP_454975.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84779793|dbj|BAE74570.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 242 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 6/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L D N++ L + +ID G ++ V + A L G P Sbjct: 23 LYSGLPEEDANQMLAILMQHHIDADKQRGEGGGITLRVDQTQFINAVELLRLNGFPHRKY 82 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ N ++ ++ + E I + + G+V A V I G Sbjct: 83 TTT-EMMFPPNQLVVSPNEEQQKILYLKEQRIEGMLSQMEGVVQADVAIASRSQGGEG-D 140 Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 A + +V I+ ++ IR+LV AVP L +++L Sbjct: 141 TAPISVAVFIKYSPQVNMETFRMQIRNLVENAVPGLQYDHISIL 184 >gi|107025872|ref|YP_623383.1| Type III secretion system lipoprotein HrcJ/YscJ [Burkholderia cenocepacia AU 1054] gi|116692944|ref|YP_838477.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia cenocepacia HI2424] gi|105895246|gb|ABF78410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia AU 1054] gi|116650944|gb|ABK11584.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia cenocepacia HI2424] Length = 292 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|291086627|ref|ZP_06356294.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Citrobacter youngae ATCC 29220] gi|291067482|gb|EFE05591.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Citrobacter youngae ATCC 29220] Length = 247 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 6/182 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNG-SSISVPSSM 89 + + + + LY L + N+++V L +ID +++ +G S+S+ + Sbjct: 7 FIAIFSVVLSLCGCN-AELYDNLSQEEANQMAVLLLARHIDVDKKVNKDGLFSLSIDKAD 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P S ++F + + + E + R + + G+ Sbjct: 66 FASAVEILRLHGYPQKKYRSVEDVFPSDQ-LVTSPGQELSKIIYLKEQGLERMLADMDGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVT 208 ++ RV I P A + +V I+ + S I+ LV ++P+L ++ Sbjct: 125 ISTRVVIAQPLNTDDDADKAMTSVAVFIKYAPENNLQNSLTQIKGLVHDSIPDLSYDKIS 184 Query: 209 VL 210 ++ Sbjct: 185 IV 186 >gi|304408569|ref|ZP_07390190.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS183] gi|307305397|ref|ZP_07585145.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica BA175] gi|304352390|gb|EFM16787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica OS183] gi|306911700|gb|EFN42125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shewanella baltica BA175] Length = 239 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 6/178 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGK 92 + F + +LY L + N++ L +ID + S+ + Sbjct: 8 ILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFIN 67 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 A L G P + +LF + +E E ++ RT+ S+ G+++A Sbjct: 68 AVELLRQNGFPKPHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISA 126 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 V I P + R++ +ASV I+ + + E I+ LV AVP L +++V Sbjct: 127 SVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184 >gi|312881276|ref|ZP_07741074.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371168|gb|EFP98622.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio caribbenthicus ATCC BAA-2122] Length = 240 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 8/166 (4%) Query: 51 LYVKLEVSDVNRISVALSEANIDF--RISDNGS--SISVPSSMVGKARIHLAAQGLPSSS 106 LY L ++ N++ L +ID + ++ + A L G P + Sbjct: 22 LYQNLPQAEANQMVALLMLNHIDASSEMDAKTGKVTLKIEKDQFINAVELLRQNGYPKAE 81 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 G E + +E E ++ RT+ ++ G+++ARV I D + Sbjct: 82 Y-VGIEQLFPSGQLVSSPAQEEAKMSYLKEQQLERTLSNMDGVISARVSIAQNDSSASSS 140 Query: 167 IGAR--PTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209 +ASV I+ + ++E+ IR+L+ AVP+L ++++ Sbjct: 141 HQTPDQKSASVYIKYSPEANLGNSESQIRNLIKNAVPDLSYENISL 186 >gi|194350719|gb|ACF53790.1| HrcJ [Pantoea stewartii] Length = 146 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + +G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIKAEKHTNKDGITVMVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERVAPGEPILPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRPELDPDVIEPRIRQMVASSLPGL 146 >gi|50121023|ref|YP_050190.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560409|gb|AAS20369.1| HrcJ [Pectobacterium atrosepticum] gi|49611549|emb|CAG74997.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 255 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L L +D N L I + G ++ + + + +A L A GLP S Sbjct: 24 LNRGLSENDANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + E+F K + T + + AL E+ T+ I G++ ARVH+V+P+ + + Sbjct: 84 NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPV 142 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206 +A+V I+ IR +VA+++P L D Sbjct: 143 QPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLSGKD 181 >gi|167030900|gb|ABZ05768.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 212 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%) Query: 32 PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89 +L + P L L +D N L I + G ++ + + Sbjct: 7 VFLLLIGLLTGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKN 64 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + +A L A GLP S + E+F K + T + + AL E+ T+ I G+ Sbjct: 65 MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206 + ARVH+V+P+ + + +A+V I+ E IR +VA+++P L D Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181 >gi|330443944|ref|YP_004376930.1| type III secretion protein SctJ [Chlamydophila pecorum E58] gi|328807054|gb|AEB41227.1| type III secretion protein SctJ [Chlamydophila pecorum E58] Length = 330 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 20/175 (11%) Query: 54 KLEVSDVNRISVALSEANIDFRI------SDNGSS------ISVPSSMVGKARIHLAAQG 101 L + N I V L + + S G S ISVPS+ + +A L G Sbjct: 31 GLPGREANEIVVLLVSKGVAAQKLPKAAASTGGGSTEQLWDISVPSAQITEALAILNQAG 90 Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 LP S +LF K + ++I L ++A TI+ + GIV A V I Sbjct: 91 LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFSTE 149 Query: 162 GSFRKIGARPTASVMIRAINPSV-YKSAEA--IRHLVAAAVPNLDMGDVTVLDST 213 + TASV ++ S A I+ L+A+AVP L +V+V+ Sbjct: 150 ----EDVVPLTASVYVKHRGVLDNPNSIMASKIKRLIASAVPGLTPENVSVVSDR 200 >gi|62185504|ref|YP_220289.1| putative type III export protein [Chlamydophila abortus S26/3] gi|62148571|emb|CAH64343.1| putative type III export protein [Chlamydophila abortus S26/3] Length = 330 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 20/220 (9%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRISDNG-------- 80 + + F+ F S + +L V L + N I V L + + Sbjct: 6 ISCCLFFIMTLFCCTSCNSRSLIVHGLAGREANEIVVLLVSKGVAAQKQPQAAASTGGAS 65 Query: 81 ----SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136 ISVP++ + +A L GLP S +LF K + ++I L Sbjct: 66 AEQLWDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLS 124 Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193 ++A TI+ + GIV A V I + + TASV I+ + I+ Sbjct: 125 EQMASTIRKMDGIVDASVQISF---TTEAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181 Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 LVA+AVP L +V+V+ L + Sbjct: 182 LVASAVPGLSTENVSVISDRASYSDITINGPWGLTDEIDY 221 >gi|284007036|emb|CBA72311.1| type III secretion system apparatus lipoprotein EscJ,SsaJ [Arsenophonus nasoniae] Length = 234 Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 11/206 (5%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKAR 94 F+ LY L + N++ L +ID +G + + + A Sbjct: 1 MVLFLTGCK-VELYRNLPQDEANQMVALLMLNHIDVNSEIDGKTGKVTLQIEKDKFIDAV 59 Query: 95 IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154 L G P + G E + +E E ++ RT+ S+ G+++ARV Sbjct: 60 EILRQNGYPKTQY-VGIEDLFPAGQLVSSPAQEEAKMRYLKEQQLERTLSSMDGVISARV 118 Query: 155 HIVMPDMGSFRKIGARP--TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLD 211 I D + +V I+ EA IR+L+ A+ L +++ Sbjct: 119 SIAQADNSESNIDNTTAEKSVAVYIKYSPEVNMNGVEAQIRNLIKNAISGLQSDKISLFL 178 Query: 212 STGKLLTANEMERNILGKSLSIVQAI 237 + + ++ + +Q Sbjct: 179 QPAE--FRYQPQKMQTNQQWQYLQNY 202 >gi|333003034|gb|EGK22588.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6] Length = 240 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 91/263 (34%), Gaps = 23/263 (8%) Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + T N + + S + ++ E SNYE++ T + Sbjct: 1 MSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVG 60 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + Sbjct: 61 DVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSP 116 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + ++ A +L+ L+ L A+R Sbjct: 117 FNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAVK 172 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 V ++ ++ ++D R R+ + V Q R+ Sbjct: 173 TVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIR 217 Query: 533 HMIEINEERFAKILRKWARSEIE 555 M + + A ++R+W ++ E Sbjct: 218 EMSDNDPRVVALVIRQWINNDHE 240 >gi|254250200|ref|ZP_04943520.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184] gi|124876701|gb|EAY66691.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184] Length = 238 Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 P S S ELF K T + + + + +++RT+Q I G+V ARV +V+P+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154 Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|312958838|ref|ZP_07773357.1| type III secretion system rscJ [Pseudomonas fluorescens WH6] gi|311286608|gb|EFQ65170.1| type III secretion system rscJ [Pseudomonas fluorescens WH6] Length = 265 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 25/180 (13%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM----------VGKARIH 96 L+ +L + N + L++ +I + VP+ +G+A Sbjct: 22 ERVELHRQLSEQEANEVIAELADKHIRAQK--------VPAKDGVVVVVDAVDIGRAVRT 73 Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L A GLP + + + F K T + + AL E+ T+ +I G++ ARVH+ Sbjct: 74 LEAVGLPKVARTTLGDTFRKDGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHV 132 Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-----DMGDVTVL 210 V+P+ + + +ASV I+ + + +R +VA+++P + + +TV+ Sbjct: 133 VLPERIAPGEPVQPASASVFIKHDPRLDPDNIRSRVRRMVASSIPGMSTTVDNPQKLTVV 192 >gi|51103218|gb|AAT96359.1| HrcJ [Pseudomonas viridiflava] Length = 263 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID + + G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELASKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206 +A+V I+ S IR +VA+++P + D Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNAD 184 >gi|3776130|emb|CAA12196.1| SsaJ [Salmonella typhimurium] Length = 189 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 A+V I +P + + +V I+ ++ I+ L+ ++P L +++ Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182 Query: 210 L 210 L Sbjct: 183 L 183 >gi|333004042|gb|EGK23576.1| flagellar M-ring protein domain protein [Shigella flexneri K-272] gi|333017815|gb|EGK37122.1| flagellar M-ring protein domain protein [Shigella flexneri K-227] Length = 240 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 91/263 (34%), Gaps = 23/263 (8%) Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + T N + + S + ++ E SNYE++ T + Sbjct: 1 MSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVG 60 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + Sbjct: 61 DVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSP 116 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472 F + ++ A +L+ L+ L A+R Sbjct: 117 FNSSNESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAVK 172 Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 V ++ ++ ++D R R+ + V Q R+ Sbjct: 173 TVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIR 217 Query: 533 HMIEINEERFAKILRKWARSEIE 555 M + + A ++R+W ++ E Sbjct: 218 EMSDNDPRVVALVIRQWINNDHE 240 >gi|260778625|ref|ZP_05887517.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio coralliilyticus ATCC BAA-450] gi|260604789|gb|EEX31084.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio coralliilyticus ATCC BAA-450] Length = 242 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 9/182 (4%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMV 90 L + + LY L S+ N++ L +ID + + + + Sbjct: 7 LALVMALLLTGCK-VELYQNLPQSEANQMVALLMLNHIDASSETDAKTGKVTLKIEKDQF 65 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + G E + ++ E ++ RT+ S+ G++ Sbjct: 66 INAVELLRQNGYPKAEY-VGIEQLFPSGQLVSSPAQEDAKMSYLKEQQLERTLSSMDGVI 124 Query: 151 AARVHIVMPDMGSFRKIGARP--TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 +ARV I D + A +A+V I+ + ++E+ IR+L+ AVP+L ++ Sbjct: 125 SARVSIAQSDKSTNTGRAAPSEKSAAVYIKYSPEANLGNSESQIRNLIKNAVPDLQYENI 184 Query: 208 TV 209 ++ Sbjct: 185 SL 186 >gi|194350697|gb|ACF53779.1| HrcJ [Erwinia psidii] Length = 146 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I R S +G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQADKRTSKDGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEPRIRQMVASSLPGL 146 >gi|194350699|gb|ACF53780.1| HrcJ [Erwinia pyrifoliae] Length = 146 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + +G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRPDLDPDIIEPRIRRMVASSLPGL 146 >gi|190894055|ref|YP_001984349.1| nodulation protein [Rhizobium etli CIAT 652] gi|190699716|gb|ACE93799.1| nodulation protein [Rhizobium etli CIAT 652] Length = 273 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90 +A F+ + D L L+ D V L A I + +I+ ++ Sbjct: 22 AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAITAETADH 80 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A LA GLP S + ELF N F +T + Q+ A E ++A T+ + G+ Sbjct: 81 ARAIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYATEQQLAETLSGLDGVA 139 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 ARVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199 Query: 210 L 210 + Sbjct: 200 V 200 >gi|238897378|ref|YP_002923055.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465133|gb|ACQ66907.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 249 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 7/225 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSM 89 I +++ + LY L S+ N++ L +I+ D +++V Sbjct: 7 IFYIFLIILSLSACN-VQLYSGLAQSEANQMLALLMLHHINAEKQQNKDGTVTVNVDRKH 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A L G P + + ++F + ++ V E ++ + + G+ Sbjct: 66 FIDAVELLRQNGFPRRNYVTVDKIFPSNQ-LVTSPGQEQAKMVYIKEQQLESMLSHMEGV 124 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208 + V I + + K +ASV ++ + ++ I++L+ A+P +D ++ Sbjct: 125 IRVDVSIAVAAPSND-KNMNPSSASVFMKYSPEINLEIYQSQIKNLIHDAIPGIDYSKIS 183 Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 +L + E + K + L Sbjct: 184 ILMQPANFRFTPKKITEADNLQKQEQSHSALEWLLEHIKVIQMIL 228 >gi|89255318|ref|NP_659983.2| nodulation protein [Rhizobium etli CFN 42] gi|89213272|gb|AAM54996.2| nodulation protein [Rhizobium etli CFN 42] Length = 273 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90 +A F+ + D L L+ D V L A I + +I+ S+ Sbjct: 22 AAMLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADH 80 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A LA GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ Sbjct: 81 ARAIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 139 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 ARVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199 Query: 210 L 210 + Sbjct: 200 V 200 >gi|194350691|gb|ACF53776.1| HrcJ [Brenneria lupinicola] Length = 146 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRPDLDPDVVEPRIRRMVASSLPGL 146 >gi|218681694|ref|ZP_03529495.1| nodulation protein [Rhizobium etli CIAT 894] Length = 268 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90 +A F+ + D L L+ D V L A I + +I+ ++ Sbjct: 25 AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAIAAETADH 83 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 +A LA GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ Sbjct: 84 ARAIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 142 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 ARVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V Sbjct: 143 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 202 Query: 210 L 210 + Sbjct: 203 V 203 >gi|167567520|ref|ZP_02360436.1| type III secretion system apparatus lipoprotein [Burkholderia oklahomensis EO147] Length = 224 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L ++ N++ L +I + D +I V S A + GLP Sbjct: 25 LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +LF + ++ E ++ + ++++ G+V A+V I + + R+ Sbjct: 85 AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142 Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 +P+ASV ++ + + E IR LV P L V+V+ Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186 >gi|194350683|gb|ACF53772.1| HrcJ [Erwinia mallotivora] gi|194350685|gb|ACF53773.1| HrcJ [Erwinia mallotivora] gi|194350693|gb|ACF53777.1| HrcJ [Brenneria lupinicola] Length = 146 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146 >gi|194350695|gb|ACF53778.1| HrcJ [Erwinia psidii] Length = 146 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N ++ L +I + G ++ V ++ + +A L A GLP + + E+F K Sbjct: 1 DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 DGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146 >gi|167574399|ref|ZP_02367273.1| type III secretion system apparatus lipoprotein [Burkholderia oklahomensis C6786] Length = 249 Score = 105 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L ++ N++ L +I + D +I V S A + GLP Sbjct: 25 LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +LF + ++ E ++ + ++++ G+V A+V I + + R+ Sbjct: 85 AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142 Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 +P+ASV ++ + + E IR LV P L V+V+ Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186 >gi|187919914|ref|YP_001888945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia phytofirmans PsJN] gi|187718352|gb|ACD19575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia phytofirmans PsJN] Length = 273 Score = 105 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 10/186 (5%) Query: 29 ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISV 85 + + ++ F+ +S L+ LE N+I LS+ I+ R +D ++SV Sbjct: 3 LALIMLPFLFLIGCKSS-----LFEGLEEDQANQIIAVLSQHGIEGVKDRSADKKWNVSV 57 Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 V A LP + + +LF + V L E++ T++ Sbjct: 58 DVDDVVSATEITREYALPRDNHANLGDLF-SRQGLISNPDEDRVRYVYGLTQELSETLEK 116 Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDM 204 I G++ ARVHIV P+ + A P+ASVM+R + + + IR+LVA +V L Sbjct: 117 IDGVLVARVHIVQPERDPLMRQVAPPSASVMLRYRSDYNLEYMRDKIRNLVAGSVEGLTP 176 Query: 205 GDVTVL 210 V++ Sbjct: 177 DRVSLT 182 >gi|257487964|ref|ZP_05642005.1| type III secretion component, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 105 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 5/153 (3%) Query: 62 RISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118 + L I ++ DNG + V +A L GLP S ++ E+F K N Sbjct: 1 AMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGN 59 Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178 + + V AL E++ T+ I GI++ARVH+V+PD +++ + +ASV++R Sbjct: 60 GLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR 119 Query: 179 AINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 + I+ LVA + L V+V Sbjct: 120 FDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 152 >gi|327192836|gb|EGE59762.1| nodulation protein [Rhizobium etli CNPAF512] Length = 250 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 6/179 (3%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGK 92 +A F+ + D L L+ D V L A I + +I+ S+ + Sbjct: 1 MLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHAR 59 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 A LA GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ A Sbjct: 60 AIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATA 118 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 RVH+V+P+ I + A+ +++ + + R ++ ++ +L DV+V+ Sbjct: 119 RVHVVLPEENGRGLIKEKAKAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 177 >gi|304414266|ref|ZP_07395634.1| needle complex inner membrane lipoprotein [Candidatus Regiella insecticola LSR1] gi|304283480|gb|EFL91876.1| needle complex inner membrane lipoprotein [Candidatus Regiella insecticola LSR1] Length = 243 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 6/181 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMV 90 + + +LY L + N + L NI + V Sbjct: 7 GFMVLLILLSLTGCKVDLYNGLAEGEANEMLALLMLHNISANKESEKGGKVGLKVERDHF 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P S + +LF + ++ V E ++ + + G++ Sbjct: 67 ITAVELLRQNGYPRKSYATVDQLFPSNQ-LVTSPVQEQAKMVYLKEQQLESMLSHMDGVI 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209 A V I M K+ +ASV I+ S I+ LV AVP + ++V Sbjct: 126 HADVTIAMMAP-VDGKVSVPSSASVFIKFSPEVNLASYSPQIKSLVQDAVPGVAYEKISV 184 Query: 210 L 210 L Sbjct: 185 L 185 >gi|51103136|gb|AAT96279.1| HrcJ [Pseudomonas viridiflava] gi|51103178|gb|AAT96320.1| HrcJ [Pseudomonas viridiflava] Length = 263 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 4/159 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ L D N + L+ NID + + G ++ V + + +A L A GLP S + Sbjct: 27 LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F K + + + AL E+ +T+ I G+V ARVH+V+P+ + + Sbjct: 87 TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145 Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206 +A+V I+ S IR +VA+++P + D Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNAD 184 >gi|222082184|ref|YP_002541549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Agrobacterium radiobacter K84] gi|221726863|gb|ACM29952.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Agrobacterium radiobacter K84] Length = 274 Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 6/185 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVP 86 + I+ + F+++ D L L+ D V L A I ++ I+V Sbjct: 21 VAGILSVLVCAAFLSACSEDVL-TGLDQRDARDAQVLLERAGIRATVTGEKGDVFKIAVD 79 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 + +A L+ GLP + ELF F +T Q+ A+E ++ T+ ++ Sbjct: 80 ETDHARAIELLSDAGLPRLPHRTMAELFPGD-GFLVTPLEQKARMTYAVEQQLGETLSAL 138 Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMG 205 G+ +ARVHIV+P+ I + AS +++ + E R L+ +V L Sbjct: 139 DGVASARVHIVLPEDNGRGLIKEKARASALLQYRPSANLVDIEMKSRSLLLNSVRGLAYE 198 Query: 206 DVTVL 210 DV+V+ Sbjct: 199 DVSVV 203 >gi|254706489|ref|ZP_05168317.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10] Length = 207 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 1/193 (0%) Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427 L +D + +I +V+ A G+N+ RGD I +T+++FL+ + V Sbjct: 3 LQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAP 62 Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487 + D L R + NAL L L+ + GL L R N+ A ++ P Sbjct: 63 WTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFI 122 Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 + + + S + + + LRL MIE++EER A +L+ Sbjct: 123 GGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAAVLK 181 Query: 548 KWARSEIEDRYTQ 560 +W R Sbjct: 182 QWIHETASGREAD 194 >gi|197121159|ref|YP_002133110.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K] gi|196171008|gb|ACG71981.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K] Length = 239 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 10/171 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + G + V + +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAPADAVRARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSA----EAIRHLVAAAVPNLDMGDVTVL 210 FR + ++ + + +R LVA A LD V+V+ Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAAAVSVV 189 >gi|321224033|gb|EFX49096.1| Secretion system apparatus SsaJ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 229 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L + N++ L + +ID ++G ++ V S A L G P Sbjct: 3 LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F ++ ++ E I + + G++ A+V I +P Sbjct: 63 TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNA 120 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 + + +V I+ ++ I+ L+ ++P L +++L Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 163 >gi|307264867|ref|ZP_07546429.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920125|gb|EFN50337.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 250 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 94/305 (30%), Gaps = 58/305 (19%) Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTV 308 G N LN D + I Y P + + + +++ +Q S+ Sbjct: 1 MFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQELKEKATGTQGGSSPGT 60 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 N P V+ + + E NYEIN + K+E +S+AVVVN Sbjct: 61 SSNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQGKIESISVAVVVN---- 113 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 Q +S +I +V+ A G +S +++ + F ++ + Sbjct: 114 ---------QNLNNSMKQQIADLVTKAAGGDSLV--KVSVQGIQFNQD---------LLK 153 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + + V+ + LV GL + + + + + PI Sbjct: 154 TMQQQAKVSKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLTTAEQEVLATVEPIEP- 212 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 I+ + ++ +I+ E +++R Sbjct: 213 ---------------------------IEEIDFSEKDEKKKQIERLIKEKPELVVQVIRT 245 Query: 549 WARSE 553 W E Sbjct: 246 WLNEE 250 >gi|161614174|ref|YP_001588139.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224584080|ref|YP_002637878.1| pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|161363538|gb|ABX67306.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|224468607|gb|ACN46437.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 229 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L + N++ L + +ID ++G ++ V S A L G P Sbjct: 3 LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F ++ ++ E I + + G++ A+V I +P Sbjct: 63 TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNA 120 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 + + +V I+ ++ I+ L+ ++P L +++L Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 163 >gi|326623470|gb|EGE29815.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 229 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L + N++ L + +ID ++G ++ V S A L G P Sbjct: 3 LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F ++ ++ E I + + G++ A+V I +P Sbjct: 63 TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNA 120 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 + + +V I+ ++ I+ L+ ++P L +++L Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 163 >gi|218458744|ref|ZP_03498835.1| nodulation protein [Rhizobium etli Kim 5] Length = 246 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 6/174 (3%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHL 97 F+ + D L L+ D V L A I + +I+ S+ +A L Sbjct: 2 LFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHARAIELL 60 Query: 98 AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157 A GLP S + ELF N F +T + Q+ A+E ++A T+ + G+ ARVH+V Sbjct: 61 AGAGLPRQSFENVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATARVHVV 119 Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 +P+ I + A+ +++ + + R ++ ++ +L DV+V+ Sbjct: 120 LPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 173 >gi|167464169|ref|ZP_02329258.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 272 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 44/312 (14%), Positives = 99/312 (31%), Gaps = 45/312 (14%) Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSKVERSIRLSKDAQRSETSQ 301 LA G + VV+ +N D ++ +E + D +E S++ + + S+ + Sbjct: 1 NLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGAT 60 Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361 N V + +++ ++ NYE+N + Y ++ L+I V Sbjct: 61 AGGVAGSGTN--DVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITV 118 Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 ++ + G+ + +++ + I K A +G+ + D ++ ++ Sbjct: 119 AIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD---------IDKKVTII 169 Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481 S + + + + L + + ALRR ++ E Sbjct: 170 PKELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKKNLLEEEEEYITTGQQQ 229 Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 + + N Q +L + + E Sbjct: 230 VEYPTIDIE-----------------------------NVTNDNQVRKQLETLAKKKPEE 260 Query: 542 FAKILRKWARSE 553 F +LR W E Sbjct: 261 FVNLLRTWLVDE 272 >gi|261313943|ref|ZP_05953140.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10] gi|261302969|gb|EEY06466.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10] Length = 192 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 1/180 (0%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 +D + +I +V+ A G+N+ RGD I +T+++FL+ + V + D L R + Sbjct: 1 MDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 60 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 NAL L L+ + GL L R N+ A ++ P + Sbjct: 61 NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGGAESVGEGVQAV 120 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560 + + S + + + LRL MIE++EER A +L++W R Sbjct: 121 IGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGREAD 179 >gi|325526929|gb|EGD04393.1| flagellar MS-ring protein [Burkholderia sp. TJI49] Length = 185 Score = 100 bits (249), Expect = 6e-19, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 15/199 (7%) Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414 +RLS+AVVVN + + G Q + LA+I ++V A G + +RGD++ + + F Sbjct: 1 KRLSVAVVVNSQPVADAKGHVTMQPLPPAKLAQIEQLVKDAMGYDEKRGDSVNVVNSAFS 60 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 N+ DI+ + L A+RR + + Sbjct: 61 TVPDPNADLPWWRQPDIVEMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEPAAPAL 120 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534 L + Q L + +++ + Sbjct: 121 AAPEDPVALD---------------GLPAPEQAEADDPMLLGFENEKHRYERNLDYARTI 165 Query: 535 IEINEERFAKILRKWARSE 553 + + A +++ W E Sbjct: 166 ARQDPKIVATVVKNWVSDE 184 >gi|161503496|ref|YP_001570608.1| hypothetical protein SARI_01572 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864843|gb|ABX21466.1| hypothetical protein SARI_01572 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 249 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 73/196 (37%), Gaps = 5/196 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108 LY L + N++ L + +I+ +NG ++ V S A L G P Sbjct: 23 LYRSLPEDEANQMLALLMQHHINAEKKQEENGITLRVEQSQFINAVELLRLNGYPHRQFM 82 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 + ++F ++ ++ E I + + G++ +V I +P Sbjct: 83 TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINTKVTIALPIYD-EGSNY 140 Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227 + + +V I+ ++ I+ L+ ++P L G +++L + + Sbjct: 141 SPSSVAVFIKYSPQVNMEALRIKIKDLIEKSIPGLQYGRISILMQPAEFRMVPDAPARQT 200 Query: 228 GKSLSIVQAIQHEIEM 243 + ++ A + ++ Sbjct: 201 FSMMDVISANKEKVVK 216 >gi|229896277|ref|ZP_04511447.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] gi|229701200|gb|EEO89229.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A] Length = 115 Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 47/103 (45%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ F + L + L I + +A + SP Y LY L D I Sbjct: 10 NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L++ NI +R +DNG ++ +P+ V + R+ LA QGLP S Sbjct: 70 TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGS 112 >gi|254575119|gb|ACT68020.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 255 Score = 99 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 69/181 (38%), Gaps = 5/181 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 + + +++ + + L L N++ L + N+ G +++V S Sbjct: 9 LAVVLFALMLSACNDEKLLFNLTQEQANQVLAVLQQHNVSASKEGTLKAGYTVAVNKSES 68 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A + LP S+ + F + + + ++ + E + ++++ I+ +V Sbjct: 69 TAALSIINQYQLPWSADVQIAQAFPE-GALVTSPNAEQARVISLQEQRLEQSLRMIAQVV 127 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 ARVH+ P + V+I I+HL+ + +L +++V Sbjct: 128 NARVHVSYPAFNNDSSRTPTGHVGVIITYKGEIDDNLFIPQIKHLIKNSFYDLRYENISV 187 Query: 210 L 210 + Sbjct: 188 V 188 >gi|193061969|ref|ZP_03043065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E22] gi|194426282|ref|ZP_03058837.