BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
         (563 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|170696757|ref|ZP_02887869.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M]
 gi|170138336|gb|EDT06552.1| flagellar M-ring protein FliF [Burkholderia graminis C4D1M]
          Length = 600

 Score =  415 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 234/561 (41%), Gaps = 25/561 (4%)

Query: 9   QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            F +  + L + R      L   + + + +      +  +P Y  LY  L   D   I  
Sbjct: 48  NFGQRLSGLAQMRGNPRAPLIFAVALLVAIVAGLFLWSRAPDYKVLYSNLSDRDGGAIIT 107

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI ++ S+ G +I VPS  V + R+ LA+QGLP S S  G+EL D    FG++ F
Sbjct: 108 ALQQANIPYKFSEAGGAILVPSEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQF 165

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            ++I   RALEGE+ RTI+S+S + +ARVH+ +P    F +    P+ASV++        
Sbjct: 166 AEQINYQRALEGELERTIESVSSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRAL 225

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
                 AI H+V++AVP + +  VT+LD  G LLT   +   +    L   Q I+   + 
Sbjct: 226 DEGQVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERSTQQ 285

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TS 300
            I+  LA   G  N  S V A+++    +     Y P+   +++   S+ +  +      
Sbjct: 286 RIDAILAPLFGSGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQG 345

Query: 301 QPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                     N P                   +   +D+K+  +NYE++           
Sbjct: 346 GASGVPGALSNQPPQPASAPINAPAGASGGVTTTPVSDRKDMTTNYELDKTVRHLEQPMG 405

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RLS+AVVVN  R+ +  G +  Q      LA++N++V  A G +++RGD++ + +  
Sbjct: 406 GIKRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAQRGDSVNVVNSP 465

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F      N+          +   +  +   L      L + F+ +    R          
Sbjct: 466 FTTALDPNADLP-WWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPVV 524

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                S   P  +          N  + +D+ + ++ +           +  +++     
Sbjct: 525 AAALPSPDEPILLDGIPAAERAGNAALEMDNGDAELQALENAK------HKYERNLEFAR 578

Query: 533 HMIEINEERFAKILRKWARSE 553
            +   + +  A +++ W   E
Sbjct: 579 SIARQDPKIVATVVKNWVTDE 599


>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040372|gb|ACT57168.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 563

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 563/563 (100%), Positives = 563/563 (100%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV
Sbjct: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF
Sbjct: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI
Sbjct: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE
Sbjct: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS
Sbjct: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA
Sbjct: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN
Sbjct: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL
Sbjct: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE
Sbjct: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540

Query: 541 RFAKILRKWARSEIEDRYTQHIS 563
           RFAKILRKWARSEIEDRYTQHIS
Sbjct: 541 RFAKILRKWARSEIEDRYTQHIS 563


>gi|209522223|ref|ZP_03270859.1| flagellar M-ring protein FliF [Burkholderia sp. H160]
 gi|209497337|gb|EDZ97556.1| flagellar M-ring protein FliF [Burkholderia sp. H160]
          Length = 555

 Score =  412 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 134/560 (23%), Positives = 231/560 (41%), Gaps = 27/560 (4%)

Query: 9   QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            F +  + L + R      L   I + + +      +  +P Y  LY  L   D   I  
Sbjct: 7   NFGQRLSGLAQMRGNPRAPLVFAIALLVAVVAGLFLWSRTPDYKVLYSNLSDRDGGSIIA 66

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI +++SD+G +I VP+  V + R+ LA+QGLP S S  G+EL D    FG++ F
Sbjct: 67  ALQQANIPYKLSDSGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQF 124

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--S 183
            ++I   R+LEGE+ RTI+SIS + +ARVH+ +P    F +    P+A+V++        
Sbjct: 125 NEQINYQRSLEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSAAVLVNLYPGRVL 184

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
                 AI H+V++AVP + +  VT+LD  G LLT       +    L   Q I+   + 
Sbjct: 185 DEGQVVAITHMVSSAVPEMPVRGVTILDQDGNLLTQPSNGSGLDATQLKFRQQIERNTQQ 244

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TS 300
            I+  LA   G  N RS V A+++    +     Y P+   +++   S+ +  +      
Sbjct: 245 RIDAILAPLFGPGNARSQVSADIDFSHSEQTSENYGPNGSPQQAAIRSQQSSSATEMSQG 304

Query: 301 QPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                     N P                  +   +D K+  +NYE++            
Sbjct: 305 GASGVPGALSNQPPQPASAPIVAANGASSVATTPISDHKDSTTNYELDKTVRHVDQPMGG 364

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + RLS+AVVVN  R+ +  G    Q      L +I ++V  A G ++ RGD++ + +  F
Sbjct: 365 IHRLSVAVVVNYLRVVDAKGHVTMQPVSADKLMQITQLVKDAMGFDASRGDSVNVVNSAF 424

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +   N+        D+L+ +        +  V   L   +   ALRR           
Sbjct: 425 TTDLDPNADLPWWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPPEPVPA 484

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           +             A             + +  +I + S  L      +  +++      
Sbjct: 485 LMSPDEPVLLDGIPAEER----------EGAIVEIETDSETLALENAKHKYERNLEFARS 534

Query: 534 MIEINEERFAKILRKWARSE 553
           +   + +  A +++ W   E
Sbjct: 535 IARQDPKIVATVVKNWVSDE 554


>gi|78067882|ref|YP_370651.1| flagellar MS-ring protein [Burkholderia sp. 383]
 gi|77968627|gb|ABB10007.1| Flagellar FliF M-ring protein [Burkholderia sp. 383]
          Length = 587

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/553 (22%), Positives = 222/553 (40%), Gaps = 29/553 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +     L     +   + +  A   +  +P Y  LY  L   D   I  AL +AN+
Sbjct: 51  GISRMKGNPKLPFLIAVAFAVAVITALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 110

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ +D G +I VPS+ V + R+ LAA GLP   S  G+EL D    FG++ F ++I   
Sbjct: 111 PYKFADAGGAILVPSNQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQ 168

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190
           RALEGE+ RTI+SI+ +  ARVH+ +P    F +    P+ASV +             +A
Sbjct: 169 RALEGELQRTIESINAVRGARVHLAIPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQA 228

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           I  +V++ VP++   +VT++D  G LLT       +    L  VQ ++H  +  I+  LA
Sbjct: 229 ITRMVSSGVPDMPAKNVTIVDQDGNLLTQTASASGLDASQLKYVQQVEHNTQKRIDAILA 288

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307
              G  N RS V A+L+    +     Y P+   ++S   S+    +             
Sbjct: 289 PIFGTGNARSQVSADLDFSKIEQTSESYGPNGNPQQSAIRSQQTSSATELAQGGASGVPG 348

Query: 308 VEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              N P                P++   +D+K++ +NYE++            ++RLS+A
Sbjct: 349 ALSNTPPQPASAPIVAGNGQNAPQTTPVSDRKDQTTNYEVDKTIRHLEQPMGSVKRLSVA 408

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN   + +  G    Q    + LA++ ++V  A G + +RGD++ + +  F       
Sbjct: 409 VVVNYQPVADAKGHVTMQPLPPAKLAQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPY 468

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +        D+++          +      L       A+RR     +     +      
Sbjct: 469 ADLPWWRQPDMIAMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEPVAPALAAPEDS 528

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                         P+  +    S ++                 +++      +   + +
Sbjct: 529 VALDGLPGPEKSEEPDALLLGFESEKNR---------------YERNLDYARTIARQDPK 573

Query: 541 RFAKILRKWARSE 553
             A +++ W   E
Sbjct: 574 IVATVVKNWVSDE 586


>gi|91785611|ref|YP_560817.1| flagellar MS-ring protein [Burkholderia xenovorans LB400]
 gi|91689565|gb|ABE32765.1| Flagellar FliF M-ring protein [Burkholderia xenovorans LB400]
          Length = 600

 Score =  406 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/557 (24%), Positives = 237/557 (42%), Gaps = 22/557 (3%)

Query: 12  KSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  + L + R      L   + + + +      +  +P Y  LY  L   D   I  AL 
Sbjct: 50  QRLSGLAQMRGNPRAPLIFAVALLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITALQ 109

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI ++ SD G +I VP+  V + R+ LA+QGLP S S  G+EL D    FG++ F ++
Sbjct: 110 AANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQ 167

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186
           I   RALEGE+ RT++SIS + +ARVH+ +P    F +    P+ASV++           
Sbjct: 168 INYQRALEGELERTVESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEG 227

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AI H+V++AVP++ +  VT+LD  G LLT       +    L   Q I+   +  I+
Sbjct: 228 QVLAITHMVSSAVPDMPVKGVTILDQDGNLLTQPSTGSGLDASQLKYRQQIERSTQQRID 287

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303
             LA   G  N  S V A+++    +     Y P+   +++   S+ +  +         
Sbjct: 288 AILAPLFGSGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSSATEMSQGGAS 347

Query: 304 SAVTVEQNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P         +        +   +D+K+  +NYE++            ++R
Sbjct: 348 GVPGALSNQPPQPASAPINAPTGASGVTTTPVSDRKDSTTNYELDKTVRHLERPMGGIKR 407

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AVVVN  R+ +  G +  Q      LA++N++V  A G ++ RGD++ + +  F  +
Sbjct: 408 LSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDAARGDSVNVVNSPFTTD 467

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              N+        D+++          +  V   L   +   ALRR          E   
Sbjct: 468 LDPNADLPWWRTPDMIALARQVATYLGIGAVALFLYFVMVKPALRRAF-----PPPEPVV 522

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
              L  P     +          A  SS  ++ S S  L    + +  +++     ++  
Sbjct: 523 AGALPSPDEPILLDGIPAAERAGAGGSSVAELESDSELLALENSKHKYERNLEFARNIAR 582

Query: 537 INEERFAKILRKWARSE 553
            + +  A +++ W   E
Sbjct: 583 QDPKIVATVVKNWVSDE 599


>gi|323527692|ref|YP_004229845.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001]
 gi|323384694|gb|ADX56785.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1001]
          Length = 600

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 132/558 (23%), Positives = 234/558 (41%), Gaps = 25/558 (4%)

Query: 12  KSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  + L + R      L   + V + +      +  +P Y  LY  L   D   I  AL 
Sbjct: 51  QRLSGLAQMRGNPRAPLIFAVAVLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITALQ 110

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +ANI ++ SD G +I VP+  V + R+ LA+QGLP S S  G+EL D    FG++ F ++
Sbjct: 111 QANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFAEQ 168

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186
           I   RALEGE+ RTI+SIS + +ARVH+ +P    F +    P+ASV++           
Sbjct: 169 INYQRALEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLFPGRALDEG 228

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AI H+V++AVP + +  VT+LD  G LLT       +    L   Q I+   +  I+
Sbjct: 229 QVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSTGGGLDASQLKYRQQIERNTQQRID 288

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303
             LA   G  N  S V A+++    +     Y P+   +++   S+ +  +         
Sbjct: 289 AILAPLFGAGNAHSQVSADIDFSRSEQTSENYGPNGNPQQAAIRSQQSSTATEMSQGGAS 348

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINTKSIATTHDNYKLE 355
                  N P           +  ++         +K+  +NYE++            + 
Sbjct: 349 GVPGALSNQPPQPASAPINAPNGASSSVTTTPVSDRKDMTTNYELDKTVRHLEQPMGGIR 408

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS+AVVVN  R+ +  G +  Q      LA++N++V  A G +++RGD++ + +  F  
Sbjct: 409 RLSVAVVVNYLRVVDGKGHATMQPVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTA 468

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
               N+          +   +  +   L      L + F+ +    R             
Sbjct: 469 ELDPNADLP-WWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPVVAAA 527

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             S   P  +          N N+ +D+S+ ++ +           +  +++     ++ 
Sbjct: 528 LPSPDEPILLDGIPAAERAGNGNVEIDNSDSELLALENAK------HKYERNLEFARNIA 581

Query: 536 EINEERFAKILRKWARSE 553
             + +  A +++ W   E
Sbjct: 582 RQDPKIVATVVKNWVTDE 599


>gi|296157432|ref|ZP_06840267.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1]
 gi|295892204|gb|EFG71987.1| flagellar M-ring protein FliF [Burkholderia sp. Ch1-1]
          Length = 600

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/560 (23%), Positives = 234/560 (41%), Gaps = 22/560 (3%)

Query: 9   QFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            F +  + L + R      L   + + + + +    +  +P Y  LY  L   D   I  
Sbjct: 47  NFGQRLSGLAQMRGNPRAPLIFAVALLVAVVVGLFLWSRAPDYKVLYSNLSDRDGGAIIT 106

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL  ANI ++ SD G +I VP+  V + R+ LA+QGLP S S  G+EL D    FG++ F
Sbjct: 107 ALQAANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQF 164

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            ++I   RALEGE+ RT++SIS + +ARVH+ +P    F +    P+ASV++        
Sbjct: 165 AEQINYQRALEGELERTVESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRAL 224

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
                 AI H+V++AVP++ +  VT+LD  G LLT       +    L   Q I+   + 
Sbjct: 225 DEGQVLAITHMVSSAVPDMPVKGVTILDQDGNLLTQPSTGNGLDASQLKYRQQIERSTQQ 284

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TS 300
            I+  LA   G  N  S V A+++    +     Y P+   +++   S+ +  +      
Sbjct: 285 RIDAILAPLFGSGNAHSQVSADIDFSHSEQTSENYGPNGNPQQAAIRSQQSSSATEMSQG 344

Query: 301 QPESAVTVEQNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                     N P         +        +   +D+K+  +NYE++            
Sbjct: 345 AASGVPGALSNQPPQPASAPINAPTGASGVTTTPVSDRKDSTTNYELDKTVRHLERPMGG 404

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN  R+ +  G +  Q      LA++N++V  A G +  RGD++ + +  F
Sbjct: 405 IKRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDQARGDSVNVVNSAF 464

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +   N+          +      +   L      L + F+ +    R           
Sbjct: 465 STDLDPNADLP-WWRTPDMIALAKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPPVA 523

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               S   P      +          A  SS  ++ S S  L    + +  +++     +
Sbjct: 524 GALPSPDEPIL----LDGIPAAERVGAGGSSVAELESDSELLALENSKHKYERNLEFARN 579

Query: 534 MIEINEERFAKILRKWARSE 553
           +   + +  A +++ W   E
Sbjct: 580 IARQDPKIVATVVKNWVSDE 599


>gi|187925740|ref|YP_001897382.1| flagellar MS-ring protein [Burkholderia phytofirmans PsJN]
 gi|187716934|gb|ACD18158.1| flagellar M-ring protein FliF [Burkholderia phytofirmans PsJN]
          Length = 603

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 134/559 (23%), Positives = 231/559 (41%), Gaps = 20/559 (3%)

Query: 10  FFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           F +  + L + R      L   + + + +      +  +P Y  LY  L   D   I  A
Sbjct: 49  FGQRLSGLAQMRGNPRAPLIFAVALLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITA 108

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  ANI ++ SD G +I VP+  V + R+ LA+QGLP S S  G+EL D    FG++ F 
Sbjct: 109 LQAANIPYKFSDAGGAILVPAEQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGISQFA 166

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           ++I   RALEGE+ RTI+SIS + +ARVH+ +P    F +    P+ASV++         
Sbjct: 167 EQINYQRALEGELERTIESISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALD 226

Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
                AI H+V++AVP++ +  VT+LD  G LLT       +    L   Q I+   +  
Sbjct: 227 EGQVLAITHMVSSAVPDMPVKGVTILDQDGNLLTQLSTGSGLDASQLKYRQQIERSTQQR 286

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQ 301
           I+  LA   G  N  S V A+++    +     Y P+   +++   S+ +  +       
Sbjct: 287 IDAILAPLFGSGNAHSQVSADIDFSHSEQTSENYGPNGNPQQAAIRSQQSSSATEMSQGA 346

Query: 302 PESAVTVEQNMPH-------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                    N P         +        +   +D+K+  +NYE++            +
Sbjct: 347 ASGVPGALSNQPPQPASAPINAPNGASGVTTTPVSDRKDSTTNYELDKTVRHLERPMGGI 406

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS+AVVVN  R+ +  G +  Q      LA++N++V  A G +  RGD++ + +  F 
Sbjct: 407 KRLSVAVVVNYLRVVDAKGHATMQPVTADKLAQVNQLVKDAMGFDQARGDSVNVVNSPFS 466

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                N+        D+++          +  V   L   +   ALRR     +      
Sbjct: 467 TEVDPNADLPWWRTPDMIALAKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPAAVAA 526

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                             +  N   +   S  ++   S  L      +  +++      +
Sbjct: 527 LASPDEPILLDGIPAAERMGANGTSS---SVAELEGDSELLALESAKHKYERNLEFARSI 583

Query: 535 IEINEERFAKILRKWARSE 553
              + +  A +++ W   E
Sbjct: 584 ARQDPKIVATVVKNWVSDE 602


>gi|302878299|ref|YP_003846863.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2]
 gi|302581088|gb|ADL55099.1| flagellar M-ring protein FliF [Gallionella capsiferriformans ES-2]
          Length = 566

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 124/561 (22%), Positives = 226/561 (40%), Gaps = 26/561 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F     L   + + L   I   I L + A  +  +P Y  LY  L   D   I  +L + 
Sbjct: 15  FSRFEQLSAQQKMGLGVGIAALIALIVGAWMWGQTPDYRILYSNLSDRDGGAIIESLQQL 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI ++ +D G ++ +P+  V +AR+ LA+QGLP      G+EL  +   FG+T F +++ 
Sbjct: 75  NIPYKFADGGGALMIPADQVHEARLKLASQGLPK-GGTVGFELM-ENQKFGITQFAEQVN 132

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188
             RALEGE+AR++QSI  + +ARVH+ +P    F K   +P+ASV++             
Sbjct: 133 YQRALEGELARSVQSIGAVASARVHLAIPKPSVFIKEQQKPSASVVLTLHGGRLLDSAQV 192

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEMNIN 246
            AI HL++++VP++   +VT++D  G LL++ +      +    L  VQ I+      I 
Sbjct: 193 TAIVHLISSSVPDMSAKNVTIVDQDGSLLSSLQDSNGLGLDANQLKYVQQIEQNYIKRIE 252

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSETSQPE 303
             L   LG +N  + V A ++    +     Y P+     S   S               
Sbjct: 253 DILTPLLGANNVHAQVTANIDFARTEQTAETYKPNQNPADSSVRSLQNSETLNGSGLNAS 312

Query: 304 SAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                  N P V               P      +   KE   NYE++     T      
Sbjct: 313 GVPGALSNQPPVPATAPIVSAPPGATDPANAPKIDNLHKENTINYEVDRTISHTILPVGM 372

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN  + T+  G+ + +   D+  A+I+ +V  A G +  RGD++ I +  F
Sbjct: 373 IKRLSVAVVVNNRKATDPKGKVSSKPLTDAEKAQIDNLVKDAVGFDKNRGDSLNIQNAAF 432

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + +   S           +           +L+   ++  +    ++      +    E
Sbjct: 433 NDEKEALSELP----WWKQADIIELAKLLAKYLIIAAVMLIVVFKIIKPAFRPLEPFHAE 488

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
              +  ++    +     G      IA  ++     +   +          +++      
Sbjct: 489 TDDEEHVATVDHTPGEGEGEGE---IATGAAGTQHANEPGSEHYTPPVEPYEKNLNIARQ 545

Query: 534 MIEINEERFAKILRKWARSEI 554
           + + + +  A +++ W     
Sbjct: 546 ITQQDPKIVASVIKDWVNGNE 566


>gi|307731342|ref|YP_003908566.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003]
 gi|307585877|gb|ADN59275.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1003]
          Length = 600

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/558 (23%), Positives = 234/558 (41%), Gaps = 25/558 (4%)

Query: 12  KSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  + L + R      L   + V + +      +  +P Y  LY  L   D   I  AL 
Sbjct: 51  QRLSGLAQMRGNPRAPLIFAVAVLVAVVAGLFLWSRAPDYKVLYSNLSDRDGGAIITALQ 110

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +ANI ++ SD G +I VP+  V + R+ LA+ GLP S S  G+EL D    FG++ F ++
Sbjct: 111 QANIPYKFSDAGGAILVPAEQVHEMRLRLASLGLPKSGS-VGFELMDN-QKFGISQFAEQ 168

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186
           I   RALEGE+ RTIQSIS + +ARVH+ +P    F +    P+ASV++           
Sbjct: 169 INYQRALEGELERTIQSISSVKSARVHLAIPKPSVFVRDKEAPSASVLVNLYPGRALDEG 228

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AI H+V++AVP + +  VT+LD  G LLT   +   +    L   Q I+   +  I+
Sbjct: 229 QVLAITHMVSSAVPEMPVKGVTILDQDGNLLTQPSVGGGLDASQLKYRQQIERNTQQRID 288

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPE 303
             LA   G  N  S V A+++    +     Y P+   +++   S+ +  +         
Sbjct: 289 AILAPLFGAGNAHSQVSADIDFSRSEQTSEAYGPNGNPQQAAIRSQQSSTATEMSQGGAS 348

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTD--------KKEEQSNYEINTKSIATTHDNYKLE 355
                  N P           +  ++         +K+  +NYE++            ++
Sbjct: 349 GVPGALSNQPPQPASAPINAPNGASSSVTTTPVSDRKDMTTNYELDKTVRHLEQPMGGIK 408

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS+AVVVN  R+ +  GR+  Q      LA++N++V  A G +++RGD++ + +  F  
Sbjct: 409 RLSVAVVVNYLRVVDGKGRATMQPVSADKLAQVNQLVKDAMGFDAQRGDSVNVVNSPFTA 468

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
               N+          +   +  +   L      L + F+ +    R             
Sbjct: 469 ELDPNADLP-WWRTPDMLALYKQIATYLGIGAVALFLYFVMVKPALRRAFPPPEPVVAAA 527

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             S   P  +          N ++ +D+ + ++ +           +  +++      + 
Sbjct: 528 LPSPDEPILLDGIPAAERAANASVEIDTGDAELLALENAK------HKYERNLEFARSIA 581

Query: 536 EINEERFAKILRKWARSE 553
             + +  A +++ W   E
Sbjct: 582 RQDPKIVATVVKNWVTDE 599


>gi|254239470|ref|ZP_04932792.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 2192]
 gi|126192848|gb|EAZ56911.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 2192]
          Length = 598

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 119/585 (20%), Positives = 243/585 (41%), Gaps = 51/585 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + SN G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDSNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++          
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + + +++ +  P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  + G ++ RGD++++ +  F   Q     ++           F  ++  ++ ++  
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L++ F  L  +          K   GG        +  +   G + +D +++   +  + 
Sbjct: 502 LVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILL 561

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                      +         + +++  +  R A+++++W  ++ 
Sbjct: 562 PSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 598


>gi|218892935|ref|YP_002441804.1| flagellar MS-ring protein [Pseudomonas aeruginosa LESB58]
 gi|218773163|emb|CAW28975.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa LESB58]
          Length = 598

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/585 (20%), Positives = 243/585 (41%), Gaps = 51/585 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++          
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + + +++ +  P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  + G ++ RGD++++ +  F   Q     ++           F  ++  ++ ++  
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPVQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L++ F  L  +          K   GG        +  +   G + +D +++   +  + 
Sbjct: 502 LVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILL 561

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                      +         + +++  +  R A+++++W  ++ 
Sbjct: 562 PSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 598


>gi|15596298|ref|NP_249792.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAO1]
 gi|107100552|ref|ZP_01364470.1| hypothetical protein PaerPA_01001577 [Pseudomonas aeruginosa PACS2]
 gi|116049030|ref|YP_792168.1| flagellar MS-ring protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390533|ref|ZP_06880008.1| flagellar MS-ring protein [Pseudomonas aeruginosa PAb1]
 gi|12230924|sp|Q51463|FLIF_PSEAE RecName: Full=Flagellar M-ring protein
 gi|9947018|gb|AAG04490.1|AE004540_10 Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa PAO1]
 gi|115584251|gb|ABJ10266.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 598

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/585 (20%), Positives = 243/585 (41%), Gaps = 51/585 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++          
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + + +++ +  P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  + G ++ RGD++++ +  F   Q     ++           F  ++  ++ ++  
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L++ F  L  +          K   GG        +  +   G + +D +++   +  + 
Sbjct: 502 LVLVFGVLRPVLSNITGGGKGKSLAGGGGRDGDLALGESGLEGSLADDRVSIGGPSSILL 561

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                      +         + +++  +  R A+++++W  ++ 
Sbjct: 562 PSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 598


>gi|170700811|ref|ZP_02891802.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10]
 gi|170134298|gb|EDT02635.1| flagellar M-ring protein FliF [Burkholderia ambifaria IOP40-10]
          Length = 587

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/528 (22%), Positives = 214/528 (40%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVEGNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    +                N P                 +S
Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A+I ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A      P+  +    + 
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDPLLLGFENE 553

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           ++                 +++      +   + +  A +++ W   E
Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|238028887|ref|YP_002913118.1| flagellar MS-ring protein [Burkholderia glumae BGR1]
 gi|237878081|gb|ACR30414.1| Flagellar M-ring protein FliF [Burkholderia glumae BGR1]
          Length = 599

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/524 (23%), Positives = 214/524 (40%), Gaps = 21/524 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +ANI ++ +D G +I VP+S V + R+ LAA G
Sbjct: 84  WSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMG 143

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI SI+ + +ARVH+ +P  
Sbjct: 144 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKP 201

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +              AI  +VA+ VP++   +VT++D  G LL+ 
Sbjct: 202 SVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 261

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ ++H  +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 262 QPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESYA 321

Query: 280 PDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV-------PLPRSLENT 329
           P+   +++   S+    S     S          N P                      +
Sbjct: 322 PNGTQQQAAIRSQQTSSSVESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPIS 381

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
           D+K+  +NYE++     T      ++RLS+AVVVN   + +  G    Q      L ++ 
Sbjct: 382 DRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADKLKQVE 441

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  A G +++RGD++ + +  F       +          +          L      
Sbjct: 442 QLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLP-WWRQPDMIALAKDAAKWLGIAAAA 500

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
             + F+ +    R               +     P   A+     P+  +A DS    + 
Sbjct: 501 AALYFMFVRPAMRRAFPPPEAAVANPALAAALGSPDEPALDGLPAPDSVVAEDSPEAALL 560

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +   +       +  +++      +   + +  A +++ W   E
Sbjct: 561 AFEADK------HRYERNLDYAKMIARQDPKIVAAVVKNWVSDE 598


>gi|75674797|ref|YP_317218.1| flagellar MS-ring protein [Nitrobacter winogradskyi Nb-255]
 gi|74419667|gb|ABA03866.1| flagellar FliF M-ring protein [Nitrobacter winogradskyi Nb-255]
          Length = 541

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/549 (25%), Positives = 244/549 (44%), Gaps = 13/549 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG +R++ + +V  V I  F      V +P    L+  L V D + I   
Sbjct: 1   MQGLLAFLKGLGASRLMAMVAVTAVLIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I R+RALEGE+ARTI++I  +  ARVH+V+P+   F +   +P+AS+++R       +
Sbjct: 120 QNINRLRALEGELARTIRAIDRVQDARVHLVLPERPLFTREAPQPSASIVLRVRGGLEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AIRHLVA+AV  L    V+++D TG+LL                  A +  +   + 
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGVSGDERRAAFEKRMRSQVE 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             +++ +G    R  + A+ + +        +DP+ +V RS +  ++   S T+     V
Sbjct: 240 AIVSSVVGNGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SSLTADNNGQV 297

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV   +P       P   + + + K EE +NYEI+  +     +  ++ R+S+AV+V+  
Sbjct: 298 TVNNELPGNQPSDNPN-TARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGA 356

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G+   + +    L  I  +V +A G + +RGD + + ++ F E  +        
Sbjct: 357 YARNDKGQMVYEERSQEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPVVVPLAEPT 416

Query: 427 SFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            ++ ++         V    V  +  L+VTF+ +  L +     +         + L  P
Sbjct: 417 GWLGMMTLTKDDVMYVFELGVMALLGLVVTFMVIRPLVQRILAAEPATPSAQPAAALPVP 476

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             +SA  T    N             +      +++   V  QS  R+  + E N    A
Sbjct: 477 ADASAQPTETGQNL------IPGSNATAQLIDVAQVQGQVHAQSVHRVGELAERNPAETA 530

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 531 SIIRQWLAE 539


>gi|172062015|ref|YP_001809667.1| flagellar MS-ring protein [Burkholderia ambifaria MC40-6]
 gi|171994532|gb|ACB65451.1| flagellar M-ring protein FliF [Burkholderia ambifaria MC40-6]
          Length = 587

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 120/528 (22%), Positives = 215/528 (40%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    +                N P                 +S
Sbjct: 314 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A      P+  +    + 
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDKADEPDPLLLGFENE 553

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           ++                 +++      +   + +  A +++ W   E
Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|107023995|ref|YP_622322.1| flagellar MS-ring protein [Burkholderia cenocepacia AU 1054]
 gi|116691082|ref|YP_836705.1| flagellar MS-ring protein [Burkholderia cenocepacia HI2424]
 gi|170734416|ref|YP_001766363.1| flagellar MS-ring protein [Burkholderia cenocepacia MC0-3]
 gi|105894184|gb|ABF77349.1| flagellar M-ring protein FliF [Burkholderia cenocepacia AU 1054]
 gi|116649171|gb|ABK09812.1| flagellar M-ring protein FliF [Burkholderia cenocepacia HI2424]
 gi|169817658|gb|ACA92241.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
          Length = 587

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/528 (23%), Positives = 217/528 (41%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS  V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    +                N P                P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G +++RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDAKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L   N
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLLGFEN 552

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +                  +++      +   + +  A +++ W   E
Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|254246925|ref|ZP_04940246.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia cenocepacia PC184]
 gi|124871701|gb|EAY63417.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia cenocepacia PC184]
          Length = 587

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/528 (23%), Positives = 216/528 (40%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS  V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSGQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    +                N P                P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTASDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L   N
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDTVALDGLPAPEKAAEEADPLLLGFEN 552

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +                  +++      +   + +  A +++ W   E
Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|115353160|ref|YP_774999.1| flagellar MS-ring protein [Burkholderia ambifaria AMMD]
 gi|115283148|gb|ABI88665.1| flagellar M-ring protein FliF [Burkholderia ambifaria AMMD]
          Length = 587

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 119/528 (22%), Positives = 214/528 (40%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    +                N P                 +S
Sbjct: 314 ESYSPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A      P+  +    + 
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPVAPALAAPDDPVALDGLPAPDRADEPDPLLLGFENE 553

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           ++                 +++      +   + +  A +++ W   E
Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|206558926|ref|YP_002229686.1| flagellar MS-ring protein [Burkholderia cenocepacia J2315]
 gi|198034963|emb|CAR50835.1| flagellar M-ring protein FliF [Burkholderia cenocepacia J2315]
          Length = 587

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/528 (23%), Positives = 217/528 (41%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    +                N P                P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNAPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L   N
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLLGFEN 552

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +                  +++      +   + +  A +++ W   E
Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|134297240|ref|YP_001120975.1| flagellar MS-ring protein [Burkholderia vietnamiensis G4]
 gi|134140397|gb|ABO56140.1| flagellar M-ring protein FliF [Burkholderia vietnamiensis G4]
          Length = 587

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/527 (22%), Positives = 210/527 (39%), Gaps = 29/527 (5%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LA
Sbjct: 77  LVLWSRTPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKLA 136

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +
Sbjct: 137 AMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAI 194

Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV I             +AI  +V++ VP++   +VT++D  G L
Sbjct: 195 PKPSVFVRDKEAPSASVFIDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNL 254

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           LT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +    
Sbjct: 255 LTQPASASGLDASQLKYVQQVERNTQKRIDSILAPIFGTGNARSQVSADIDFSKLEQTSE 314

Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSL 326
            Y P+   +++   S+    +                N P                P+S 
Sbjct: 315 SYGPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQSGPQST 374

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA
Sbjct: 375 PVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLA 434

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I ++V  A G + +RGD++ + +  F       +        D++           +  
Sbjct: 435 QIEQLVKDAMGYDEKRGDSVNVVNSAFSTANDPYADLPWWRQPDMIEMAKEAAKWLGIAA 494

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
               L       A+RR     +     +                          L +   
Sbjct: 495 AAAALYFMFVRPAMRRAFPPPEPPAPALAAPEGTVVLD---------------GLPAPEA 539

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                   L         +++      +   + +  A +++ W   E
Sbjct: 540 AAEPDPMLLGFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|288960029|ref|YP_003450369.1| flagellar M-ring protein [Azospirillum sp. B510]
 gi|288912337|dbj|BAI73825.1| flagellar M-ring protein [Azospirillum sp. B510]
          Length = 553

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/554 (28%), Positives = 272/554 (49%), Gaps = 9/554 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    ++  +LG  R+  +  V L+ I  F+     +++P  + LY +L+ ++   I+  
Sbjct: 1   MNNLLQTLRNLGPARLAAIGGVGLLLIGFFVYLTTRLSTPEMELLYAELQPTEAAAIAKK 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L EA + F +  +G+ I VP+  VG  R+ +AAQGLP S  + GYELFDK   FG TSFM
Sbjct: 61  LEEAKVPFSVDKSGTKIMVPADQVGPMRMRMAAQGLP-SGGSVGYELFDKGEGFGATSFM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184
           Q I  +RALEGE+ART+Q+++G+  ARVH+V+P    F +     TASV ++        
Sbjct: 120 QNINHLRALEGEMARTVQTLNGVQQARVHLVLPKRELFARQQNPATASVFLKLRPGAQLS 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEI 241
            ++ +AI+ L+AA+VPNLD   ++++D  GKLL   T ++    ++  +    QA +  +
Sbjct: 180 RENIQAIQQLIAASVPNLDPNRISIVDDKGKLLARGTGSDTAEAMMASAEEKKQAYEGRL 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG    R+ V A+L+ D    +  ++DPDS+V RS +   ++  S    
Sbjct: 240 ARTIEDLLGRTLGYGKVRAEVSADLDFDRITTQSEIFDPDSQVVRSTQTVNESNESSDRD 299

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P + VTV+QN+P         P S   +++ EE  NYEI   + +   ++ ++ RLS+AV
Sbjct: 300 PLAPVTVDQNLPTAQSSSSASPLSSNKSNRAEETINYEITKTTKSHVRESGQVRRLSVAV 359

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+           A Q + D  +  I  +V +A G+++ RGD++ + +M F   +    
Sbjct: 360 LVDGTYQLSKDAPPAYQPRSDQEIESIKALVRSAVGLDAVRGDSLEVINMRFWSPEDDIQ 419

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              ++ FM +       +   +V  +  +L+  L +  L          + E     +L+
Sbjct: 420 KPDEL-FMGMTKDDLFRIAEMVVLGIVAVLIILLVIRPLIARAFEKAEMQEEDEMDRLLT 478

Query: 482 PPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 A           ++AL+++  D         +R+   V   S  ++  +++ + 
Sbjct: 479 DQAGMPAALAAPTGALAQDLALEAAQADEELEQMIDINRVEGRVRASSLRKVGEIVDKHP 538

Query: 540 ERFAKILRKWARSE 553
           E    ILR W   E
Sbjct: 539 EEAVSILRNWLYQE 552


>gi|92116309|ref|YP_576038.1| flagellar MS-ring protein [Nitrobacter hamburgensis X14]
 gi|91799203|gb|ABE61578.1| flagellar M-ring protein FliF [Nitrobacter hamburgensis X14]
          Length = 540

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 141/549 (25%), Positives = 238/549 (43%), Gaps = 14/549 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG +R++ + +V    I  F      V +P    L+  L V D + I   
Sbjct: 1   MQGLLAFLKGLGPSRLMAMVAVTTALIGFFAFVIMRVTAPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I + + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPYELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I R+RALEGE++RTI++I  I  ARVH+V+PD   F +   +P+AS+++R       +
Sbjct: 120 QNINRLRALEGELSRTIKAIDRIQDARVHLVLPDRPLFSREAPQPSASIVLRVRGGLEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AIRHLVA+AV  L    V+++D TG+LL                  A +  +   + 
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSATDADGTTGDERRTAFEKRMRNQVE 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             +++ +G    R  + A+ + +        +DP+ +V RS +  ++   S T+     V
Sbjct: 240 AIVSSVVGSGRARVQLSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SSVTADNNGQV 297

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV   +P       P P + + + K EE +NYEI+  +     +  ++ R+S+AV+V+  
Sbjct: 298 TVNNELPGNQQSDNPSP-ARDQSKKSEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGT 356

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G+     +    L  I  +V +A G + +RGD + + ++ F E           
Sbjct: 357 YTKNDQGQMVYAERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLKFAEPPAAVPLAEPA 416

Query: 427 ---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                M +       VI+  V L+  L+VTF+ +  L R     +              P
Sbjct: 417 GLLGMMALTKDDVMYVIDLAVMLLLGLVVTFMVIRPLVRRILASEPAPAGAA-------P 469

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
               A             +       +      +++   V  QS  R+  + E N    A
Sbjct: 470 SQLPAPADATAQAGATGQNLVPGGSATAQLIDVAQVQGQVHAQSVHRVGELAERNPAETA 529

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 530 SIIRQWLAE 538


>gi|152984140|ref|YP_001349624.1| flagellar MS-ring protein [Pseudomonas aeruginosa PA7]
 gi|150959298|gb|ABR81323.1| flagellar M-ring protein FliF [Pseudomonas aeruginosa PA7]
          Length = 597

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 120/585 (20%), Positives = 244/585 (41%), Gaps = 52/585 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNIGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++          
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  + GK     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMAGKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +    +Y+PD    RS + + + +++ +  P+
Sbjct: 267 RVHNILQPVLGNGRYKAEVSADVDFSAVESTSEMYNPDQPALRSEQRNNEERQNSS-GPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPATAPQQATAGAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  + G ++ RGD++++ +  F   Q     ++           F  ++  ++ ++  
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L++ F  L  +    +     K    G          S +   L  +       S+  + 
Sbjct: 502 LVLVFGVLRPVLSNISGGGKGKALADGGRDGDLALGDSGLEGSLADDRVSIGGPSSILLP 561

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           S +    +++N          + +++  +  R A+++++W  ++ 
Sbjct: 562 SPTEGYDAQLN---------AIKNLVAQDPGRVAQVVKEWINADE 597


>gi|254251157|ref|ZP_04944475.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
 gi|124893766|gb|EAY67646.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
          Length = 588

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/528 (24%), Positives = 218/528 (41%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPSS V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSSQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    S     S          N P                P++
Sbjct: 314 ESYAPNGTPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGQNGPQT 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A+I ++V  A G + +RGD++ + +  F       +        DI++          + 
Sbjct: 434 AQIEQLVKDAMGYDQKRGDSVNVVNSAFSTATDPYADLPWWRQPDIIAIAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +     +       A  +     D + L   N
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDVVALDGLPAPASADDEPDTLLLGFEN 553

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +                  +++      +   + +  A +++ W   E
Sbjct: 554 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 587


>gi|295678025|ref|YP_003606549.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002]
 gi|295437868|gb|ADG17038.1| flagellar M-ring protein FliF [Burkholderia sp. CCGE1002]
          Length = 598

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/526 (24%), Positives = 223/526 (42%), Gaps = 24/526 (4%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  L   D   I  AL +ANI +++S++G+++ VP+  V + R+ LA+
Sbjct: 84  FLWSRAPSYKVLYSNLSDRDGGSIITALQQANIPYKLSESGTAVLVPAEQVHETRLRLAS 143

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP S S  G+EL D    FG++ F +++   RALEGE+ RTI SIS + +ARVH+ +P
Sbjct: 144 QGLPKSGS-VGFELMDN-QKFGISQFDEQVNYQRALEGELERTIGSISSVKSARVHLAIP 201

Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    P+ASV++              AI H+VA+AVP + +  VT+LD  G LL
Sbjct: 202 KPSVFVRDKEPPSASVLVNLYPGRVLDEGQVVAITHMVASAVPQMPVRGVTILDQDGNLL 261

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T       +    L   Q I+   +  I+  LA   G  N RS V A+++    +     
Sbjct: 262 TQPTNGSGLDATQLKFRQQIERNTQQRIDTILAPLFGAGNARSQVSADIDFSHSEQTSEK 321

Query: 278 YDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKVPLPRSLEN------ 328
           Y P++  + +   S+    +                N P        +  +  +      
Sbjct: 322 YGPNANPQDAAIRSQQTSSATEMSQGGASGVPGALSNQPPQPASAPIVAGNGASSVSTTP 381

Query: 329 -TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
            +D K+  +NYE++            + RL++AVVVN  R+ +  G    Q      LA+
Sbjct: 382 ISDHKDSTTNYELDKTVRHIDQPMGGIRRLTVAVVVNYMRVVDPKGHVTMQPVSADKLAQ 441

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I ++V  A G ++ RGD++ + +  F  +   N+        D+L+ +        +  V
Sbjct: 442 ITQLVKDAMGYDASRGDSVNVVNSAFTTDLDPNADLPWWRTPDMLALYKQIATYLGIGAV 501

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
              L   +   ALRR           +             A             D +  +
Sbjct: 502 ALFLYFVMVKPALRRAFPPPPEPVPALMSPDEPVLLDGIPADER----------DGAVVE 551

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           I + S  L      +  +++     ++   + +  A +++ W   E
Sbjct: 552 IEADSEKLALENAKHKYERNLEFARNIARQDPKIVATVVKNWVSDE 597


>gi|89094455|ref|ZP_01167395.1| flagellar M-ring protein [Oceanospirillum sp. MED92]
 gi|89081347|gb|EAR60579.1| flagellar M-ring protein [Oceanospirillum sp. MED92]
          Length = 554

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 235/555 (42%), Gaps = 28/555 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
               L   R + L   +   + +  A   +   P    L+  L  SD N+I   L   N+
Sbjct: 15  GFNKLSIVRQIGLMVGLAASVAIGFAVVLWSQKPEQRVLFSNLTFSDANQIIEQLRLYNV 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +    +G +I VP   V +AR+ LAA+G  +S    G+E+ D+  S G + FM+     
Sbjct: 75  PYTFDADGRAILVPDEHVHQARLKLAAEGF-TSDKTVGFEILDREQSLGTSQFMETTKYR 133

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190
           R LEGE+ARTI S++ +  ARVH+ +P    F +   +PTASV +              +
Sbjct: 134 RGLEGELARTISSMTSVRNARVHLAIPKDTVFIRDTRKPTASVFLELFSGRKLERDQVAS 193

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKA 248
           I +LVA+++P LD+ DVTV+D  G+LL   + + +  +  K L   ++I+  +   +N  
Sbjct: 194 IANLVASSIPALDVKDVTVVDQRGRLLNMRDKDVDVVLAAKQLEYTRSIEDTLLNRVNSI 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   +G+  FR+ V A+++  + +  + +Y+PD    RS +   +++      P      
Sbjct: 254 LQPVVGMGRFRAEVSADVDFTSVEQTDELYNPDLPALRSEQTMDESRVG-NGAPVGIPGA 312

Query: 309 EQNMPHVSDRKVPL--------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
             N P                       + +K+   N+E++     T H   ++ RL++A
Sbjct: 313 LSNQPPGQSSVPEQASGEGVIAGNGQPGSSRKQATRNFELDRTISYTKHQQGRVRRLTVA 372

Query: 361 VVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VVV+    +    G ++      + L  +  +V  A G ++ RGD++ + +  F   +  
Sbjct: 373 VVVDDLASVNAETGETSRTPWDQNELERLRILVQDAVGFSTLRGDSVNVVNTPFAAEEPI 432

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +  + +   +        V+  ++  +  L++ F  L  + R            G  + 
Sbjct: 433 VTEEIPLWKQE----WVMDVMKQVMAAIFVLVLVFGILRPILRNLAAAGTAGNVAGLGAA 488

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                    +  G    D++   S +  + + + +   ++N          +  M+  + 
Sbjct: 489 GEVSAELEGLEGGDFSADSVTFGSDDGLLPTPNESFDYQLN---------AIRSMVAEDP 539

Query: 540 ERFAKILRKWARSEI 554
            R A+ +++W   + 
Sbjct: 540 ARVAQAVKQWVGDDE 554


>gi|209964124|ref|YP_002297039.1| flagellar MS-ring protein [Rhodospirillum centenum SW]
 gi|209957590|gb|ACI98226.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
          Length = 556

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/550 (27%), Positives = 252/550 (45%), Gaps = 7/550 (1%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++  +LG  R+  +    LV + LF+      +SP    LY  L  +D   I   L 
Sbjct: 8   SFLQTLRNLGAVRLAAIGGATLVIVGLFVYMMSQWSSPGMSLLYSDLTPADGGAIVQQLE 67

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  I ++ S +G+ I VPS  VG+ R+ +A QGLP S  N GYELF++    G TSFMQ 
Sbjct: 68  QQQIPYKASPDGTRIEVPSDQVGRVRMLMAQQGLP-SGGNVGYELFNQPEGLGTTSFMQN 126

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186
           I ++RALEGE++RT+Q++  + AAR+H+V+P    F +     TASV +R    +    +
Sbjct: 127 IQQLRALEGELSRTVQTLQPVQAARIHLVLPKRELFSRQNQTATASVFVRLRPGASLGKE 186

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243
              AI+ LVAAAVP L+   V ++D  G +L     ++ +  +L  +     A +  +  
Sbjct: 187 QVLAIQTLVAAAVPQLEPDMVAIVDDKGNVLARGMGSDSQEAMLATAEEKKLAYEQRLTQ 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L+  +G    R+ V AEL+ D       +YDPDS+V RS +   +    +     
Sbjct: 247 TVEDLLSRTVGFGRVRAQVSAELDFDRITTNSEIYDPDSQVVRSTQTVNEQSEDQNRDGI 306

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV  N+P           S   T + EE  NYEIN        +  ++ RLS+AV+V
Sbjct: 307 DPVTVANNLPTADATNTASGLSSSKTSRAEESINYEINRTVKVHERETGQIRRLSVAVLV 366

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G S  Q + ++ L ++ ++V +A G ++ RGDT+ + +M F       +G 
Sbjct: 367 DGTYAAAEDGTSTYQPRPEAELDQLRRLVESAIGFDAARGDTVEVVNMRF-ATPDDLAGL 425

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            + +   +       +   +V  +  +LV  L +  L         +  +          
Sbjct: 426 GEETIFGLPKEDVFRIAQTIVLAIVAILVILLVIKPLVARALDRTPQLEDEPDLLAGGDG 485

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
               A   G      +AL+++  +         +R++  V   S  ++  ++E + E   
Sbjct: 486 VPQLAGPGGGALARELALEAAQANEELEQMIDINRVDGRVRASSLRKVGEIVEKHPEEAV 545

Query: 544 KILRKWARSE 553
            I+R W   E
Sbjct: 546 SIIRNWLYQE 555


>gi|171321708|ref|ZP_02910625.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
 gi|171093009|gb|EDT38241.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
          Length = 587

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/528 (22%), Positives = 214/528 (40%), Gaps = 29/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 76  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 135

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 136 AALGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLA 193

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 194 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 253

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +   
Sbjct: 254 LLTQTASASGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSKLEQTS 313

Query: 276 IVYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRS 325
             Y P+   +++   S+    +                N P                 +S
Sbjct: 314 ESYAPNGTPQQAAIRSQQTSSATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGAQS 373

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q      L
Sbjct: 374 TPVSDRKDQTTNYELDKTIRHVEQPMGNVKRLSVAVVVNYQPVADAKGHVTMQPLPPPKL 433

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A+I ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 434 AQIEQLVKDAMGYDEKRGDSVNVVNSAFSSVGDPYADLPWWRQPDMIAMAKEAAKWLGIA 493

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A      P+  +    + 
Sbjct: 494 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPDDPVALDGLPAPERADEPDPLLLGFENE 553

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           ++                 +++      +   + +  A +++ W   E
Sbjct: 554 KNR---------------YERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|161526230|ref|YP_001581242.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616]
 gi|189349056|ref|YP_001944684.1| flagellar MS-ring protein [Burkholderia multivorans ATCC 17616]
 gi|160343659|gb|ABX16745.1| flagellar M-ring protein FliF [Burkholderia multivorans ATCC 17616]
 gi|189333078|dbj|BAG42148.1| flagellar M-ring protein [Burkholderia multivorans ATCC 17616]
          Length = 587

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/525 (23%), Positives = 216/525 (41%), Gaps = 29/525 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +             +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLEN 328
            P+   +++   S+    S     S          N P                P++   
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA+I
Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F      N+        D+++          +    
Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR     +     +                          L +   + 
Sbjct: 497 AALYFMFVRPAMRRAFPPPEPAAPALALPGEPVVLD---------------GLPAPEPED 541

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            S    L         +++      +   + +  A +++ W   E
Sbjct: 542 ESDPALLAFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|221215779|ref|ZP_03588738.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1]
 gi|221164315|gb|EED96802.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD1]
          Length = 587

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/525 (23%), Positives = 217/525 (41%), Gaps = 29/525 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +             +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLEN 328
            P+   +++   S+    S     S          N P                P++   
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA+I
Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F      N+        D+++          +    
Sbjct: 437 EQLVKDAMGYDAKRGDSVNVVNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR     +     +                          L +   + 
Sbjct: 497 AALYFMFVRPAMRRAFPPPEPPAPALALPGEPVVLD---------------GLPAPEPED 541

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            S +  L         +++      +   + +  A +++ W   E
Sbjct: 542 ESDTALLAFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|221201939|ref|ZP_03574976.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M]
 gi|221207554|ref|ZP_03580562.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2]
 gi|221172400|gb|EEE04839.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2]
 gi|221178359|gb|EEE10769.1| flagellar M-ring protein FliF [Burkholderia multivorans CGD2M]
          Length = 587

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/525 (23%), Positives = 217/525 (41%), Gaps = 29/525 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA 
Sbjct: 79  LWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPAAQVHETRLKLAAL 138

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P 
Sbjct: 139 GLPKGGA-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPK 196

Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +             +AI  +V++ VP++   +VT++D  G LLT
Sbjct: 197 PSVFVRDREAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGNLLT 256

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y
Sbjct: 257 QPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGAGNARSQVSADIDFSKLEQTSESY 316

Query: 279 DPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLEN 328
            P+   +++   S+    S     S          N P                P++   
Sbjct: 317 GPNGSPQQAAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPV 376

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K++ +NYE++            ++RLS+AVVVN   + +  G    Q    + LA+I
Sbjct: 377 SDRKDQTTNYELDKTIRHVEQPMGTVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKLAQI 436

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD++ + +  F      N+        D+++          +    
Sbjct: 437 EQLVKDAMGYDAKRGDSVNVMNSAFSTATDPNADLPWWRQPDMIALAKEAAKWLGIAAAA 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       A+RR     +     +                          L +   + 
Sbjct: 497 AALYFMFVRPAMRRAFPPPEPPAPALALPGEPVVLD---------------GLPAPEPEN 541

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            S +  L         +++      +   + +  A +++ W   E
Sbjct: 542 ESDTALLAFENEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|146282929|ref|YP_001173082.1| flagellar MS-ring protein [Pseudomonas stutzeri A1501]
 gi|145571134|gb|ABP80240.1| flagellar M-ring protein [Pseudomonas stutzeri A1501]
          Length = 585

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/585 (19%), Positives = 235/585 (40%), Gaps = 52/585 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  L   L   D N++   L
Sbjct: 15  LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 74

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V ++ + +AR+ LA  G+  + SN G+E+ DK    G + FM+
Sbjct: 75  AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 134

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
                R LEGE+ RTI S++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 135 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 194

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L+   +TV+D  G LL+  +   E ++ GK     + ++     
Sbjct: 195 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 254

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +     ++PD    RS +   + ++S +  P+
Sbjct: 255 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 313

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                  
Sbjct: 314 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 373

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            +++   NYE++     T   + +L RLS+AVVV+        G           LA   
Sbjct: 374 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 433

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  A G ++ RGD++++ +  F+ +    +              F  V+  ++ ++  
Sbjct: 434 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIP---FYSQPWFWDVVKQVLGVLFI 490

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L++ F  L  + +     +A  G+    + +           G + ND ++L      + 
Sbjct: 491 LVLVFGVLRPVLKSLTNPNA--GKELQVAGMPGELGEDEGLDGGLANDRVSLSGPQNILL 548

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                      S   +     + +++  +  R A+++++W  ++ 
Sbjct: 549 PSP--------SEGYEAQLNAIKNLVADDPGRVAQVVKEWINADE 585


>gi|284159411|ref|YP_440758.3| flagellar MS-ring protein [Burkholderia thailandensis E264]
 gi|83653465|gb|ABC37528.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264]
          Length = 677

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/525 (24%), Positives = 219/525 (41%), Gaps = 22/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 161 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 220

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 221 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 278

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 279 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 338

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 339 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 398

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 399 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 458

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 459 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 518

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 519 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 578

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR          E          P  +    GL   D   L   +++ 
Sbjct: 579 AALYFMFVRPALRR----AFPPPAEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEH 634

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       +      +++      +   + +  A +++ W   E
Sbjct: 635 PALLAFESEK---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 676


>gi|70729030|ref|YP_258764.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5]
 gi|68343329|gb|AAY90935.1| flagellar M-ring protein FliF [Pseudomonas fluorescens Pf-5]
          Length = 595

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 118/586 (20%), Positives = 230/586 (39%), Gaps = 54/586 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLSQMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+     N G+E+ DK    G + FM+
Sbjct: 85  ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVAPGDGNVGFEILDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L+   VTV+D  G LL+         + GK     + ++  +  
Sbjct: 205 GQVMAIVNLVATSVPELNKSQVTVVDQKGNLLSDQAENSALTMAGKQFDYSRRLEGMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS +   + QRS ++ P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSV-NEQRSSSNGPQ 323

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                + 
Sbjct: 324 GVPGALSNQPPAPASAPQTTGGATAAAGMVQPGQPLLDANGQQIMDPATGQPMLAPYPSD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS+AVVV+    +    G ++        LA  
Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVAVVVDDQVKVNPANGETSRAPWSADELARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ ++ F   +      +           F  ++  ++ ++ 
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSAERGEVIADIPF----YSQPWFWDIVKQVLGVLF 499

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +          K   G                G + ND ++L      +
Sbjct: 500 ILVLVFGVLRPVLNNITGGGKNKELAG--LGSDVELGGMGGLDGELGNDRVSLGGPQSIL 557

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       S         +  ++  +  R A+++++W  ++ 
Sbjct: 558 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 595


>gi|292492381|ref|YP_003527820.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4]
 gi|291580976|gb|ADE15433.1| flagellar M-ring protein FliF [Nitrosococcus halophilus Nc4]
          Length = 566

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 236/561 (42%), Gaps = 34/561 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L     +   L   + + L  +I V + L +    +  SP+Y  LY  +   +   I  A
Sbjct: 25  LAVLQANIARLSPLKQVGLLLMIAVSVALGVGIFLWSQSPNYQILYGAVSGKEKGEIVEA 84

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +ANID+++ +   ++ VP+S V + R+ LA +GLP S+   G+EL ++   FG++ F+
Sbjct: 85  LQKANIDYQLDEATGALMVPASQVHEVRLQLAMEGLPRSAGT-GFELLEQNPGFGVSEFL 143

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SV 184
           ++    R LEGE+ARTI +++ + +ARVH+ +P    F +    P+ASV++         
Sbjct: 144 EKARYQRVLEGELARTISTLNNVKSARVHLALPKRSVFIRDRKVPSASVVLDLYPGRMLA 203

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHEIE 242
                AI HLVA+++P L+   VTV++  G LLT  E  +   +        + I+ E  
Sbjct: 204 PGQVAAITHLVASSIPELESAGVTVVNQEGDLLTQPERSQTLEMTASQFEYTRRIEEEYG 263

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             I + LA  +G D  R+ VVAE++    +  +  Y+P+ +  RS + +++ +      P
Sbjct: 264 HRIQRILAPLVGADKVRAQVVAEVDFTVTEQTQERYEPEKRALRSEQTAEEERIG-GRLP 322

Query: 303 ESAVTVEQNMPHVSDRKVPL----------PRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                   N P    +              P    ++       NYE++           
Sbjct: 323 GGIPGALSNQPPDEAQVPETLNGANEGESQPSEPPSSRSLRATRNYELDRTISHIRLAPG 382

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RLS+AV+V++  +T+  G  +   +    L  I  +V  A G N  RGDTI + +  
Sbjct: 383 DIRRLSVAVLVDEKLVTDAEGNVSTSPRSPQELEHITGLVKEAVGFNPDRGDTINVINAP 442

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F+ N+          +       F   +     ++  L +    L    R          
Sbjct: 443 FVPNEELEPLPEPPFWQ---QEWFWVAVKQGGGILAVLFLLLGVLRPTFRRLT------- 492

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            V     +   P  S      +  D + L S+   +     +          + +  R+ 
Sbjct: 493 TVPEPVTVPSLPKGSDEDKEGLKEDRLTLSSNAPTLQLSGPDSL--------EANLERVR 544

Query: 533 HMIEINEERFAKILRKWARSE 553
            M   + ER A++++ W   +
Sbjct: 545 KMAADDSERVAQVVKNWVSGD 565


>gi|85713555|ref|ZP_01044545.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A]
 gi|85699459|gb|EAQ37326.1| flagellar M-ring protein [Nitrobacter sp. Nb-311A]
          Length = 541

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 140/549 (25%), Positives = 242/549 (44%), Gaps = 13/549 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG +R++ + +V  V I  F      V +P    L+  L V D + I   
Sbjct: 1   MQGLLAFLKGLGASRLMAMVAVTTVLIAFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + ++G+ I VP   V + R+ LA  GLP      GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFELRNDGAVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I R+RALEGE+ARTI++I  I  ARVH+V+P+   F +   +P+AS+++R       +
Sbjct: 120 QNINRLRALEGELARTIRAIDRIQDARVHLVLPERPLFTREAPQPSASIVVRVRGGLEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AIRHLVA+AV  L    V+++D TG+LL                  A +  +   + 
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDETGQLLADGSTTDADGVTGDERRTAFEKRMRSQVE 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             +++ +G    R  + A+ + +        +DP+ +V RS +  ++   S T+     V
Sbjct: 240 AIVSSVVGNGRARVQLSADFDYNKITQTSDTFDPEGRVLRSSQTREE--SSLTADNNGQV 297

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV   +P       P  ++ + + K EE +NYEI+  +     +  ++ R+S+AV+V+  
Sbjct: 298 TVNNELPGNQPSDNPN-QARDQSKKSEETNNYEISRTTKTEVSEAGRVNRISVAVLVDGT 356

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +  G+     +    L  I  +V +A G + +RGD + + ++ F E           
Sbjct: 357 YAKDDKGQMVYTERSKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFAEPPAIVPLAEPA 416

Query: 427 ---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                + +        +   V  +  L+V F+ +  L +     +     V   + L  P
Sbjct: 417 GLLGMIALTKDDVMYFVELAVMALLGLVVVFMVIRPLVQRILAAEPAAASVPPAAALPVP 476

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             ++A  T    N             +      +++   V  QS  R+  + E N    A
Sbjct: 477 ADANAQPTATGQNL------IPGSNATAQLIDVAQVQGQVHAQSVHRVGELAERNPTETA 530

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 531 SIIRQWLAE 539


>gi|327481269|gb|AEA84579.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166]
          Length = 594

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/585 (19%), Positives = 235/585 (40%), Gaps = 52/585 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  L   L   D N++   L
Sbjct: 24  LSFLENLSEMSMLRQIGLLVGLAASVAMGFAVVLWSQQPDYRPLLGSLAGMDANQVMETL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V ++ + +AR+ LA  G+  + SN G+E+ DK    G + FM+
Sbjct: 84  AAADIAYTVEPNSGALLVKANDLARARLKLAGAGIAPADSNIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
                R LEGE+ RTI S++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELGRTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L+   +TV+D  G LL+  +   E ++ GK     + ++     
Sbjct: 204 SQVMAIINLVATSVPELNKSQITVVDQKGNLLSDQQELTELSMAGKQFDYSRRMESLYTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++    +     ++PD    RS +   + ++S +  P+
Sbjct: 264 RVHNILQPVLGSGRYKAEVSADVDFSAVESTSETFNPDQPALRSEQSVNEQRQS-SLPPQ 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                  
Sbjct: 323 GVPGALSNQPPGPASAPEQANQAAAAAGAVAPGQPLVDANGQQIMDPVTGQPMLAPFPAD 382

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            +++   NYE++     T   + +L RLS+AVVV+        G           LA   
Sbjct: 383 KREQATRNYELDRSISYTKQQHGRLRRLSVAVVVDDQMSLNAAGEMVRVPWNADDLARFT 442

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  A G ++ RGD++++ +  F+ +    +              F  V+  ++ ++  
Sbjct: 443 RLVQDAVGFDASRGDSVSVINTAFVADSFGETFEEIP---FYSQPWFWDVVKQVLGVLFI 499

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L++ F  L  + +     +A  G+    + +           G + ND ++L      + 
Sbjct: 500 LVLVFGVLRPVLKSLTNPNA--GKELQVAGMPGELGEDEGLDGGLANDRVSLSGPQNILL 557

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                      S   +     + +++  +  R A+++++W  ++ 
Sbjct: 558 PSP--------SEGYEAQLNAIKNLVADDPGRVAQVVKEWINADE 594


>gi|76581502|gb|ABA50977.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710b]
          Length = 627

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 110 WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 169

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 170 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 227

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 228 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 287

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 288 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 347

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 348 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 407

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 408 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 467

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 468 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 527

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L   +++ 
Sbjct: 528 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 584

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       R      +++      +   + +  A +++ W   E
Sbjct: 585 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 626


>gi|167813742|ref|ZP_02445422.1| flagellar MS-ring protein [Burkholderia pseudomallei 91]
          Length = 559

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 135/563 (23%), Positives = 228/563 (40%), Gaps = 24/563 (4%)

Query: 7   LLQFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  F +    L R +    L       + I   +A   +  +P Y  LY  L   D   I
Sbjct: 4   LGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAI 63

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +AN+ ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++
Sbjct: 64  IAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGIS 121

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
            F +++   RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++      
Sbjct: 122 QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR 181

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
                   A+  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   
Sbjct: 182 VLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT 241

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298
           +  I+  LA   G  N RS V A+++    +     Y P+   ++S   S+    S    
Sbjct: 242 QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELA 301

Query: 299 TSQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            S          N P             +   P +   +D+K+  +NYE++         
Sbjct: 302 QSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS 361

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              ++RLS+AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +
Sbjct: 362 MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVN 421

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F       +        D++           V      L       ALRR        
Sbjct: 422 SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFPPP 478

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                        P       GL   D   L   +++  +       R      +++   
Sbjct: 479 AEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDY 535

Query: 531 LLHMIEINEERFAKILRKWARSE 553
              +   + +  A +++ W   E
Sbjct: 536 ARTIARQDPKIVATVVKNWVSDE 558


>gi|192359622|ref|YP_001982191.1| flagellar MS-ring protein [Cellvibrio japonicus Ueda107]
 gi|190685787|gb|ACE83465.1| flagellar M-ring protein FliF [Cellvibrio japonicus Ueda107]
          Length = 569

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/560 (22%), Positives = 239/560 (42%), Gaps = 25/560 (4%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F +  +SL   R + L   +   + +  A   ++    Y  LY +++  D   +   L 
Sbjct: 21  DFLEGFSSLNLLRQIGLIITLAASVAIGFAVVMWMQGDDYRPLYGRMDNLDAANVIDVLD 80

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  I F++  N  +I V +  V  AR+ LA  GLP SS  +G+EL DK    G + F++ 
Sbjct: 81  QHKIKFKMDTNTGAILVAADDVHMARLKLAEFGLP-SSPVAGFELMDKEQPLGTSQFVEN 139

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186
               R++EGE+ARTI SI+ I +ARVH+ MP    F +  A+PTASV +   A       
Sbjct: 140 TRYQRSIEGELARTITSITSIRSARVHLAMPKKTVFVRDAAKPTASVFVEVFAGRTVAPA 199

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244
             +AI +LVA++VP++ M +VTV+D  G LL+  E   ++    +     + ++  +   
Sbjct: 200 QVKAIMNLVASSVPDMKMENVTVVDQHGSLLSTGEESSDLLLATRQHQYAKEVETSVIQR 259

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           IN  L   +G   FR+ V A+++    +     ++PD    RS +   +++         
Sbjct: 260 INSILEPVVGDGKFRAQVNADIDFTAVEQAAETFNPDLPAIRSEQTLNESRTGSEL-AGG 318

Query: 305 AVTVEQNMPHVSDRKVPLP----------RSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                 N P  +  + P            +     ++++   NYE++     T H    L
Sbjct: 319 IPGALTNQPPGTAAQAPEQIDPATGQPIQQQPPKNNREQATRNYELDRTISYTKHQQGTL 378

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RL++AVVV+   +    G        D+ L  ++ +V  A G ++ RGD++ + +  F 
Sbjct: 379 KRLTVAVVVDDKVVRNAEGVETRVPWTDAELERLSILVRDAVGFSAVRGDSVNVLNSPFS 438

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                    V+ +      +     I  L  ++  L+V F  L  L +  +   +   + 
Sbjct: 439 GIDASVQTQVEDAMPW-WQQWIMANIKYLAGILVILIVVFGLLRPLFKSLSRTGSSIADE 497

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L+    + A     + ++ + L   +  +                ++    +  +
Sbjct: 498 EEARELAALEAAGAGKLDGISDETVTLTGGSAFMLPGPE--------QGYEEQINAIKGL 549

Query: 535 IEINEERFAKILRKWARSEI 554
           I  +  R A++++KW   + 
Sbjct: 550 IADDPGRVAQVVKKWINRDD 569


>gi|167843852|ref|ZP_02469360.1| flagellar MS-ring protein [Burkholderia pseudomallei B7210]
          Length = 565

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 135/563 (23%), Positives = 228/563 (40%), Gaps = 24/563 (4%)

Query: 7   LLQFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  F +    L R +    L       + I   +A   +  +P Y  LY  L   D   I
Sbjct: 10  LGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAI 69

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +AN+ ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++
Sbjct: 70  IAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGIS 127

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
            F +++   RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++      
Sbjct: 128 QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR 187

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
                   A+  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   
Sbjct: 188 VLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298
           +  I+  LA   G  N RS V A+++    +     Y P+   ++S   S+    S    
Sbjct: 248 QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELA 307

Query: 299 TSQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            S          N P             +   P +   +D+K+  +NYE++         
Sbjct: 308 QSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS 367

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              ++RLS+AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +
Sbjct: 368 MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVN 427

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F       +        D++           V      L       ALRR        
Sbjct: 428 SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR---AFPPP 484

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                        P       GL   D   L   +++  +       R      +++   
Sbjct: 485 AEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDY 541

Query: 531 LLHMIEINEERFAKILRKWARSE 553
              +   + +  A +++ W   E
Sbjct: 542 ARTIARQDPKIVATVVKNWVSDE 564


>gi|167568365|ref|ZP_02361239.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786]
          Length = 554

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/525 (23%), Positives = 216/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G
Sbjct: 37  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASMG 96

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ + +ARVH+ +P  
Sbjct: 97  LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 154

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 155 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 214

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 215 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 274

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   +++   S+    +     S          N P             +   P +   
Sbjct: 275 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 334

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q      LA+I
Sbjct: 335 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 394

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 395 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 454

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P  +    GL   D   L   + + 
Sbjct: 455 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPNDAIALDGLPSPDKKQLADEDDEH 511

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       +      +++      +   + +  A +++ W   E
Sbjct: 512 PALLAFESEK---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 553


>gi|224826633|ref|ZP_03699734.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
 gi|224601234|gb|EEG07416.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
          Length = 576

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/572 (22%), Positives = 232/572 (40%), Gaps = 33/572 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++ +      +L   + ++L + +     + +       +P Y  L+  L   D  +I+ 
Sbjct: 15  RVNEASDRFKALPNNKKILLFAALAAVFSVIVGLLILNRTPDYKVLFANLADRDGGQITA 74

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL + N+ ++I   G  ISVPS  V   R+ LAAQGLP +    G+EL D    FG++ F
Sbjct: 75  ALQQMNVPYQI-GGGGVISVPSDKVYDVRLKLAAQGLPKAGG-VGFELMDN-QKFGISQF 131

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RA+EGE+ARTI++I  + +ARVHI +P    F +   +PTASVM+      V 
Sbjct: 132 AEQVNYQRAIEGELARTIEAIGAVESARVHIAIPKQSVFVRDQQQPTASVMLNLYPGRVL 191

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHE 240
                  I HLV+++VPNL   +VTV+D  G LL++     N  G   + L  V  I+ +
Sbjct: 192 DGGQISGILHLVSSSVPNLSARNVTVVDQDGNLLSSQSDVNNAAGLDQRQLGYVHQIESD 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRS 297
               I   L    G  N R+ V A ++    +     + P+S    S   S+   +   S
Sbjct: 252 FVKRIEGILEPIFGKGNVRAQVTANVDFSEVEQTSETFRPNSTPNPSATRSQQIVEKLGS 311

Query: 298 ETSQPESAVTVEQNMPHVSDRKV---------------PLPRSLENTDKKEEQSNYEINT 342
            ++ P        N P  +                     P       +++  +NYE++ 
Sbjct: 312 GSNLPGGVPGALSNQPPSAASAPLTLPPGAAPGTATLSGQPLGQNGALERQLITNYEVDK 371

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T      L+RLS AVVVN   + +  G           + +IN +V    G N+ R
Sbjct: 372 TIQHTKLPKGVLKRLSAAVVVNYRLMPDRNGEVKPTPLTAQEIQQINNLVRETMGYNTER 431

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GDT+ + +  F  N    S   +   +D +S +   ++  ++  +  L + F  +  + R
Sbjct: 432 GDTLNVVNAAFAGNAPPASLQEK--VVDYVSSNATDLVKYVLLAIAVLYLLFGVVRPIVR 489

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                        G +      +   +             +  +            +   
Sbjct: 490 DVLKPAKGDKGQPGAAGEEAGGVPGRLLAVAREEGEAGAAAVEEANLDPRE-----LQRR 544

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +      +++ +    A+I+++W  S+ 
Sbjct: 545 QYMSNLEAARELVKADPRMAAQIIKEWISSDE 576


>gi|291278937|ref|YP_003495772.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1]
 gi|290753639|dbj|BAI80016.1| flagellar M-ring protein FliF [Deferribacter desulfuricans SSM1]
          Length = 556

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 248/561 (44%), Gaps = 18/561 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D + QF     SL   + + + +  +   +  +    + N P Y  LY  L   D 
Sbjct: 1   MALKDFINQFKAVFNSLSLIQKVSIVTATVAVFLTIIVLVIWANKPVYKTLYSNLSSDDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    I + + DNG +I VP   V + R++LA +GLP S   +G+ELFDK +SF
Sbjct: 61  AKIVEELKANKIPYELKDNGKTILVPEKNVYELRLNLAQKGLP-SGGGAGFELFDK-SSF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F Q +   RAL+GE+ARTI+S+  +  ARVH+ +P    F    + P A+V+++  
Sbjct: 119 GISEFAQNVNYQRALQGELARTIKSLDEVEDARVHLTLPKERIFVSEESSPKATVVLKFR 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN----ILGKSLSIV 234
                  ++ +AI  LVA AV  L + +V V+D+ G+LL+    +      +    L   
Sbjct: 179 NGANISRENIKAIASLVAGAVKGLTIDNVQVVDTKGRLLSEFLSKDYEPLLLTQTQLEYQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + I+  +E  IN  L+  LG DN  + V A+++   + + +  YDP+  V RS +  +  
Sbjct: 239 KHIEKNLESKINSILSRVLGPDNAVAKVTADIDFTKKVVSKEEYDPN-PVLRSQQTVEIE 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            ++  + P     V  N+   ++       S     K E   N+E+             +
Sbjct: 298 SKNTPNAPGGTPGVSSNLAEPNNI---NNGSNSEYSKAETTQNFEVGKTVTKEEKPIGVV 354

Query: 355 ERLSIAVVVNKGRLTEVLGRSA---DQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +++++AV++N  ++ +  G+ +           + +I K+V +A GI+  RGD I +T++
Sbjct: 355 KKITVAVLLNDKKVVKEEGKKSKIEYVKWTPEEIEKIKKLVESAAGIDVNRGDRIEVTNI 414

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F                        T+   ++ L+  +L  FL +  + +        +
Sbjct: 415 SFDTTHDLEVA--SFYNKQEKMSLIFTIAKYVLALLIVVLFYFLVVRPILKRLETVRETE 472

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL-QSRINSYVSKQSDLR 530
                 +  +    S  ++ G        ++   ++I +         +++  +K    +
Sbjct: 473 EGTFVAAGATGKGESVDISIGEEIKFPKTIEELEKEIENELEESAPVDVDTVKTKVMLKK 532

Query: 531 LLHMIEINEERFAKILRKWAR 551
           L      + E  A +++ W +
Sbjct: 533 LEEAANEDPETIANLIKVWIK 553


>gi|186477678|ref|YP_001859148.1| flagellar MS-ring protein [Burkholderia phymatum STM815]
 gi|184194137|gb|ACC72102.1| flagellar M-ring protein FliF [Burkholderia phymatum STM815]
          Length = 593

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 234/565 (41%), Gaps = 29/565 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +  +      S T +       L   + V I +      +  +P Y  LY  +   D   
Sbjct: 43  LASRFPGLPTSLTQMRGNPRAPLIFAVAVLIAVVAGLVLWSRAPDYKVLYSNVSDQDGGA 102

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I  AL +AN+ ++ S+ G +I +P+  V + R+ LA+QGLP S S  G+EL D    FG+
Sbjct: 103 IVAALQQANVPYKFSEAGGAILIPADQVHEMRLRLASQGLPKSGS-VGFELMDN-QKFGI 160

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           + F ++I   RALEGE+ RTI+SIS +  ARVH+ +P    F +    P+ASV++     
Sbjct: 161 SQFAEQINYQRALEGELQRTIESISTVKTARVHLAIPKPTVFVRDREAPSASVLVNLYPG 220

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQH 239
                    AI H+VA+AVP++ +  VT++D  G LLT        +    L   Q I+ 
Sbjct: 221 RMLDEGQVVAITHMVASAVPDMSVRGVTIVDQDGNLLTQAGANGAGLDATQLKYRQQIER 280

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE- 298
             +  I+  L    G  N  S+V A+++   Q++    Y P++  +++   S+    +  
Sbjct: 281 NTQQRIDAILGPMFGTGNAHSSVSADIDFSRQELTSEKYAPNNDPQQAAIRSQQTSTATE 340

Query: 299 --TSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348
              S          N P                   +   +D K+  +NYE++     T 
Sbjct: 341 MSQSGASGVPGALSNQPPQPASAPITASANGASGVTTTPISDHKDSTTNYELSKTVSHTE 400

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                ++RLS+AVVVN  R+ +  G +  Q      LA+++++V  A G +  RGDT+ +
Sbjct: 401 AAVGGIKRLSVAVVVNYMRVFDAKGHATMQPISADKLAQVDQLVKEAMGYDQARGDTVKV 460

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S  F +    ++        D+++ +        + LV   L   +   ALRR      
Sbjct: 461 ISSAFQQIADPDADLPWWRTKDMIAMYKQIATYLGIGLVALFLYFVMVKPALRRAFPPPP 520

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                +          + +A       +   +L +   D                 +++ 
Sbjct: 521 EAVAALPSPDEPVLDGLPTAAAVAAEEDVEGSLVALESDK-------------AKYERNL 567

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
                +   + +  A +++ W   E
Sbjct: 568 EYARQIARQDPKIVATVVKSWVSDE 592


>gi|170741410|ref|YP_001770065.1| flagellar MS-ring protein [Methylobacterium sp. 4-46]
 gi|168195684|gb|ACA17631.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46]
          Length = 572

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 193/571 (33%), Positives = 306/571 (53%), Gaps = 18/571 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M+  +Q  + + +   LG  R+  L  + L   +      ++++ P  + LY  L   DV
Sbjct: 1   MSGREQAERLWNNIIELGARRLAALGIIGLTVFLAVGLGAYYLSRPAQETLYGGLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI   L +ANI F +S +G+++ VP     +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  GRIGSVLKDANIPFDVSTDGTAVLVPYGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ++ G+ AARVHIV+PD GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQTMKGVKAARVHIVLPDRGSFRREQQPPSASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                  A+AIRHLVA+A+P +    VTV+ + G LL + +++     GK  ++ + +  
Sbjct: 180 PADDGSGAQAIRHLVASAIPGMKPERVTVIGTDGTLLLSGDDVGNAPTGKMANLEKLVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI+ NI + L  +LGV NF  +V A LN D     E +++PD +VERS++ +++ + S+ 
Sbjct: 240 EIQDNIRRTLTPYLGVGNFEVSVAARLNTDKTSTNETIFNPDQRVERSVKATRETENSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   T +QN+P    R      S   T K+E+ +NYEI++K+I T  D Y ++++S+
Sbjct: 300 RSSQRPTTAQQNLPDQRTRSDGNDTSSTETQKREDLTNYEISSKTIQTVSDGYGIKQISV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VNK RL+ + G +A    ID  + EI ++V++A G +  RGD + + ++ F+ +   
Sbjct: 360 AVLVNKSRLSSLAGPNAPPAAIDQQIGEIEQLVASAAGFSKERGDHVKVAAVGFVNDGAP 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                 +S  ++L R  AT+INA   LV   L+ + GL    R      A + E+   + 
Sbjct: 420 LEPVPPLSLTEVLMRQSATLINAATILVVASLLIWFGLRPALRAILEVPAAEQEIAALAA 479

Query: 480 LSPPPISSAVTTGLMPNDNIAL----------------DSSNQDIFSHSRNLQSRINSYV 523
                   A+      +    L                    Q       +L   + + +
Sbjct: 480 EGAAGAVPALPGAEAGSAAAGLLEGSPEAAALAAAGGTPGPAQLGPPVMASLIDDLTNRM 539

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +     +L  MIE +EE+ A IL++W   E 
Sbjct: 540 NSSPQKKLEQMIEFDEEQAANILKRWLMREE 570


>gi|288942636|ref|YP_003444876.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180]
 gi|288898008|gb|ADC63844.1| flagellar M-ring protein FliF [Allochromatium vinosum DSM 180]
          Length = 577

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/552 (20%), Positives = 220/552 (39%), Gaps = 19/552 (3%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +S   +   R + L   +   ++  +A  F+   P Y  L+ +LE ++   +  AL++ 
Sbjct: 33  LQSFREMPVGRQIALLGTLAGGLVAVVAILFWALKPTYVPLFSQLEGAEAAEVMEALTQL 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + +R+ ++   I +P   V + R+ LA QGLP S ++ G+EL  + + FG +  ++   
Sbjct: 93  GVPYRVDNSSGRIEIPQQRVAETRLQLAGQGLPKS-ADIGFELLQQESGFGTSRLIEGAR 151

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSA 188
             RALEGE+ R+I ++  +  ARVHI   +   F +    P+ASV++             
Sbjct: 152 FQRALEGELGRSIAALEPVDKARVHIARAERSVFVRERVPPSASVVVHLKGSRGLTDTQV 211

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246
            AI HLV+++VP L    VTV+D +G+LLT++  +    +    L     ++      + 
Sbjct: 212 GAIVHLVSSSVPELTPDRVTVVDQSGRLLTSDGEDKSSRLSLDHLEYTHRVESRYVDRVQ 271

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +G D  R  V A+L+    +  +  YDPD    RS +L+++ +           
Sbjct: 272 SLLVPIVGRDRVRVQVSADLDFSRVERTQESYDPDKTAIRSEQLNEEERIGADPLAGGIP 331

Query: 307 TVEQNMPHV-----SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               N P         +      ++ ++  ++   NYE++            + RL+ AV
Sbjct: 332 GALTNQPPAGGVVGQQQAAQGNATVPSSRSQQTTRNYEVDRTISHIQETPGGVRRLTAAV 391

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VV+        G      + D+ +  +  +V  A G N  RGD++ + S  F+     + 
Sbjct: 392 VVDYVDQVNEAGEPIRVPRSDAEMETLRDLVREAIGFNEARGDSLQVRSASFVPESDEDE 451

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             +               +  +  + G LL   + L  ++   N    K  E        
Sbjct: 452 EPIWTQPW---------FLELVKIVGGLLLALIVMLTVVKPALNQILPKPPEPEKPQEDE 502

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                +    G    +      S     S    L         +     +  M+  + +R
Sbjct: 503 ETRALTDGIEGEGEGEEGEEIVSLTHEPSGLAALMGPKGPDRQQLDLEAVREMVREDPKR 562

Query: 542 FAKILRKWARSE 553
             +++++W   +
Sbjct: 563 VVQVMKQWLAED 574


>gi|229591853|ref|YP_002873972.1| flagellar MS-ring protein [Pseudomonas fluorescens SBW25]
 gi|229363719|emb|CAY51114.1| flagellar M-ring protein [Pseudomonas fluorescens SBW25]
          Length = 593

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/586 (19%), Positives = 225/586 (38%), Gaps = 53/586 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 22  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  S SN G+E+ DK    G + FM+
Sbjct: 82  AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+       +   GK     + ++  +  
Sbjct: 202 GQVLAIVNLVATSVPELSKSQITVVDQKGNLLSDQGENSALTQAGKQFDYSRRVESMLTQ 261

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS + + + + +    P+
Sbjct: 262 RVHNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSEQRTAANGPPQ 321

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                  
Sbjct: 322 GVPGALSNQPPAPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 381

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388
            + +   N+E++     T     ++ RLS++VVV+         G           LA  
Sbjct: 382 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNAADGAVTRAPWSADELARF 441

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ +M F   +                  F  ++  ++ ++ 
Sbjct: 442 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIAEPAF----YSQPWFWDIVKQVLGVLF 497

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +      +  K  ++                 G + ND ++L      +
Sbjct: 498 ILVLVFGVLRPVLNNITGNGKK--QLAAFGGSDVELGGMGGLDGELANDRVSLGGPQSIL 555

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       S         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 593


>gi|330818622|ref|YP_004362327.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3]
 gi|327371015|gb|AEA62371.1| Flagellar M-ring protein FliF [Burkholderia gladioli BSR3]
          Length = 599

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/524 (22%), Positives = 213/524 (40%), Gaps = 23/524 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL ++NI ++ +D G +I VP+S+V + R+ LA+ G
Sbjct: 86  WSRAPDYKVLYSNLSDRDGGAIIAALQQSNIPYQFTDAGGAILVPASLVHETRLKLASMG 145

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI SI+ + AARVH+ +P  
Sbjct: 146 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELERTIASINAVRAARVHLAIPKP 203

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +              AI  +VA+ VP++   +VT++D  G LL+ 
Sbjct: 204 SVFVREREAPSASVFVDLYPGRVLDDGQVLAITRMVASGVPDMPAKNVTIVDQDGNLLSQ 263

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
            +    +    L  VQ ++   +  I+  LA   G  N R+ V A+++    +     + 
Sbjct: 264 QQSAAGLDANQLKYVQQVERNTQKRIDAILAPMFGAGNTRAQVSADVDFSRAEQTSESFS 323

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLENT 329
           P+   +++   S+    S     S          N P                      +
Sbjct: 324 PNGTQQQAAIRSQQTSSSTEMSQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPIS 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
           D+K+  +NYE+N            ++RLS+AVVVN   + +  G    Q      L ++ 
Sbjct: 384 DRKDSTTNYELNKTVSHVEQATGGIKRLSVAVVVNNLPVADAKGHVTMQPLSADKLRQVE 443

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  A G +++RGD++ + +  F E     +        D+++          + +   
Sbjct: 444 QLVKDAMGFDAKRGDSVNVVNSQFTELADPLANVPWWRTPDMIAMAKDIAKWLGIGVAAA 503

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
            L       A+RR     +      G       P          +        S      
Sbjct: 504 ALYFMFVRPAMRRAFPPPEPAAASAGALPGPDEPA---------LDGLPALESSLGAQAS 554

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +  L    +    +++      +   + +  A +++ W   E
Sbjct: 555 PEAALLSFEADKQRYERNLDYAKMIARQDPKIVATVVKNWVTDE 598


>gi|83647861|ref|YP_436296.1| flagellar MS-ring protein [Hahella chejuensis KCTC 2396]
 gi|83635904|gb|ABC31871.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
          Length = 572

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/568 (22%), Positives = 236/568 (41%), Gaps = 29/568 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +++           L   R L+L   +   I +  A   + N P Y  LY  + V D  
Sbjct: 19  DLVENRSDMMLGFNRLSLLRQLVLMVGVAASIAMGAAIILWANEPAYQPLYPDMSVYDST 78

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +S  LS+ NI F++     ++ V +  V  AR+ LAA G+ +     GYEL DK    G
Sbjct: 79  EVSDILSQNNIHFKVEPKSGALLVAAEDVSAARMRLAAAGV-TQDRTIGYELLDKDQGLG 137

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + FM+     R LEGE+ARTI S+  +  ARVH+ +P    F +   RP+ASV++    
Sbjct: 138 SSQFMESTRYRRGLEGELARTISSLRNVKNARVHLAIPKQSVFVRDKRRPSASVLVELTG 197

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAI 237
                    EAI +LVA +VP +D  DVTV+D  G LL+ N    +     +     + +
Sbjct: 198 SRSLHQDQVEAIVNLVAGSVPEMDHRDVTVVDQRGNLLSQNNLTEDDLRTSREFQYARRM 257

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +   +N  L   LG   FR+ V A+++    +  +  ++PD +  RS +   + + +
Sbjct: 258 EEVLTGRVNSILEPILGPGRFRAEVSADVDFTAVEQAQETFNPDPQAVRSEQEIGEQRIA 317

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTKSIA 346
            +   +       N P                            +K+   NYE++     
Sbjct: 318 GS--NQGVPGALSNQPPGVAAVPEQAGVAGAAANATANSQATDIRKQTVRNYEVDRTVSY 375

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     K++RL++AVVV+  R     G    +   ++ L  +  +V  A G ++ RGD++
Sbjct: 376 TKQHQGKVQRLTVAVVVDDLRRVGADGAVTTEAWPEAELQRLTVLVRDAVGYSAARGDSV 435

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + +  F+  ++  S      +          +I   V  +  L++ F  +    +  + 
Sbjct: 436 NVINTPFMAEEVEISDYEAPLWE---QPWIRELIKWGVAFLIVLILVFGVIRPTFKNLSS 492

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A    +             ++ +G+   +++ L+++   +   S        S   ++
Sbjct: 493 GGADAKNLALAGDEDGLAELESLGSGVGEGESVGLNAAGDFLLPGS--------SEGYEK 544

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEI 554
               L  +I  +  R A+++R+W  ++ 
Sbjct: 545 KINALKGLIAEDPGRVAQVVRQWVMADE 572


>gi|167909065|ref|ZP_02496156.1| flagellar MS-ring protein [Burkholderia pseudomallei 112]
          Length = 573

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 56  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 115

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 116 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 173

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 174 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 233

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 234 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 293

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 294 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 353

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 354 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 413

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 414 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 473

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L   +++ 
Sbjct: 474 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 530

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       R      +++      +   + +  A +++ W   E
Sbjct: 531 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 572


>gi|34498591|ref|NP_902806.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
 gi|34104445|gb|AAQ60803.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
          Length = 579

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/572 (22%), Positives = 240/572 (41%), Gaps = 31/572 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L +      +L   R ++  + +     + + A     +P Y  L+  L   D  +++ 
Sbjct: 16  RLNEAGDRFKALPNNRKILFLTALAAIFAVVVGAVLLNRTPSYKILFSNLADRDGGQVTA 75

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL + N+ +++   G  ISVP+  V   R+ LAAQGLP +S   G+EL D    FG++ F
Sbjct: 76  ALQQMNVPYQL-GEGGVISVPADKVYDVRLKLAAQGLPKASG-VGFELMDN-QKFGISQF 132

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   R++EGE+ARTI++IS + +ARVHI  P    F +    PTASVM++     + 
Sbjct: 133 AEQVNYQRSIEGELARTIEAISSVQSARVHIATPKQSVFVREQQSPTASVMLQLYPGRML 192

Query: 186 K--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHE 240
                  I HLV+++VPNL + +VT++D  G LL+     +    +  + L  V+ I+  
Sbjct: 193 DGGQVAGILHLVSSSVPNLPLKNVTIVDQDGNLLSKQAGPDENSGLDQRQLGFVRQIEEG 252

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR---S 297
               I   L    G  N R+ V A ++    +     Y P+S    S   S+       +
Sbjct: 253 YVKRIEDILEPIFGRGNARAQVTANVDFSETEQTSETYRPNSSPNPSATRSQQISEKLVN 312

Query: 298 ETSQPESAVTVEQNMPHVSDRKV---------------PLPRSLENTDKKEEQSNYEINT 342
            ++ P        N P  +                       S   T +++  +NYE++ 
Sbjct: 313 GSANPTGVPGALSNQPPSAASAPITLPPGAAPGTANLSGGSVSASGTLQRDITTNYEVDK 372

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
               T      ++RLS AVVVN  R+ +  G           + +IN +V  A G NS R
Sbjct: 373 TIQHTKVPTGVVKRLSAAVVVNYRRMPDKSGEMKPTPLTPQEVQQINNLVKEAMGYNSGR 432

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GDT+ + +  F +N    +       +D +S +  +++   +  +  L + F  +  + R
Sbjct: 433 GDTLNVVNAAFADNAQPVTMQE--RVIDYVSGNGTSLVKYGLLGIAVLYLLFGVVRPIMR 490

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                 A      G++  +          G+   +     ++             +    
Sbjct: 491 DLVRPPAPAPGAEGEAAAAGAAGPGGRLLGVAGEEGEPGVAAAMAGGGEDPREAQK---R 547

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               +   +  +++ +    A+I+++W  ++ 
Sbjct: 548 QYSSNLEAVRELVKSDPRMAAQIIKEWISADE 579


>gi|126441455|ref|YP_001057275.1| flagellar MS-ring protein [Burkholderia pseudomallei 668]
 gi|217425051|ref|ZP_03456547.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576]
 gi|254295774|ref|ZP_04963231.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|126220948|gb|ABN84454.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668]
 gi|157805913|gb|EDO83083.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|217392071|gb|EEC32097.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 576]
          Length = 598

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L   +++ 
Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDVLALDGLPSPDKKQLAEEDEEH 555

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       R      +++      +   + +  A +++ W   E
Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597


>gi|304312787|ref|YP_003812385.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1]
 gi|301798520|emb|CBL46750.1| Flagellar basal-body M-ring protein [gamma proteobacterium HdN1]
          Length = 575

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 111/567 (19%), Positives = 227/567 (40%), Gaps = 33/567 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + ++       +L   R + L   +   + +      +   P +  L+  + + + ++++
Sbjct: 20  NPIMAALDGLGNLPWLRQVGLMVGLAASVAIGFGVVLWSTEPEFRPLFTDVSMIEASQVA 79

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I F++      + V +  +  AR+ LA +GLP   +N GYEL DK   FG + 
Sbjct: 80  DVLAREKIQFKVDPASGLVMVRAEKINDARMALAKEGLP-GGNNMGYELLDKEQGFGTSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FM++    R++EGE+A+TI S++ +  ARVH+ +P    F     +PTASV +       
Sbjct: 139 FMEKTRYFRSIEGELAKTISSLTPVRNARVHLAIPKRSVFINDKRKPTASVFVELYPSRS 198

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHE 240
            +     AI HLVA++VP +   DVTV+D  G+LL+ +     +    + L     I+ +
Sbjct: 199 LERDQVAAIVHLVASSVPEMSSKDVTVVDQRGRLLSEDTSNGEMTIAARQLDYQHNIEEK 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I   L   LG + F+  + A+++ +  +     Y+PD    RS +    +++S  +
Sbjct: 259 YLGRIRDLLEPLLGPERFKVQLTADIDFNVVEQTAESYNPDLPALRSEQTL--SEKSSAA 316

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEINTKSIATTH 349
            P        N P  +           N             +++   NYE++     T  
Sbjct: 317 GPMGVPGALSNQPPGAASVPEQATGSNNAGNNASSTDAGNQRQQATRNYELDRTISHTRR 376

Query: 350 DNYKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYLAEINKIVSAATGINSRRGD 404
               ++RLS+AVV++              +       ++ L  I  ++  A G ++ RGD
Sbjct: 377 QVGGIKRLSVAVVLDDKWQNPAADAAPGTQPTRVALSEAELERITLLIKDAVGYDAARGD 436

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           ++++ +  F   Q  +   + +         F  VI  +   +  +++ F  L  + +  
Sbjct: 437 SVSVINQPFSPVQFDSIPDLPIW----QQAWFQDVIRQVAGWLVVIILIFGVLRPILKGL 492

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +     + S    + A         + +   ++        N          
Sbjct: 493 ------AFQGKEDEVDSSLESALASVGADGSLGDSSFAGADVTFSGSGPNPLLPGPDASF 546

Query: 525 KQSDLRLLHMIEINEERFAKILRKWAR 551
           +Q    +  ++  +  R A++++ W  
Sbjct: 547 EQHIDAIRALVAEDPRRVAQVVKSWIE 573


>gi|53717872|ref|YP_106858.1| flagellar MS-ring protein [Burkholderia pseudomallei K96243]
 gi|126453288|ref|YP_001064517.1| flagellar MS-ring protein [Burkholderia pseudomallei 1106a]
 gi|134283661|ref|ZP_01770360.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|162210024|ref|YP_331831.2| flagellar MS-ring protein [Burkholderia pseudomallei 1710b]
 gi|226199798|ref|ZP_03795349.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan
           9]
 gi|242317746|ref|ZP_04816762.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b]
 gi|254182183|ref|ZP_04888780.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|254188113|ref|ZP_04894625.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196619|ref|ZP_04903043.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13]
 gi|254259466|ref|ZP_04950520.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a]
 gi|52208286|emb|CAH34218.1| flagellar M-ring protein [Burkholderia pseudomallei K96243]
 gi|126226930|gb|ABN90470.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106a]
 gi|134245070|gb|EBA45165.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|157935793|gb|EDO91463.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653362|gb|EDS86055.1| flagellar M-ring protein FliF [Burkholderia pseudomallei S13]
 gi|184212721|gb|EDU09764.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|225928149|gb|EEH24185.1| flagellar M-ring protein FliF [Burkholderia pseudomallei Pakistan
           9]
 gi|242140985|gb|EES27387.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1106b]
 gi|254218155|gb|EET07539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1710a]
          Length = 598

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L   +++ 
Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 555

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       R      +++      +   + +  A +++ W   E
Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597


>gi|15964399|ref|NP_384752.1| flagellar MS-ring protein [Sinorhizobium meliloti 1021]
 gi|307311541|ref|ZP_07591182.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C]
 gi|307318896|ref|ZP_07598327.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83]
 gi|17380368|sp|O54239|FLIF_RHIME RecName: Full=Flagellar M-ring protein
 gi|15073576|emb|CAC45218.1| Flagellar M-ring transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|306895310|gb|EFN26065.1| flagellar M-ring protein FliF [Sinorhizobium meliloti AK83]
 gi|306899558|gb|EFN30187.1| flagellar M-ring protein FliF [Sinorhizobium meliloti BL225C]
          Length = 557

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 269/552 (48%), Positives = 358/552 (64%), Gaps = 4/552 (0%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN P ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRPSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + +   N      L +VQ +Q 
Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +  +KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL E+ KIVS+A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +        M++L+R+   +INAL F+    LV + G+  L R            G  + 
Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSH--SRNLQSRINSYVSKQSDLRLLHMIEI 537
           L  P  S A                  D      +   ++  N  V +  + RL  M+EI
Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNLGDEAGFNRRVKEGPERRLARMVEI 539

Query: 538 NEERFAKILRKW 549
           +EER AKILRKW
Sbjct: 540 SEERAAKILRKW 551


>gi|237810412|ref|YP_002894863.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346]
 gi|237505247|gb|ACQ97565.1| flagellar M-ring protein FliF [Burkholderia pseudomallei MSHR346]
          Length = 598

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 128/525 (24%), Positives = 217/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L   +++ 
Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDVLALDGLPSPDKNQLAEEDEEH 555

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       R      +++      +   + +  A +++ W   E
Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597


>gi|167617536|ref|ZP_02386167.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4]
          Length = 594

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/525 (23%), Positives = 213/525 (40%), Gaps = 22/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR           V              + +          +     +
Sbjct: 496 AALYFMFVRPALRRAFPPPAEPAAAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALL 555

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              S            +++      +   + +  A +++ W   E
Sbjct: 556 AFESEK-------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 593


>gi|896313|gb|AAB06801.1| flagellar MS ring [Pseudomonas aeruginosa]
          Length = 599

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 116/586 (19%), Positives = 238/586 (40%), Gaps = 52/586 (8%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F  + + +   R + L   +   + +  A   +   P Y  LY  L   D NR+  AL
Sbjct: 27  LSFLDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEAL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I +++  N  ++ V +  +G+AR+ +A+ G+  + +N G+E+ DK  + G + FM+
Sbjct: 87  TAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV--Y 185
                R LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++          
Sbjct: 147 ATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEP 206

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD   VTV+D  G LL+  +   E  +  K     + ++  +  
Sbjct: 207 SQVMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQQELSELTMADKQFDFTRRMEGLLTQ 266

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   L     ++ V A+++    +    +Y+PD    RS + + + +++ +  P+
Sbjct: 267 RVHNILQPVLDNGRNKTEVSADVDFSAVESTSEMYNPDQPALRSEQHNNEERQNSS-GPQ 325

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL---------------------------------ENTD 330
                  N P           +                                      
Sbjct: 326 GVPGALSNQPPGPASAPQQATASAPADYVAPGQPLKDANGQTIIDPKTGKPELAPYPTDK 385

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEIN 389
           + +   NYE++     T     +L RLS+AVV++     +   G  + Q      LA   
Sbjct: 386 RDQTTRNYELDRSISYTKQQQGRLRRLSVAVVLDDQMKVDAKTGEVSHQPWSADELARFT 445

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           ++V  + G ++ RGD++++ +  F   Q     ++           F  ++  ++ ++  
Sbjct: 446 RLVQDSVGYDASRGDSVSVINAPFAPAQAEEIDSIPF----YSQPWFWDIVKQVLGVLFI 501

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV-TTGLMPNDNIALDSSNQDI 508
           L++ F  L  +          K   GG                G + +D +++   +  +
Sbjct: 502 LVLMFGVLRPVLSNITGGGKGKSLAGGGGGRDGDLALGESGLEGSLADDRVSIGGPSSIL 561

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       +         + +++  +  R A+++++W  ++ 
Sbjct: 562 LPSP--------TEGYDAQLNAIKNLVAQDPGRVAQVVKEWINADE 599


>gi|83591884|ref|YP_425636.1| flagellar MS-ring protein [Rhodospirillum rubrum ATCC 11170]
 gi|83574798|gb|ABC21349.1| Flagellar FliF M-ring protein [Rhodospirillum rubrum ATCC 11170]
          Length = 551

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/553 (26%), Positives = 255/553 (46%), Gaps = 9/553 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +  F ++  +LG  R+  LA V +  I   +     ++    + LY  L  +D  +I   
Sbjct: 1   MNSFVQTMRNLGPVRLAALAGVAIALIGFVIYVASRLSGTSMELLYGDLAPADAKQIIAQ 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E NI ++++++G S+ VPS  V K R+ +A   LP S +  GYE+FD  ++ G T F 
Sbjct: 61  LEERNIPYQMANDGRSVLVPSDQVLKLRVQMAESALP-SGATVGYEIFDSASALGSTQFT 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185
           Q I  VRALEGE+ART+++I G+  ARVH+V+P    F +    P+ASV++         
Sbjct: 120 QNINMVRALEGELARTVRTIQGVEGARVHLVLPKREPFTRDQVAPSASVVLLMKGRRLQP 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
           +   A+++LVAAAVP +  G V+++D  G LLT    E    I      + +A +  +  
Sbjct: 180 EQVVAVQNLVAAAVPGMKPGQVSIIDERGTLLTRGMGEEGALIAQNQDELRKAEERRLAQ 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           +I + L   +GV   R+ VVA+++ +        +DP+ +V RS     +  +S      
Sbjct: 240 SIEQLLERTIGVGKVRAEVVADMDFNRIVTSRESFDPNGQVVRSTTTVDEQNKSSD--AV 297

Query: 304 SAVTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           S V+V+QN+P          P S  + ++ EE  NYEI         +   ++RLS+AV+
Sbjct: 298 SNVSVQQNLPEAQFAGNGGAPTSQTSENRTEETVNYEITKIVTNEVKEAGVVKRLSVAVM 357

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V+    T   G +  Q + D  + +I  +V +A G +  RGD I + +M F++       
Sbjct: 358 VDGTSTTNDAGVTTWQPRSDDEMQKITSLVRSAMGYDQARGDQIEVVNMQFIDPGALFDD 417

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                F+         +   L   V  +L+  L +  L +    +     + GG  +L+ 
Sbjct: 418 AAAWEFLGFTKAEVMKMAEGLGVAVVAILIILLVVRPLVQRAFENLPSGADQGGAGLLTA 477

Query: 483 PPISSAVTTGLMPNDNIA--LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              S    TG       A  L   ++   +       ++   V   S  ++  +++ + E
Sbjct: 478 EMQSHPQLTGPGGGSIPAGMLGMPDEMDDAEELIDIDKVEGRVKASSLRKIGEIVDKHPE 537

Query: 541 RFAKILRKWARSE 553
               I+R W   E
Sbjct: 538 EALSIIRNWLYQE 550


>gi|157145268|ref|YP_001452587.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895]
 gi|157082473|gb|ABV12151.1| hypothetical protein CKO_01005 [Citrobacter koseri ATCC BAA-895]
          Length = 558

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/569 (22%), Positives = 228/569 (40%), Gaps = 49/569 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIIVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
             RALEGE+ARTI+++  +  ARVH+ MP    F +    P+ASV   +           
Sbjct: 132 YQRALEGELARTIETLGPVKRARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D  G LLT +      +    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRRIES 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    +++  S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAVLRSRQLNESEQIGSGYPGG 311

Query: 305 AVTVEQNMPHVSDRKVPLP------------------RSLENTDKKEEQSNYEINTKSIA 346
                 N P  ++                         ++    ++ E SNYE++     
Sbjct: 312 VPGALSNQPAPANAAPISTPPANQQNAQNTQTTNNTNSNVPRNTQRNETSNYEVDRTIRH 371

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T  +   ++RLS+AVVVN   L +              + +I  +   A G + +RGDT+
Sbjct: 372 TKLNVGDVQRLSVAVVVNYRALPDGK----PLPLTTEQMKQIEDLTREAMGFSDKRGDTL 427

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + +  F                         +I+A  +L+  L+   L   A+R     
Sbjct: 428 NVVNSPFTATDDLGGELP----FWKQQAFIEQLISAGRWLLVLLVAWILWRKAVRPQLAR 483

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              +      ++ +                +       ++D  +  R    R+ + V  Q
Sbjct: 484 RAEETKAAQEQAQVR------------QETEEAVEVRLSKDEQTQQRRANQRLGAEVMSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
              R+  M + +    A ++R+W  ++ E
Sbjct: 532 ---RIREMSDNDPRVVALVIRQWMNNDHE 557


>gi|312962276|ref|ZP_07776768.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6]
 gi|311283613|gb|EFQ62202.1| flagellar M-ring protein FliF [Pseudomonas fluorescens WH6]
          Length = 592

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/586 (19%), Positives = 227/586 (38%), Gaps = 54/586 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 22  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETL 81

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  S SN G+E+ DK    G + FM+
Sbjct: 82  AAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDSNIGFEILDKDQGLGTSQFME 141

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 142 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFSGRSLEP 201

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+       +   GK     + ++  +  
Sbjct: 202 GQVMAIINLVATSVPELSKSQITVVDQKGNLLSDMAENSALTQAGKQFDYSRRMESMLTQ 261

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS + + +  R+ ++ P+
Sbjct: 262 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSTSEQ-RTASNGPQ 320

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                  
Sbjct: 321 GVPGALSNQPPSPASAPQTTGGAAATAGAIQPGQPLLDANGQQIMDPATGQPMLAPYPAD 380

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388
            + +   N+E++     T     ++ RLS++VVV+         G           LA  
Sbjct: 381 KRNQSTKNFELDRSISHTKQQQGRVNRLSVSVVVDDQVKVNPADGAVTRAPWSADELARF 440

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ +M F   +                  F  ++  ++ ++ 
Sbjct: 441 TRLVQDAVGFDASRGDSVSVINMPFSAERGETIAEPAF----YSQPWFWDIVKQVLGVLF 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +      +  K  ++                 G + ND ++L      +
Sbjct: 497 ILVLVFGVLRPVLNNITGNGKK--QLAAFGGGDVELGGMGGLDGELANDRVSLGGPQSIL 554

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       S         +  ++  +  R A+++++W  ++ 
Sbjct: 555 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 592


>gi|161502909|ref|YP_001570021.1| flagellar MS-ring protein [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160864256|gb|ABX20879.1| hypothetical protein SARI_00968 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 560

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/572 (22%), Positives = 226/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIIVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQIGAGYPGG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN---------------------TDKKEEQSNYEINTK 343
                 N P   +                                  ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPGNQQNAQNTAQTSTSTNSNSTGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  L+   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDETGGELP----FWQQQSFIDQLLAAGRWLLVLLVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|260568707|ref|ZP_05839176.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40]
 gi|260155372|gb|EEW90453.1| flagellar M-ring protein FliF [Brucella suis bv. 4 str. 40]
          Length = 580

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYMSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|149928162|ref|ZP_01916408.1| flagellar M-ring protein FliF [Limnobacter sp. MED105]
 gi|149823147|gb|EDM82385.1| flagellar M-ring protein FliF [Limnobacter sp. MED105]
          Length = 575

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/576 (21%), Positives = 236/576 (40%), Gaps = 42/576 (7%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + +    +    L +   + +   + + I +  +   + N   Y  L+  L   D   I 
Sbjct: 17  NPITNMQQRFAKLPQKNKMGILIGVPLLIAVIASLLMWANQTSYRVLFSGLNDQDGGAIV 76

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL++  + +  +  G++I VPS+ V   R+ LA+QGLP   S SG+E  D     G+T 
Sbjct: 77  EALTQMKVPYEFNTAGTAILVPSNKVYDTRLALASQGLPK-GSVSGFEAMDN-QKLGITQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE+ R+IQSIS + +ARVH+ +P    F +    P+AS+++       
Sbjct: 135 FQEQVNYQRALEGELVRSIQSISAVQSARVHLAIPKPSIFIREKQTPSASIVLNLFGSRT 194

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241
                   I HLVA+++P ++  DV+++D +G+LLT     E  +    L+    I+  +
Sbjct: 195 LSEPQINGIVHLVASSLPGMNPEDVSIVDQSGRLLTGKTQLESGLNPTQLAYTNQIEQSL 254

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK----VERSIRLSKDAQRS 297
              I   L+   G +N R+ V A ++    +  + +Y P+        RS ++S+    S
Sbjct: 255 TSRIVDILSPVFGSENVRATVTANMDYSMSERTDEIYKPNGDTTQATIRSQQISESNDGS 314

Query: 298 ETSQPESAVTVEQNMPHVSDRK-----------------VPLPRSLENTDKKEEQSNYEI 340
             + P+    V  N P                          P    ++ +K+   NYE+
Sbjct: 315 SNANPQGIPGVMANTPPGEAAANIGQNPQQALANGVNGGTSTPTQTNSSTRKDSTVNYEV 374

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +     T     K+ERLS AVVVN   +T+  G +         + +++ +V  A G + 
Sbjct: 375 DKSVQYTKSQVGKIERLSAAVVVNYKTITDPKGETRQVPLTPEEITQLDSLVKQAIGFDE 434

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD + + +  F +       T+ +           ++   +   +   ++ F  L  +
Sbjct: 435 QRGDAVNVVNQAFTK---VEEETIPMWAQQETMDLAKSLGMPIGVALIAAILVFGVLRPM 491

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
            +   +D   +G         P   +              +   N          +  + 
Sbjct: 492 MKPAEVDLFDEGPELLPGQRMPLLANQ-------------VGGDNDAELLEQLQREGTLP 538

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
               ++   +L  + + + +  A I++ W   E ++
Sbjct: 539 GMNRQEKMEKLRQLAKEHPQIVASIVKNWVNGETQN 574


>gi|18182538|gb|AAL65160.1|AF453480_2 flagellar MS ring protein [Burkholderia cepacia]
          Length = 587

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/528 (23%), Positives = 218/528 (41%), Gaps = 28/528 (5%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
           A   +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ L
Sbjct: 75  ALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPSNQVHETRLKL 134