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli B171] gi|260845702|ref|YP_003223480.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009] gi|260858257|ref|YP_003232148.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368] gi|13447711|gb|AAK26710.1|AF200363_18 EscJ [Escherichia coli] gi|18034515|gb|AAL57537.1|AF453441_21 EscJ [Escherichia coli] gi|17384645|emb|CAC81857.1| EscJ protein [Escherichia coli] gi|57434462|emb|CAI43879.1| EscJ protein [Escherichia coli] gi|192932189|gb|EDV84787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E22] gi|194415590|gb|EDX31857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli B171] gi|195183203|dbj|BAG66748.1| T3SS structure protein EscJ [Escherichia coli O111:H-] gi|254692335|emb|CAR47976.1| EscJ protein [Escherichia coli] gi|254692403|emb|CAR48046.1| EscJ protein [Escherichia coli] gi|257756906|dbj|BAI28408.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368] gi|257760849|dbj|BAI32346.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009] gi|323153823|gb|EFZ40065.1| hypothetical protein ECEPECA14_4272 [Escherichia coli EPECa14] gi|323163015|gb|EFZ48848.1| hypothetical protein ECE128010_0611 [Escherichia coli E128010] Length = 190 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 10/179 (5%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGK 92 F+ + + LY L + N++ L N+ + +G+ +ISV + Sbjct: 9 FLFVFICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVR 68 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 A L G P + E+ + + + E +I R + I G++ Sbjct: 69 AITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDC 127 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 V + + + +A+V++ + S I++LV +V +L + +++V+ Sbjct: 128 SVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|291562021|emb|CBL40836.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [butyrate-producing bacterium SS3/4] Length = 420 Score = 98.5 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 94/319 (29%), Gaps = 22/319 (6%) Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM---PDMGSFRKIGARPT 172 T +E + L+ + I G+ A+V I + Sbjct: 4 NNAGIMSTEKDKEKYTLYELQDRLGAQIGLFEGVRDAKVTIAEGGTQKYALDDTQQTDAS 63 Query: 173 ASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230 ASV++ A AI++L+A AV ++ +V+V D+ + E E + Sbjct: 64 ASVVVTMDPGQDLTDTKAAAIKNLIARAVKGMNFTNVSVFDAATMMEVGGEDEAGNTAGT 123 Query: 231 ----LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 + ++ I N+ + L G +V LNM + Y KV++ Sbjct: 124 GKDVAELTSQVEKSIAGNVRRVLELMYGQGKVAVSVKGTLNMQKLIQETVQYTTPDKVDQ 183 Query: 287 SIRLSKDAQRSETSQPESAVT---------VEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 + + + + + + + + Sbjct: 184 NDKTGLLEKEETAGENTGSTSSGNGGAAGADANADTPRYTGQTGTQAGSDTYSNNSAIRE 243 Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVS 393 + N+ D LE ++ V ++ + + + + V Sbjct: 244 WLYNSTKEQRQIDPGVLENTTVGVTIDTDDTSIADADLVSLVANSAGITQEDAPSKITVI 303 Query: 394 AATGINSRRGDTITITSMD 412 A S+ D + +T+ Sbjct: 304 RALSAASKNTDAVPVTAPA 322 >gi|85058534|ref|YP_454236.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|45504742|gb|AAS66833.1| YsaJ [Sodalis glossinidius] gi|84779054|dbj|BAE73831.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 259 Score = 98.1 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVP 86 L+ + + A L L N++ L + NI + S G +I+VP Sbjct: 5 LLLTCMVIIAALLTTGCDNTILLNNLSQEQANKVLAVLQQHNIASQKSGSLKEGYAITVP 64 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 S A L LP+ + F N+ + + + E + ++++ I Sbjct: 65 KSDTTTALSILNQYQLPAKPEVQISQAFP-DNALIASPQAERARMLSLQEQRLEQSLKII 123 Query: 147 SGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 S +V ARVH+ P + S++I I+ L+ + N+ Sbjct: 124 SQVVNARVHVSYPLNDNTFITDPPAERVSILITYSGSLNENMFISKIKTLIKNGLANVRF 183 Query: 205 GDVTVL 210 D++V+ Sbjct: 184 EDISVV 189 >gi|16904094|gb|AAL30751.1|AF435079_1 putative EscJ protein [Escherichia coli] Length = 190 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 10/179 (5%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGK 92 F+ + + LY L + N++ L N+ + +G+ +ISV + Sbjct: 9 FLFVFICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVR 68 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 A L G P + E+ + + + + +I R + I G++ Sbjct: 69 AITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKDQDIERLLSKIPGVIDC 127 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 V + + + +A+V++ + S I++LV +V +L + +++V+ Sbjct: 128 SVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|170766695|ref|ZP_02901148.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia albertii TW07627] gi|170124133|gb|EDS93064.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia albertii TW07627] gi|315617523|gb|EFU98129.1| conserved hypothetical protein [Escherichia coli 3431] Length = 190 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ +ISV +A L G P Sbjct: 24 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + S I++LV +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|283786642|ref|YP_003366507.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168] gi|15723917|gb|AAL06364.1|AF311901_16 EscJ [Citrobacter rodentium] gi|282950096|emb|CBG89730.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168] Length = 190 Score = 97.7 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N + L N+ + +G+ +ISV +A L G P Sbjct: 24 LYTGLTEKEANLMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVTSPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + S I++L+ +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLIKNSVDDLKLENISVV 181 >gi|284007385|emb|CBA72784.1| Type III secretion bridge between inner and outermembrane lipoprotein YscJ,HrcJ,EscJ, PscJ [Arsenophonus nasoniae] Length = 263 Score = 97.3 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 6/197 (3%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQ 100 + L L+ + N + L + NID + +G I + A + Sbjct: 16 TGCNQQELLKNLDQNQANEVIALLQQNNIDAYKKESAKSGYIIYIEKEDFIPAVDLINRY 75 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 GLP ++F + + ++ +E +A+++ SI GIV A VHI Sbjct: 76 GLPRKPRLEIAQMFPSDS-LVSSPLAEKARLYSGIEQRLAQSLHSIEGIVTAHVHISYEL 134 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218 K + S +I+ + + I+ + +V + D++V+ + + + Sbjct: 135 NSLENKKEHKYHVSALIKYNDTIKDVNLLINDIKRFLKNSVNGVSYDDISVVTTEMEQIN 194 Query: 219 ANEMERNILGKSLSIVQ 235 + N G + S + Sbjct: 195 RLKSISNHQGTTSSFIW 211 >gi|238756004|ref|ZP_04617329.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri ATCC 29473] gi|238705793|gb|EEP98185.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri ATCC 29473] Length = 252 Score = 97.3 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 72/180 (40%), Gaps = 4/180 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90 +LF + + + NL +L+ N + L + I +NG SI+V + Sbjct: 7 LLFAGSTLLLTACDKQNLLTELDQRQSNEVLATLQQNGIQGTKHENGKLGFSINVAKNDF 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L LPS + + F + + + + +E + ++I +I G+V Sbjct: 67 IAAVDLLKQYNLPSKDAVEIIQAFPGDS-LVASPQAERTRLLSLIEQRLEQSITTIPGVV 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P + + + +S++ A + I+ + + + +V+V+ Sbjct: 126 NARVHVSYPLSTNTKVTQPQSISSLVTYAGSEDTKILMSKIKLFLKNSFSDSTYDNVSVV 185 >gi|18072079|gb|AAL58461.1|AF456768_1 putative EscJ protein [Escherichia coli] Length = 190 Score = 96.9 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ ++SV +A L G P Sbjct: 24 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + S I++LV +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|193070396|ref|ZP_03051338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E110019] gi|192956335|gb|EDV86796.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli E110019] Length = 190 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ ++SV +A L G P Sbjct: 24 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + S I++LV +V +L + +++V+ Sbjct: 138 NQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|15804234|ref|NP_290273.1| hypothetical protein Z5124 [Escherichia coli O157:H7 EDL933] gi|15833827|ref|NP_312600.1| EscJ [Escherichia coli O157:H7 str. Sakai] gi|168748650|ref|ZP_02773672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4113] gi|168753523|ref|ZP_02778530.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4401] gi|168759820|ref|ZP_02784827.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4501] gi|168766120|ref|ZP_02791127.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4486] gi|168772331|ref|ZP_02797338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4196] gi|168779855|ref|ZP_02804862.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4076] gi|189404719|ref|ZP_02810595.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC869] gi|189405721|ref|ZP_02823676.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC508] gi|195936256|ref|ZP_03081638.1| EscJ [Escherichia coli O157:H7 str. EC4024] gi|208805778|ref|ZP_03248115.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4206] gi|208813611|ref|ZP_03254940.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4045] gi|208821249|ref|ZP_03261569.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4042] gi|209399518|ref|YP_002273170.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4115] gi|215488984|ref|YP_002331415.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str. E2348/69] gi|217326602|ref|ZP_03442686.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. TW14588] gi|254795648|ref|YP_003080485.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|260869691|ref|YP_003236093.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128] gi|261225792|ref|ZP_05940073.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK2000] gi|261258837|ref|ZP_05951370.1| T3SS structure protein EscJ [Escherichia coli O157:H7 str. FRIK966] gi|291285061|ref|YP_003501879.1| EscJ [Escherichia coli O55:H7 str. CB9615] gi|312967942|ref|ZP_07782154.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|12518464|gb|AAG58837.1|AE005596_7 escJ [Escherichia coli O157:H7 str. EDL933] gi|2865286|gb|AAC38379.1| EscJ [Escherichia coli] gi|3414907|gb|AAC31518.1| L0039 [Escherichia coli] gi|13364048|dbj|BAB37996.1| type III secretion system EscJ protein [Escherichia coli O157:H7 str. Sakai] gi|187771787|gb|EDU35631.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4196] gi|188016943|gb|EDU55065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4113] gi|189002607|gb|EDU71593.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4076] gi|189358868|gb|EDU77287.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4401] gi|189364584|gb|EDU83003.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4486] gi|189369495|gb|EDU87911.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4501] gi|189374615|gb|EDU93031.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC869] gi|189378814|gb|EDU97230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC508] gi|195957524|gb|ACG59635.1| type III secretion system protein EscJ [Escherichia coli O157:H7] gi|195957583|gb|ACG59693.1| type III secretion system protein EscJ [Escherichia coli] gi|195957640|gb|ACG59749.1| EscJ [Escherichia coli] gi|208725579|gb|EDZ75180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4206] gi|208734888|gb|EDZ83575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4045] gi|208741372|gb|EDZ89054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4042] gi|209160918|gb|ACI38351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC4115] gi|215267056|emb|CAS11501.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str. E2348/69] gi|217322823|gb|EEC31247.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. TW14588] gi|221361430|emb|CAX18583.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361487|emb|CAX18658.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361548|emb|CAX18738.1| Type III secretion system, LEE associated [Escherichia coli] gi|254595048|gb|ACT74409.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|255348321|gb|ACU09463.1| EscJ protein [Escherichia coli] gi|257766047|dbj|BAI37542.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128] gi|290764934|gb|ADD58895.1| EscJ [Escherichia coli O55:H7 str. CB9615] gi|312287503|gb|EFR15411.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|320191253|gb|EFW65903.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC1212] gi|320193807|gb|EFW68440.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli WV_060327] gi|320201524|gb|EFW76103.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli EC4100B] gi|320639364|gb|EFX08979.1| EscJ [Escherichia coli O157:H7 str. G5101] gi|320644808|gb|EFX13844.1| EscJ [Escherichia coli O157:H- str. 493-89] gi|320650072|gb|EFX18568.1| EscJ [Escherichia coli O157:H- str. H 2687] gi|320655419|gb|EFX23354.1| EscJ [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661046|gb|EFX28482.1| EscJ [Escherichia coli O55:H7 str. USDA 5905] gi|320666171|gb|EFX33177.1| EscJ [Escherichia coli O157:H7 str. LSU-61] gi|323178904|gb|EFZ64480.1| hypothetical protein ECOK1180_2638 [Escherichia coli 1180] gi|326337303|gb|EGD61138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. 1044] gi|326341677|gb|EGD65466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. 1125] Length = 190 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ ++SV +A L G P Sbjct: 24 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + S I++LV +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|54311610|emb|CAG17525.1| EscJ protein [Escherichia coli] Length = 190 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ ++SV +A L G P Sbjct: 24 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 84 AN-IEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + S I++LV +V +L + +++V+ Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181 >gi|325522916|gb|EGD01366.1| type III secretion protein SctJ [Burkholderia sp. TJI49] Length = 263 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 29/193 (15%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158 P S S ELF K T + + + L T+Q I G+V ARV +V+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 150 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV-------- 209 P+ +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 151 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLFLQPAAAR 210 Query: 210 ---LDSTGKLLTA 219 +D G LT Sbjct: 211 TTRVDGVGSALTD 223 >gi|194350701|gb|ACF53781.1| HrcJ [Brenneria nigrifluens] gi|194350703|gb|ACF53782.1| HrcJ [Brenneria nigrifluens] gi|194350705|gb|ACF53783.1| HrcJ [Brenneria alni] Length = 146 Score = 95.8 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I + G ++ + + + +A L A GLP S + E+F K Sbjct: 1 DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146 >gi|212711714|ref|ZP_03319842.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM 30120] gi|212685816|gb|EEB45344.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM 30120] Length = 240 Score = 95.4 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 4/178 (2%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGK 92 ++ + L L N + L E +D + S NG SI V + Sbjct: 1 MISFIGLLLGCDNQLLLSNLSQRQSNEVLAILQEHGVDANRKQDSKNGDSIRVAPNDFVI 60 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152 A L LPS + F + + + + +E + +++ +I +V A Sbjct: 61 AVDLLRQYNLPSKDPVEIIDAFPGDS-LVASPQAERTRLLSLIEQRLEQSLLTIPNVVNA 119 Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 RVH+ P G+ A+ +S++ + N I+ + + +V+V+ Sbjct: 120 RVHVSYPISGNGPVKQAQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 177 >gi|194350707|gb|ACF53784.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 146 Score = 95.4 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I + G ++ + + + +A L A GLP S + E+F K Sbjct: 1 DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSAEA-IRHLVAAAVPNL 202 I+ E IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEQRIRRMVASSIPGL 146 >gi|310923250|emb|CBW54716.1| YscJ, lipoprotein, signal peptidase II cleavage site LFLTG-CKVDL, length difference in automated annotation (should start at 35114 gtg/V, point mutation here from M to V), PMID 18227263 [Yersinia enterocolitica (type O:8)] gi|318608181|emb|CBY78155.1| type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Yersinia enterocolitica subsp. palearctica Y11] Length = 210 Score = 95.4 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 6/153 (3%) Query: 63 ISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 + L + + + + V S V +A L +G P S ++ ++F K Sbjct: 1 MLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKD-G 59 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIR 178 + + A EI+RT+ I G++ ARVH+V+P + + K G +ASV I+ Sbjct: 60 LISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 119 Query: 179 AINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + + I+ LV ++ L ++V+ Sbjct: 120 HAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 152 >gi|115358974|ref|YP_776112.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria AMMD] gi|115284262|gb|ABI89778.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria AMMD] Length = 309 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 18/172 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102 LY L D N++ L +A I ++ +SV + A L A GL Sbjct: 50 LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 109 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158 P S S ELF K T + + + L T+Q I G+V ARV +V+ Sbjct: 110 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 164 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 P+ +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 165 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 216 >gi|172063766|ref|YP_001811417.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia ambifaria MC40-6] gi|171996283|gb|ACB67201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria MC40-6] Length = 295 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 18/172 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102 LY L D N++ L A I ++ +SV + A L A GL Sbjct: 36 LYSGLSERDANQMVAVLGAAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158 P S S ELF K T + + + L T+Q I G+V ARV +V+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 150 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 P+ +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 151 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|238757855|ref|ZP_04619037.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC 35236] gi|238703840|gb|EEP96375.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC 35236] Length = 233 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 6/180 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVG 91 ML A + +LY L D N++ L + NID ++ G ++ V + Sbjct: 1 MLISALALLLTGCR-VDLYSALPEEDANQMLAILMQHNIDADKQLVAGGVTLRVEKAQFI 59 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 A L G P S S +F ++ ++ + E I + + G+V Sbjct: 60 NAVELLRLNGFPRRSYISADTMFPPNQ-LVVSPAEEQQKILFLKEQRIENMLSQMDGVVH 118 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 V I G + +V I+ + I++LV ++P + +++L Sbjct: 119 VDVTIASSGPDEEGATGQ-TSVAVFIKFWAQVNLVALRVQIKNLVEKSIPGVQQDQISIL 177 >gi|7025353|gb|AAF35844.1|AF220002_1 flagellar M ring protein FliF [Rhodospirillum centenum] Length = 132 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 F ++ LY L+ ++ RI L + +++S G +I +P + + R+ LA Q Sbjct: 19 FGLSRAPMGLLYAGLDDAEAGRILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQ 78 Query: 101 GLPSSSSNSGYELFDKVNS 119 GLPS+ +GYELFD+ + Sbjct: 79 GLPSAGG-AGYELFDEQGA 96 >gi|259908651|ref|YP_002649007.1| Type III secretion system [Erwinia pyrifoliae Ep1/96] gi|224964273|emb|CAX55780.1| Type III secretion system [Erwinia pyrifoliae Ep1/96] gi|283478623|emb|CAY74539.1| Lipoprotein PrgK precursor [Erwinia pyrifoliae DSM 12163] Length = 253 Score = 94.6 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 76/182 (41%), Gaps = 5/182 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89 I+ + + ++ + + L L N++ L + NI + S +G +ISV Sbjct: 8 ILFVLISAGSISGCNNEKLLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQE 67 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A + LP S+ + F + ++ + ++ + LE + ++++ I+ + Sbjct: 68 NTAALSIINQYQLPWSAEIQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQV 126 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 V ARVHI P + S + V+I I+ L+ ++ ++ +++ Sbjct: 127 VNARVHISYPGVRSDKGNKTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENIS 186 Query: 209 VL 210 V+ Sbjct: 187 VV 188 >gi|86157134|ref|YP_463919.1| secretory protein YscJ/FliF [Anaeromyxobacter dehalogenans 2CP-C] gi|85773645|gb|ABC80482.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Anaeromyxobacter dehalogenans 2CP-C] Length = 239 Score = 94.6 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 10/171 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + D G + V + +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADGGWEVRVAPADAARARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQ-RPAGFDAVLAKGSMVPTATEEHAMYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSA----EAIRHLVAAAVPNLDMGDVTVL 210 FR + ++ + + +R LVA A LD G V+V+ Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAGAVSVV 189 >gi|194350717|gb|ACF53789.1| HrcJ [Pectobacterium carotovorum subsp. odoriferum] Length = 146 Score = 94.2 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I + G ++ + + + +A L A GLP S + E+F K Sbjct: 1 DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 61 -SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146 >gi|194350689|gb|ACF53775.1| HrcJ [Erwinia rhapontici] Length = 146 Score = 93.8 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 4/147 (2%) Query: 59 DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 D N L I + G ++ + + + +A L A GLP S + E+F + Sbjct: 1 DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVF-Q 59 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176 + T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V Sbjct: 60 RSGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119 Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202 I+ IR +VA+++P L Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146 >gi|310767451|gb|ADP12401.1| Type III secretion system [Erwinia sp. Ejp617] Length = 253 Score = 93.4 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 76/182 (41%), Gaps = 5/182 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89 I+ + + ++ + + L L N++ L + NI + S +G +ISV Sbjct: 8 ILFVLISAGSISGCNNEKLLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQE 67 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 A + LP S+ + F + ++ + ++ + LE + ++++ I+ + Sbjct: 68 NTAALSIINQYQLPWSAEIQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQV 126 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 V ARVHI P + S + V+I I+ L+ ++ ++ +++ Sbjct: 127 VNARVHISYPGVRSDKGNKTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENIS 186 Query: 209 VL 210 V+ Sbjct: 187 VV 188 >gi|134294015|ref|YP_001117751.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia vietnamiensis G4] gi|134137172|gb|ABO58286.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia vietnamiensis G4] Length = 297 Score = 93.1 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 18/172 (10%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102 LY L D N + L +A I ++ +SV + A L A GL Sbjct: 36 LYSGLSERDANEMVAVLGDAGIGASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158 P S S ELF K T + + + L T+Q I G+V ARV +V+ Sbjct: 96 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 150 Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 P+ +A+V IR ++ A ++ LVA ++ L +V++ Sbjct: 151 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202 >gi|115377828|ref|ZP_01465016.1| bcscJ [Stigmatella aurantiaca DW4/3-1] gi|310820299|ref|YP_003952657.1| type III secretion apparatus lipoprotein, yscj/hrcj family [Stigmatella aurantiaca DW4/3-1] gi|115365160|gb|EAU64207.1| bcscJ [Stigmatella aurantiaca DW4/3-1] gi|309393371|gb|ADO70830.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family [Stigmatella aurantiaca DW4/3-1] Length = 269 Score = 93.1 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 77/215 (35%), Gaps = 19/215 (8%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNG------SSISVPSSMVGKARIHLAAQGLPS 104 L L D N I V LS+ I G SI VP + +A L A LP Sbjct: 25 LQHGLTEQDANEIYVLLSKNGISAVKLKEGEGQDVQFSIQVPKADAAQAAELLRANSLPR 84 Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 G+ F K S T+ + ++A+ GE++ + I G++ + V + +P+ Sbjct: 85 P-MEKGFNHFAK-GSMVPTAAEERAMMLKAIAGEVSNALNKIDGVLESNVIVNIPENNDL 142 Query: 165 --RKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219 + P+ASVMIR ++ VA+AV L VTV LLT Sbjct: 143 TQPENKPMPSASVMIRYRPSLEGKAPVEEPQVKQFVASAVQELKPEAVTV------LLTP 196 Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254 + + + +G Sbjct: 197 ALVSSAETSPESRLQDVFGMRMTAASASQFRILVG 231 >gi|218508171|ref|ZP_03506049.1| flagellar MS-ring protein [Rhizobium etli Brasil 5] Length = 92 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 +IL V + I + +AA FVN P + LYV L+ D+N+IS+AL+EANI+F++ +G+S Sbjct: 1 MILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDLNQISMALAEANINFQVGTDGAS 60 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115 ISVP+ M GKAR+ LA +GLP +S+N+GYELFD Sbjct: 61 ISVPAGMTGKARLMLAERGLP-NSANAGYELFD 92 >gi|226313069|ref|YP_002772963.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599] gi|226096017|dbj|BAH44459.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC 100599] Length = 298 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 41/330 (12%), Positives = 88/330 (26%), Gaps = 42/330 (12%) Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSK 283 + +I ++ +I+ N+ L +G D ++N D + E + + + Sbjct: 6 QQETIKADVEKKIQQNLYNLLGTIMGRDKVIVHTFLKMNFDKENRVENIVEAPDKENNEG 65 Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343 + S + A + P N P S ++ + N E+N Sbjct: 66 LIISSQKLSKAFSGQGQPPGGIAGTNNNAVTNYPGATPQG-SNSQYEELNDTINREVNRI 124 Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403 + T YK+E ++I V V A + L I +++ Sbjct: 125 TRNVTSSPYKIEDITINVGV---------EPPAGGTLDAATLESIKQVLRN--------- 166 Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463 + + + S T + +L R F+ + V + Sbjct: 167 ----VVRVTLSDQVTDLSDTELDKHISVLPRQFSGKAEIEDSSALSPAVLWTV------- 215 Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 G + + + L + + Sbjct: 216 -------GGIAVLALAAVAFLVYRRRSQAKQQQEEEELPDLLPPLNAGEIPDLIYQEDGD 268 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 +L + + F +LR W + Sbjct: 269 QVVVRKQLEKLARSKPDEFVVLLRTWLAED 298 >gi|194350681|gb|ACF53771.1| HrcJ [Erwinia amylovora] Length = 120 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + V ++ + +A L A GLP + + E+F K T + + AL E+ T Sbjct: 1 VLVDAAELNRAVHILDAAGLPRPARTNLGEVFQKNGVI-STPLEERARYIYALSQEVEST 59 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPN 201 + I G++ ARVH+V+P+ + + +A+V I+ IR +VA+++P Sbjct: 60 LSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPG 119 Query: 202 L 202 L Sbjct: 120 L 120 >gi|268592388|ref|ZP_06126609.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rettgeri DSM 1131] gi|291312174|gb|EFE52627.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rettgeri DSM 1131] Length = 249 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 4/179 (2%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVG 91 + + F+ + L +L N + L E ++ + + NG SI V S Sbjct: 8 ILIGFISFLAACDNQLLLSQLSQRQSNEVLAILQEHGVEATRKQDNKNGDSIRVQPSDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 A L LPS + F + + + + +E + +++ +I I+ Sbjct: 68 IAVDLLRQYNLPSKEPIEIIQAFPGDS-LVASPQAERTRLLSLIEQRLEQSLLTIPDIIN 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P G+ + +S++ + + I+ + + + +V+V+ Sbjct: 127 ARVHVSYPLNGNNPTKQIQNVSSLVTYSGSEDPQMMMHKIKLFLTNSFAEANYDNVSVV 185 >gi|123443740|ref|YP_001007711.1| type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|8996043|gb|AAF82342.1|AF005744_21 YsaJ [Yersinia enterocolitica] gi|122090701|emb|CAL13577.1| type III secretion system apparatus lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 247 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 4/179 (2%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVG 91 L ++A + ++ L +L N + L E ++ +NG +SI V S Sbjct: 8 LVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 A L LPS S + F + + + + +E + +++ +I G+V Sbjct: 68 TAVDLLRLYNLPSKESVEIIQAFPGDS-LVASPQAERSRLLSLIEQRLEQSLLTIPGVVN 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P + R + +S++ A N I+ + + +V+V+ Sbjct: 127 ARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185 >gi|238898342|ref|YP_002924023.1| type III needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466101|gb|ACQ67875.1| type III needle complex inner membrane lipoprotein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 249 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 12/192 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N +S L NI + +D G SISV A + LPS Sbjct: 24 LLKGLDQQQANEVSALLLRHNIPAQKTDQLKEGYSISVNPEDFVAAVGLIKTYNLPSKPR 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F + + ++ +E + +++QS+ GIV ARVH+ Sbjct: 84 VEISQMFPGDS-LISSPRQEKARLYSGIEQRLEQSLQSMRGIVTARVHVSYDLDSGEGGR 142 Query: 168 GARP-TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 S ++ ++ + + +LD +++V+ L+ ++ Sbjct: 143 KTPAIHLSSLVNHDQGMDTSLLIGDVKRFLKNSFNDLDYENISVI------LSEQAPMQH 196 Query: 226 ILGKSLSIVQAI 237 + Sbjct: 197 QAPVQKAAQVNY 208 >gi|15088593|gb|AAK84104.1|AF369954_2 YsaJ [Yersinia enterocolitica] Length = 247 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 4/179 (2%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVG 91 L ++A + ++ L +L N + L E ++ +NG +SI V S Sbjct: 8 LVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 A L LPS S + F + + + + +E + +++ +I G+V Sbjct: 68 TAVDLLRLYNLPSQESVEHIQAFPGDS-LVASPQAERSRLLSLIEQRLEQSLLTIPGVVN 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P + R + +S++ A N I+ + + +V+V+ Sbjct: 127 ARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185 >gi|308126335|ref|ZP_07663715.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ4037] gi|308110706|gb|EFO48246.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio parahaemolyticus AQ4037] Length = 190 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 10/172 (5%) Query: 84 SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143 V SS + A L +G P ++ E+F K + + + V A E++ T+ Sbjct: 2 MVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTL 60 Query: 144 QSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201 I G++ ARVH+V+ D +ASV I+ S I+ LV ++ Sbjct: 61 SQIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEG 120 Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253 L+ ++V+ E + +S + ++ L L Sbjct: 121 LNYDRISVV-------MVPSSEVRVTTQSNQFKSILSVQVTKETANHLIGIL 165 >gi|188534048|ref|YP_001907845.1| Type III secretion system [Erwinia tasmaniensis Et1/99] gi|188029090|emb|CAO96959.1| Type III secretion system [Erwinia tasmaniensis Et1/99] Length = 259 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 6/181 (3%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVG 91 + F + + + L L N++ L + NI S N G +I V Sbjct: 10 FIILTAFLLAACDNERLLENLTQDQANQVLAILQQHNISANKSGNLKAGYTIQVDEIENT 69 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 A ++ LP + + F + + +++ + LE + +++++I+ +V Sbjct: 70 AALSIISQYQLPWPADIQIGQAFP-DGALVASPNAEQVRVLSLLEQRLGQSLRTIAQVVN 128 Query: 152 ARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209 ARVHI P + + V+I ++ L+ ++ ++ +++V Sbjct: 129 ARVHISYPPLKNGMADKTLTNHVGVLISYKGDINQSLFIPQVKSLIKNSLDDIKYENISV 188 Query: 210 L 210 + Sbjct: 189 V 189 >gi|108759625|ref|YP_633790.1| YscJ/FliF family type III secretion lipoprotein [Myxococcus xanthus DK 1622] gi|108463505|gb|ABF88690.1| type III secretion lipoprotein, YscJ/FliF family [Myxococcus xanthus DK 1622] Length = 267 Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 10/208 (4%) Query: 54 KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ N + L E +D R SI V A L+ GLP Sbjct: 27 GLDERQANELQSVLVERGLDARKVPEAGKKPTWSIEVADEHASDAVRILSELGLPRPKEE 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 G ++F T + + RVR +E + +T+QS+ G++ ARVH+V+P + Sbjct: 87 VGCDVF-GGGGLVRTPVEESVCRVRVMERSLEKTLQSVEGVLLARVHLVVPAPPRVGQAP 145 Query: 169 ARPTASVMIRAIN---PSVYKSAEAIRHLVAAAVPNLDMGDVT-VLDSTGKLLTANEMER 224 AS M+R V +S+E ++ L+A V L V+ ++D + A Sbjct: 146 GPSKASAMLRVAPGNAARVRQSSETLKVLLAGGVEGLSPEAVSLLVDEVSTRVEAPTEVG 205 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAF 252 L + A+ + ++ AL Sbjct: 206 VSPLTRLRALLAVLGLMVTGLSVALVLV 233 >gi|194350709|gb|ACF53785.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum] Length = 143 Score = 91.1 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%) Query: 62 RISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 L I + G ++ + + + +A L A GLP S + E+F K + Sbjct: 1 EAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SG 59 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ Sbjct: 60 VISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKY 119 Query: 180 INPSVYKSAEA-IRHLVAAAVPNL 202 E IR +VA+++P L Sbjct: 120 RAELEPDGMEQRIRRMVASSIPGL 143 >gi|161502085|ref|YP_001569197.1| hypothetical protein SARI_00102 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863432|gb|ABX20055.1| hypothetical protein SARI_00102 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 252 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 75/225 (33%), Gaps = 12/225 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93 + +L L+ N + L NI+ +I G SI+V A Sbjct: 9 FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 + LP ++F + + ++ A+E + +++Q++ G+++AR Sbjct: 69 VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211 VHI D G + S + S I+ + + ++D +++V+ Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256 L+ + + + + I A G Sbjct: 187 -----LSERSDAQLQAPGTPVKRDSFATSWIVLIILLSAMLAGFG 226 >gi|194350687|gb|ACF53774.1| HrcJ [Erwinia rhapontici] Length = 144 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 4/144 (2%) Query: 62 RISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119 L I + G ++ + + + +A L A GLP S + E+F K + Sbjct: 2 EAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SG 60 Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 T + + AL E+ T+ I G++ ARVH+V+P+ + + +A+V I+ Sbjct: 61 VISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKY 120 Query: 180 INPSVYKSA-EAIRHLVAAAVPNL 202 IR +VA+++P L Sbjct: 121 RAELEPDGMEPRIRRMVASSIPGL 144 >gi|238796123|ref|ZP_04639634.1| Type III secretion system apparatus lipoprotein [Yersinia mollaretii ATCC 43969] gi|238720068|gb|EEQ11873.1| Type III secretion system apparatus lipoprotein [Yersinia mollaretii ATCC 43969] Length = 251 Score = 90.7 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 6/180 (3%) Query: 35 LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVG 91 L +A ++ L +L N + L E ++ DNG SSI V S Sbjct: 8 LIIAVLGLLSGCDNQTLLTELSQRQGNEVLAVLQENGVEGTRRDNGKLGSSIKVARSDFV 67 Query: 92 KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151 A L LPS + F + + + + +E + +++ +I G+V Sbjct: 68 TAVDLLRLYNLPSKDPVEIIQAFPGDS-LVASPQAERSRLLSLIEQRLQQSLLTIPGVVN 126 Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P + ++ S ++ K I+ + + +V+V+ Sbjct: 127 ARVHVSYPLNSNN-RVKQLQQVSSLVTYAGNEDPKQMMNKIKLFLTNSFTETSYDNVSVV 185 >gi|313650159|gb|EFS14572.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T] gi|332756093|gb|EGJ86446.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70] gi|332757293|gb|EGJ87630.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71] gi|332757503|gb|EGJ87838.1| flagellar M-ring protein domain protein [Shigella flexneri K-671] gi|332766675|gb|EGJ96879.1| flagellar M-ring family protein [Shigella flexneri 2930-71] gi|333003355|gb|EGK22901.1| flagellar M-ring protein domain protein [Shigella flexneri K-218] gi|333017575|gb|EGK36887.1| flagellar M-ring protein domain protein [Shigella flexneri K-304] Length = 205 Score = 90.4 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 8/157 (5%) Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + + T N + + S + ++ E SNYE++ T + Sbjct: 1 MSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVG 60 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + Sbjct: 61 DVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSP 116 Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449 F + ++ A +L+ Sbjct: 117 FNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVA 149 >gi|197249815|ref|YP_002147769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213518|gb|ACH50915.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 252 Score = 90.4 bits (222), Expect = 8e-16, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93 + +L L+ N + L NI+ +I G SI+V A Sbjct: 9 FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 + LP ++F + + ++ A+E + +++Q++ G+++AR Sbjct: 69 VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211 VHI D G + S + S I+ + + ++D +++V+ Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241 L+ + + + Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211 >gi|312172181|emb|CBX80438.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158] Length = 230 Score = 90.0 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 73/186 (39%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVP 86 LV I + + +++ + L L N++ L + NI + S G +I++ Sbjct: 5 LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 A + LP S+ + F + ++ + ++ + LE + ++++ I Sbjct: 65 QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123 Query: 147 SGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 + +V ARVHI P A V+I I+ + ++ ++ Sbjct: 124 NQVVNARVHISYPGLRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLNDVRY 183 Query: 205 GDVTVL 210 +++V+ Sbjct: 184 ENISVV 189 >gi|16766177|ref|NP_461792.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414823|ref|YP_151898.1| pathogenicity island 1 effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181373|ref|YP_217790.1| cell invasion protein; lipoprotein, may link inner and outer membranes [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615781|ref|YP_001589746.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550282|ref|ZP_02344039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994182|ref|ZP_02575274.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230939|ref|ZP_02655997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235909|ref|ZP_02660967.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242607|ref|ZP_02667539.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262008|ref|ZP_02683981.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463996|ref|ZP_02697913.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820434|ref|ZP_02832434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446696|ref|YP_002042114.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451609|ref|YP_002046834.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472324|ref|ZP_03078308.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737310|ref|YP_002115824.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197262326|ref|ZP_03162400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363751|ref|YP_002143388.1| pathogenicity island 1 effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244869|ref|YP_002216842.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388692|ref|ZP_03215304.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928364|ref|ZP_03219564.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353815|ref|YP_002227616.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858134|ref|YP_002244785.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584649|ref|YP_002638447.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909638|ref|ZP_04653475.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|1172615|sp|P41786|PRGK_SALTY RecName: Full=Lipoprotein prgK; Flags: Precursor gi|717103|gb|AAB60191.1| PrgK protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421418|gb|AAL21751.1| cell invasion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129080|gb|AAV78586.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129006|gb|AAX66709.1| cell invasion protein; lipoprotein, may link inner and outer membranes [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365145|gb|ABX68913.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405359|gb|ACF65581.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409913|gb|ACF70132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458688|gb|EDX47527.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712812|gb|ACF92033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633338|gb|EDX51752.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095228|emb|CAR60779.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197240581|gb|EDY23201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290699|gb|EDY30053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939385|gb|ACH76718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605790|gb|EDZ04335.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322686|gb|EDZ07883.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273596|emb|CAR38583.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324687|gb|EDZ12526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327955|gb|EDZ14719.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334572|gb|EDZ21336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338256|gb|EDZ25020.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342832|gb|EDZ29596.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349248|gb|EDZ35879.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709937|emb|CAR34291.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469176|gb|ACN47006.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248007|emb|CBG25840.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994999|gb|ACY89884.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159431|emb|CBW18949.1| type III secretion system apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913889|dbj|BAJ37863.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087276|emb|CBY97041.1| Lipoprotein prgK Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223420|gb|EFX48486.1| Type III secretion bridge between inner and outermembrane lipoprotein YscJ,HrcJ,EscJ, PscJ [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614310|gb|EFY11241.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621625|gb|EFY18478.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624486|gb|EFY21319.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628817|gb|EFY25600.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633456|gb|EFY30198.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635968|gb|EFY32676.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639676|gb|EFY36361.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646857|gb|EFY43360.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650626|gb|EFY47031.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654761|gb|EFY51080.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658981|gb|EFY55234.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664452|gb|EFY60646.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668299|gb|EFY64456.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673721|gb|EFY69822.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677782|gb|EFY73845.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681388|gb|EFY77420.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683790|gb|EFY79800.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715857|gb|EFZ07428.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131223|gb|ADX18653.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193821|gb|EFZ79024.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200291|gb|EFZ85373.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203206|gb|EFZ88235.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205547|gb|EFZ90512.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210058|gb|EFZ94961.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216361|gb|EGA01088.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221108|gb|EGA05539.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226930|gb|EGA11112.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230786|gb|EGA14904.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234863|gb|EGA18949.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238902|gb|EGA22952.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241602|gb|EGA25633.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248251|gb|EGA32187.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251165|gb|EGA35038.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256049|gb|EGA39787.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263183|gb|EGA46721.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264313|gb|EGA47819.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271139|gb|EGA54567.1| type III secretion system lipoprotein PrgK [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624602|gb|EGE30947.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628923|gb|EGE35266.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989743|gb|AEF08726.1| needle complex inner membrane lipoprotein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 252 Score = 90.0 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93 + +L L+ N + L NI+ +I G SI+V A Sbjct: 9 FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 + LP ++F + + ++ A+E + +++Q++ G+++AR Sbjct: 69 VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211 VHI D G + S + S I+ + + ++D +++V+ Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241 L+ + + + Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211 >gi|194350715|gb|ACF53788.1| HrcJ [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G ++ + + + +A L A GLP S + E+F K + T + + A Sbjct: 6 RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 64 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193 L E+ T+ I G++ ARVH+V+P+ + + +A+V I+ E IR Sbjct: 65 LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 124 Query: 194 LVAAAVPNL 202 +VA+++P L Sbjct: 125 MVASSIPGL 133 >gi|292488055|ref|YP_003530932.1| lipoprotein PrgK [Erwinia amylovora CFBP1430] gi|292899266|ref|YP_003538635.1| type III secretion system lipoprotein [Erwinia amylovora ATCC 49946] gi|291199114|emb|CBJ46227.1| type III secretion system lipoprotein [Erwinia amylovora ATCC 49946] gi|291553479|emb|CBA20524.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430] Length = 259 Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 73/186 (39%), Gaps = 6/186 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVP 86 LV I + + +++ + L L N++ L + NI + S G +I++ Sbjct: 5 LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 A + LP S+ + F + ++ + ++ + LE + ++++ I Sbjct: 65 QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123 Query: 147 SGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204 + +V ARVHI P A V+I I+ + ++ ++ Sbjct: 124 NQVVNARVHISYPGFRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLNDVRY 183 Query: 205 GDVTVL 210 +++V+ Sbjct: 184 ENISVV 189 >gi|183600567|ref|ZP_02962060.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827] gi|188019844|gb|EDU57884.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827] Length = 253 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 4/180 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 ++ + + L L N + L E ++ + G SI V Sbjct: 7 LILITFVGLLAGCDNQLLLSHLSQRQSNEVLAILQEHGVEASRKQDNKQGDSIKVSPRDF 66 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L LPS + F + + + + +E + +++ +I +V Sbjct: 67 VIAVDLLRQYNLPSKDPVEIIQAFPGDS-LVASPQAERTRLLSLIEQRLEQSLLTIPDVV 125 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 ARVH+ P G+ + +S++ + N I+ + ++ + +V+V+ Sbjct: 126 NARVHVSYPLNGNTPTKQTQKVSSLVTYSGNEDPKLMMNKIKLFLTSSFAETNYDNVSVV 185 >gi|71042041|pdb|1YJ7|A Chain A, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj gi|71042042|pdb|1YJ7|B Chain B, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj gi|71042043|pdb|1YJ7|C Chain C, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj gi|71042044|pdb|1YJ7|D Chain D, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type Iii Secretion System Protein Escj Length = 171 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 10/164 (6%) Query: 51 LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N++ L N+ + +G+ ++SV ++ +A L G P Sbjct: 5 LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKF 64 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + E+ + + + E +I R + I G++ V + + + Sbjct: 65 -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 118 Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210 +A+V++ + S I++LV +V +L + +++V+ Sbjct: 119 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 162 >gi|312972926|ref|ZP_07787099.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|62085073|gb|AAX62937.1| putative type III secretion apparatus lipoprotein [Escherichia coli] gi|310332868|gb|EFQ00082.1| conserved hypothetical protein [Escherichia coli 1827-70] gi|323941625|gb|EGB37805.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli E482] gi|332344751|gb|AEE58085.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 244 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GI+++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQWLEQSLKIMDGIISSRVHVSYDVDN 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|16761648|ref|NP_457265.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143132|ref|NP_806474.1| pathogenicity island 1 effector protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213417664|ref|ZP_03350792.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425726|ref|ZP_03358476.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580253|ref|ZP_03362079.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650551|ref|ZP_03380604.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855142|ref|ZP_03383382.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823852|ref|ZP_06543458.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25317961|pir||AC0849 pathogenicity 1 island effector protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503949|emb|CAD05978.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138765|gb|AAO70334.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 252 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93 + +L L+ N + L NI+ +I G SI+V A Sbjct: 9 FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 + LP ++F + + ++ A+E + +++Q++ G+++AR Sbjct: 69 VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211 VHI D G + S + S I+ + + ++D +++V+ Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241 L+ + + + Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211 >gi|218988933|gb|ACL13596.1| lipoprotein PrgK [Salmonella enterica subsp. salamae serovar Sofia] Length = 252 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93 + +L L+ N + L NI+ +I G SI+V A Sbjct: 9 FLLVVTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 + LP ++F + + ++ A+E + +++Q++ G+++AR Sbjct: 69 VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211 VHI D G + S + S I+ + + ++D +++V+ Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186 Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241 L+ + + + Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211 >gi|85060054|ref|YP_455756.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] gi|84780574|dbj|BAE75351.1| type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 253 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 6/183 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89 + +++ + L L+ N + L NI +D +G S+++ Sbjct: 7 LACGAMMIAMLSACKEEPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVD 66 Query: 90 VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149 + A L +PS ++F + + ++ A+E + +++Q + G+ Sbjct: 67 LPAAVDLLRTYQVPSPPRMEIAQMFPGDS-LVSSPRAEKARLYSAIEQRLEQSLQVLEGV 125 Query: 150 VAARVHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207 V ARVH+ D G + S ++ S ++ + + + + Sbjct: 126 VNARVHVSYDIDAGENGRAPRPVHLSALVSYEPDSDPALLIGDVKRFLKNSFAEVAYEHI 185 Query: 208 TVL 210 +V+ Sbjct: 186 SVV 188 >gi|301027465|ref|ZP_07190802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 69-1] gi|300394973|gb|EFJ78511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 69-1] Length = 244 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|261344604|ref|ZP_05972248.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rustigianii DSM 4541] gi|282567518|gb|EFB73053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Providencia rustigianii DSM 4541] Length = 249 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 4/168 (2%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMVGKARIHLAAQGL 102 L L N + L E I+ + S NG SI V + L L Sbjct: 19 CDNQLLLSDLSQRQSNEVLAVLQEHGIEAQRKQDSKNGDSIRVSPDDFVISVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162 PS F + + + + +E + +++ +I +V ARVH+ P G Sbjct: 79 PSKGPVEIIHAFPGDS-LVASPQAERTRVLSLIEQRLEQSLLTIPHVVNARVHVSYPVAG 137 Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + +S++ + N I+ + + +V+V+ Sbjct: 138 NGPIKPVQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 185 >gi|331664417|ref|ZP_08365323.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli TA143] gi|284922795|emb|CBG35883.1| type III secretion system protein [Escherichia coli 042] gi|331058348|gb|EGI30329.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli TA143] Length = 244 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|62085059|gb|AAX62924.1| putative type III secretion apparatus lipoprotein [Escherichia coli] gi|323966646|gb|EGB62078.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli M863] gi|323978527|gb|EGB73609.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli TW10509] gi|327251607|gb|EGE63293.1| hypothetical protein ECSTEC7V_3457 [Escherichia coli STEC_7v] Length = 244 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|218706353|ref|YP_002413872.1| putative type III secretion system lipoprotein EprK [Escherichia coli UMN026] gi|293406346|ref|ZP_06650272.1| lipoprotein prgK [Escherichia coli FVEC1412] gi|300898076|ref|ZP_07116444.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 198-1] gi|218433450|emb|CAR14352.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli UMN026] gi|291426352|gb|EFE99384.1| lipoprotein prgK [Escherichia coli FVEC1412] gi|300358214|gb|EFJ74084.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 198-1] Length = 244 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|293416099|ref|ZP_06658739.1| type III secretion protein SctJ [Escherichia coli B185] gi|291432288|gb|EFF05270.1| type III secretion protein SctJ [Escherichia coli B185] Length = 244 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 6/197 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 G K SV+ + I+ + + ++ +++V+ S + + Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQ 194 Query: 221 EMERNILGKSLSIVQAI 237 I + +A+ Sbjct: 195 APTNEISEPVFAYDKAM 211 >gi|194350711|gb|ACF53786.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis] Length = 128 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 R+ G ++ + + + +A L A GLP S + E+F K + T + + A Sbjct: 1 RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 59 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193 L E+ T+ I G++ ARVH+V+P+ + + +A+V I+ E IR Sbjct: 60 LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 119 Query: 194 LVAAAVPNL 202 +VA+++P L Sbjct: 120 MVASSIPGL 128 >gi|15803380|ref|NP_289413.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 EDL933] gi|15832970|ref|NP_311743.1| EprK [Escherichia coli O157:H7 str. Sakai] gi|168747678|ref|ZP_02772700.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4113] gi|168753782|ref|ZP_02778789.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4401] gi|168759972|ref|ZP_02784979.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4501] gi|168766837|ref|ZP_02791844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4486] gi|168775721|ref|ZP_02800728.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4196] gi|168778858|ref|ZP_02803865.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4076] gi|168785690|ref|ZP_02810697.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC869] gi|168799977|ref|ZP_02824984.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC508] gi|195936464|ref|ZP_03081846.1| EprK [Escherichia coli O157:H7 str. EC4024] gi|208808993|ref|ZP_03251330.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4206] gi|208814265|ref|ZP_03255594.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4045] gi|208819767|ref|ZP_03260087.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4042] gi|209398387|ref|YP_002272324.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4115] gi|217327850|ref|ZP_03443933.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. TW14588] gi|254794800|ref|YP_003079637.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. TW14359] gi|256024641|ref|ZP_05438506.1| putative lipoprotein of type III secretion apparatus [Escherichia sp. 4_1_40B] gi|261226159|ref|ZP_05940440.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK2000] gi|261256586|ref|ZP_05949119.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. FRIK966] gi|300950603|ref|ZP_07164505.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 116-1] gi|300958184|ref|ZP_07170338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 175-1] gi|301026133|ref|ZP_07189607.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 196-1] gi|301643809|ref|ZP_07243846.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 146-1] gi|307139541|ref|ZP_07498897.1| putative lipoprotein of type III secretion apparatus [Escherichia coli H736] gi|331643541|ref|ZP_08344672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H736] gi|12517355|gb|AAG57972.1|AE005514_9 putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. EDL933] gi|13363188|dbj|BAB37139.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O157:H7 str. Sakai] gi|62085081|gb|AAX62944.1| putative type III secretion apparatus lipoprotein [Escherichia coli] gi|187768733|gb|EDU32577.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4196] gi|188017908|gb|EDU56030.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4113] gi|189003460|gb|EDU72446.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4076] gi|189358523|gb|EDU76942.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4401] gi|189363691|gb|EDU82110.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4486] gi|189369428|gb|EDU87844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4501] gi|189374196|gb|EDU92612.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC869] gi|189377636|gb|EDU96052.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC508] gi|208728794|gb|EDZ78395.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4206] gi|208735542|gb|EDZ84229.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4045] gi|208739890|gb|EDZ87572.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4042] gi|209159787|gb|ACI37220.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. EC4115] gi|217320217|gb|EEC28642.1| type III secretion apparatus lipoprotein EprK [Escherichia coli O157:H7 str. TW14588] gi|254594200|gb|ACT73561.1| putative lipoprotein of type III secretion apparatus [Escherichia coli O157:H7 str. TW14359] gi|299879828|gb|EFI88039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 196-1] gi|300315136|gb|EFJ64920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 175-1] gi|300450083|gb|EFK13703.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 116-1] gi|301077842|gb|EFK92648.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 146-1] gi|320189189|gb|EFW63848.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. EC1212] gi|326339070|gb|EGD62885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli O157:H7 str. 1044] gi|326343049|gb|EGD66817.1| type III secretion system BasJ [Escherichia coli O157:H7 str. 1125] gi|331037012|gb|EGI09236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H736] Length = 244 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|323935787|gb|EGB32090.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli E1520] Length = 244 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|82524583|ref|YP_406178.1| MxiJ [Shigella dysenteriae Sd197] gi|81243981|gb|ABB64690.1| MxiJ [Shigella dysenteriae Sd197] Length = 241 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 4/163 (2%) Query: 51 LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107 L L N I L NI R D G S+ V A + LP+ Sbjct: 24 LISNLSQRQANEIISVLERHNISARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPER 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 ++F + + ++ A+E + +++ SI G+++A++H+ Sbjct: 84 VDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLDDKNISS 142 Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 143 KPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|309703212|emb|CBJ02547.1| type III secretion system protein [Escherichia coli ETEC H10407] Length = 244 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L +I+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHHINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|186976174|gb|ACD01056.1| EprK [Escherichia coli O157:H7 str. EC10] Length = 244 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G SI V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|293412203|ref|ZP_06654926.1| conserved hypothetical protein [Escherichia coli B354] gi|291468974|gb|EFF11465.1| conserved hypothetical protein [Escherichia coli B354] Length = 244 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G SI V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|32307032|gb|AAP79002.1| MxiJ [Shigella flexneri] Length = 241 Score = 88.1 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103 + L L N I L NI R D G S+ V A + LP Sbjct: 20 QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++F + + ++ A+E + +++ SI G+++A++H+ Sbjct: 80 NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|331654341|ref|ZP_08355341.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli M718] gi|331047723|gb|EGI19800.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli M718] Length = 244 Score = 88.1 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 6/197 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220 G K SV+ + I+ + + ++ +++V+ S + + Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQ 194 Query: 221 EMERNILGKSLSIVQAI 237 I + +A+ Sbjct: 195 APTYEISEPVFAYEKAM 211 >gi|312171366|emb|CBX79625.