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AA GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+SI+ +  ARVH+ 
Sbjct: 135 AAMGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESINAVRGARVHLA 192

Query: 158 MPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +    P+ASV +             +AI  +V++ VP++   +VT++D  G 
Sbjct: 193 IPKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMPAKNVTIVDQDGN 252

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LLT       +    L  VQ ++H  +  I+  LA   G  N RS V A+L+    +   
Sbjct: 253 LLTQTASASGLDASQLKYVQQVEHNTQKRIDAILAPIFGAGNARSQVSADLDFSKIEQTS 312

Query: 276 IVYDPDSKVERSIRLSKDAQRSET----------SQPESAVTVEQNMPHVSDRKVPLPRS 325
             Y P+   +++   S+    +            ++  +                  P++
Sbjct: 313 ESYGPNGTPQQAAIRSQQTSSATELAQAARRACRARCRTRRRSRPPRRSSPGNGQNAPQT 372

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
              +D+K++ +NYE++     T      ++RLS+AVVVN   + +  G    Q    + L
Sbjct: 373 TPVSDRKDQTTNYELDKTIRHTEQPMGSVKRLSVAVVVNYQPVADAKGHVTMQPLPPAKL 432

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A++ ++V  A G + +RGD++ + +  F       +        D+++          + 
Sbjct: 433 AQVEQLVKDAMGYDEKRGDSVNVVNSAFSTVSDPYADLPWWRQPDMIAMAKEAAKWLGIA 492

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
                L       A+RR     +     +             A        D + L   N
Sbjct: 493 AAAAALYFMFVRPAMRRAFPPPEPAAPALAAPEDAVALDGLPAPDKAAEEPDPLLLGFEN 552

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +                  +++      +   + +  A +++ W   E
Sbjct: 553 EK--------------NRYERNLDYARTIARQDPKIVATVVKNWVSDE 586


>gi|322616962|gb|EFY13870.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618201|gb|EFY15093.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625872|gb|EFY22691.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626324|gb|EFY23134.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632739|gb|EFY29484.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639081|gb|EFY35774.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640397|gb|EFY37053.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647242|gb|EFY43741.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649910|gb|EFY46331.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322660296|gb|EFY56534.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662977|gb|EFY59184.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668162|gb|EFY64321.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674079|gb|EFY70173.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675569|gb|EFY71643.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322686714|gb|EFY82692.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195398|gb|EFZ80578.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198074|gb|EFZ83191.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323207544|gb|EFZ92492.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211017|gb|EFZ95877.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217529|gb|EGA02248.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219604|gb|EGA04088.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231551|gb|EGA15664.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235994|gb|EGA20073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240564|gb|EGA24607.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245456|gb|EGA29456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250226|gb|EGA34118.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253963|gb|EGA37787.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255510|gb|EGA39271.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262107|gb|EGA45670.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266230|gb|EGA49720.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270661|gb|EGA54102.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 560

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEETKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|261219820|ref|ZP_05934101.1| flagellar M-ring protein FliF [Brucella ceti B1/94]
 gi|265996839|ref|ZP_06109396.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1]
 gi|260918404|gb|EEX85057.1| flagellar M-ring protein FliF [Brucella ceti B1/94]
 gi|262551136|gb|EEZ07297.1| flagellar M-ring protein FliF [Brucella ceti M490/95/1]
          Length = 580

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 316/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|261215451|ref|ZP_05929732.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya]
 gi|260917058|gb|EEX83919.1| flagellar M-ring protein FliF [Brucella abortus bv. 3 str. Tulya]
          Length = 580

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|254695100|ref|ZP_05156928.1| flagellar MS-ring protein [Brucella abortus bv. 3 str. Tulya]
          Length = 575

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 4   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAVLDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 483 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 542 ERVAAVLKQWIHETASGREAD 562


>gi|256158325|ref|ZP_05456229.1| flagellar MS-ring protein [Brucella ceti M490/95/1]
 gi|256252741|ref|ZP_05458277.1| flagellar MS-ring protein [Brucella ceti B1/94]
          Length = 575

 Score =  379 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 316/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 4   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+  AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGRALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 483 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 542 ERVAAVLKQWIHETASGREAD 562


>gi|52428288|gb|AAU48881.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 23344]
          Length = 543

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/525 (24%), Positives = 216/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 26  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 85

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S + + AARV++ +P  
Sbjct: 86  LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 143

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 144 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 203

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 204 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 263

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 264 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 323

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 324 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 383

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 384 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 443

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L   +++ 
Sbjct: 444 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 500

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       R      +++      +   + +  A +++ W   E
Sbjct: 501 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 542


>gi|256059797|ref|ZP_05449992.1| flagellar MS-ring protein [Brucella neotomae 5K33]
 gi|261323777|ref|ZP_05962974.1| flagellar M-ring protein FliF [Brucella neotomae 5K33]
 gi|261299757|gb|EEY03254.1| flagellar M-ring protein FliF [Brucella neotomae 5K33]
          Length = 580

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 318/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  ++++L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIVLGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|23500860|ref|NP_700300.1| flagellar MS-ring protein [Brucella suis 1330]
 gi|83269941|ref|YP_419232.1| flagellar MS-ring protein [Brucella melitensis biovar Abortus 2308]
 gi|225628435|ref|ZP_03786469.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo]
 gi|237817511|ref|ZP_04596501.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A]
 gi|256015905|ref|YP_003105914.1| flagellar M-ring protein FliF [Brucella microti CCM 4915]
 gi|260166802|ref|ZP_05753613.1| flagellar MS-ring protein [Brucella sp. F5/99]
 gi|260544149|ref|ZP_05819970.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038]
 gi|260757235|ref|ZP_05869583.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870]
 gi|260759400|ref|ZP_05871748.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292]
 gi|260762643|ref|ZP_05874975.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883039|ref|ZP_05894653.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68]
 gi|261318817|ref|ZP_05958014.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94]
 gi|261749710|ref|ZP_05993419.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513]
 gi|261752953|ref|ZP_05996662.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686]
 gi|261756180|ref|ZP_05999889.1| flagellar M-ring protein FliF [Brucella sp. F5/99]
 gi|265987176|ref|ZP_06099733.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1]
 gi|294852976|ref|ZP_06793648.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026]
 gi|297250144|ref|ZP_06933845.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196]
 gi|38257618|sp|Q8FUS3|FLIF_BRUSU RecName: Full=Flagellar M-ring protein FliF
 gi|23464525|gb|AAN34305.1| flagellar M-ring protein FliF [Brucella suis 1330]
 gi|82940215|emb|CAJ13271.1| Flagellar FliF M-ring protein:Type III secretion system outer
           membrane K protein:Secretory protein YscJ/FliF [Brucella
           melitensis biovar Abortus 2308]
 gi|225616281|gb|EEH13329.1| flagellar M-ring protein FliF [Brucella ceti str. Cudo]
 gi|237787266|gb|EEP61484.1| flagellar M-ring protein FliF [Brucella abortus str. 2308 A]
 gi|255998565|gb|ACU50252.1| flagellar M-ring protein FliF [Brucella microti CCM 4915]
 gi|260097420|gb|EEW81294.1| flagellar M-ring protein FliF [Brucella abortus NCTC 8038]
 gi|260669718|gb|EEX56658.1| flagellar M-ring protein FliF [Brucella abortus bv. 4 str. 292]
 gi|260673064|gb|EEX59885.1| flagellar M-ring protein FliF [Brucella abortus bv. 2 str. 86/8/59]
 gi|260677343|gb|EEX64164.1| flagellar M-ring protein FliF [Brucella abortus bv. 6 str. 870]
 gi|260872567|gb|EEX79636.1| flagellar M-ring protein FliF [Brucella abortus bv. 9 str. C68]
 gi|261298040|gb|EEY01537.1| flagellar M-ring protein FliF [Brucella pinnipedialis B2/94]
 gi|261736164|gb|EEY24160.1| flagellar M-ring protein FliF [Brucella sp. F5/99]
 gi|261739463|gb|EEY27389.1| flagellar M-ring protein [Brucella suis bv. 5 str. 513]
 gi|261742706|gb|EEY30632.1| flagellar M-ring protein FliF [Brucella suis bv. 3 str. 686]
 gi|264659373|gb|EEZ29634.1| flagellar M-ring protein FliF [Brucella pinnipedialis M292/94/1]
 gi|294818631|gb|EFG35631.1| flagellar M-ring protein FliF [Brucella sp. NVSL 07-0026]
 gi|297174013|gb|EFH33377.1| flagellar M-ring protein FliF [Brucella abortus bv. 5 str. B3196]
          Length = 580

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|77457763|ref|YP_347268.1| flagellar MS-ring protein [Pseudomonas fluorescens Pf0-1]
 gi|77381766|gb|ABA73279.1| flagellar M-ring protein [Pseudomonas fluorescens Pf0-1]
          Length = 595

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/586 (19%), Positives = 227/586 (38%), Gaps = 54/586 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+E+ DK    G + FM+
Sbjct: 85  ASADIPYTVEPNSGALLVKADDLSRARLKLAAAGVTPSDGNIGFEILDKEQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+      E  + GK     + ++  +  
Sbjct: 205 GQVVAIINLVATSVPELSKSQITVVDQKGNLLSDQAENAEMTMAGKQFDYSRRMESMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS +   + QR+ ++ P+
Sbjct: 265 RVHNILQPVLGNDRYKAEVSADVDFSAVESTAEQFNPDQPALRSEQSV-NEQRTASNGPQ 323

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                  
Sbjct: 324 GVPGALSNQPPSPASAPQTTGGAAAPASMVQPGQPLVDANGQQIMDPATGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERL-SIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RL    VV ++ ++    G +         LA  
Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLNRLSVSVVVDDQVKINPANGETTRAPWSADELARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ +M F   +      +           F  ++  ++ ++ 
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINMPFSAERGEVIADIPF----YSQPWFWDIVKQVLGVLF 499

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +          K   G                G + ND ++L      +
Sbjct: 500 ILVLVFGVLRPVLNNITGGGKSKELAGLGG--DMELGGMGGLDGELSNDRVSLGGPTSIL 557

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       S         +  ++  +  R A+++++W  ++ 
Sbjct: 558 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 595


>gi|2916780|emb|CAA11947.1| flagellar basal-body MS-ring protein [Sinorhizobium meliloti]
          Length = 557

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 267/552 (48%), Positives = 356/552 (64%), Gaps = 4/552 (0%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN   ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGVVAIGFVLGAGIYVNRRSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI RTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + +   N      L +VQ +Q 
Sbjct: 180 ATVGRSAASSIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPSNSALNQSLGVVQNVQS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +  +KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSSDEAEKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL E+ KIVS+A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLQEMQKIVSSAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +        M++L+R+   +INAL F+    LV + G+  L R            G  + 
Sbjct: 420 DQAVPGPGIMEMLTRNLGGIINALAFVAVAFLVVWFGMRPLARQLGFGGQAGKLEGEAAG 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSH--SRNLQSRINSYVSKQSDLRLLHMIEI 537
           L  P  S A                  D      +   ++  N  V +  + RL  M+EI
Sbjct: 480 LELPDFSPAGAGAGGALMEGFGSDFGFDGGDDLLNLGDEAGFNRRVKEGPERRLARMVEI 539

Query: 538 NEERFAKILRKW 549
           +EER AKILRKW
Sbjct: 540 SEERAAKILRKW 551


>gi|189023215|ref|YP_001932956.1| flagellar MS-ring protein [Brucella abortus S19]
 gi|254691603|ref|ZP_05154857.1| flagellar MS-ring protein [Brucella abortus bv. 6 str. 870]
 gi|254698196|ref|ZP_05160024.1| flagellar MS-ring protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699268|ref|ZP_05161096.1| flagellar MS-ring protein [Brucella suis bv. 5 str. 513]
 gi|254702392|ref|ZP_05164220.1| flagellar MS-ring protein [Brucella suis bv. 3 str. 686]
 gi|254711225|ref|ZP_05173036.1| flagellar MS-ring protein [Brucella pinnipedialis B2/94]
 gi|254731641|ref|ZP_05190219.1| flagellar MS-ring protein [Brucella abortus bv. 4 str. 292]
 gi|256030146|ref|ZP_05443760.1| flagellar MS-ring protein [Brucella pinnipedialis M292/94/1]
 gi|256256791|ref|ZP_05462327.1| flagellar MS-ring protein [Brucella abortus bv. 9 str. C68]
 gi|189021789|gb|ACD74510.1| flagellar M-ring protein FliF [Brucella abortus S19]
          Length = 575

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 4   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 483 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 542 ERVAAVLKQWIHETASGREAD 562


>gi|16760913|ref|NP_456530.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|25304719|pir||AB0752 flagellar basal-body M-ring protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503210|emb|CAD05717.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 560

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 226/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSTAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+   
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|119899006|ref|YP_934219.1| flagellar MS-ring protein [Azoarcus sp. BH72]
 gi|119671419|emb|CAL95332.1| flagellar M-ring protein [Azoarcus sp. BH72]
          Length = 562

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 134/569 (23%), Positives = 229/569 (40%), Gaps = 40/569 (7%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L Q  ++  +L   + +  A+ + + + L + A  +   P Y  L+  L+  D  ++  
Sbjct: 19  RLQQVVQNINALSMRQKIAGAAALALAVALIVGALMWNRQPDYGVLFSNLDERDGGQVIA 78

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL + N+ +R+S NG SI VP   V + R+ LAA GLP      G+EL D     G++ F
Sbjct: 79  ALQQQNVPYRMSPNGLSILVPQEQVHELRLRLAAAGLPRGGL-VGFELMD-TQKLGVSQF 136

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--S 183
            +++   RALEGE++RTIQSI+ + AARVH+ MP   +F +   +PTASVM+        
Sbjct: 137 NEQVNYQRALEGELSRTIQSIAAVAAARVHLAMPKQTAFLRDDQKPTASVMVTLRPGRVL 196

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHE 240
                  I HLV+++VP +    V ++D  G+LLT       +  +    L  V+ ++  
Sbjct: 197 DANQVAGIVHLVSSSVPRMVESGVNIIDQNGELLTTKNDPLRQTGLDATQLEYVKEVEAG 256

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK-DAQRSET 299
               I   L   +G +NFR+ V A+++ +  +     + P+   +++IR  +   + +  
Sbjct: 257 FIRRIENILQPMVGKNNFRAQVAADVDFNQVEQTAETFKPNPSPDQAIRSQQTTEETNRQ 316

Query: 300 SQPESAVTVEQNMPHVSDRKV---------PLPRSLENTDKKEEQSNYEINTKSIATTHD 350
             P+       N P V                  +   T  +    NYE++         
Sbjct: 317 PGPQGVPGALSNQPPVPATAPITTPPVGPNQAGAAQTGTTSRSAVLNYEVDRTIQHVKQS 376

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             +L+RLS+AVVVN    T   G++      D  +A IN +V  A G N  RGDTI + S
Sbjct: 377 LGQLKRLSVAVVVNHRTETLPNGQTQTVPLTDEEVARINNLVREAVGYNPARGDTINVAS 436

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F          V +     +          L+  +  L   F  +  L R       +
Sbjct: 437 SPFAGIGP--EPAVPLWKDPEMIELGKEGFKYLLVALAVLFAYFAIIRPLMRTVMPPPPE 494

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                      P           +                          +   +    R
Sbjct: 495 PEVAEAGEPGEPGFEGEEDVEVTLSGAA---------------------QANTYEAKLAR 533

Query: 531 LLHMIEINEERFAKILRKWARSEIEDRYT 559
              + + + +  A ++R+W     E R +
Sbjct: 534 ARELAKEDPKMVANLIREWMGLNEEGRKS 562


>gi|150395469|ref|YP_001325936.1| flagellar MS-ring protein [Sinorhizobium medicae WSM419]
 gi|150026984|gb|ABR59101.1| flagellar M-ring protein FliF [Sinorhizobium medicae WSM419]
          Length = 557

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 266/552 (48%), Positives = 356/552 (64%), Gaps = 4/552 (0%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+ +++ LA   +V I   + A  +VN P ++ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQGKLIALAVAGIVAIGFVLGAGVYVNRPSFETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANVDFEVGTDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVTVLDSTG+LL + +   N      L +VQ +Q 
Sbjct: 180 ATVGRSAAASIRHLVASSVPGLDVDDVTVLDSTGQLLASGDDPANSALNQSLGVVQNVQT 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTARLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  +       +S +   KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPTGGAGQQSSDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  + G  ADQ KID+YL ++ KIV++A GI+  RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMAGEPADQAKIDAYLVQMQKIVASAAGIDPGRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +        M++L+R+   +INAL F+    LV + G+  L R            G  + 
Sbjct: 420 DQAVPGPGMMEVLTRNIGGIINALAFVAVAFLVVWFGMRPLARQMGFGGQSGQLAGEAAG 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSH--SRNLQSRINSYVSKQSDLRLLHMIEI 537
           L  P  S A                  D      +   ++  N  V +  + RL  M+EI
Sbjct: 480 LELPDFSPAAAGAGGALMEGFGSDFGFDGGDDLLNLGDEAGFNRRVKEGPERRLARMVEI 539

Query: 538 NEERFAKILRKW 549
           +EER AKILRKW
Sbjct: 540 SEERAAKILRKW 551


>gi|161621189|ref|YP_001595075.1| flagellar MS-ring protein [Brucella canis ATCC 23365]
 gi|161338000|gb|ABX64304.1| flagellar M-ring protein FliF [Brucella canis ATCC 23365]
          Length = 580

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/561 (37%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMSAILYMSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|320325114|gb|EFW81183.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 594

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/587 (20%), Positives = 220/587 (37%), Gaps = 56/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSGTG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P           +                                      
Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G         + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                         +   V
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
           G + +  L    LR +       K +                  G + ND ++L      
Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLDGELSNDRVSLGGPQSI 555

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|220935138|ref|YP_002514037.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996448|gb|ACL73050.1| flagellar FliF M-ring protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 552

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/565 (21%), Positives = 224/565 (39%), Gaps = 28/565 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             +  L    +    L   R + L   +   + L  +   ++  P Y  LY  L   +  
Sbjct: 3   NSMAVLSNQVRGFGRLPMERQIGLIVALAAAVALVSSLFMWMTRPSYTVLYPNLAEQESG 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +++ AL   NI +R+     +++VP+  +  AR+ LA +GLP  ++  G+EL ++    G
Sbjct: 63  QVAEALGRHNIPYRLDSATGAVTVPARHLHDARLKLATEGLPR-ATGFGFELLEQDQGLG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            +  ++     RA+EGE+AR+I ++S + +ARVH+ +P    F +  ++P+ASV++    
Sbjct: 122 TSRLIENARYHRAIEGELARSIATLSSVESARVHLALPAQSVFVRDRSKPSASVLVNLYA 181

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236
                      I HLVA++VP+L+   VTV+D  G+LLT             + L   + 
Sbjct: 182 GRTLDESRIAGIVHLVASSVPDLEPERVTVVDQRGRLLTQPAGDVDGVMASTQQLDFTRR 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++      I   L   LG D  R+ V A+L+    +     +DP+  V RS ++S+D  R
Sbjct: 242 MEESYVRRIMDILTPILGADAVRAQVAADLDFSRIERTTEAFDPEFSVVRSEQISEDESR 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSL------ENTDKKEEQSNYEINTKSIATTHD 350
                         N P  +                  +  +    NYE++         
Sbjct: 302 GGGMM--GVPGALTNQPPEAGVIAEEGNGANGQAQVPGSSSRRTVRNYEVDRTVSHIREA 359

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              L RLSIAVVV+        G        +  +  I  +V  A G ++RRGD+I + +
Sbjct: 360 PGGLRRLSIAVVVDHKEERNEAGELERVPFTEQEMERITTLVREAVGFDARRGDSINVIN 419

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F   +          + +        +   ++ ++  +++    +  L +        
Sbjct: 420 ASFRPVEALELPPEPPIWQE---PWVVDLAKTILAVIMVIVLALTVVRPLLKGL------ 470

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             E G  +         A+  G +  + + L    Q   +    L         +     
Sbjct: 471 -AERGAAARREDQLGHLALPEGELGEEQLRLGQQPQVQGA----LPGPNTKKNYEDQLDS 525

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
              M+  + +R A++++ W  S+  
Sbjct: 526 ARGMVREDPKRVAQLMKTWIASDGA 550


>gi|289627784|ref|ZP_06460738.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651625|ref|ZP_06482968.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298487835|ref|ZP_07005875.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157560|gb|EFH98640.1| Flagellar M-ring protein fliF [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866444|gb|EGH01153.1| flagellar MS-ring protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330986489|gb|EGH84592.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331011063|gb|EGH91119.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 594

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/587 (20%), Positives = 219/587 (37%), Gaps = 56/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P           +                                      
Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G         + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                         +   V
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
           G + +  L    LR +       K +                  G + ND ++L      
Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|330876010|gb|EGH10159.1| flagellar MS-ring protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330967111|gb|EGH67371.1| flagellar MS-ring protein [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 594

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/587 (20%), Positives = 222/587 (37%), Gaps = 56/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPH-----------------------------------VSDRKVPLPRSLEN 328
                  N P                                          P       
Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                         +   V
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYTQPWFWD-------IVKQAV 495

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
           G + +  L    LR + N   + K +                  G + ND ++L      
Sbjct: 496 GVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|67641495|ref|ZP_00440272.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4]
 gi|121601133|ref|YP_994240.1| flagellar MS-ring protein [Burkholderia mallei SAVP1]
 gi|124383455|ref|YP_001028106.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10229]
 gi|126448962|ref|YP_001082916.1| flagellar MS-ring protein [Burkholderia mallei NCTC 10247]
 gi|161579508|ref|YP_104753.2| flagellar MS-ring protein [Burkholderia mallei ATCC 23344]
 gi|167004331|ref|ZP_02270091.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20]
 gi|254175223|ref|ZP_04881884.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399]
 gi|254201855|ref|ZP_04908219.1| flagellar M-ring protein FliF [Burkholderia mallei FMH]
 gi|254207184|ref|ZP_04913535.1| flagellar M-ring protein FliF [Burkholderia mallei JHU]
 gi|254359688|ref|ZP_04975959.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280]
 gi|121229943|gb|ABM52461.1| flagellar M-ring protein FliF [Burkholderia mallei SAVP1]
 gi|124291475|gb|ABN00744.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10229]
 gi|126241832|gb|ABO04925.1| flagellar M-ring protein FliF [Burkholderia mallei NCTC 10247]
 gi|147747749|gb|EDK54825.1| flagellar M-ring protein FliF [Burkholderia mallei FMH]
 gi|147752726|gb|EDK59792.1| flagellar M-ring protein FliF [Burkholderia mallei JHU]
 gi|148028902|gb|EDK86834.1| flagellar M-ring protein FliF [Burkholderia mallei 2002721280]
 gi|160696268|gb|EDP86238.1| flagellar M-ring protein FliF [Burkholderia mallei ATCC 10399]
 gi|238522438|gb|EEP85882.1| flagellar M-ring protein FliF [Burkholderia mallei GB8 horse 4]
 gi|243060331|gb|EES42517.1| flagellar M-ring protein FliF [Burkholderia mallei PRL-20]
          Length = 598

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/525 (24%), Positives = 216/525 (41%), Gaps = 21/525 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 81  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 140

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S + + AARV++ +P  
Sbjct: 141 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESSNAVRAARVYLAIPKP 198

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 199 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 258

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 259 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 318

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 319 PNGTPQQSAIRSQQTSSSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 378

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 379 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQV 438

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 439 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 498

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
             L       ALRR                     P       GL   D   L   +++ 
Sbjct: 499 AALYFMFVRPALRR---AFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEH 555

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +       R      +++      +   + +  A +++ W   E
Sbjct: 556 PALLAFENER---NRYERNLDYARTIARQDPKIVATVVKNWVSDE 597


>gi|62317964|ref|YP_223817.1| flagellar MS-ring protein [Brucella abortus bv. 1 str. 9-941]
 gi|68067522|sp|O52069|FLIF_BRUAB RecName: Full=Flagellar M-ring protein
 gi|62198157|gb|AAX76456.1| FliF, flagellar M-ring protein [Brucella abortus bv. 1 str. 9-941]
          Length = 580

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/561 (36%), Positives = 316/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E  D++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKMDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|28869162|ref|NP_791781.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213967561|ref|ZP_03395709.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1]
 gi|301385734|ref|ZP_07234152.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059423|ref|ZP_07250964.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato K40]
 gi|302134812|ref|ZP_07260802.1| flagellar MS-ring protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28852402|gb|AAO55476.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213927862|gb|EEB61409.1| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1]
          Length = 594

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/587 (20%), Positives = 222/587 (37%), Gaps = 56/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPH-----------------------------------VSDRKVPLPRSLEN 328
                  N P                                          P       
Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                         +   V
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
           G + +  L    LR + N   + K +                  G + ND ++L      
Sbjct: 496 GVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|315121860|ref|YP_004062349.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495262|gb|ADR51861.1| flagellar MS-ring protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 560

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 420/560 (75%), Positives = 480/560 (85%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI+DQLLQFFKS  SLGR R+ I+ +V+   I L +AA FF++SP YD+LYVKLE SDV
Sbjct: 1   MAIIDQLLQFFKSAMSLGRMRLFIVGAVMFASIALLLAASFFMSSPIYDSLYVKLEASDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+ISVALSEA+IDFRI+ NGSSI VPS ++ KAR+ LA QGLP+SS+NSGYELFDKVNSF
Sbjct: 61  NKISVALSEASIDFRIAGNGSSILVPSHLLSKARLRLAEQGLPNSSNNSGYELFDKVNSF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQEITRVRALEGEI+RTIQ ISGIVAARVHIVMPDMGSFR+IGA+PTASVM+R +
Sbjct: 121 GLTSFMQEITRVRALEGEISRTIQDISGIVAARVHIVMPDMGSFRRIGAKPTASVMVRVV 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           NPSVYKSAEAIRHLVAAAVP LD+ DVTVLDSTGKLL ANE+ERNI GKSL IVQA+QHE
Sbjct: 181 NPSVYKSAEAIRHLVAAAVPGLDISDVTVLDSTGKLLVANEIERNIFGKSLGIVQAVQHE 240

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IEMNINKALA FLG+DNFRSAV+AELN D QQI+EIVYDPDS+VERS+RLSKD QRSE+ 
Sbjct: 241 IEMNINKALAPFLGIDNFRSAVIAELNTDIQQIKEIVYDPDSRVERSVRLSKDVQRSESH 300

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           Q ESAVTVEQNMPHVS++    PR+LENTDKKEEQSNYEINTKSI+TTH+NYKLERLSIA
Sbjct: 301 QQESAVTVEQNMPHVSEKNATSPRALENTDKKEEQSNYEINTKSISTTHNNYKLERLSIA 360

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVNKGRL E+LG S +Q K+DSYLAEIN+IVSAATGINS RGD ITITSMDFL++QL N
Sbjct: 361 VVVNKGRLMEMLGPSMEQSKVDSYLAEINRIVSAATGINSIRGDNITITSMDFLDDQLLN 420

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           S TVQVSFMDILSR+F+ +INAL FL   LL+   G+H LR  +NID  K+ E+  KS L
Sbjct: 421 SSTVQVSFMDILSRNFSIIINALFFLTLVLLMALFGVHVLRGFNNIDLIKRKEMEAKSAL 480

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           S P I+S   T LM +D++A DS  QDI S + N QS IN+YV++QSD RLL MIEINEE
Sbjct: 481 STPSIASTAETTLMSSDDMASDSFRQDILSRNNNFQSDINNYVAEQSDRRLLRMIEINEE 540

Query: 541 RFAKILRKWARSEIEDRYTQ 560
           RF+KI+RKW RSEIE RYTQ
Sbjct: 541 RFSKIIRKWVRSEIESRYTQ 560


>gi|241203091|ref|YP_002974187.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240856981|gb|ACS54648.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 563

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 294/564 (52%), Positives = 393/564 (69%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGTSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +   N    +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT  +YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQTKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    LV ++GL  L R  + + +        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFLVVWMGLRPLVRSVSGNGSSAAFGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P S A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  E  
Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563


>gi|331017004|gb|EGH97060.1| flagellar MS-ring protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 594

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/587 (20%), Positives = 222/587 (37%), Gaps = 56/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGIDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPH-----------------------------------VSDRKVPLPRSLEN 328
                  N P                                          P       
Sbjct: 323 GVPGALSNQPPGPATAPQNAAAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                         +   V
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
           G + +  L    LR + N   + K +                  G + ND ++L      
Sbjct: 496 GVIFILILVFGVLRPVLNNITSGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|71734724|ref|YP_275541.1| flagellar MS-ring protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555277|gb|AAZ34488.1| flagellar M-ring protein FliF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 594

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/587 (20%), Positives = 219/587 (37%), Gaps = 56/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P           +                                      
Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G         + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                         +   V
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSIERAEVLPEASFYSQPWFWD-------IVKQAV 495

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
           G + +  L    LR +       K +                  G + ND ++L      
Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSI 555

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|170748099|ref|YP_001754359.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831]
 gi|170654621|gb|ACB23676.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM
           2831]
          Length = 546

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 194/560 (34%), Positives = 309/560 (55%), Gaps = 17/560 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   + L + + +   LG  R++ L  V L   +      ++++ P  + LY  L   DV
Sbjct: 1   MPGREHLQKLWTNILDLGPRRLIALGLVGLTVFLAVGLGAYYLSRPLRETLYSGLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +R+  AL +A I F IS +G+S+ V      +AR+ LA +GLP S   +GYELF+ + S 
Sbjct: 61  SRMGAALKDAGIPFDISADGTSVLVSYGQTAQARMLLAEKGLPQSG-KAGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ+ITRVRALEGEIARTIQ++  + AARVHIVMPD GSFR+     +ASV++R  
Sbjct: 120 GLTSFMQDITRVRALEGEIARTIQTLKSVKAARVHIVMPDPGSFRREQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
             +    A AIR LVAAA+P +    VTVL++ G +L A +         L+ + Q++  
Sbjct: 180 PANDATVAPAIRQLVAAAIPGMKPDKVTVLNTDGTVLLAGDDATTAPAGRLANLEQSVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI+ NI + L  +LG +NF  +VVA LN D  +  E +++PD KVERS+R  K++  S+ 
Sbjct: 240 EIQDNIRRTLTPYLGPNNFEVSVVARLNTDKTKTDETIFNPDQKVERSLRTIKESDSSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
             P+   T +QN+P    R      S   + ++EE +N+EI++K++ T  D Y ++ LS+
Sbjct: 300 RAPQKPTTAQQNLPDQRVRSEGAENSSAESQRREELTNFEISSKTVQTVSDGYSIKTLSV 359

Query: 360 AVVVNKGRLTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           AV+VN+ RL  + G +       +D  +AEI ++V++A G+N  RGD + + ++ F++  
Sbjct: 360 AVLVNRSRLEALAGGAKGGTAPPLDPQVAEIEQLVTSAAGVNRARGDQLKVAAVSFIDEG 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +    + F D+L R   T+INA   L+   L+ + GL       N   A+  E G +
Sbjct: 420 QPLAPAPALGFTDVLMRQSGTLINAATILIVGCLLIWFGLRPAV---NAILARPAETGTE 476

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             L+ P   S +             S+ +   S   +L   +  ++++    +L  ++E+
Sbjct: 477 LALATPDAGSGLDG----------PSAEKGGTSPEPSLIEDLTEHMARSPIRKLEQLVEL 526

Query: 538 NEERFAKILRKWARSEIEDR 557
           +EE+ A IL++W   E   R
Sbjct: 527 DEEQVANILKQWLTREEVAR 546


>gi|329901251|ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480]
 gi|327549183|gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480]
          Length = 564

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/567 (21%), Positives = 222/567 (39%), Gaps = 43/567 (7%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           S       R L+L     + I +      +   P Y  L+      D   I   L + N+
Sbjct: 16  SFAESQGGRNLLLMLGAAIVIAVMAGVWMWSQQPDYRVLFSNFTDRDGGAIVTQLQQMNV 75

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ ++ G +I VP+  V  AR+ +AA GLP    N G+EL  +    G++ F++++   
Sbjct: 76  PYKFAEGGGAILVPADQVHDARLRIAAMGLPK-GGNVGFELM-ENQKLGVSQFLEQVNFQ 133

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSAEA 190
           RALEGE+AR++QSI  + +ARVH+ MP    F +   +PTASV++          +   A
Sbjct: 134 RALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLNLNPGRSLSEQQVSA 193

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMNINK 247
           I HLVA++VP+L  G+++V+D  G LL+         G     L  +Q +Q  I   I  
Sbjct: 194 IVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQEVQQNIVRRIES 253

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--TSQPESA 305
            +   +G +N R+   A+++  T +     Y P+S   +S   S+ +  S+         
Sbjct: 254 IITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSSESQGSNPGAGGV 313

Query: 306 VTVEQNMPHVS------------------DRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
                N P  +                          +     +K+   NYE++      
Sbjct: 314 PGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVPSQKDMTVNYEVDKTVRYV 373

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 ++R+S+AVVVN  ++T+  G+       ++   +I  +V  A G N  RGDT+ 
Sbjct: 374 QQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEAMGFNKDRGDTLN 433

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F          V +     + +    +   L+  +  L + F  L  + +  N  
Sbjct: 434 VVNSAFAGVPKEVFPEVPIWKRPEMIQLAKELGKYLLGGIALLYLFFGVLRPMLKKFNTP 493

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
             K   V                        +  +S++                   +Q+
Sbjct: 494 QPKIRAVVDDEDDEAETPEMRAMHAAERTTEVPAESASMA----------------YQQN 537

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
                 + + + +  A I++ W     
Sbjct: 538 LDLAKQLAKDDPKVVANIVKNWVSGNE 564


>gi|167034925|ref|YP_001670156.1| flagellar MS-ring protein [Pseudomonas putida GB-1]
 gi|166861413|gb|ABY99820.1| flagellar M-ring protein FliF [Pseudomonas putida GB-1]
          Length = 592

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/584 (20%), Positives = 232/584 (39%), Gaps = 57/584 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L+ 
Sbjct: 27  FLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+  
Sbjct: 87  ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        +   
Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245
             AI +LVA +VP LD   VTV+D  G LL+    +      GK     + ++  +   +
Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSSLTQAGKQFDYSRRVESMLTQRV 266

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG D +++ V A+L+    +     ++PD    RS +   + + S +  P+  
Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325

Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331
                N P  +                                             +  +
Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPASAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINK 390
           ++   N+E++     T     ++ RLS+AVVV+     +   G +         LA   +
Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKLDPATGDATRAPWAAEDLARFTR 445

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V  A G ++ RGD++T+ ++ F  ++      +           F  ++  ++ +V  L
Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           ++ F  L  +         +       S             G + ND ++L      +  
Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----SDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                     S   +     +  ++  +  R A++++ W  ++ 
Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592


>gi|320329373|gb|EFW85366.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330880568|gb|EGH14717.1| flagellar MS-ring protein [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 594

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/587 (20%), Positives = 219/587 (37%), Gaps = 56/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P           +                                      
Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G         + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                         +   V
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAV 495

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
           G + +  L    LR +       K +                  G + ND ++L      
Sbjct: 496 GVIFILILVFGVLRPVLTNITTGKSKELAGFGGDAELGRMGGLDGELSNDRVSLGGPQSI 555

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 556 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|325918317|ref|ZP_08180454.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas vesicatoria ATCC 35937]
 gi|325535457|gb|EGD07316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas vesicatoria ATCC 35937]
          Length = 574

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/568 (20%), Positives = 231/568 (40%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F+I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPFKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ +    RS ++S     +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVS--DSSTSAT 312

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +       +  LV  V  L + F  +    R    
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A K +  G      P         ++  DN  +     D     +  ++ I    + +
Sbjct: 489 VTAVKDKERGAGNDGTPQS---ADVRMVNEDNDLMPGLEDDTAQIGQEKKTPIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +R+    ++ + +R A++++ W  SE
Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|148558201|ref|YP_001258009.1| flagellar MS-ring protein [Brucella ovis ATCC 25840]
 gi|148369486|gb|ABQ62358.1| flagellar M-ring protein FliF [Brucella ovis ATCC 25840]
          Length = 568

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 208/556 (37%), Positives = 317/556 (57%), Gaps = 4/556 (0%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR+ +A
Sbjct: 2   IEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLA 61

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GLTSFM
Sbjct: 62  LGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFM 120

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           QEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA      +
Sbjct: 121 QEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAE 180

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNI 245
           SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   ++ +I
Sbjct: 181 SAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSI 240

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++ ++A
Sbjct: 241 RKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNA 300

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIAVV+++
Sbjct: 301 TGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQ 360

Query: 366 GRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
            RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V
Sbjct: 361 ARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPV 420

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
              + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++     P
Sbjct: 421 SAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATP 480

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
                   +       +           +   S +   +   + LRL  MIE++EER A 
Sbjct: 481 NFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAA 539

Query: 545 ILRKWARSEIEDRYTQ 560
           +L++W       R   
Sbjct: 540 VLKQWIHETASGREAD 555


>gi|285018180|ref|YP_003375891.1| flagellar biosynthesis lipoprotein flif [Xanthomonas albilineans
           GPE PC73]
 gi|283473398|emb|CBA15903.1| probable flagellar biosynthesis lipoprotein flif [Xanthomonas
           albilineans]
          Length = 569

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/567 (21%), Positives = 227/567 (40%), Gaps = 29/567 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   +F    SL  TR + L ++I V +   +   F+   P Y  LY  L+       +
Sbjct: 13  EKAGAWFDRLQSLQITRRIGLMAMIAVAVAAGLFVFFWSQKPDYTPLYTGLDEKGTAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F++  +  +I+VP   +  AR+ LA  GL  SS N G+E+ +K   FG++ 
Sbjct: 73  DLLRTAQIPFKLDPSTGAITVPQEKLYDARLKLAGSGLTDSSGNMGFEVMEKDPGFGVSQ 132

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182
           F++      ALE E+ARTI S+  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 133 FVENARYQHALETELARTIASLRPVREARVHLAIPKPSAFTRQREAASASVVLELRGGNT 192

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI ++VA+++P+L    VTV+D +G++LT  +   +          ++  +  
Sbjct: 193 LERNQVDAIVNMVASSIPDLSPNRVTVVDQSGRMLTIADPNSDAALNAAQFDQIRRQESS 252

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ D    RS ++S     +   
Sbjct: 253 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGDPPKLRSEQVS--DSNTSKG 310

Query: 301 QPESAVTVEQNMPHVSDRKV-------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
            P+       N P  +                     +      K    NYE++     T
Sbjct: 311 GPQGVPGATSNSPGATPTGQPAAAGTPAAAAGANQQAANPTESSKSATRNYELDRTLQHT 370

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +++R+S+AV+V+        G+  +Q    + L  I  +V  A G N+ RGDT++
Sbjct: 371 RQPAGRIKRVSVAVLVDHVPRPGPKGKMVEQALSAAELTRIEGLVKQAVGFNAERGDTVS 430

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F+      +                + +  ++     L + F  L    R     
Sbjct: 431 VMNAPFVHEATETTDKPSWWQDPR----VMSGLRMVLGAAVVLALLFGVLRPALRQIAGP 486

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
               G     +              ++ + N  L S  +D  S + +    I    + + 
Sbjct: 487 APAAGAKDKDNATPHDAKL-----SMLEDGNPMLQSLGEDTASIAGSGNPAIALPDAYEE 541

Query: 528 DLRL-LHMIEINEERFAKILRKWARSE 553
            LRL    ++ + +R A++++ W  SE
Sbjct: 542 RLRLAREAVKQDSKRVAQVVKGWVASE 568


>gi|148546737|ref|YP_001266839.1| flagellar MS-ring protein [Pseudomonas putida F1]
 gi|148510795|gb|ABQ77655.1| flagellar M-ring protein FliF [Pseudomonas putida F1]
          Length = 592

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 57/584 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L+ 
Sbjct: 27  FLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+  
Sbjct: 87  ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        +   
Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245
             AI +LVA +VP LD   VTV+D  G LL+    +      GK     + ++  +   +
Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRV 266

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG D +++ V A+L+    +     ++PD    RS +   + + S +  P+  
Sbjct: 267 HNILLPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325

Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331
                N P  +                                             +  +
Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINK 390
           ++   N+E++     T     ++ RLS+AVVV+    +    G +         LA   +
Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARFTR 445

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V  A G ++ RGD++T+ ++ F  ++      +           F  ++  ++ +V  L
Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           ++ F  L  +         +                     G + ND ++L      +  
Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----PDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                     S   +     +  ++  +  R A++++ W  ++ 
Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592


>gi|306845426|ref|ZP_07478000.1| flagellar M-ring protein FliF [Brucella sp. BO1]
 gi|306274169|gb|EFM55985.1| flagellar M-ring protein FliF [Brucella sp. BO1]
          Length = 575

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/561 (36%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 4   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA+I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEADIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEIT VRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITHVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALITASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNANRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 423 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 482

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 483 EVAMPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 541

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 542 ERVAAVLKQWIHETASGREAD 562


>gi|313497796|gb|ADR59162.1| FliF [Pseudomonas putida BIRD-1]
          Length = 592

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 57/584 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L+ 
Sbjct: 27  FLENISQMPMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+  
Sbjct: 87  ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETT 146

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        +   
Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245
             AI +LVA +VP LD   VTV+D  G LL+    +      GK     + ++  +   +
Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRV 266

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG D +++ V A+L+    +     ++PD    RS +   + + S +  P+  
Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325

Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331
                N P  +                                             +  +
Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINK 390
           ++   N+E++     T     ++ RLS+AVVV+    +    G +         LA   +
Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMTRLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARFTR 445

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V  A G ++ RGD++T+ ++ F  ++      +           F  ++  ++ +V  L
Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           ++ F  L  +         +                     G + ND ++L      +  
Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----PDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                     S   +     +  ++  +  R A++++ W  ++ 
Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592


>gi|161610775|ref|NP_946615.2| flagellar MS-ring protein [Rhodopseudomonas palustris CGA009]
          Length = 538

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/551 (24%), Positives = 233/551 (42%), Gaps = 21/551 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V +  +  F      V+ P    LY  L V D + I   
Sbjct: 1   MQNLLGFLKGLGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + ++G+ + VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQGIPFEMRNDGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244
              AIRHLVA+AV  L    V+++D  G+LL              S     A +  +   
Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQ 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++   + TS  + 
Sbjct: 240 IEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SAATSAADG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VTV   +P  +  +     + + + K EE +NYEI+  +     +  ++ RLS+AV+V+
Sbjct: 298 QVTVNNELPGAN--QGQGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G      +    L  I  +V +A G + +RGD I + ++ F E         
Sbjct: 356 GAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPE 415

Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                            +I   V  +  L+V F+ +  L +     +      GG   L+
Sbjct: 416 PAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRILAAEPAPEAAGGLPALA 475

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
              +             I  D         S    +++   V  QS  R+  + E N   
Sbjct: 476 DGTVP-----------QIGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNE 524

Query: 542 FAKILRKWARS 552
            A I+R+W   
Sbjct: 525 TAAIIRQWLAE 535


>gi|104782821|ref|YP_609319.1| flagellar MS-ring protein [Pseudomonas entomophila L48]
 gi|95111808|emb|CAK16532.1| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila
           L48]
          Length = 592

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/584 (20%), Positives = 236/584 (40%), Gaps = 57/584 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L+ 
Sbjct: 27  FLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLAS 86

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+  
Sbjct: 87  ADIPYHVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMETT 146

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        +   
Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245
             AI +LVA +VP LD   VTV+D  G LL+    +   ++ GK     + ++  +   +
Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALSMAGKQFDYSRRMEGLLTQRV 266

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG D +++ V A+++    +     ++PD    RS +   + + S +  P+  
Sbjct: 267 HNILQPVLGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSVNEQRAS-SQGPQGV 325

Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331
                N P          R+                                    +  +
Sbjct: 326 PGALSNQPPAGASAPENARAAATPAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINK 390
           ++   N+E++     T     +L RLS+AVVV+     +   G +         LA   +
Sbjct: 386 QQSTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKLDAASGEATRTPWGAEDLARFTR 445

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V  A G ++ RGD++T+ ++ F  ++      +           F  ++  ++ ++  L
Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGDELVDIPF----YSQPWFWDIVKQVLGVLFIL 501

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           ++ F  L  +         +       +             G + ND ++L      +  
Sbjct: 502 VLVFGVLRPVLTNITGGGKQAA-----TDSDMELGGMIGLDGELANDRVSLGGPTSILLP 556

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                     S   +     +  ++  +  R A+++++W  ++ 
Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKEWINADE 592


>gi|122065185|sp|Q8YDM4|FLIF_BRUME RecName: Full=Flagellar M-ring protein
          Length = 580

 Score =  376 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/561 (36%), Positives = 317/561 (56%), Gaps = 4/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL++   
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 546

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 547 ERVAAVLKQWIHETASGREAD 567


>gi|192289867|ref|YP_001990472.1| flagellar MS-ring protein [Rhodopseudomonas palustris TIE-1]
 gi|192283616|gb|ACE99996.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris TIE-1]
          Length = 538

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 137/551 (24%), Positives = 233/551 (42%), Gaps = 21/551 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V +  +  F      V+ P    LY  L V D + I   
Sbjct: 1   MQNLLGFLKGLGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + ++G+ + VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQGIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244
              AIRHLVA+AV  L    V+++D  G+LL              S     A +  +   
Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQ 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++   + TS  + 
Sbjct: 240 IEGIVSSVVGSGRARVQVSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SAATSAADG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VTV   +P  +  +     + + + K EE +NYEI+  +     +  ++ RLS+AV+V+
Sbjct: 298 QVTVNNELPGAN--QGQGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G      +    L  I  +V +A G + +RGD I + ++ F E         
Sbjct: 356 GAYTKNDKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPE 415

Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                            +I   V  +  L+V F+ +  L +     +      GG   L+
Sbjct: 416 PAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRILAAEPAPEAAGGLPALA 475

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
              +             I  D         S    +++   V  QS  R+  + E N   
Sbjct: 476 DGTVP-----------QIGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNE 524

Query: 542 FAKILRKWARS 552
            A I+R+W   
Sbjct: 525 TAAIIRQWLAE 535


>gi|26991058|ref|NP_746483.1| flagellar MS-ring protein [Pseudomonas putida KT2440]
 gi|24986091|gb|AAN69947.1|AE016633_5 flagellar basal-body M-ring protein FliF [Pseudomonas putida
           KT2440]
          Length = 592

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/584 (20%), Positives = 231/584 (39%), Gaps = 57/584 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L+ 
Sbjct: 27  FLENISQMPMLRQIGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+  
Sbjct: 87  ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        +   
Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEAGQ 206

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNI 245
             AI +LVA +VP LD   VTV+D  G LL+    +      GK     + ++  +   +
Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRV 266

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG D +++ V A+L+    +     ++PD    RS +   + + S +  P+  
Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGV 325

Query: 306 VTVEQNMPHVSDRKVPLPRSL----------------------------------ENTDK 331
                N P  +                                             +  +
Sbjct: 326 PGALSNQPPGAASAPQTTGGAATPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKR 385

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINK 390
           ++   N+E++     T     ++ RLS+AVVV+    +    G +         LA   +
Sbjct: 386 QQSTKNFELDRSISHTRQQQGRMARLSVAVVVDDQVKIDPATGDTTRAPWGAEDLARFTR 445

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V  A G ++ RGD++T+ ++ F  ++      +           F  ++  ++ +V  L
Sbjct: 446 LVQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFIL 501

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           ++ F  L  +         +                     G + ND ++L      +  
Sbjct: 502 VLVFGVLRPVLNNITGGGKQAA-----PDSDMELGGMMGLDGELANDRVSLGGPTSILLP 556

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                     S   +     +  ++  +  R A++++ W  ++ 
Sbjct: 557 SP--------SEGYEAQLNAIKGLVAEDPGRVAQVVKDWINADE 592


>gi|209884352|ref|YP_002288208.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5]
 gi|209872548|gb|ACI92344.1| flagellar M-ring protein FliF [Oligotropha carboxidovorans OM5]
          Length = 537

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/551 (22%), Positives = 226/551 (41%), Gaps = 22/551 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +        SLG  R+  + +V +  +  F      V +P    LY  L   D   +   
Sbjct: 1   MQGLVSFIRSLGAARLAAMLAVAMALLGFFGFVILRVTAPQMITLYTDLGYDDAAGVIKE 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I + + ++G+ I VP   V + R+ LA  GLP   S  GYE+FDK  + G TSF+
Sbjct: 61  LDRQGIPYEMKNDGAIIMVPKDKVTRLRMKLAESGLPK-GSGVGYEIFDKSETLGSTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q +  +RALEGE+ARTI++I  I   RVH+V+P+   F +    P+A++++R       +
Sbjct: 120 QNVNHLRALEGELARTIKAIDRIQGVRVHLVLPERPLFSREKPEPSAAIVVRVRGALEAQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244
              AIRHLVA++V  L    V+++D  G+LL     +        +     A ++ +   
Sbjct: 180 QVRAIRHLVASSVNGLKPQRVSIVDENGQLLADGSGDANGMGDVGADERRVAYENRLRKQ 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   + + +G    R  + A+ + +        +DP+ +V RS +  +++  +       
Sbjct: 240 IESIVTSVVGGGRARVQLSADFDYNKVTETSDKFDPEGRVLRSSQTREESSATSNGLNGQ 299

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 N    + ++       +   K EE +NYEI+  +     +  +++R+S+AV+V+
Sbjct: 300 V--TVNNEMPGNQQQNAANAGKDQAKKSEEINNYEISRTTKTEVTEAGRVQRMSVAVLVD 357

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G      +    L  I  +V +A G +  RGD + + ++ F +         
Sbjct: 358 GVYSRNEKGDQVYAPRSQEDLERIATLVRSAIGFDKARGDQVEVVNLRFADAPSAIPLPD 417

Query: 425 QVSF---MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              +              I   V  + +++V F+ +  L +    +D            +
Sbjct: 418 SNGWLSVFQFTKDDVMYFIELGVMSLLSIVVVFMVVRPLVKRVLAEDVPLANAAPALPEA 477

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
           P P              +A+        +      +++   V  QS  R+  + + N   
Sbjct: 478 PQP--------------VAVAGPVHTAATAQMIDVAQVQGQVHAQSVHRVGELADRNPNE 523

Query: 542 FAKILRKWARS 552
              I+R+W   
Sbjct: 524 TVAIIRQWLTE 534


>gi|227820842|ref|YP_002824812.1| flagellar MS-ring protein [Sinorhizobium fredii NGR234]
 gi|227339841|gb|ACP24059.1| flagellar M-ring protein FliF [Sinorhizobium fredii NGR234]
          Length = 559

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 268/554 (48%), Positives = 365/554 (65%), Gaps = 6/554 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + DQ   F K+ ++LG+++++ LA   +V I   + A  +VN P Y+ LYV LE SDV
Sbjct: 1   MNLFDQFSTFTKNLSNLGQSKLIALAVAGIVAIGFVLGAAIYVNKPAYETLYVGLERSDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+AL+EAN+DF +  +G SI VP  M GKAR+ LA +GLP SS+N+GYELFD V S 
Sbjct: 61  TQISIALAEANLDFEVGSDGGSIQVPVGMTGKARLLLAERGLP-SSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ ISGI AARVHIVMP+ GSFRK    PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQQISGIAAARVHIVMPERGSFRKAEQTPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQH 239
                 +A +IRHLVA++VP LD+ DVT+LDSTG+LL + +   N      L +VQ +Q 
Sbjct: 180 ATVGRGAASSIRHLVASSVPGLDIDDVTILDSTGQLLASGDDPANSALNQSLGVVQNVQT 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           ++E  I+ ALA FLG+DNFR++V A LN D QQI+E V+DP+S+VERS R+ K+ Q+S  
Sbjct: 240 DLEKKIDNALAPFLGMDNFRTSVTASLNTDAQQIQETVFDPESRVERSTRVIKEEQKSSQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            QP++A TV+QN+P  + R     +S +   KKEEQ+NYEIN+K+IAT  ++Y +ERLSI
Sbjct: 300 QQPDNAATVQQNVPQAAPRGGAGQQSNDEAAKKEEQTNYEINSKTIATVKNSYSIERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN+GRL  ++G  ADQ KID+YL ++ KIV++A G+++ RGD +T+ +MDF+E QL 
Sbjct: 360 AVVVNRGRLAAMVGEGADQAKIDAYLQDMQKIVASAAGVDTNRGDVVTLNAMDFVETQLL 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +        M++L+R+   +IN+L F++   LV +LG+  L R            G  + 
Sbjct: 420 DQAVAGPGVMEMLTRNLGGIINSLAFILVAFLVVWLGMRPLARQMGFGGQSGHLEGEGAG 479

Query: 480 LSPPPISS----AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           L  P  S     A    LM          + D   +  +  +  N  V +  + RL  M+
Sbjct: 480 LELPDFSPAGASAAGGALMEGFGSDFGFDSTDDLLNISDEGNGFNRRVKEGPERRLARMV 539

Query: 536 EINEERFAKILRKW 549
           EI+EER AKILRKW
Sbjct: 540 EISEERAAKILRKW 553


>gi|182679604|ref|YP_001833750.1| flagellar MS-ring protein [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635487|gb|ACB96261.1| flagellar M-ring protein FliF [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 547

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 195/556 (35%), Positives = 308/556 (55%), Gaps = 11/556 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + +Q+ + + +   LG  R++ LA V +    +   A +F++ P  + LY  L+  DV
Sbjct: 1   MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI+ AL EA+I F ++ +G+S+ V      +AR+ LA +GLP +S N+G ELFDK+ S 
Sbjct: 61  SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIVMPD GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRME 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
           +     +A+AIRHLVA+AVP + + +VTVL++ G LL +  +         + + +A+  
Sbjct: 180 SNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI K L  +LG+ NF+ +V A LN D +Q  E +Y+PDSKVERSI +++  Q S+ 
Sbjct: 240 EIIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S  +S  +VE+N+P  + R     +S E + K++E +NYEI++K + T    Y ++ LS+
Sbjct: 300 STVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+  L   LG       +   + EI  +V++A G +  RGD + I+++DF++    
Sbjct: 360 AVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSHE 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                  S  ++  R    ++NA   LV  +L+ + GL           A K  +     
Sbjct: 420 LEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRP---------ATKAILANTRS 470

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +               D+ A  +          NL   + S        RL  ++E +E
Sbjct: 471 TATAIDLRDEEEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDE 530

Query: 540 ERFAKILRKWARSEIE 555
           ++ A +L++W     E
Sbjct: 531 QQAAAVLKQWIHQGEE 546


>gi|330972435|gb|EGH72501.1| flagellar MS-ring protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 594

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/586 (20%), Positives = 222/586 (37%), Gaps = 56/586 (9%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+ 
Sbjct: 85  AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186
               R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++           
Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244
              AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +   
Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQR 264

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S    
Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329
                 N P                                                   
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388
            + +   N+E++     T     +L RLS+AVVV+    T    G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ ++ F   +                  F  ++   V ++ 
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +         K+    G               G + ND ++L      +
Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       +         +  ++  +  R A+++++W  ++ 
Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|115522990|ref|YP_779901.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53]
 gi|115516937|gb|ABJ04921.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53]
          Length = 535

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/551 (24%), Positives = 229/551 (41%), Gaps = 23/551 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V    I  F      V +P    L+  L V D + I   
Sbjct: 1   MEGLVNFLKGLGAARLMAMIAVTAALIGFFAFVILRVTTPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA  GLP      GYE+FDK  + G TSF+
Sbjct: 61  LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEAGLPKGGG-VGYEIFDKSEALGSTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMN 244
              AIRH+VA+AV  L    V+++D  G+LL                    A +  +   
Sbjct: 180 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPSTEGVTGDERRAAFEKRMRNQ 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   +++ +G    R  + A+ + +        +DP+ +       S++   +  +  + 
Sbjct: 240 VEAIVSSVVGTGRARVQLTADFDYNKITQTSDKFDPEGR-VLRSSQSREESSATLNPTDG 298

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VTV   +P          R  + + K EE +NYEI+  +     +  ++ R+S+AV+V+
Sbjct: 299 QVTVNNELPGAQGGAGAAAR--DQSKKSEETNNYEISRVTKTEVTEVGRVNRVSVAVLVD 356

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ---LFNS 421
                   G    Q +    L  I  +V +A G + +RGD + I ++ F E       N 
Sbjct: 357 GLYNKNDKGELVYQERSKEELDRIAALVRSAIGFDQKRGDQVEIVNLRFAEGPAVVPINE 416

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            T  +  +         VI   V ++  ++V F+ +  L R     +             
Sbjct: 417 PTGILGMLKFTKDDVMYVIELGVMMLLGMVVIFMVIRPLVRRILAAEPGSPTALPALTDG 476

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                           ++  D         S    +++   V  QS  R+  + + N   
Sbjct: 477 TV--------------SVGADGQPLPTPGPSMIDIAQVQGQVHAQSVHRVGELADRNPNE 522

Query: 542 FAKILRKWARS 552
            A I+R+W + 
Sbjct: 523 TAAIIRQWLQE 533


>gi|254785458|ref|YP_003072887.1| flagellar MS-ring protein [Teredinibacter turnerae T7901]
 gi|237683992|gb|ACR11256.1| flagellar M-ring protein FliF [Teredinibacter turnerae T7901]
          Length = 558

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/561 (20%), Positives = 225/561 (40%), Gaps = 25/561 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +      +   +L   R   L   +   + +  A   +     Y  LY  L+  D   + 
Sbjct: 11  NPAGDLIEGFNNLNLIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSAEVG 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L   +I ++I  +  ++ VP   + KARI LA  G+       G+EL D+    G + 
Sbjct: 71  QVLDFNDIPYKIDGSTGALLVPVDKLQKARILLAENGI-QGDKTIGFELLDQEQPLGTSQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS- 183
           FM+     R+LEGE+ARTI SI+ + +ARVH+ +P    F + G  P+ASV +       
Sbjct: 130 FMEATRYRRSLEGELARTIASINSVRSARVHLAIPKRSVFVRDGREPSASVFLDLYPGRP 189

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQAIQHE 240
              K    I +LVAA++P LD  +VT++D  G L+     + +     + L   + ++ +
Sbjct: 190 IKPKQIAGIANLVAASIPELDSTNVTIVDQKGNLMEVAPEDEKLAQASQHLDYTRKVEDD 249

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           I + I + L   +G  NF++ V A+L+    +     ++PD    RS + S++ +     
Sbjct: 250 IVLRIRRLLTPIIGDANFKTEVAADLDFTEMEQAAETFNPDLPAIRSEQTSEEQRIGAGG 309

Query: 301 QPESAVTVEQNMPHVSDRK-------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                  +    P                 ++     +     NYE++     T H   +
Sbjct: 310 PGGIPGALTNQPPADGAAPEVAVPGGGGDGQTPPQQSQSRATRNYELDRTVSYTKHQKGR 369

Query: 354 LERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           L RL++AVVV+         G +      ++ L  +  +V  A G ++ RGD++ + +  
Sbjct: 370 LRRLTVAVVVDDKVQRNAETGEATRVPWTEAELERLAILVRDAVGFSAARGDSVNVLNEP 429

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F+    F+SG + +   D     F ++   L   +  + +    +  + +      AK  
Sbjct: 430 FVAQLDFDSGDLPIWKED----WFLSLAKQLAGFLIIVALILGLMRPVLKSLAGAGAKTK 485

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                  L     +   +   + ++ + L   +                   +Q    + 
Sbjct: 486 AEEEAKELEALQAAGIDSFDSLSDETVTLTGGDALALPSPEET--------YEQQLNAVK 537

Query: 533 HMIEINEERFAKILRKWARSE 553
            ++  +  R A+++++W   E
Sbjct: 538 GLVAEDPGRVAQVIKRWINEE 558


>gi|170722857|ref|YP_001750545.1| flagellar MS-ring protein [Pseudomonas putida W619]
 gi|169760860|gb|ACA74176.1| flagellar M-ring protein FliF [Pseudomonas putida W619]
          Length = 592

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/583 (20%), Positives = 233/583 (39%), Gaps = 55/583 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L+ 
Sbjct: 27  FLENISQMPMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDTKQVMDTLAA 86

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A+I + +  N  ++ V +  + +AR+ LAA G+  S  N G+EL DK    G + FM+  
Sbjct: 87  ADIPYNVEPNSGALLVKADDLSRARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R+LEGE+ART+ S++ + AARVH+ +P    F +   +P+ASV++        +   
Sbjct: 147 RYRRSLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDERKPSASVLVELYPGRSLEAGQ 206

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNI 245
             AI +LVA +VP LD   VTV+D  G LL+    +    + GK     + ++  +   +
Sbjct: 207 VMAIVNLVATSVPELDKSQVTVVDQKGNLLSDQLQDTALTMAGKQFDYSRRMEGMLTQRV 266

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG D +++ V A+L+    +     ++PD    RS +   + + S +  P+  
Sbjct: 267 HNILQPVLGNDRYKAEVSADLDFSAVESTSEQFNPDQPALRSEQSVNEQRASSS-GPQGV 325

Query: 306 VTVEQNMPH----------------------------------VSDRKVPLPRSLENTDK 331
                N P                                         P+        +
Sbjct: 326 PGALSNQPPAGAAAPENATAAAPAAGAIQPGQPLVDANGQQIMDPATGQPMLAPYPADKR 385

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391
            +   N+E++     T     +L RLS+AVVV+     +  G +         LA   ++
Sbjct: 386 LQTTKNFELDRSISHTRQQQGRLTRLSVAVVVDDQVKVDAAGETTRAPWGAEDLARFTRL 445

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
           V  A G ++ RGD++T+ ++ F  ++      +           F  ++  ++ +V  L+
Sbjct: 446 VQDAVGFDASRGDSVTVINVPFAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFILV 501

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
           + F  L  +         +         L           G + ND ++L      +   
Sbjct: 502 LVFGVLRPVLNNITGGGKQAAATDSDMELGGMIG----LDGELANDRVSLGGPTSILLPS 557

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                    S   +     +  ++  +  R A+++++W  ++ 
Sbjct: 558 P--------SEGYEAQLNAIKGLVAEDPGRVAQVVKEWINADE 592


>gi|316935488|ref|YP_004110470.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1]
 gi|315603202|gb|ADU45737.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris DX-1]
          Length = 537

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/551 (24%), Positives = 231/551 (41%), Gaps = 22/551 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V +  +  F      V+ P    LY  L V D + I   
Sbjct: 1   MQNLLSFLKGLGAARLMAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + + G+ + VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQGIPFEMRNEGAILLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE++RTI++I  + AARVH+V+P    F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPARPLFSREAPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMN 244
              AIRHLVA+AV  L    V+++D  G+LL         +    S     A +  +   
Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGSASGEQMEGATSDERRAAFEKRMRHQ 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++   + TS  + 
Sbjct: 240 IEGIVSSVVGSGRARVQVSADFDYNKITQTSDTFDPEGRVLRSSQTREE--SAATSAADG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VTV   +P  +  +     + + + K EE +NYEI+  +     +  ++ RLS+AV+V+
Sbjct: 298 QVTVNNELPGAN--QGQGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                +  G      +    L  I  +V +A G + +RGD I + ++ F E         
Sbjct: 356 GAYTKDDKGELVYAERSKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQIEKLPE 415

Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                            +I   V  +  L+V F+ +  L +     +      G  ++  
Sbjct: 416 PAGLMGMFQFTKDDIMNMIQLGVMFLLGLVVLFMVIRPLVKRVLAAEQTPEAAGLPALAD 475

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                  V    +                 S    +++   V  QS  R+  + E N   
Sbjct: 476 GTVPQIGVDGQPVAPG------------MPSMIDIAQVQGQVHAQSVHRVGELAERNPNE 523

Query: 542 FAKILRKWARS 552
            A I+R+W   
Sbjct: 524 TAAIVRQWLAE 534


>gi|66046686|ref|YP_236527.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae B728a]
 gi|63257393|gb|AAY38489.1| Flagellar FliF M-ring protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 594

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/586 (20%), Positives = 222/586 (37%), Gaps = 56/586 (9%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+ 
Sbjct: 85  AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186
               R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++           
Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244
              AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +   
Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQR 264

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S    
Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329
                 N P                                                   
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388
            + +   N+E++     T     +L RLS+AVVV+    T    G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ ++ F   +                  F  ++   V ++ 
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +         K+    G               G + ND ++L      +
Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       +         +  ++  +  R A+++++W  ++ 
Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|330953748|gb|EGH54008.1| flagellar MS-ring protein [Pseudomonas syringae Cit 7]
          Length = 594

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/586 (20%), Positives = 222/586 (37%), Gaps = 56/586 (9%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+ 
Sbjct: 85  AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186
               R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++           
Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244
              AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +   
Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQR 264

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S    
Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329
                 N P                                                   
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPGTGQPALAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388
            + +   N+E++     T     +L RLS+AVVV+    T    G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ ++ F   +                  F  ++   V ++ 
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +         K+    G               G + ND ++L      +
Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       +         +  ++  +  R A+++++W  ++ 
Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|58760481|gb|AAW82147.1| FliF [Stenotrophomonas maltophilia]
          Length = 545

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/553 (20%), Positives = 222/553 (40%), Gaps = 24/553 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V ++       +   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAVVSVFF---WSQKPGMVPLYTGLDQKATAEAT 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 70  DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 129 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI H+VAA++P+L    VTV+D +G++L+  +              V+  +  
Sbjct: 189 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 248

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S+    + T 
Sbjct: 249 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NTTSTP 306

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P          ++   + K     NYE++     T     +++R+S+A
Sbjct: 307 GPQGVPGATSNSPPGQQAAPATAQTPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 365

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ + Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 366 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 425

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                    L+  V  L + F  L    R     + K  E       
Sbjct: 426 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNRKNDE------- 473

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
            P          L+ +D + L +   D  S +      +     ++        ++ + +
Sbjct: 474 -PALEPHTADVQLVDDDGMPLPALGADRASLAGPDALALPVDSYEERLRMAREAVKTDSK 532

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 533 RVAQVVKGWVAND 545


>gi|291617848|ref|YP_003520590.1| FliF [Pantoea ananatis LMG 20103]
 gi|291152878|gb|ADD77462.1| FliF [Pantoea ananatis LMG 20103]
          Length = 572

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/548 (24%), Positives = 229/548 (41%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P+Y  L+  L   D   I   L++ N+ +R +DNG ++ VP   V + R+ LA Q
Sbjct: 47  LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL DK   FG++ F +++   RALEGE+ARTI+S+  +  ARVH+ MP 
Sbjct: 107 GLPK-GGNVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +             +AI H+V+++V  L  G+VTV+D +G LLT
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224

Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  +  
Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSL-------- 326
           Y P+   + +   S+    SE S    P        N P  ++       +         
Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344

Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                                   ++++  NYE++     T  +   ++RLS+AVVVN  
Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                  +       +  L +I  +   A G + +RGD++ + +  F   +   S     
Sbjct: 405 ----EDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTEPTVSELP-- 458

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                    F  +I+A  +L+  L+   L    +R         +            P  
Sbjct: 459 --FWQQQSFFDQLISAGKWLLVALVAFILYRKTVRPHVLRKKEAE---ESGCRSDGCPCC 513

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +A  +G +         + Q      R   +R+++ V  Q   R+  M E +    A ++
Sbjct: 514 TAKRSGSLQ------RPAQQREMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564

Query: 547 RKWARSEI 554
           R+W  +E+
Sbjct: 565 REWMGNEL 572


>gi|78485783|ref|YP_391708.1| flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2]
 gi|78364069|gb|ABB42034.1| Flagellar M-ring protein FliF [Thiomicrospira crunogena XCL-2]
          Length = 561

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/553 (22%), Positives = 241/553 (43%), Gaps = 25/553 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             K+ TSL   + + L   +   + L +    +  S  Y  L+  ++  D+N +   L +
Sbjct: 22  LLKNLTSLSVAKQVSLVIALAASVALAIGIILWSQSASYTLLFGSMDAKDMNEVIQTLDQ 81

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++I  N  +I VP+  V   R+ LAAQG P   + +GY++ D    FG++ F +  
Sbjct: 82  ENVPYKIEQNSGAILVPNEQVHSLRLKLAAQGYPKQ-APTGYQILDIDQGFGISQFKETT 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187
              RALEGE+A+++ SI+ + +ARV + MP    F +    PTASV ++         + 
Sbjct: 141 RYQRALEGELAKSVSSINAVKSARVMLGMPKRSVFVRKQQEPTASVTVKLYPGRALNEEQ 200

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNI 245
             AI +LV++++PN+    VTV+D  G LLT++     +    K L   + ++  +   I
Sbjct: 201 VSAIVYLVSSSIPNMKPKGVTVVDQQGNLLTSDSHSGIMNVSLKQLGYTRQVEDTLSQRI 260

Query: 246 NKALAAFLGVD-NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
            + L    G D   R+ V AEL+   Q+     Y+PD +  RS +  K+  R+E   P  
Sbjct: 261 IRLLTPVAGGDHKVRAQVTAELDFTQQEQTRENYEPDPEAIRSEQEIKEINRNE--GPMG 318

Query: 305 AVTVEQNMPHVSDRKV-----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P  +         P         K+++  NYE++       +    + RLS+
Sbjct: 319 IPGALTNQPPRAGIAPEEGYKPENDPNLKNSKEKKTKNYELDRTVSHIKNSVGSIRRLSV 378

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV++     +  G +      +  L    ++VS A G++  RGDT++I +  F++ +  
Sbjct: 379 AVVLDDKLTVDDNGDTVRTPLTEDELQRYRRLVSDAVGLDEARGDTLSIVNASFIQEKQE 438

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +    ++         F T++  ++  +  L++ F  +  + +  +  +           
Sbjct: 439 DFAGPEIWEEP----WFWTLVKQILAGLAVLIIIFGVIRPMLKDLSKREEVA-------- 486

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           +  P         L   D I+      +     +  +   +S   K+   ++  ++  + 
Sbjct: 487 MDYPEDVPEEEEELENADEISRALEQMNEEVEQKAEEVDEDSEKDKEMLEKVKAVVSADP 546

Query: 540 ERFAKILRKWARS 552
           +  A I+++W   
Sbjct: 547 KLAAHIIKQWMSK 559


>gi|154252631|ref|YP_001413455.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1]
 gi|154156581|gb|ABS63798.1| flagellar M-ring protein FliF [Parvibaculum lavamentivorans DS-1]
          Length = 552

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/555 (23%), Positives = 241/555 (43%), Gaps = 14/555 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +        SLG  R+  L  V +     F      + +     L+  + V D  ++   
Sbjct: 1   MSNVSNLLQSLGTMRLAALGLVAIALFSFFAFIALRMGNEPKALLFSDVGVEDAAKMIAE 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A + + +  NG  I VP + V + R+ LA +GLP +    GYE+FD  ++ G TSF+
Sbjct: 61  LDAAKVSYELRGNGGMIYVPQADVLRLRMMLAGKGLP-AGGTVGYEIFDNADALGTTSFL 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY 185
           Q I  +RALEGE+ARTI++I GI  ARVH+V+P+   F +    PTAS++++   N    
Sbjct: 120 QNINHLRALEGELARTIRAIEGIGGARVHLVLPERELFSRDRREPTASIVLKVSRNSLTT 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIE 242
           +  +AI++LVA+AV  L  G V+++D  G LL +    + +  ++          ++ + 
Sbjct: 180 QQVKAIQYLVASAVDGLSPGRVSIVDERGALLASGVGEDTQSLLVTSVDERRTGYENRLR 239

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
            ++   L   +G D  R  V A+++ +        +DP+ +V RS +   D   S     
Sbjct: 240 THLENILQRVVGADKARVEVTAQMDYNRITQTSDTFDPNGQVVRSTQTVDDNSTSADGAQ 299

Query: 303 ESAVTVEQNMPHVS-DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              VTV  N+P+ +         S + +++ EE  NYEI+  +     +  +++RLS+AV
Sbjct: 300 NDGVTVGNNLPNANLGGAEAETGSRQASNRTEETVNYEISRTTKTEVLEPGRVKRLSVAV 359

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN- 420
           +V+     +  G +    + +  L +I  +V +A G ++ RGD + I ++ F      + 
Sbjct: 360 LVDGSYAADAEGNTVYTPRTEQELGKIEALVKSAIGFDTSRGDQVEIVNLQFAAAPDLDV 419

Query: 421 ---SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                     FMD        +    V  +  L+     L  +           G++   
Sbjct: 420 GLSEEEEAKGFMDFTRAEVMRMAEMAVLTILALVAMLFVLRPMLSRAFSGSTTTGQIAYT 479

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           +        + + +    +       +   +        +++   V + S  ++  ++  
Sbjct: 480 NNS----AQAVLESPDGLDVPAGALPAPDQLSEDMMIDIAQVAGKVKQSSVRKIGELVTS 535

Query: 538 NEERFAKILRKWARS 552
           + +    ILR W   
Sbjct: 536 HPDESISILRSWLHE 550


>gi|330961220|gb|EGH61480.1| flagellar MS-ring protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 596

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/587 (20%), Positives = 225/587 (38%), Gaps = 54/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI + +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANIVYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P                                                  
Sbjct: 323 GVPGALSNQPPGPATAPQTAGGGAAGAAGPIAAGQPLLDANGQQIMDPATGQPALAPFPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEISRAPWSATDLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                  F  ++   V ++
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVI 498

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             L++ F  L  +        +K+ ++                 G + ND ++L      
Sbjct: 499 FILILVFGVLRPVLNNITNGKSKQ-QLAAFGGGDAELGGMGGLDGELSNDRVSLGGPQSI 557

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 558 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 596


>gi|331673452|ref|ZP_08374220.1| flagellar M-ring protein FliF [Escherichia coli TA280]
 gi|331069650|gb|EGI41037.1| flagellar M-ring protein FliF [Escherichia coli TA280]
          Length = 552

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQANTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMQAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|239834433|ref|ZP_04682761.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301]
 gi|239822496|gb|EEQ94065.1| flagellar M-ring protein FliF [Ochrobactrum intermedium LMG 3301]
          Length = 590

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/565 (37%), Positives = 324/565 (57%), Gaps = 7/565 (1%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    +++ P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLVALGLVGAALMAAILYTSIYLSRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G+LL +     N     + S+ Q +   
Sbjct: 188 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q  E ++DP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGMGHFQTSVQAVLDTDRRQTNETIFDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEEIQNRNGESSSEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL E  G +      +D  +A+I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLETAGTTPPPANFVDQQIAKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D + R   + +NAL  L    L+ + GL  L R  N   A       ++ 
Sbjct: 428 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNARTAGTEVAIRETS 487

Query: 480 LSPPPI----SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               P      +A           A+    +      +   S +   +   + LRL  MI
Sbjct: 488 DVAAPDFVGGQAAGEGVQGAQGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQMI 547

Query: 536 EINEERFAKILRKWARSEIEDRYTQ 560
           +++EER A +L++W       R  Q
Sbjct: 548 DMDEERVAAVLKQWIHETAASREGQ 572


>gi|153011515|ref|YP_001372729.1| flagellar MS-ring protein [Ochrobactrum anthropi ATCC 49188]
 gi|151563403|gb|ABS16900.1| flagellar M-ring protein FliF [Ochrobactrum anthropi ATCC 49188]
          Length = 579

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 213/561 (37%), Positives = 322/561 (57%), Gaps = 5/561 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    +++ P Y+ LYV L   DVN
Sbjct: 4   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLSRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKADGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIVM + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVMAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G+LL +     N     + S+ Q +   
Sbjct: 183 GFAAESAQSIRQLVAAAVPSLDASAVTVLDTNGRLLASAGEAANGAALMTASLEQQVAGN 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +QI E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGIGHFQTSVQAVLDTDRRQINETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 303 RNDNATGVEQNIPQEEIQNRNGESSTEKTDRREELTNYEMNSKTVSTVSDGYTVKRLSIA 362

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL E  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 363 VVIDQARLLETAGTTPPPANFVDQQITKIRDLVATAAGLNADRGDVINVTAVNFLDPAGA 422

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D + R   + +NAL  L    L+ + GL  L R  N      G       
Sbjct: 423 DMEPVSTPWTDTVLRQSGSYVNALAILAAVGLLIWFGLRPLLRDQNAK--PTGTEVAVRE 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            S   + + V          A+    +      +   S +   +   + LRL  MI+++E
Sbjct: 481 TSEVAMPNFVGGQAAGEGVQAVIGGPEAYADQMKTSLSDLRQRMRMPAKLRLEQMIDMDE 540

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A IL++W       R  Q
Sbjct: 541 ERVASILKQWIHETAASREAQ 561


>gi|222149996|ref|YP_002550953.1| flagellar MS-ring protein [Agrobacterium vitis S4]
 gi|221736978|gb|ACM37941.1| flagellar M-ring protein [Agrobacterium vitis S4]
          Length = 568

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 276/563 (49%), Positives = 377/563 (66%), Gaps = 9/563 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + +QLLQ FK+ +SLG T++  LA V +V + L + A FF+N P ++ LYV LE +DV
Sbjct: 7   MNLFNQLLQVFKNLSSLGPTKLWTLAGVGVVSVALVIGAAFFINKPAFETLYVGLEATDV 66

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA + F+   +G SI V + M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 67  NQISIALAEAGVGFQTGADGKSIQVQAGMTGKARLLLAERGLP-NSTNAGYELFDNVGSL 125

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ I+GI AARVHIVMPD+G+FR+   +PTASVMIRA 
Sbjct: 126 GLTSFMQEVTRVRALEGEIARTIQQINGIAAARVHIVMPDVGNFRRGAQKPTASVMIRAG 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           + +  KSA +IRHLVA+AVP L++ DVT+LDSTG+LL + +       ++L + Q++Q E
Sbjct: 186 SDAGRKSAASIRHLVASAVPGLEIDDVTILDSTGQLLASGDETGGAANRNLGVAQSVQQE 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           IE NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS R +K+AQ+S+  
Sbjct: 246 IESNIDKALAPFLGMDNFRSSVTAQLNTDQQQIQETVYDPESKVERSTRTTKEAQKSQQR 305

Query: 301 QPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           Q ++A TVEQN+P  + +     P S +  DKKEEQ+NYEIN+K+IAT  + Y L++LS+
Sbjct: 306 QSDTAATVEQNIPQAAPQAGGAGPESSDQQDKKEEQTNYEINSKTIATVKNGYTLDKLSV 365

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVNK R+  ++G   DQ KID+YLAE+ KIV +A G++ +RGD +T+T+MDFLENQL 
Sbjct: 366 AVVVNKQRIATMVGEPVDQAKIDAYLAEMQKIVKSAAGLDDKRGDVVTLTAMDFLENQLL 425

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +        M+ILSR+ A +IN+L FL    LV ++G+  + R          E G  ++
Sbjct: 426 SEAPTGPGVMEILSRNMAGIINSLAFLAVAFLVVWMGIRPMVRSMGGGGTAALEGGSDAV 485

Query: 480 LSPPPISSAVTTGLMPNDNIALD-------SSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                   +          +           S  D+ +   +     N  V +  + RL 
Sbjct: 486 AGLELPDFSPGLDAGAGGGLMDGFGSDFGFDSADDVLALDNDPNGGFNRRVKEGPERRLA 545

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            M+EI+EER AKILRKWA     
Sbjct: 546 RMVEISEERAAKILRKWAVENAA 568


>gi|121997300|ref|YP_001002087.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1]
 gi|121588705|gb|ABM61285.1| flagellar M-ring protein FliF [Halorhodospira halophila SL1]
          Length = 595

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/560 (22%), Positives = 224/560 (40%), Gaps = 15/560 (2%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-HYDNLYVKLEVSDVNRI 63
           +   +           R L L + +L    L +A  F+   P     LY  L   D   +
Sbjct: 43  EDWREQLTRVLGDNPLRKLGLGAGLLAVAGLGVAIFFWAQEPAELRTLYADLSSDDAAEV 102

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL E  +     +    I VP + V +ARI LA++GLP   S  GYE+ +    FG++
Sbjct: 103 INALEEQGVRVEFDERTGDIKVPENAVHRARIFLASEGLPR-GSGFGYEMLEDDPGFGVS 161

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
            FM+     RALE E+AR+I+++ G+V+ARVH+  P    F +      ASV++      
Sbjct: 162 EFMEHARFDRALETELARSIETLRGVVSARVHLDDPQESVFVRDRRDAKASVVLELDQDR 221

Query: 184 VY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQH 239
               +  E I HLVA+AV +L+ G+V+V+D  G+LLTA +         +   + + ++ 
Sbjct: 222 QLPDRQVEGIIHLVASAVSDLEHGNVSVVDHRGRLLTAEDEPTEATRSAQQFELTRRLEE 281

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+  +   +   +G D  R+ V A LN D ++  E ++DP+S   RS ++S+       
Sbjct: 282 RIQRRVEDMVEPIIGPDRVRAQVSARLNFDERRQIEELFDPESSAIRSEQMSER-SGGGG 340

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--KKEEQSNYEINTKSIATTHDNYKLERL 357
             P        N P                     +E  N+E+             ++RL
Sbjct: 341 QWPIGIPGALTNQPPGPGTLDGEELEGGGGTPFSSDETRNWEVGRTLSEVQPAIGVIDRL 400

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++ V+V+   +    G    +   D  +  +  +V  A G ++ RGD +++ ++ F E  
Sbjct: 401 TVGVLVDHRYVQNEDGEVVREALSDEEIQTLENLVQDAVGYDADRGDAVSVATVPFAEIV 460

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                  +V   +        +I   VF    LL+  + +  +       + +  E  G 
Sbjct: 461 EPPDPPEEVWEQE----WVRDLIRLAVFAAIGLLIYIVAIRPIVNRMLGGEDELDEESGG 516

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           +        +     L          +   +   S    S +     +     +L ++E 
Sbjct: 517 AETEGLERPAG--ESLASPGRGQEGEAALQLAGISGEQLSDMRERPYEAKLQAVLELVEN 574

Query: 538 NEERFAKILRKWARSEIEDR 557
             E  A  ++ W   + + +
Sbjct: 575 EPELAANAVKAWLDEDDKRK 594


>gi|325920574|ref|ZP_08182496.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas gardneri ATCC 19865]
 gi|325548967|gb|EGD19899.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas gardneri ATCC 19865]
          Length = 576

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/571 (19%), Positives = 229/571 (40%), Gaps = 32/571 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  ++   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVGAGLAVFYWSQKPGYQSLYTGLDDKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I  N  +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQNTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ +    RS +   +   +  +
Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQ--INDTSTSAT 312

Query: 301 QPESAVTVEQN-----------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
            P+       N                     +        +      K    NYE++  
Sbjct: 313 GPQGPPGATSNSPGQPPAPAANATAGAPGAPAAANGQAAAPAAPTESSKSATRNYELDRT 372

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RG
Sbjct: 373 LQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARG 432

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+++ +  F+   +      +      +       +  LV  V  L + F  +    R 
Sbjct: 433 DTVSVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQ 488

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                  K     K        +       M +D+  +    +D     ++ +  I    
Sbjct: 489 LTGVTVVKD----KQGKGGKDGTPQSADVRMVDDDDLMPRLEEDTAQLGQDKKVPIALPD 544

Query: 524 SKQSDLRL-LHMIEINEERFAKILRKWARSE 553
           + +  +R+    ++ + +R A++++ W  SE
Sbjct: 545 AYEERMRVAREAVKADSKRVAQVVKGWVASE 575


>gi|190574239|ref|YP_001972084.1| flagellar MS-ring protein [Stenotrophomonas maltophilia K279a]
 gi|190012161|emb|CAQ45784.1| putative flagellar M-ring protein [Stenotrophomonas maltophilia
           K279a]
          Length = 548

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/553 (21%), Positives = 224/553 (40%), Gaps = 21/553 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 73  DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI H+VAA++P+L    VTV+D +G++L+  +              V+  +  
Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSITDPNSEAAVNAAQFEQVRRQETS 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S+    + T 
Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NTTSTP 309

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P          ++   + K     NYE++     T     +++R+S+A
Sbjct: 310 GPQGVPGATSNSPPGQQAAPATAQTPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 368

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ + Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 369 VLVDNVPRAGANGKMSPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                    L+  V  L + F  L    R     + K  E       
Sbjct: 429 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDE------- 476

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
            P          L+ +D + L +   D  S +      +     ++        ++ + +
Sbjct: 477 -PALEPHTADVQLVDDDGMPLPALGADRASLAGPDALALPVDSYEERLRMAREAVKTDSK 535

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 536 RVAQVVKGWVAND 548


>gi|116250467|ref|YP_766305.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255115|emb|CAK06189.1| putative flagellar M-ring protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 561

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 295/562 (52%), Positives = 392/562 (69%), Gaps = 8/562 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +GSSISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGSSISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +   N    +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT  +YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSKTTATTRSSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA----KKGE 473
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  N   A       E
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSINGTSAAFGDATPE 479

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
             G  +    P S A    LM          + +      +     N  V +  + +L  
Sbjct: 480 AAGLELPDFAPASGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSR 539

Query: 534 MIEINEERFAKILRKWARSEIE 555
           M+EINEER AKILRKWA  E  
Sbjct: 540 MVEINEERAAKILRKWAIDEAA 561


>gi|323940403|gb|EGB36594.1| flagellar M-ring protein FliF [Escherichia coli E482]
          Length = 552

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT      R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                    A ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIAQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|261855054|ref|YP_003262337.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2]
 gi|261835523|gb|ACX95290.1| flagellar M-ring protein FliF [Halothiobacillus neapolitanus c2]
          Length = 590

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 229/572 (40%), Gaps = 35/572 (6%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
               T     R L++   +   +   +    +   P    LY  L   +   +  AL  A
Sbjct: 26  IDGFTQSSSFRQLLILVALAATLSFMVGFFLWGQKPSLVPLYTNLGPKESAAVVEALRAA 85

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
             ++++S +G +I V  + +   R+ LA +GLP S +  G E+ DK  S G + F+++  
Sbjct: 86  KKNYQLSADG-AILVDPAQLPAVRMLLAGEGLP-SGNGVGLEMLDKDQSLGTSQFVEQAR 143

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
              A+E E+AR+I++I G+ AARVH+  P    F +   +PTASV+  +           
Sbjct: 144 YQHAIEIELARSIETIQGVSAARVHLATPKQSVFVREQQKPTASVVVELSPGQSLTADQV 203

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMNI 245
            AI HLVA++V  +   +V+V+D  G+LL+ N  + +   +  K  +  Q ++      I
Sbjct: 204 RAIVHLVASSVAGMKPENVSVIDQRGELLSQNSDDASGMGLTDKQFAYRQRVERAYARQI 263

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR-SETSQPES 304
              L   +G +  R+ V A+++   Q+     Y P + V  S + +   +   +      
Sbjct: 264 EALLTPIVGANQVRAQVSADIDFSRQEGTSETYGPKTGVVLSEQTNDTTRALGDQGINGG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN------------------TDKKEEQSNYEINTKSIA 346
                 N P       P                         + +K E  NY ++     
Sbjct: 324 VPGALSNQPPGGGTVTPQTSGGLQPPANLDVQQYQQIIQTPISTQKNETRNYNVDKDIRH 383

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T + +  +++L++AV++++  +T+  G++  +   D+ LA I  +VS A G++ +RGD +
Sbjct: 384 TQYASGAVDKLNVAVLLDEKTVTDKDGKTKTEPMSDAELARIKDLVSQAVGLDEQRGDKL 443

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           T+ S+ F+E ++                 F  ++  L   V  LL+  + +  L ++   
Sbjct: 444 TLASIPFVEQKIEKVSVPLW-----QQEWFMPLLKNLGLGVAMLLIFLMVVRPLLKMLAD 498

Query: 467 DDAKKGEVGGKSILSPPPISS----AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
               +          P                   +        D   +   +   + + 
Sbjct: 499 KSRPEALPHQPGAALPNGTEDNGMNEEGVSFTRQASEGGQIPGPDDEDNLEGVPQLVGAA 558

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                  +L   I  + +  A ++++W  SE 
Sbjct: 559 SYADKLRQLKQSINHDPKAVAAVIKQWTHSEN 590


>gi|170019729|ref|YP_001724683.1| flagellar MS-ring protein [Escherichia coli ATCC 8739]
 gi|188492347|ref|ZP_02999617.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|300951563|ref|ZP_07165396.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1]
 gi|300956546|ref|ZP_07168828.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1]
 gi|169754657|gb|ACA77356.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739]
 gi|188487546|gb|EDU62649.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|300316646|gb|EFJ66430.1| flagellar M-ring protein FliF [Escherichia coli MS 175-1]
 gi|300449190|gb|EFK12810.1| flagellar M-ring protein FliF [Escherichia coli MS 116-1]
 gi|332093105|gb|EGI98169.1| flagellar M-ring protein FliF [Shigella boydii 5216-82]
          Length = 552

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT      R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|193222343|emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans]
          Length = 562

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/573 (21%), Positives = 221/573 (38%), Gaps = 59/573 (10%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
           +       R  +L   +   I + +    +   P Y  L+      D   I  +L  AN+
Sbjct: 17  NMAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANV 76

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ ++ G +I VP+  V + R+ LAA+GLP   S  G+EL  +    G++ F++++   
Sbjct: 77  PYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELM-ENQKLGVSQFLEQVNFQ 134

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190
           RALEGE+AR+IQS+  + AARVH+ +P    F +   +PTASV++          +   A
Sbjct: 135 RALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSA 194

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINK 247
           I HLVA++VP L   +VT++D  G LL+ N        +    L  VQ +Q  I   I  
Sbjct: 195 IVHLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIES 254

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--QPESA 305
            +   +G++N R+   A+++  T +    +Y P+     +   S+    S          
Sbjct: 255 IITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGV 314

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTD-------------------------KKEEQSNYEI 340
                N P  +                                       +++  +NYE+
Sbjct: 315 PGALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEV 374

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +            L+RLS+AVVVN  R+    G+ +     +    +I  +V  A G N 
Sbjct: 375 DKTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNK 434

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
            RGDT+ + +  F  +    +  + +                L+  +  L++ F  L  L
Sbjct: 435 DRGDTLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKPL 494

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
               N       +  G+ +     +   V                             I+
Sbjct: 495 LNKLNPPPLALTDESGQPVGMAQELEEEVG-------------------------PMGIH 529

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +  +Q+      +   + +  A I++ W  +E
Sbjct: 530 MHSYQQNLEAAKELARQDPKVVANIVKAWVGNE 562


>gi|187926897|ref|YP_001893242.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J]
 gi|241665226|ref|YP_002983585.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D]
 gi|187728651|gb|ACD29815.1| flagellar M-ring protein FliF [Ralstonia pickettii 12J]
 gi|240867253|gb|ACS64913.1| flagellar M-ring protein FliF [Ralstonia pickettii 12D]
          Length = 611

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/580 (22%), Positives = 242/580 (41%), Gaps = 49/580 (8%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              L    ++++    LV   +  A   +  +P Y  L+  +  +D   I  AL + N+ 
Sbjct: 41  LGRLSPRLLMMIGGAALV--AVLAAVMLWSRAPDYRVLFSNVSDADGGAIIAALQQMNVP 98

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +R +D G++I VP + V + R+ LA+QGLP     +G+EL  +   FG + F +++   R
Sbjct: 99  YRFADGGTAIMVPEANVHETRLKLASQGLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQR 156

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAI 191
           ALEGE+ARTIQ++  + +ARVH+ +     F +  A+P+ASV++             +AI
Sbjct: 157 ALEGELARTIQAMQEVQSARVHLALSKPSVFVREQAKPSASVLLTLYPGRMLDRSQVQAI 216

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKAL 249
            HLV+++VPNL + +VTV+D  G+LL++   +    +    L+ V+ I+      I   L
Sbjct: 217 GHLVSSSVPNLPLANVTVVDQAGRLLSSSFQDNASGLDPTQLNYVREIEQGYIKRIEAIL 276

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP---ESAV 306
              +G DN R+ V A++++D  +     Y P+     +   S     S  ++        
Sbjct: 277 GPVVGDDNVRAQVTADVDLDNTEQMAETYRPNQDPSTAAVRSTHTAESTQNKADAQGGVP 336

Query: 307 TVEQNMPHVSDRK-------------------------------VPLPRSLENTDKKEEQ 335
               N P  + R                                     +   +  ++  
Sbjct: 337 GALSNQPPTAPRMLPTAPAPASQPAAAGPNGANGQAQQPAAANTNATTTNGATSSTRDTT 396

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           +NYE++     T      + RLS+AVVVN             +   D+ +A++N +V  A
Sbjct: 397 TNYEVDKTVRRTRAAVGTVRRLSVAVVVNYRA-----DGKTWKPLSDAEMAKLNALVKDA 451

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G +++RGD++ + +  F          + +     + ++       L   +G L++ F 
Sbjct: 452 VGFDAKRGDSVNVVNSQFSGTLPVPKDDLPLWKQPEMIQYAIQAAKYLALAIGFLILVFA 511

Query: 456 GLHALRRLHNIDDAKKGE--VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            +  L R  N  DA      VG +      PI +       P       S+         
Sbjct: 512 VIRPLIRSLNKKDAPATPTFVGREGEDPNAPIITGAAASAGPELEGPSSSAIGAGGEDVP 571

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +   ++ +   +     +  + + N    A ++++W  +E
Sbjct: 572 DSLPQLKNADFEHKLETMRRVAQQNPRAVAAVIKQWVSNE 611


>gi|237799234|ref|ZP_04587695.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022089|gb|EGI02146.1| flagellar MS-ring protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 595

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/587 (21%), Positives = 231/587 (39%), Gaps = 55/587 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGLDSKQIMETL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ + AARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVLAIINLVATSVPELSKSQITVVDQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSGSG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P           +                                      
Sbjct: 323 GVPGALSNQPPGPATAPQTAGAGGAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPFPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+    T    G  +      + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLAR 442

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             ++V  A G ++ RGD++++ ++ F   +                  F  ++   V ++
Sbjct: 443 FTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDLVKQAVGVI 498

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             L++ F  L  +  L+NI + K  ++                 G + ND ++L      
Sbjct: 499 FILILVFGVLRPV--LNNITNGKSKQLAAFGGGDAELGGMGGLDGELSNDRVSLGGPQSI 556

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 557 LLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 595


>gi|260466610|ref|ZP_05812798.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075]
 gi|259029616|gb|EEW30904.1| flagellar M-ring protein FliF [Mesorhizobium opportunistum WSM2075]
          Length = 549

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 225/552 (40%), Positives = 328/552 (59%), Gaps = 7/552 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q+     +    G  R+ +LA + ++ + +   A  ++N P YD LYV L+ SDVN+I 
Sbjct: 3   EQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRSDVNQIG 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           + L EA I F +  +G+S+ VP+    +AR+ LA +GLP+S +N+GYELFD V + GLTS
Sbjct: 63  LVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPTS-ANAGYELFDNVGAMGLTS 121

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FMQ+ITRVRALEGEIARTIQSI+GI AARVHIVM +  +FR+   +P+ASV+IR      
Sbjct: 122 FMQQITRVRALEGEIARTIQSIAGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDA 181

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEM 243
            KSA +IRHLVAAAVP L    VTVLDS G LL A +   N    ++L + Q ++ +I  
Sbjct: 182 EKSAMSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGD 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           NI +AL  +LG DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + S   Q  
Sbjct: 242 NIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQAS 301

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  +VEQN+P         P++    D+KEE +NYEIN+K IAT  + Y + ++SIAVVV
Sbjct: 302 TPASVEQNLPETQAASTEGPQTSSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVV 361

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N+ RL  +LG+ A   +I   +AEI K+VS+ATG + +RGD I +++++F++  L     
Sbjct: 362 NQDRLKTILGKDATPEQIAKRVAEIQKMVSSATGFDDKRGDVIDVSAVEFID-GLDGEAV 420

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            Q   +D + +H  T+INA  F+V   LV F GL  +             + G +     
Sbjct: 421 PQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTAKATPTPAISGPNFDEVQ 480

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                       N  +    S +   +   +L+ +I          RL  M++INEER A
Sbjct: 481 RSLPTPEAAASANAAVGALPSARPGATPLDDLRQKIRPA----PQERLARMVDINEERTA 536

Query: 544 KILRKWARSEIE 555
           +ILRKWA  E+ 
Sbjct: 537 QILRKWAAQEVA 548


>gi|325291912|ref|YP_004277776.1| flagellar MS-ring protein [Agrobacterium sp. H13-3]
 gi|325059765|gb|ADY63456.1| flagellar MS-ring protein [Agrobacterium sp. H13-3]
          Length = 560

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 270/555 (48%), Positives = 384/555 (69%), Gaps = 7/555 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+Q+ Q  K+  +LG+TR+L+L  V ++ + + +AA  +VN P Y+ LYV LE SD+
Sbjct: 1   MNLLNQIPQVLKNFAALGQTRLLMLGGVGILSMAIILAAALYVNRPAYETLYVGLEKSDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA +DF++  +G+S+ VP  +  KAR+ LA +GLP  S+N+GYELFD V S 
Sbjct: 61  NKISIALAEAGLDFQVGTDGASLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI+R+IQ I GI AARVHIVMPD+G+FR+   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEISRSIQQIDGIAAARVHIVMPDVGNFRRGEQKPTASVMIRAN 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +  K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +   N    +SL++ Q +Q 
Sbjct: 180 ATAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A+LN D++QI+E VYDP+S+VERS+R  K+ Q+S+ 
Sbjct: 240 EITTNIDKALAPFLGMDNFRSSVTAQLNTDSRQIQETVYDPESRVERSVRTVKEDQKSQE 299

Query: 300 SQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +QP++A TVEQN+P  + +     P+S + + KKEEQ+NYEIN+K++AT  + Y +E++S
Sbjct: 300 TQPDTAATVEQNVPQAAPQGGAGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTVEKIS 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVNKGR+ +++G   DQ KID+YLAE+ KIV++A G++S RGD +T+T+MDFLE QL
Sbjct: 360 VAVVVNKGRIAKMVGEPVDQAKIDAYLAEMQKIVTSAAGVSSDRGDIVTLTAMDFLETQL 419

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474
            +        M++LSR+ A +IN+L F+    LV +LG+  L R    + A  G    E 
Sbjct: 420 LDEAASGPGIMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTGNGAAAGQISQET 479

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G  +    P   A   GLM          + D      + +   N  V +  + RL  M
Sbjct: 480 AGLELPDFSPGMDAGAGGLMEGFGADFGFDSTDDLLAGGDSEGTFNRRVREGPERRLSRM 539

Query: 535 IEINEERFAKILRKW 549
           +EI+EER AKILRKW
Sbjct: 540 VEISEERAAKILRKW 554


>gi|197249147|ref|YP_002146054.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212850|gb|ACH50247.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 579

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 390

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579


>gi|134095076|ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas arsenicoxydans]
          Length = 545

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/572 (21%), Positives = 220/572 (38%), Gaps = 59/572 (10%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
                  R  +L   +   I + +    +   P Y  L+      D   I  +L  AN+ 
Sbjct: 1   MAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVP 60

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++ ++ G +I VP+  V + R+ LAA+GLP   S  G+EL  +    G++ F++++   R
Sbjct: 61  YKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGS-VGFELM-ENQKLGVSQFLEQVNFQR 118

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191
           ALEGE+AR+IQS+  + AARVH+ +P    F +   +PTASV++          +   AI
Sbjct: 119 ALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSAI 178

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHEIEMNINKA 248
            HLVA++VP L   +VT++D  G LL+ N        +    L  VQ +Q  I   I   
Sbjct: 179 VHLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESI 238

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--QPESAV 306
           +   +G++N R+   A+++  T +    +Y P+     +   S+    S           
Sbjct: 239 ITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVP 298

Query: 307 TVEQNMPHVSDRKVPLPRSLENTD-------------------------KKEEQSNYEIN 341
               N P  +                                       +++  +NYE++
Sbjct: 299 GALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVD 358

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                       L+RLS+AVVVN  R+    G+ +     +    +I  +V  A G N  
Sbjct: 359 KTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNKD 418

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGDT+ + +  F  +    +  + +                L+  +  L++ F  L  L 
Sbjct: 419 RGDTLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKPLL 478

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
              N       +  G+ +     +   V                             I+ 
Sbjct: 479 NKLNPPPLALTDESGQPVGMAQELEEEVG-------------------------PMGIHM 513

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +  +Q+      +   + +  A I++ W  +E
Sbjct: 514 HSYQQNLEAAKELARQDPKVVANIVKAWVGNE 545


>gi|194439576|ref|ZP_03071649.1| flagellar M-ring protein FliF [Escherichia coli 101-1]
 gi|194421485|gb|EDX37499.1| flagellar M-ring protein FliF [Escherichia coli 101-1]
 gi|323972762|gb|EGB67962.1| flagellar M-ring protein FliF [Escherichia coli TA007]
          Length = 552

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLHANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|194469863|ref|ZP_03075847.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|200390157|ref|ZP_03216768.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205358799|ref|ZP_02659200.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194456227|gb|EDX45066.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|199602602|gb|EDZ01148.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205331875|gb|EDZ18639.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 579

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +   + ++ E SNYE++  
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 447 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579


>gi|198243509|ref|YP_002215117.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938025|gb|ACH75358.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 576

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 30  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 89

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 90  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 147

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 148 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 207

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 208 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 267

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 268 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 327

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 328 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 387

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 388 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 443

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 444 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 499

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 500 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 547

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 548 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 576


>gi|325981191|ref|YP_004293593.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212]
 gi|325530710|gb|ADZ25431.1| flagellar M-ring protein FliF [Nitrosomonas sp. AL212]
          Length = 571

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/572 (22%), Positives = 218/572 (38%), Gaps = 49/572 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +  +SL   + L L +     I L + A  +  +P Y  LY  L   D   I  AL + 
Sbjct: 19  LEHLSSLSNQKKLGLITSAAAVIALLVGALMWSQAPEYRALYNNLSDHDGAAIISALQQM 78

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ +  S++G +I +P   V + R+ LA QGLP      G+EL  +   FG + F++++ 
Sbjct: 79  NVPYTFSESGGTILIPEKQVHEVRLKLAGQGLPKGGL-VGFELM-ENQKFGSSQFLEQVN 136

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSA 188
             RALEGE+AR++QS+S + +ARVH+ +     F +   +P+ SV++          +  
Sbjct: 137 YQRALEGELARSVQSLSAVQSARVHLAIAKPSVFSREKQQPSVSVLLNLYPGRVLSIEQV 196

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNI 245
            AI HL+A++VPNL + +VTV+D  G LL++      +     K L+ +Q ++      I
Sbjct: 197 SAIVHLMASSVPNLPVKNVTVVDQNGNLLSSQNDKKEDSRFDAKQLAYIQELEENYIRRI 256

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE-RSIRLSKDAQRSETSQP-- 302
              L    G  N R+ V A+++    +  E  Y P++    R+   S+    S +     
Sbjct: 257 ETILTPITGATNVRAQVTADVDFSRIERAEETYRPNNTEADRASIRSQQTHESMSIGSKF 316

Query: 303 -ESAVTVEQNMPHVSDRKVPLPRSL--------------------ENTDKKEEQSNYEIN 341
                    N P                                     KKE   NYE++
Sbjct: 317 DGGIPGALTNRPPEPAIAPIEAGGKKPAGDKAEGDEEETDSTPPLPTDKKKESTINYEVD 376

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                T      ++RLS AVVVN  +  +  G    +      + EIN +V  A G N R
Sbjct: 377 KTVQHTQQSTGNIKRLSAAVVVNYRKKVDESGAITYEPLSAEEIKEINNLVREAMGYNER 436

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD++T+T+  F                           +    L+   +V F  L  LR
Sbjct: 437 RGDSLTVTNGLFTGETETVLEVP----FWKDPDVIMLAKDFAKQLLIIGVVLFFLLKILR 492

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                                        T  +  D  AL+         +     +   
Sbjct: 493 PFLKSLAPPPPLPALT-----------DNTTQVAADGTALEQLPGQTDGTAMQAIQK--- 538

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +  ++  R   +        A +++ W    
Sbjct: 539 SMFDENLKRAKQLAMDEPAIVANVVKDWIVKN 570


>gi|295098292|emb|CBK87382.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 543

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/568 (22%), Positives = 227/568 (39%), Gaps = 51/568 (8%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              L     + L       I + +A   +  SP Y  LY  L   D   I   L++ NI 
Sbjct: 1   MNRLRANPKIPLIVAGAAAIAIVVAMVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIP 60

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +R +DNG ++ VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   R
Sbjct: 61  YRFADNGGALEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQR 118

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAEAI 191
           ALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV   +            A+
Sbjct: 119 ALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVNLEPGRALDEGQISAV 178

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALA 250
            HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  ++  I   L 
Sbjct: 179 THLVSSAVAGLPPGNVTLVDQSGHLLTQSNTAGRDLNDAQLKYAADVEGRLQRRIEAILG 238

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVT 307
             +G  N  + V A+++   ++  E  Y P+    R++  S+    +E      P     
Sbjct: 239 PVVGSSNVHAQVTAQIDFSNKEQTEEQYAPNGDASRAVLRSRQINETEQVGGQYPGGVPG 298

Query: 308 VEQNMPHVSDRKV--------------------PLPRSLENTDKKEEQSNYEINTKSIAT 347
              N P  ++                           +      + E +NYE++     T
Sbjct: 299 ALSNQPAPANAAPISTPPANPQNGQQTNQQTTSTANSTGPRNSSRNETTNYEVDRTIRHT 358

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++RLS+AVVVN   L +              + +I  +   A G + +RGDT+ 
Sbjct: 359 KLNTGDIQRLSVAVVVNYKTLPDGK----PLPLTAEQMKQIEDLTREAMGFSEKRGDTLN 414

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F                      F  +++A  +L+  ++   L    +R      
Sbjct: 415 VVNSPFNPVDETGGELP----FWQQQAFFDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRR 470

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
              +     +    P              +       ++D     R    R+ + V  Q 
Sbjct: 471 AEAEKAALEQKNARP------------DEEEAVEVRLSKDEQMQQRRANQRMGAEVMSQ- 517

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             R+  M + +    A ++R W  +E E
Sbjct: 518 --RIREMSDNDPRVVALVIRGWMGNEHE 543


>gi|82702474|ref|YP_412040.1| flagellar MS-ring protein [Nitrosospira multiformis ATCC 25196]
 gi|82410539|gb|ABB74648.1| flagellar M-ring protein FliF [Nitrosospira multiformis ATCC 25196]
          Length = 567

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/561 (21%), Positives = 220/561 (39%), Gaps = 48/561 (8%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
                T L   + + L   +   + L  A   +   P Y  L+  +   D   I  +L +
Sbjct: 33  LQSFLTRLSSQQKIGLMLTVSSLVALLAAGWMWTQGPDYKVLFSNVSDGDGGAIIASLQQ 92

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ ++ G +I VPSS V   R+ LA+QGLP      G+EL  +   FG + F++++
Sbjct: 93  MNVPYKFAEGGGAILVPSSQVHDTRLKLASQGLPRGGL-VGFELM-ENQKFGTSQFLEQV 150

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187
              RALEGE+AR++Q+++ + +ARVH+ +P    F +   +P+ASV++          + 
Sbjct: 151 NFQRALEGELARSVQALAAVDSARVHLAIPKQSVFMREQQKPSASVLVNLYPGRTLDPQQ 210

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEIEMN 244
             AI HLV+++VPNL + +VTV+D  G LLT  +      G     L  + A++      
Sbjct: 211 VNAIVHLVSSSVPNLHVKNVTVVDQQGDLLTRIDESNPNTGLDPAQLKYLHALEQSYIKR 270

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-- 302
           I   L   +G +N R+ V AE++    +     Y P+     S   S+ +  S       
Sbjct: 271 IEAILIPIVGQENVRAQVAAEVDFAHSEQTSETYRPNQDPAGSTIRSQQSSESTNVGTQN 330

Query: 303 -ESAVTVEQNMPHVSDRK-----------VPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                    N P V                  P    ++ +K+   NYE++         
Sbjct: 331 EGGVPGALSNQPPVPATAPVTTPPAPPGATASPSRAPSSTRKDATINYEVDKTIQHVRKP 390

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              ++RLS+AVVVN  R+ +  G  + +   +   ++I  +V  A G +  RGDT+ + +
Sbjct: 391 VGGIKRLSVAVVVNHRRVVDENGVVSAKPLSEVEKSQITDLVKEAVGFSRERGDTLNVVN 450

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F   +   +  + +     +      +   L+     L +    L    +  +  +  
Sbjct: 451 SHFTGVEREAAPELPLWKQPEVVELAQQIGKTLLIGGLILYLVLGVLRPSLKRISQPEPP 510