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158] Length = 255 Score = 88.1 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 6/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 ++ + + + + L L S N + L + NI + N G I+V S Sbjct: 9 IVILLTAALTSGCNDEKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQSEN 68 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A + LP S+ E F S + ++ + E + ++++ I+ +V Sbjct: 69 TAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQVV 127 Query: 151 AARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+ P V+I I+ L+ ++ ++ +++ Sbjct: 128 NARVHLSYPSFNNDISAKKTVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDVLYENIS 187 Query: 209 VL 210 V+ Sbjct: 188 VV 189 >gi|292487258|ref|YP_003530130.1| lipoprotein PrgK [Erwinia amylovora CFBP1430] gi|292900370|ref|YP_003539739.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200218|emb|CBJ47346.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552677|emb|CBA19722.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430] Length = 255 Score = 87.7 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 6/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90 ++ + + + + L L S N + L + NI + N G I+V S Sbjct: 9 IVILLTAALTSGCNDEKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQSEN 68 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A + LP S+ E F S + ++ + E + ++++ I+ +V Sbjct: 69 TAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQVV 127 Query: 151 AARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 ARVH+ P + V+I I+ L+ ++ ++ +++ Sbjct: 128 NARVHLSYPSFNNDISAKKSVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDVLYENIS 187 Query: 209 VL 210 V+ Sbjct: 188 VV 189 >gi|213027569|ref|ZP_03342016.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 204 Score = 87.3 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 6/179 (3%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93 + +L L+ N + L NI+ +I G SI+V A Sbjct: 9 FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 + LP ++F + + ++ A+E + +++Q++ G+++AR Sbjct: 69 VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127 Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 VHI D G + S + S I+ + + ++D +++V+ Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 186 >gi|170698158|ref|ZP_02889237.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] gi|170136923|gb|EDT05172.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia ambifaria IOP40-10] Length = 280 Score = 86.9 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 6/177 (3%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARI 95 +++ H L L S N + L +I + S+ G S + V + + Sbjct: 12 IVCLLSACHQQALLHGLSESQANEVVALLQAHDITVQKSNQGKSGYMVDVEQTDFPASVD 71 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 L LPS + F + + ++ + A+E + + + ++ +V+ARV Sbjct: 72 LLEKYNLPSPPRVEIDQAFPSDS-LVSSPQAEQARLLSAVEQRLEQNLSAMHDVVSARVQ 130 Query: 156 IVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 + P K S +I ++ V + ++D D++V+ Sbjct: 131 VSYPLQQTDLIKSEPHMHVSALITYRGNVDPAMLVSEVKRFVKNSFASIDYDDISVI 187 >gi|74314938|ref|YP_313356.1| MxiJ [Shigella sonnei Ss046] gi|2497731|sp|Q55288|MXIJ_SHISO RecName: Full=Lipoprotein mxiJ; Flags: Precursor gi|829066|dbj|BAA09148.1| ORF8 [Shigella sonnei] gi|73858415|gb|AAZ91121.1| MxiJ [Shigella sonnei Ss046] gi|323166429|gb|EFZ52194.1| hypothetical protein SS53G_3273 [Shigella sonnei 53G] Length = 241 Score = 86.9 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103 + L L N I L NI R D G S+ V A + LP Sbjct: 20 QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++F + + ++ A+E + +++ SI G+++A++H+ Sbjct: 80 NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|293416340|ref|ZP_06658979.1| lipoprotein prgK [Escherichia coli B185] gi|291431696|gb|EFF04679.1| lipoprotein prgK [Escherichia coli B185] Length = 250 Score = 86.9 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 6/182 (3%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90 + F+ ++ NL +L+ N + L + NI DNG S++V Sbjct: 6 LFFLLVLTCLSGCKEKNLLQELDQYQANEVISLLQQHNIRADKIDNGKKGFSVTVAEPDF 65 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A + LP ++F + + ++ A+E + +++Q++ GI+ Sbjct: 66 TAAVYWVKVYELPPRPRVEIAQMFPAD-ALVSSPRAEKARLYSAIEQRLEQSLQTLPGII 124 Query: 151 AARVHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVT 208 +ARVHI D G + S + + I+ + + N++ +++ Sbjct: 125 SARVHISYDIDAGESGRPSVPVHLSALAVYERGTPLGLQISDIKRFLKNSFANVEYDNIS 184 Query: 209 VL 210 V+ Sbjct: 185 VV 186 >gi|13449086|ref|NP_085302.1| Type III secretion protein [Shigella flexneri 5a] gi|31983564|ref|NP_858272.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|547955|sp|Q06081|MXIJ_SHIFL RecName: Full=Lipoprotein mxiJ; Flags: Precursor gi|13310634|gb|AAK18458.1|AF348706_147 Type III secretion protein [Shigella flexneri 5a] gi|152767|gb|AAA26532.1| lipoprotein [Shigella flexneri] gi|12329083|emb|CAC05814.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri] gi|18462556|gb|AAL72328.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603894|gb|ADA76877.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery [Shigella flexneri 2002017] gi|333011811|gb|EGK31212.1| hypothetical protein SFK227_5445 [Shigella flexneri K-227] gi|333011866|gb|EGK31259.1| hypothetical protein SFK227_5394 [Shigella flexneri K-227] gi|333020368|gb|EGK39632.1| hypothetical protein SFK304_1151 [Shigella flexneri K-304] Length = 241 Score = 86.9 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103 + L L N I L NI R D G S+ V A + LP Sbjct: 20 QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++F + + ++ A+E + +++ SI G+++A++H+ Sbjct: 80 NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|187734478|ref|YP_001883201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella boydii CDC 3083-94] gi|194435204|ref|ZP_03067432.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella dysenteriae 1012] gi|187426974|gb|ACD06249.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella boydii CDC 3083-94] gi|194416548|gb|EDX32689.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Shigella dysenteriae 1012] Length = 241 Score = 86.9 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103 + L L N I L NI R D G S+ V A + LP Sbjct: 20 QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 + ++F + + ++ A+E + +++ SI G+++A++H+ Sbjct: 80 NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + + I I+ + ++ +++V+ Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185 >gi|284007659|emb|CBA73356.1| type III secretion system lipoprotein YscJ,HrcJ,EscJ,PscJ [Arsenophonus nasoniae] Length = 237 Score = 86.9 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 5/165 (3%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105 + L L ++ N + L + +I S G I+V + A L LPS Sbjct: 20 EALLNSLTITQANEVLAVLQKHHITVSKSAQGKGLYKINVAKEDLPAAVQLLQEYQLPSP 79 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165 +LF + + +++ + +E + +++ ++ I ARVH+ P + R Sbjct: 80 ERLEISQLFPAD-ALVNSPQIEKARLISGIEQRLEQSLMALDKIADARVHLSYPIAANNR 138 Query: 166 KIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209 + ++ + I+ + A+ L+ +TV Sbjct: 139 SQAPMKASVIVFYHDENQDIDELKLGIKAFIKNAISELEPQYITV 183 >gi|293449177|ref|ZP_06663598.1| type III secretion protein SctJ [Escherichia coli B088] gi|291322267|gb|EFE61696.1| type III secretion protein SctJ [Escherichia coli B088] Length = 244 Score = 86.9 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GI+++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLTVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184 >gi|257484919|ref|ZP_05638960.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 145 Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 15/160 (9%) Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A G ++ RGD++++ ++ F + + VG + + Sbjct: 1 AVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAVGVIFILI 53 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 L LR + K + G + ND ++L + Sbjct: 54 LVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSILLPSP-- 111 Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ + R A+++++W ++ Sbjct: 112 ------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 145 >gi|300936210|ref|ZP_07151146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 21-1] gi|300458667|gb|EFK22160.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 21-1] Length = 244 Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G SI V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A++ + ++++ + GIV++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIKQRLEQSLKIMDGIVSSRVHVSYDVDT 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184 >gi|323226606|gb|EGA10809.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 134 Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L G P + ++F ++ ++ E I + + G++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123 Query: 151 AARVHIVMP 159 A+V I +P Sbjct: 124 NAKVTIALP 132 >gi|220915860|ref|YP_002491164.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953714|gb|ACL64098.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 239 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 10/171 (5%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLP 103 + L L+ N + VAL E I + G + V ++ +AR LA + LP Sbjct: 20 EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLP 79 Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163 +G++ S T+ + + AL GE+AR+I++I G+V ARVH+ +P Sbjct: 80 RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138 Query: 164 FRKIGARPTASVMIRAINPSVYKSA----EAIRHLVAAAVPNLDMGDVTVL 210 FR + ++ + + +R LVA A LD V+V+ Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAAAVSVV 189 >gi|323173915|gb|EFZ59544.1| hypothetical protein ECLT68_2234 [Escherichia coli LT-68] Length = 244 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GI+++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ ++ V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENIYVV 184 >gi|238759401|ref|ZP_04620566.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae ATCC 35236] gi|238702428|gb|EEP94980.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae ATCC 35236] Length = 247 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 6/171 (3%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQ 100 + L +L N + L E ++ +NG +SI V S A L Sbjct: 17 SGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFVTAVDLLRLY 76 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 LPS S + F + + + + +E + +++ +I G+V ARVH+ P Sbjct: 77 NLPSKESVEIIQAFPGDS-LVASPQAERSRLLSLIEQRLEQSLLTIPGVVNARVHVSYP- 134 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 + ++ S ++ K + I+ + + +V+V+ Sbjct: 135 LSGNNRVKQPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185 >gi|45504782|gb|AAS66872.1| PrgK [Sodalis glossinidius] Length = 242 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 6/177 (3%) Query: 39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARI 95 +++ + L L+ N + L NI +D +G S+++ + A Sbjct: 2 MIAMLSACKEEPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVDLPAAVD 61 Query: 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155 L +PS ++F + + ++ A+E + +++Q + G+V ARVH Sbjct: 62 LLRTYQVPSPPRMEIAQMFPGDS-LVSSPRAEKARLYSAIEQRLEQSLQVLEGVVNARVH 120 Query: 156 IVMP-DMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210 + D G + S ++ S ++ + + + ++V+ Sbjct: 121 VSYDIDAGENGRAPRPVHLSALVSYEPDSDPALLIGDVKRFLKNSFAEVAYEHISVV 177 >gi|157157566|ref|YP_001464192.1| type III secretion apparatus lipoprotein EprK [Escherichia coli E24377A] gi|191166008|ref|ZP_03027844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli B7A] gi|209920309|ref|YP_002294393.1| putative lipoprotein of type III secretion apparatus [Escherichia coli SE11] gi|218555405|ref|YP_002388318.1| putative Type III secretion system lipoprotein EprK [Escherichia coli IAI1] gi|218696453|ref|YP_002404120.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli 55989] gi|256019349|ref|ZP_05433214.1| Putative Type III secretion system lipoprotein EprK [Shigella sp. D9] gi|260856970|ref|YP_003230861.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O26:H11 str. 11368] gi|260869536|ref|YP_003235938.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O111:H- str. 11128] gi|300815719|ref|ZP_07095943.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 107-1] gi|300820651|ref|ZP_07100802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 119-7] gi|300906610|ref|ZP_07124301.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 84-1] gi|301302998|ref|ZP_07209125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 124-1] gi|309793911|ref|ZP_07688336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 145-7] gi|331678837|ref|ZP_08379511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H591] gi|332280462|ref|ZP_08392875.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9] gi|71388150|gb|AAZ31284.1| EprK [Escherichia coli] gi|157079596|gb|ABV19304.1| type III secretion apparatus lipoprotein EprK [Escherichia coli E24377A] gi|190903956|gb|EDV63669.1| type III secretion apparatus lipoprotein EprK [Escherichia coli B7A] gi|209913568|dbj|BAG78642.1| putative lipoprotein of type III secretion apparatus [Escherichia coli SE11] gi|218353185|emb|CAU99067.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli 55989] gi|218362173|emb|CAQ99786.1| Putative Type III secretion system lipoprotein EprK [Escherichia coli IAI1] gi|257755619|dbj|BAI27121.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O26:H11 str. 11368] gi|257765892|dbj|BAI37387.1| type III secretion system lipoprotein precursor EprK [Escherichia coli O111:H- str. 11128] gi|300401649|gb|EFJ85187.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 84-1] gi|300526915|gb|EFK47984.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 119-7] gi|300531648|gb|EFK52710.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 107-1] gi|300841662|gb|EFK69422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 124-1] gi|308122318|gb|EFO59580.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 145-7] gi|315256723|gb|EFU36691.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 85-1] gi|320202498|gb|EFW77068.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli EC4100B] gi|323154782|gb|EFZ40979.1| hypothetical protein ECEPECA14_3340 [Escherichia coli EPECa14] gi|323180296|gb|EFZ65848.1| hypothetical protein ECOK1180_0977 [Escherichia coli 1180] gi|323183404|gb|EFZ68801.1| hypothetical protein ECOK1357_3182 [Escherichia coli 1357] gi|324021198|gb|EGB90417.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli MS 117-3] gi|324119892|gb|EGC13771.1| YscJ/HrcJ family protein type III secretion lipoprotein [Escherichia coli E1167] gi|331073667|gb|EGI44988.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Escherichia coli H591] gi|332102814|gb|EGJ06160.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9] Length = 244 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 P + ++ + ++ A+E + ++++ + GI+++RVH+ D Sbjct: 76 P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN 134 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 G K SV+ + I+ + + ++ +++V+ Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184 >gi|330953274|gb|EGH53534.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 130 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Query: 30 LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86 ++ +++ A + + +LY L + N + L I ++ DNG + V Sbjct: 7 VLRLLIVAALASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65 Query: 87 SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146 +A L GLP S ++ E+F K N + + V AL E++ T+ I Sbjct: 66 EKRFAEAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124 Query: 147 SGIVAA 152 GI++A Sbjct: 125 DGILSA 130 >gi|226326448|ref|ZP_03801966.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198] gi|225205231|gb|EEG87585.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198] Length = 248 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 5/181 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90 ML + +L L ++ L + I + G +SV V Sbjct: 1 MLLFCLVSLLTGCKEQSLLTGLNQRQATQVQAVLQKHQITSTQTALGKGLFDVSVKKEDV 60 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150 A L LPS++ ++F + + ++ + A+E + +++ +I ++ Sbjct: 61 AVAIQILEQYQLPSNTRVEITQIFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIESVI 119 Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209 ARVHI P S R I ++++ + + E +R + + +++ ++TV Sbjct: 120 DARVHISYPISPSERIIPPPHASAIIFYEDSVPDAEQLGEDVRAFIHNSFNDMNEDNITV 179 Query: 210 L 210 L Sbjct: 180 L 180 >gi|213160801|ref|ZP_03346511.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 233 Score = 85.4 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 12/196 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 4 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 63 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRK 166 ++F + + ++ A+E + +++Q++ G+++ARVHI D G + Sbjct: 64 VEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGR 122 Query: 167 IGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 S + S I+ + + ++D +++V+ L+ + Sbjct: 123 PPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV------LSERSDAQL 176 Query: 226 ILGKSLSIVQAIQHEI 241 + + Sbjct: 177 QAPGTPVKRNSFATSW 192 >gi|323211177|gb|EFZ96024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 230 Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 3/137 (2%) Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134 + ++G ++ V S A L G P + ++F ++ ++ Sbjct: 30 KQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFL 88 Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRH 193 E I + + G++ A+V I +P + + +V I+ ++ I+ Sbjct: 89 KEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKD 147 Query: 194 LVAAAVPNLDMGDVTVL 210 L+ ++P L +++L Sbjct: 148 LIEMSIPGLQYSKISIL 164 >gi|310823558|ref|YP_003955916.1| type III secretion lipoprotein, yscj/flif family [Stigmatella aurantiaca DW4/3-1] gi|309396630|gb|ADO74089.1| Type III secretion lipoprotein, YscJ/FliF family [Stigmatella aurantiaca DW4/3-1] Length = 267 Score = 84.6 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 9/165 (5%) Query: 54 KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108 L+ N + L E ++ R SI V + A LA GLP + Sbjct: 27 GLDERQANELQTVLLERGLEARKVPEAGKKPSWSIEVDEAQASAAVRILAELGLPRPVAE 86 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168 +G ++F + T +++ R R LE I +T+Q + G++ ARVH+++P Sbjct: 87 TGCDVF-GGGALLRTPIEEQLCRTRVLERGIEKTLQGMEGVLVARVHLMVPPPARPGHAP 145 Query: 169 ARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + AS ++R + +S + ++ L+A V L V++L Sbjct: 146 SAAKASALLRTASGQADRLRQSQDRLQALIAGGVEGLSPEAVSLL 190 >gi|213613043|ref|ZP_03370869.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 161 Score = 84.6 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 19/177 (10%) Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +I + A G + +RGDT+ + + F Sbjct: 4 PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQ 59 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 ++ A +L+ ++ L A+ + ++ + + Sbjct: 60 LLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------QETEE 107 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 108 AVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 161 >gi|213855154|ref|ZP_03383394.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 160 Score = 84.6 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 19/177 (10%) Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +I + A G + +RGDT+ + + F Sbjct: 3 PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQ 58 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 ++ A +L+ ++ L A+ + ++ + + Sbjct: 59 LLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------QETEE 106 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 107 AVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 160 >gi|167566213|ref|ZP_02359129.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia oklahomensis EO147] gi|167573323|ref|ZP_02366197.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia oklahomensis C6786] Length = 298 Score = 84.6 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L N+ R D G ++SV A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHNLAVRKEDLGKTGYAVSVEQVDFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV I P Sbjct: 79 PSQARVQIGQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQISYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNQDILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|108759060|ref|YP_630659.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Myxococcus xanthus DK 1622] gi|108462940|gb|ABF88125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Myxococcus xanthus DK 1622] Length = 272 Score = 83.8 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 15/210 (7%) Query: 55 LEVSDVNRISVALSEANIDFRISDNGS------SISVPSSMVGKARIHLAAQGLPSSSSN 108 L +D N I V LS+ I+ + I+VP + +A L LP Sbjct: 29 LSEADANEIYVLLSKNGINAKKEKEEGGNEVRFMITVPKADAAQAAELLKLNSLPRP-VE 87 Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RK 166 G F K S T+ + ++A+ GE++ + I G++ AR +++P+ + Sbjct: 88 KGLAHFAK-GSMVPTATEERAMLLKAMGGEVSNALNQIDGVLEARAIVMIPENNDLTQPE 146 Query: 167 IGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223 P+ASV I+ ++ A AVP L VTVL + L + Sbjct: 147 NKPMPSASVFIKYRPGEGGKPPIDTAVVQQFAATAVPELKASAVTVL--MTQALPPSAET 204 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFL 253 + + A Sbjct: 205 DAESRLQDVLGLRMTAASASQFKVMFAGAF 234 >gi|194350713|gb|ACF53787.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis] Length = 120 Score = 83.8 bits (205), Expect = 8e-14, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 + + + + +A L A GLP S + E+F K + T + + AL E+ T Sbjct: 1 LVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEAT 59 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPN 201 + I G++ ARVH+V+P+ + + +A+V I+ E IR +VA+++P Sbjct: 60 LAQIDGVLVARVHVVLPERIAPGEPVHPASAAVFIKYRAELEPDGMEQRIRRMVASSIPG 119 Query: 202 L 202 L Sbjct: 120 L 120 >gi|326634131|pdb|2Y9J|Y Chain Y, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634132|pdb|2Y9J|Z Chain Z, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634133|pdb|2Y9J|AA Chain a, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634134|pdb|2Y9J|BB Chain b, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634135|pdb|2Y9J|CC Chain c, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634136|pdb|2Y9J|DD Chain d, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634137|pdb|2Y9J|EE Chain e, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634138|pdb|2Y9J|FF Chain f, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634139|pdb|2Y9J|GG Chain g, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634140|pdb|2Y9J|HH Chain h, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634141|pdb|2Y9J|II Chain i, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634142|pdb|2Y9J|JJ Chain j, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634143|pdb|2Y9J|KK Chain k, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634144|pdb|2Y9J|LL Chain l, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634145|pdb|2Y9J|MM Chain m, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634146|pdb|2Y9J|NN Chain n, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634147|pdb|2Y9J|OO Chain o, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634148|pdb|2Y9J|PP Chain p, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634149|pdb|2Y9J|QQ Chain q, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634150|pdb|2Y9J|RR Chain r, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634151|pdb|2Y9J|SS Chain s, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634152|pdb|2Y9J|TT Chain t, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634153|pdb|2Y9J|UU Chain u, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution gi|326634154|pdb|2Y9J|VV Chain v, Three-Dimensional Model Of Salmonella's Needle Complex At Subnanometer Resolution Length = 170 Score = 83.4 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 6/165 (3%) Query: 51 LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107 L L+ N + L NI+ +I G SI+V A + LP Sbjct: 3 LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 62 Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRK 166 ++F + + ++ A+E + +++Q++ G+++ARVHI D G + Sbjct: 63 VEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGR 121 Query: 167 IGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 S + S I+ + + ++D +++V+ Sbjct: 122 PPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 166 >gi|330940717|gb|EGH43725.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 104 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 F ++ + + R + L + + + A + P Y LY L D +I L+ Sbjct: 25 SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84 Query: 69 EANIDFRISDNGSSISVPSS 88 ANI++ + N ++ V S Sbjct: 85 AANINYTVEPNSGALLVKSD 104 >gi|213028051|ref|ZP_03342498.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 156 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 19/175 (10%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 + +I + A G + +RGDT+ + + F ++ Sbjct: 1 TADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLL 56 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 A +L+ ++ L A+ + ++ + + Sbjct: 57 AAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------QETEEAV 104 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 ++D R R+ + V Q R+ M + + A ++R+W ++ E Sbjct: 105 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 156 >gi|167577420|ref|ZP_02370294.1| type III secretion system BasJ [Burkholderia thailandensis TXDOH] Length = 234 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|289803181|ref|ZP_06533810.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 210 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 3/136 (2%) Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 ++G ++ V S A L G P + ++F ++ ++ Sbjct: 11 KEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLK 69 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHL 194 E I + + G++ A+V I +P + + +V I+ ++ I+ L Sbjct: 70 EQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDL 128 Query: 195 VAAAVPNLDMGDVTVL 210 + ++P L +++L Sbjct: 129 IEMSIPGLQYSKISIL 144 >gi|217425204|ref|ZP_03456699.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] gi|217391809|gb|EEC31836.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 576] Length = 315 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|76819532|ref|YP_335750.1| Type III secretion system protein [Burkholderia pseudomallei 1710b] gi|254264263|ref|ZP_04955128.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] gi|76584005|gb|ABA53479.1| Type III secretion system protein [Burkholderia pseudomallei 1710b] gi|254215265|gb|EET04650.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1710a] Length = 315 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|53716312|ref|YP_106138.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344] gi|124381716|ref|YP_001025850.1| type III secretion system BasJ [Burkholderia mallei NCTC 10229] gi|126447771|ref|YP_001077934.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247] gi|52422282|gb|AAU45852.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344] gi|126240625|gb|ABO03737.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247] gi|261826463|gb|ABN00251.2| type III secretion system BasJ [Burkholderia mallei NCTC 10229] Length = 316 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|83716456|ref|YP_439020.1| type III secretion system BasJ [Burkholderia thailandensis E264] gi|257142128|ref|ZP_05590390.1| type III secretion system BasJ [Burkholderia thailandensis E264] gi|83650281|gb|ABC34345.1| type III secretion system BasJ [Burkholderia thailandensis E264] Length = 315 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|134281957|ref|ZP_01768663.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] gi|134246486|gb|EBA46574.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 305] Length = 316 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167615572|ref|ZP_02384207.1| type III secretion system BasJ [Burkholderia thailandensis Bt4] Length = 235 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|53722571|ref|YP_111556.1| Type III secretion system protein [Burkholderia pseudomallei K96243] gi|126456880|ref|YP_001076127.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 1106a] gi|254186868|ref|ZP_04893384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|254193641|ref|ZP_04900073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] gi|254301444|ref|ZP_04968888.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|52212985|emb|CAH39023.1| Type III secretion system protein [Burkholderia pseudomallei K96243] gi|126230648|gb|ABN94061.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 1106a] gi|157810759|gb|EDO87929.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 406e] gi|157934552|gb|EDO90222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pasteur 52237] gi|169650392|gb|EDS83085.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei S13] Length = 315 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|226196079|ref|ZP_03791665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] gi|225931972|gb|EEH27973.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei Pakistan 9] Length = 315 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|126442499|ref|YP_001063176.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Burkholderia pseudomallei 668] gi|126221990|gb|ABN85495.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei 668] Length = 315 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|313634363|gb|EFS00960.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067] gi|313639038|gb|EFS04028.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171] Length = 160 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 70/169 (41%), Gaps = 16/169 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNR 62 + ++ + + + ++ + ++ ++N+P + LY L + + Sbjct: 1 MAKIKTMYSKLKNWHK------GAIFVGLFVVVTVFLLYLNTPKTEITLYKNLSETSQQQ 54 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L++ +D+ + +G+ I V + R A G+P + G ++ +S G Sbjct: 55 VTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADLGIPYTG-QDGNDILLN-SSLGA 111 Query: 123 TS----FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +++ LE EI ++ + + +A V + +P+ S + Sbjct: 112 SEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEE 158 >gi|167923356|ref|ZP_02510447.1| type III secretion system BasJ [Burkholderia pseudomallei BCC215] Length = 238 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167908415|ref|ZP_02495620.1| type III secretion system BasJ [Burkholderia pseudomallei NCTC 13177] Length = 233 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167820398|ref|ZP_02452078.1| type III secretion system BasJ [Burkholderia pseudomallei 91] Length = 226 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167743223|ref|ZP_02415997.1| type III secretion system BasJ [Burkholderia pseudomallei 14] Length = 225 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|237507749|ref|ZP_04520464.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] gi|234999954|gb|EEP49378.1| type III secretion system protein [Burkholderia pseudomallei MSHR346] Length = 315 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|67639417|ref|ZP_00438277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia mallei GB8 horse 4] gi|238519955|gb|EEP83420.