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                        P+                             L+        +Q    
Sbjct: 511 LLAEPRNDDQDVQPV---------------------------PALKPAAQPSEYEQRLTL 543

Query: 531 LLHMIEINEERFAKILRKWAR 551
              + +   +  A ++++W  
Sbjct: 544 ARQLAKKEPKLVANVVKQWVA 564


>gi|293410294|ref|ZP_06653870.1| flagellar M-ring protein FliF [Escherichia coli B354]
 gi|291470762|gb|EFF13246.1| flagellar M-ring protein FliF [Escherichia coli B354]
          Length = 552

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIIAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +S P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSSYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRHAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|1772459|dbj|BAA14029.1| FliF [Escherichia coli W3110]
          Length = 552

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N R+ V A L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIRAQVTAHLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|194451642|ref|YP_002046020.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195873172|ref|ZP_02696421.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205357978|ref|ZP_03223896.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205359405|ref|ZP_02669752.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194409946|gb|ACF70165.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|195633848|gb|EDX52200.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205328375|gb|EDZ15139.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336392|gb|EDZ23156.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|323130248|gb|ADX17678.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 579

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +   + ++ E SNYE++  
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579


>gi|300920157|ref|ZP_07136607.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1]
 gi|300412814|gb|EFJ96124.1| flagellar M-ring protein FliF [Escherichia coli MS 115-1]
          Length = 552

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLHANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTSRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|16129885|ref|NP_416448.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108770|ref|AP_002550.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|157161409|ref|YP_001458727.1| flagellar MS-ring protein [Escherichia coli HS]
 gi|170081582|ref|YP_001730902.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170682432|ref|YP_001743307.1| flagellar MS-ring protein [Escherichia coli SMS-3-5]
 gi|193071157|ref|ZP_03052081.1| flagellar M-ring protein FliF [Escherichia coli E110019]
 gi|218554518|ref|YP_002387431.1| flagellar MS-ring protein [Escherichia coli IAI1]
 gi|238901143|ref|YP_002926939.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           BW2952]
 gi|253773113|ref|YP_003035944.1| flagellar MS-ring protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|260855913|ref|YP_003229804.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O26:H11 str. 11368]
 gi|300822292|ref|ZP_07102433.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7]
 gi|301018212|ref|ZP_07182727.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1]
 gi|331663434|ref|ZP_08364344.1| flagellar M-ring protein FliF [Escherichia coli TA143]
 gi|331668629|ref|ZP_08369477.1| flagellar M-ring protein FliF [Escherichia coli TA271]
 gi|2506421|sp|P25798|FLIF_ECOLI RecName: Full=Flagellar M-ring protein
 gi|1736604|dbj|BAA15763.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K12 substr. W3110]
 gi|1788248|gb|AAC75005.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157067089|gb|ABV06344.1| flagellar M-ring protein FliF [Escherichia coli HS]
 gi|169889417|gb|ACB03124.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170520150|gb|ACB18328.1| flagellar M-ring protein FliF [Escherichia coli SMS-3-5]
 gi|192955552|gb|EDV86031.1| flagellar M-ring protein FliF [Escherichia coli E110019]
 gi|218361286|emb|CAQ98870.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           IAI1]
 gi|238861094|gb|ACR63092.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           BW2952]
 gi|253324157|gb|ACT28759.1| flagellar M-ring protein FliF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|257754562|dbj|BAI26064.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O26:H11 str. 11368]
 gi|260448949|gb|ACX39371.1| flagellar M-ring protein FliF [Escherichia coli DH1]
 gi|284921846|emb|CBG34921.1| flagellar M-ring protein [Escherichia coli 042]
 gi|300399799|gb|EFJ83337.1| flagellar M-ring protein FliF [Escherichia coli MS 69-1]
 gi|300525175|gb|EFK46244.1| flagellar M-ring protein FliF [Escherichia coli MS 119-7]
 gi|309702227|emb|CBJ01544.1| flagellar M-ring protein [Escherichia coli ETEC H10407]
 gi|315136575|dbj|BAJ43734.1| flagellar MS-ring protein [Escherichia coli DH1]
 gi|323152731|gb|EFZ39003.1| flagellar M-ring protein FliF [Escherichia coli EPECa14]
 gi|323937208|gb|EGB33488.1| flagellar M-ring protein FliF [Escherichia coli E1520]
 gi|324118987|gb|EGC12876.1| flagellar M-ring protein FliF [Escherichia coli E1167]
 gi|331059233|gb|EGI31210.1| flagellar M-ring protein FliF [Escherichia coli TA143]
 gi|331063823|gb|EGI35734.1| flagellar M-ring protein FliF [Escherichia coli TA271]
          Length = 552

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|197264219|ref|ZP_03164293.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197242474|gb|EDY25094.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 579

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKAPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +   + ++ E SNYE++  
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 447 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579


>gi|281179000|dbj|BAI55330.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           SE15]
          Length = 552

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  +++                 ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQALARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|157158866|ref|YP_001463240.1| flagellar MS-ring protein [Escherichia coli E24377A]
 gi|157080896|gb|ABV20604.1| flagellar M-ring protein FliF [Escherichia coli E24377A]
          Length = 552

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV I   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTINLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|194445262|ref|YP_002041234.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194736346|ref|YP_002115003.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301177|ref|ZP_02664267.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204931028|ref|ZP_03221854.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194403925|gb|ACF64147.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194711848|gb|ACF91069.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288091|gb|EDY27478.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204320072|gb|EDZ05277.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 579

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 390

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579


>gi|90021833|ref|YP_527660.1| flagellar MS-ring protein [Saccharophagus degradans 2-40]
 gi|89951433|gb|ABD81448.1| flagellar M-ring protein FliF [Saccharophagus degradans 2-40]
          Length = 556

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/559 (20%), Positives = 224/559 (40%), Gaps = 26/559 (4%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                   +L   R   L   +   + +  A   +     Y  LY  L+  D + +   L
Sbjct: 11  NDLIDGFNNLNIIRQAGLMVGLAASVAIGFAVVLWSQGEDYKPLYGSLDRLDSSEVGAIL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I ++I  +  ++ V    V +AR+ LA  G+    +++GYEL D+    G + FM+
Sbjct: 71  DFNEIPYKIDGSTGALLVAVDEVHRARLVLAENGI-QGDNSTGYELLDQEQPLGTSQFME 129

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VY 185
                R +EGE+ARTI SI+ +  ARVH+ +P    F   G +P+ASV +          
Sbjct: 130 ATRYKRGIEGELARTIASINSVRGARVHLAIPKRSVFVGDGRKPSASVFLDLYPGRPIKP 189

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIE 242
           K  + I +LVA+++P L + +VTV+D  G LLT   A + +  I G+ L   Q ++  + 
Sbjct: 190 KQIQGIANLVASSIPELQVENVTVVDQKGNLLTTGIAEDKDLLIAGQHLEYTQKVEDGMI 249

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
           M + + L+  LG  NF++ V A+++    +  E V++PD    RS +  ++ +    + P
Sbjct: 250 MRVRRLLSPILGDQNFKTEVAADIDFTEIEQAEEVFNPDLPAVRSEQTVEEQRIGSGA-P 308

Query: 303 ESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                   N P    +                +  + +   NYE++     T  +  +L 
Sbjct: 309 GGIPGALTNQPPADGQAPEQAGQGGEGAGGQPSNTRSQAVRNYELDRTVSYTKREKGRLR 368

Query: 356 RLSIA-VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           RL++A V+ +K  +    G           L     +V  A G ++ RGD++ I +  FL
Sbjct: 369 RLTVAVVIDDKKTINPETGAVERTQWTQQELERFAILVRDAVGYSAVRGDSVNILNEAFL 428

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                        + +        +I  +   +  + +    +  + +   +   K  E 
Sbjct: 429 PEPAIEVLDDLPFWQNES---ILKLIKPIAGALIIVALLVGLVRPVLKSLAVAGVKTREQ 485

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                ++    +       + ++ + L   +                   +Q    +  +
Sbjct: 486 DEAKEMAALQAAGMDGFDSLSDETVTLTGGDALALPSPE--------EGYEQQLNAVKGL 537

Query: 535 IEINEERFAKILRKWARSE 553
           +  +  R A+++++W   E
Sbjct: 538 VAEDAGRVAQVIKRWINEE 556


>gi|193066388|ref|ZP_03047436.1| flagellar M-ring protein FliF [Escherichia coli E22]
 gi|194429948|ref|ZP_03062458.1| flagellar M-ring protein FliF [Escherichia coli B171]
 gi|301327725|ref|ZP_07220930.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1]
 gi|192925973|gb|EDV80619.1| flagellar M-ring protein FliF [Escherichia coli E22]
 gi|194412037|gb|EDX28349.1| flagellar M-ring protein FliF [Escherichia coli B171]
 gi|300845725|gb|EFK73485.1| flagellar M-ring protein FliF [Escherichia coli MS 78-1]
 gi|320198628|gb|EFW73228.1| Flagellar M-ring protein FliF [Escherichia coli EC4100B]
 gi|323158583|gb|EFZ44597.1| flagellar M-ring protein FliF [Escherichia coli E128010]
 gi|323183922|gb|EFZ69309.1| flagellar M-ring protein FliF [Escherichia coli 1357]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|322655518|gb|EFY51826.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322683020|gb|EFY79036.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|323204454|gb|EFZ89460.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
          Length = 531

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 223/556 (40%), Gaps = 52/556 (9%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVP 86
                 + + +A   +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP
Sbjct: 1   MAGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVP 60

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           +  V + R+ LA QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++
Sbjct: 61  ADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETL 118

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDM 204
             + +ARVH+ MP    F +    P+ASV +              A+ HLV++AV  L  
Sbjct: 119 GPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPP 178

Query: 205 GDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263
           G+VT++D +G LLT +    R++    L     ++  I+  I   L+  +G  N  + V 
Sbjct: 179 GNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVT 238

Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP------- 313
           A+L+   ++  E  Y P+    ++   S+    SE      P        N P       
Sbjct: 239 AQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAP 298

Query: 314 --------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                           +        +     ++ E SNYE++     T  +   +ERLS+
Sbjct: 299 IATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSV 358

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN   L +              + +I  +   A G + +RGDT+ + +  F      
Sbjct: 359 AVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNT 414

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                              ++ A  +L+  ++   L   A+R        +      ++ 
Sbjct: 415 GGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEETKAAQEQAQ 470

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           +                +       ++D     R    R+ + V  Q   R+  M + + 
Sbjct: 471 VR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDP 515

Query: 540 ERFAKILRKWARSEIE 555
              A ++R+W  ++ E
Sbjct: 516 RVVALVIRQWMSNDHE 531


>gi|332343664|gb|AEE56998.1| flagellar M-ring protein FliF [Escherichia coli UMNK88]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|205360218|ref|ZP_02681717.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350665|gb|EDZ37296.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 579

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 229/572 (40%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV +L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVASLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +   + ++ E SNYE++  
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 390

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 447 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579


>gi|218705431|ref|YP_002412950.1| flagellar MS-ring protein [Escherichia coli UMN026]
 gi|293405421|ref|ZP_06649413.1| fliF [Escherichia coli FVEC1412]
 gi|298381064|ref|ZP_06990663.1| flagellar M-ring protein [Escherichia coli FVEC1302]
 gi|218432528|emb|CAR13421.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           UMN026]
 gi|291427629|gb|EFF00656.1| fliF [Escherichia coli FVEC1412]
 gi|298278506|gb|EFI20020.1| flagellar M-ring protein [Escherichia coli FVEC1302]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLMAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|312973845|ref|ZP_07788017.1| flagellar M-ring protein FliF [Escherichia coli 1827-70]
 gi|310332440|gb|EFP99675.1| flagellar M-ring protein FliF [Escherichia coli 1827-70]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT      R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|327193018|gb|EGE59930.1| flagellar M-ring protein [Rhizobium etli CNPAF512]
          Length = 563

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 289/564 (51%), Positives = 392/564 (69%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +   N    +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT ++YK+E+L
Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSKTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ K+D+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKVDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R    + A        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVTGNGASAVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P   A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  +  
Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563


>gi|307312476|ref|ZP_07592110.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|306907647|gb|EFN38150.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|315061238|gb|ADT75565.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           W]
 gi|323378185|gb|ADX50453.1| flagellar M-ring protein FliF [Escherichia coli KO11]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|124265758|ref|YP_001019762.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1]
 gi|124258533|gb|ABM93527.1| flagellar biosynthesis lipoprotein [Methylibium petroleiphilum PM1]
          Length = 567

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 222/571 (38%), Gaps = 49/571 (8%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F     +L   R   L   +   + +  A   + +  +Y  LY  L   D   I   LS 
Sbjct: 21  FGSRLAALPAGRKFTLGIGLAALVGIAFAMSMWSSQGNYKVLYAGLSDKDGGAILAQLST 80

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ +D G++I VP+  V   R+ LA+ GLP   S  G+EL D    FG T F + +
Sbjct: 81  MNVPYKHADGGAAILVPADKVHDVRLKLASAGLPK-GSIVGFELMDNA-KFGQTQFQERL 138

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
           T  R LEGE+ R+I +++ + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 139 TFQRGLEGELTRSIGALAAVQSARVHLALPNQNGFFREQQKPSASVLLTLHPGRTLDRTQ 198

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQHEIEMN 244
              I HLV+++VP +D   VTVLD+TG L++      +   +  + L  V  I+      
Sbjct: 199 IAGIVHLVSSSVPEMDPKAVTVLDATGALISGAGDAGSAGGLDAQQLQYVGQIEGNYTKR 258

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK---------VERSIRLSKDAQ 295
           +   L   LG DN R+ V AE++    +     Y P+                    +A 
Sbjct: 259 VFDILEPVLGRDNLRAQVTAEVDFSQTESTSEAYAPNQGLGADGKPAAATLRSHQVSEAS 318

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-----------NTDKKEEQSNYEINTKS 344
              ++QP        N P V         +                ++E  +NYE++   
Sbjct: 319 GGGSAQPAGVPGAASNQPPVPATAPVNGSAQPLQTAQSGGGSGGNSRREATTNYEVDKTV 378

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
             T +    ++RL+ AVV+N   +T+  G+++        + ++  +V    G N+ RGD
Sbjct: 379 RVTRNATGTIKRLNAAVVLNHRSVTDAKGKTSTTPISAEEMEKLTALVKETIGFNADRGD 438

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           ++ + +  F   +      + +           T+       +  +++ F  +    +  
Sbjct: 439 SVKLINAPFKVEKPPVEEALPLWKQPETQDLLRTLAVPGALTLLAMIIVFGAVRPALK-- 496

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                           +  P         + +D  AL S      S        + + V 
Sbjct: 497 ----------------AAQPAQPQRQLDAVVDDVPALPSP----SSAQAAALPALEAPVV 536

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                +   + + N    A I+R W+  E  
Sbjct: 537 DTRLNQARALAKENPAAMANIVRGWSAKEAA 567


>gi|190890348|ref|YP_001976890.1| flagellar M-ring protein [Rhizobium etli CIAT 652]
 gi|190695627|gb|ACE89712.1| flagellar M-ring protein [Rhizobium etli CIAT 652]
          Length = 563

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 289/564 (51%), Positives = 393/564 (69%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  + I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGASISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +   N    +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L
Sbjct: 300 KQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  + + A        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P   A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAVGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  +  
Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563


>gi|13472585|ref|NP_104152.1| flagellar MS-ring protein [Mesorhizobium loti MAFF303099]
 gi|14023331|dbj|BAB49938.1| flagellar basal-body MS-ring protein; FliF [Mesorhizobium loti
           MAFF303099]
          Length = 549

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 221/552 (40%), Positives = 328/552 (59%), Gaps = 7/552 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q+     +    G  R+ +LA + ++ + +   A  ++N P YD LYV L+ +DVN+I 
Sbjct: 3   EQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIG 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           + L EA I F +  +G+S+ VP+    +AR+ LA +GLP+S +N+GYELFD V + GLTS
Sbjct: 63  LVLGEAGIGFDVGSDGTSVLVPAGTTAQARMLLAEKGLPTS-ANAGYELFDNVGAMGLTS 121

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FMQ+ITRVRALEGEIARTIQSISGI AARVHIVM +  +FR+   +P+ASV+IR      
Sbjct: 122 FMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDA 181

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEM 243
            KSA++IRHLVAAAVP L    VTVLDS G LL A +   N    ++L + Q ++ +I  
Sbjct: 182 EKSAQSIRHLVAAAVPGLSADKVTVLDSNGNLLAAGDDPSNTSAARTLGVEQTVEAQIGD 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           NI +AL  +LG DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + S   Q  
Sbjct: 242 NIRRALTPYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENSNQKQAS 301

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  +VEQN+P         P++    D+KEE +NYEIN+K IAT  + Y + ++SIAVVV
Sbjct: 302 TPASVEQNLPETQATSTEGPQTTSANDRKEEITNYEINSKKIATVSNGYTVTKMSIAVVV 361

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N+ RL  +LG+ A   +I   +AEI K+V++ATG++ +RGD I +++++F++  L     
Sbjct: 362 NQDRLKTILGKDATPEQIAKRVAEIQKMVTSATGLDDKRGDVIDVSAVEFID-GLDGEAI 420

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            Q   +D + +H  T+INA  F+V   LV F GL  +                   +   
Sbjct: 421 PQAGMLDSIGQHAGTLINAGAFIVVVFLVAFFGLRPMAAALTARATPALSGPNFDEVQRS 480

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             +            I     ++   +   +L+ +I          RL  M+++NEER A
Sbjct: 481 LPTPEAAASADAGAAIGALPGSRPGTNPLDDLRQKIRPA----PQERLARMVDLNEERTA 536

Query: 544 KILRKWARSEIE 555
           +ILRKWA  E+ 
Sbjct: 537 QILRKWAAQEVA 548


>gi|324114219|gb|EGC08192.1| flagellar M-ring protein FliF [Escherichia fergusonii B253]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 238/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPRIPLIVAGSAAVAVIVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D +G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN     +              + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKATPDGK----PLPLSAEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      +++A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNTSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++      +  AV   L  ++ +    +NQ + +   +    
Sbjct: 471 AVRPQLTRRVEAVKAVQQQAQAR-QEVEDAVEVRLSKDEQLQQRRANQRMSAEMMS---- 525

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                      R+  M + +    A ++R+W  ++ E
Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552


>gi|110642044|ref|YP_669774.1| flagellar MS-ring protein [Escherichia coli 536]
 gi|191173305|ref|ZP_03034835.1| flagellar M-ring protein FliF [Escherichia coli F11]
 gi|110343636|gb|ABG69873.1| flagellar M-ring protein [Escherichia coli 536]
 gi|190906422|gb|EDV66031.1| flagellar M-ring protein FliF [Escherichia coli F11]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|118593642|ref|ZP_01551018.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
 gi|118433753|gb|EAV40414.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
          Length = 537

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/552 (24%), Positives = 244/552 (44%), Gaps = 18/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    +   +LG  RI  + +V  + + +F    F V +P    LY +L + D   I   
Sbjct: 1   MNGLVEFIKTLGAARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAIVSQ 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + F I+  G+SI VP+  V + R+ LAA+GLP+  S  GYE+FD+ ++ G TSF+
Sbjct: 61  LESQGVQFEIARQGASILVPNEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGATSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RA+EGE++RTI S+  I AARVH+V+P+   F+K    P+AS+++         
Sbjct: 120 QNINHLRAMEGELSRTIGSLDRIRAARVHLVIPERQLFQKDRRPPSASIVLNVRGALGPG 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEM 243
              A++HLVA AV  L+   V+++D +G+LL +   N+ +  +          ++  +  
Sbjct: 180 EIRAVQHLVATAVDGLEPDRVSIVDESGRLLASGVGNDEDGLLTNSLQERTVEVEGRLRN 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + L + +G    R  V AE++ +        +DPD +V RS +  ++A  + +    
Sbjct: 240 QIEEILNSVVGPGRARVRVNAEVDYNRLTETTETFDPDGQVVRSTQSKEEASSAVSRN-- 297

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P+            + +   EE  NYEI+  +     +  K++RLS+AV+V
Sbjct: 298 GQVTVANQLPNADA--GQGGAERDTSSVTEEIVNYEISHSTRTEVVEAGKIKRLSVAVLV 355

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +     +  G S    +    L  I  +V +A G +S RGD + + ++ F      +   
Sbjct: 356 DGTYQPDGNGGSTYTPRSQETLDRIAVLVRSAVGFDSERGDVVEVVNLQFALPPQDDLLA 415

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
              S  D             V  +  +++    +  L R     + K+ +          
Sbjct: 416 ESDSLFDFTRNDIIRFAELGVLFLIAVMLLLFVVRPLLRRIVTPEEKQPQELMIGPDGTL 475

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
            I + V       D   ++   Q          ++    +   S  ++  MI+ +     
Sbjct: 476 VIETEVPQEEAVEDEFVIEWLEQ----------AKQEGAMQASSIAKVGDMIKDHPTEAV 525

Query: 544 KILRKWARSEIE 555
            I+R W   +  
Sbjct: 526 TIVRGWLDEQAA 537


>gi|317048599|ref|YP_004116247.1| flagellar M-ring protein FliF [Pantoea sp. At-9b]
 gi|316950216|gb|ADU69691.1| flagellar M-ring protein FliF [Pantoea sp. At-9b]
          Length = 571

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/546 (23%), Positives = 228/546 (41%), Gaps = 55/546 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I   L++ NI ++ ++NG ++ VP+  V + R+ LA QG
Sbjct: 48  WAKAPDYRVLYSNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKVHELRLRLAQQG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+++  + +AR+H+ MP  
Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARIHLAMPKP 165

Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV   ++          +A+ H+V+++VP L  G+VTV+D  G+LLT 
Sbjct: 166 TLFVREQKAPSASVTLNLQPGRALDEGQIQAVVHMVSSSVPGLPPGNVTVVDQAGRLLTR 225

Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           ++ E   +    L     ++   +  I   L   +G  N  + V A+LN D  +  +  Y
Sbjct: 226 SDSEGRDLNDAQLKYTAEVEGRYQQRIEAILNPIVGQGNVHAQVTAQLNFDRSEQTDEKY 285

Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV--------------- 320
            P+   + S   S+    SE +    P        N P  ++                  
Sbjct: 286 QPNGSPDNSAIRSRQTSTSEQNGSPYPGGVPGALSNQPAPANTAPVTNPPANNANGQNAN 345

Query: 321 ------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                           S  +  ++++  NYE++     T  +   ++RLS+AVVVN    
Sbjct: 346 GQNNAANGTNTSTTQNSGPSNSRRDDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNYR-- 403

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                +  +    D  + +I  +   A G +  RGD+I + +  F   +           
Sbjct: 404 --ADDKGKEVALNDQQIKQIEDLTREAMGYSQTRGDSINVVNSPFNMTEPAGGDLP---- 457

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
                  F  +++A  +L+  L+   L    +R        ++      +          
Sbjct: 458 FWQQQSFFDQLMSAGRWLLVALVAFILYRKLVRPQIMRKREQEQAAAEAAAARATAQEEE 517

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
               +           ++D     R   +R+++ V  Q   R+  M E +    A ++R+
Sbjct: 518 QAYSVQ---------LSKDELDQERKSTNRMSAEVMSQ---RIRDMSENDPRVVALVIRE 565

Query: 549 WARSEI 554
           W  +E+
Sbjct: 566 WMSNEL 571


>gi|289208337|ref|YP_003460403.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix]
 gi|288943968|gb|ADC71667.1| flagellar M-ring protein FliF [Thioalkalivibrio sp. K90mix]
          Length = 552

 Score =  369 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/552 (20%), Positives = 213/552 (38%), Gaps = 26/552 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    +   R L L  ++   I++ +A  ++   P Y  L+ ++E  +   +  ALS+A
Sbjct: 16  IREFNGMPAGRQLALLGMLAGAIVVIVAVLYWAFRPTYVPLFPRMESEEAAEVVQALSQA 75

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I +++      + VP   V +AR+ LA++GLP S  + G+EL  +    G +  ++   
Sbjct: 76  GISYQVDATTGQVKVPQGDVAEARLQLASEGLPRSG-DVGFELLQEDTGLGTSRMVEGAR 134

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--KSA 188
             RA+EGE+ART+ S+  +  ARVHI   +   F +     +ASV++             
Sbjct: 135 FHRAMEGELARTVASLDAVERARVHIAQAEQSVFVRDRRPASASVVVHLRGSRSLSDSQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNIN 246
            AI HLVA++   L+   VTV+D  G+LLT +  +         LS  + ++      I+
Sbjct: 195 AAIVHLVASSTSELEAERVTVVDQRGRLLTQDGADRGGMASSDRLSFSREVEQRYAERIH 254

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             LA  +G D  R  V A+++    +  E +YDP++   RS +  +D +      P    
Sbjct: 255 DLLAPIVGSDKVRVQVNADIDFSQVERTEELYDPETIALRSEQTREDERTGMDGGPAGVP 314

Query: 307 TVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
               N P              P  L  +       NYE++ +          + R+S AV
Sbjct: 315 GALTNQPPEGGAVEDPEGEMAPAPLPTSRSANVTRNYEVDRRINHIREAPGGIRRVSTAV 374

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VV+        G +    +    L  I  +V  A G +  RGDT+ + +  F        
Sbjct: 375 VVDFREQVGEDGATESVARDAEELERIEALVREAVGFSEARGDTLNVVTAPFEAPAEEMI 434

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                 +       F  ++     L+  L++    +    +       +      +  L+
Sbjct: 435 EDEVPFWSQS---WFLEMVKIGAGLLLALILLLTVVRPALKQLMASPPRDRRADQQRALT 491

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                 +          +A  +  +       +                +  M+  + +R
Sbjct: 492 DESDDDSAGAPAGSQSAVAALTGPKGPDQQEMD-------------LEAVREMVREDPKR 538

Query: 542 FAKILRKWARSE 553
            A++++ W   +
Sbjct: 539 VAQVMKTWLGDD 550


>gi|82543597|ref|YP_407544.1| flagellar MS-ring protein [Shigella boydii Sb227]
 gi|81245008|gb|ABB65716.1| FliF [Shigella boydii Sb227]
 gi|320186947|gb|EFW61661.1| Flagellar M-ring protein FliF [Shigella flexneri CDC 796-83]
 gi|332096898|gb|EGJ01887.1| flagellar M-ring protein FliF [Shigella boydii 3594-74]
          Length = 552

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +N   R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTLSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTSRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|331653350|ref|ZP_08354355.1| flagellar M-ring protein FliF [Escherichia coli M718]
 gi|331049448|gb|EGI21520.1| flagellar M-ring protein FliF [Escherichia coli M718]
          Length = 552

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT      R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFVDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|74312478|ref|YP_310897.1| flagellar MS-ring protein [Shigella sonnei Ss046]
 gi|73855955|gb|AAZ88662.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar
           protein [Shigella sonnei Ss046]
 gi|323168943|gb|EFZ54623.1| flagellar M-ring protein FliF [Shigella sonnei 53G]
          Length = 552

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +  S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYCFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|320175473|gb|EFW50572.1| Flagellar M-ring protein FliF [Shigella dysenteriae CDC 74-1112]
          Length = 552

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++      +  AV   L  ++ +    +NQ + +   +    
Sbjct: 471 AVRPQLTSRAEAMKAVQQQAQAR-EEVEDAVEVRLSKDEQLQQRRANQRLGAEIMS---- 525

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                      R+  M + +    A ++R+W  ++ E
Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552


>gi|256017869|ref|ZP_05431734.1| flagellar MS-ring protein [Shigella sp. D9]
 gi|332278895|ref|ZP_08391308.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9]
 gi|332101247|gb|EGJ04593.1| flagellar basal-body MS-ring and collar protein [Shigella sp. D9]
          Length = 552

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSSTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|300904828|ref|ZP_07122654.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1]
 gi|301305281|ref|ZP_07211378.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1]
 gi|300403255|gb|EFJ86793.1| flagellar M-ring protein FliF [Escherichia coli MS 84-1]
 gi|300839487|gb|EFK67247.1| flagellar M-ring protein FliF [Escherichia coli MS 124-1]
 gi|315257230|gb|EFU37198.1| flagellar M-ring protein FliF [Escherichia coli MS 85-1]
          Length = 552

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNPAAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  +++                 ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQALARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|26248206|ref|NP_754246.1| flagellar MS-ring protein [Escherichia coli CFT073]
 gi|227885633|ref|ZP_04003438.1| flagellar MS-ring protein [Escherichia coli 83972]
 gi|300975548|ref|ZP_07173059.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1]
 gi|301050702|ref|ZP_07197563.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1]
 gi|306814239|ref|ZP_07448405.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|26108610|gb|AAN80813.1|AE016762_66 Flagellar M-ring protein [Escherichia coli CFT073]
 gi|227837206|gb|EEJ47672.1| flagellar MS-ring protein [Escherichia coli 83972]
 gi|300297625|gb|EFJ54010.1| flagellar M-ring protein FliF [Escherichia coli MS 185-1]
 gi|300410317|gb|EFJ93855.1| flagellar M-ring protein FliF [Escherichia coli MS 45-1]
 gi|305852398|gb|EFM52849.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|307553951|gb|ADN46726.1| flagellar M-ring protein FliF [Escherichia coli ABU 83972]
 gi|315290255|gb|EFU49633.1| flagellar M-ring protein FliF [Escherichia coli MS 153-1]
          Length = 552

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|302185562|ref|ZP_07262235.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae 642]
          Length = 594

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 120/586 (20%), Positives = 221/586 (37%), Gaps = 56/586 (9%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+ 
Sbjct: 85  AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186
               R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++           
Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244
              AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +   
Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMESMLTQR 264

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS  S    
Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSGSSSGG 323

Query: 305 AVTVEQNMPHVSDRKVPLPRSL-----------------------------------ENT 329
                 N P                                                   
Sbjct: 324 VPGALSNQPPGPATAPQTAGGGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEI 388
            + +   N+E++     T     +L RLS+AVVV+    T    G         + LA  
Sbjct: 384 KRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ ++ F   +                  F  ++   V ++ 
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIF 499

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +         K+    G               G + ND ++L      +
Sbjct: 500 ILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSIL 556

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       +         +  ++  +  R A+++++W  ++ 
Sbjct: 557 LPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 594


>gi|331683490|ref|ZP_08384091.1| flagellar M-ring protein FliF [Escherichia coli H299]
 gi|331079705|gb|EGI50902.1| flagellar M-ring protein FliF [Escherichia coli H299]
          Length = 552

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDKGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|158422251|ref|YP_001523543.1| flagellar MS-ring protein [Azorhizobium caulinodans ORS 571]
 gi|158329140|dbj|BAF86625.1| flagellar M-ring protein [Azorhizobium caulinodans ORS 571]
          Length = 559

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 202/561 (36%), Positives = 301/561 (53%), Gaps = 13/561 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +QL +   +   LG  R++ L  +    + +      +++ P  + LY  L   DV
Sbjct: 1   MNAREQLERLLSNLRQLGARRLVALGLIAFTVMAVIGLGAMYLSQPERETLYANLSRDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI  AL +A I F +S +G+++ V  S   +AR+ LA +GLP SSS SGYELF+ V SF
Sbjct: 61  TRIGGALKDAGIPFDVSSDGATVLVAHSDTARARMLLAVKGLPQSSS-SGYELFNDVRSF 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+T+VRALEGEIARTIQ++ GI AARVHIV+PD GSFR+     TASV+IR  
Sbjct: 120 GLTSFMQEVTKVRALEGEIARTIQTMKGIKAARVHIVLPDRGSFRRDQQLATASVVIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQH 239
           N +   +A+AIRHLVAAA+P + + +VTVL++ G +LT+ E        +  ++ Q +  
Sbjct: 180 NSADSSTAQAIRHLVAAAIPGMKLDNVTVLNTEGTILTSTEDGVTAAATRKSALQQQVNR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E E  I + L  FLG+ NF  +V + LN D   I E  YDP SK ERS R+ K+  +++ 
Sbjct: 240 ETEEKIRRTLTPFLGLGNFEVSVSSRLNTDRSTINETTYDPASKAERSTRVVKEQGQTQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   TV+QN+P           + EN  ++EE +N+EI+T+   T  D Y +E LSI
Sbjct: 300 RSQQPNTTVQQNIPPPPGTPGTGTENNENNQRREELTNFEISTRQSQTVRDAYSVENLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VNK RLT     +  + +       I ++VS+A G +  RGD + + ++ F +    
Sbjct: 360 AVLVNKERLTGTKDGTPLETQTYE----IEQLVSSAAGFDKERGDKLKVVAVPFADGGNN 415

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                 +++ ++L R   T++NA+  LV  +L+ + GL    R              ++ 
Sbjct: 416 MEPIPPLTWSELLFRQAGTIVNAVTILVVAILLIWFGLRPALRAILARPEPDEAEAIEAA 475

Query: 480 LSPPPISSAVTTGLMPN-------DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           +   P      T L          D +   +      S   NL   + S V++    RL 
Sbjct: 476 MLAAPTELPPDTVLPSTAQNPNTLDGVTTLAGFTGGDSGPVNLIGDVTSKVNRSPQRRLE 535

Query: 533 HMIEINEERFAKILRKWARSE 553
            MIE +EE+ A ILR+W   E
Sbjct: 536 QMIEYDEEQAAAILRQWLHQE 556


>gi|331647532|ref|ZP_08348624.1| flagellar M-ring protein FliF [Escherichia coli M605]
 gi|330911744|gb|EGH40254.1| flagellar M-ring protein FliF [Escherichia coli AA86]
 gi|331043256|gb|EGI15394.1| flagellar M-ring protein FliF [Escherichia coli M605]
          Length = 552

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRILFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  +++                 ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQALARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|91211156|ref|YP_541142.1| flagellar MS-ring protein [Escherichia coli UTI89]
 gi|215487138|ref|YP_002329569.1| flagellar MS-ring protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218558795|ref|YP_002391708.1| flagellar MS-ring protein [Escherichia coli S88]
 gi|237705897|ref|ZP_04536378.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA]
 gi|300940393|ref|ZP_07154978.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|312967135|ref|ZP_07781353.1| flagellar M-ring protein FliF [Escherichia coli 2362-75]
 gi|91072730|gb|ABE07611.1| flagellar M-ring protein [Escherichia coli UTI89]
 gi|215265210|emb|CAS09600.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365564|emb|CAR03291.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           S88]
 gi|226900654|gb|EEH86913.1| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA]
 gi|294491623|gb|ADE90379.1| flagellar M-ring protein FliF [Escherichia coli IHE3034]
 gi|300454787|gb|EFK18280.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|307626586|gb|ADN70890.1| flagellar MS-ring protein [Escherichia coli UM146]
 gi|312288599|gb|EFR16501.1| flagellar M-ring protein FliF [Escherichia coli 2362-75]
 gi|323952431|gb|EGB48304.1| flagellar M-ring protein FliF [Escherichia coli H252]
 gi|323956334|gb|EGB52077.1| flagellar M-ring protein FliF [Escherichia coli H263]
          Length = 552

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|218549263|ref|YP_002383054.1| flagellar MS-ring protein [Escherichia fergusonii ATCC 35469]
 gi|218356804|emb|CAQ89432.1| flagellar basal-body MS-ring and collar protein [Escherichia
           fergusonii ATCC 35469]
 gi|325497680|gb|EGC95539.1| flagellar MS-ring protein [Escherichia fergusonii ECD227]
          Length = 552

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 238/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPRIPLIVAGSAAVAVIVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEVSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D +G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNVHAQVTAQLDFASKEQTEEQYRPNGDQSQATLRSRQVNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANSAPISTPPANQNNRQQQTSTSSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN     +              + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKATPDGK----PLPLSAEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      +++A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNTSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++      +  AV   L  ++ +    +NQ + +   +    
Sbjct: 471 AVRPQLTRRVEAVKAVQQQAQAR-QEVEDAVEVRLSKDEQLQQRRANQRMSAEMMS---- 525

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                      R+  M + +    A ++R+W  ++ E
Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552


>gi|222084850|ref|YP_002543379.1| flagellar M-ring protein [Agrobacterium radiobacter K84]
 gi|221722298|gb|ACM25454.1| flagellar M-ring protein [Agrobacterium radiobacter K84]
          Length = 559

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 269/554 (48%), Positives = 381/554 (68%), Gaps = 6/554 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+  F++  +LGRTR+L LA V ++ + L + A  +VN P  + LYV L+ +D+
Sbjct: 1   MNLLNQLVPLFRNLQNLGRTRLLTLAGVGILSVALVLFAALYVNKPAQETLYVGLDATDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EA I+F++  +G+S++VP+ M GKAR  LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISIALAEAKINFQVGADGTSLTVPTGMTGKARALLAERGLP-NSTNAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI RTI SISGI AARVHIVM D+G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIGRTITSISGISAARVHIVMQDVGNFRKADQKPTASVMIRAN 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +  K+A+AIRHLVA+AVP L++ DVT+LDSTG+LL + + + N    ++L IVQ +Q 
Sbjct: 180 AEAARKAAQAIRHLVASAVPGLEVDDVTILDSTGQLLASGDDQSNGALNRNLGIVQNVQG 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A+LN D+QQ++E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EIASNIDKALAPFLGMDNFRSSVTAQLNTDSQQVQETTYDPESKVERSVRTTKEAQKSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            Q ++A TVEQN+P  + +     P S + TDK+EEQ+NYEIN+K+ AT  ++Y++E+LS
Sbjct: 300 RQSDTAATVEQNIPQAAPQAGGNGPTSNDQTDKREEQTNYEINSKTTATVRNSYRIEKLS 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVN+GR+ +++G+ AD  K+D+Y+AE+ KIV+ A G++  RGD +T+ +MDFL+ QL
Sbjct: 360 VAVVVNRGRIAQMVGQPADPAKVDAYIAEMQKIVATAAGLDPSRGDVVTVNAMDFLDTQL 419

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD---AKKGEVG 475
            +     ++ MD+LSR+ A +IN+L F+   +L+ +LG   L R         A     G
Sbjct: 420 LDDNASGLNIMDVLSRNIAGIINSLAFVAVAVLIIWLGFRPLIRSLGGGANGTALPDAAG 479

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
            +     P         LM          + D         S  N  V +  + RL  M+
Sbjct: 480 LELPDFAPGAVGGPGAALMDGFGSDFGFDSTDDLLTMGEDNSTFNRRVKEGPERRLSRMV 539

Query: 536 EINEERFAKILRKW 549
           EI+EER AKILRKW
Sbjct: 540 EISEERAAKILRKW 553


>gi|86748397|ref|YP_484893.1| flagellar MS-ring protein [Rhodopseudomonas palustris HaA2]
 gi|86571425|gb|ABD05982.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris HaA2]
          Length = 532

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 133/551 (24%), Positives = 230/551 (41%), Gaps = 26/551 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V +  +  F      V+ P    LY  L V D + I   
Sbjct: 1   MQSLLGFLKGLGAARVMAMIAVTMALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + ++G+ + VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFEMRNDGAILMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE++RTI++I  + AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELSRTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244
              AIRHLVA+AV  L    V+++D  G+LL                    + +  +   
Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRMRNE 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++  +++TS  + 
Sbjct: 240 IEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QAQTSAADG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VTV   +P           + + + K EE +NYEI+  +     +  ++ RLS+AV+V+
Sbjct: 298 QVTVNNELPGNQA--PGGAGARDQSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVD 355

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                +  G      +    L  I  +V +A G + +RGD I + ++ F E         
Sbjct: 356 GSYTKDEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLRFAEAPQVEKLPE 415

Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                  +         +I   V  V  L+V F+ +  L +     D      G  ++  
Sbjct: 416 PAGLLGMLQFTKDDIMNMIQLGVMFVLGLVVLFMVIRPLVKRVLASDPASEASGLPALAD 475

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                                         S    +++   V  QS  R+  + E N   
Sbjct: 476 GSLPQIGSDGQAGT----------------SMIDIAQVQGQVHAQSVHRVGELAERNPNE 519

Query: 542 FAKILRKWARS 552
            A I+R+W   
Sbjct: 520 TAAIVRQWLAE 530


>gi|323977881|gb|EGB72967.1| flagellar M-ring protein FliF [Escherichia coli TW10509]
          Length = 552

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       +   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNNGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      +++A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|320194349|gb|EFW68980.1| Flagellar M-ring protein FliF [Escherichia coli WV_060327]
          Length = 552

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L             +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPGGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|205360167|ref|ZP_02835012.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340693|gb|EDZ27457.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 579

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVASSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSNNSNNAGPRNTQRNETSNYEVDRT 390

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 391 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 446

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 447 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 502

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 503 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 550

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 579


>gi|209919360|ref|YP_002293444.1| flagellar MS-ring protein [Escherichia coli SE11]
 gi|293446318|ref|ZP_06662740.1| flagellar M-ring protein FliF [Escherichia coli B088]
 gi|209912619|dbj|BAG77693.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           SE11]
 gi|291323148|gb|EFE62576.1| flagellar M-ring protein FliF [Escherichia coli B088]
          Length = 552

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|218699502|ref|YP_002407131.1| flagellar MS-ring protein [Escherichia coli IAI39]
 gi|218369488|emb|CAR17255.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           IAI39]
          Length = 552

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDELLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|194365657|ref|YP_002028267.1| flagellar MS-ring protein [Stenotrophomonas maltophilia R551-3]
 gi|194348461|gb|ACF51584.1| flagellar M-ring protein FliF [Stenotrophomonas maltophilia R551-3]
          Length = 548

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/553 (21%), Positives = 224/553 (40%), Gaps = 21/553 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V +   +   F+   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLFVFFWSQKPGMVPLYTGLDQKATAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F++      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 73  DLLRAAQIPFQLDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI H+VAA++P+L    VTV+D +G++L+ ++              V+  +  
Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S+    + T 
Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NSTTTP 309

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P          ++   + K     NYE++     T     +++R+S+A
Sbjct: 310 GPQGVPGATSNSPPGQAAAPATAQTPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 368

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ A Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                    L+  V  L + F  L    R     + K  E   +   
Sbjct: 429 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQNKKNDEQALEPHT 483

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                       L+ +D + L +   D  S        +     ++        ++ + +
Sbjct: 484 --------ADVQLVDDDGMPLPALGADRASLGGPDALALPVDSYEERLRMAREAVKTDSK 535

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 536 RVAQVVKGWVAND 548


>gi|323961982|gb|EGB57581.1| flagellar M-ring protein FliF [Escherichia coli H489]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  ++                     ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSEESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|260868531|ref|YP_003234933.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O111:H- str. 11128]
 gi|257764887|dbj|BAI36382.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O111:H- str. 11128]
 gi|323180809|gb|EFZ66349.1| flagellar M-ring protein FliF [Escherichia coli 1180]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 239/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFREQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  +   +   +  AV   L  ++ +    +NQ + +   +    
Sbjct: 471 AVRPQLTRRAEAMKAVQ-QQAQAHEEVEDAVEVRLSKDEQLQQRRANQRLGAEVMS---- 525

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                      R+  M + +    A ++R+W  ++ E
Sbjct: 526 ----------QRIREMSDNDPRVVALVIRQWINNDHE 552


>gi|146307847|ref|YP_001188312.1| flagellar MS-ring protein [Pseudomonas mendocina ymp]
 gi|145576048|gb|ABP85580.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp]
          Length = 594

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 118/586 (20%), Positives = 229/586 (39%), Gaps = 55/586 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++   +   R L L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGLDATQVVETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A I++ +  N  ++ V +  + +AR+ LAA G+  + ++ G+E+ D+    G + FM+
Sbjct: 85  NAAGINYTVEPNSGALLVKADDLSRARLRLAAAGVAPTDNSVGFEILDREQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
                R LEGE+ART+ S++ + AARVH+ MP    F +   +P+ASV++          
Sbjct: 145 ATRYRRGLEGELARTVSSLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD G VTV+D  G LL+  +   E  + GK     + ++     
Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMETLFTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++  + +    +++PD    RS +   + ++S +  P+
Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323

Query: 304 SAVTVEQNMP----------------------------------HVSDRKVPLPRSLENT 329
                  N P                                         P+       
Sbjct: 324 GVPGALSNQPPGAAAAPEQAGGAAGAAGPVAPGQPLVDANGQQITDPITGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS   VV ++ R+    G +         LA  
Sbjct: 384 KREQSTRNFELDRSISYTKQQQGRLRRLSVAVVVDDQVRVDPATGEANRVPWSADDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  + G ++ RGD++++ +  F  +       +                  +  ++G
Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPFYTQPWFWD-------IVKQVLG 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L +  L    LR + N         G            A   G +  D ++L      +
Sbjct: 497 VLFILVLVFGVLRPVLNNITGGGKGKGLAETGDVELGEMAGLDGELSEDRVSLGGPQSIL 556

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       S         +  ++  +  R A+++++W  ++ 
Sbjct: 557 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 594


>gi|15802373|ref|NP_288399.1| flagellar MS-ring protein [Escherichia coli O157:H7 EDL933]
 gi|15831931|ref|NP_310704.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. Sakai]
 gi|168751866|ref|ZP_02776888.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758251|ref|ZP_02783258.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764438|ref|ZP_02789445.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771544|ref|ZP_02796551.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777364|ref|ZP_02802371.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783334|ref|ZP_02808341.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790304|ref|ZP_02815311.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869]
 gi|168802284|ref|ZP_02827291.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508]
 gi|195939244|ref|ZP_03084626.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. EC4024]
 gi|208810543|ref|ZP_03252419.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817037|ref|ZP_03258157.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820542|ref|ZP_03260862.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395809|ref|YP_002271054.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328740|ref|ZP_03444821.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793588|ref|YP_003078425.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. TW14359]
 gi|261227567|ref|ZP_05941848.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261254609|ref|ZP_05947142.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. FRIK966]
 gi|12516042|gb|AAG56953.1|AE005416_7 flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362145|dbj|BAB36100.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767394|gb|EDU31238.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014158|gb|EDU52280.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999271|gb|EDU68257.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354893|gb|EDU73312.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359720|gb|EDU78139.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365550|gb|EDU83966.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370217|gb|EDU88633.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC869]
 gi|189375710|gb|EDU94126.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str. EC508]
 gi|208725059|gb|EDZ74766.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731380|gb|EDZ80069.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740665|gb|EDZ88347.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157209|gb|ACI34642.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766878|gb|ACI81751.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766880|gb|ACI81752.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766882|gb|ACI81753.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|209766886|gb|ACI81755.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|217318087|gb|EEC26514.1| flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592988|gb|ACT72349.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|320191912|gb|EFW66559.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str.
           EC1212]
 gi|326342348|gb|EGD66129.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1044]
 gi|326344853|gb|EGD68600.1| Flagellar M-ring protein FliF [Escherichia coli O157:H7 str. 1125]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSWRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|218689933|ref|YP_002398145.1| flagellar MS-ring protein [Escherichia coli ED1a]
 gi|291283115|ref|YP_003499933.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|293415248|ref|ZP_06657891.1| flagellar M-ring protein FliF [Escherichia coli B185]
 gi|301644603|ref|ZP_07244592.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|331677820|ref|ZP_08378495.1| flagellar M-ring protein FliF [Escherichia coli H591]
 gi|209766884|gb|ACI81754.1| flagellar hook-basal body MS ring protein FliF [Escherichia coli]
 gi|218427497|emb|CAR08270.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           ED1a]
 gi|290762988|gb|ADD56949.1| Flagellar M-ring protein FliF precursor [Escherichia coli O55:H7
           str. CB9615]
 gi|291432896|gb|EFF05875.1| flagellar M-ring protein FliF [Escherichia coli B185]
 gi|301077078|gb|EFK91884.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|320641786|gb|EFX11174.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. G5101]
 gi|320647145|gb|EFX15978.1| flagellar MS-ring protein [Escherichia coli O157:H- str. 493-89]
 gi|320652429|gb|EFX20727.1| flagellar MS-ring protein [Escherichia coli O157:H- str. H 2687]
 gi|320658031|gb|EFX25793.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320658603|gb|EFX26297.1| flagellar MS-ring protein [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668501|gb|EFX35328.1| flagellar MS-ring protein [Escherichia coli O157:H7 str. LSU-61]
 gi|331074280|gb|EGI45600.1| flagellar M-ring protein FliF [Escherichia coli H591]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|320182746|gb|EFW57630.1| Flagellar M-ring protein FliF [Shigella boydii ATCC 9905]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +R            V  ++                  ++      ++D     R    R
Sbjct: 471 TVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGTEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|256022404|ref|ZP_05436269.1| flagellar MS-ring protein [Escherichia sp. 4_1_40B]
 gi|301029395|ref|ZP_07192489.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1]
 gi|299877699|gb|EFI85910.1| flagellar M-ring protein FliF [Escherichia coli MS 196-1]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|191168288|ref|ZP_03030081.1| flagellar M-ring protein FliF [Escherichia coli B7A]
 gi|190901660|gb|EDV61416.1| flagellar M-ring protein FliF [Escherichia coli B7A]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVNQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|331657984|ref|ZP_08358946.1| flagellar M-ring protein FliF [Escherichia coli TA206]
 gi|331056232|gb|EGI28241.1| flagellar M-ring protein FliF [Escherichia coli TA206]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAQAVKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|323968354|gb|EGB63761.1| flagellar M-ring protein FliF [Escherichia coli M863]
 gi|327253070|gb|EGE64724.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v]
          Length = 552

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ +P    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDKSQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      +++A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQVFIDQLLSAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|330808215|ref|YP_004352677.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376323|gb|AEA67673.1| flagellar MS-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 594

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 117/586 (19%), Positives = 224/586 (38%), Gaps = 55/586 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLSEMTMLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + A+I + +  N  ++ V +  V +AR+ LAA G+  +  N G+E+ DK    G + FM+
Sbjct: 85  ASADIPYTVEPNSGALLVKADDVARARLKLAAAGVTPTDGNIGFEILDKDQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI S++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 145 ATRYRRGLEGELARTISSLNNVKGARVHLAIPKSSVFVRDERKPSASVLVELYSGRSLEP 204

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 205 GQVLAIINLVATSVPELSKSQITVVDQKGNLLSDQAENSELTMAGKQFDYSRRMEGMLTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG D +++ V A+++    +     ++PD    RS +   + QR+ ++ P+
Sbjct: 265 RVHNILQPILGNDRYKAEVSADVDFSAVESTSEQFNPDQPALRSEQSV-NEQRTASNGPQ 323

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------------------------------ENT 329
                  N P                                                  
Sbjct: 324 GVPGALSNQPPSPASAPQTTGGATAAAGMVQPGQPLIDANGQQIMDPATGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS+AVVV+    +    G ++        LA  
Sbjct: 384 KRQQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDQVKVNAANGETSRAPWSADELARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G ++ RGD++++ ++ F   +      +                     ++G
Sbjct: 444 TRLVQDAVGFDASRGDSVSVINVPFSLERGEVVADIPFYSQPWFWDVVKQ-------VLG 496

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L +  L    LR + N                          G + ND ++L      +
Sbjct: 497 VLFILVLVFGVLRPVLNNITGGGKSKQLAGFGDVELGGMGGLDGELANDRVSLGGPQSIL 556

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       S         +  ++  +  R A+++++W  ++ 
Sbjct: 557 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINADE 594


>gi|307138605|ref|ZP_07497961.1| flagellar MS-ring protein [Escherichia coli H736]
 gi|331642559|ref|ZP_08343694.1| flagellar M-ring protein FliF [Escherichia coli H736]
 gi|331039357|gb|EGI11577.1| flagellar M-ring protein FliF [Escherichia coli H736]
          Length = 552

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALAREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|300818642|ref|ZP_07098850.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
 gi|300528814|gb|EFK49876.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
          Length = 552

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|260844337|ref|YP_003222115.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O103:H2 str. 12009]
 gi|257759484|dbj|BAI30981.1| flagellar basal-body MS-ring and collar protein FliF [Escherichia
           coli O103:H2 str. 12009]
          Length = 552

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 234/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMMQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|254522751|ref|ZP_05134806.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14]
 gi|219720342|gb|EED38867.1| flagellar M-ring protein FliF [Stenotrophomonas sp. SKA14]
          Length = 547

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 115/553 (20%), Positives = 221/553 (39%), Gaps = 22/553 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+       +
Sbjct: 13  EKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLDQKATAEAT 72

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++   FG++ 
Sbjct: 73  DLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMERDPGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV +       
Sbjct: 132 FVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVTLELRGGQQ 191

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI H+VAA++P+L    VTV+D +G++L+ ++              V+  +  
Sbjct: 192 LERSQVDAIVHMVAASIPDLAPERVTVVDQSGRMLSVSDPNSEAAVNAAQFEQVRRQETS 251

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ + +  RS ++S+    + T 
Sbjct: 252 FNQRIRELLEPMTGPGRVNPEVSVDMDFSVTEEARELYNGEPQKLRSEQMSE--NSTTTP 309

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P+       N P          ++   + K     NYE++     T     +++R+S+A
Sbjct: 310 GPQGVPGATSNSPPGQQAAPATAQAPTESSK-NATRNYELDRTLQHTRQPAGRIKRVSVA 368

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+        G+ A Q    + L  +  +V  A G N+ RGDT+++ +  F+ +    
Sbjct: 369 VLVDNVPRAGANGKVAPQPLSAAELTRVEALVKQAVGFNAERGDTVSVMNAPFVRDTTPV 428

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            G                    L+  V  L + F  L    R          +       
Sbjct: 429 EGPAWWEL-----PWVHDAGRMLLGAVVVLALLFGVLRPALRAITGQKKNDEQALEPHTA 483

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                       L+ +D + L +   D  S        +     ++        ++ + +
Sbjct: 484 DVQ---------LVDDDGMPLPALGADRASLGGPDALALPVDSYEERLRMAREAVKTDSK 534

Query: 541 RFAKILRKWARSE 553
           R A++++ W  ++
Sbjct: 535 RVAQVVKGWVAND 547


>gi|148253400|ref|YP_001237985.1| flagellar MS-ring protein [Bradyrhizobium sp. BTAi1]
 gi|146405573|gb|ABQ34079.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. BTAi1]
          Length = 535

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 131/549 (23%), Positives = 229/549 (41%), Gaps = 21/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R+  + +V    I  F      V +P    L+  L + D + I   
Sbjct: 1   MQGLLDFLKGLGAARLTAMIAVTAALIGFFGFVIMRVTAPQMTTLFTDLGMDDSSSIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQGIPFEIRNEGSVILVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R        
Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVVRVRGALDAA 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AIRHLVA+AV  L    V+++D  G+LL                    +  +   + 
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNTFEKRMRKQVE 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             +++ +G    R  + A+ + +        YDP+ +V RS +  ++  +S +S+    V
Sbjct: 240 DIVSSVVGAGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREE--QSASSESNGQV 297

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV   +P     +       + + K EE +NYEI+  +     +  ++ R+S+AV+V+  
Sbjct: 298 TVNNELPGNQQNQQQQQPPRDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGA 357

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G    + +    L  I  +V +A G + +RGD + + ++ F +           
Sbjct: 358 YSKNEKGELVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADAPTVPQINEPS 417

Query: 427 SFMDILS---RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            F+ +L         VI   V ++  ++V F+ +  L +     D     +         
Sbjct: 418 GFLGMLQFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIIASDEVAAALKSAVPALT- 476

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                         +    +      + +    +++   V  QS  R+  + + N    A
Sbjct: 477 --------------DETAQAQAHAQQTATLIDVAQVQGQVHAQSVHRVGELADRNPGEAA 522

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 523 AIIRQWLAE 531


>gi|324005863|gb|EGB75082.1| flagellar M-ring protein FliF [Escherichia coli MS 57-2]
          Length = 552

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAVQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  ++                     ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSEESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|323948358|gb|EGB44345.1| flagellar M-ring protein FliF [Escherichia coli H120]
          Length = 552

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|312946531|gb|ADR27358.1| flagellar MS-ring protein [Escherichia coli O83:H1 str. NRG 857C]
          Length = 552

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAVQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|148266223|ref|YP_001232929.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4]
 gi|146399723|gb|ABQ28356.1| flagellar M-ring protein FliF [Geobacter uraniireducens Rf4]
          Length = 525

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 124/560 (22%), Positives = 244/560 (43%), Gaps = 49/560 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +   +  +   +L   + LI+A V +  ++ F A     N   Y  L+  L   D   
Sbjct: 1   MQEGFKKLLEPFLTLPPAKRLIVAGVAVASLVAFAALIVVANKTDYRPLFANLTTEDAGE 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +  + ++I+ +G +I VPS  V   R+ LA++GLP      G+E+FD+ N FG+
Sbjct: 61  IVKKLKDQKVPYQIAADGKAILVPSDKVYDLRLSLASEGLPQGGG-VGFEIFDRKN-FGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI  ++G+  ARVH+ + +   F+      TASV+++  + 
Sbjct: 119 TEFVQKLNYQRALQGELSRTIAQLAGVEQARVHLAIAEKSLFKDNEKPTTASVVLKMKSN 178

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAI 237
                   + + HLVA+++  +D  +VTVLDS GK+L+   A+++   +        +  
Sbjct: 179 HTLRENEVQGVVHLVASSIEGMDPENVTVLDSRGKMLSKVGASDLTSKMTSTMQETQRTY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++    
Sbjct: 239 EKNLEDRLQTLLDKVVGTGKSVARVSATFDFKQVEKYEERYDPESAAVRSEQRSEEK-GG 297

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++       V+ NM   +   V          K +E  NYE++  +         + ++
Sbjct: 298 ASTVAAGVPGVQSNMAKAAPAGVTSGGG----SKSDETLNYEVSRSTARIIEPVGSMNKV 353

Query: 358 SIAVVVNKGRLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           S+A++V+   +           ++  Q +    L +I  +V +A G N+ RGD +T+ ++
Sbjct: 354 SVAILVDGKYVAPASAKEGATAKAKYQPRTPDELQKIEALVKSAVGFNAERGDQVTVANI 413

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F E     +      +   + +    ++  L+  +G   + FL +  L +         
Sbjct: 414 PFQETDDGGASDQDKWWNAPIMQ---ALLKNLLIALGFFALLFLVIRPLLKTLK------ 464

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                       P  +A T   +P D+ A+  +            +++           L
Sbjct: 465 ------------PHKAASTFQPLPEDDAAMQLAEVHKQQLEMQSLNQLE----------L 502

Query: 532 LHMIEINEERFAKILRKWAR 551
           +  ++ +  + A+IL+ W  
Sbjct: 503 IEKVKQDPYQVAQILQNWLS 522


>gi|323186814|gb|EFZ72134.1| flagellar M-ring protein FliF [Escherichia coli RN587/1]
          Length = 552

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDETQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++    +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAVGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|315296472|gb|EFU55769.1| flagellar M-ring protein FliF [Escherichia coli MS 16-3]
          Length = 552

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ L  QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLTQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRTLDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|309795955|ref|ZP_07690368.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7]
 gi|308120405|gb|EFO57667.1| flagellar M-ring protein FliF [Escherichia coli MS 145-7]
          Length = 552

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 236/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L +G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPLGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|307131589|ref|YP_003883605.1| flagellar M-ring protein fliF [Dickeya dadantii 3937]
 gi|306529118|gb|ADM99048.1| Flagellar M-ring protein fliF [Dickeya dadantii 3937]
          Length = 573

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 128/587 (21%), Positives = 229/587 (39%), Gaps = 66/587 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  L   D   I   L
Sbjct: 13  KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            + NI +R +++G++I +PS  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 73  GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
           +I   RALEGE+ART++++  I  ARVH+ +P    F +    P+A+V +          
Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               AI +LV+++V  L    VTV+D TGKLLT N+     +    L     ++   +  
Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           I   L   +G  N  + V A+++  +++  +  Y P+    ++   S+   +S+      
Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310

Query: 299 --------TSQPESAVTVEQNMPH-----------------------VSDRKVPLPRSLE 327
                   ++ P  A T   + P                         +        +  
Sbjct: 311 VGGVPGALSNTPTPAPTAPISTPPANNANNANNANNANNANANTAGTNTQTSAGNAANQT 370

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
              + ++  NYE++     T  +   ++RLS+AVVVN        G+ A     D  L +
Sbjct: 371 YNSRHDQTINYEVDRTIRHTKQNTGNVQRLSVAVVVNY--TQGEDGKPA--ALNDDQLKK 426

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           I  +V  + G ++ RGDT+ + +  F                      F  +     +L+
Sbjct: 427 IEALVRESMGFSNDRGDTLNVVNTPFTITDATGGELP----FWQKQAFFDLLTEVGRWLL 482

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             ++   L    +R         +      + L        VT   M  +          
Sbjct: 483 VLIVGWILYRKLVRPQLQRRAQVQEAAEAAASLRGQDADVTVTLSTMEEE---------- 532

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                R  + R ++ +  Q   R+  + E +    A ++R W  +E+
Sbjct: 533 ---LQRKSEQRAHAEMHSQ---RVRELAENDPRVVALVIRHWMSNEL 573


>gi|83747628|ref|ZP_00944664.1| FliF [Ralstonia solanacearum UW551]
 gi|207739709|ref|YP_002258102.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609]
 gi|83725680|gb|EAP72822.1| FliF [Ralstonia solanacearum UW551]
 gi|206593091|emb|CAQ59997.1| flagellar m-ring protein [Ralstonia solanacearum IPO1609]
          Length = 611

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 130/553 (23%), Positives = 235/553 (42%), Gaps = 47/553 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL  +   FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +  A+P+ASV+++            +AI HLV+++VPNL + +VTV+D +G+LL+
Sbjct: 184 PSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLLS 243

Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           +   +    +    L+ V+ I+      I   L   +G DN R+ V A++++D  +    
Sbjct: 244 SSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMAE 303

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322
            Y P+      +  S     S  ++            N P  + R +P            
Sbjct: 304 TYRPNQDPANGVVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQAAA 363

Query: 323 --------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                 +   +  ++   NYE++     T      + RLS+AVV
Sbjct: 364 GQNGQNAPNGQQQAAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGIVRRLSVAVV 423

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN             +   D+ + ++N +V  A G +++RGD++ + +  F      +  
Sbjct: 424 VNYRA-----DGKTWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPTSRD 478

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE--VGGKSIL 480
            + +     +  +           +G L++ F  +  L R  N  +       VG +   
Sbjct: 479 DLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFVGREGDD 538

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              PI +       P       +S  D  +    L     ++  +Q    +  + + N  
Sbjct: 539 PNAPIITGAAAPAGPGLEGPSSASAADGDAVPEELPQLKQNHEFEQKLETMRRIAQQNPR 598

Query: 541 RFAKILRKWARSE 553
             A ++++W   E
Sbjct: 599 AVAAVIKQWVSIE 611


>gi|324013493|gb|EGB82712.1| flagellar M-ring protein FliF [Escherichia coli MS 60-1]
          Length = 552

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  +   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNISDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|218695543|ref|YP_002403210.1| flagellar MS-ring protein [Escherichia coli 55989]
 gi|218352275|emb|CAU98032.1| flagellar basal-body MS-ring and collar protein [Escherichia coli
           55989]
          Length = 552

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKTPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNEGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  + + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREISDNDPRVVALVIRQWINNDHE 552


>gi|300923899|ref|ZP_07139914.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1]
 gi|300419862|gb|EFK03173.1| flagellar M-ring protein FliF [Escherichia coli MS 182-1]
          Length = 552

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 129/577 (22%), Positives = 237/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRVSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKEARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PVPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|292487992|ref|YP_003530869.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|292899212|ref|YP_003538581.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291199060|emb|CBJ46171.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291553416|emb|CBA20461.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|312172117|emb|CBX80374.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158]
          Length = 573

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 129/550 (23%), Positives = 232/550 (42%), Gaps = 58/550 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV   ++           A+ H+V+++V  +  G+VTV+D +G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQSGRLLT 223

Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+     +    L     ++   +  I   L   LG  N  + V A+++ + ++  +  
Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV-------------- 320
           Y P++  +R    S+    S                N P  ++                 
Sbjct: 284 YSPNTNPDRQAIRSRQTSNSEQLGGPSAGGVPGALSNQPAPANAAPVTTANPNANNANAA 343

Query: 321 ----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                              +++ ++ + +  +NYE+N   + T  +  +++RLS+AVVVN
Sbjct: 344 NAANANNGQPANNAASGAQKTVPSSTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVN 403

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                            DS + +I  +   A G + +RGD++ + +  F +N    +   
Sbjct: 404 ----FRTDAAGKPIALKDSQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP 459

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
                  + + F      LV +V  +L   L    LRR      A +   G     S   
Sbjct: 460 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAGNALRSSTQD 519

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
              AV             S ++D  +  R  Q R+++ V  Q   R+  M E +    A 
Sbjct: 520 EGVAV-------------SLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVAL 563

Query: 545 ILRKWARSEI 554
           ++R+W + E+
Sbjct: 564 VIRQWMKDEL 573


>gi|56413118|ref|YP_150193.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362044|ref|YP_002141681.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56127375|gb|AAV76881.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093521|emb|CAR58982.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 563

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 17  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 76

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 77  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 134

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 135 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 195 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 254

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 255 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 314

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 315 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 374

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 375 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 430

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 431 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 486

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 487 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 534

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 535 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 563


>gi|205357292|ref|ZP_02346550.2| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322643|gb|EDZ10482.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 585

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 126/578 (21%), Positives = 227/578 (39%), Gaps = 58/578 (10%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 33  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 92

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 93  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 150

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 151 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 210

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 211 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 270

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 271 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 330

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN---------------------------TDKKEEQSN 337
                 N P   +                                      + ++ E SN
Sbjct: 331 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTSTSTSTNSNSAGPRSTQRNETSN 390

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           YE++     T  +   +ERLS+AVVVN   L +              + +I  +   A G
Sbjct: 391 YEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMG 446

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            + +RGDT+ + +  F                         ++ A  +L+  ++   L  
Sbjct: 447 FSDKRGDTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWR 502

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
            A+R        +      ++ +                +       ++D     R    
Sbjct: 503 KAVRPQLTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQ 550

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 551 RLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 585


>gi|310767344|gb|ADP12294.1| flagellar MS-ring protein [Erwinia sp. Ejp617]
          Length = 569

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 122/546 (22%), Positives = 231/546 (42%), Gaps = 54/546 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV   ++           A+ H+V+++V  +  G+VTV+D  G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223

Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+     +    L     ++   +  I   L   LG  N  + V A+++ + ++  +  
Sbjct: 224 QNDSGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLP----------- 323
           Y P+S+ ++    S+    S     S          N P  ++     P           
Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343

Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                          +++ +  + +  +NYE+N   + T  +  +++RLS+AVVVN    
Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR-- 401

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                        D+ + +I  +   A G + +RGD++ + +  F +N    +       
Sbjct: 402 --ADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP---- 455

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
                     + NA  +L+  ++   L    +         ++      +I +    +  
Sbjct: 456 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKAAEEAAINAARSSTR- 514

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                   D     S ++D  +  R  Q R+++ V  Q   R+  M E +    A ++R+
Sbjct: 515 --------DEGVAVSLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563

Query: 549 WARSEI 554
           W + E+
Sbjct: 564 WMKDEL 569


>gi|259908758|ref|YP_002649114.1| flagellar MS-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|224964380|emb|CAX55889.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|283478734|emb|CAY74650.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163]
          Length = 569

 Score =  366 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 122/546 (22%), Positives = 231/546 (42%), Gaps = 54/546 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLFSNLSNEDGGTIVTQLTQMNVPYKFDDQGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F +++   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTISTLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV   ++           A+ H+V+++V  +  G+VTV+D  G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPPGNVTVVDQAGRLLT 223

Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+     +    L     ++   +  I   L   LG  N  + V A+++ + ++  +  
Sbjct: 224 QNDPGGRDLNDTQLKYANDVETRYQQRIEAILGPILGNGNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLP----------- 323
           Y P+S+ ++    S+    S     S          N P  ++     P           
Sbjct: 284 YSPNSQPDQQAIRSRQTSNSEQLGGSSAGGVPGALSNQPAPANAAPVTPANNNANNANAN 343

Query: 324 ---------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                          +++ +  + +  +NYE+N   + T  +  +++RLS+AVVVN    
Sbjct: 344 ANNGQPANNAANAAQKTVPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR-- 401

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                        D+ + +I  +   A G + +RGD++ + +  F +N    +       
Sbjct: 402 --ADAAGKPIALKDAQIKQIENLTREAMGFSEQRGDSLNVVNSQFTDNSDLAAELP---- 455

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
                     + NA  +L+  ++   L    +         ++      +I +    +  
Sbjct: 456 FWKQPAFIDQLFNAGRWLLVLIVAFILYRKLVSPQLRRKAEQQKATEEAAINAARSSTR- 514

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                   D     S ++D  +  R  Q R+++ V  Q   R+  M E +    A ++R+
Sbjct: 515 --------DEGVAVSLSKDELNQERKSQHRMSAEVLSQ---RIREMSENDPRVVALVIRQ 563

Query: 549 WARSEI 554
           W + E+
Sbjct: 564 WMKDEL 569


>gi|299068777|emb|CBJ40017.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CMR15]
          Length = 611

 Score =  366 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 129/553 (23%), Positives = 232/553 (41%), Gaps = 47/553 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL  +   FG + F++++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +P+ASV+++            +AI HL+A++VP+L + +VTV+D +G+LL+
Sbjct: 184 PSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLLS 243

Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           A   +    +    L+ V+ I+      I   L   LG DN R+ V A++++D  +    
Sbjct: 244 AAFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGDDNVRAQVTADVDLDNTEQMAE 303

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322
            Y P+         S     S  ++            N P  + R +P            
Sbjct: 304 TYRPNQDPANGAVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPAAQQAAA 363

Query: 323 ---------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                                  +   +  ++  +NYE++     T      + RLS+AV
Sbjct: 364 GQNGQNGQNGQQQGAAGTGQAAANSVESSARDITTNYEVDKTVRRTRAAVGTVRRLSVAV 423

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN             +   D+ + ++N +V  A G +++RGD++ + +  F      + 
Sbjct: 424 VVNYRA-----DGKTWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPTSK 478

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK-GEVGGKSIL 480
             + +     +  +           +G L++ F  +  L R  N  D        G+   
Sbjct: 479 DDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPATATFVGREGE 538

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
            P              +     S++ D       L     S   +Q    +  + + N  
Sbjct: 539 DPNAPIITGAAAPAGPELEGPSSASIDGDDIPEELPQLKQSRDFEQKLETMRRVAQQNPR 598

Query: 541 RFAKILRKWARSE 553
             A ++++W  +E
Sbjct: 599 AVAAVIKQWVSNE 611


>gi|254504967|ref|ZP_05117118.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
 gi|222441038|gb|EEE47717.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
          Length = 548

 Score =  366 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 207/555 (37%), Positives = 314/555 (56%), Gaps = 10/555 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R++ LA + L  I    A  F+++ P    LY  L   DV
Sbjct: 1   MPGREHAEKLWANLMELGMRRLIALALIGLATIATVGAGAFYLSRPETTPLYTGLTGEDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI  AL +A I F +S  G ++ V      KAR+ LA +GLP   +NSGYELFD + S 
Sbjct: 61  SRIGSALRDAGIPFDVSSEGDAVMVSHGQTAKARMLLAEKGLPR-GANSGYELFDDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+    P+ASV+IR+ 
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
            P   ++A+AIRHLVAA VP ++   VTVLD+TG +L A +         ++ +  A+ +
Sbjct: 180 IPDDVRTADAIRHLVAAGVPGMEAAKVTVLDTTGGILAAGKDPTKASAGQMATLETAVSN 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ N+ K L  +LG+DNF+ +V A+LN D + I E ++DPDS++ERS+R  ++ + +E 
Sbjct: 240 RIQENVRKTLTPYLGLDNFQVSVAAKLNTDRKMIAETIFDPDSRIERSVRTIRENENAEN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S   + VT EQN+P  +       RSLE T+++EE  NYEI++K I T+ D Y+++RLSI
Sbjct: 300 SSAATPVTAEQNLPDENVEADGGERSLEETERREETVNYEISSKRIETSQDGYRVDRLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V++ RL   LG S  Q +I+  + EI  +V+++ G+   RGD + I+ +DF++    
Sbjct: 360 AVLVDRTRLAASLGGSPTQSQIEEQVREIEALVASSAGVTEERGDLVKISVVDFVDGGRD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                 +   + L R    +INAL  L  ++LV + GL           + +     +  
Sbjct: 420 LEPIPPIGVTEYLLRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQVSSEQAEMAEIG 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           L P  +  A          +        +     +L   +NS  +K +  +L  ++E NE
Sbjct: 480 LLPEGLEDAADAMDGETGFL--------MPPDHSDLLHDLNSKRNKSALKKLESLLEFNE 531

Query: 540 ERFAKILRKWARSEI 554
           E+ A ILR+W     
Sbjct: 532 EQSAAILRQWLYDTE 546


>gi|296447983|ref|ZP_06889889.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b]
 gi|296254493|gb|EFH01614.1| flagellar M-ring protein FliF [Methylosinus trichosporium OB3b]
          Length = 551

 Score =  366 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 193/553 (34%), Positives = 312/553 (56%), Gaps = 8/553 (1%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D+  Q   +   LG  ++  LA +  + + +     ++V+ P ++ LY  L+  DV+RI
Sbjct: 1   MDRFNQLRDNLIGLGPRKLSALALIFTLVLAITGLGAYYVSRPDFEVLYSGLDREDVSRI 60

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L  + + F I+  G+++ V      +AR+ LA +GLP S +N+GYELFDKV S GLT
Sbjct: 61  GAVLKSSGVAFDINPEGNAVLVRYGQTAQARMLLAERGLPQS-ANAGYELFDKVGSLGLT 119

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIV+PD GSFR++   P+ASV+IR  +P 
Sbjct: 120 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVLPDEGSFRRVRQPPSASVVIRTESPD 179

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEI 241
             K+A+AIRHLVAA++P + +  VTVL++ G LL+A++ +       K+L++ + +  +I
Sbjct: 180 DSKAAQAIRHLVAASIPGMTVDQVTVLNTDGMLLSASDGDATDAAPAKTLTLEKTVSKDI 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI + L  +L + NF+ +V A +N D +Q  E ++DP+S+VERS+R+ K+   S+ + 
Sbjct: 240 QDNIRRTLTPYLRLANFQVSVRARINTDRKQTNETIFDPESRVERSVRVVKENSTSQNNS 299

Query: 302 PESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              A +VE+N+P    +      +S +   K EE +N+E++TK++ T    Y LE LSIA
Sbjct: 300 TSQAASVERNVPQEKPQAGGEGKQSNDENKKSEELTNFELSTKTVTTVSGGYTLENLSIA 359

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+VN+G L      +     ++  L EI ++V++A G+   RGDT+ ++++DF  N+   
Sbjct: 360 VLVNRGSLAGSGKDAPKPEALERQLKEIEQLVASAAGVRKDRGDTVKVSAVDFAINENDL 419

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +      + + L+    +VINA   ++ TLL+ F GL    R    +     E      +
Sbjct: 420 APVEPAGWSEALTHQLGSVINAGALILVTLLLVFFGLRPASRALLAEAPAPMETALADDV 479

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
            PP + +  +         A     Q        L   I          +L  +IE +E 
Sbjct: 480 GPPLLGAEPSI----ELPFAPMEMPQFTGQMDTGLIEDIGGREKFNQQKKLEQLIEADEM 535

Query: 541 RFAKILRKWARSE 553
           + A IL++W  +E
Sbjct: 536 QAAAILKQWMYAE 548


>gi|300717231|ref|YP_003742034.1| flagellar basal-body M-ring protein [Erwinia billingiae Eb661]
 gi|299063067|emb|CAX60187.1| Flagellar basal-body M-ring protein [Erwinia billingiae Eb661]
          Length = 576

 Score =  366 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 121/553 (21%), Positives = 221/553 (39%), Gaps = 57/553 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  LY  L   D   I   L++ NI ++  D G ++ VP+  V + R+ LA
Sbjct: 44  MALWAKQPEYRVLYNNLSDEDGGAIITQLTQMNIPYQFDDKGGALMVPAEKVHELRLRLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +   RVH+ M
Sbjct: 104 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKNVRVHLAM 161

Query: 159 PDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    PTASV +              AI H+V+++V  L  G+VTV+D  G L
Sbjct: 162 PKPSLFVREQKSPTASVTLTLQPGRALDQGQISAIVHMVSSSVAGLPPGNVTVVDQAGHL 221

Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++   R++    L     +++  +  I   L   +G  N  + V A+++ + ++  +
Sbjct: 222 LTQSDNAGRDLNDAQLKYATDVENRFQSRIEAILNPIVGTGNVHAQVTAQIDFNAREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV------------ 320
             Y P+S        S+    S       P        N P  ++               
Sbjct: 282 EKYQPNSDPSTQAVRSRQTSDSEQIGGQYPGGVPGALSNQPAPANTAPVTTPAANNQNGQ 341

Query: 321 -------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                                 ++  +  + +  +NYE++   + T  +  +++RLS+AV
Sbjct: 342 NGQNGQNGNAAAANQGSSASTAKAGPSNTRTDNTTNYEVDRTILHTKMNVGEVQRLSVAV 401

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VVN                 D+ L +I  +   A G + +RGD++ + +  F   +  + 
Sbjct: 402 VVNYK----ADAAGKPIALTDAQLKQIENLTREAMGYSDKRGDSLNVVNSPFTVTEDTSD 457

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                            ++    +L+  ++   L    +R                   +
Sbjct: 458 DVP----FWKQPAFIDQMMELGRWLLVLIVAWILYRKLVRPQLRRKAE-------LEKAA 506

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               + A        D+    S ++D     R  Q R+++ V  Q   R+  M E +   
Sbjct: 507 VEAAAVAKQAREESGDDAVAVSLSKDEQDQERKSQHRMSAEVMSQ---RIRDMSENDPRV 563

Query: 542 FAKILRKWARSEI 554
            A ++R+W + E+
Sbjct: 564 VALVIRQWMKDEL 576


>gi|209547913|ref|YP_002279830.1| flagellar MS-ring protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533669|gb|ACI53604.1| flagellar M-ring protein FliF [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 563

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 292/564 (51%), Positives = 395/564 (70%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  SLGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EAN+DF++  +G+SISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +   N    +SL+IVQ +Q 
Sbjct: 180 ATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q +SA TVEQN+P  +        P S + +DK+EEQ+NYEIN+++ ATT ++YK+E+L
Sbjct: 300 KQSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A+GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  + + +        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P + A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  E  
Sbjct: 540 SRMVEINEERAAKILRKWAIDEAA 563


>gi|238912458|ref|ZP_04656295.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 560

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +   + ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRSTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|207856518|ref|YP_002243169.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206708321|emb|CAR32624.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 560

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQFFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|17548611|ref|NP_521951.1| flagellar M-ring transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17430859|emb|CAD17541.1| probable flagellar m-ring transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 611

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 125/554 (22%), Positives = 225/554 (40%), Gaps = 47/554 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAA
Sbjct: 65  MLWSRAPSYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP     +G+EL  +   FG + F++++   RALEGE+ARTIQ++  + +ARVH+ + 
Sbjct: 125 QGLPKGGL-AGFELM-ENQKFGTSQFVEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182

Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +P+ASV+++            +AI HL+A++VP+L + +VTV+D +G+LL
Sbjct: 183 KPSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLASSVPDLPLANVTVVDQSGRLL 242

Query: 218 TA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           +A   +    +    L+ V+ I+      I   L   +G DN R+ V A +++D  +   
Sbjct: 243 SASFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTANVDLDNTEQMA 302

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPE---SAVTVEQNMPHVSDRK------------- 319
             Y P+         S     S  ++            N P  + R              
Sbjct: 303 ETYRPNQDPANGAVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPAAQQAA 362

Query: 320 --------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                                    +   +  ++   NYE++     T      + RLS+
Sbjct: 363 AGQNGQNGQNGQQQGAAAGTGQAAANTAESSARDTTINYEVDKTVRRTRAAVGTVRRLSV 422

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN             +   D+ + ++N +V  A G +++RGD++ + +  F      
Sbjct: 423 AVVVNYRA-----DGKTWKPLSDAEMTKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPT 477

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   + +     +  +           +G L++ F  +  L R  N  D           
Sbjct: 478 SKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEPVTATFVGRE 537

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
              P               +   S   D       L     ++  +Q    +  + + N 
Sbjct: 538 GEDPNAPIITGAAAPAGPELEGPSVVTDGDEVPDELPQLKQNHDFEQKLETMRRVAQQNP 597

Query: 540 ERFAKILRKWARSE 553
              A ++++W  +E
Sbjct: 598 RAVAAVIKQWVSNE 611


>gi|227355980|ref|ZP_03840372.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906]
 gi|227163968|gb|EEI48870.1| flagellar M-ring protein [Proteus mirabilis ATCC 29906]
          Length = 573

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 131/587 (22%), Positives = 245/587 (41%), Gaps = 56/587 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +++Q   F      +     + L       I +F+AA  ++ SP Y  LY  L   D  
Sbjct: 7   DVVNQKKGFNAIINRIKADPKIPLIIAGSAAIAIFVAAFLWLQSPDYKVLYSNLSDKDGG 66

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ N+ +R+S NGS+I VP + V + R+ LA  GLP   + +G+EL DK   FG
Sbjct: 67  EIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQAGLPKGGA-AGFELLDKE-KFG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
           ++ F ++I   RALEGE+ARTI+++  +  ARVH+ +P    F +    P+ASV +    
Sbjct: 125 ISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238
                     AI H+VA++V  +   +VT++D +GKLLT  +   R++    L  VQ ++
Sbjct: 185 GRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELE 244

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              +  I   L   +G  N  + V A+++    +     Y P+    ++   SK   +SE
Sbjct: 245 SRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQVSQSE 304

Query: 299 TSQ---PESAVTVEQNMPHVSDRKV--------------------PLPRSLENTDKKEEQ 335
            +             N P    +                       + R+  +  + +E 
Sbjct: 305 QNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTAADEKATSTNANRSMTRNPNSNSRLDET 364

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG---------RSADQGKIDSYLA 386
           +NYE++ +          +ERLS+AV+VN   + +             +      D  L 
Sbjct: 365 TNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKATEGEEPIVENKQVPLTDEQLQ 424

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I  +V  A G +  RGD++++ +  F + +             IL++     ++   +L
Sbjct: 425 QIESLVREAMGYSQERGDSLSVVNSQFNDTEEPVISVPMWENPQILAK----ALDLGRWL 480

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           +  ++   L    ++         +       + +   ++  V    +  +         
Sbjct: 481 LLVIIAWILWRKLVKPQLEKRREAEVAAQKAILKTKLEVTDDVNEAELDEE--------- 531

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              S  +  + R+++ +  Q   R+  M E +    A ++R+W   E
Sbjct: 532 ---SRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMVIRQWMSKE 572


>gi|197285489|ref|YP_002151361.1| flagellar MS-ring protein [Proteus mirabilis HI4320]
 gi|194682976|emb|CAR43401.1| flagellar M-ring protein [Proteus mirabilis HI4320]
          Length = 573

 Score =  365 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 131/587 (22%), Positives = 245/587 (41%), Gaps = 56/587 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +++Q   F      +     + L       I +F+AA  ++ SP Y  LY  L   D  
Sbjct: 7   DVVNQKKGFNAIINRIKADPKIPLIIAGSAAIAIFVAAFLWLQSPDYKVLYSNLSDKDGG 66

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ N+ +R+S NGS+I VP + V + R+ LA  GLP   + +G+EL DK   FG
Sbjct: 67  EIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQAGLPKGGA-AGFELLDKE-KFG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
           ++ F ++I   RALEGE+ARTI+++  +  ARVH+ +P    F +    P+ASV +    
Sbjct: 125 ISQFSEQINYQRALEGELARTIETLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238
                     AI H+VA++V  +   +VT++D +GKLLT  +   R++    L  VQ ++
Sbjct: 185 GRALDEGQINAIVHIVASSVAGMPDSNVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELE 244

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              +  I   L   +G  N  + V A+++    +     Y P+    ++   SK   +SE
Sbjct: 245 SRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQVSQSE 304

Query: 299 TSQ---PESAVTVEQNMPHVSDRKV--------------------PLPRSLENTDKKEEQ 335
            +             N P    +                       + R+  +  + +E 
Sbjct: 305 QNGGMLAGGVPGALSNQPVAPPQAPIEKAKDTTADEKTTSTNANRSMTRNPNSNSRLDET 364

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG---------RSADQGKIDSYLA 386
           +NYE++ +          +ERLS+AV+VN   + +             +      D  L 
Sbjct: 365 TNYEVDRRIRHVKRPVGNIERLSVAVIVNYKTVEDKKKATEGEEPIVENKQVPLTDEQLQ 424

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I  +V  A G +  RGD++++ +  F + +             IL++     ++   +L
Sbjct: 425 QIESLVREAMGYSQERGDSLSVVNSQFNDTEEPVISVPVWENPQILAK----ALDLGRWL 480

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           +  ++   L    ++         +       + +   ++  V    +  +         
Sbjct: 481 LLVIIAWILWRKLVKPQLEKRREAEVAAQKAILKTKLEVTDDVNEAELDEE--------- 531

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              S  +  + R+++ +  Q   R+  M E +    A ++R+W   E
Sbjct: 532 ---SRRKQARQRVSAELQSQ---RIREMAEKDPRVVAMVIRQWMSKE 572


>gi|299131954|ref|ZP_07025149.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2]
 gi|298592091|gb|EFI52291.1| flagellar M-ring protein FliF [Afipia sp. 1NLS2]
          Length = 517

 Score =  365 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 119/533 (22%), Positives = 217/533 (40%), Gaps = 24/533 (4%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           + +V +  +  F      V +P    LY  L   D + +   L    I + + ++G+ I 
Sbjct: 1   MLAVTMALLGFFGFVILRVTAPQMVTLYTDLSYDDASGVMKELDRQGIPYELKNDGAIIM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP   V + R+ LA           GYE+FDK ++ G TSF+Q +  +RALEGE+ARTI+
Sbjct: 61  VPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDTLGSTSFVQNVNHLRALEGELARTIK 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204
           SI  I A RVH+V+PD   F +    P+A++++R       +   AIRHLVA++V  L  
Sbjct: 120 SIDRIQAVRVHLVLPDRPLFSREKPEPSAAIVVRVRGALEPQQVRAIRHLVASSVNGLKP 179

Query: 205 GDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
             V+++D  G+LL     +        +     A ++ +   I   + + +G    R  +
Sbjct: 180 QRVSIVDENGQLLADGSGDANGMGDVGADERRIAYENRLRKQIESIVTSVVGAGRARVQL 239

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322
            A+ + +        +DP+ +V RS +  +++  +   Q         N    + ++   
Sbjct: 240 SADFDYNKVTETSDKFDPEGRVLRSSQTREESSATSNGQNGQV--TVNNEMPGNQQQNAA 297

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
               + + K EE +NYEI+  +     +  +++R+S+AV+V+        G      +  
Sbjct: 298 NAGKDQSKKSEEINNYEISRTTKTEVTEAGRVQRVSVAVLVDGTYSKNEKGDMVYAPRSK 357

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF---MDILSRHFATV 439
             L  I  +V +A G    RGD + + ++ F E            +              
Sbjct: 358 EDLERIATLVRSAIGFEKNRGDQVDVVNLRFAEAPAAVPLPEPTGWLSVFQFTKDDVMYF 417

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           I   V  +  ++V F+ +  L +    +D     V       P                 
Sbjct: 418 IELGVMSLLAIVVVFMVVRPLVKRVLAEDPPPASVPALPEAEPA---------------- 461

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           A+        +      +++   V  QS  R+  + + N      I+R+W   
Sbjct: 462 AVAGPVHTAATAQMIDVAQVQGQVHAQSVHRVGELADRNPNETVSIIRQWLTE 514


>gi|78047554|ref|YP_363729.1| flagellar MS-ring protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035984|emb|CAJ23675.1| flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 574

 Score =  365 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 116/568 (20%), Positives = 232/568 (40%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S     +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +       +  LV  V  L + F  +    R    
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A K + G       P         ++  D+  +    +D     ++ ++ I    + +
Sbjct: 489 VTAVKDKQGKAGKDGTPQS---ADVRMVDEDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +RL    ++ + +R A++++ W  SE
Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573


>gi|90104474|gb|ABD86511.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18]
          Length = 547

 Score =  365 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 130/551 (23%), Positives = 230/551 (41%), Gaps = 19/551 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V    I  F      V +P    L+  L V D + I   
Sbjct: 9   VQGLVSFLKGLGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 69  LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGSTSFV 127

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 128 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 187

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMN 244
              AIRH+VA+AV  L    V+++D  G+LL            +         +  +   
Sbjct: 188 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRMRNQ 247

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++ ++  +    
Sbjct: 248 VEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAANDGQ 307

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 N    +        + + + K EE +NYEI+  +     +  ++ R+S+AV+V+
Sbjct: 308 V--TVNNELPGAQAGAGAAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVLVD 365

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G    Q +    L  I  +V +A G + +RGD + + ++ F E         
Sbjct: 366 GIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPVAE 425

Query: 425 Q---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
               +  +         VI   V ++  L+V F+ +  L R     +       G   L+
Sbjct: 426 PGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVRRILAAEPGAAGANGVPALT 485

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               ++           I  D         +    +++   V  QS  R+  + + N   
Sbjct: 486 DASGTA-----------IGPDGLPLVAPGPNMIDIAQVQGQVHAQSVHRVGELADRNPNE 534

Query: 542 FAKILRKWARS 552
            A I+R+W + 
Sbjct: 535 TAAIVRQWLQE 545


>gi|289666081|ref|ZP_06487662.1| flagellar MS-ring protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 574

 Score =  365 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 115/568 (20%), Positives = 232/568 (40%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++  +   +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312

Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N                  +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +       +  LV  V  L + F  +    R    
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A K + G       P         ++  D+  L    +D  S  ++ ++ I    + +
Sbjct: 489 VTAVKDKQGKAGKDGTPQS---ADVRMVDEDDELLPHMGEDTASIGQDRKTPIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +R+    ++ + +R A++++ W  SE
Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|16765307|ref|NP_460922.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|120326|sp|P15928|FLIF_SALTY RecName: Full=Flagellar M-ring protein
 gi|154023|gb|AAA27096.1| fliF flagellar M-protein precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16420504|gb|AAL20881.1| basal-body MS (membrane and supramembrane)-ring and collar protein
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261247135|emb|CBG24958.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993958|gb|ACY88843.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158483|emb|CBW17993.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912959|dbj|BAJ36933.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|332988858|gb|AEF07841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 560

 Score =  365 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +   + ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|21242698|ref|NP_642280.1| flagellar MS-ring protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108171|gb|AAM36816.1| flagellar protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 574

 Score =  365 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 116/568 (20%), Positives = 233/568 (41%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S     +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +       +  LV  V  L + F  +    R    
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A K + G       P         ++ +D+  +    +D     ++ ++ I    + +
Sbjct: 489 VTAVKDKQGKAGKDGTPQS---ADVRMVDDDDDLMPRLEEDTAQIGQDKKTPIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +RL    ++ + +R A++++ W  SE
Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573


>gi|224583532|ref|YP_002637330.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224468059|gb|ACN45889.1| flagellar M-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 560

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|86356297|ref|YP_468189.1| flagellar MS-ring protein [Rhizobium etli CFN 42]
 gi|86280399|gb|ABC89462.1| flagellar M-ring protein [Rhizobium etli CFN 42]
          Length = 563

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 290/564 (51%), Positives = 396/564 (70%), Gaps = 10/564 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+QL+Q FK+  +LGRTR++IL  V  V I + +AA  FVN P  + LYV L+  D+
Sbjct: 1   MNLLNQLVQIFKNFGALGRTRLMILGGVGSVSIAIILAAALFVNKPAQETLYVGLDAPDL 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+EANI+F++  +GSSI+VP+ M GKAR+ LA +GLP +S+N+GYELFD V S 
Sbjct: 61  NQISMALAEANINFQVGTDGSSITVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSISGI AARVHIVMP++G+FRK   +PTASVMIRA 
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRAS 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL + +   N    +SL+IVQ +Q 
Sbjct: 180 AATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E VYDP+SKVERS+R +K+AQ+S+ 
Sbjct: 240 EVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETVYDPESKVERSVRSTKEAQQSQQ 299

Query: 300 SQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            Q ++A TVEQN+P  +        P S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+L
Sbjct: 300 RQSDNATTVEQNIPQAAPDAGGSGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SIAVVVNKGR+ +++G  ADQ KID+YLAE++KIV++A GI+++RGD +T+T+MDFLENQ
Sbjct: 360 SIAVVVNKGRIAKMVGEPADQAKIDAYLAEMHKIVASAAGIDAKRGDVVTVTAMDFLENQ 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA------KK 471
           L    T  V  MD+LSR+ A +IN+L F+    +V ++GL  L R  + + +        
Sbjct: 420 LLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDAT 479

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E  G  +    P + A    LM          + +      +     N  V +  + +L
Sbjct: 480 PEAAGLELPDFAPAAGAAGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKL 539

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             M+EINEER AKILRKWA  +  
Sbjct: 540 ARMVEINEERAAKILRKWAIDDAA 563


>gi|29141395|ref|NP_804737.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213646788|ref|ZP_03376841.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|29137022|gb|AAO68586.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 560

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 226/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+   
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|291085209|ref|ZP_06352408.2| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
 gi|291072341|gb|EFE10450.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
          Length = 557

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 122/569 (21%), Positives = 228/569 (40%), Gaps = 49/569 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGAAAVAIVVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NVPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
             RALEGE+ARTI+++  +  ARVH+ +P    F +    P+ASV   +           
Sbjct: 132 YQRALEGELARTIETLGPVKRARVHLALPKPSLFVREQKAPSASVTVNLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D  G LLT +      +    L     ++  I+  I  
Sbjct: 192 SAVTHLVSSAVAGLPPGNVTLVDQAGHLLTQSNTSSRDLNDAQLKYASDVEGRIQRRIES 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS---ETSQPES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    +++  S+    S    +  P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGG 311

Query: 305 AVTVEQNMPHVSDRKV------------------PLPRSLENTDKKEEQSNYEINTKSIA 346
                 N P  ++                         +   + ++ E SNYE++     
Sbjct: 312 VPGALSNQPAPANTAPIATPPANQQNAQTTQTTNNSSNAGPRSTQRNETSNYEVDRTIRH 371

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T  +   ++RLS+AVVVN   L +              + +I  +   A G + +RGDT+
Sbjct: 372 TKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLTAEQMKQIEDLTREAMGFSDKRGDTL 427

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + +  F                         +++A  +L+  L+   L   A+R     
Sbjct: 428 NVVNSPFTATDDSMGELPLW----KQPFFIDQLMSAGRWLLVLLVAWILWRKAVRPQLLR 483

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              +      ++ +                +       ++D  +  R    R+ + V  Q
Sbjct: 484 RSEEAKAAQEQTRIR------------QETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
              R+  M + +    A ++R+W  ++ E
Sbjct: 532 ---RIREMSDNDPRVVALVIRQWMSNDHE 557


>gi|78224304|ref|YP_386051.1| flagellar FliF M-ring protein [Geobacter metallireducens GS-15]
 gi|78195559|gb|ABB33326.1| Flagellar FliF M-ring protein [Geobacter metallireducens GS-15]
          Length = 527

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/562 (21%), Positives = 235/562 (41%), Gaps = 48/562 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  +   +L   +  I+  V+ V I+ F       N   Y  L+  L   D   I 
Sbjct: 3   EGLKKLLEPFMALPPAKRWIVGGVVGVSIIAFALLIMVANRTDYRPLFTNLTTEDAGEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  + +RI+ +G +I VPS  V   R+ +A+ GLP      G+E+FD+ N FG+T 
Sbjct: 63  TKLKEQKVPYRIAADGKAILVPSDKVYDLRLTMASAGLPQGGG-VGFEIFDRKN-FGMTE 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182
           F+Q++   RAL+GE++RTI  I+G+  ARVH+ +P+   F++     TASV+++      
Sbjct: 121 FVQKLNYQRALQGELSRTIGQIAGVEQARVHLAIPEKALFKEDEKPATASVVLKVKGNRQ 180

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239
                 + + HLVA+++  ++   VTVLD  GKLL+ N   +    +      + +  + 
Sbjct: 181 LNDSDVQGVVHLVASSIEGMNPEHVTVLDQKGKLLSKNGPTDAAGKMTASMQEVQRTYER 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  +   L   +G     + V A  +    +  E  YDP++ V RS + S+++     
Sbjct: 241 GTEERLQSLLDKAVGSGKSVARVSAVFDFRQVERYEEKYDPET-VVRSEQRSEESMGGAN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +        + N+            +  N  K +E  NYE++  +  T      L ++S+
Sbjct: 300 ATA-GVPGAQTNLGRTPA--GAGGATGPNGSKNDETLNYEVSRSTARTIEPVGALSKVSV 356

Query: 360 AVVVNKGRLTEVLGR------SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           A++V+       +G+           +  + L +I  +V  A G N+ RGD +T+ ++ F
Sbjct: 357 AILVDGKYDAPAVGKDGKNAKPKYTPRSPAELQQIEALVKGAVGFNAVRGDQVTVANIPF 416

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            +     +      +   +   F +++   +   G L +    +  L ++   +     E
Sbjct: 417 QDTAEAGTDEGSQWWNAPI---FLSLLKNGLIGFGFLALLLFVVRPLMKMLKPEKKTSFE 473

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               +  +   I+                               R          + L++
Sbjct: 474 PISTAEETINQIAE----------------------------VHRAQIQNQTIRQVELMN 505

Query: 534 MIEINEERFAKILRKWARSEIE 555
            ++    + A+IL+ W R++ +
Sbjct: 506 KVKEEPYQAAQILQNWLRAKEQ 527


>gi|304398855|ref|ZP_07380725.1| flagellar M-ring protein FliF [Pantoea sp. aB]
 gi|304353559|gb|EFM17936.1| flagellar M-ring protein FliF [Pantoea sp. aB]
          Length = 575

 Score =  364 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 137/586 (23%), Positives = 231/586 (39%), Gaps = 57/586 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +   F      L     + L       I + +A   +   P Y  LY  L   D   I 
Sbjct: 11  QEKKGFGDLLARLRANPRIPLVIAAAAVIAIVIAMVLWAKQPSYSVLYNNLTDEDGGAIV 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R ++NG ++ VP + V + R+ LA QGLP   S  G+EL DK   FG++ 
Sbjct: 71  TQLTQMNIPYRFAENGGALMVPEANVHELRLRLAQQGLPKGGS-VGFELLDKE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE+ARTI+S+  + +ARVH+ MP    F +    P+ASV +       
Sbjct: 129 FSEQVNYQRALEGELARTIESLGPVKSARVHLAMPKPTLFVREQKAPSASVTLTLQPGRA 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                 +AI H+V+++V  L  G+VTV+D TG+LLT ++     +    L     ++   
Sbjct: 189 LDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRLLTRSDSAGRDLNDAQLKYSSEVEARY 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   L   LG  N  + V A++N DT +  +  Y P++    S   S+    S+ S 
Sbjct: 249 QQRIEAILNPILGQGNVHAQVTAQINFDTAEQTDEKYQPNANPSNSAIRSRQTSTSDQSG 308

Query: 302 ---PESAVTVEQNMPHV------------------------------SDRKVPLPRSLEN 328
              P        N P                                         S   
Sbjct: 309 SPYPGGVPGALSNQPAPANTAPVTTPNNNAANGQAANGQNNAANNASQTTSTAPASSGPT 368

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             ++++  NYE++     T  +   ++RLS+AVVVN         +       +  L +I
Sbjct: 369 NSRRDDTVNYELDRTIRHTKVNVGDVQRLSVAVVVN----FRADDKGKAVALNEQQLKQI 424

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G +  RGD+I + +  F   +   +              F  +++A  +L+ 
Sbjct: 425 EDLTREAMGYSQSRGDSINVVNSQFNTTEPVTTDLP----FWQQQSFFDQLMDAGKWLLV 480

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L+   L    +R       A +                       P +       ++D 
Sbjct: 481 ALVAFVLYRKMVRPHLVRKQAAEKAAAEAVAARAATD--------QPQEEAFNVQLSKDE 532

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               R   +R+++ V  Q   R+  M E +    A ++R+W   E+
Sbjct: 533 LDQERKSNNRMSAEVMSQ---RIRDMSENDPRVVALVIREWMSKEL 575


>gi|327394264|dbj|BAK11686.1| flagellar M-ring protein FliF [Pantoea ananatis AJ13355]
          Length = 572

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 129/548 (23%), Positives = 226/548 (41%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P+Y  L+  L   D   I   L++ N+ +R +DNG ++ VP   V + R+ LA Q
Sbjct: 47  LWAKTPNYSVLFSNLSNEDGGAIVTQLTQMNVPYRFADNGGALMVPEDKVHELRLRLAEQ 106

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP    N G+EL DK   FG++ F +++   RALEGE+ARTI+S+  +  ARVH+ MP 
Sbjct: 107 GLPK-GGNVGFELLDKE-KFGISQFSEQVNYQRALEGELARTIESLGPVKTARVHLAMPK 164

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +             +AI H+V+++V  L  G+VTV+D +G LLT
Sbjct: 165 PTLFVREQKAPSASVTLTLQPGRALDEGQIQAITHMVSSSVAGLPPGNVTVVDQSGHLLT 224

Query: 219 ANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            ++   R++    L     ++   +  I   L   LG  N  + V A++N DT +  +  
Sbjct: 225 RSDAVGRDLNDAQLKYAAEVEARYQQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEK 284

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSL-------- 326
           Y P+   + +   S+    SE S    P        N P  ++       +         
Sbjct: 285 YQPNGDPKNASIRSQQTSTSEQSGSPYPGGVPGALSNQPAPANTAPVNAPNTNAANGQNA 344

Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                                   ++++  NYE++     T  +   ++RLS+AVVVN  
Sbjct: 345 NGQNNAANGQRTSTASASSVPTNSRRDDTVNYELDRTIRHTKMNVGDVQRLSVAVVVNYR 404

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                  +       +  L +I  +   A G + +RGD++ + +  F   +   S     
Sbjct: 405 ----EDDKGKALALNEQQLKQIEDLTREAMGYSQQRGDSVNVVNSQFNTTEPTVSELP-- 458

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                    F  +I+A  +L+  L+   L    +R         +              +
Sbjct: 459 --FWQQQSFFDQLISAGKWLLVALVAFILYRKTVRPHVLRKKEAEKAAAEAMAARAAQQN 516

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                    +        ++D     R   +R+++ V  Q   R+  M E +    A ++
Sbjct: 517 ---------DQEAYSVQLSKDEMEQERKTNNRMSAEVMSQ---RIRDMSENDPRVVALVI 564

Query: 547 RKWARSEI 554
           R+W  +E+
Sbjct: 565 REWMGNEL 572


>gi|309779486|ref|ZP_07674247.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA]
 gi|308921727|gb|EFP67363.1| flagellar M-ring protein FliF [Ralstonia sp. 5_7_47FAA]
          Length = 610

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 124/569 (21%), Positives = 241/569 (42%), Gaps = 45/569 (7%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            L++       + +  AA  +  +P Y  LY  +  SD   I  AL + N+ +R ++ G+
Sbjct: 50  RLLMMIGGAALVAVIAAAMLWSRAPDYRVLYSNVSDSDGGAIIAALQQMNVPYRFAEGGT 109

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I VP + V +AR+ LA+QGLP     +G+EL  +   FG + F +++   RALEGE+AR
Sbjct: 110 AIMVPEASVHEARLKLASQGLPK-GGQAGFELM-ENQKFGTSQFTEQVNYQRALEGELAR 167

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAV 199
           TIQ++  + +ARVH+ M     F +  A+P+ASV+++            +AI HLV+++V
Sbjct: 168 TIQAMQEVQSARVHLAMTKPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSV 227

Query: 200 PNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           PNL + +VTV+D +G+LL++   +    +    LS V+ ++      I   L   +G DN
Sbjct: 228 PNLPLANVTVVDQSGRLLSSSFQDNASGLDPTQLSYVRDVEQGYIKRIEAILGPVVGEDN 287

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPH 314
            R+ V A++++D  +     Y P+     +   S     +  ++            N P 
Sbjct: 288 VRAQVTADVDLDNTEQMAESYRPNQDPANAAVRSTHTAEATQNKADAQGGVPGALSNQPP 347

Query: 315 VSDRKVPL------------------------------PRSLENTDKKEEQSNYEINTKS 344
            + R +P                                 S  ++  ++  +NYE++   
Sbjct: 348 TAPRMLPTAPAPASASQPAATGPNGQPQQVAAANTGGTAASGNSSSTRDTTTNYEVDKTV 407

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
             T      + RLS+AVVVN             +   ++ + ++N +V  A G +++RGD
Sbjct: 408 RRTRAAVGTVRRLSVAVVVNYR-----GDGKTWKPLSEAEMVKLNALVKDAVGFDAKRGD 462

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           ++ + +  F      +   + +     + ++       L   +G L++ F  +    R  
Sbjct: 463 SVNVVNSQFSGTLPMSKDDLPLWKQPDMIQYAIQAAKYLALAIGFLILVFAVIRPAIRSM 522

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
              DA             P               +   ++  D      +   ++ +   
Sbjct: 523 GEKDAPATPTFVGREGEDPNAPIITGAAASAGPELEGPAAGAD-SEELPDALPQLKNNDF 581

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
           ++    +  + + N    A ++++W  +E
Sbjct: 582 EKKLETMRRVAQSNPRAVAAVIKQWVSNE 610


>gi|322833196|ref|YP_004213223.1| flagellar M-ring protein FliF [Rahnella sp. Y9602]
 gi|321168397|gb|ADW74096.1| flagellar M-ring protein FliF [Rahnella sp. Y9602]
          Length = 569

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 118/547 (21%), Positives = 225/547 (41%), Gaps = 55/547 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  L+  L   D   I   L++ NI ++ SDNG ++ +P+  V + R+ LA
Sbjct: 44  MMLWAKQPTYKVLFSNLGDQDGGAIVTQLTQMNIPYQFSDNGGALLIPADKVYETRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A GLP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  + +ARVH+ +
Sbjct: 104 AAGLPKGGA-VGFELMDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVSSARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV   ++           AI ++V+++V  L   +VTV+D +G L
Sbjct: 162 PKPSLFVREQKNPSASVTLNLQPGRALDDGQINAIVYMVSSSVSGLPPANVTVVDQSGHL 221

Query: 217 LTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT ++     +    L     ++  ++  I   L   +G  N  + + A+++  +++  +
Sbjct: 222 LTQSDNNGRDLNASQLKYANEVEGRLQRRIESILQPVVGNGNVHAQITAQIDYASREQTD 281

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSL------ 326
             Y P+   +++   S+    S+               N P  +                
Sbjct: 282 ENYQPNGSADKAAVRSRQLSTSDQIGASSVGGVPGALSNQPAPAATAPVTNPPAANNANG 341

Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                                +  +++E +NYE++     T H    ++RLS AVVVN  
Sbjct: 342 TQNQTGNNAQNAATTANANVPSNRRRDETTNYEVDRTITHTQHSAGAVQRLSAAVVVNYQ 401

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +   +       D  L +I+ +V  A G +  RGDT+ + +  F E    +      
Sbjct: 402 VGPDGKAK----PLTDDQLKKIDDLVREAMGFSQERGDTLNVVNTPFNEAADDSGELP-- 455

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                    F  ++NA  +L+  ++   L    +R +     A+K      ++ +  P  
Sbjct: 456 --FWKQQAFFDQLLNAGRWLLVLIVAWLLWRKMVRPMLRKQQAEKDAAAAAALAATMPQP 513

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                  + ND +     +Q   S              +    R+  + + +    A ++
Sbjct: 514 EGSKPVKLSNDELEKRKRSQQRVS-------------VEVQTQRVQELADKDPRIVALVI 560

Query: 547 RKWARSE 553
           R+W  +E
Sbjct: 561 RQWMSTE 567


>gi|222033677|emb|CAP76418.1| flagellar M-ring protein [Escherichia coli LF82]
          Length = 552

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 235/577 (40%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAVQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D    LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGLHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +                      ++ A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           + + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 LGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|311279120|ref|YP_003941351.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1]
 gi|308748315|gb|ADO48067.1| flagellar M-ring protein FliF [Enterobacter cloacae SCF1]
          Length = 556

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 127/537 (23%), Positives = 219/537 (40%), Gaps = 48/537 (8%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  L+  L   D   I   L + NI +R +D+G +I VP+  V + R+ LA QG
Sbjct: 45  WAKSPDYRTLFSNLSDQDGGAIVTQLQQMNIPYRFADSGGAIEVPADKVHELRLRLAQQG 104

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  +  ARVH+ MP  
Sbjct: 105 LPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKGARVHLAMPKP 162