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia mallei GB8 horse 4] Length = 264 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167850225|ref|ZP_02475733.1| type III secretion system BasJ [Burkholderia pseudomallei B7210] Length = 233 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167898828|ref|ZP_02486229.1| type III secretion system BasJ [Burkholderia pseudomallei 7894] Length = 232 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167828770|ref|ZP_02460241.1| type III secretion system BasJ [Burkholderia pseudomallei 9] Length = 230 Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|213426025|ref|ZP_03358775.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 205 Score = 80.0 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 3/136 (2%) Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 ++G ++ V S A L G P + ++F ++ ++ Sbjct: 6 KEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLK 64 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHL 194 E I + + G++ A+V I +P + + +V I+ ++ I+ L Sbjct: 65 EQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDL 123 Query: 195 VAAAVPNLDMGDVTVL 210 + ++P L +++L Sbjct: 124 IEMSIPGLQYSKISIL 139 >gi|291562020|emb|CBL40835.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [butyrate-producing bacterium SS3/4] Length = 110 Score = 80.0 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 L + ++ + I ++A+ ++ + Y L+ + D + Sbjct: 6 QNLKEAWQKMPGKTKKMIAVIAAGTIILAAAGLLVLNIGTKKGYSTLFTGMSSDDAQAVV 65 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 L + +D+R +D S+ V S V K R L ++G P Sbjct: 66 SLLQDEGVDYRYNDKNGSVQVMSDTVDKTRAELLSKGYPKK 106 >gi|227357604|ref|ZP_03841957.1| type III secretion system protein [Proteus mirabilis ATCC 29906] gi|227162314|gb|EEI47318.1| type III secretion system protein [Proteus mirabilis ATCC 29906] Length = 250 Score = 80.0 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 5/171 (2%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQ 100 N +L L I L + I + G ISV +G A L Sbjct: 19 NGCKDQSLLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEY 78 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 LP+ S +LF + + ++ + A+E + +++ +I ++ ARVH+ P Sbjct: 79 QLPTISRIEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPL 137 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 + R ++++ + +R + A ++D ++TVL Sbjct: 138 SSNDRITPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188 >gi|167724247|ref|ZP_02407483.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Burkholderia pseudomallei DM98] gi|167915509|ref|ZP_02502600.1| type III secretion system BasJ [Burkholderia pseudomallei 112] Length = 222 Score = 80.0 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|167840188|ref|ZP_02466872.1| type III secretion system BasJ [Burkholderia thailandensis MSMB43] Length = 216 Score = 80.0 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102 + L L N + L ++ R D G ++SV + A L L Sbjct: 19 CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78 Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161 PS + + F + + ++ + A+E + + + ++ +V+ARV + P Sbjct: 79 PSQARVQIAQAFPAD-ALVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137 Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 K AR + ++ N ++ V + N+D D++V+ Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187 >gi|197286530|ref|YP_002152402.1| type III secretion system protein [Proteus mirabilis HI4320] gi|194684017|emb|CAR45314.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 250 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 5/171 (2%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQ 100 N +L L I L + I + G ISV +G A L Sbjct: 19 NGCKDQSLLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEY 78 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 LP+ S +LF + + ++ + A+E + +++ +I ++ ARVH+ P Sbjct: 79 QLPTISRIEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPL 137 Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 + R ++++ + +R + A ++D ++TVL Sbjct: 138 SSNDRITPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188 >gi|330899426|gb|EGH30845.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 139 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 49/154 (31%), Gaps = 15/154 (9%) Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 RGD++++ ++ F + F ++ V ++ L++ F L + Sbjct: 1 SRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIFILILVFGVLRPV 56 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 K+ G G + ND ++L + Sbjct: 57 LNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSILLPSP-------- 105 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ + R A+++++W ++ Sbjct: 106 TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 139 >gi|315301965|ref|ZP_07872961.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] gi|313629672|gb|EFR97809.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596] Length = 159 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 69/169 (40%), Gaps = 16/169 (9%) Query: 4 LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNR 62 + ++ + + + ++ + ++ ++N P + LY L + + Sbjct: 1 MAKIKTMYSKLKNWHK------GAIFVGLFVVVTVFLLYLNMPKTEITLYKNLSETSQQQ 54 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 ++ L++ +D+ + +G+ I V + R A G+P + G ++ +S G Sbjct: 55 VTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADLGIPYTG-QDGNDILLN-SSLGA 111 Query: 123 TS----FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167 + +++ LE EI ++ + + +A V + +P+ S + Sbjct: 112 SEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEE 158 >gi|34497875|ref|NP_902090.1| cell invasion protein [Chromobacterium violaceum ATCC 12472] gi|34103731|gb|AAQ60092.1| cell invasion protein [Chromobacterium violaceum ATCC 12472] Length = 242 Score = 78.4 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 6/172 (3%) Query: 44 NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQ 100 + +L L+ N + L NI+ +D G + I+V + A L A Sbjct: 16 SGCQQKDLLKGLDQQQANEVIAVLQRHNIEADKADRGKAGFSIAVAPADFAAAVDWLRAY 75 Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP- 159 LPS ++F + + ++ A+E + +++Q++ GI++ARVH+ Sbjct: 76 DLPSRPRMEVAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMDGILSARVHVSYDL 134 Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210 D G + S + + I+ + + +D +++V+ Sbjct: 135 DSGEAGRASQPMHISALAVYDRDVDAAAMINNIKRFLKNSFAEVDYDNISVV 186 >gi|1772456|dbj|BAA14027.1| FliF [Shigella boydii] Length = 220 Score = 76.9 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 23/202 (11%) Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 ++RLS+AVVVN L + + + +I + A G + +RGD++ + + F Sbjct: 42 VQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 97 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473 + ++ A +L+ L+ L A+R Sbjct: 98 NSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKA 153 Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533 V ++ ++ ++D R R+ + V Q R+ Sbjct: 154 VQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQRLGTEVMSQ---RIRE 198 Query: 534 MIEINEERFAKILRKWARSEIE 555 M + + A ++R+W ++ E Sbjct: 199 MSDNDPRVVALVIRQWINNDHE 220 >gi|157781880|gb|ABV72266.1| FliF [Azospirillum brasilense] Length = 77 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + ++ +LG R+ + V L+ I F+ +++P + LY +L+ ++ I+ Sbjct: 1 MNNLLQTLRNLGPARLAAIGGVGLLLIGFFVYLMTRLSTPEMELLYAELQPTEAAAIAKK 60 Query: 67 LSEANIDFRISDNGSSI 83 L EA + F + G+ I Sbjct: 61 LEEAKVPFTVDKTGTKI 77 >gi|207111036|ref|ZP_03245198.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 69 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%) Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 +I +P V + RI LA+QG+P +S G+E+FD + FG T F Q I +RA+EGE++R Sbjct: 2 TILIPKDKVYEERITLASQGIPKTS-KVGFEIFDTKD-FGATDFDQNIKLIRAIEGELSR 59 Query: 142 TIQSISGI 149 TI+S++ I Sbjct: 60 TIESLNPI 67 >gi|12056610|gb|AAG47968.1|AF312695_8 FliF [Pseudomonas fluorescens] Length = 97 Score = 75.3 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67 L F ++ + + R + L + + + A + P Y LY L D ++ L Sbjct: 25 LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84 Query: 68 SEANIDFRISDNG 80 + A+I + + N Sbjct: 85 ASADIPYTVEPNS 97 >gi|73532528|dbj|BAE19822.1| flagellar M-ring protein [Edwardsiella tarda] Length = 125 Score = 74.6 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 299 TSQPESAVTVEQNMPHVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 P S S +++E +NYE++ T +ER Sbjct: 4 PRSAXGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDETTNYEVDRTIRHTQARAGNIER 63 Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416 LS+AVVVN + + +IN +V A G + RGDT+++ + F Sbjct: 64 LSVAVVVNYAT----DTNGKEIALSQEKMDQINNLVREAMGFSQSRGDTLSVVNTPFNSV 119 Query: 417 QL 418 + Sbjct: 120 ED 121 >gi|289809530|ref|ZP_06540159.1| pathogenicity 1 island effector protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 176 Score = 74.6 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 6/156 (3%) Query: 60 VNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116 N + L NI+ +I G SI+V A + LP ++F Sbjct: 1 ANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPA 60 Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASV 175 + + ++ A+E + +++Q++ G+++ARVHI D G + S Sbjct: 61 DS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSA 119 Query: 176 MIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 + S I+ + + ++D +++V+ Sbjct: 120 LAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 155 >gi|213618539|ref|ZP_03372365.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 146 Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 4/138 (2%) Query: 37 MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93 + +L L+ N + L NI+ +I G SI+V A Sbjct: 9 FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68 Query: 94 RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153 + LP ++F + + ++ A+E + +++Q++ G+++AR Sbjct: 69 VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127 Query: 154 VHIVMPDMGSFRKIGARP 171 VHI +P Sbjct: 128 VHISYDIDAGENGRPPKP 145 >gi|124382226|ref|YP_001025747.1| type III secretion inner membrane protein SctJ [Burkholderia mallei NCTC 10229] Length = 174 Score = 70.7 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181 T + + + + E++ T+ I G+V ARVHIV+P+ ++ +ASV I+ Sbjct: 2 STPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRP 61 Query: 182 PSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 + + I++LV +V L +V+V Sbjct: 62 NANLATLTPQIKNLVVHSVEGLTYDEVSVT 91 >gi|323189407|gb|EFZ74688.1| hypothetical protein ECRN5871_2295 [Escherichia coli RN587/1] Length = 134 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141 ++SV +A L G P + E+ + + + E +I R Sbjct: 2 TLSVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIER 60 Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVP 200 + I G++ V + + + +A+V++ + S I++LV +V Sbjct: 61 LLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVD 115 Query: 201 NLDMGDVTVL 210 L + +++V+ Sbjct: 116 ALKLENISVV 125 >gi|255022494|ref|ZP_05294480.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208] Length = 160 Score = 69.6 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 9/134 (6%) Query: 41 FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100 + LY L + +++ L++ +D+ I +G+ I V + R A Sbjct: 27 YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTIDKSGN-ILVDEKVETLVRDKFADL 85 Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156 G+P + G ++ +S G + +++ LE EI ++ + I +A V + Sbjct: 86 GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141 Query: 157 VMPDMGSFRKIGAR 170 +P+ S + ++ Sbjct: 142 TLPESSSIFEEASQ 155 >gi|13161235|gb|AAK13520.1|AF343975_1 FliF [Treponema denticola ATCC 33520] Length = 182 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/189 (11%), Positives = 56/189 (29%), Gaps = 22/189 (11%) Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424 K + + + + + KI+ A G ++ R D++++ ++ F Sbjct: 16 KYIIKNGVIEREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LE 73 Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484 + L R +++ + +L+ F+ + R + E + Sbjct: 74 DKEYFKALQRQTIFLLSLA--GIALILLFFILYRIISREIERRKRLREEELLRQAQLERE 131 Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 D ++ + ++ ++M + E A Sbjct: 132 RMLY------------------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVAL 173 Query: 545 ILRKWARSE 553 ++R W E Sbjct: 174 LIRTWLMEE 182 >gi|322650270|gb|EFY46684.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 106 Score = 67.6 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90 I+ FF+ + +LY L + N++ L + +ID ++G ++ V S Sbjct: 6 IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64 Query: 91 GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130 A L G P + ++F ++ ++ Sbjct: 65 INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQK 103 >gi|294636868|ref|ZP_06715199.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685] gi|291089917|gb|EFE22478.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685] Length = 156 Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 21/175 (12%) Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438 + +IN +V A G + RGDT+++ + F Sbjct: 1 ALSQEKMDQINNLVREAMGFSQNRGDTLSVVNTPFNSVADNGGELP----FWQKQAFIDL 56 Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + +L+ L+ L ++ + + + Sbjct: 57 LSTLGRYLLVALVAWLLWRKLVKPMLTKQQQAAALRQQVNTSPISAQPVKQPSNEELQQR 116 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 L R+ M E + A ++R+W +E Sbjct: 117 RKLQQRTTAEAQT-----------------ERVREMAEQDPRVVALVIRQWMSTE 154 >gi|270488959|ref|ZP_06206033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] gi|270337463|gb|EFA48240.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Yersinia pestis KIM D27] Length = 157 Score = 64.2 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%) Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 N + ++ V E ++ + + G++ A V + MP M K TASV I Sbjct: 7 NQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMP-MSVDGKNPLPHTASVFI 65 Query: 178 RAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236 + +S ++ I+ LV AVP +D ++V+ + + Sbjct: 66 KYSPEVNLQSYQSQIKGLVRDAVPGIDYAKISVV------MQPANYRFSASEAEQQQGPQ 119 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268 + + + +GV V+ + Sbjct: 120 TTVQWLLRHVGMVQNMVGVAFISLIVLMFVGW 151 >gi|207110812|ref|ZP_03244974.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 82 Score = 64.2 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLD 203 ++ I+ A VHI +P F P+ASVM++ I++L+AAAVP L Sbjct: 1 LNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLT 60 Query: 204 MGDVTVLDSTGKLLTANE 221 +V +++ G+ + + Sbjct: 61 TENVKIVNENGESIGEGD 78 >gi|320103858|ref|YP_004179449.1| hypothetical protein Isop_2322 [Isosphaera pallida ATCC 43644] gi|319751140|gb|ADV62900.1| hypothetical protein Isop_2322 [Isosphaera pallida ATCC 43644] Length = 607 Score = 64.2 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 61/548 (11%), Positives = 149/548 (27%), Gaps = 32/548 (5%) Query: 17 LGRTRILILASVILVPIMLFMAA--RFFVNS---PHYDNLYVK--LEVSDVNRISVALSE 69 L + V+L + + + L+ V++ ++ LS Sbjct: 43 LSPFPLPTPIVVVLASLAVLGMVGWVIWTTKESGTPETPLFGGHRFSVAERVQVEALLST 102 Query: 70 ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129 I I +G + VP +A+ L AQ L S + S + Sbjct: 103 KAIPTAIDPDG-VVRVPLKQRLQAQELLQAQKLAPRSLEDTRRRLAQGGSIFELPEDRAR 161 Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPS--VYK 186 A E E ++ GI++ V + G + V + Sbjct: 162 RLHEAREEEARLLLEECPGILSTYVRFHLERPRGLGSSGSEPVSGFVRVEMEPDLILDPA 221 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 +A+ I ++ VP L ++ +LD+ + + ++++ + + Sbjct: 222 TADTILAILRGLVPGL--RELVLLDARTLARFEWSHDSDAPPQAIAARSDRLKPLPAQAS 279 Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306 +LA ++ S A+ +++ + + ++ + Sbjct: 280 PSLAQTHSDESQTSLANADTQTNSEVRDLQTRLARRLGWLPHAVVRVEIDPQSVGAPHSP 339 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366 + + + +L + + + + V + Sbjct: 340 DGDPKVAPSAASASSPAPTLTLNTPIRLPFANPDEAAGSGHSTASGPRYDVVVVVSPDAK 399 Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426 G D + AE+ +IV+ N R + I + + Sbjct: 400 TGGSSPGAPPDARQRLD--AEVRRIVAEEIPDNRRGAVRVEIEPTPSSPSTSSSPPPSSS 457 Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486 S + + + + + + P I+ Sbjct: 458 SSSRSSTVSGSRSP---------------LSPPSNAYPSRASSWLDHLERYAQAWPEAIA 502 Query: 487 SAVTTGLMPNDNIALD--SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544 +A+ I ++ + + + S R+ ++ + E A Sbjct: 503 AALGLAAAALGLILGWRWGRSRLRGTAGHHPNAPAPSQTELPPWERVRRIVRDHPEVAAG 562 Query: 545 ILRKWARS 552 +L +W +S Sbjct: 563 VLSRWLKS 570 >gi|330719506|gb|EGG98119.1| Flagellar M-ring protein FliF [gamma proteobacterium IMCC2047] Length = 157 Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 59/159 (37%), Gaps = 2/159 (1%) Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455 G + RGD +T+ + F+ ++ + ++V + F ++ + + L++ F+ Sbjct: 1 MGFDEARGDIVTVINAPFIPVKVEVAEEIEVPLWEQA--WFMKLVKQGLAALLVLILVFV 58 Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515 + + + + ++ + + + A + + + Sbjct: 59 VIRPIMKSLANNGQQQKALAEATARAQEAAKQAEAMANATPSQAMAMQQSAPGGGAAAMM 118 Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 S + +I+ + +R A+++++W +++ Sbjct: 119 LPGPGPGAGGMSLSNVQSVIDSDPQRAAQVVKQWVKTDE 157 >gi|238764042|ref|ZP_04624997.1| Type III secretion system apparatus lipoprotein [Yersinia kristensenii ATCC 33638] gi|238697713|gb|EEP90475.1| Type III secretion system apparatus lipoprotein [Yersinia kristensenii ATCC 33638] Length = 158 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 3/100 (3%) Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171 ELF + ++ V E ++ + + G++ A V I MP K Sbjct: 3 ELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIQADVTIAMPAPT-DGKSSVPH 60 Query: 172 TASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210 ASV I+ S I++L+ +P +D ++V+ Sbjct: 61 AASVFIKYSPEVNLLSYQPQIKNLIHDGIPGIDFSQISVV 100 >gi|167949089|ref|ZP_02536163.1| hypothetical protein Epers_22296 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 86 Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 1/73 (1%) Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS-VALSEA 70 + R L + I + L +A + P Y L+ L +R S L ++ Sbjct: 9 RRLQDNPLLRQLAVMVGIAASVALGVAVVLWSQKPSYSVLFGNLAAERCSRRSHQVLQQS 68 Query: 71 NIDFRISDNGSSI 83 ID+ + I Sbjct: 69 GIDYEVDPASGLI 81 >gi|270488958|ref|ZP_06206032.1| conserved domain protein [Yersinia pestis KIM D27] gi|270337462|gb|EFA48239.1| conserved domain protein [Yersinia pestis KIM D27] Length = 92 Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89 ++ + ++ + LY L + N++ L I+ +I +G ++V Sbjct: 7 MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65 Query: 90 VGKARIHLAAQGLPSSSSNSGYELF 114 A L G P + ELF Sbjct: 66 FINAVELLRQNGFPRQRFITVDELF 90 >gi|322632874|gb|EFY29618.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] Length = 163 Score = 58.8 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%) Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 N ++ ++ E I + + G++ A+V I +P + + Sbjct: 1 MFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSV 59 Query: 174 SVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 +V I+ ++ I+ L+ ++P L +++L Sbjct: 60 AVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 97 >gi|207110042|ref|ZP_03244204.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 74 Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 19 RTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVKLEVSDVNRISVALSEANI 72 + + + L + ++ L + + Y L+ L+ SD I L + I Sbjct: 10 KKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQI 69 Query: 73 DFRIS 77 +++S Sbjct: 70 PYKVS 74 >gi|213422413|ref|ZP_03355479.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 163 Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%) Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 N ++ ++ E I + + G++ A+V I +P + + Sbjct: 1 MFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSV 59 Query: 174 SVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210 +V I+ ++ I+ L+ ++P L +++L Sbjct: 60 AVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 97 >gi|18072081|gb|AAL58462.1|AF456769_1 putative EscJ protein [Escherichia coli] Length = 111 Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 7/112 (6%) Query: 75 RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133 + +G+ +ISV +A L G P + E+ + + + Sbjct: 2 EMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINY 60 Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 E +I R + I G++ V + + + +A+V++ + Sbjct: 61 LKEQDIERLLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNL 107 >gi|213425005|ref|ZP_03357755.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 129 Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 19/147 (12%) Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 + F ++ A +L+ ++ L A+ Sbjct: 2 VNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRRV 57 Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528 + ++ + + ++D R R+ + V Q Sbjct: 58 EEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ-- 103 Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555 R+ M + + A ++R+W ++ E Sbjct: 104 -RIREMSDNDPRVVALVIRQWMSNDHE 129 >gi|213861544|ref|ZP_03386014.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 115 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 24/115 (20%) Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------- 313 ++ ++ E Y P+ ++ S+ SE P N P Sbjct: 1 MDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIA 60 Query: 314 ------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356 + + ++ E SNYE++ T + +ER Sbjct: 61 TPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIER 115 >gi|153824291|ref|ZP_01976958.1| flagellar M-ring protein [Vibrio cholerae B33] gi|126518186|gb|EAZ75411.1| flagellar M-ring protein [Vibrio cholerae B33] Length = 131 Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 12/142 (8%) Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470 M F E ++ V + + +ALV ++ L A+++L N Sbjct: 1 MPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVI---LVLVRPAMKKLINPAADN 57 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 ++ G + G + + + N + + Sbjct: 58 DDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLKA 108 Query: 531 LLHMIEINEERFAKILRKWARS 552 + ++ E A++++ W ++ Sbjct: 109 VRALVANEPELAAQVVKNWMQN 130 >gi|14422425|dbj|BAB60832.1| eprK [Escherichia coli] Length = 178 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 3/116 (2%) Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L LP + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 4 LKIYNLP-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHV 62 Query: 157 VMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 D G K SV+ + I+ + + ++ +++V+ Sbjct: 63 SYDVDNGDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 118 >gi|323159999|gb|EFZ45963.1| lipoprotein prgK [Escherichia coli E128010] gi|323162552|gb|EFZ48402.1| lipoprotein prgK [Escherichia coli E128010] gi|323163401|gb|EFZ49228.1| lipoprotein prgK [Escherichia coli E128010] Length = 178 Score = 51.5 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 3/116 (2%) Query: 97 LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156 L LP + ++ + ++ A+E + ++++ + GI+++RVH+ Sbjct: 4 LKIYNLP-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHV 62 Query: 157 VMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210 D G K SV+ + I+ + ++ +++V+ Sbjct: 63 SYDVDNGDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNNSASVQYENISVV 118 >gi|119468195|ref|ZP_01611321.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7] gi|119448188|gb|EAW29452.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7] Length = 170 Score = 51.5 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 25 LASVILVPIMLFMAARFFVNS--PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 L V+ + I+ + + N P Y L + + D +I+ L + +++ Sbjct: 17 LLLVLGISILFAIIILKWANEDSPVYRPLIQDMRLVDSVKIADVLDQERVNYYADVKNHM 76 Query: 83 ISVPSSMVGKARIHLAAQGL 102 + V AR+ LA G+ Sbjct: 77 LYVNQEQSELARVSLAKIGI 96 >gi|296273387|ref|YP_003656018.1| integral membrane sensor signal transduction histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296097561|gb|ADG93511.1| integral membrane sensor signal transduction histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 282 Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 75/258 (29%), Gaps = 37/258 (14%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS 82 + LV I+ + +F++ P +D L+ + I L E NI I N Sbjct: 40 TFIVITLVLIIFAIVLNYFLSKPLFDPLFASDTNLEK-AIKETLHELNIPASTIQSNAQM 98 Query: 83 I---SVPSSMVGKA-RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138 + + + RI LA L YE+ ++ L+ Sbjct: 99 LEKNLKDEKDIRRLNRIKLATNELLKLYDQMEYEIKKEIGRI--------DKFEFLLDEI 150 Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 I +I I + + I V +L++ A Sbjct: 151 IENSIDKFEDIKGS-ITIENDIKNISINSDKNGFQKVF---------------DNLLSNA 194 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 + + ++ LL I K+L IV + + + NK G Sbjct: 195 IKYNCENGIIKINMQNNLLCIFNTGNVIDTKNLFIV--FEQYFQEDSNKT-----GFGLG 247 Query: 259 RSAVVAELNMDTQQIREI 276 + V + + I+ Sbjct: 248 LNIVKEFCDKNQIDIKIE 265 >gi|301336262|ref|ZP_07224464.1| type III secretion system protein [Chlamydia muridarum MopnTet14] Length = 332 Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%) Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR 192 +A + +I + + I+ A V + + A + + + +I Sbjct: 67 QAKKEQIEKDLTMFDPILQATVALSQGEETP-----AEISVILSLPYAQTLSPSLVHSIT 121 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 + +VP L +T+ D G L ++ + Sbjct: 122 DYLMRSVPGLTKEQITLSDQQGNLYSSFLEQNTT 155 >gi|15834717|ref|NP_296476.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270284883|ref|ZP_06194277.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270288911|ref|ZP_06195213.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|7190126|gb|AAF38972.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 332 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 5/99 (5%) Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187 + ++A + ++ + I+ A V + + A + + + Sbjct: 62 QSMEIQAKKEQLENDLTMFDPILQATVALSQEEDAP-----AEISVILSLPHALTLSPSL 116 Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 +I + +VP L +T+ D G L + + + Sbjct: 117 VHSITDYLMRSVPGLTKEHITLSDQQGNLYSPLLEQSDT 155 >gi|255349112|ref|ZP_05381119.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255503649|ref|ZP_05382039.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|255507328|ref|ZP_05382967.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|289525763|emb|CBJ15244.1| flagellar M-Ring Protein [Chlamydia trachomatis Sweden2] gi|296435336|gb|ADH17514.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296439053|gb|ADH21206.1| type III secretion system protein [Chlamydia trachomatis E/11023] Length = 334 Score = 48.8 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191 ++A + ++ + + ++ A V + + A + + + + +I Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQSSTLSPSLVHSI 122 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 + +VP L +T+ D G L + + N Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157 >gi|15605452|ref|NP_220238.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|3329175|gb|AAC68314.1| Flagellar M-Ring Protein [Chlamydia trachomatis D/UW-3/CX] gi|297748850|gb|ADI51396.1| FliF [Chlamydia trachomatis D-EC] gi|297749730|gb|ADI52408.1| FliF [Chlamydia trachomatis D-LC] Length = 334 Score = 48.4 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191 ++A + ++ + + ++ A V + + A + + + + +I Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 + +VP L +T+ D G L + + N Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157 >gi|237803149|ref|YP_002888343.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237805070|ref|YP_002889224.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311549|ref|ZP_05354119.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317850|ref|ZP_05359096.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|231273370|emb|CAX10285.1| flagellar M-Ring Protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274383|emb|CAX11178.1| flagellar M-Ring Protein [Chlamydia trachomatis B/Jali20/OT] gi|296436264|gb|ADH18438.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296437193|gb|ADH19363.1| type III secretion system protein [Chlamydia trachomatis G/11222] gi|296438124|gb|ADH20285.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|297140625|gb|ADH97383.1| type III secretion system protein [Chlamydia trachomatis G/9301] Length = 334 Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191 ++A + ++ + + ++ A V + + A + + + + +I Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 + +VP L +T+ D G L + + N Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157 >gi|166154061|ref|YP_001654179.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|166154936|ref|YP_001653191.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335263|ref|ZP_07223507.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930049|emb|CAP03532.1| flagellar M-Ring Protein [Chlamydia trachomatis 434/Bu] gi|165930924|emb|CAP06486.1| flagellar M-Ring Protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 334 Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191 ++A + ++ + + ++ A V + + A + + + + +I Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 + +VP L +T+ D G L + + N Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157 >gi|76789459|ref|YP_328545.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|76167989|gb|AAX50997.1| FliF [Chlamydia trachomatis A/HAR-13] Length = 334 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191 ++A + ++ + + ++ A V + + A + + + + +I Sbjct: 68 IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122 Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 + +VP L +T+ D G L + + N Sbjct: 123 TDYLTRSVPGLTKEYITLSDQHGNLYSPLFEQSNT 157 >gi|255024647|ref|ZP_05296633.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208] Length = 109 Score = 46.8 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 2/108 (1%) Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI--ALDSSNQD 507 + +L L + + + + + I + + + Sbjct: 2 AWIWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFN 61 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + +L + +L M + + R A +++KW E Sbjct: 62 FQTDAFDLSEPEIKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 109 >gi|3979709|emb|CAA39520.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 182 Score = 46.8 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 49/221 (22%) Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV---------- 392 YK+ L I V+V + ++ + + +I V Sbjct: 1 IHKEIAESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDET 57 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 ++ + I ++ F ++ T + S + + + V+ A + ++ +L+ Sbjct: 58 QNQNLSDADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI 117 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 +P + I L N++ Sbjct: 118 -------------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---- 148 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 N +L M + E FAK+LR W + Sbjct: 149 -------NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 182 >gi|207109938|ref|ZP_03244100.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1] Length = 117 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 30/86 (34%), Gaps = 1/86 (1%) Query: 393 SAATGINSRRGDTITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451 A G N RGD + +++ +F + ++ T+ M + + + +++ ++ Sbjct: 2 KQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIV 61 Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGK 477 + + + + Sbjct: 62 LFIFYKKVIVPFSERMLEVVPDEDKE 87 >gi|309790976|ref|ZP_07685517.1| hypothetical protein OSCT_1468 [Oscillochloris trichoides DG6] gi|308227008|gb|EFO80695.1| hypothetical protein OSCT_1468 [Oscillochloris trichoides DG6] Length = 389 Score = 46.5 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 17/184 (9%), Positives = 45/184 (24%), Gaps = 3/184 (1%) Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRG-DTITITSMDFLENQLFNSGTVQVSFMDILS 433 A + + + + + RG D + + L + + L Sbjct: 147 RAQETWLIRQSDLLITPAAVTATFLASRGADPARLRVIPNGATPLADVAPPLRGDLPTLL 206 Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 + + + L + +R + + + +S+AV Sbjct: 207 YIGTLADWQGLHTLIAAVALVLTVRPVRLRIVGSGRSRQRRALAKLAAKLGVSAAVQIEE 266 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK--ILRKWAR 551 D + + N + +M A ++R+ Sbjct: 267 PVPHAEVADLIASTDVGVAPLEPNDRNVTQGCCPIKVIEYMAAARPVVAANLPVVRELLH 326 Query: 552 SEIE 555 ++E Sbjct: 327 EDVE 330 >gi|262274320|ref|ZP_06052131.1| putative type III secretion system lipoprotein precursor EprK [Grimontia hollisae CIP 101886] gi|262220883|gb|EEY72197.1| putative type III secretion system lipoprotein precursor EprK [Grimontia hollisae CIP 101886] Length = 177 Score = 46.1 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 52/151 (34%), Gaps = 14/151 (9%) Query: 60 VNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 N++ V L++ N+ +++ +G + V +AR LA +L Sbjct: 33 SNKVVVLLNKNNVTAKLASLKDGYGVLVDDEQEMRARELLAYYNF-YFEREDLNDLL--E 89 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + F S ++ + E+ + + I+ V + SV+I Sbjct: 90 SKFASLSKLENVKSNFLQSRELYNKLSIMPSILRVSVVVT---------GEKAKRTSVLI 140 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208 +++ ++ I + + D ++ Sbjct: 141 ISLSEISPENKSNIERFLKGVLNEEDKLTIS 171 >gi|254854546|ref|ZP_05243894.1| predicted protein [Listeria monocytogenes FSL R2-503] gi|258607946|gb|EEW20554.1| predicted protein [Listeria monocytogenes FSL R2-503] Length = 124 Score = 46.1 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 2/108 (1%) Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI--ALDSSNQD 507 + +L L + + + + + I + + + Sbjct: 17 AWIWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFN 76 Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + + +L + +L M + + R A +++KW E Sbjct: 77 FQTDAFDLSEPELKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 124 >gi|167947313|ref|ZP_02534387.1| flagellar MS-ring protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 96 Score = 46.1 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%) Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS 187 + RALEGE+ RTI +++ + A + P+ASV I+ + Sbjct: 1 MRYQRALEGELTRTIMTLANVETAXGSPGDAENSRCSFASANNPSASVTIKFYPGRTLEK 60 Query: 188 AEAIRHLVAA---AVPNLDMGDVTVLDSTGKL 216 + + +P L+ VTV+D G+L Sbjct: 61 GQVECDRASGRLRQLPELETSRVTVVDQKGRL 92 >gi|226359675|ref|YP_002777453.1| non-ribosomal peptide synthetase [Rhodococcus opacus B4] gi|226238160|dbj|BAH48508.1| putative non-ribosomal peptide synthetase [Rhodococcus opacus B4] Length = 9855 Score = 45.3 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 15/148 (10%) Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T F + R GEI ++S G+ A V + + Sbjct: 4062 IGRTDFQVKFRGQRIELGEIETVLRSHPGVTGAAVVVYSDATTGD-------HLVAYVVP 4114 Query: 180 INPSVYKSAEAIRHLVAAAVP-NLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSI 233 V +AE IR + ++P + V +LD +GKL + Sbjct: 4115 APDRVADTAE-IRRHASGSLPSYMVPSAVVLLDEFPLNTSGKLDRKALPAPEFSSDATEY 4173 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSA 261 V A ++E+E + A LG Sbjct: 4174 V-APRNEVEQALAGVFADVLGAGRVGVH 4200 Score = 42.6 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 15/148 (10%) Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T F + R GEI ++S G+ A V + + Sbjct: 3001 IGRTDFQVKFRGQRIELGEIETVLRSHPGVTGAAVVVYSDATTGD-------HLVAYVVP 3053 Query: 180 INPSVYKSAEAIRHLVAAAVP-NLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSI 233 V +AE IR + ++P + V +LD +GKL + Sbjct: 3054 APDRVADTAE-IRRHASGSLPSYMVPSAVVLLDEFPLNTSGKLDRKALPAPEFTSDATEY 3112 Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSA 261 V A +E + A LG++ Sbjct: 3113 V-APSTSVERAVASVFCAVLGLERVSVR 3139 >gi|89897914|ref|YP_515024.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89331286|dbj|BAE80879.1| type III secretion flagellar biosynthesis M-ring protein [Chlamydophila felis Fe/C-56] Length = 337 Score = 45.3 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIR 192 + +I R + + +A V + +P P SV++ + S +I Sbjct: 71 KKEQIERDLTMFQSVASATVALSLPTEDDP---HIIPQVSVILSTRKNETFSSSLLHSIT 127 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 +++++P L +T+ D+ G + + E Sbjct: 128 DYLSSSIPGLTKEHITLSDNLGNVYSPGE 156 >gi|213620660|ref|ZP_03373443.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 63 Score = 44.9 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377 + ++ E SNYE++ T + +ERLS+AVVVN L + Sbjct: 1 TSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLT 60 Query: 378 QGK 380 + Sbjct: 61 ADQ 63 >gi|166999370|ref|ZP_02265209.1| type III secretion protein [Burkholderia mallei PRL-20] gi|238563894|ref|ZP_04610787.1| type III secretion protein [Burkholderia mallei GB8 horse 4] gi|238519737|gb|EEP83205.1| type III secretion protein [Burkholderia mallei GB8 horse 4] gi|243064444|gb|EES46630.1| type III secretion protein [Burkholderia mallei PRL-20] Length = 187 Score = 44.9 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR-ISDNGS---SISVPSSMVGKARIHL 97 LY L D N + AL + +D + + +G +++V + KA L Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVL 88 >gi|237735907|ref|ZP_04566388.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381652|gb|EEO31743.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 629 Score = 44.9 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L + + V + I A + P +L L V + Sbjct: 304 FSKLVNKFKGLDTKAKVAVGVVTALVIAGIAFAIYLGVKPD-TSLMPDLTEKTVEQAKEI 362 Query: 67 LSEANI 72 L E N+ Sbjct: 363 LKEYNV 368 >gi|62185477|ref|YP_220262.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62148544|emb|CAH64315.1| putative flagellar-related protein [Chlamydophila abortus S26/3] Length = 337 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 5/94 (5%) Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIR 192 + ++ R + + A V + +P P SV++ + ++I Sbjct: 71 KKEQLERDLTMFQPVAHATVALSLPTEDDP---HIVPQVSVILSSHKNEMFSLPLLQSIT 127 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 ++++VP L +T+ D+ G + E+ N Sbjct: 128 DYLSSSVPGLTKEHITLSDNLGNTYSPGELSTNS 161 >gi|188492157|ref|ZP_02999427.1| lipoprotein PrgK [Escherichia coli 53638] gi|188487356|gb|EDU62459.1| lipoprotein PrgK [Escherichia coli 53638] Length = 98 Score = 44.5 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 3/61 (4%) Query: 46 PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102 L L+ N + L NI+ D G + I V + A L L Sbjct: 16 CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75 Query: 103 P 103 P Sbjct: 76 P 76 >gi|167757023|ref|ZP_02429150.1| hypothetical protein CLORAM_02572 [Clostridium ramosum DSM 1402] gi|167703198|gb|EDS17777.1| hypothetical protein CLORAM_02572 [Clostridium ramosum DSM 1402] Length = 648 Score = 44.1 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + L + + V + I A + P +L L V + Sbjct: 323 FSKLVNKFKGLDTKAKVGVGVVTALVIAGIAFAIYLGVKPD-TSLMPDLTEKTVEQAKEI 381 Query: 67 LSEANI 72 L E N+ Sbjct: 382 LKEYNV 387 >gi|302550206|ref|ZP_07302548.1| ABC transporter substrate-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302467824|gb|EFL30917.1| ABC transporter substrate-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 272 Score = 43.8 bits (101), Expect = 0.081, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 13/102 (12%) Query: 78 DNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G++++VP+ V +AR LAA GL + G E + + +++ Sbjct: 130 KSGATVAVPNDTVNEARALKLLAAHGLITLKDGVGSEA-------TPSDITKNPKKLKFK 182 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 E E A+T +S+ + AA V + ++++ Sbjct: 183 ELEAAQTPRSLDDVDAAVV----NGNYALESDLKPAKDALVL 220 >gi|298206720|ref|YP_003714899.1| Glutamate-1-semialdehyde aminotransferase [Croceibacter atlanticus HTCC2559] gi|83849351|gb|EAP87219.1| Glutamate-1-semialdehyde aminotransferase [Croceibacter atlanticus HTCC2559] Length = 426 Score = 43.8 bits (101), Expect = 0.082, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 5/146 (3%) Query: 8 LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV---NRIS 64 + LG S + + +A +N +L+ LE N I+ Sbjct: 282 KEIMNHLAPLGPVYQAGTLSGNPLAMAAGLAMLTEIN--TNTDLFKSLEDKTEYLHNGIT 339 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 AL + NI I+ GS ISV + V A +G + + + D ++ Sbjct: 340 EALEKNNITHTINRQGSMISVHFTDVNVTDFETAVKGNNDTFKRFFHHMLDNGIYIAPSA 399 Query: 125 FMQEITRVRALEGEIARTIQSISGIV 150 F ++ +TI++I+ Sbjct: 400 FESWFLNDALSYEDLDKTIEAIASFK 425 >gi|169349819|ref|ZP_02866757.1| hypothetical protein CLOSPI_00557 [Clostridium spiroforme DSM 1552] gi|169293387|gb|EDS75520.1| hypothetical protein CLOSPI_00557 [Clostridium spiroforme DSM 1552] Length = 649 Score = 43.8 bits (101), Expect = 0.086, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 7 LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66 + + SL + + + I++ + + + P NL LE + Sbjct: 322 IKKLINKFKSLSTKAKVGIIAAIVLVVAVIAFFLYANIRPD-TNLMPDLEGKTRKQAIAL 380 Query: 67 LSEANI 72 L + N+ Sbjct: 381 LKDYNV 386 >gi|218780299|ref|YP_002431617.1| rhomboid family protein [Desulfatibacillum alkenivorans AK-01] gi|218761683|gb|ACL04149.1| Rhomboid family protein [Desulfatibacillum alkenivorans AK-01] Length = 285 Score = 43.4 bits (100), Expect = 0.097, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 21/128 (16%) Query: 48 YDNLY-VKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAA---QG 101 L+ L + N + L + I + ++ G I VP +A + A + Sbjct: 1 MTPLFIKNLPDNKANLYGLILEASKIAYEFKRAEEGWQILVPQKDHDRAFAQITAYTGEN 60 Query: 102 LPSSSSNSGYELFDKVNSF-----------GLTSFMQEITRVRALEGEIARTI---QSIS 147 LP + F + G F + + +G +A I Q Sbjct: 61 LPQDLDEPEWPQFKTYSGLWAAGLLAVFYAGTGPFSEN-RWLLDQKGAVAEKILDGQIWR 119 Query: 148 GIVAARVH 155 + A +H Sbjct: 120 AVTALCLH 127 >gi|167589966|ref|ZP_02382354.1| flagellar MS-ring protein [Burkholderia ubonensis Bu] Length = 86 Score = 43.4 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 5/82 (6%) Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 ++ G+ P P + V GL + A + + N + R +++ Sbjct: 9 DQLHGRDRRGPAPEDAVVLDGLPAPEKAAANEDADALLLGFENEKHR-----YERNLDYA 63 Query: 532 LHMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 64 RTIARQDPKIVATVVKSWVNDE 85 >gi|144897188|emb|CAM74052.1| Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum gryphiswaldense MSR-1] Length = 53 Score = 43.4 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 20/51 (39%) Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 +++ + ++ V S ++ +++ + E I+R W E Sbjct: 2 GGEEEVIADELIDIDKVEGRVKASSIRKIGEIVDKHPEEALSIIRNWLYQE 52 >gi|300728048|ref|ZP_07061421.1| cell adhesion domain protein [Prevotella bryantii B14] gi|299774650|gb|EFI71269.1| cell adhesion domain protein [Prevotella bryantii B14] Length = 508 Score = 43.0 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 65/251 (25%), Gaps = 38/251 (15%) Query: 86 PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145 P+ +A+I LA + + + +I LE ++AR I Sbjct: 128 PADQSSEAKIALA-------------DYMTRQQNISRPEGGSDIQMQ--LERKMARVIVR 172 Query: 146 ISGIVA-------ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198 ISG + ++ + S + G +S I LV Sbjct: 173 ISGFGSQYRDDQKTVSNVSIYSEASGIENGNSTGSSTEITPYAQGDGGQGSTYTALVVPG 232 Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258 + +T+ D G L + G S +G + Sbjct: 233 YGDSGARFITLTDGEGSTLLVKGIPELEAGNSY----------------TFNLVVGKNRI 276 Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318 A V + T +I + + + ++V P + Sbjct: 277 EVASVTVQDWTTGEILAGGQAQEVSASVTAITLNKTETQLGVGNTETLSVSSVTPDNATD 336 Query: 319 KVPLPRSLENT 329 + S + Sbjct: 337 QTVTWSSDNPS 347 >gi|297154949|gb|ADI04661.1| putative type I polyketide synthase [Streptomyces bingchenggensis BCW-1] Length = 1649 Score = 43.0 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 13/157 (8%) Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA------- 197 + V VH + + + + +++ + E IR L AA Sbjct: 1294 EMPSAVRQSVHQALALVQKWLADERFAASRLVVVTGGAVATEPDEGIRDLAAAPVWGLLR 1353 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF----- 252 + + + G +LD G L+ + + + + + +A Sbjct: 1354 SAQSENPGRFVLLDIDGNALSPETLVSAVAADEPQVAVRAGRLRVPRLERMVAPMADAIP 1413 Query: 253 -LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 G + T E V P ++ Sbjct: 1414 SFGGGTVLVSRTNSRTAGTLHRVERVAIPLGRLRGER 1450 >gi|156974779|ref|YP_001445686.1| hypothetical protein VIBHAR_02497 [Vibrio harveyi ATCC BAA-1116] gi|156526373|gb|ABU71459.1| hypothetical protein VIBHAR_02497 [Vibrio harveyi ATCC BAA-1116] Length = 566 Score = 42.2 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 33/272 (12%), Positives = 75/272 (27%), Gaps = 19/272 (6%) Query: 143 IQSISGIV-AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPN 201 I I + ++R I + F + A I L +A V Sbjct: 229 INDIDVVNTSSRAEIDFINKTLFSPDLGKDFTFTFETVDG------APKIVTLTSADVAT 282 Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA--AFLGVDNF- 258 + +V ++D+ G + + + ++ A N+++ + + G Sbjct: 283 SPVRNVKIIDNDGTKVGYMQYNAFEVTAQQPLINAFNQLSAANVDEIIMDLRYNGGGLVW 342 Query: 259 -RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR--SETSQPESAVTVEQNMPHV 315 + V L + K+ S + + + + +P + Sbjct: 343 QSAQVGYMLAGTHSSSTFAELIYNDKIMNSGEVENNVYSFVDTEIDWGKGILTDNALPTL 402 Query: 316 SDRKVPLPRSLENTDKKEEQSN------YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 S ++V + + E N E+ TT Y + Sbjct: 403 SAKRVYVLTTDNTASSSELLINGLRGIDVEVVQIGTTTTGKPYGFSPQQNCGNMYYTIQF 462 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + D + +VS+ G + + Sbjct: 463 KSSNAKGFGDFADGFTPTAKSLVSSNIGTDEK 494 >gi|254285272|ref|ZP_04960237.1| VcsJ2 [Vibrio cholerae AM-19226] gi|71480628|gb|AAZ32250.1| VcsJ2 [Vibrio cholerae non-O1/non-O139] gi|150424544|gb|EDN16480.1| VcsJ2 [Vibrio cholerae AM-19226] Length = 177 Score = 42.2 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 16/181 (8%) Query: 31 VPIMLFMAARFFVNSPHYDNLYVKLEVSD-VNRISVALSEANIDFRISD--NGSSISVPS 87 + ++F + + K E +D N++ V L++ ++ +++ +G + V Sbjct: 4 ILFLIFALIVSGCSESGMTQV-AKFESADLSNKVIVLLNKNQVNAKLTQLKDGYGVLVDD 62 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 + KAR LA +L + F S ++ + EI + + Sbjct: 63 AQEMKARELLAYYNF-YFEREDLNDLL--ESKFASLSKLEMVKSNFLQSREIYNKLSIMP 119 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 I+ V + SV+I +++ ++ I + + D + Sbjct: 120 NILRVSVVVT---------GEKAKRISVLILSLSEISAENKSNIERFLKGVLNEEDKLTI 170 Query: 208 T 208 + Sbjct: 171 S 171 >gi|304412109|ref|ZP_07393719.1| putative type III secretion system lipoprotein precursor EprK [Shewanella baltica OS183] gi|307306004|ref|ZP_07585750.1| putative type III secretion system lipoprotein precursor EprK [Shewanella baltica BA175] gi|304349659|gb|EFM14067.1| putative type III secretion system lipoprotein precursor EprK [Shewanella baltica OS183] gi|306911497|gb|EFN41923.1| putative type III secretion system lipoprotein precursor EprK [Shewanella baltica BA175] Length = 181 Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 23/180 (12%) Query: 36 FMAARFFVNSPHYDNLYVKLEVSDV-NRISVALSEANIDFR--ISDNGSSISVPSSMVGK 92 + F + + +D N++ V L+ + IS + + V + + Sbjct: 7 IVFLVLFGCNDQGRVEVANFDSADAANKVVVLLARYQVSASLSISKDRHLVYVDKDNLAQ 66 Query: 93 ARIHLAAQGLPSSSSNSGYELFDKV----NSFGLTSFMQEITRVRALEGEIARTIQSISG 148 AR L + N +E D + F S ++ + EI I I Sbjct: 67 AREVL-------TKFNFYFEREDLNDLLESKFASLSKLEIVKGNLLESREIYNKISVIPN 119 Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208 ++ + V + SV+I + + ++ I + V LD V+ Sbjct: 120 VLRSSVIVT---------GEKNKRVSVIIFSFDEIERENKLNIERFLKGLVSELDTLTVS 170 >gi|229529191|ref|ZP_04418581.1| hypothetical protein VCG_002284 [Vibrio cholerae 12129(1)] gi|229332965|gb|EEN98451.1| hypothetical protein VCG_002284 [Vibrio cholerae 12129(1)] Length = 177 Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 64/181 (35%), Gaps = 16/181 (8%) Query: 31 VPIMLFMAARFFVNSPHYDNLYVKLEVSD-VNRISVALSEANIDFRISD--NGSSISVPS 87 + +++F + + K E +D N++ V L++ ++ +++ +G + V Sbjct: 4 LLLLIFALIVSGCSESGMTQV-AKFESADLSNKVIVLLNKNQVNAKLTQLKDGYGVLVDD 62 Query: 88 SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147 + KAR LA +L + F S ++ + EI + + Sbjct: 63 AQEMKARELLAYYNF-YFEREDLNDLL--ESKFASLSKLEMVKSNFLQSREIYNKLSIMP 119 Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207 I+ V + SV+I +++ ++ I + + D + Sbjct: 120 NILRVSVVVT---------GEKAKRISVLILSLSEISAENKSNIERFLKGVLNEEDKLTI 170 Query: 208 T 208 + Sbjct: 171 S 171 >gi|126175629|ref|YP_001051778.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS155] gi|125998834|gb|ABN62909.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS155] Length = 537 Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65 +S +L RI + +L +++ + F++ + L+ L+ +++ R+ Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216 Query: 66 ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103 L+ + + +G + +AR LA + LP Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271 Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161 + + G+ELF ++ ++ R + T++ I + + + Sbjct: 272 NQNKTIRGFELFANDQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++ ++ + K+ + + Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362 >gi|217972118|ref|YP_002356869.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS223] gi|217497253|gb|ACK45446.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS223] Length = 537 Score = 42.2 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65 +S +L RI + +L +++ + F++ + L+ L+ +++ R+ Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216 Query: 66 ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103 L+ + + +G + +AR LA + LP Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271 Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161 + + G+ELF ++ ++ R + T++ I + + + Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++ ++ + K+ + + Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362 >gi|213162219|ref|ZP_03347929.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 80 Score = 42.2 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 N ++ ++ E I + + G++ A+V I +P + + Sbjct: 1 MFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSV 59 Query: 174 SVMIRAINPSVYKS 187 +V I+ ++ Sbjct: 60 AVFIKYSPQVNMEA 73 >gi|192362442|ref|YP_001980541.1| Rhsfamily protein [Cellvibrio japonicus Ueda107] gi|190688607|gb|ACE86285.1| Rhsfamily protein [Cellvibrio japonicus Ueda107] Length = 1401 Score = 42.2 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 66/226 (29%), Gaps = 2/226 (0%) Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208 I+ AR H++ K +++ R + ++ + V VT Sbjct: 535 IIDARAHLLPVVEQYTWKNTYDAAGNLLTRRDPYNKGETYTYTKTGDLETVIAAGGSKVT 594 Query: 209 VL-DSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267 + ++ G+ LT + + + + N NK+ A+ +V E N Sbjct: 595 LTSNANGQPLTITDDNNKVTKLQYDKAGRLTVTTDANGNKSQTAYDAQGRVFRSVDGEGN 654 Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 E + + L + R+ Q + + + Sbjct: 655 TTQYNYVEDLLR-SIQYPTYKELLEYDNRNRVKQTTQQANSRNYIRKHGYDPLGNITNST 713 Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 + E Y++ ++ T + S N ++ + G Sbjct: 714 DAQDNETVYEYDVLSRVKKITDAEGGVTEFSYDARDNLLQVKDPEG 759 >gi|283851497|ref|ZP_06368777.1| DNA-directed RNA polymerase, beta' subunit [Desulfovibrio sp. FW1012B] gi|283573031|gb|EFC21011.1| DNA-directed RNA polymerase, beta' subunit [Desulfovibrio sp. FW1012B] Length = 1386 Score = 41.8 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 28/268 (10%), Positives = 72/268 (26%), Gaps = 11/268 (4%) Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG----KLLTANEME 223 +SV + +++ + + G V+V+D G + + + Sbjct: 938 REIAQSSVTAQHNGRVSLSRVKSVVNQQGHTIMMGKSGQVSVVDDQGRERERYSLPSGSK 997 Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ-----IREIVY 278 + + E + + G+ F V + + + + Sbjct: 998 LYAVAGQEVKKDQLLAEWDPFNEPFVTDVAGIVKFTDIVEGKTYQEKVDDATKRATQTII 1057 Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338 + + + D + + +P + +MP + + + D + Sbjct: 1058 EYRTTSFKPAVSIVDERGTPKVRPGTNTLAVFSMPVGAILMARDGQEVFEGDIIARKP-R 1116 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAATG 397 E + E + ++E+ G + + I A Sbjct: 1117 ESSKTKDIVGGLPRVAELFEVRKPKEMAVVSEIDGIISAGPETKGKRKIIVTPEAGDAKE 1176 Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQ 425 RG +T+ DF+E + Sbjct: 1177 YLIPRGKHVTVQEGDFVEAGELLTEGYP 1204 >gi|297198402|ref|ZP_06915799.1| ABC transporter substrate-binding protein [Streptomyces sviceus ATCC 29083] gi|197716092|gb|EDY60126.1| ABC transporter substrate-binding protein [Streptomyces sviceus ATCC 29083] Length = 276 Score = 41.8 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 13/118 (11%) Query: 78 DNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G++++VP+ V +AR LAA GL + G E + ++ Sbjct: 134 KSGATVAVPNDAVNEARSLKLLAANGLITLKDGVGSEA-------TPQDIAKNPKNLKFK 186 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193 E E A+T++S+ + AA V + ++++ + S Y + A++ Sbjct: 187 EVEAAQTVRSLDDVDAAVV----NGNYAISADLKPAKDALVLESAKNSPYGNFLAVKD 240 >gi|304411049|ref|ZP_07392665.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS183] gi|307301828|ref|ZP_07581586.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica BA175] gi|304350584|gb|EFM14986.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS183] gi|306913866|gb|EFN44287.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica BA175] Length = 537 Score = 41.8 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65 +S +L RI + +L +++ + F++ + L+ L+ +++ R+ Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216 Query: 66 ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103 L+ + + +G + +AR LA + LP Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271 Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161 + + G+ELF ++ ++ R + T++ I + + + Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++ ++ + K+ + + Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362 >gi|113971431|ref|YP_735224.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella sp. MR-4] gi|113886115|gb|ABI40167.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella sp. MR-4] Length = 537 Score = 41.8 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65 +S +L RI + +L +++ + F++ + L+ L+ +++ R+ Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216 Query: 66 ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103 L+ + + +G + +AR LA + LP Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNDLMLSDLLPQHADFLLT 271 Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161 + + G+ELF ++ ++ R + T++ I + + + Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++ ++ + K+ + + Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362 >gi|240140468|ref|YP_002964947.1| hypothetical protein MexAM1_META1p3990 [Methylobacterium extorquens AM1] gi|240010444|gb|ACS41670.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 733 Score = 41.8 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 59/212 (27%), Gaps = 3/212 (1%) Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400 + ++ L + + + + + V GR D + + A+ + AT N Sbjct: 486 TERVTKIMAEDGSLTDVQVDPTLKQPVMKMVDGRPVDDEGLKAAQADPDLRDKVATIFNP 545 Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460 G + S + + + + + + + ++ Sbjct: 546 NVG-KYAVESD--IGPAYATRRQEAFAALSDMLKTNSDLAKIAGDILFKSADFPGADEVA 602 Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520 R+ G + T L+ + AL+ + + + R Sbjct: 603 ERIKRTIPPNILGQGVPPAEAELQQKVQQLTALLQQMDAALNEKQAKEAADYEHREDRHT 662 Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + R+ + + E F ++R+ Sbjct: 663 LDSYRAETDRMKALAASDPEAFRPVIRQLIGD 694 >gi|153831915|ref|ZP_01984582.1| peptidase S41 [Vibrio harveyi HY01] gi|148871913|gb|EDL70736.1| peptidase S41 [Vibrio harveyi HY01] Length = 532 Score = 41.8 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 76/272 (27%), Gaps = 19/272 (6%) Query: 143 IQSISGIV-AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPN 201 I I + ++R I + F + A I L +A V Sbjct: 195 INDIDVVNTSSRAEIDFINKTLFSPDLGKDFTFTFETVDG------APKIVTLTSADVAT 248 Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA--AFLGVDNF- 258 + +V ++D+ G + + + ++ A N+++ + + G Sbjct: 249 SPVRNVKIIDNDGTKVGYMQYNAFEVTAQQPLINAFNQLSAANVDEIIMDLRYNGGGLVW 308 Query: 259 -RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR--SETSQPESAVTVEQNMPHV 315 + V L + K+ S + + + + +P + Sbjct: 309 QSAQVGYMLAGTHSTSTFAELIYNDKIMNSGEVENNVYNFVDTEIDWGKGILTDNALPTL 368 Query: 316 SDRKVPLPRSLENTDKKEEQSN------YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369 S ++V + + E N E+ TT Y + Sbjct: 369 SAKRVYVLTTDNTASSSELLINGLRGIDVEVVQIGTTTTGKPYGFSPQQNCGNMYYTIQF 428 Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + D + +VS+ GI+ + Sbjct: 429 KSSNAKGFGDFADGFTPTAKSLVSSNIGIDDK 460 >gi|160874058|ref|YP_001553374.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS195] gi|160859580|gb|ABX48114.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS195] gi|315266289|gb|ADT93142.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS678] Length = 537 Score = 41.8 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65 +S +L RI + +L +++ + F++ + L+ L+ +++ R+ Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216 Query: 66 ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103 L+ + + +G + +AR LA + LP Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271 Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161 + + G+ELF ++ ++ R + T++ I + + + Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++ ++ + K+ + + Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362 >gi|218680631|ref|ZP_03528528.1| flagellar MS-ring protein [Rhizobium etli CIAT 894] Length = 98 Score = 41.8 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%) Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 E G + P + A LM + + + N V + + Sbjct: 13 ATPEAAGLELPDFAPAAGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPER 72 Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555 +L M+EINEER AKILRKWA + Sbjct: 73 KLSRMVEINEERAAKILRKWAIDDAA 98 >gi|152999440|ref|YP_001365121.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS185] gi|151364058|gb|ABS07058.1| signal transduction histidine kinase regulating citrate/malate metabolism [Shewanella baltica OS185] Length = 537 Score = 41.8 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%) Query: 10 FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65 +S +L RI + +L +++ + F++ + L+ L+ +++ R+ Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216 Query: 66 ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103 L+ + + +G + +AR LA + LP Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271 Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161 + + G+ELF ++ ++ R + T++ I + + + Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328 Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 ++ ++ + K+ + + Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362 >gi|29840662|ref|NP_829768.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29835012|gb|AAP05646.1| secretory protein, YscJ/FliF family [Chlamydophila caviae GPIC] Length = 337 Score = 41.8 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 5/94 (5%) Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIR 192 + +I R + + A V + +P P SV++ + +I Sbjct: 71 KKEQIERDLTMFHSVANATVALSLPTEDDP---DIIPQVSVILSSHKDEVFSSSLLLSIV 127 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226 +++++P L +T+ D+ G + E ++ Sbjct: 128 DYLSSSIPGLAKEHITLSDNLGNTYSPGEFSNSL 161 >gi|253990936|ref|YP_003042292.1| hypothetical protein PAU_03462 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782386|emb|CAQ85550.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 185 Score = 41.1 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 27/165 (16%) Query: 60 VNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 N++ V L+++ I+ + + NG SI V + V +AR L S N +E D Sbjct: 36 ANKVLVLLNQSQINAELVSTKNGYSIFVDETHVMEARTLL-------SRFNFYFETEDLN 88 Query: 118 ----NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 + F S ++ I EI + + ++ + V + + Sbjct: 89 DLLESKFASLSKLENIKSNLLEGREIYNKLNVVPDVLRSNVMVSGSESK---------RV 139 Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV-----TVLDST 213 SV+I +I S +I + V D+ V +++D Sbjct: 140 SVLIISIKELDATSKSSIEKFLKGIVSERDILTVEYLVQSIVDEK 184 >gi|209522667|ref|ZP_03271225.1| outer membrane adhesin like proteiin [Arthrospira maxima CS-328] gi|209496716|gb|EDZ97013.1| outer membrane adhesin like proteiin [Arthrospira maxima CS-328] Length = 3441 Score = 41.1 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 29/270 (10%), Positives = 66/270 (24%), Gaps = 33/270 (12%) Query: 151 AARVHIVMPDMGSFRKIGARPT-----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMG 205 +A V + + + T + N S L Sbjct: 1694 SATVFLTIQENQPPTANDDNATVRTGNTVTINVLNNDSDPDGV-------------LVPD 1740 Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 VTV+D L +++ + D+ + A Sbjct: 1741 TVTVVD-----LPDYGTITVNPNGTITYSHDGSSTNSDR----FTYTVEDDDGAISNPAT 1791 Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV---TVEQNMPHVSDRKVPL 322 +++ Q+ + + D+ R+ + S P+ + TV Sbjct: 1792 VSLTIQENQPPTANDDNATVRTGNTVTINVLNNDSDPDGVLVPDTVTVVDSPNYGNITVN 1851 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382 P +N + + ++ + S V + + + Sbjct: 1852 PNGTITYSHDGSSTN--SDRFTYTVEDNDGAISN-SATVFLTIEENQPPTANDDNATVLI 1908 Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMD 412 IN + + + DT+T+ Sbjct: 1909 GNTVTINVLNNDSDPDGVLVPDTVTVVDSP 1938 >gi|167717601|ref|ZP_02400837.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98] Length = 79 Score = 41.1 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 3/81 (3%) Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532 P GL D L +++ + R +++ Sbjct: 1 PAAAAVPALDGPDDVLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYAR 57 Query: 533 HMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 58 TIARQDPKIVATVVKNWVSDE 78 >gi|167822257|ref|ZP_02453728.1| flagellar MS-ring protein [Burkholderia pseudomallei 9] Length = 80 Score = 41.1 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 3/82 (3%) Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 P GL D L +++ + R +++ Sbjct: 1 EPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYA 57 Query: 532 LHMIEINEERFAKILRKWARSE 553 + + + A +++ W E Sbjct: 58 RTIARQDPKIVATVVKNWVSDE 79 >gi|134103133|ref|YP_001108794.1| two-component system sensor kinase [Saccharopolyspora erythraea NRRL 2338] gi|291003924|ref|ZP_06561897.1| two-component system sensor kinase [Saccharopolyspora erythraea NRRL 2338] gi|133915756|emb|CAM05869.1| two-component system sensor kinase [Saccharopolyspora erythraea NRRL 2338] Length = 414 Score = 40.7 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 30/114 (26%) Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494 ++ LV L++ G+ AL R+ +S + Sbjct: 154 WPVVLVTGTAQLVIALVLLLWGVPALARVQARATLALLSPSRRSATEERLAARVDELAQT 213 Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548 + + + ++ + + E A++LR+ Sbjct: 214 RAGAVEAHGAELRRIERDLHDGAQAQLVALAMRLGVAEKAVRDDPETTARLLRE 267 >gi|167574673|ref|ZP_02367547.