Query: 162 GSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +              A+ HLV++AV  L  G+VT++D  G LLT 
Sbjct: 163 SLFVREQKLPSASVTLNLEPGRALDEGQIAAVVHLVSSAVAGLPPGNVTLVDQAGHLLTQ 222

Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           +      +    L     ++  I+  I   L+  +G  N  + V A+LN D ++  E  Y
Sbjct: 223 SNTGARDLNDAQLKYASDVEGRIQRRIETILSPIVGNGNVHAQVTAQLNFDNKEQTEEQY 282

Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV--------------- 320
            P+    +++  S+    SE      P        N P  +                   
Sbjct: 283 RPNGDSSQAVLRSRQVNESEQIGSPYPGGVPGALSNSPAPAPNAPISTPPANQNNGQQQT 342

Query: 321 --PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                 S      + E SNYE++     T  +   ++RLS+AVVVN   L +        
Sbjct: 343 TSTTNASGPRNTSRNETSNYEVDRTIRHTKTNIGDVQRLSVAVVVNYKNLPDGK----PL 398

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +I  +   A G + +RGDT+ + +  F                         
Sbjct: 399 PLTADQMKQIEDLTREAMGYSDKRGDTLNVVNSQFSAGDETGGELP----FWKQQSFIDQ 454

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +++A  +L+  ++   L   A+R        +      ++ +      +           
Sbjct: 455 LMSAGRWLLVLIVAWLLWRKAIRPQLARRQEEAKVAQEEARVQREMADA----------- 503

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 ++D     R    R+++ V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 504 -VEVRLSKDEQHQQRRTNQRLSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 556


>gi|300696960|ref|YP_003747621.1| FliF: flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CFBP2957]
 gi|299073684|emb|CBJ53204.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum CFBP2957]
          Length = 616

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 125/558 (22%), Positives = 229/558 (41%), Gaps = 52/558 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL  +   FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +P+ASV+++            +AI HL++++VPNL + +VTV+D +G+LL+
Sbjct: 184 PSVFVREQVKPSASVLLKLYPGRMLDRSQVQAIGHLLSSSVPNLPLANVTVVDQSGRLLS 243

Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           +   +    +    L+ V+ I+      I   L   +G DN R+ V A++++D  +    
Sbjct: 244 SSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGEDNVRAQVTADVDLDNTEQMAE 303

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRK-------------- 319
            Y P+      +  S     S  S+            N P  + R               
Sbjct: 304 TYRPNQDPANGVVRSTHTSESTQSKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQAAA 363

Query: 320 -----------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                                       +   +  ++   NYE++     T      + R
Sbjct: 364 GQNGQNGQNGPNAQNGQQQGAATGQAATNNVESSARDTTVNYEVDKTVRRTRAAVGTVRR 423

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AVVVN             +   D+ + ++N +V  A G +++RGD++ + +  F   
Sbjct: 424 LSVAVVVNYRA-----DGKTWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGT 478

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEVG 475
              +   + +     +  +           +G L++ F  +  L R  N  +        
Sbjct: 479 LPTSKDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFV 538

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G+    P              +     +S  D  +    L     ++  +Q    +  + 
Sbjct: 539 GREGDDPNAPIITGAAAPAGPELEGPSASAADGNAVPEELPQLKQNHEFEQKLETMRRIA 598

Query: 536 EINEERFAKILRKWARSE 553
           + N    A ++++W   E
Sbjct: 599 QQNPRAVAAVIKQWVSIE 616


>gi|320085412|emb|CBY95193.1| Flagellar M-ring protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 560

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 227/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVASSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSNNSNNAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDDTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|319781672|ref|YP_004141148.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167560|gb|ADV11098.1| flagellar M-ring protein FliF [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 548

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 223/552 (40%), Positives = 327/552 (59%), Gaps = 8/552 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q+     +    G  R+ +LA + ++ + +   A  ++N P YD LYV L+ +DVN+I 
Sbjct: 3   EQIQSIISNLRGFGVKRLAMLAGIAVLVMGVIGIASVYLNRPAYDTLYVGLDRADVNQIG 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           + L EA I F +  +G+S+ VP+    +AR+ LA +GLP+S +N+GYELFD V S GLTS
Sbjct: 63  LVLGEAGIGFDVGADGTSVLVPAGTTAQARMLLAEKGLPTS-ANAGYELFDNVGSLGLTS 121

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FMQ+ITRVRALEGEIARTIQSISGI AARVHIVM +  +FR+   +P+ASV+IR      
Sbjct: 122 FMQQITRVRALEGEIARTIQSISGIKAARVHIVMSERANFRRDEQQPSASVVIRYAGIDA 181

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEM 243
            KSA +IRHLVAAAVP L    VTVLDS+G LL A +   N    ++L + Q ++ +I  
Sbjct: 182 EKSAMSIRHLVAAAVPGLSADKVTVLDSSGNLLAAGDDPSNTSAARTLGVEQTVEAQIGD 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           NI +AL A+LG DNFR++V AE+N DT+Q  E ++DP+S+VERS++  +  + +   Q  
Sbjct: 242 NIRRALTAYLGPDNFRASVKAEVNTDTRQTEETIFDPNSRVERSVQSVRANENNNQKQAS 301

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  +VEQN+P         P+S    D++EE +NYEIN+K IAT  + Y + ++SIAVVV
Sbjct: 302 TPASVEQNLPETQATATDGPQSSSQNDRREEITNYEINSKKIATVSNGYTVTKMSIAVVV 361

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N+ RLT +LG+ A   +I   +AEI K+V++ATG++ +RGD I +++++F++  L     
Sbjct: 362 NQQRLTTILGKDATPEQIAKRVAEIQKMVTSATGLDEKRGDIIDVSAVEFID-GLDGEAI 420

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            Q   +D + +H  T+INA  F+V   LV F GL  +        A          +   
Sbjct: 421 PQAGMLDSIGQHAGTMINAGAFIVVVFLVAFFGLRPMAAALTAKAAPALAGPSFDDVQRS 480

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             +             AL  +              +   +      RL  M+++NEER A
Sbjct: 481 LPTPEAMAATDNAAVGALPGTR-----PGPTPLDDLRQKIRPAPQDRLARMVDLNEERTA 535

Query: 544 KILRKWARSEIE 555
           +ILRKWA  E+ 
Sbjct: 536 QILRKWASQEVA 547


>gi|39995518|ref|NP_951469.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA]
 gi|39982281|gb|AAR33742.1| flagellar M-ring protein FliF [Geobacter sulfurreducens PCA]
 gi|298504518|gb|ADI83241.1| flagellar M-ring mounting plate protein FliF [Geobacter
           sulfurreducens KN400]
          Length = 527

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 125/563 (22%), Positives = 235/563 (41%), Gaps = 49/563 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  +   +L   +  ++  V+ + ++ F       N   Y  L+  L   D   I 
Sbjct: 3   EALNKLIQPFMALPPAKRWVVGGVVGLSVIAFTILILVANRTDYRPLFTNLTSEDAGEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  + +RI+ +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+T 
Sbjct: 63  TKLKEQKVPYRIAADGKAILVPSDKVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGMTD 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F+Q++   RAL+GE++RTI  ISG+  ARVH+V+P+   F++     TASV+++      
Sbjct: 121 FVQKLNYQRALQGELSRTISQISGVEQARVHLVIPEKSLFKEDEKPATASVVLKVKGQRQ 180

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239
                 + I HLVA+A+  ++   VTVLD  GKLL+ N   +    +      + +A + 
Sbjct: 181 LRENDVQGIVHLVASAIEGMNPEHVTVLDQKGKLLSKNTPGDAAGKMTASMQEVQRAYER 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  +   L   +G     + V A  +    +  E  YDP++ V    R  +    S  
Sbjct: 241 STEERLQSLLDKAVGAGKSVARVSAVFDFRQVERYEEKYDPETVVRSEQRSEEKQDGSTV 300

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +       V+ N+   + +            K +E  NYE++  +  T      L ++S+
Sbjct: 301 T--GGVPGVQTNLGRTAGQPAGTSGGG---SKNDETLNYEVSRATARTIEPVGTLSKVSV 355

Query: 360 AVVVNKGRLTEVLGR------SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           A++V+        G+           +    L +I+ +V ++ G N  RGD +T+ ++ F
Sbjct: 356 AILVDGKYDAAAAGKDGKEAKPKYTPRSPDELQKIDALVKSSVGFNVERGDQVTVVNIPF 415

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            +     +G     +   +   F +++   +   G L +    +  L +    + +   E
Sbjct: 416 QDTGDVGAGEADKWWNAPI---FLSLLKNGLIGFGFLALLLFVVRPLLKTLKPEKSTSFE 472

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                                          + +   +      R+       S + L++
Sbjct: 473 ----------------------------PIPSAEDALNQIAEIHRLQIGNQTVSQMELIN 504

Query: 534 MIEINEERFAKILRKWARSEIED 556
            I+    + A+I++ W R + E+
Sbjct: 505 KIKQEPYQAAQIIQNWLRDKGEE 527


>gi|118589973|ref|ZP_01547377.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
 gi|118437470|gb|EAV44107.1| flagellar M-ring protein [Stappia aggregata IAM 12614]
          Length = 548

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 207/553 (37%), Positives = 310/553 (56%), Gaps = 10/553 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R++ LA + L  I    A  ++++ P    LY  L+  DV
Sbjct: 1   MPGREHAEKLWANLMELGVRRLVALALIGLATIATVGAGAYYLSRPEQTVLYTGLDGEDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI  AL +A I F I+  G+++ V  +   KAR+ LA +GLP   +NSGYELFD++ S 
Sbjct: 61  TRIGSALRDAGIPFDINSEGTAVMVSHAQTAKARMLLAEKGLPR-GANSGYELFDELGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + GI AARVHIV+P+ GSFR+    P+ASV+IR+ 
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMKGIRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
            P   ++A+AIRHLVAA VP +    VTVLD++G +L A +         L+ +  A+ +
Sbjct: 180 VPDDVRTADAIRHLVAAGVPGMQADKVTVLDTSGGILAAGKDPTKASAGQLASLETAVSN 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ NI K L  +LG+DNF+ +V AELN D + I E ++DPDS+ ERSIR  ++ + ++ 
Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAAELNTDRKTIAETIFDPDSRTERSIRTIRENENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S   +  TVEQN+P          RS E  +++EE  NYEI++K I T+ D Y+++RLSI
Sbjct: 300 SSVSAPTTVEQNLPEEDVSADNGERSSEENERREETVNYEISSKRIETSQDGYRVDRLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V+K RL + LG    Q ++   L EI  +V+++ GI   RGD + +  +DF++    
Sbjct: 360 AVLVDKSRLAQSLGGEPTQAQMQEQLTEIEALVASSAGIEKERGDLVKVAVVDFVDGGRA 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                 +S  + L R    +INAL  L  ++LV + GL           AK      +  
Sbjct: 420 MEPIPPISITEYLMRQSGNIINALAILTVSMLVIWFGLRPAVAALVPQIAKPQVEMAELG 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           ++P      V                  +     ++   +NS  +K +  +L  ++E NE
Sbjct: 480 MTPETAEGTVEAVDGEQ--------TFLMPPDHSDMLQDLNSRRNKSALRKLESLLEFNE 531

Query: 540 ERFAKILRKWARS 552
           E+ A ILR+W   
Sbjct: 532 EQSAAILRQWLYE 544


>gi|238755308|ref|ZP_04616651.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473]
 gi|238706444|gb|EEP98818.1| Flagellar M-ring protein [Yersinia ruckeri ATCC 29473]
          Length = 574

 Score =  363 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 134/585 (22%), Positives = 246/585 (42%), Gaps = 59/585 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F      L     + L       + + +A   +  SP Y  LY  L   D   I 
Sbjct: 12  NRENGFTGLLNRLRANPKIPLLVAAAAAVSIVVALMLWAKSPDYRVLYSNLSDRDGGAIV 71

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R ++NG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 72  TQLTQLNIPYRFAENGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182
           F ++I   RALEGE++RTI+++  ++  RVH+ MP    F +    P+ASV +       
Sbjct: 130 FSEQINYQRALEGELSRTIETLGPVLNVRVHLAMPKPSLFVREQKSPSASVTLTLQPGRA 189

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     ++   
Sbjct: 190 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVEVRF 249

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  T++  +  Y P+ + E+    S+   +SE   
Sbjct: 250 QRRIESILAPMVGNGNVHAQVTAQVDFATREQTDEEYKPNQRPEQGAVRSQQLSQSEQVG 309

Query: 302 P---ESAVTVEQNMPHVSDRKV------------------------------PLPRSLEN 328
                       N P  +                                      ++  
Sbjct: 310 GTPIGGVPGALSNQPSATPAAPIETPAAPGATGAAANTATATPATRNTSAGTAGKNAVPG 369

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           + +++E +NYE++     T      ++RLS+AVVVN   + +  G+          LA+I
Sbjct: 370 SSRRDETTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYLGIDKKSGKPI--ALSKDQLAQI 427

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G +++RGDT+ + +  F E +  NS              F  V+NA  +L+ 
Sbjct: 428 EALTREAMGFSTQRGDTLNVVNTPFTEAEETNSALP----FWKSQSFFDQVLNAGRYLLI 483

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L+   L    +R L                +   P+ +A  T     +       + D 
Sbjct: 484 LLVAWILWRKLVRPLMAKK------------MEVNPVIAAAKTVAQTAEAAESAKQSNDE 531

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +  +  Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 532 LAQRKKSQQRVSAEVQAQ---RIRELADKDPRVVALVIRQWMSND 573


>gi|296103558|ref|YP_003613704.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058017|gb|ADF62755.1| flagellar MS-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 559

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 121/543 (22%), Positives = 221/543 (40%), Gaps = 51/543 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA
Sbjct: 42  MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 101

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ M
Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 159

Query: 159 PDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV   +            A+ HLV++AV  L  G+VT++D +G L
Sbjct: 160 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 219

Query: 217 LTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +    R++    L     ++  ++  I   L   +G  N  + V A+++   ++  E
Sbjct: 220 LTQSNTAGRDLNDAQLKYAADVEARLQRRIEAILGPVVGNSNVHAQVTAQIDFSNKEQTE 279

Query: 276 IVYDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320
             Y P+    +++  S+   + ++   + P        N P  ++               
Sbjct: 280 EQYRPNGDPAQAVMRSRQVNENEQVGGAYPGGVPGALSNQPAPANAAPISTPPANQQNGQ 339

Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                       +   T+ + E +NYE++     T  +   ++RLS+AVVVN   L    
Sbjct: 340 QNQQTTTSTASNAGPRTNSRNETTNYEVDRTIRHTKLNVGDIQRLSVAVVVNYKTLPNGK 399

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                       + +I  +   A G + +RGD++ + +  F                   
Sbjct: 400 ----PLPLTAEQMKQIEDLTREAMGYSEKRGDSLNVVNSPFNPVDETGGELP----FWQQ 451

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
                 +++A  +L+  ++   L    +R         +                     
Sbjct: 452 QAFIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRRAEAEKAA------------REQINA 499

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
               +       ++D     R    R+ + V  Q   R+  M + +    A ++R+W  +
Sbjct: 500 RQEVEEAVEVRLSKDEQMQQRRANQRMGAEVMSQ---RIREMSDNDPRVVALVIRQWMGN 556

Query: 553 EIE 555
           E E
Sbjct: 557 EHE 559


>gi|73538922|ref|YP_299289.1| flagellar MS-ring protein [Ralstonia eutropha JMP134]
 gi|72122259|gb|AAZ64445.1| Flagellar FliF M-ring protein [Ralstonia eutropha JMP134]
          Length = 568

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 113/582 (19%), Positives = 217/582 (37%), Gaps = 66/582 (11%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +    L     L L                +  +P Y  LY  L   D   +  +L + N
Sbjct: 13  EVLDRLKANPKLPLMLGGAALAAAIAVGVLWSRAPDYKVLYSNLSERDGGAVLQSLQQMN 72

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++ ++ G ++ VP+  V + R+ LA+QGLP S   +G EL D    FG++ F +++  
Sbjct: 73  VPYKFAEGGGAVMVPAEKVHETRLRLASQGLPKSG-TTGLELMDN-QKFGISQFAEQVNY 130

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSAE 189
            R LEGE+AR+I+SI+ + +ARVH+ +P    F +   +PTAS++++             
Sbjct: 131 QRGLEGELARSIESIAAVQSARVHLAIPKPTLFVRERQKPTASIVLQLYPGRAIDEGQVA 190

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           AI HLV+++VP L    ++++D  G LL+ +  ER +    L  VQA++      I   L
Sbjct: 191 AISHLVSSSVPELTPKAISIVDQHGNLLSNSGNERMLDATQLKYVQALEQNYLKRIESIL 250

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAV 306
              +G DN R+ V A+++    +  +  Y P+     +   S+    S       P    
Sbjct: 251 TPIVGKDNVRAQVTADVDFSIVEHTDESYKPNQDPTHAAIRSQQTSESNQQGATPPGGVP 310

Query: 307 TVEQNMPHVSDRKV----------------------------------PLPRSLENTDKK 332
               N P                                             +  +++++
Sbjct: 311 GALSNQPPAPATAPITTAQTPRAGQAPGQAGAPAQPQGAQAGQAQAATSTASTGPSSNRR 370

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           +   NYE++            + RLS+AVVVN  +  +  G+   Q    + LA+I  + 
Sbjct: 371 DSTVNYELDRTVRHVQQAPGGVRRLSVAVVVNYRQQADAKGKMVAQPLPPALLAQIENLT 430

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
               G ++ RGD+I + +  F       +  + +     +     T    L+  +  L  
Sbjct: 431 KETMGFSADRGDSINVVNSPFT-VDREVTPELPLWKQPEMIDLAKTGAGYLLLALLALFA 489

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
            F     + R +            ++     P        ++                  
Sbjct: 490 WFKIARPILRRYTTPPLPAPTPAAETTAELLPPEEPTNPEVLRL---------------- 533

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                   +   +     +    + +    A +++ W  +++
Sbjct: 534 --------AAKYESDLALVRDAAQRDPRLVASVIKNWIGNDL 567


>gi|87119487|ref|ZP_01075384.1| flagellar M-ring protein [Marinomonas sp. MED121]
 gi|86164963|gb|EAQ66231.1| flagellar M-ring protein [Marinomonas sp. MED121]
          Length = 551

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 112/555 (20%), Positives = 222/555 (40%), Gaps = 31/555 (5%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +       L   R L L   +   I + +AA  + + P Y  +   +   + ++I   LS
Sbjct: 16  ELLTGFNKLTVIRQLALMVGLAASIAIGLAAILWTDGPEYKPVLSSITDYNADQIVEVLS 75

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
             NI F++ +N  ++ V +    +AR+ LA  G+ +  +  G E+ D+    G + F++ 
Sbjct: 76  INNIPFKLDENTGALLVEADQYHQARLKLAGSGIVND-TIVGMEIMDQEQGLGTSQFVEG 134

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186
               R LEGE++RTI S+  I +ARVH+ +P    F +   +P+ASV +           
Sbjct: 135 TRYRRGLEGELSRTISSLQSIKSARVHLAIPKESVFVRDTRKPSASVFLEMYPGRRLDRS 194

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244
             +AI +LV++++  L    VTV+D  G LL+  E    +   GK     + ++  +   
Sbjct: 195 QVDAIVNLVSSSISQLSAKSVTVVDQRGTLLSEKETSSELSVAGKQFDYTRKVEDVLLSR 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +N  L   +G D F++ V  +++  + +  +  Y+PD    RS +   +++   T     
Sbjct: 255 VNSILGPVVGADRFKAEVSTDVDFTSVEQTDEQYNPDLLALRSEQTLNESRNGTT--NSG 312

Query: 305 AVTVEQNMPHVS------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                 N P  +                    ++E   N+E++     T      + RLS
Sbjct: 313 IPGSLTNQPPGAITAPEVANSAGAASGTNGESRQETTRNFELDRSISYTRRQQGTIRRLS 372

Query: 359 IAVVVNK-GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +AVVV+    +             D  L+ +  +V  A G +S RGD++++ +  F   +
Sbjct: 373 VAVVVDDLVSIDPETSELVRTPWSDDELSRLTLLVRDAVGYDSARGDSVSVINSPFAVPE 432

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +      +       F ++I   +     L++  + +  + +          +    
Sbjct: 433 PLPTPEELPFYQ---QEWFLSLIQPTLVGFFVLILLMVVVRPILKTLG------EQNKIA 483

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                     A  T  + +D ++L S+   +   S     R            +  +I  
Sbjct: 484 VAEDAEASIFADETDEISDDQVSLVSAEDIMVPGSPEKIER--------QLNAIRGLIAE 535

Query: 538 NEERFAKILRKWARS 552
             ER A+++++W   
Sbjct: 536 EPERVAQVVKQWVMD 550


>gi|237731986|ref|ZP_04562467.1| flagellar MS-ring protein [Citrobacter sp. 30_2]
 gi|226907525|gb|EEH93443.1| flagellar MS-ring protein [Citrobacter sp. 30_2]
          Length = 557

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 228/569 (40%), Gaps = 49/569 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGAAAVAIIVAMVLWAKAPDYRTLFSNLSDQDGGAIVTQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NVPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
             RALEGE+ARTI+++  +  ARVH+ MP    F +    P+ASV   +           
Sbjct: 132 YQRALEGELARTIETLGPVKRARVHLAMPKPSLFVREQKAPSASVTVNLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D  G LLT +      +    L     ++  ++  I  
Sbjct: 192 SAVTHLVSSAVAGLPPGNVTLVDQAGHLLTQSNTSSRDLNDAQLKYASDVEGRVQRRIES 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS---ETSQPES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    +++  S+    S    +  P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDDSQAVLRSRQLNVSEQIGSGAPGG 311

Query: 305 AVTVEQNMPHVSDRKV------------------PLPRSLENTDKKEEQSNYEINTKSIA 346
                 N P  ++                         +   + ++ E SNYE++     
Sbjct: 312 VPGALSNQPAPANTAPIANPPANQQNAQTTQTANNSNNAGPRSTQRNETSNYEVDRTIRH 371

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T  +   ++RLS+AVVVN   L +              + +I  +   A G + +RGDT+
Sbjct: 372 TKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLTADQMKQIEDLTREAMGFSDKRGDTL 427

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + +  F                         ++ A  +L+  L+   L   A+R     
Sbjct: 428 NVVNSPFTATDDSMGELP----FWKQPFFIDQLMTAGRWLLVLLVAWILWRKAVRPQLVR 483

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              +   V  ++ +                +       ++D  +  R    R+ + V  Q
Sbjct: 484 RSEEAKAVQEQTRIR------------QETEEAVEVRLSKDEQTQQRRTNQRLGAEVMSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
              R+  M + +    A ++R+W  ++ E
Sbjct: 532 ---RIREMSDNDPRVVALVIRQWMSNDHE 557


>gi|162136034|ref|YP_530830.2| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18]
          Length = 539

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 130/551 (23%), Positives = 230/551 (41%), Gaps = 19/551 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V    I  F      V +P    L+  L V D + I   
Sbjct: 1   MQGLVSFLKGLGAARLMAMIAVTAALIGFFAFVIMRVTTPQMTTLFTDLSVEDSSGIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGSTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMN 244
              AIRH+VA+AV  L    V+++D  G+LL            +         +  +   
Sbjct: 180 QVRAIRHVVASAVNGLKPQRVSIVDEAGQLLADGAAGDPASDGATGDERRAGFEKRMRNQ 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   +++ +G    R  + A+ + +        +DP+ +V RS +  +++ ++  +    
Sbjct: 240 VEAIVSSVVGSGRARVQLTADFDYNKVTQTSDKFDPEGRVLRSSQSREESSQTAAANDGQ 299

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                 N    +        + + + K EE +NYEI+  +     +  ++ R+S+AV+V+
Sbjct: 300 V--TVNNELPGAQAGAGAAVARDQSKKSEETNNYEISRVTKTEITEAGRVNRISVAVLVD 357

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G    Q +    L  I  +V +A G + +RGD + + ++ F E         
Sbjct: 358 GIYGKNDKGEMVYQERSKDQLDRIAALVRSAIGFDQKRGDQVEVVNLRFAEAPSVPPVAE 417

Query: 425 Q---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
               +  +         VI   V ++  L+V F+ +  L R     +       G   L+
Sbjct: 418 PGGLLGMVQFTKDDVMYVIELAVMMLLGLVVMFMVIRPLVRRILAAEPGAAGANGVPALT 477

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               ++           I  D         +    +++   V  QS  R+  + + N   
Sbjct: 478 DASGTA-----------IGPDGLPLVAPGPNMIDIAQVQGQVHAQSVHRVGELADRNPNE 526

Query: 542 FAKILRKWARS 552
            A I+R+W + 
Sbjct: 527 TAAIVRQWLQE 537


>gi|167561148|ref|ZP_02354064.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 490

 Score =  363 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 194/443 (43%), Gaps = 15/443 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G ++ VP++ V + R+ LA+ G
Sbjct: 50  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAVLVPANQVHETRLKLASIG 109

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ + +ARVH+ +P  
Sbjct: 110 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINTVRSARVHLAIPKP 167

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 168 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 227

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 228 TASASGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYG 287

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   +++   S+    +     S          N P             +   P +   
Sbjct: 288 PNGAPQQTAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 347

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q      LA+I
Sbjct: 348 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLTAEKLAQI 407

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 408 QQLVKDAMGYDEKRGDSVNVVNSAFSTAADPFADLPWWRQPDMIELGKDIAKWLGVAAAA 467

Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471
             L       ALRR         
Sbjct: 468 AALYFMFVRPALRRAFPPPAEPA 490


>gi|114319870|ref|YP_741553.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226264|gb|ABI56063.1| flagellar M-ring protein FliF [Alkalilimnicola ehrlichii MLHE-1]
          Length = 580

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 123/557 (22%), Positives = 223/557 (40%), Gaps = 20/557 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q             L LA V+L  +   +    +   P Y  L+ +L+  D   +   
Sbjct: 38  MDQLEGLFGGRQNVMRLGLAVVLLFTVAAGVLLYLWAQEPSYRTLFSELDDQDAAAVIEQ 97

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  I +R+ +   ++ VPS  V  AR+ LAA+GLP   +  G+E+  + ++FG + FM
Sbjct: 98  LEEQGIPYRLDERTGAVRVPSDQVHPARLQLAAEGLPR-GTGFGFEMLQEDSAFGTSEFM 156

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184
           +     RALE E+AR+I ++  + AARVH+ +P    F +   +P ASV++         
Sbjct: 157 EGARFDRALETELARSIGTLRQVDAARVHLALPRESVFVRDRRQPRASVVVNLAQGRRLN 216

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEM 243
            +  +AI H+VA++VP+L   +V+V+D  G+LLT +E                ++     
Sbjct: 217 DEQVDAIVHMVASSVPDLAHENVSVVDERGRLLTRDEGRGLASTAGQFQYKTQVEETYVR 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I   LA  +G +  R+ V A L+   QQ  E +YDPDS+V RS  L     +       
Sbjct: 277 RIEDLLAPLVGRNRVRAQVNASLDFSEQQRTEELYDPDSRVIRSEALQGRRTQQGADAAM 336

Query: 304 SAVTVEQNMPHVSDRKVPL---PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                  N P  + +                  E  NYEI+            ++R+S+A
Sbjct: 337 GVPGALTNQPPGAGQLDGEEAPENPPPVDISSSETRNYEISRTLRQVRDPIGSIQRVSVA 396

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVV++   T+  G +  +   D  +  IN +V  A G ++ RGD++ + +  FLE +   
Sbjct: 397 VVVDERITTDEEGNTVREPLSDEEMDRINALVQEAVGFDAARGDSVNVVNAAFLEEEPVE 456

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +                 +I   +  +  + +    +  + +                  
Sbjct: 457 AMPPVPLLE---REWVRELIRFAIAALAFIALLLFVVRPMIKGMQRQ----------RDQ 503

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +    +S     L         +      ++ + L + +     +        ++    E
Sbjct: 504 ALRAPASEEQARLAQQGGGGGAAQLAGPDANEQALLAGVQHKPYEAKLEAAKKLVNDEPE 563

Query: 541 RFAKILRKWARSEIEDR 557
             A +++ W   +   R
Sbjct: 564 LAANVIKSWLAEDDGKR 580


>gi|300693364|ref|YP_003749337.1| flif: flagellar biosynthesis protein, m-ring protein, belongs to
           the flif family [Ralstonia solanacearum PSI07]
 gi|299075401|emb|CBJ34696.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Ralstonia solanacearum PSI07]
          Length = 611

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 127/554 (22%), Positives = 232/554 (41%), Gaps = 47/554 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  +P+Y  LY  +  SD   I  AL + N+ +R +D GS+I VP + V +AR+ LAA
Sbjct: 65  MLWSRTPNYGVLYSNVADSDGGAIIAALQQMNVPYRFADGGSAIMVPEANVHEARLKLAA 124

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP     +G+EL  +   FG + F +++   RALEGE+ARTIQ++  + +ARVH+ + 
Sbjct: 125 QGLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALS 182

Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +  A+P+ASV+++            +AI HLV+++VPNL + +VTV+D +G+LL
Sbjct: 183 KPSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLL 242

Query: 218 TA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           ++   +    +    L+ V+ I+      I   L   LG DN R+ V A++++D  +   
Sbjct: 243 SSSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVLGEDNVRAQVTADVDLDNTEQMA 302

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL---------- 322
             Y P+      +  S     S  ++            N P  + R +P           
Sbjct: 303 ETYRPNQDPSNGVVRSTHTSESTQNKAGAQGGVPGALSNQPPSAPRMLPTAPAPASQQAA 362

Query: 323 ----------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                                   +   +  ++   NYE++     T      + RLS+A
Sbjct: 363 AGQNGQNGQNGQQQAAAATGQTAANGVESSARDTTINYEVDKTVRRTRAAVGTVRRLSVA 422

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN     +       +   D+ + ++N +V  A G +++RGD++ + +  F       
Sbjct: 423 VVVNYRADGKA-----WKPLSDAEMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLPVA 477

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              + +     +  +           +G L++ F  +  L R  N  D            
Sbjct: 478 KDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKDEHAAATFVGREG 537

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN-SYVSKQSDLRLLHMIEINE 539
             P               +   S+        +    ++  ++  +Q    +  + + N 
Sbjct: 538 EDPNAPIITGAAAPAGPELEGPSAASAQGDEVQIEVPQLKMNHDFEQKLETMRRIAQQNP 597

Query: 540 ERFAKILRKWARSE 553
              A ++++W  SE
Sbjct: 598 RAVAAVVKQWVSSE 611


>gi|283785708|ref|YP_003365573.1| flagellar M-ring protein [Citrobacter rodentium ICC168]
 gi|282949162|emb|CBG88770.1| flagellar M-ring protein [Citrobacter rodentium ICC168]
          Length = 560

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 123/572 (21%), Positives = 223/572 (38%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  SP Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPKIPLIIAGSAAVAIIVAMVLWAKSPDYRTLFSNLSDQDGGAIVTQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFTEGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
             RALEGE+ARTI+++  +  ARVH+ MP    F +    P+ASV   +           
Sbjct: 132 YQRALEGELARTIETLGPVRRARVHLAMPKPSLFVREQKSPSASVTINLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G+LLT +      +    L     +++ I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGRLLTQSNTSSRDLNDAQLKYASDVENRIQRRIES 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEQYRPNGDASQAALRSRQVNESEQIGSGLPGG 311

Query: 305 AVTVEQNMPHVSDRKV---------------------PLPRSLENTDKKEEQSNYEINTK 343
                 N P  ++                                  ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPANAAPITTPPANQQNAQNGQNAQQTSTNNAVGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   ++RLS+AVVVN    ++              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIQRLSVAVVVNYKTPSDGK----PLPLTADQMKQIENLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F      N+G V             +    L+ L+   L+    +    + 
Sbjct: 428 DTLNVVNSPFSATD-ENAGEVPFWKQQFFIEQLFSAGRWLLVLLVGWLLWRKAVRPQLQR 486

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
              +     E       +   +   ++         A      ++ S             
Sbjct: 487 RAEEAKAAREREQLRQETKEAVEVRLSKDEQTQQQRANQRLGAEVLSQ------------ 534

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 R+  M + +    A ++R+W  ++ E
Sbjct: 535 ------RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|146312175|ref|YP_001177249.1| flagellar MS-ring protein [Enterobacter sp. 638]
 gi|145319051|gb|ABP61198.1| flagellar M-ring protein FliF [Enterobacter sp. 638]
          Length = 565

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 219/549 (39%), Gaps = 57/549 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  +   D   I   L++ NI +R +DNG +I VP+  V + R+ LA
Sbjct: 42  MVLWAKSPDYRTLYSNVSDQDGGAIVTQLTQLNIPYRFADNGGAIEVPADKVHELRLRLA 101

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F ++I   RALEGE+ARTI+++  +  ARVH+ M
Sbjct: 102 QQGLPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELARTIETLGPVKTARVHLAM 159

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              A+ HLV++AV  L  G+VTV+D +G L
Sbjct: 160 PKPSLFVREQKNPSASVTVTLEPGRALDEGQISAVTHLVSSAVAGLPTGNVTVVDQSGHL 219

Query: 217 LTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +      +    L     ++  I+  I   L   +G  N  + V A++N D ++  E
Sbjct: 220 LTQSNTSSRDLNDAQLKYANDVEGRIQRRIEAILGPIVGSSNIHAQVTAQINFDNKEQTE 279

Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKV------------ 320
             Y P+    +++  S+    +       P        N P  ++               
Sbjct: 280 EQYSPNGDAAQAVMRSRQLNTTEQIGGQNPGGVPGALSNQPAPANSAPISTPPANQQNGQ 339

Query: 321 --------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                             S      + E +NYE++     T  +   ++RLS+AVVVN  
Sbjct: 340 QNGQQNNQQQQTTSTAASSGPRNSSRNETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYK 399

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
            L +              + +I  +   A G   +RGD++ + +  F             
Sbjct: 400 TLPDGK----PLPLTTDQMKQIEDLTREAMGFTEKRGDSLNVVNSPFTATDETGGELP-- 453

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                       +++A  +L+  ++   L   A+R        +                
Sbjct: 454 --FWQQQSFIEQMLSAGRWLLVLIVAWLLWRKAIRPQLTRRAEEAKAA------------ 499

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
             + +     +       ++D  +  R +  R+ + V  Q   R+  M + +    A ++
Sbjct: 500 QEMMSARQDIEEAVEVRLSKDEQTQQRRVNQRLGAEVMSQ---RIREMSDNDPRVVALVI 556

Query: 547 RKWARSEIE 555
           R+W  ++ E
Sbjct: 557 RQWMSNDHE 565


>gi|152980320|ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille]
 gi|151280397|gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp.
           Marseille]
          Length = 585

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 121/588 (20%), Positives = 217/588 (36%), Gaps = 66/588 (11%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            +   F         R ++L       I + +A   +   P Y  L+      D   I  
Sbjct: 24  NMQNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEYKVLFSNFSDRDGGAIMS 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           +L  +N+ ++ ++ G +I VP+  V + R+ LAA+GLP      G+EL  +    G++ F
Sbjct: 84  SLQASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGG-VGFELM-ENQKLGVSQF 141

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183
           ++++   RALEGE+AR+IQS+  + AARVH+ MP    F +   +PTASV++        
Sbjct: 142 LEQVNFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQKPTASVLLNLRQGRAL 201

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQAIQHE 240
             +   AI HLVA++VP L   +VT++D +G LL+          +    L  VQ +Q  
Sbjct: 202 DQQQVSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNTLDPSQLKYVQELQQS 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           I   I   +   +G  N R+   A+++  T +    +Y P+     +   S     S  +
Sbjct: 262 ITKRIESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPNSATVRSLQTSESRGN 321

Query: 301 QPE--SAVTVEQNMPHVSDRKVPLPRS--------------------------------- 325
                       N P  +                                          
Sbjct: 322 GTGASGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGTPAAAAAAAAAATAAA 381

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
                +K+  +N+E++            L+RLS+AVVVN  R+    G+       ++  
Sbjct: 382 NATPTQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVAKDGKVTIAPLSETEK 441

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I  +V  A G N  RGDT+ + +  F   +        +     +          L  
Sbjct: 442 NQITDLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERPEIIEMAIQAAKYLAI 501

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
            +   L+        R+L      K      + +      + A+    +  D   +   N
Sbjct: 502 GIVLFLLY-------RKLLKPMLNKLNPPPPEPLALEDESAEALEKMHLEEDGKPMGIQN 554

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                              +Q+      +   + +  A I++ W  ++
Sbjct: 555 T-----------------YQQNLEAAKELARKDPKVVANIVKSWVGND 585


>gi|254502238|ref|ZP_05114389.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
 gi|222438309|gb|EEE44988.1| flagellar M-ring protein FliF [Labrenzia alexandrii DFL-11]
          Length = 538

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/552 (24%), Positives = 246/552 (44%), Gaps = 17/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    +   +LG  RI  + +V  + + +F    F V +P    LY +L + D   I   
Sbjct: 1   MNGLIEFIKTLGPARIAAMGAVAAILVGVFAFIIFRVTAPQMTTLYNELTLEDSAAIVSQ 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + F+++  G+SI VP   V + R+ LAA+GLP+  S  GYE+FD+ ++ G TSF+
Sbjct: 61  LESQGVQFKLAREGASIMVPQEQVARLRMQLAAEGLPTGGS-IGYEIFDRSDTLGATSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RA+EGE++RTI S+  I +ARVH+V+P+   F++    P+AS+++         
Sbjct: 120 QNINHLRAMEGELSRTISSLDRIRSARVHLVIPERQLFQRDRRPPSASIVLNVRGGLGPG 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEM 243
              A++HLVA AV  LD   V+++D +G+LL +   ++ E  +  +      AI+  +  
Sbjct: 180 EIRAVQHLVATAVDGLDPDKVSIVDESGRLLASGASSDDEGMVSARLQERSTAIESRLRN 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            + + L + +G    R  V A+++ +        +DP+ +V RS +  ++A  S      
Sbjct: 240 QVEEILNSVVGPGRARVRVNADIDFNRLTETTETFDPEGQVVRSTQSKEEATSSTRQD-- 297

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P+    +       + +   EE  NYEI+  +     +  ++ RLS+AV+V
Sbjct: 298 GQVTVGNELPNADANQNNDAEEQDTSSLTEEIVNYEISRSTRTEVVEAGRITRLSVAVLV 357

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +    T+  G S    +    L  I  +V +A G +  RGD + + ++ F      +   
Sbjct: 358 DGTYQTDEDGNSIYTPRAQEALDRIAVLVRSAVGFDEARGDVVEVINLQFALPPELDIA- 416

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                 D             V  +  +L+    +  L R     + ++          P 
Sbjct: 417 EPDGLFDFTRSDIMRFAELGVLFLIAILLLLFVVRPLLRRIVTPEERQ----------PQ 466

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
            +       L+ +  +  +   +D F      Q++    +   S  ++  MI  +     
Sbjct: 467 ELVIGPDGTLVADSEVPKEEEEEDEFVIEWLEQAKQEGALQASSIAKVGEMISDHPTEAV 526

Query: 544 KILRKWARSEIE 555
            I+R W   +  
Sbjct: 527 NIVRGWLDEQAA 538


>gi|166712032|ref|ZP_02243239.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 574

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 112/568 (19%), Positives = 229/568 (40%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++  +   +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312

Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N                  +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +       +  LV  V  L + F  +    R    
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQY----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
               K +         P         ++ +++  L    +D  S  +  +  I    + +
Sbjct: 489 VTPIKEKQRKGGNDDTPQN---ADVRMVDDEDSLLPQMGEDTASIGQERKPAIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +R+    ++ + +R A++++ W  SE
Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|62180544|ref|YP_216961.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128177|gb|AAX65880.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715020|gb|EFZ06591.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 560

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 228/572 (39%), Gaps = 52/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L +G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPLGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 532 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 560


>gi|161613462|ref|YP_001587427.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161362826|gb|ABX66594.1| hypothetical protein SPAB_01179 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 531

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/542 (22%), Positives = 219/542 (40%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +    R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313
           Y P+    ++   S+    SE      P        N P                     
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             +        +     ++ E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F                    
Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        +      ++ +             
Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVR------------ 472

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +       ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|83309602|ref|YP_419866.1| flagellar MS-ring protein [Magnetospirillum magneticum AMB-1]
 gi|82944443|dbj|BAE49307.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Magnetospirillum magneticum AMB-1]
          Length = 574

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 145/555 (26%), Positives = 256/555 (46%), Gaps = 7/555 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +  F +    LG  R+  +A V +  +  F+     V +P  + LY  L++ D  +I 
Sbjct: 20  DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 79

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I + +  +G+ + VP       R+ +A Q LP+    +GYELFDK ++ G TS
Sbjct: 80  EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 139

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182
           F Q IT VRALEGE+++TI+SI  + AARVH+V+P   +F +    P+ASV+I+      
Sbjct: 140 FQQNITMVRALEGELSKTIRSIDRVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGAQR 199

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240
                  AI+HL+AAAVP +    ++++D  G LL              +  +    + +
Sbjct: 200 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEEMKVKTEAK 259

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I   L   LG    R+ V  +++M      E  +DP++KV RS     + ++S+ +
Sbjct: 260 LVKTIEDLLERSLGPGRVRAEVTVDMDMSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 319

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           +P + VTV+QN+P  +       R+    +K +E  NYEI+ K+ +T  +  ++ ++S A
Sbjct: 320 EP-TPVTVQQNLPDPNASSSGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 378

Query: 361 VVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           V+V+  R     G+    + +    L++I  +V +A G    R D + + SM F + +  
Sbjct: 379 VIVDGVREQSADGKQTSYRERTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 438

Query: 420 NSGTVQVSFMDILSRHF-ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                   F+  + R F   + + L   V  +L   L L  L          +    G+ 
Sbjct: 439 LQAEEPGEFIFGMRRDFVEKIASNLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGRR 498

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +L+    +    TG       A     +++ +       ++   V   S  ++  ++E +
Sbjct: 499 LLTTDGGAMPQLTGPGAAAMPAPLGGEEEVIADELIDIDKVEGRVKASSIRKIGEIVEKH 558

Query: 539 EERFAKILRKWARSE 553
            E    I+R W   E
Sbjct: 559 PEEALSIIRNWLYQE 573


>gi|161511085|ref|NP_773639.2| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110]
          Length = 537

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 133/549 (24%), Positives = 227/549 (41%), Gaps = 18/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         +G  R   + +V    +  F      V +P    L+  L V D + I   
Sbjct: 1   MQGLADFLKGIGAARFGAMIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + + G+ I VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIQFELRNEGTIIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I AARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELARTIRAIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AIRHLVA+AV  L    V+++D  G+LL                    +  +   + 
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVE 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             +++ +G    R  + A+ + +        +DP+ +V RS +  ++   S T+     V
Sbjct: 240 DIVSSVVGSGRARVQLSADFDFNKITQTSDKFDPEGRVLRSTQTREE--SSMTADNNGQV 297

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV   +P           + + + K EE +NYEI+  +     +  ++ R+S+AV+V+  
Sbjct: 298 TVNNELPGNQQN--NGVAAKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGI 355

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G  A Q +    L  I  +V +A G + +RGD + + ++ F +           
Sbjct: 356 YSKNDKGELAYQDRTKEQLDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIAEPS 415

Query: 427 SFMDILS---RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            F+ +L          +   V ++  L+V F+ +  L +     D     + G       
Sbjct: 416 GFLGMLQFTKDDVMYFVELGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSGPAA 475

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
              +A   G                 + S    + I   V  QS  R+  + E N     
Sbjct: 476 SDEAAPAAGQAL----------LPGGAASAIDVATIQGQVHAQSVHRVGELAERNPNETV 525

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 526 AIIRQWLTE 534


>gi|254470345|ref|ZP_05083749.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
 gi|211960656|gb|EEA95852.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
          Length = 528

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 139/530 (26%), Positives = 238/530 (44%), Gaps = 9/530 (1%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPS 87
           +  + I LF        +P    L+  L + D   I   +    + + +  NG S+ VP 
Sbjct: 1   MAALLIGLFSFIIVRATAPQMVPLFTDLTLEDAAAIVSQVESQGVSYELGVNGRSVLVPQ 60

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
             V + R+ LA  GLP S    GYE+FDK ++ G TSF+Q + R RALEGE++RTI+SI 
Sbjct: 61  ENVHRLRMTLAEAGLP-SGGGVGYEIFDKTDTLGATSFVQNLNRTRALEGELSRTIRSIG 119

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
            I +ARVH+V+P+   F++    PTAS+ I+           AI+HLVA AV  L+   V
Sbjct: 120 RIASARVHLVIPEKQLFQRDREPPTASIAIKVQGSLTNGQIRAIQHLVATAVEGLEPSYV 179

Query: 208 TVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           +++D  G LL   T ++               ++  +   + + L   +G    R  V A
Sbjct: 180 SIVDERGTLLASGTGDKEGLAGGSSLDERRLTMESRLRQQVEEILNNVVGTGRARVRVAA 239

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           E+N + +   + ++DPD +V RS +  ++   S   +   +V    N    +D       
Sbjct: 240 EINYNRKTETQELFDPDGQVLRSSQSKEENASSTNGEDTVSVG---NQLPNADAAGSSAG 296

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
           S ++++  EE  NYEI+  ++   ++   LERLS+AV+V+    T   G    Q +    
Sbjct: 297 SKDSSNVSEEILNYEISKSTVTEIYEAGGLERLSVAVLVDGTYTTSEDGTQTYQPRSREE 356

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           L +I  +V  A G +  RGDT+ + +M F+E  L +    +    D             V
Sbjct: 357 LEQIATLVRTAVGFSKHRGDTVEVVNMRFVEAPLSDFADGEGGLFDFTRADIMKFAELGV 416

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI--ALD 502
             V T+L+    +  L +     D +         +   P  + VT      + I   ++
Sbjct: 417 LFVITVLLLIFAVSPLMKRILAKDDEPEAAIEGGGVQMLPDGTLVTESPAQVEGIVGEME 476

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +   +I +      +++ + + + S  ++  MIE +      I+R W   
Sbjct: 477 AVPTEIPTAEWIEDAKMQAALHQSSIKQISEMIEDSPSEAVNIVRGWLNE 526


>gi|39648187|emb|CAE26707.1| putative flagellar M-ring protein [Rhodopseudomonas palustris
           CGA009]
          Length = 522

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/535 (25%), Positives = 228/535 (42%), Gaps = 21/535 (3%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           + + +V +  +  F      V+ P    LY  L V D + I   L    I F + ++G+ 
Sbjct: 1   MAMIAVTVALVGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKELERQGIPFEMRNDGAI 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + VP   V + R+ LA           GYE+FDK ++ G TSF+Q I  +RALEGE++RT
Sbjct: 61  LLVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFVQNINHLRALEGELSRT 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           I++I  + AARVH+V+P+   F +    P+AS+++R       +   AIRHLVA+AV  L
Sbjct: 120 IRAIDRVQAARVHLVLPERPLFSREAPEPSASIVLRVRGALEPQQVRAIRHLVASAVNGL 179

Query: 203 DMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
               V+++D  G+LL              S     A +  +   I   +++ +G    R 
Sbjct: 180 KPQRVSIVDEAGQLLADGSASGEQVEGATSDERRAAFEKRMRNQIEGIVSSVVGSGRARV 239

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V A+ + +        +DP+ +V RS +  ++   + TS  +  VTV   +P  +  + 
Sbjct: 240 QVSADFDYNKITQTSDKFDPEGRVLRSSQTREE--SAATSAADGQVTVNNELPGAN--QG 295

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               + + + K EE +NYEI+  +     +  ++ RLS+AV+V+        G      +
Sbjct: 296 QGAGARDVSKKSEETNNYEISRVTKTEVTEAGRVNRLSVAVLVDGAYTKNDKGELVYAER 355

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV---SFMDILSRHFA 437
               L  I  +V +A G + +RGD I + ++ F E                         
Sbjct: 356 PKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPEPAGLMGMFQFTKDDIM 415

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +I   V  +  L+V F+ +  L +     +      GG   L+   +            
Sbjct: 416 NMIQLGVMFLLGLVVLFMVIRPLVKRILAAEPAPEAAGGLPALADGTVP----------- 464

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            I  D         S    +++   V  QS  R+  + E N    A I+R+W   
Sbjct: 465 QIGADGQPVPASVPSMIDIAQVQGQVHAQSVHRVGELAERNPNETAAIIRQWLAE 519


>gi|321224614|gb|EFX49677.1| Flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 531

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/542 (22%), Positives = 220/542 (40%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +    R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313
           Y P+    ++   S+    SE      P        N P                     
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             +        +   + ++ E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F                    
Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        +      ++ +             
Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVR------------ 472

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +       ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|326622865|gb|EGE29210.1| flagellar M-ring protein FliF [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 531

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/542 (22%), Positives = 219/542 (40%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +    R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313
           Y P+    ++   S+    SE      P        N P                     
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             +        +     ++ E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNSAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F                    
Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+R        +      ++ +             
Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVR------------ 472

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +       ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|89899361|ref|YP_521832.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118]
 gi|89344098|gb|ABD68301.1| flagellar M-ring protein FliF [Rhodoferax ferrireducens T118]
          Length = 588

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 114/566 (20%), Positives = 213/566 (37%), Gaps = 43/566 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             +  + L + + L +   ++V + + +          +  LY  L   D   I   L+ 
Sbjct: 41  LSQRFSGLDQGQRLRMGLGLVVFVAIGIIGLMMGRQAEWRVLYANLADKDGGAIVAQLTT 100

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ +D G +I VP+  V   R+ LA+QGLP   + +G+E  D    FG+T F + +
Sbjct: 101 MNVPYKYADGGGAILVPADKVYDTRLRLASQGLPK-GAVAGFETMDAN-RFGMTQFQERL 158

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 159 AFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLVSLNAGRTLDRAQ 218

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQAIQHEIEM 243
              I HLV+++VP ++   V+VLD +GKLL+      +  G    + L  VQ ++     
Sbjct: 219 LAGIVHLVSSSVPEMNASAVSVLDDSGKLLSTPPEGADGAGGGDAQQLQYVQQLEQLYSR 278

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS--- 300
            I   L   +G  N R+ V AEL+    +     + P+   + S   S+    S      
Sbjct: 279 RILDILEPVVGRGNARAQVTAELDFSQTESTSESHKPNQTPDSSAIRSQQVSESSNGSGI 338

Query: 301 --QPESAVTVEQNMPHVSDRKVPLPRSLENTD-----------KKEEQSNYEINTKSIAT 347
              P        N P               T            ++E   NYE++      
Sbjct: 339 SGPPSGVPGATSNKPPGPSSAPINGAPQTLTAAGAGASAGAGGRRESIINYEVDKTVKVV 398

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 ++R+S AVVVN   +T+  G++         + ++  +V    G N  RGD++ 
Sbjct: 399 RGGTGIVKRISAAVVVNHQSVTDAKGKTTTTPLSAQQIEQMTALVRETVGFNKERGDSVN 458

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F   +      +       +     ++   L  L+   LV    +    +     
Sbjct: 459 LMNAPFT-TERVVPVDLPFWKQSEIQDLARSLAWPLGTLLFGALVLLGVIRPALKTL--- 514

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                                ++      + I  ++  +   +              + +
Sbjct: 515 ---------------AQSQPRISASSHQLNAIESEAPERAQLAAPARSSELAGPTSGELA 559

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
                 +   N    A I++ W   E
Sbjct: 560 LDDARKLTRDNPAAVANIVKTWINGE 585


>gi|308187290|ref|YP_003931421.1| Flagellar M-ring protein [Pantoea vagans C9-1]
 gi|308057800|gb|ADO09972.1| Flagellar M-ring protein [Pantoea vagans C9-1]
          Length = 575

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 136/586 (23%), Positives = 237/586 (40%), Gaps = 57/586 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +   F      L     + L       + + +A   +   P Y  LY  L   D   I 
Sbjct: 11  QEKKGFGDLLARLRANPRIPLIVAAAAVVAIVIAMVLWAKQPSYSVLYNNLTDEDGGAIV 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R ++NG ++ VP + V + R+ LA QGLP   S  G+EL DK   FG++ 
Sbjct: 71  TQLTQMNIPYRFAENGGALIVPEANVHELRLRLAQQGLPKGGS-VGFELLDKE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE+ARTI+S+  + +ARVH+ MP    F +    P+ASV +       
Sbjct: 129 FSEQVNYQRALEGELARTIESLGPVKSARVHLAMPKPTLFVREQKAPSASVTLTLQPGRA 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEI 241
                 +AI H+V+++V  L  G+VTV+D TG+LLT ++   R++    L     ++   
Sbjct: 189 LDEGQIQAIAHMVSSSVAGLPPGNVTVVDQTGRLLTRSDNAGRDLNDAQLKYSSEVEARY 248

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   L   LG  N  + V A++N DT +  +  Y P++    +   S+    S+ S 
Sbjct: 249 QQRIEAILNPILGQGNVHAQVTAQINFDTSEQTDEKYQPNANPSNTAIRSRQTSTSDQSG 308

Query: 302 ---PESAVTVEQNMPHVSDRKVPLPR------------------------------SLEN 328
              P        N P  ++                                     S   
Sbjct: 309 SPYPGGVPGALSNQPAPANTAPVTTPNNNAANGQNANGQNNAANNASQTTSTAAASSAPT 368

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             ++++  NYE++     T  +   ++RLS+AVVVN         +       +  L +I
Sbjct: 369 NSRRDDTVNYELDRSIRHTKVNVGDVQRLSVAVVVN----FRADDKGKAVALNEQQLKQI 424

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G +  RGD++ + +  F   +   +              F  ++NA  +L+ 
Sbjct: 425 EDLTREAMGYSQTRGDSVNVVNSQFNTTEAVTADLP----FWQQQSFFDQLMNAGKWLLI 480

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L+   L    +R                +  +     +A      P +       ++D 
Sbjct: 481 ALVAFILYRKLVRPHL--------VRKQAAEKAAAEAVAARAAAQQPEEEAFNVQLSKDE 532

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               R   +R+++ V  Q   R+  M E +    A ++R+W   E+
Sbjct: 533 LDQERKSNNRMSAEVMSQ---RIRDMSENDPRVVALVIREWMSKEL 575


>gi|213053157|ref|ZP_03346035.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|289829461|ref|ZP_06547073.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 531