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786] Length = 88 Score = 40.7 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 4/87 (4%) Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 + G S + + +P+ L + + + Sbjct: 1 PAVAAPALAGGSTAGGRESEPSASDAALPDGRPRLANVMPFLDDVELPPAD----SGVEV 56 Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553 L + + ER A+++++W +S Sbjct: 57 LIDHLRTLSQKAPERVAEVVKQWIQSN 83 >gi|331091909|ref|ZP_08340741.1| hypothetical protein HMPREF9477_01384 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402808|gb|EGG82375.1| hypothetical protein HMPREF9477_01384 [Lachnospiraceae bacterium 2_1_46FAA] Length = 1856 Score = 40.7 bits (93), Expect = 0.66, Method: Composition-based stats. Identities = 18/208 (8%), Positives = 57/208 (27%), Gaps = 15/208 (7%) Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221 + K + +A R+ + A +L + V+D+ G ++ + Sbjct: 768 DANGKPITDTKGRSSVTTAEKEAKLQVKADRNEIKANGTDLSYLQIDVVDAKGNIVPNAD 827 Query: 222 M---------------ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266 + S + + + + + V AE Sbjct: 828 DKVKVEVTGNGTLVGLDNGWQTDHDSYKGKERRVYNGSGIAIVQSTKNAGEIKVKVSAEG 887 Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326 + D ++ + S +++ + + ++ + + + + Sbjct: 888 LGEKTVTLNTTADTTGGEQQVVVDSFFMEKNYYVKVGNKPSLPKTIEVRYSNGTKEQKPV 947 Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKL 354 + +EQ+N T + ++ Sbjct: 948 KWNTISDEQTNKAGAFTVKGTVENAGEV 975 >gi|238764041|ref|ZP_04624996.1| Type III secretion system apparatus lipoprotein [Yersinia kristensenii ATCC 33638] gi|238697712|gb|EEP90474.1| Type III secretion system apparatus lipoprotein [Yersinia kristensenii ATCC 33638] Length = 55 Score = 40.7 bits (93), Expect = 0.69, Method: Composition-based stats. Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 1/45 (2%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 + + ++ + LY L + N++ L I Sbjct: 5 VALLLVVMSLSGCGME-LYSGLSEGEANQMLALLMLNQIKAEKRP 48 >gi|118589579|ref|ZP_01546984.1| putative DNA alkylation repair protein [Stappia aggregata IAM 12614] gi|118437665|gb|EAV44301.1| putative DNA alkylation repair protein [Stappia aggregata IAM 12614] Length = 376 Score = 40.7 bits (93), Expect = 0.71, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 19/59 (32%) Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558 AL L+ YV + L + + + + A I + W + + R Sbjct: 178 ALVVDPTPTLPLLEALKDDPEDYVRRSVANHLNDIAKDHPDLVADIAKSWLKDAEKPRE 236 >gi|42524410|ref|NP_969790.1| hypothetical protein Bd3014 [Bdellovibrio bacteriovorus HD100] gi|39576619|emb|CAE80783.1| fliG [Bdellovibrio bacteriovorus HD100] Length = 577 Score = 40.7 bits (93), Expect = 0.72, Method: Composition-based stats. Identities = 15/166 (9%), Positives = 46/166 (27%), Gaps = 2/166 (1%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 I +++++ +++ GD++T+ ++ + + + L+ T+I Sbjct: 114 NPETEKIIKELLTSKLHLDATAGDSVTVKRIELPADPPKAEPKPDI--LPELTWKMWTLI 171 Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500 + L + L+ + + + + E A Sbjct: 172 VIMSLLALSGLMFWAWRRGRAQDPRKELKENHEYKHTEKDQDGEEKPEEVVAAATEPAAA 231 Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 Q + I + + + + A +L Sbjct: 232 AVVEPQFNMDAVKQHILAIAAQYPQLASRAVTEFTLNESAGDASLL 277 >gi|325676776|ref|ZP_08156449.1| exopolyphosphatase [Rhodococcus equi ATCC 33707] gi|325552324|gb|EGD22013.1| exopolyphosphatase [Rhodococcus equi ATCC 33707] Length = 8934 Score = 40.7 bits (93), Expect = 0.74, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 15/146 (10%) Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T F ++ R GEI ++ G+ AR + + G ++ V+ A Sbjct: 3261 LGRTDFQVKVRGFRIELGEIESALRRFPGV--ARAVVTVDGSGPASRLV----GYVVPEA 3314 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-----STGKLLTANEMERNILGKSLSIV 234 A+ + V VLD GKL + ++ Sbjct: 3315 GAAVDPADVTEFVGTFLASY--MVPSAVMVLDALPLGPAGKLDRRALPAPDFGARTAGRA 3372 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRS 260 + E + A LG+D+ Sbjct: 3373 PRSERE--RQLADLFAEVLGLDSVGV 3396 >gi|312139771|ref|YP_004007107.1| non-ribosomal peptide synthetase [Rhodococcus equi 103S] gi|311889110|emb|CBH48423.1| putative non-ribosomal peptide synthetase [Rhodococcus equi 103S] Length = 8934 Score = 40.7 bits (93), Expect = 0.75, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 15/146 (10%) Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179 G T F ++ R GEI ++ G+ AR + + G ++ V+ A Sbjct: 3261 LGRTDFQVKVRGFRIELGEIESALRRFPGV--ARAVVTVDGSGPASRLV----GYVVPEA 3314 Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-----STGKLLTANEMERNILGKSLSIV 234 A+ + V VLD GKL + ++ Sbjct: 3315 GAAVDPADVTEFVGTFLASY--MVPSAVMVLDALPLGPAGKLDRRALPAPDFGARTAGRA 3372 Query: 235 QAIQHEIEMNINKALAAFLGVDNFRS 260 + E + A LG+D+ Sbjct: 3373 PRSERE--RQLADLFAEVLGLDSVGV 3396 >gi|322417797|ref|YP_004197020.1| hypothetical protein GM18_0255 [Geobacter sp. M18] gi|320124184|gb|ADW11744.1| conserved repeat domain protein [Geobacter sp. M18] Length = 2257 Score = 40.7 bits (93), Expect = 0.76, Method: Composition-based stats. Identities = 32/306 (10%), Positives = 84/306 (27%), Gaps = 21/306 (6%) Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173 V+ FGL+ F Q R E R + + + R + + + P Sbjct: 1314 LKGVDGFGLSRFEQNAKLARTGEIAAIRLVTAEGNVADGRTPVRVQVQLLDQDGKPVPAN 1373 Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233 + + +L ++ + +D+ G + + L+ Sbjct: 1374 AQLALKGGELRP-------YLEPGSLAVSAGTGMIAVDAQGWMKFQPVTASGLYRTQLAY 1426 Query: 234 VQ---AIQHEIEMNINK-----ALAAFLGVDNFRSAVVAELNMDTQQI----REIVYDPD 281 + I+ ++ + +G + + + ++ + + Sbjct: 1427 NKATLDIETYVKPKMRNWILVGLAEGTVGYNTATGHMQNLKDAGAEEHLYDDERLAFYAK 1486 Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341 V+ L+ ++ S S ++ QN+ + + + + D + + Sbjct: 1487 GSVKGEWLLTMSYDSAKKSTGVSGNSLFQNIDPNAFYTLYGDATTQAYDASSRRKVFL-- 1544 Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401 + ++V + G + D L A + Sbjct: 1545 KVERDQFNAMLGDFDTGLSVTELSRYSRRLNGVKTEYRSKDYELTAFGSETGQAFVKDEL 1604 Query: 402 RGDTIT 407 RGD + Sbjct: 1605 RGDGTS 1610 >gi|190894993|ref|YP_001985286.1| D-amino acid dehydrogenase small subunit [Rhizobium etli CIAT 652] gi|218516485|ref|ZP_03513325.1| D-amino acid dehydrogenase small subunit [Rhizobium etli 8C-3] gi|190700654|gb|ACE94736.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli CIAT 652] gi|327193284|gb|EGE60190.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli CNPAF512] Length = 422 Score = 40.3 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query: 51 LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109 L+ + D + AL+ I + + D I V ++ R + GL + + Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDQDGCIRVEPALRH-VREKIVG-GLLTPKDET 197 Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 G + F N+ + + TI+++ + A RV V+ D R+ Sbjct: 198 G-DCFKFTNALAAQAEALGVRFAY------GTTIKALD-VEAGRVRGVVTDRDPDRERQR 249 Query: 170 RPTASVMIRAINPSVY 185 +V++ + S Sbjct: 250 MRAEAVVVALGSYSPL 265 >gi|324997438|ref|ZP_08118550.1| hypothetical protein PseP1_01676 [Pseudonocardia sp. P1] Length = 112 Score = 40.3 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 23/110 (20%) Query: 16 SLGRTRILILASVILVPIMLFMAARFFV----------NSPHYDNLYVKL-------EVS 58 + L ++V ++ + D + L Sbjct: 2 EMDVVPRLGTIVGLVVVLVAIGLLLRWTFGHQKNVTLPTDDPDDPVATGLLTEVSRVPGK 61 Query: 59 DVNRIS-VALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGL 102 D RI L I I+ G ++ V V AR+ L+ L Sbjct: 62 DAARILRDRLRAQGIRATITPGSDDRGGFALLVFPKDVPDARVVLSRGAL 111 >gi|167736644|ref|ZP_02409418.1| flagellar MS-ring protein [Burkholderia pseudomallei 14] Length = 88 Score = 40.3 bits (92), Expect = 0.89, Method: Composition-based stats. Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 3/90 (3%) Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523 P GL D L +++ + R Sbjct: 1 RRAFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NR 57 Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553 +++ + + + A +++ W E Sbjct: 58 YERNLDYARTIARQDPKIVATVVKNWVSDE 87 >gi|262203602|ref|YP_003274810.1| amino acid adenylation domain-containing protein [Gordonia bronchialis DSM 43247] gi|262086949|gb|ACY22917.1| amino acid adenylation domain protein [Gordonia bronchialis DSM 43247] Length = 11233 Score = 40.3 bits (92), Expect = 0.90, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 15/219 (6%) Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174 D + G ++ R GEI I ++ G+ AA ++ PD + Sbjct: 10544 DDIEYMGRADAQVQLRGFRIEYGEIEAAILTVDGVTAAAARVIRPDN----RDEQLI-GY 10598 Query: 175 VMIRAINPSVYKSAEAIRHLVAAAVP-NLDMGDVTVLD-----STGKLLTANEMERNILG 228 + A AIR VA AVP + + V++ + GKL + + Sbjct: 10599 ALADAGTDLD---VHAIRERVARAVPGYMVPDRIVVVERLPLTANGKLDRSALPVPELPD 10655 Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288 + V A + E I A LG + + ++ + S Sbjct: 10656 TGEAGVVAADTDAERVIAAIFADVLGAEQVSV-TESFFDLGGNSLSATRVAARVSDALSA 10714 Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327 +S + + A TV+ + ++ +PR Sbjct: 10715 EVSVRDLFTTPTVRGLAATVDSGVAGLAPVTAVVPRPDH 10753 >gi|313231658|emb|CBY08771.1| unnamed protein product [Oikopleura dioica] Length = 660 Score = 40.3 bits (92), Expect = 0.92, Method: Composition-based stats. Identities = 38/384 (9%), Positives = 93/384 (24%), Gaps = 36/384 (9%) Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214 H+ + + + + + + + + + AAA + + +L Sbjct: 249 HLAGLNPALMQNQMEQNQMLNPLTSDPALLMAQIQKNQEMFAAAQAQENALNNPMLTPNS 308 Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 LL + + IQ +++ +++ + A + Sbjct: 309 MLL------QLAASMQRQLQSRIQQQVQTSMSSPMPAT--------SPHLTTPFS----T 350 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 + P E + S + Q + V+ + Sbjct: 351 AQIAPPSPVTEAVVEEVHSNAGSTSDQAPPQIVVKAELLGDEPSPASPAIVS-------- 402 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 N +IN R + + + A + I + Sbjct: 403 TENNDINGNENVEIPPPALTPRSTTS----GQEVVVEPASPAMGEETGKLQIADQTIATE 458 Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454 A+ R +I++ S ++ T + +G ++ Sbjct: 459 ASEAVETR--SISVKSERLDDSACRPKSTHSAHSAHSNNSTNLRKRKLEDPGIGHMMSEQ 516 Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514 L L + + P + + P AL + S + Sbjct: 517 LLQQRLAQAARPSIPFPFGLSQFQARDRRPSNGSSDELSPPAARAALGA----QMHASMS 572 Query: 515 LQSRINSYVSKQSDLRLLHMIEIN 538 LQ + +L ++ N Sbjct: 573 LQRSMQGGDFFNQLAQLQQLVGAN 596 >gi|330946649|gb|EGH47628.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 38 Score = 39.9 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 3/37 (8%), Positives = 15/37 (40%) Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 + + ++ + R A+++++W ++ Sbjct: 2 PSPTEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 38 >gi|167579439|ref|ZP_02372313.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH] Length = 85 Score = 39.9 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 3/72 (4%) Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P + GL D L +++ + + +++ + + + Sbjct: 16 DGPDDALALDGLPSPDKKQLAEEDEEHPALLAFESEK---NRYERNLDYARTIARQDPKI 72 Query: 542 FAKILRKWARSE 553 A +++ W E Sbjct: 73 VATVVKNWVSDE 84 >gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505] gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505] Length = 1142 Score = 39.9 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93 ++ A + S L + ++ I+ L A + + I G + VP V Sbjct: 431 VVAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEAAGLPYTIIGLGGMLYVPE--VADV 486 Query: 94 RIHLAAQGLPSSS 106 R L A P Sbjct: 487 RALLTAASDPERG 499 >gi|239607393|gb|EEQ84380.1| nuclear export protein Noc3 [Ajellomyces dermatitidis ER-3] Length = 656 Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 8/86 (9%), Positives = 28/86 (32%) Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + + K E + + P + D+ + + ++ +++ Sbjct: 29 KEKSRLPIKTAEGAIEHVAEPTVDDDSENPFDSDEDDAGEQPEPEVVEKPKPHIPAKVQI 88 Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547 +K+ R+ +I + E + + Sbjct: 89 LEAKEELARIAELINEDPEEHTGLFK 114 >gi|261200513|ref|XP_002626657.1| nuclear export protein Noc3 [Ajellomyces dermatitidis SLH14081] gi|239593729|gb|EEQ76310.1| nuclear export protein Noc3 [Ajellomyces dermatitidis SLH14081] gi|327352378|gb|EGE81235.1| nuclear export protein Noc3 [Ajellomyces dermatitidis ATCC 18188] Length = 697 Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 8/86 (9%), Positives = 28/86 (32%) Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + + K E + + P + D+ + + ++ +++ Sbjct: 70 KEKSRLPIKTAEGAIEHVAEPTVDDDSENPFDSDEDDAGEQPEPEVVEKPKPHIPAKVQI 129 Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547 +K+ R+ +I + E + + Sbjct: 130 LEAKEELARIAELINEDPEEHTGLFK 155 >gi|158422365|ref|YP_001523657.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS 571] gi|158329254|dbj|BAF86739.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS 571] Length = 566 Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 3/169 (1%) Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTIT---ITSMDFLENQLFNSGTVQVSFMD 430 D +A ++ + A S GD +T I+ + Q D Sbjct: 235 ERGDTPFTKDRIARMSVTRTGAFVQKSPAGDLLTGYAISDGEQDFPGFGWIVVAQQPAED 294 Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490 + + + + LLV R + + P Sbjct: 295 AFASAYHVAFRIIGYGAIALLVCVGLTLWFARRLGRPLRQLALAAEEIGRDPKITMLPRL 354 Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 G +++ + S + + S +Q L + + + Sbjct: 355 RGNADVMHLSYALRSLLRRLTSAETRYEMFSRKHEQDVAALKELADTDP 403 >gi|325120266|emb|CBZ55820.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 1998 Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 27/329 (8%), Positives = 82/329 (24%), Gaps = 18/329 (5%) Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274 ++ A + + ++ + N A+ +G A + ++ Sbjct: 1642 RIEAAWKQAHLMPTRNHTAENRYAPRWTNNKEPAVGGIVG---------ATATYNQREEA 1692 Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334 D LS+ P + + ++ +V ++EE Sbjct: 1693 SQKTDVPEMNLADEPLSES--------PATQQSTAEDEQAQLSERVVSQEEATVVPQEEE 1744 Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 + + + V + + + + ++ + E + V Sbjct: 1745 TVVPGDEETVMPQEQETVVPQEQETVVPQEQETVVPGDEETVMPQEEETVVPEGEETVMP 1804 Query: 395 ATGINSRRGDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453 + R D T+ + + V + + TV+ Sbjct: 1805 QEEETAMRQDDETVVPQEEETAMPEDEATVVPQEEARAMPQDDETVVPQEEETAMPEDEA 1864 Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513 + R ++A+ ++ + + Q+ Sbjct: 1865 TVVPREEARAMPQEEARAMPQEEARVMPQEEARAMPQEEARAIPQEEARAMPQEEARAMP 1924 Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERF 542 ++R ++ + ++ +EE Sbjct: 1925 QEEARAMPQEEARAMPQEETVVPEDEEAV 1953 >gi|167900848|ref|ZP_02488053.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177] Length = 86 Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 3/72 (4%) Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P GL D L +++ + R +++ + + + Sbjct: 17 DGPDDVLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYARTIARQDPKI 73 Query: 542 FAKILRKWARSE 553 A +++ W E Sbjct: 74 VATVVKNWVSDE 85 >gi|298712619|emb|CBJ33314.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1256 Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 22/206 (10%), Positives = 58/206 (28%), Gaps = 3/206 (1%) Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 E+NMP + P + T +++ E + + + Sbjct: 664 EENMPLGTAADSPKSPTGLGTAPTRDETAVEPKEAIGEESIPPGTAADSPKSPTGLRMTP 723 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428 + G+ + Q L + +V+ + G GD I ++ + Q + + Sbjct: 724 AQDDGQPSAQATNSIPLDH-DDVVAGSGGALGNDGDDIDSMLLNISKEQQAFEASEEAKL 782 Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488 + +A I + ++ + + K++ ++A Sbjct: 783 RKNEAGFWAEWIALTGPSLARRVLAL--EAETLPRLKEEAVAITGIANKALFGTRGDATA 840 Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRN 514 D +++ S + Sbjct: 841 EGVEEEVPDEEGGAQAHESSTSPKQG 866 >gi|167917105|ref|ZP_02504196.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215] Length = 83 Score = 39.9 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 3/72 (4%) Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P GL D L +++ + R +++ + + + Sbjct: 14 DGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYARTIARQDPKI 70 Query: 542 FAKILRKWARSE 553 A +++ W E Sbjct: 71 VATVVKNWVSDE 82 >gi|167892352|ref|ZP_02479754.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894] Length = 86 Score = 39.9 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 3/72 (4%) Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P GL D L +++ + R +++ + + + Sbjct: 17 DGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYARTIARQDPKI 73 Query: 542 FAKILRKWARSE 553 A +++ W E Sbjct: 74 VATVVKNWVSDE 85 >gi|167567366|ref|ZP_02360282.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 84 Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 4/83 (4%) Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 + G S + + +P+ L + + + Sbjct: 1 APALAGGSTAGGRESEPSASDAALPDGRPRLANVMPFLDDVELPPAD----SGVEVLIDH 56 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L + + ER A+++++W +S Sbjct: 57 LRTLSQKAPERVAEVVKQWIQSN 79 >gi|222476516|gb|ACM61988.1| phenylalanine ammonia-lyase [Lycoris radiata] Length = 708 Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 22/163 (13%) Query: 47 HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106 Y YVKLE L A I ++++GS++ V +AR+ A+ S Sbjct: 42 DYREAYVKLEG-------ATLKVAQIAA-VANDGSAVKVELDESARARVK-ASSDWVMDS 92 Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 N G + + FG TS + + AL+ E+ R + + + + G Sbjct: 93 MNKGTDSYGVTTGFGATS-HRRTKQGGALQKELIRFLNA-----------GIFESGHNSS 140 Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208 + + + + IR + + L ++T Sbjct: 141 NTLPASTTRAAMLVRINTLLQGYSGIRFEILEVITRLLNNNIT 183 >gi|289808417|ref|ZP_06539046.1| putative pathogenicity island lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 53 Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 I+ FF+ + +LY L + N++ L + +ID Sbjct: 6 IIFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHID 45 >gi|325090475|gb|EGC43785.1| nuclear export protein Noc3 [Ajellomyces capsulatus H88] Length = 685 Score = 39.5 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 29/86 (33%) Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + N K E + + P + D++ + + ++ +++ Sbjct: 58 KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEKPKPHVPAKVQI 117 Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547 +K+ R+ +I + E + + Sbjct: 118 LKAKEELARIAELINEDPEEHTGLFK 143 >gi|111021758|ref|YP_704730.1| adenylosuccinate lyase [Rhodococcus jostii RHA1] gi|110821288|gb|ABG96572.1| adenylosuccinate lyase [Rhodococcus jostii RHA1] Length = 473 Score = 39.5 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 33/105 (31%) Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + L FL T ++ L + R + K+ V + + L +D Sbjct: 362 LTRYLPFLATTKVLMALVRAGVGRETAHEVIKEHAVAVALAMREEGREPDLLDRLAADDR 421 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + LD + D + ++ +++ + E A Sbjct: 422 LPLDRAALDEALADKKAFIGAAEAQVATVVAQVQKLVDADPEAAA 466 >gi|284032881|ref|YP_003382812.1| histidine kinase [Kribbella flavida DSM 17836] gi|283812174|gb|ADB34013.1| histidine kinase [Kribbella flavida DSM 17836] Length = 433 Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 39/157 (24%), Gaps = 1/157 (0%) Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 +V+A G + + F F D + F + L Sbjct: 116 LVNAVLGFTLNLVSAVLFLASVFYLIYPFLVWVTPDGVFDRPFGGLFQLNPLTAFAMVPL 175 Query: 451 -LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 LV FL A +A + S + + ++ Sbjct: 176 GLVAFLIWSASGERLLRANATLAKSLLGPTESAKLAIRVRELAESRAETVDTQAAELRRI 235 Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546 + ++ S M+ + E+ A +L Sbjct: 236 ERDLHDGAQARLAALSMSLGMAEEMVARDPEQAAALL 272 >gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 886 Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93 ++ A + S L + ++ I+ L EA + + I G + VP V Sbjct: 430 VIAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEEAGLPYTIVGLGGMLYVPE--VADV 485 Query: 94 RIHLAAQGLPSSS 106 R L P Sbjct: 486 RALLTVASDPERG 498 >gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 1146 Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 4/73 (5%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93 + A + L + + I+ L A + + I G + VP V Sbjct: 427 VAAFLAERWSPGAEMAVL--CRTRTQMEPIAAELEAAGLPYTIVGLGGMLYVPE--VADV 482 Query: 94 RIHLAAQGLPSSS 106 R L A P Sbjct: 483 RALLTAASDPERG 495 >gi|134096875|ref|YP_001102536.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291006682|ref|ZP_06564655.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133909498|emb|CAL99610.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 330 Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 71 NIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKVNSFGLTSFMQE 128 I F + + V S GK+ LA GL P + SG FD GL+ + Sbjct: 26 GISFDVEPGRTVGLVGESGCGKSVTSLAIMGLLPPRGAEVSGSITFDGTELLGLSRQELD 85 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIV 157 R R L + S++ +V+ V + Sbjct: 86 KRRGRDLSMVFQDPLTSLNPVVSIGVQVA 114 >gi|242238499|ref|YP_002986680.1| short chain dehydrogenase [Dickeya dadantii Ech703] gi|242130556|gb|ACS84858.1| short-chain dehydrogenase/reductase SDR [Dickeya dadantii Ech703] Length = 258 Score = 39.1 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 8/108 (7%) Query: 21 RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 + +L + I L A ++ Y L DV R+ L ID + ++ Sbjct: 2 QKAVLITGCSSGIGLIAA--QYLQQRGYRVLAACRRPEDVARM-NTLGFEGIDLDLDNSA 58 Query: 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 S A I L L +N+GY L+ +++ Q+ Sbjct: 59 SV-----KQAAAAVIALTGNRLYGLFNNAGYGLYGPLSTITRRQLEQQ 101 >gi|226364288|ref|YP_002782070.1| adenylosuccinate lyase [Rhodococcus opacus B4] gi|226242777|dbj|BAH53125.1| adenylosuccinate lyase [Rhodococcus opacus B4] Length = 473 Score = 38.7 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 33/105 (31%) Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498 + L FL T ++ L + R + K+ V + + L +D Sbjct: 362 LTRYLPFLATTKVLMALVRAGVGRETAHEVIKEHAVAVALAMREQGKEPDLLDRLAADDR 421 Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543 + LD + D + ++ +++ N E A Sbjct: 422 LPLDRAALDEALADKKAFIGAAEAQVATVVAQVQKLVDANPEAAA 466 >gi|261260688|gb|ACX55030.1| FliF [Bacillus amyloliquefaciens] Length = 78 Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 15/41 (36%) Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ +L M + E FAK+LR W + Sbjct: 38 PDINEEKIETEETVRRKQLEKMAKEKPEDFAKLLRSWLDED 78 >gi|315659528|ref|ZP_07912389.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315495261|gb|EFU83595.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 1632 Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 24/262 (9%), Positives = 60/262 (22%), Gaps = 5/262 (1%) Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 + + S S ++A + V A T ++S Sbjct: 45 AQSNSSAKVSDKVATEQSASTSQEADSSQQTAASNAQNVQTAPEQDKATPTTEVNSNNNQ 104 Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 + + + + E K + + S + + Sbjct: 105 TDSKHVAPQKEQNQTATQTESKKETAQTQAKTEEKAVSDNKKASEDSDDKATSK--ETDE 162 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 DS S + + S S + P + + + Sbjct: 163 NKTDDSVDTNSNITTPVYDTTRARAATSVPLASSLDSDASAAENAEPPAEFIDKYNKSTN 222 Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396 + ++Y + V + + A Q + + + + S T Sbjct: 223 ---RSQLVHDLLAESYSETDVRAIVNRLNIDFNKTDAKKAFQAIMYAGIQYAKEQTSLYT 279 Query: 397 GINSRRGDTITITSMDFLENQL 418 + GD + + + + Sbjct: 280 TYATIPGDGVNVNNTEIGSVAE 301 >gi|323965442|gb|EGB60897.1| Ig domain-containing protein [Escherichia coli M863] Length = 1746 Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 51/398 (12%), Positives = 119/398 (29%), Gaps = 42/398 (10%) Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGK-----ARIHLAAQGLPSSSSNSGYELFD 115 N IS E I + NGS+ V + V + +AA S+ ++ G L Sbjct: 809 NMISQVAEENTISATL-PNGSTQRVTAKFVSDSNTPKLKQLVAAPDTISAGNSQGSTLTA 867 Query: 116 KVNSFGLTS-FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-----KIGA 169 V F ++ V + ++ T + ARVH+ G++ + Sbjct: 868 TVTDFHNNPLKDMKVNFVAPTDSQLDNTTATTDQSGIARVHLTSSKAGNYTVDASLEADK 927 Query: 170 RPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL----DSTGKLLTANE-MER 224 SV + + I + + + + VT+ D G L + Sbjct: 928 NIHQSVTVTVVPNREQSVI--ILNAGSGSTIANNTDTVTLTASVKDVYGHSLPDEDVKFT 985 Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAFLG--VDNFRSAVVAELNMDTQQIR-----EIV 277 + + + + A+ G F N + + Sbjct: 986 LPASMTGNFTLSSDTARTDSNGNAVVTLRGTKAGEFTVTATLSRNNTSANQLVYFIGDTS 1045 Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337 + S+ + ++ + + QN + D++V + E +N Sbjct: 1046 SAQLQPLTASLNTIVAGNSTGSTLTATILDAYQN--PLKDQQVTFQSNDVTLSGTEVTTN 1103 Query: 338 YEINTKSIATTHDNYKLERL-------------SIAVVVNKGRLTEVLGRSADQGKIDSY 384 + I T++ + + S++V+ ++ + A++ + Sbjct: 1104 TQGQATVIMTSNIAGQHNVVVSRKAQSSDNKTFSLSVLPDESSAKIISITGAEKTIMVGE 1163 Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422 + V A G + ++++ + ++ Sbjct: 1164 NITLRIHVQDAFNNVIA-GQRVRLSALPTANITIDDTA 1200 >gi|301159183|emb|CBW18698.1| exodeoxyribonuclease VIII [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323130970|gb|ADX18400.1| gifsy-1 prophage RecE [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 1066 Score = 38.7 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 39/365 (10%), Positives = 93/365 (25%), Gaps = 13/365 (3%) Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248 + IR + A N+ + +D +L A + + Sbjct: 476 QKIRAELHEARKNIPPKNP--VDVGKQLAAARGEYVEGISDPNDPKWVKTETSQPASEPE 533 Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE----S 304 L +G F V A + + E + S V+ S + Q + Q Sbjct: 534 LVKNVGNGIF--DVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEGDLG 591 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH-----DNYKLERLSI 359 + + + + + + E Q N + + + + E + Sbjct: 592 TGKEAVTVENQNQAETHQNNDSVSQSEPEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPN 651 Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419 V ++ + A + + K + G+ + + ++ + Sbjct: 652 EVYHAANGISSTQVKDARVSLMYFNARHVEKTIVKERSPVLDMGNLVHVLALQPENLEAE 711 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 S ++ + L++ + AL +N + +G Sbjct: 712 FSVEPEIPEGAFTTTATLREFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVD 771 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 + + ++ N S D L + IN Sbjct: 772 ETYASYEQLPEEFQRIENGTKHTATAMKACIKEYNATLPAPVKTSGSRDALLEQLAIINP 831 Query: 540 ERFAK 544 + A+ Sbjct: 832 DLVAQ 836 >gi|332095487|gb|EGJ00503.1| flagellar M-ring protein domain protein [Shigella dysenteriae 155-74] Length = 70 Score = 38.7 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 22/68 (32%) Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547 AV + + + + ++ R+ M + + A ++R Sbjct: 3 AVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGTEVMSQRIREMSDNDPRVVALVIR 62 Query: 548 KWARSEIE 555 +W ++ E Sbjct: 63 QWINNDHE 70 >gi|218458071|ref|ZP_03498162.1| D-amino acid dehydrogenase small subunit [Rhizobium etli Kim 5] Length = 273 Score = 38.7 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 11/136 (8%) Query: 51 LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109 L+ + D + AL+ I + + D I V ++ R + GL + + Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDRDGCIRVEPALRH-VRDKIVG-GLLTPKDET 197 Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169 G + F N+ + + TI+++ + A RV V+ R+ Sbjct: 198 G-DCFKFTNALAAKAEALGVRFAY------GTTIKALD-VEAGRVRGVVTARDPDRERER 249 Query: 170 RPTASVMIRAINPSVY 185 +V++ + S Sbjct: 250 MSADAVVVALGSYSPL 265 >gi|167561147|ref|ZP_02354063.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147] Length = 82 Score = 38.4 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 3/72 (4%) Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541 P + GL D L + + + + +++ + + + Sbjct: 13 DGPNDAIALDGLPSPDKKQLADEDDEHPALLAFESEK---NRYERNLDYARTIARQDPKI 69 Query: 542 FAKILRKWARSE 553 A +++ W E Sbjct: 70 VATVVKNWVSDE 81 >gi|325066922|ref|ZP_08125595.1| DNA/RNA helicase [Actinomyces oris K20] Length = 440 Score = 38.4 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 4/73 (5%) Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93 + A + L + + ++ L A + + I G + VP V Sbjct: 18 VAAFLAERWSPGAEMAVL--CRTRAQMEPVAAELEAAGLPYTIIGLGGMLYVPE--VADV 73 Query: 94 RIHLAAQGLPSSS 106 R L P Sbjct: 74 RALLTTASDPERG 86 >gi|225555901|gb|EEH04191.1| nuclear export protein Noc3 [Ajellomyces capsulatus G186AR] Length = 685 Score = 38.4 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 28/86 (32%) Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + N K E + + P + D++ + + + +++ Sbjct: 58 KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEKPKPYVPAKVQI 117 Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547 +K+ R+ +I + E + + Sbjct: 118 LEAKEELARIAELINEDPEEHTGLFK 143 >gi|226311228|ref|YP_002771122.1| phenylalanyl-tRNA synthetase beta chain [Brevibacillus brevis NBRC 100599] gi|226094176|dbj|BAH42618.1| phenylalanyl-tRNA synthetase beta chain [Brevibacillus brevis NBRC 100599] Length = 807 Score = 38.4 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 26/237 (10%) Query: 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64 ++ + + ++ + A V + +N L + SDV+ I Sbjct: 381 ERAAALIQQLSGATVSKGISSAVVSEAAPAVVSVTLAKINQH----LGTDMSASDVSPIF 436 Query: 65 VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124 L + ++ + +++VP+ I L + + GY+ G T+ Sbjct: 437 ERLQ---FPYEVAGDKWTVTVPTRRGD---ITLPEDLVEEVARLYGYDNIPTSLPSGSTT 490 Query: 125 FMQEITRVRALEGEIARTIQSI-------SGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 Q E ++ RTI+ I A VH + + ++M+ Sbjct: 491 QGQ-----LTKEQQLRRTIRHHLIGTGMNEAISYALVHPDRVEAVAGLHQEKVNPVALMM 545 Query: 178 RAI---NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL 231 + ++ VA + DV + + LT E + + L Sbjct: 546 PMSEDHSVLRTSLIPSLLETVAYNKNRQN-HDVAIFELGRVFLTKEETLTQLPEERL 601 >gi|317500710|ref|ZP_07958928.1| beta-galactosidase BbgIII [Lachnospiraceae bacterium 8_1_57FAA] gi|316897904|gb|EFV19957.1| beta-galactosidase BbgIII [Lachnospiraceae bacterium 8_1_57FAA] Length = 1936 Score = 38.4 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 47/187 (25%), Gaps = 15/187 (8%) Query: 200 PNLDMGDVTVLDSTGKLLTANEM---------------ERNILGKSLSIVQAIQHEIEMN 244 +L V+V D G L+ + + S + Sbjct: 826 EDLSYLTVSVTDDKGNLVPNADNKVTFEVSGDGVLAGVDNGRPVDHQSYRDDNRKAFSGQ 885 Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304 + + + V A+ + D E S ++ + + Sbjct: 886 LVGIVQSTKSAGTITVKVKADGLEEQTVQITTEASSDGTTEAKAISSVKMSKNYYVKVGN 945 Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364 + + V + K ++ D E+Q N T + +++V VN Sbjct: 946 RPQLPAELDAVLNDKSEAKGNVTWEDVAEDQINQSGTFSVTGTVTVAGVDKAETVSVNVN 1005 Query: 365 KGRLTEV 371 Sbjct: 1006 MIDTVAA 1012 >gi|313650160|gb|EFS14573.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T] gi|332756094|gb|EGJ86447.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70] gi|332757323|gb|EGJ87660.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71] gi|332757504|gb|EGJ87839.1| flagellar M-ring protein domain protein [Shigella flexneri K-671] gi|332766676|gb|EGJ96880.1| flagellar M-ring FliF basal-body MS(membrane and supramembrane)-ring and collar domain protein [Shigella flexneri 2930-71] gi|333003262|gb|EGK22808.1| flagellar M-ring protein domain protein [Shigella flexneri K-218] gi|333017640|gb|EGK36952.1| flagellar M-ring protein domain protein [Shigella flexneri K-304] Length = 53 Score = 38.4 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 6/31 (19%), Positives = 15/31 (48%) Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555 + R+ M + + A ++R+W ++ E Sbjct: 23 EVMSQRIREMSDNDPRVVALVIRQWINNDHE 53 >gi|154276208|ref|XP_001538949.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150414022|gb|EDN09387.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 646 Score = 38.4 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 29/86 (33%) Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + N K E + + P + D++ + + ++ +++ Sbjct: 29 KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEQSKPHVPAKVQI 88 Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547 +K+ R+ +I + E + + Sbjct: 89 LEAKEELARIAELINEDPEEHTGLFK 114 >gi|82940561|emb|CAJ44290.1| putative flagellar M-ring protein FliF [Rhizobium leguminosarum bv. viciae] Length = 78 Score = 38.4 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 32/78 (41%) Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537 + P S A LM + + + N V + + +L M+EI Sbjct: 1 ELPDFAPASGAAGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSRMVEI 60 Query: 538 NEERFAKILRKWARSEIE 555 NEER AKILRKWA + Sbjct: 61 NEERAAKILRKWAIDDAA 78 >gi|110681345|ref|YP_684352.1| hypothetical protein RD1_4230 [Roseobacter denitrificans OCh 114] gi|109457461|gb|ABG33666.1| hypothetical protein RD1_4230 [Roseobacter denitrificans OCh 114] Length = 1025 Score = 38.4 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 55/440 (12%), Positives = 121/440 (27%), Gaps = 27/440 (6%) Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV----- 175 + T R L GE+A T+ ++ R + P A Sbjct: 202 SSADAKEAQTLDRRLTGELAHTVSRALTLLETRTEHAATQDAPSGQQSGHPQAGQPDQVP 261 Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235 + A N + S I + AA+ D + + ++ L+ + Sbjct: 262 VTEASNAAATTSPPDIARDLHAALNGSDAFSLRLTNARKHLIHGLLQAGVPGAVARERSF 321 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSA-VVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294 A+ H L FL + + ++ V E ++ P+ V S Sbjct: 322 ALLHR--------LLPFLDIGSGAASLVSPEQPQTAAEVARSQASPEKSVNSSTVSPTTP 373 Query: 295 QRS--ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352 + + A + + S + E + S T + Sbjct: 374 SGNLPQAKGAHGAPEATKAHQIEPRQNSQPDASEVRPPEPERDRAVSNPSPSQHETAEPA 433 Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412 + A+++ + + + LG + D +A++ + +A S G + + Sbjct: 434 AASDEADALMLTE--IAQALGIRPGETAKDVCIAQLMQSPTAVFDAASDLG-ALNVLVRL 490 Query: 413 FLENQLFN------SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GLHALRRLH 464 + Q + S + + AT A+ L L L Sbjct: 491 LAQAQSDAGPLLAKAPLEADSIAALFASDPATFAKAVAQLTTADAFALARRLLPPGATLL 550 Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524 ++ + L+ A+ G + + S ++ + Sbjct: 551 IAHLSRLRDSAKSPRLAMQQAVLALLNGDLLDFEDLAQRVETPAEKMSPAERTGGETTAE 610 Query: 525 KQSDLRLLHMIEINEERFAK 544 + + + + E A+ Sbjct: 611 EDGATERENPSDPDPEAAAQ 630 >gi|239917771|ref|YP_002957329.1| predicted periplasmic solute-binding protein [Micrococcus luteus NCTC 2665] gi|281413735|ref|ZP_06245477.1| predicted periplasmic solute-binding protein [Micrococcus luteus NCTC 2665] gi|239838978|gb|ACS30775.1| predicted periplasmic solute-binding protein [Micrococcus luteus NCTC 2665] Length = 422 Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 44/367 (11%), Positives = 92/367 (25%), Gaps = 53/367 (14%) Query: 15 TSLGRTRILILASVILVPIMLFMAARF--FVNSPHYDNL------YVKLEVSDVNRISVA 66 GR R ++ +LV + + F++ P + + + D+ ++ Sbjct: 77 RGAGRRRTALVLGTVLVAFAVVVGLIVRGFLSGPDHTAVEGDEVTFSVEPGEDLGSVAAR 136 Query: 67 LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126 L A I V S+ + GL S E + + Sbjct: 137 LDRAGI------------VGSARAFERAARDTGSGLVRSGDFVLRERMPAAEALAVLQGA 184 Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186 + L R + + + A + A R P Sbjct: 185 TDGAVHYVLVERGRRLTEVLDAVAEA---------TGLPREELEAAAQDPTRYGVPGEAG 235 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246 + E L A + V + G++L A ++L++ + + + I Sbjct: 236 TLEG--WLDAGEY------RLPVDATAGQVLDALIRPTLTELEALNVRDPAEQQRVLTIA 287 Query: 247 KALAAFLGVDNFRSAVVAELNM---DTQQI------REIVYDPDSKVERSIRLSKDAQRS 297 L A +++ A +N D + V S + S Sbjct: 288 SILEAEALPQDYQQVAGAIVNRLAPDNTETHGLLQIDATVTYGLGVRSLSFTSGQRQDAS 347 Query: 298 E-------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 P + + + + + + E + Sbjct: 348 NPYNTYVHPGLPPGPIGMPSDAAVEAALDPAETDAYYWVTTDIGTGHTEFSRTYEEHQQH 407 Query: 351 NYKLERL 357 L+R Sbjct: 408 VRTLQRY 414 >gi|330953275|gb|EGH53535.1| type III secretion component [Pseudomonas syringae Cit 7] Length = 128 Score = 38.0 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDST 213 H+V+PD +++ + +ASV++R + I+ LVA + L V+V Sbjct: 2 HVVLPDNDLLKRVISPSSASVLVRYDPRTDINVLIPQIKTLVANGISGLGYDGVSVTAIK 61 Query: 214 GKLLTANEMERNILG 228 L + + Sbjct: 62 AALPDKAGAQPQLAS 76 >gi|185132651|ref|NP_001117146.1| hepatocyte nuclear factor 1-alpha [Salmo salar] gi|6647562|sp|Q91474|HNF1A_SALSA RecName: Full=Hepatocyte nuclear factor 1-alpha; Short=HNF-1-alpha; Short=HNF-1A; AltName: Full=Transcription factor 1; Short=TCF-1; AltName: Full=sHNF1 gi|683715|emb|CAA55985.1| HNF1 [Salmo salar] Length = 559 Score = 38.0 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 1/94 (1%) Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + L +++ V L ++ G D + + D Sbjct: 24 LIWALLGSGLSREVLVHALGELERERVTPGAEKGD-RGDGESSEEGEMDFPPPIFQELEA 82 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + + + +++ + R AK+++ + + Sbjct: 83 LAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQ 116 >gi|297804512|ref|XP_002870140.1| hypothetical protein ARALYDRAFT_493210 [Arabidopsis lyrata subsp. lyrata] gi|297315976|gb|EFH46399.1| hypothetical protein ARALYDRAFT_493210 [Arabidopsis lyrata subsp. lyrata] Length = 884 Score = 38.0 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 26/250 (10%), Positives = 69/250 (27%), Gaps = 15/250 (6%) Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDN-----YKLERLSIAVVVNKGRLTEVLGRSADQ 378 +K+++Q++ E +T S T + ++L ++ Sbjct: 574 DENSQENKEDQQTDAENSTASNTTAEEPAVVDLGTEKKLKKRTFRIPLKVVVEKTVGPGA 633 Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSM--DFLENQLFNSGTVQVSFMDILSRHF 436 LAE + A + R T + + ++ T + + Sbjct: 634 PFTKESLAEAKIKLEALDKKDRERRRTAELKNNLESYIYATKEKLETPEFEKVSTQEERK 693 Query: 437 ATVINALVFLVGTLLVTFLGLHALRR---LHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493 A V + LL L + + + +DA E + S Sbjct: 694 AFVEKLDEACINFLLNYIYYLVPMVQDWLYMDGEDANATEFEERLDSLKAIGSPISFRSE 753 Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 + + + + + + ++ + + A+ ++ W Sbjct: 754 ELTARPVAIEYARKYLTELKEIIKEWETNKTWLPKEKIDEVSKE-----AEKVKSWLDKN 808 Query: 554 IEDRYTQHIS 563 + ++ +S Sbjct: 809 VAEQEKTSLS 818 >gi|320324657|gb|EFW80731.1| general secretion pathway protein GspH [Pseudomonas syringae pv. glycinea str. B076] gi|320328767|gb|EFW84766.1| general secretion pathway protein GspH [Pseudomonas syringae pv. glycinea str. race 4] Length = 153 Score = 38.0 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 15/107 (14%) Query: 16 SLGRTRILILA--SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73 S+ R L V+LV I + A P L D R++ L A I+ Sbjct: 2 SMDTQRGFTLIELMVVLVIIGIVSATVSMSIKPDPAALL----RKDAERLAHMLHTAQIE 57 Query: 74 FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+ ++ V G AR A QGL GY+ F Sbjct: 58 ARVDGRPITLLVDDKGFGFARR--AEQGL-------GYDRFMNDPQL 95 >gi|299531177|ref|ZP_07044589.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44] gi|298720880|gb|EFI61825.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44] Length = 1037 Score = 38.0 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 71/562 (12%), Positives = 147/562 (26%), Gaps = 68/562 (12%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + + +V + +++ + ++ +L+ D + IS Sbjct: 524 AKRRMAVIAVFVSVLVVAGVSAKWLG----TEFLPELDEGDAYVLVQM------PASISL 573 Query: 79 NGSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ++ R+ L QG P S +++ E + + Sbjct: 574 EKG-----QEVLRDVRLRLKVFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKPHGD 626 Query: 129 ITR---VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 + AL E+ T+ I G+ + P S + + V+++ P Sbjct: 627 WRKGLTKPALIEEMRATLGEIPGVAF---NFAQPIRDSVEESTSGARGQVVLKLFGP-DI 682 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 + I + V +D V+D L + + + A Q + Sbjct: 683 PTLRGILQQTKSLVKGID----GVVDLD---LYRDAPAPQVHVQFDRQALARQGIAMEDA 735 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 K L L N A +R + D E IR S P + Sbjct: 736 QKTLEVAL-AGN--VATTLWEGEFPVPVRVRLPYVDRMDEERIRNIAIPLPDGGSVPLGS 792 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V S E + D + ++ + Sbjct: 793 VGTVSMKIGNSSIFREGNARYMALKFNVE------GRDIGSVVKDTLATFKQNVKLPEGY 846 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINS---RRGDTITITSMDFLENQLF 419 + G +Q + + L + + + A + R I + F Sbjct: 847 QAVWG--GEWENQQRAAARLKVVVPLSLVIVYALLFGALGQARSAGIILLCAPFAMVG-- 902 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++ +++ I L + L+ + LRR E + + Sbjct: 903 GIAALHLAHIELSISAAIGFIALLGQVALAGLLVVSAVEDLRRQGMPLMQALIEGAAERM 962 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 S ++ GL+P S S + + + L + + Sbjct: 963 RSIILVALLALLGLLPMALSTGVGSETQRPFASVIVGGMVVLPLVALVLLP-VLYALLGP 1021 Query: 540 ERFAKILRKWARSEIEDRYTQH 561 + E D Q Sbjct: 1022 -------KSMLTQEERDESAQD 1036 >gi|223649048|gb|ACN11282.1| Hepatocyte nuclear factor 1-alpha [Salmo salar] Length = 558 Score = 38.0 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 1/94 (1%) Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518 + L +++ V L ++ G D + + D Sbjct: 24 LIWALLGSGLSREVLVHALGELERERVTPGAEKGD-RGDGESSEEGEMDFPPPIFQELEA 82 Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552 + + + + +++ + R AK+++ + + Sbjct: 83 LAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQ 116 >gi|156839187|ref|XP_001643287.1| hypothetical protein Kpol_1027p3 [Vanderwaltozyma polyspora DSM 70294] gi|156113891|gb|EDO15429.1| hypothetical protein Kpol_1027p3 [Vanderwaltozyma polyspora DSM 70294] Length = 1036 Score = 38.0 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 39/333 (11%), Positives = 96/333 (28%), Gaps = 44/333 (13%) Query: 107 SNSGYELFDKVNS--------FGLTSFMQEITRVRALEGEIARTIQSIS---------GI 149 N +E+ ++ + F ++ F ++T +RA + +++ + + Sbjct: 496 GNELFEILFQLTNQIDKVVELFKISQFRDQLTLLRASLSHLISSVRYYAVYGEILPKITV 555 Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209 AA ++ P + + E+I + ++ + ++++ Sbjct: 556 QAAAAELIFALCKLISVGKITPNDNFDLTLNATLNNTEDESIPNSPVRSIASSSRPNISI 615 Query: 210 LDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN-M 268 L + E K L I Q +E G F S + Sbjct: 616 SIENSSFLEDDGQEEISPVKPLKITQKANRILE---KSTFRKPSGTSMFSSILETRPTSK 672 Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 ++I D +S++ S A +S T+ Q + K Sbjct: 673 SNEEISSKKIDRQDNNSKSVKSSIRAIQS--------PTITQEGYNNDPEKNKGIGLGIV 724 Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 + E ++ +T S + ++ ++ S + + + +I Sbjct: 725 SS---ESPAFKADTSSENHSSNSPTIKDESTS------------MEPKVNTVDFATVRKI 769 Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNS 421 + R D++ + D Sbjct: 770 ESPHLNTNMKSIDRDDSVKVNGPDISVTSPDTE 802 >gi|46205379|ref|ZP_00048615.2| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotein [Magnetospirillum magnetotacticum MS-1] Length = 101 Score = 38.0 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%) Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525 A +G + ++ G + + + L + +++ Sbjct: 11 ALAAPEGAPALAAGALSADAAALAAPGAVAAGAALPGEAPKLPAPGVAGLLEELEDKMAR 70 Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEI 554 RL +I+INEE+ A +L++W E Sbjct: 71 SPQKRLEQLIDINEEQVAAVLKRWLMREE 99 >gi|328957266|ref|YP_004374652.1| hypothetical protein CAR_c09430 [Carnobacterium sp. 17-4] gi|328673590|gb|AEB29636.1| conserved hypothetical protein [Carnobacterium sp. 17-4] Length = 250 Score = 38.0 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 13/91 (14%) Query: 24 ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR-----------ISVALSEANI 72 IL + I++ + + FFV S Y L L ++ I L+E Sbjct: 7 ILIGCFIFFILVLLGSLFFVQSKTYQPLSEALNETESTNQYTVEESQDAIIFKPLNEQQS 66 Query: 73 DFRISDNGSSISVPSSMVGKARIHLAAQGLP 103 + G V LAA+G P Sbjct: 67 TSVLFYQGG--LVEEKSYSSIAAKLAAKGYP 95 >gi|229515171|ref|ZP_04404631.1| hypothetical protein VCB_002828 [Vibrio cholerae TMA 21] gi|229347876|gb|EEO12835.1| hypothetical protein VCB_002828 [Vibrio cholerae TMA 21] Length = 157 Score = 37.6 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 14/151 (9%) Query: 60 VNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117 N++ V L++ ++ +++ +G + V + KAR LA +L Sbjct: 13 SNKVIVLLNKNQVNAKLTQLKDGYGVLVDDAQEMKARELLAYYNF-YFEREDLNDLL--E 69 Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177 + F S ++ + EI + + I+ V + SV+I Sbjct: 70 SKFASLSKLEMVKSNFLQSREIYNKLSIMPNILRVSVVVT---------GEKAKRISVLI 120 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208 +++ ++ I + + D ++ Sbjct: 121 LSLSEISAENKSNIERFLKGVLNEEDKLTIS 151 >gi|194745592|ref|XP_001955271.1| GF16318 [Drosophila ananassae] gi|190628308|gb|EDV43832.1| GF16318 [Drosophila ananassae] Length = 2634 Score = 37.6 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 29/272 (10%), Positives = 71/272 (26%), Gaps = 5/272 (1%) Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330 ++ P + +++A ++ T P+ A ++ K P+ + + + Sbjct: 2031 EVMSQTVAPHGATDDEAASTEEADQTPVTVAPQDAEKTPISVAPQDADKTPVTVAPQEDE 2090 Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390 K + + + K AT +++ V + D KI + +A I Sbjct: 2091 KTPATAVPKEDEKIPATETPE-DADKIPATSVPQEDEKIPATETPEDADKIPATIAPIVP 2149 Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450 V ++ S D + T S + + V + Sbjct: 2150 SVEPSSEKPSISED---VGEEGTESPIDDAEDTTDESAAGAKLKPPTSAPATDVPAESAV 2206 Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510 + D +K + + P +S +A + + Sbjct: 2207 TEAEIVAETAAPELEKDLPEKTSEEPEKVSEEPEKASEEPEKASEKPEMATEQPEKAGEE 2266 Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542 + + + E+ Sbjct: 2267 PEKATDEPEKATDEPEKASEEPEKATEEPEKV 2298 >gi|223997492|ref|XP_002288419.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975527|gb|EED93855.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1411 Score = 37.6 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 53/202 (26%), Gaps = 17/202 (8%) Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 + + +I +I + R + P A + AIR + Sbjct: 464 QKSYSISINAIQMLGTKRPIFFKESSTCLARRTMDPPGESSGEAEGLLPKAAITAIRTHL 523 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 ++ + ++V + ++L E + + L G Sbjct: 524 RSSCLTMLRHFISVTSGSHEILVNALTEVGMGSQ--------AERALQASKNQLNLMKGG 575 Query: 256 DNFRSAVVAELNMDTQ--QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT------ 307 R+ D R D+ + S R S + + Sbjct: 576 RAARNRAAVFYEWDQSADASRAEKRQRDTDDAEARVRSAKIARGLGSGVQLPTSMADACE 635 Query: 308 -VEQNMPHVSDRKVPLPRSLEN 328 V N+ ++ ++ P+ + Sbjct: 636 LVLLNLKNLPPKRPPVASTTHR 657 >gi|167835056|ref|ZP_02461939.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43] Length = 64 Score = 37.6 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 5/48 (10%), Positives = 16/48 (33%) Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553 ++ H L +++ + + + A +++ W E Sbjct: 16 EEDEEHPALLAFESEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 63 >gi|170107917|ref|XP_001885168.1| predicted protein [Laccaria bicolor S238N-H82] gi|164640009|gb|EDR04277.1| predicted protein [Laccaria bicolor S238N-H82] Length = 806 Score = 37.6 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 38/308 (12%), Positives = 80/308 (25%), Gaps = 38/308 (12%) Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202 I + + A H+ + + +P+ +V+ + A + Sbjct: 264 IVFLDNMTVAAAHVSGSLVVASWDPNLKPSINVLRKNDGTLGLSQVLAYK---------- 313 Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262 ++D +L N E I+ A + + A Sbjct: 314 ------LIDERPTILFGNGEEA-----QTDIMIATFKLPAYTAER-------ENEVVMAA 355 Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322 N T +I + + E S + + A E N P ++ Sbjct: 356 HVAHNQPTIEILQRGQQHTANPELLRDES-HVEWMAEPMAKPAGLEEGNQPQIA--IYDQ 412 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYK-------LERLSIAVVVNKGRLTEVLGRS 375 P + T N + + +T + + + + + + + Sbjct: 413 PPTSIVTSSTATTDNEVLTSAVSSTVNPPPTSAVSRTIPIASTASQLPVTATVGKPPMSA 472 Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435 A + IV A T + TI + + V D ++ Sbjct: 473 VTGTINQPPAATVTDIVPAVTSTTYQPSAATTIITAVDQPPTTAITSAVSQPLTDTAAQP 532 Query: 436 FATVINAL 443 + TV L Sbjct: 533 YMTVDQPL 540 >gi|6724256|gb|AAF26922.1|AF210843_19 polyketide synthase [Sorangium cellulosum] Length = 3798 Score = 37.6 bits (85), Expect = 6.3, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 14/182 (7%) Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440 EI +V+ ++ D + S +L + LS + ++ Sbjct: 1092 PQKSPTEIEPLVAELLSPDAE--DQLAFRSGRRHAARLVAAPPEGDVAPISLSAEGSYLV 1149 Query: 441 NALVFLVGTLLVTFLGLHA---LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497 + +G L+ +L L ++ GG+ +AV Sbjct: 1150 TGGLGGLGLLVARWLVERGARHLVLTSRHGLPERQASGGEQPPEARARIAAVEGLEAQGA 1209 Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR----LLHMIEINEERFAKILR-----K 548 + + + + L + I + + H+ E +E +LR Sbjct: 1210 RVTVAAVDVAEADPMTALLAAIEPPLRGVVHAAGVFPVRHLAETDEALLESVLRPKVAGS 1269 Query: 549 WA 550 W Sbjct: 1270 WL 1271 >gi|254393210|ref|ZP_05008365.1| ABC transporter substrate-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294811618|ref|ZP_06770261.1| ABC transporter substrate-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326440195|ref|ZP_08214929.1| ABC transporter substrate-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197706852|gb|EDY52664.1| ABC transporter substrate-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294324217|gb|EFG05860.1| ABC transporter substrate-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 269 Score = 37.2 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 18/131 (13%) Query: 78 DNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G++++VP+ +AR L GL +G E + ++ Sbjct: 127 KDGATVAVPNDTTNEARALRLLEQNGLIKLKPGTGAEA-------TPKDIAENPKNLKIK 179 Query: 136 EGEIARTIQSISGIVAARVH--------IVMPDMGSFRKI-GARPTASVMIRAINPSVYK 186 E E A+T + + + AA ++ + + P + + + Sbjct: 180 EVEAAQTPRVLGEVDAAVINGNYAVEAKLSPKKDSIALESAENNPYGNFLAVKKGDENDE 239 Query: 187 SAEAIRHLVAA 197 + + L+++ Sbjct: 240 QVKKLAKLLSS 250 >gi|315633769|ref|ZP_07889059.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter segnis ATCC 33393] gi|315477811|gb|EFU68553.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter segnis ATCC 33393] Length = 1520 Score = 37.2 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 24/185 (12%) Query: 395 ATGINSRRGDTITIT---SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT-- 449 A+ + ++RGD +T+T S +F+ + + G + +D+L A AL + Sbjct: 855 ASALTNQRGDKVTVTHQASGNFVLDVKDSGGEAKYEKLDLLDASKAIRDPALKVSLARNH 914 Query: 450 LLVTFLGLHAL----------RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499 + + + +L N + K + + + I Sbjct: 915 VDLGAYVYSLIEQDGIFRLYNAKLENEKIEAERIAKEKEAARLAEEARQRELARLEAERI 974 Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR-Y 558 A + Q R + + ++ +++++ + + ER AK E + R Sbjct: 975 AKEKEEQARLEAERIAKEKEDARLAEEARQ--RELARLEAERIAK------EKEEQARLE 1026 Query: 559 TQHIS 563 + I+ Sbjct: 1027 AERIA 1031 >gi|237753397|ref|ZP_04583877.1| septum formation protein [Helicobacter winghamensis ATCC BAA-430] gi|229375664|gb|EEO25755.1| septum formation protein [Helicobacter winghamensis ATCC BAA-430] Length = 792 Score = 37.2 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 24/291 (8%), Positives = 59/291 (20%), Gaps = 8/291 (2%) Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--DKK 332 E+ P K E + + S + S +S S P + D Sbjct: 38 ELEQTPPPKQEFAQQESLQKESSRKQAIKSYPKNLYAATPFSAYYDKEPVGTHDRLVDAS 97 Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392 Q Y ++ T Y + + + N + + + + Sbjct: 98 NFQKEYPDKKNTLPKTIFYYGDKVSTHPLSENSENMESKNAEVKNTEITNQTAQTLENTK 157 Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452 S TI + Q + S T+ Sbjct: 158 SENIIPQQEIP-QATIQTPQIQATPQIQEIVPQPEIIPQYSTIPNTIPTFGYGYAHYQEP 216 Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512 + ++ + P + Sbjct: 217 IQQITQPIVIEQTMESKILTTAPQQVAKPQEPQVTESIQAQQAPIQTPKQEMPPAQIPQL 276 Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQHIS 563 + + + ++ ++ +I++ T ++ Sbjct: 277 QEIAPQPVIQTQSVQTPQVR----QEPQQSVEIVKT-LEENAALLETLEMA 322 >gi|330881989|gb|EGH16138.1| general secretion pathway protein GspH [Pseudomonas syringae pv. glycinea str. race 4] Length = 151 Score = 37.2 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 15/106 (14%) Query: 17 LGRTRILILA--SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74 + R L V+LV I + A P L D R++ L A I+ Sbjct: 1 MDTQRGFTLIELMVVLVIIGIVSATVSMSIKPDPAALL----RKDAERLAHMLHTAQIEA 56 Query: 75 RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 R+ ++ V G AR A QGL GY+ F Sbjct: 57 RVDGRPITLLVDDKGFGFARR--AEQGL-------GYDRFMNDPQL 93 >gi|126433294|ref|YP_001068985.1| glutamate-1-semialdehyde aminotransferase [Mycobacterium sp. JLS] gi|257096483|sp|A3PUB7|GSA_MYCSJ RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; Short=GSA; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT gi|126233094|gb|ABN96494.1| glutamate-1-semialdehyde 2,1-aminomutase [Mycobacterium sp. JLS] Length = 438 Score = 37.2 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 6/91 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + LG S V + +A + Y L + ++ AL+ Sbjct: 288 EVMERLAPLGPVYQAGTLSGNPVAMAAGLATLRTADDAVYAALDKNADRL-AGLLTDALT 346 Query: 69 EANIDFRISDNGSSISV-----PSSMVGKAR 94 +A + R+ G+ +SV P AR Sbjct: 347 DAGVTHRVQRGGNMLSVFFTAEPVGDFATAR 377 >gi|294893480|ref|XP_002774493.1| serine/threonine-protein kinase chk2, putative [Perkinsus marinus ATCC 50983] gi|239879886|gb|EER06309.1| serine/threonine-protein kinase chk2, putative [Perkinsus marinus ATCC 50983] Length = 945 Score = 37.2 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 44/376 (11%), Positives = 107/376 (28%), Gaps = 46/376 (12%) Query: 76 ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +S G V + + A +GLP + + K+ +S V Sbjct: 525 LSRCGDIAEVVRKDLSDMVLF-AEEGLPDEAMAGLDSVKAKLQGMSASSEELHAHYVEF- 582 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195 EG++ + I + V+ + ++ I A K I V Sbjct: 583 EGKVQKIIVGLP-------TTVVGIPSAQQRE---------ITAKAIMDAKEV--IDSDV 624 Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255 + +++++S+ ++ M + ++LS +E ++ L Sbjct: 625 KMSTDG---PKISLVESSSSANDSSNMGNSSGRRTLSRRSKRANERLDSLLDRLRNLPSD 681 Query: 256 DNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313 SAV + + ++ E++ P + + S + + E Sbjct: 682 GKIISAVDGKGDAIDSEVAELLDLPFLAAGYVGGYSEKRKKPESSSDESAVVSDKELEAQ 741 Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373 +++ +D++E + + + + + V + + G Sbjct: 742 GERAAWSVSDETMKKSDEEESIPS-------RKSDMPSGSDSEATAQLAVTRKLVNNG-G 793 Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433 I + ++ R D I F + + S + + Sbjct: 794 SDPTAALIADSMRKLR------------RIDQILHKVTVFWQ-GVDQSVAKLSDMRENAA 840 Query: 434 RHFATVINALVFLVGT 449 R + + L Sbjct: 841 RLLSGTTKSARILAVF 856 >gi|108797670|ref|YP_637867.1| glutamate-1-semialdehyde aminotransferase [Mycobacterium sp. MCS] gi|119866757|ref|YP_936709.1| glutamate-1-semialdehyde aminotransferase [Mycobacterium sp. KMS] gi|123070668|sp|Q1BE73|GSA_MYCSS RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; Short=GSA; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT gi|257096484|sp|A1UAR1|GSA_MYCSK RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; Short=GSA; AltName: Full=Glutamate-1-semialdehyde aminotransferase; Short=GSA-AT gi|108768089|gb|ABG06811.1| glutamate-1-semialdehyde 2,1-aminomutase [Mycobacterium sp. MCS] gi|119692846|gb|ABL89919.1| glutamate-1-semialdehyde 2,1-aminomutase [Mycobacterium sp. KMS] Length = 438 Score = 37.2 bits (84), Expect = 7.3, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 6/91 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 + + LG S V + +A + Y L + ++ AL+ Sbjct: 288 EVMERLAPLGPVYQAGTLSGNPVAMAAGLATLRTADDAVYAALDKNADRL-AGLLTDALT 346 Query: 69 EANIDFRISDNGSSISV-----PSSMVGKAR 94 +A + R+ G+ +SV P AR Sbjct: 347 DAGVTHRVQRGGNMLSVFFTAEPVGDFATAR 377 >gi|207728004|ref|YP_002256398.1| transmembrane sensor histidine kinase protein [Ralstonia solanacearum MolK2] gi|206591248|emb|CAQ56860.1| transmembrane sensor histidine kinase protein [Ralstonia solanacearum MolK2] Length = 507 Score = 37.2 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 17/170 (10%) Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458 + G I + + + +D ++ +I ++ + +LV F Sbjct: 161 DRIHGAEIRVAYTYVQQPGDRPALVQVAETLDKRAQLANEIIKGVILPLAVILVWFGLTR 220 Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ------------ 506 L L+ I + + G + + T L+ + N L Q Sbjct: 221 GLAPLNAIQELIRARSPGDTSPIDEGAAPQELTPLVASFNELLGRLEQSVQTQKRFIADA 280 Query: 507 --DIFSHSRNLQSRINSYVSKQSDLRLLHM---IEINEERFAKILRKWAR 551 + + L+ + +QS L I + +R A ++++ Sbjct: 281 AHQMKTPLAGLRMQAELAQREQSPDELRRTLAHIADSSDRTAHLVKQLLS 330 >gi|213585522|ref|ZP_03367348.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 39 Score = 37.2 bits (84), Expect = 8.4, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216 K + I+++V+AAVP L +V + D +G L Sbjct: 4 KLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVL 38 >gi|160895468|ref|YP_001561050.1| CzcA family heavy metal efflux protein [Delftia acidovorans SPH-1] gi|160361052|gb|ABX32665.1| heavy metal efflux pump, CzcA family [Delftia acidovorans SPH-1] Length = 1034 Score = 37.2 bits (84), Expect = 8.4, Method: Composition-based stats. Identities = 63/515 (12%), Positives = 138/515 (26%), Gaps = 72/515 (13%) Query: 20 TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79 R ++ L ++ + ++ +L+ D L + IS Sbjct: 525 RRRAMIVIASLAILVAAGVSAAWLG----TEFLPELDEGDA----YVLVQM--PASISLE 574 Query: 80 GSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSF----GLTSF 125 ++ R+ L QG P S +++ E + G + Sbjct: 575 KG-----QEVLRDVRLRLKTFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKGHGEW 627 Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 + +T+ + +E + T+ I G+ + P S + + V+++ P Sbjct: 628 RKGLTKPQLIEQ-MRATLSEIPGVSF---NFAQPIRDSVEESTSGARGQVVLKVFGP-DI 682 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 +I V ++D V+D L + + + A Q Sbjct: 683 PQLRSILQQTVDLVKDID----GVVDLG---LYRDAPAPQVHVEFDRQSLARQGIAMETA 735 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 K L A L N P R + + + + Sbjct: 736 QKTLEAAL-AGNI------------STTLWEGEYPVPVRVRLPYVDRMDEERIRNIAIPL 782 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQS-----NYEINTKSIATTHDNYKLERLSIA 360 H + + + + N E + D + ++ Sbjct: 783 PNGGSVPLHSVGQVAIKIGNSSIFREGNARYMALKFNVE-GRDIGSVVKDTLATFKKNVK 841 Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINS---RRGDTITITSMDFL 414 + + G +Q + + L ++ I+ A + R I + F Sbjct: 842 IPEGYQAVWG--GEWENQQRAAARLKIVVPLSLIIVYALLFGALGQARSAGIILLCAPF- 898 Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 + + + +++ I L + L+ + LRR E Sbjct: 899 -TMVGGIAALHFAGIELSISAAIGFIALLGQVALAGLLVISAVEELRRQGMPMMQALVEG 957 Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509 + + S ++ GL+P S Sbjct: 958 AAERMRSIVLVALLALLGLLPMALSTGVGSETQKP 992 >gi|221069738|ref|ZP_03545843.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1] gi|220714761|gb|EED70129.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1] Length = 1037 Score = 36.8 bits (83), Expect = 8.5, Method: Composition-based stats. Identities = 72/562 (12%), Positives = 148/562 (26%), Gaps = 68/562 (12%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + +V + +++ + ++ +L+ D + IS Sbjct: 524 AKRRTAVIAVFVSVLVVAGVSAKWLG----TEFLPELDEGDAYVLVQM------PASISL 573 Query: 79 NGSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ++ R+ L QG P S +++ E + E Sbjct: 574 EKG-----QEVLRDVRLRLKVFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKPHGE 626 Query: 129 ITR---VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 + AL E+ T+ I G+ + P S + + V+++ P Sbjct: 627 WRKGLTKPALIEEMRATLGEIPGVAF---NFAQPIRDSVEESTSGARGQVVLKLFGP-DI 682 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 + +I + V ++D V+D L + + + A Q + Sbjct: 683 PTLRSILQQTKSLVRDID----GVVDLD---LYRDAPAPQVHVQFDRQALARQGIAMEDA 735 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 K L L N A +R + D E IR S P + Sbjct: 736 QKTLEVAL-AGN--VATTLWEGEFPVPVRVRLPYVDRMDEERIRNIAIPLPDGGSVPLGS 792 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V S E + D + ++ + Sbjct: 793 VGTVSMKVGNSSIFREGNARYMALKFNVE------GRDIGSVVKDTLATFKQNVKLPEGY 846 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINS---RRGDTITITSMDFLENQLF 419 + G +Q + + L + + + A + R I + F Sbjct: 847 QAVWG--GEWENQQRAAARLKVVVPLSLVIVYALLFGALGQARSAGIILLCAPFAMVG-- 902 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++ +++ I L + L+ + LRR E + + Sbjct: 903 GIAALHLAHIELSISAAIGFIALLGQVALAGLLVVSAVEDLRRQGMPLMQALIEGAAERM 962 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 S ++ GL+P S S + + + L + + Sbjct: 963 RSIILVALLALLGLLPMALSTGVGSETQRPFASVIVGGMVVLPLVALVLLP-VLYALLGP 1021 Query: 540 ERFAKILRKWARSEIEDRYTQH 561 + E D Q Sbjct: 1022 -------KNMLTQEERDESAQD 1036 >gi|264676160|ref|YP_003276066.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni CNB-2] gi|262206672|gb|ACY30770.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni CNB-2] Length = 1037 Score = 36.8 bits (83), Expect = 9.6, Method: Composition-based stats. Identities = 71/562 (12%), Positives = 146/562 (25%), Gaps = 68/562 (12%) Query: 19 RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78 R + +V + +++ + ++ +L+ D + IS Sbjct: 524 AKRRTAVIAVFVSVLVVAGVSAKWLG----TEFLPELDEGDAYVLVQM------PASISL 573 Query: 79 NGSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 ++ R+ L QG P S +++ E + + Sbjct: 574 EKG-----QEVLRDVRLRLKVFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKPHGD 626 Query: 129 ITR---VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185 + AL E+ T+ I G+ + P S + + V+++ P Sbjct: 627 WRKGLTKPALIEEMRATLGEIPGVAF---NFAQPIRDSVEESTSGARGQVVLKLFGP-DI 682 Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245 + I + V +D V+D L + + + A Q + Sbjct: 683 PTLRGILQQTKSLVKGID----GVVDLD---LYRDAPAPQVHVQFDRQALARQGIAMEDA 735 Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305 K L L N A +R + D E IR S P + Sbjct: 736 QKTLEVAL-AGN--VATTLWEGEFPVPVRVRLPYVDRMDEERIRNIAIPLPDGGSVPLGS 792 Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365 V S E + D + ++ + Sbjct: 793 VGTVSMKIGNSSIFREGNARYMALKFNVE------GRDIGSVVKDTLATFKQNVKLPEGY 846 Query: 366 GRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINS---RRGDTITITSMDFLENQLF 419 + G +Q + + L + + + A + R I + F Sbjct: 847 QAVWG--GEWENQQRAAARLKVVVPLSLVIVYALLFGALGQARSAGIILLCAPFAMVG-- 902 Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479 + ++ +++ I L + L+ + LRR E + + Sbjct: 903 GIAALHLAHIELSISAAIGFIALLGQVALAGLLVVSAVEDLRRQGMPLMQALIEGAAERM 962 Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539 S ++ GL+P S S + + + L + + Sbjct: 963 RSIILVALLALLGLLPMALSTGVGSETQRPFASVIVGGMVVLPLVALVLLP-VLYALLGP 1021 Query: 540 ERFAKILRKWARSEIEDRYTQH 561 + E D Q Sbjct: 1022 -------KNMLTQEERDESAQD 1036 >gi|240278606|gb|EER42112.1| nuclear export protein Noc3 [Ajellomyces capsulatus H143] Length = 221 Score = 36.8 bits (83), Expect = 9.8, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 29/86 (33%) Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521 + N K E + + P + D++ + + ++ +++ Sbjct: 58 KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEKPKPHVPAKVQI 117 Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547 +K+ R+ +I + E + + Sbjct: 118 LKAKEELARIAELINEDPEEHTGLFK 143 >gi|189238710|ref|XP_969341.2| PREDICTED: similar to AGAP009638-PA [Tribolium castaneum] gi|270010078|gb|EFA06526.1| hypothetical protein TcasGA2_TC009430 [Tribolium castaneum] Length = 3589 Score = 36.8 bits (83), Expect = 10.0, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 43/128 (33%), Gaps = 3/128 (2%) Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276 +T + + + + + EI + + +G ++ D ++ Sbjct: 3239 ITGEFQDMTMQKSQFVVTRGERAEIRKHEDSL---TIGNGKTEYITTSKETFDKTTPTKV 3295 Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336 V P + + R ++ + S T Q+ + +K+ + + + + Sbjct: 3296 VTSPATPGSINRRRHIESHITLGSDTAVMQTTNQSNYNTYTKKIDRQSTTGRNEVANKTT 3355 Query: 337 NYEINTKS 344 N ++K+ Sbjct: 3356 NVATDSKT 3363 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.306 0.113 0.256 Lambda K H 0.267 0.0346 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,335,004,019 Number of Sequences: 14124377 Number of extensions: 68844045 Number of successful extensions: 497938 Number of sequences better than 10.0: 2747 Number of HSP's better than 10.0 without gapping: 1849 Number of HSP's successfully gapped in prelim test: 898 Number of HSP's that attempted gapping in prelim test: 486523 Number of HSP's gapped (non-prelim): 4348 length of query: 563 length of database: 4,842,793,630 effective HSP length: 145 effective length of query: 418 effective length of database: 2,794,758,965 effective search space: 1168209247370 effective search space used: 1168209247370 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 83 (36.8 bits)