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 122/542 (22%), Positives = 218/542 (40%), Gaps = 52/542 (9%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +    R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313
           Y P+    ++   S+    SE      P        N P                     
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             +        +     ++ E SNYE++     T  +   +ERLS+AVVVN   L +   
Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK- 371

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      + +I  +   A G + +RGDT+ + +  F                    
Sbjct: 372 ---PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQ 424

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                ++ A  +L+  ++   L   A+         +      ++ +             
Sbjct: 425 SFIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------ 472

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +       ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++
Sbjct: 473 QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSND 529

Query: 554 IE 555
            E
Sbjct: 530 HE 531


>gi|58582224|ref|YP_201240.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624117|ref|YP_451489.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576784|ref|YP_001913713.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188576976|ref|YP_001913905.1| flagellar MS-ring protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426818|gb|AAW75855.1| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368057|dbj|BAE69215.1| flagellar protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188521236|gb|ACD59181.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521428|gb|ACD59373.1| flagellar M-ring protein FliF [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 112/568 (19%), Positives = 230/568 (40%), Gaps = 28/568 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F   +SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVSSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++PN+    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPNITPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++  +   +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312

Query: 301 QPESAVTVEQN--------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N                  +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQATAAAAPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +       +  LV  +  L + F  +    R    
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGALVVLALLFGVVRPTLRQLTG 488

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
               K +         P         ++ +++  L    +D  S  +  +  I    + +
Sbjct: 489 VTPIKEKQRKGGNDGTPQS---ADVRMVDDEDSLLPHMGEDTASIGQERKPAIALPDAYE 545

Query: 527 SDLRL-LHMIEINEERFAKILRKWARSE 553
             +R+    ++ + +R A++++ W  SE
Sbjct: 546 ERMRVAREAVKADSKRVAQVVKGWVASE 573


>gi|56384261|gb|AAV85779.1| FliF [Azospirillum brasilense]
          Length = 521

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 150/519 (28%), Positives = 255/519 (49%), Gaps = 10/519 (1%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           +++P  + LY +L+ ++   I+  L EA + F +   G+ I V +  VG  R+ +AA GL
Sbjct: 4   LSTPEMELLYAELQPTEAAAIAKKLEEAKVPFTVDKTGTKIMVAAEQVGPTRMRMAAAGL 63

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P S  + GYELFDK   FG TSFMQ I  +RALEGE+ART+Q+++G+ +ARVH+V+P   
Sbjct: 64  P-SGGSIGYELFDKGEGFGATSFMQNINHLRALEGEMARTVQTLNGVQSARVHLVLPKRE 122

Query: 163 SFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--- 217
            F +     TAS+   +R       ++ +AI+HL+AA+VPNLD   ++++D  G LL   
Sbjct: 123 LFARQQNPATASIFIKLRPGAQLSRENIQAIQHLIAASVPNLDPSRISIVDDKGTLLARG 182

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T N+    +L  +     A +  +   I   L   +G    R+ V A+L+ D    +  +
Sbjct: 183 TGNDSADAMLASAEEKKVAYESRVARIIEDLLGRTVGYGKVRAEVSADLDFDRITTQSEI 242

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           +DP+S+V RS +   +A  S    P S VTV+QN+P         P S    ++ EE  N
Sbjct: 243 FDPESQVVRSTQTVTEANESHDRDPLSPVTVDQNLPTAQSGNNAGPISQNKQNRSEETIN 302

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396
           YEI+  +     ++ ++ RLS+AV+V+        G   A Q + +  L  I  +V +A 
Sbjct: 303 YEISRTTKNHVRESGQVRRLSVAVLVDGTYSLPRDGNPAAYQPRPEQELESIKALVRSAV 362

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+++ RGDT+ + +M F   +       ++ F+ +       +   +V  +  +L+  L 
Sbjct: 363 GLDAVRGDTLEVINMRFWSPEDDVQKPEEL-FLGMTKDDLFRIAEMVVLGIVAVLIILLV 421

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRN 514
           +  L         ++ E     +L+      A           ++AL+++  D       
Sbjct: 422 IRPLITRAFEKADQQEEDDMDRLLADQSGMPAALAAPTGALAQDLALEAAQADEELEQMI 481

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +R+   V   S  ++  ++E + E    ILR W   E
Sbjct: 482 DINRVEGRVRASSLRKVGEIVEKHPEEAVSILRNWLYQE 520


>gi|226941278|ref|YP_002796352.1| FliF1 [Laribacter hongkongensis HLHK9]
 gi|226716205|gb|ACO75343.1| FliF1 [Laribacter hongkongensis HLHK9]
          Length = 571

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 113/579 (19%), Positives = 230/579 (39%), Gaps = 44/579 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
               ++ +  +   +L   + L+L   +     + +AA  +   P Y  L+  L   +  
Sbjct: 11  TFQQRVREALERYRALPGNKKLLLFGGMAAVASILVAAYLYTREPAYKVLFSNLPDREGG 70

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +++ AL++ N+ ++++ +G  I VP+  V   R+ LA++GLP +S   G+EL D    FG
Sbjct: 71  QVTEALTKLNVPYQLA-DGGVIRVPAEQVYSTRLKLASEGLPKASG-IGFELMDN-QKFG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F +++   RA+EGE+ARTI+++  + +ARVH+ MP    F +    PTASV++    
Sbjct: 128 ISQFAEQVNYQRAVEGELARTIEALGVVESARVHLAMPKQSVFVREQQLPTASVLLNLRP 187

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIVQ 235
                      IR+LVA+AVP L   ++T++D  G L++      +    +  + L  V+
Sbjct: 188 GFILDAGQIAGIRNLVASAVPGLPQKNITIVDQEGNLISRMPDMEDGSAGLSRRQLDYVR 247

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            I+  +   I   L   +G  N R+ V A ++    +     ++P++        S+   
Sbjct: 248 QIETSLTKRIEAILEPIVGSGNARAQVTAAVDFSEVEQTAETFNPNTPPNAGAIRSQQTS 307

Query: 296 RSE---TSQPESAVTVEQNMPHV-----------------SDRKVPLPRSLENTDKKEEQ 335
            S+    +          N P                           ++      KE  
Sbjct: 308 ESQTREEAPQGGVPGALSNQPPNAAAAPVTLPPGTQAGLMPAPNGQQNQARPVKSSKEAT 367

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           +NYE++            L+R++ AVVVN  R T   G +      +  + +++K+V  A
Sbjct: 368 TNYEVDRTIQHVRQQTGALKRVTAAVVVNFKRTTTADGNAKMTPLSEQEMQQLDKLVREA 427

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G    RGD++ + +  F +     +   Q    D  S +   ++  ++  +  L + F 
Sbjct: 428 MGFTQARGDSVQVVNASFADTAGSKAAL-QDRLFDYASNNPGEILKWVLGALVVLYLLFG 486

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            +  + R            G  +  +     +      + +                   
Sbjct: 487 VIRPVVRDIVKPKPVLPPPGSDAAAAEGEGVAGEGGMTLEDLANL--------------D 532

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +              ++  +    A+I+++W  ++ 
Sbjct: 533 PKELARREYDSMLEGARQVVRADPRMAAQIIKEWVNNDE 571


>gi|114330758|ref|YP_746980.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91]
 gi|114307772|gb|ABI59015.1| flagellar M-ring protein FliF [Nitrosomonas eutropha C91]
          Length = 547

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 123/566 (21%), Positives = 212/566 (37%), Gaps = 47/566 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +          L   + L L       I LF     +  +P Y  LY  L   +   I 
Sbjct: 12  KKAFSQLDKIKQLPAQKKLGLMVAAAAVIALFAGTWLWSQTPDYRVLYANLSEQEGGAII 71

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL + N+ ++ S++  SI VP + V + R+HLA QGLP   + SG+E+  +   FG + 
Sbjct: 72  DALQKMNVPYQFSESSGSILVPVNQVHEVRLHLAGQGLPK-GNLSGFEIL-ENQKFGSSQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++++   RALEGE+AR+IQS+S +  ARVH+ +     F +   +P+ SV++       
Sbjct: 130 FLEQVNYQRALEGELARSIQSLSAVQGARVHLAIARPSVFTRERQQPSVSVLLNLHHGRM 189

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQH 239
              +   AI HLV++++P+L + +VTV+D  G LL+  +  +   G     L  VQ ++ 
Sbjct: 190 LSPEQVSAIVHLVSSSIPDLTVKNVTVVDQQGNLLSGQKENQMETGLDPGQLKYVQDMEQ 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS---IRLSKDAQR 296
                I   L    G DN  + V A+++    +  E  Y P++  E S       K    
Sbjct: 250 NFVRRIEAILTPVTGQDNVHAQVTADIDFSRIERSEETYRPNNNPEESAAVRSQQKSESV 309

Query: 297 SETSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348
           S +           N P    +             ++     +KE  +NYE++       
Sbjct: 310 SISQPDGGVPGALSNRPPAPAQAPVETKEGQEETAQTTPTDTRKESTTNYEVDKTISHIR 369

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               ++ RLS AVVVN        G   ++      + +I  +V  A G +  RGDT+T+
Sbjct: 370 QSTGQINRLSAAVVVNYRTRMNEEGNPINEPLSGEEIEKITALVKQAIGFSEARGDTLTV 429

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           T+  F   +            D          +    L+   +V F      R       
Sbjct: 430 TNSQFRLKEEILEELPLWKDPDT----VLLAKDIGKQLLIAAIVLFFLQKIFRPFLKNLL 485

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                    ++ +                                   + I     +Q+ 
Sbjct: 486 PPPPPAPVPALTAKDSEQDEAA-------------------------INTIKVMTLEQNL 520

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
            +   +        A +++ W     
Sbjct: 521 EKARLLAANEPAIVANVVKGWVSGNE 546


>gi|207728374|ref|YP_002256768.1| flagellar m-ring protein [Ralstonia solanacearum MolK2]
 gi|206591620|emb|CAQ57232.1| flagellar m-ring protein [Ralstonia solanacearum MolK2]
          Length = 614

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 125/556 (22%), Positives = 230/556 (41%), Gaps = 50/556 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  LY  +  SD   I  AL + N+ +R +D  S+I VP + V + R+ LAAQ
Sbjct: 66  LWSRAPDYRVLYSNVADSDGGAIIAALQQMNVPYRFADGDSAIMVPEANVHEVRLKLAAQ 125

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL  +   FG + F +++   RALEGE+ARTIQ++  + +ARVH+ +  
Sbjct: 126 GLPKGGL-AGFELM-ENQKFGTSQFAEQVNYQRALEGELARTIQAMQEVQSARVHLALSK 183

Query: 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +  A+P+ASV+++            +AI HLV+++VPNL + +VTV+D +G+LL+
Sbjct: 184 PSVFVREQAKPSASVLLKLYPGRMLDRSQVQAIGHLVSSSVPNLPLANVTVVDQSGRLLS 243

Query: 219 A--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           +   +    +    L+ V+ I+      I   L   +G DN R+ V A++++D  +    
Sbjct: 244 SSFQDNASGLDPTQLNYVRDIEQGYIKRIEAILGPVVGDDNVRAQVTADVDLDNTEQMAE 303

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322
            Y P+      +  S     S  ++            N P  + R +P            
Sbjct: 304 TYRPNQDPANGVVRSTHTSESTQNKAGAQGGVPGALSNQPPTAPRMLPTAPAPASQQAAA 363

Query: 323 ------------------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                                     +   +  ++   NYE++     T      + RLS
Sbjct: 364 GQNGQNGQNAPNGQQQAAAAAGQAATNSVESSARDTTVNYEVDKTVRRTRAAVGTVRRLS 423

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVN             +   D+ + ++N +V  A G +++RGD++ + +  F     
Sbjct: 424 VAVVVNYRA-----DGKTWKPLSDADMVKLNALVKDAVGYDAKRGDSVNVVNSQFSGTLP 478

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA-KKGEVGGK 477
            +   + +     +  +           +G L++ F  +  L R  N  +        G+
Sbjct: 479 MSRDDLPLWKQPEMIHYAIQAAKYGALAIGFLILVFAVIRPLIRSMNKKEELATATFVGR 538

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
               P              +     +S  D  +    L     ++  +Q    +  + + 
Sbjct: 539 EGDDPNAPIITGAAAPAGPELEGPSASAADGNAVPEELPQLKQNHEFEQKLETMRRIAQQ 598

Query: 538 NEERFAKILRKWARSE 553
           N    A ++++W   E
Sbjct: 599 NPRAVAAVIKQWVSIE 614


>gi|288962688|ref|YP_003452982.1| flagellar M-ring protein [Azospirillum sp. B510]
 gi|288914954|dbj|BAI76438.1| flagellar M-ring protein [Azospirillum sp. B510]
          Length = 579

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 171/574 (29%), Positives = 269/574 (46%), Gaps = 28/574 (4%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
               +  SLGR R+L+LA   L  ++        ++ PH   LY  LE ++  RI+ A+ 
Sbjct: 7   SLIDTLRSLGRGRLLVLAGTGLGIVLAVAGMALLLSQPHMTALYSGLEPAEAGRIAKAVQ 66

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           E  +      +G++ISVP + V + R+ LA +GLPS     GYELFD     G+TSFMQ 
Sbjct: 67  EMGVPVNAGFDGTTISVPQADVSRVRMALAEKGLPSRGG-VGYELFDTDKPLGITSFMQR 125

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYK 186
           I R+RA+EGE+ RTI+++SG+ AARVHIV+P+   F +   +PTASV++R         K
Sbjct: 126 INRLRAMEGELGRTIETLSGVEAARVHIVLPEREEFSRSAPKPTASVVVRMRGRAAMDRK 185

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEIEMNI 245
            A +IRHLV+AAVPNL    VTV+DS+G+LL   +    +       +  A +  +   +
Sbjct: 186 QALSIRHLVSAAVPNLKPSAVTVMDSSGELLLTEDDGPGLASARTDGLRVAAETRVARAV 245

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + L A LG  N R  V AE+    + +R   +DP+S+V RS +  ++ +RS+ S  E  
Sbjct: 246 EQMLTARLGAGNVRVQVAAEVETKREVVRSQSFDPNSQVVRSTQTVQEQERSQDSNGEPP 305

Query: 306 VTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           VT EQN+P      +   P+S  +T ++EE  NYEI+  S  T  +   + RLS+AV+VN
Sbjct: 306 VTAEQNLPQRDVRAQSQGPQSSNDTKRQEETVNYEISNVSRETVIEPGDVRRLSVAVLVN 365

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
               T   G    + +    L  + ++V +A G +  RGD +T+ +++F++     +   
Sbjct: 366 GTWKTAPDGTRQYEPRSTEELRRLGELVRSAMGFSEARGDRVTVDNLEFVDLAPDLTPRP 425

Query: 425 -QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                 + L+R+  T+I  ++ LV + LV  +GL  L R                 L+ P
Sbjct: 426 LGDEIAETLTRNIMTLIQWVILLVLSALVILVGLRPLIRRVFPAPGPVAAEASAPALAAP 485

Query: 484 PISSAVT----------------------TGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                                                        +           +  
Sbjct: 486 AGGPMPQLTGPAIAGAGAAGLAPADAGEAEAAAFGAAPMAPQLGIEETMDQLIELRTVEG 545

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            V   S  RL  +++   +    ILR W   E+ 
Sbjct: 546 RVRASSIRRLGELVDQYPDEAIDILRSWLYEEVA 579


>gi|323139667|ref|ZP_08074709.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242]
 gi|322395099|gb|EFX97658.1| flagellar M-ring protein FliF [Methylocystis sp. ATCC 49242]
          Length = 565

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 196/554 (35%), Positives = 311/554 (56%), Gaps = 6/554 (1%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D++     +  +LG  ++  L     + + +   + ++++ P ++ LY  L+  DV+RI
Sbjct: 13  MDRITLLLDNLKALGTRKLAALGLTFALVVAIVSISAYYLSRPTFEVLYAGLDREDVSRI 72

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I F I+  G+++SVP     +AR+ LA +GLP S +N+GYELFDKV + GLT
Sbjct: 73  GSVLKSTGIPFDINTEGNAVSVPYGQTAQARMLLAERGLPQS-ANAGYELFDKVGALGLT 131

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
           SFMQE+TRVRALEGE+ARTIQ I G+ AARVHIVMPD GSFR+    P+ASV+IR   P 
Sbjct: 132 SFMQEVTRVRALEGELARTIQLIRGVKAARVHIVMPDEGSFRRAKQPPSASVIIRTEGPD 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
              +A+AIRHLVA+++P +++  VTVL++ G +L++++ +       K+L++ + IQ +I
Sbjct: 192 DTSAAQAIRHLVASSLPGMNVDQVTVLNTDGMILSSSDGDATDAVPVKTLTLEKNIQKDI 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI + L  +L + NF+  V A +N D +QI E +YDPDSKVERS+R  K++ RS+ S 
Sbjct: 252 QDNIRRTLTPYLRLPNFQVTVRARVNTDRKQINETIYDPDSKVERSVRTVKESSRSQDSS 311

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
             +A TV  N+P          +S +   K EE +NYE+++K++ T    Y +E LS+AV
Sbjct: 312 SAAATTVTNNIPQNGVNNADGKQSNDENKKNEELTNYEMSSKTVTTVSGGYNIEHLSVAV 371

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           ++N+    E       Q  ID  L EI +++S+A G+   RGD + +T++DF+ N+   +
Sbjct: 372 LINRSAFAEPNKEPPKQEAIDRQLKEIEQLISSAAGLKKERGDALKVTAVDFMFNEHEMT 431

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                 F+ +L  H  +++N +  L    LV   GL   RR    + + +       I  
Sbjct: 432 PVESPGFVAMLGSHLGSILNMIAALGIAALVVIFGLAPARRALLAESSTERTEPPPLIGM 491

Query: 482 PPPISSAVTTGLMPNDNI---ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                 + T      D I   A  +    I      L   I+      +  +L  +I+ +
Sbjct: 492 GDQSFESPTFEAPTFDGIPGLAGATPGGAIAMSGPTLLEDISERRQDIARRKLEELIQND 551

Query: 539 EERFAKILRKWARS 552
           E + A IL++W RS
Sbjct: 552 EAQAAAILKQWMRS 565


>gi|163757999|ref|ZP_02165087.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43]
 gi|162284288|gb|EDQ34571.1| flagellar M-ring protein [Hoeflea phototrophica DFL-43]
          Length = 560

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 240/561 (42%), Positives = 349/561 (62%), Gaps = 7/561 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M++L+QL Q  K+  SLG+ R+L L  V    + L +AA  F+N P  + LY+ L   D+
Sbjct: 1   MSLLNQLSQIGKNLASLGQARMLTLGGVGAASVALIIAAALFLNKPARETLYIGLSGEDM 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +IS+ L+E+NIDF    +G+SI+VP+ M  +AR+ LA +GLP SS+ +GYELFDKV S 
Sbjct: 61  TQISLVLAESNIDFASGLDGNSITVPAGMTSRARMLLAERGLP-SSNTAGYELFDKVGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQSI+GI AARVH+VM D G+FR+   +P+ASVM+R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQSINGISAARVHLVMADRGNFRRGEQQPSASVMVRTG 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
                ++A +IRHLVA++VP L++ +VTVLD+TG+LL   +   N    +SLSIVQ +Q+
Sbjct: 180 TNLAPRTANSIRHLVASSVPGLNVDEVTVLDATGQLLATGDDFSNSNLNRSLSIVQLVQN 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E+E NI KALA FLG++NFR++V A +N D+QQ++E ++DP+S+VERS R++++ Q S  
Sbjct: 240 EVETNIEKALAPFLGIENFRASVTATVNTDSQQVQETIFDPESRVERSTRVTRENQTSNQ 299

Query: 300 SQPESAVTVEQNMPHV--SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           S  ++  TVEQN+P    +      P+S E  ++KEEQ+NYEIN+K I+T  ++Y +E L
Sbjct: 300 SATDTPATVEQNIPDQGPAAGGAAGPQSSELAERKEEQTNYEINSKVISTVRNSYTVEGL 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AVVVN+ R+ ++ G +  + +  ++LAE+  +V+ A G++  RGD   IT MDF+ ++
Sbjct: 360 SVAVVVNRARIADMYGGAPTEEQTAAFLAEVQTLVNLAAGVDDERGDRANITVMDFMASE 419

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L  +   Q  F D L  H  T+INA+ F+   +L+   G   L       +  +  V   
Sbjct: 420 LLTADAAQGGFGDTLKTHIGTIINAIAFITVAVLLIMFGFRPLLGAGKTAEQAEDAVDDI 479

Query: 478 SILSP---PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            +  P   P          M                         N  V +  + RL  M
Sbjct: 480 GLELPDFSPAAMGGPGAMPMEGFGADFGFGEDGDSELEMEESGSFNRRVKEGPERRLARM 539

Query: 535 IEINEERFAKILRKWARSEIE 555
           +EINEER AKILR+W+  E  
Sbjct: 540 VEINEERAAKILRQWSSGEAA 560


>gi|302037604|ref|YP_003797926.1| flagellar M-ring protein FliF [Candidatus Nitrospira defluvii]
 gi|300605668|emb|CBK42001.1| Flagellar M-ring protein FliF [Candidatus Nitrospira defluvii]
          Length = 518

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 124/555 (22%), Positives = 224/555 (40%), Gaps = 49/555 (8%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
            F         +  I+   +   I   +A   +   P    L+  L V D + I   L +
Sbjct: 1   MFSKFNQFTINQRFIILLALAGSIAGLVAVTLWTQQPDMQVLFANLAVDDASGIIDKLKD 60

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A + +  ++ G+++ VPS+ V   R+ LA QGLP      GYE+FD+    G++ F+Q++
Sbjct: 61  AKVPYETANGGTTVLVPSAQVHDLRLELAGQGLPHGGG-VGYEIFDRTT-MGMSDFVQKL 118

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187
              RAL+GE+ARTI  +  +  ARVH+ +P+   F     R  ASV+  +RA        
Sbjct: 119 NYRRALQGELARTITQMPEVERARVHLAIPERRLFATEQDRARASVVVSLRASQTLSKAQ 178

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNI 245
            + + HLV+++V  L   DVTV+D  G LL+  +++    + G  +   + ++ +IE  I
Sbjct: 179 IQGVVHLVSSSVEGLQSRDVTVVDGHGNLLSNTSSDESAGLSGTQMEYQRTLEKDIETRI 238

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              L   +GV+     V + L+    +  E  YDP+ +V RS +  ++            
Sbjct: 239 QTMLERIVGVNKAVVRVSSVLDFRKIETTEERYDPNGQVVRSEQRGQEKSSGVNGTSGGV 298

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             VE N+P  ++ +     S  N  K  E  NYEI+            +++LS+AV+V+ 
Sbjct: 299 PGVESNVPGGTEAEGGQTSSNNNQTK-NETVNYEISRTVSRIVEPTGTIKKLSVAVLVDG 357

Query: 366 GR-------LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
                                + +  +  I +IV  A G ++ R D + + S+ F     
Sbjct: 358 TYEGGGKAGEAGADQPKKYVPRSEEEMKRIEEIVKKAMGYSTERQDQVEVVSIQFG--LG 415

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
               T  V      S+ +   +   V  +   L+ F+ +  L  +        G     +
Sbjct: 416 AEEPTGGVEAAPDASKAWMPYVRYAVGGLLFFLIFFMVVRPLMVMLVQSAPAAGGGETPA 475

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           + +      A  +G  P                                  ++L M + N
Sbjct: 476 LPASVGQVEAAISGKQPG---------------------------------QILDMAKNN 502

Query: 539 EERFAKILRKWARSE 553
               A ++++W ++ 
Sbjct: 503 PANTAVVVKQWLKNN 517


>gi|146342729|ref|YP_001207777.1| flagellar MS-ring protein [Bradyrhizobium sp. ORS278]
 gi|146195535|emb|CAL79562.1| Flagellar basal body M-ring protein [Bradyrhizobium sp. ORS278]
          Length = 532

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 127/549 (23%), Positives = 228/549 (41%), Gaps = 24/549 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R+  + +V    +  F      V +P    L+  L + D + I   
Sbjct: 1   MQGLLDFLKGLGAARLAAMVAVTAALVGFFGFVIMRVTAPQMTTLFTDLSMDDSSSIIKD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F I + GS I VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQGIAFEIRNEGSVIMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  + AARVH+V+P+   F +    P+AS+++R        
Sbjct: 120 QNINHLRALEGELARTIRAIDRVQAARVHLVLPERPLFSRETPEPSASIVVRVRGSLEAN 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AIRHLVA+AV  L    V+++D  G+LL                  A +  +   + 
Sbjct: 180 QIRAIRHLVASAVNGLKPQRVSIVDEAGQLLADGTQTDIDQQVGDERRNAFEKRMRKQVE 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             +++ +G    R  + A+ + +        YDP+ +V RS +  ++   +  S  +  V
Sbjct: 240 DIVSSVVGSGRARVQLSADFDFNRITQTSDRYDPEGRVLRSSQTREEQSATSESNGQVTV 299

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
               N    + +     +  + + K EE +NYEI+  +     +  ++ R+S+AV+V+  
Sbjct: 300 ---NNELPGNQQNQQGQQPKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGA 356

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G    + +    L  I  +V +A G + +RGD + + ++ F +  +    +   
Sbjct: 357 YSKNEKGDLVYKERSKEELDRIAALVRSAIGFDQKRGDQVEVVNLKFADGPVVPQISEPT 416

Query: 427 SFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            F+ +L         VI   V ++  ++V F+ +  L +     +         +I    
Sbjct: 417 GFLGMLHFTKDDVMYVIELAVMMLLGIVVVFMVVRPLVKKIISTEEIAAANAVPAITD-- 474

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                              +      +      +++   V  QS  R+  + + N    A
Sbjct: 475 ---------------ETAQAQAHAQQTAQLIDVAQVQGQVHAQSVHRVGELADRNPGEAA 519

Query: 544 KILRKWARS 552
            I+R+W   
Sbjct: 520 AIIRQWLAE 528


>gi|237653561|ref|YP_002889875.1| flagellar MS-ring protein [Thauera sp. MZ1T]
 gi|237624808|gb|ACR01498.1| flagellar M-ring protein FliF [Thauera sp. MZ1T]
          Length = 571

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 131/567 (23%), Positives = 228/567 (40%), Gaps = 33/567 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++ Q  ++  +L   + +  A  I + I L   +  +  +P Y  L+  L+  D  +I  
Sbjct: 24  RMQQALQNLAALSTRQKIAGAVAIALAIALVAGSLLWNRAPEYAVLFSNLDERDGGQIIA 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L + NI +R+S  G +I VP + V + R+ LAA GLP   S +G+EL D     G++ F
Sbjct: 84  ELQQRNIPYRMSPTGHAILVPQAQVHETRLRLAADGLPK-GSLAGFELMD-GQKLGISQF 141

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--S 183
            +++   RALEGE+ RT+Q+I  + +ARVH+ MP   +F +   RPTASVM+        
Sbjct: 142 NEQVNYQRALEGELTRTVQAIDAVASARVHLAMPKQTAFLRDDQRPTASVMVNLRGGRIL 201

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHE 240
                  I HLV+++VP +    V ++D  GKLLT          +    L  V+ ++  
Sbjct: 202 SPDQVAGIVHLVSSSVPRMHAEGVKIVDQNGKLLTEQADPLLRAGLDATQLEYVRLLEQG 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ-RSET 299
               I+K LA  +G  N+ + V A+++ +  +     Y P+   +++IR  + ++  +  
Sbjct: 262 FIERIDKILAPLVGKGNYGAQVAADVDFNQVEQTAETYKPNPTPDQAIRSQQTSEAFNPQ 321

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRS--------LENTDKKEEQSNYEINTKSIATTHDN 351
              +       N P V                     +  +    NYE++          
Sbjct: 322 PGAQGVPGALTNQPPVPATAPITNPQVAGGGGAQGLASGNRSAVLNYELDRNIQHVKQAV 381

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            +++RLS+AVVVN   L    G   +    D  +A I  +V  A G N+ RGDTI + S 
Sbjct: 382 GQIKRLSVAVVVNNRTLPGPDGTPTNVPLPDEEIARITNLVREAVGYNADRGDTINVASG 441

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F ++   +           +       +N L+ L+  L   F  +  L R       K+
Sbjct: 442 AFADDG--SGAAPPPWKDPEIVALGKEGLNWLLVLIAILFAYFGVIRPLLRTVVPPKPKE 499

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            + G  +               +       +    + F                      
Sbjct: 500 EKKGAAAGEEGGEGEEGEEGVRVTLSGETGEGEETETFEQRLERARAAAR---------- 549

Query: 532 LHMIEINEERFAKILRKWARSEIEDRY 558
                 + +  A +++ W     E R 
Sbjct: 550 -----NDPKMVANLIKDWMGMNEEARK 571


>gi|251789188|ref|YP_003003909.1| flagellar MS-ring protein [Dickeya zeae Ech1591]
 gi|247537809|gb|ACT06430.1| flagellar M-ring protein FliF [Dickeya zeae Ech1591]
          Length = 568

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 127/582 (21%), Positives = 226/582 (38%), Gaps = 61/582 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  L   D   I   L
Sbjct: 13  KNFGEILDRLRANPRIPLLIAAAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            + NI +R +++G++I +P+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 73  GKMNIPYRFTESGAAIMIPADKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
           +I   RALEGE+ART++++  I  ARVH+ +P    F +    P+A+V +          
Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               AI +LV+++V  L    VTV+D TGKLLT N+     +    L     I+   +  
Sbjct: 191 NQINAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDGSGRDLNAAQLKYANEIEGNYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-- 302
           I   LA  +G  N  + V A+++   ++  +  Y P+    +S   S+ + +S+      
Sbjct: 251 IEAILAPVVGAGNVHAQVTAQIDFANREQTDEQYQPNQSPNQSAVRSQQSSQSDQRGGSN 310

Query: 303 -ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENTDKK 332
                    N P  +                                     +     + 
Sbjct: 311 VGGVPGALSNTPSPAPTAPISTPPANNANNTNNTNNTNTAGTNTQTSGNNAANQTYNSRH 370

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           ++  NYE++     T      ++RLS+AVVVN        G+ A     D  L +I  +V
Sbjct: 371 DQTINYEVDRTIRHTKQSTGNIQRLSVAVVVNY--TQGEDGKPA--ALSDEQLKKIEALV 426

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             + G ++ RGD++ + +  F                      F  +  A  +L+  ++ 
Sbjct: 427 RESMGFSTERGDSLNVVNTPFTITDTSGGELP----FWQKQVFFDLLTAAGRWLLVLIVG 482

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             L    +R         +      + L       +VT   M  +               
Sbjct: 483 WILYRKLVRPQLQRRVQIQEAAAAAAALRGQDPDVSVTISSMEEE-------------LQ 529

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +  + R ++ +  Q   R+  + E +    A ++R W  +E+
Sbjct: 530 KKSEQRAHTEMHSQ---RIRELAENDPRVVALVIRHWMSNEL 568


>gi|332095496|gb|EGJ00512.1| flagellar M-ring protein FliF [Shigella dysenteriae 155-74]
          Length = 473

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 200/467 (42%), Gaps = 32/467 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +           +  + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           + +RGD++ + +  F  +                      ++ A  +
Sbjct: 415 SEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGCW 457


>gi|94314180|ref|YP_587389.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34]
 gi|93358032|gb|ABF12120.1| flagellar MS-ring protein [Cupriavidus metallidurans CH34]
          Length = 563

 Score =  360 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 110/589 (18%), Positives = 218/589 (37%), Gaps = 62/589 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M     L         +     L +       +        +  +P Y  LY  L   D 
Sbjct: 1   MNATATLPNGTALLEKVKANPRLPMMLGGAALVAAIAVGVMWSRAPDYKVLYSNLSERDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +  +L + N+ ++ ++ G ++ VP+  V + R+ LA+QGLP S   +G EL D    F
Sbjct: 61  GAVIQSLQQMNVPYKFAEGGGAVMVPADKVAETRLRLASQGLPKSG-TTGMELMDN-QKF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G++ F +++   R LEGE+AR+I+SI  + +ARVH+ +P    F +   +PTASV+++  
Sbjct: 119 GISQFAEQVNYQRGLEGELARSIESIGAVQSARVHLAIPKPTLFVRERQKPTASVVLQLY 178

Query: 181 NPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                      AI HLV+++VP L    ++++D  G LL+       +    L  VQ ++
Sbjct: 179 PGRAVDEGQVAAITHLVSSSVPELTPKSISIVDQQGNLLSGTNDRS-LDASQLKYVQQVE 237

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                 +   LA  LG DN  + V A+++  + +  +  Y P+    ++   S+    S 
Sbjct: 238 QGYVKRVESILAPILGKDNIHAQVTADVDFSSVEHTDESYKPNQDPTKAAIRSQQTSESN 297

Query: 299 TSQPESAVT--------------------------------VEQNMPHVSDRKVPLPR-S 325
           +                                         + N P  + +       +
Sbjct: 298 SQGGTPVGGVPGALSNQPPAAAAAPVTTPQPPRQPGQPNPPAQANQPAQTTQTTQTAEKT 357

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
             +  +++  +NYE++            ++RLS+AVVVN     +  G+   +      L
Sbjct: 358 GPSNSRRDSTTNYELDRVVRHVQQAAGGVKRLSVAVVVNYRTKVDAKGKPVTEALSAKEL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A+I  +   A G ++ RGD++ + +  F    +     V V     +     T +  L+ 
Sbjct: 418 AQIENLTKEAMGFSADRGDSLNVVNSPFTS-DIKTEPEVPVWKQPQMIDLAKTGVGYLLL 476

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
            +  + + F     + R +             +  +        T   +           
Sbjct: 477 ALLAVFLWFKVARPVLRKYTAPPLPAPTETAAATEAVLLPPEEETNPEVLRL-------- 528

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                          +   +     +    + +    A +++ W  ++ 
Sbjct: 529 ---------------AAKYESDLALVRDAAQRDPRLVASVIKTWMANDE 562


>gi|194292866|ref|YP_002008773.1| flagellar ms-ring protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226770|emb|CAQ72721.1| FliF: Flagellar biosynthesis protein, M-ring protein, Belongs to
           the fliF family [Cupriavidus taiwanensis LMG 19424]
          Length = 576

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 112/560 (20%), Positives = 215/560 (38%), Gaps = 72/560 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ LA+Q
Sbjct: 42  LWSRGPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRLASQ 101

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP S   +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ +P 
Sbjct: 102 GLPKSG-TAGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLAIPK 159

Query: 161 MGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +   +PTAS++++             AI HLV+++VP L    ++++D  G LL+
Sbjct: 160 PTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGNLLS 219

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
               ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +  Y
Sbjct: 220 NTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTDESY 279

Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSD------------------ 317
            P+    R+   S+    S       P        N P  +                   
Sbjct: 280 KPNQDPTRTAIRSQQTSESTQQGATPPGGVPGALSNQPPAAAVAPVTTPQTPRAGQAPGQ 339

Query: 318 -----------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                                         S  ++++++   NYE++            +
Sbjct: 340 AGAPGAGQPGQPGQAGQAGQAAQGATATASSGPSSNRRDSTVNYELDRSVRHVQQAPGGV 399

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS+AVVVN  +  +  G+   +    + LA+I  +   A G ++ RGD+I + +  F 
Sbjct: 400 RRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSAERGDSINVVNSPFT 459

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             +      + +     +     ++   L+  +  L   F     + R +        E 
Sbjct: 460 AEREKAEPELPLWKQPDMIALGKSLAGYLLLALLALFAWFKVARPILRRYTAPPLPAPEP 519

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             ++     P        ++                          +   +     +   
Sbjct: 520 KDETEAVLLPPEEPANPEILRL------------------------AAKYESDLALVRDA 555

Query: 535 IEINEERFAKILRKWARSEI 554
            + +    A +++ W  ++ 
Sbjct: 556 AQRDPRLVASVIKNWISNDN 575


>gi|188579876|ref|YP_001923321.1| flagellar MS-ring protein [Methylobacterium populi BJ001]
 gi|179343374|gb|ACB78786.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001]
          Length = 570

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 186/570 (32%), Positives = 303/570 (53%), Gaps = 18/570 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGIGAYYLSRPAQETLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G +L A +       GK  ++ +++  
Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + L+ +LGV NF  +V  +LN D     E +Y+PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLSPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G        D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAGPDDKAAL-DKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +A + EV   +
Sbjct: 419 LEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPEAAQSEVAALA 478

Query: 479 ILSPPPISSA--------------VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                P  +A                 G      +    + +        L   +   ++
Sbjct: 479 GPEGAPALAAGMASGLAADGNMALAAPGTALPGAVGAGEAAKLPAPGVAGLLEELEDKMA 538

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +    RL  +I+I+EE+ A +L++W   E 
Sbjct: 539 RSPQKRLEQLIDIDEEQVAAVLKRWLMREE 568


>gi|171057703|ref|YP_001790052.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6]
 gi|170775148|gb|ACB33287.1| flagellar M-ring protein FliF [Leptothrix cholodnii SP-6]
          Length = 576

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 125/566 (22%), Positives = 212/566 (37%), Gaps = 40/566 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F      L   R L LA  +L  I L   A F+    +   L+  L   D   I   L++
Sbjct: 23  FAARLAGLPLGRKLALAGGVLALIGLLAMAVFWNTGNNDKVLFANLSDKDGGAIVAQLTQ 82

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ ++ G++I VP+  V   R+ LA  GLP   S  G+EL D    FG T F + +
Sbjct: 83  MNVPYKFTEGGTAILVPAEKVHDVRLKLAQAGLPK-GSTVGFELMDNA-RFGTTQFQERL 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
              R LEGE+ R+I ++S + AARVH+ +P+   F +   +P+ASV++            
Sbjct: 141 NFQRGLEGELVRSITALSAVEAARVHLALPNQNGFFRDQQKPSASVLLTLHPGRTLDRAQ 200

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--------KSLSIVQAIQH 239
              I HLV+A+V  L+   V+VLD +G LL                   + L  V  I+ 
Sbjct: 201 LAGIVHLVSASVAELNPKAVSVLDQSGSLLAGPPEGMAGAAGGTNGLDAQQLQYVNQIET 260

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS---KDAQR 296
                I   L   LG DN R+ V AE++    +     + P+     +   S    +   
Sbjct: 261 VYTKRILDILEPVLGRDNLRAQVSAEIDFSQTESTSEEFKPNQGDAPAAVRSAQSTEQSN 320

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPR-----------SLENTDKKEEQSNYEINTKSI 345
              + P      + N P          +               T ++E  +NYE++    
Sbjct: 321 PGAAMPAGVPGAQSNQPPTPATAPINGQAQQMQAAQGGVGSNGTARREAVTNYEVDKTVR 380

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T   + +++RLS AVVVN   +T+  G           L ++  +V    G +  RGD+
Sbjct: 381 VTRAASGQVKRLSAAVVVNSRSVTDKKGNVQVVPLTPEELDKLTALVQETVGFSKDRGDS 440

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + +  F +       T  +     +     T+   L   +  L++ F  +    +   
Sbjct: 441 VKVINAPF-KVDKPVEDTTPLWKQPEVQDMVRTLALPLGLALLALIIVFGAIRPALKAAQ 499

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
             +  +            P            +   L + + +      +   R       
Sbjct: 500 PPEPVQLVDAVVDDAQELPALEG-----SAEEAAHLAAGHMNALPAPEDDAQR------- 547

Query: 526 QSDLRLLHMIEINEERFAKILRKWAR 551
               +   M + N    A I+R W  
Sbjct: 548 -RLEQARKMAKDNPAAVANIVRGWVS 572


>gi|206890854|ref|YP_002248115.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742792|gb|ACI21849.1| flagellar M-ring protein FliF [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 505

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 124/555 (22%), Positives = 229/555 (41%), Gaps = 53/555 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI D++    ++  ++   R L LA + L+   + +    ++    Y  LY  L   D 
Sbjct: 1   MAITDRVKTVLENIKNMPLNRKLALAGLTLIVFAIILTLFLWLPKQDYQVLYSNLSAEDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L E  + +++ DN  +I VPS  V + R+ LA+QG+P S    G+E+FDK    
Sbjct: 61  GNVINKLKEKKVPYQVKDN--AIYVPSQKVHELRLELASQGIP-SGGGVGFEIFDKTQ-I 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT F Q +  +RAL+GE+ RTI+ +  +   RVHI +P+   F +    PTASV+++  
Sbjct: 117 GLTEFSQRVNYIRALQGELQRTIKQLQEVDQVRVHIAIPEKSIFTEKEDHPTASVVLKLK 176

Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAI 237
                  +   +I HLV+++V  L    VTV+D  G LL+A +    +     +   + I
Sbjct: 177 PGRALSKEQVSSIVHLVSSSVEGLSPQYVTVVDQYGNLLSAPKDSTQLAEATHIEYKRNI 236

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +   E NI   L   +G       V A+++    +  E  YDPD+   R+ + +++  ++
Sbjct: 237 EKTYEKNIQSMLENIVGKGKAIVRVSADIDFSKVEKVEEKYDPDTIAIRNEQRTQE--KT 294

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            + Q      V  N P     +    +    + K++E  NYE++           +++++
Sbjct: 295 MSPQQGGIPGVLSNQPGQP--QTGATQQNIQSQKQQESINYEVSKSISKILQSTGQIKKI 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AV+++     E  G+     + D  + +  ++V A+ G N  RGD + + S+ F    
Sbjct: 353 SVAVLIDGIY-KEEKGKKVYVPRSDEEIKKYQELVQASIGYNKERGDYVIVESIPFEIVP 411

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
               G               T++  L+ LV   L+    +  +  L      +       
Sbjct: 412 EEKPGIDYWGI-------ATTILKYLIPLVIIALIILFVVKPIIELLKKPVEE------- 457

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                                               + ++       +     + H+   
Sbjct: 458 ---------------------------KIKKKEIVISEEAVPPVMKERDIREEIRHIART 490

Query: 538 NEERFAKILRKWARS 552
           N ++   ILR+W   
Sbjct: 491 NPKKVIAILREWITE 505


>gi|224373126|ref|YP_002607498.1| flagellar MS-ring protein [Nautilia profundicola AmH]
 gi|223589285|gb|ACM93021.1| flagellar M-ring protein FliF [Nautilia profundicola AmH]
          Length = 561

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 133/565 (23%), Positives = 234/565 (41%), Gaps = 20/565 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN-----SPHYDNLYVKL 55
           M   +   Q      +L + + +++ S I+  + +      F          Y  L+  L
Sbjct: 1   MNFEELFKQIIAFTKNLNKRQKIVIISAIVALVAIISFLVVFNTTSSKTKTGYAILFDNL 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
              D   I   L +  I + I ++G  I VP  +V K R+ +AAQGLP SS   G+ELFD
Sbjct: 61  SSKDAALIVQYLDKKQIPYVIPEDG-VIEVPKDVVQKIRLDVAAQGLPKSS-KVGFELFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K + FG+T F Q++  +RALEGE+ RTI+S+  + +A V+I +P    F +    PTASV
Sbjct: 119 KNS-FGITDFEQKVKYLRALEGELGRTIESLDAVESATVNIAIPKDSVFVEKQTPPTASV 177

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
           +I+         K  + I++LVAAAVP +   +V ++D  G LL  N+       +L   
Sbjct: 178 VIKLKPNMVLTPKQIQGIKYLVAAAVPKMKPENVKIIDQYGNLLGENDELTQNNELLKAE 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           +   + ++  +E  I   LA  +G  +   + V  +++    + +  +Y PD+ V     
Sbjct: 238 IIYKKRMEKALEDKIVSILAPVIGGKNKVVAKVNLDIDFSQVKSKSTIYSPDNVVRSEQT 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           L +     +  +         N+  V   K       +   K +  +NYEI+T       
Sbjct: 298 LEESRTGYKPKEVGGVPGAVSNVGPVQGTK--SNEVKDKYTKSQTTTNYEISTTVKDVKE 355

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K++R++ AVVV+     +  G+          L  I  +V    G + +RGD+++++
Sbjct: 356 PLAKIKRITAAVVVDGHYKEDKDGKKEFVPLTKLELTNIENLVKNTIGYDPKRGDSVSVS 415

Query: 410 SMDFLENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           S  F  N   N  T  V   M  +  +   +   L +L   +++       +        
Sbjct: 416 SFQFTGNSANNEPTSAVGKVMQSVQMYLGPISGILKYLFLAIVLFVFYKKVITPFTQKML 475

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             K E   + +     I+               +   Q +   S   +  +     +   
Sbjct: 476 EVKIEEEPEYVKPDIEINEEEVESTYDKIKELKEKVEQQLGISSDVNEEEL---KYEVLL 532

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
            R++ M E   E  AK+L    + E
Sbjct: 533 DRIVKMAEEKTEEVAKVLENLIKEE 557


>gi|238796932|ref|ZP_04640436.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
 gi|238719192|gb|EEQ11004.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
          Length = 563

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 116/582 (19%), Positives = 223/582 (38%), Gaps = 59/582 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +  +    +   +  +  ++L   +   + L +A   +  +P Y  LY  +   D   I 
Sbjct: 11  NNTVNLMAALERIRASPKIVLLICVSAAVTLLIALLLWAKAPDYRVLYSNISDQDGGAIV 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ N+ +R  D G +I VP   V +AR+ LA  GLP   S  G+EL D+   FG++ 
Sbjct: 71  AQLAQMNVPYRFEDRGGAIMVPVDKVYEARLKLAQLGLPKGGS-VGFELLDQE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   RALEGE++RTI+++  +  ARVH+ +P    F +     +ASV +   N   
Sbjct: 129 FSEQVNFQRALEGELSRTIETLGPVNGARVHLAIPKPSMFVREQKPSSASVTVNLSNGRS 188

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
            +     AI +L+A+AVP L+  +VT++D  G LLT    +       L     ++ + +
Sbjct: 189 LESGQVSAISYLIASAVPGLNADNVTIVDQGGHLLTQRGGQEVQTS-QLKFTSEVEADFQ 247

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSET 299
             I   LA  +G +N ++ V A+L+  T +     + P++  ++    S+   D+++   
Sbjct: 248 QRIQSILAPIVGRNNVKAQVTAQLDFTTHEQTAEQFQPNTASDKMSIRSRQSSDSEQGSK 307

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN-------------------------TDKKEE 334
           +          N P                                         ++++ 
Sbjct: 308 NGVGGVPGALSNQPPTPATAPITQPVGAKEATPTTPTTPGAKGAATTVATPVPFNNRRDN 367

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
            +NYE++            +ERLS+AVVVN                  + + +IN +V  
Sbjct: 368 TTNYELDRTLTHIKRSAGSIERLSVAVVVNYL----PAKEGVPAALSKAQMDQINSLVKE 423

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A G +  RGDT+ I +  F + +   +           +     ++ A  +L+  ++  F
Sbjct: 424 AVGFSVERGDTVNIVNSLFSDVEEEVAPP-----FWKQAGFINLLMAAGRYLLVAIVAWF 478

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
               A++     +             +      A             +   +   +    
Sbjct: 479 FWRKAIQPAWMRNQELILARLELEKEARQAELDANKRKAESGAKNKAEQRVEVELNTQS- 537

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                           L  + E      A +LR+W   +++ 
Sbjct: 538 ----------------LRELAEQEPRVIALVLRQWMNKDLDS 563


>gi|320354317|ref|YP_004195656.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032]
 gi|320122819|gb|ADW18365.1| flagellar M-ring protein FliF [Desulfobulbus propionicus DSM 2032]
          Length = 550

 Score =  359 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 134/551 (24%), Positives = 240/551 (43%), Gaps = 25/551 (4%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
               ++  +    R + LA+V  + + LF        +  Y  LY  L  SD + +   L
Sbjct: 17  KTLVETVKAWPMPRKIALAAVTAITLGLFAFIIVQARTADYQLLYGNLAESDASSVVEWL 76

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
              NI +++++NG +I +P+  V + R+ LA+ GLP      G+E+FDK  SF LT F+Q
Sbjct: 77  KGQNIPYKLANNGHNILIPAKDVYETRLSLASLGLPQGGG-VGFEIFDK-QSFALTDFVQ 134

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185
           ++   RAL+GE+ARTI S+  +  ARVH+ +P+   F+      TASV+I+         
Sbjct: 135 KVNYSRALQGELARTIASLGPVETARVHLALPEKRLFKDQQKPATASVIIKLAPGKRLSE 194

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIE 242
              E + HLV++++  LD G VTV+D  G +L+         N+    L     ++  +E
Sbjct: 195 AQIEGVVHLVSSSIEGLDPGQVTVIDQNGNVLSRIGEKGLSGNLSPDMLEFQMQVEQRLE 254

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
                 L   LG  N    V A L+    +  E  +DP+  V RS +LS++  +S +   
Sbjct: 255 DRAQALLDKSLGAKNAMVRVSATLDFAQTEKTEETFDPEEPVIRSEQLSEE--KSGSEIT 312

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                V+ N+   +        +   + + +  +NYEI+     TT     + +LS++V+
Sbjct: 313 GGVPGVQSNLEGNTA---QTAGATPPSSRSQRTTNYEISKVVSKTTQPVGTISKLSVSVL 369

Query: 363 VNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V    +       A  + + ++ L  +  +V++A GI++ RGD I +TSM FLE+     
Sbjct: 370 VADKVVPGKDKEPAKTEPRSETELKTLQTMVASALGIDTARGDKIEVTSMPFLESAEDGG 429

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              Q      L   +   I   + ++G +L+    +  L +  + D  +  +   +    
Sbjct: 430 ---QEGMAANLLYQYLPFIRYGLLILGAVLIYLFMIRPLMKTLHRDVTEHYKTVEEMEAE 486

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               ++A   G  P    AL        +        +          ++   +E +   
Sbjct: 487 QVQAAAAREPGAGPAGAGALVGGAAYREAMESAPLDPLE---------KIRKGVEQDPVF 537

Query: 542 FAKILRKWARS 552
            A +L+ W   
Sbjct: 538 SAHVLKGWIHE 548


>gi|197120199|ref|YP_002140626.1| flagellar M-ring mounting plate protein FliF [Geobacter
           bemidjiensis Bem]
 gi|197089559|gb|ACH40830.1| flagellar M-ring mounting plate protein FliF [Geobacter
           bemidjiensis Bem]
          Length = 523

 Score =  359 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 128/556 (23%), Positives = 234/556 (42%), Gaps = 47/556 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  +   +L   + L++  V L  ++ F A     N   Y  L+  L   D   I 
Sbjct: 3   EGLKKLLEPFLALSTAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  + ++IS +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+T 
Sbjct: 63  KKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-VGFEIFDRKN-FGMTE 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F+Q++   RAL+GE+ RTI  I+G+ +ARVH+ +P+   F+      TASV+++  +   
Sbjct: 121 FVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFKDQEKPATASVVLKMKSNRQ 180

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239
            +    + I HLVA+++  +D   VTVLD+ GK+L+++   +    + G      +A + 
Sbjct: 181 LREGEVQGIVHLVASSIEGMDPEQVTVLDTRGKVLSSHSPNDPTSKVAGARQDTQRAFEK 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++     +
Sbjct: 241 TEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEEK-GGGS 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S       V+ NM                  K +E  NYE++  +         L ++S+
Sbjct: 300 STASGVPGVQSNMGRAQGAAGSTTGGGS---KTDETLNYEVSRSTARIIEPVGSLSKVSV 356

Query: 360 AVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           A++V+         +       Q +    + +I  +V +A G N+ RGD +T+ ++ F E
Sbjct: 357 AILVDGKYELSPGAKPGATPKYQPRSPDEMQKIESLVKSAVGFNAERGDQVTVANIPFQE 416

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                          I+     T+I   +  +  L + F  +  L ++  I+ A    + 
Sbjct: 417 TGDQGGEQPSWYDAPIVQ----TLIKNGLIGLAFLALLFYVIRPLMKMLKIEKAAHHFLP 472

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                                          D+         ++     + + L L+  +
Sbjct: 473 ----------------------------IQDDVEQQQMLEMQKVEHEKMRVTQLELVEKV 504

Query: 536 EINEERFAKILRKWAR 551
           + +  + A+IL+ W  
Sbjct: 505 KQDPYQAAQILQNWLT 520


>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1]
 gi|300074160|gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score =  359 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 122/545 (22%), Positives = 221/545 (40%), Gaps = 42/545 (7%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +     Y  L+      D   I  +L + N+ ++ SD G++I VP +MV  AR+ L
Sbjct: 38  GIWLWSQKVEYRVLFSNFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKL 97

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           AAQGLP    N G+EL  +    G++ F++++   RALEGE+AR++ S++ +  ARVH+ 
Sbjct: 98  AAQGLPK-GGNVGFELM-ENQKLGISQFLEQVNFQRALEGELARSVGSLASVQTARVHLA 155

Query: 158 MPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +   +PTASV++          +   AI HLVA++VP L    VT++D  G 
Sbjct: 156 LPKASVFVRDQQKPTASVVLSLYPGRYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGN 215

Query: 216 LLTA---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           LL+          +    L  VQ +Q +I   +   +A  +G  N R+   A+++    +
Sbjct: 216 LLSDTTKQAQPNTLDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSE 275

Query: 273 IREIVYDPDSKVERSIRLSKDAQ--RSETSQPESAVTVEQNMPHVSDRKVP--------- 321
                Y P+   + +   SK +    S ++          N P                 
Sbjct: 276 QASEAYKPNQTKDSAAVRSKQSSEANSASNGTSGVPGALSNQPPAPATAPIVNPAVANGA 335

Query: 322 -------------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                           +     +K+E  NYE++     T      + RL++AVVVN  R 
Sbjct: 336 ANQTGAATPNGALPTPTATGNSRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRT 395

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
            +  G+   +   ++   +I  +V  A G N  RGD++ + +  F          V +  
Sbjct: 396 MDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQF---STDMEPEVPLWK 452

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
              +      +   ++     L + F  L  +    +  + ++     K+       ++A
Sbjct: 453 QPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAAAAA 512

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
           V  G  P+D  A+ + + +     R           K +        + + +  A I++ 
Sbjct: 513 VAAGFDPDDPDAIVNLSGESEVDER--------AQYKANLETAKQWAKNDPKLVASIIKS 564

Query: 549 WARSE 553
           W  +E
Sbjct: 565 WVNNE 569


>gi|307822872|ref|ZP_07653103.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96]
 gi|307736476|gb|EFO07322.1| flagellar M-ring protein FliF [Methylobacter tundripaludum SV96]
          Length = 611

 Score =  359 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 134/573 (23%), Positives = 241/573 (42%), Gaps = 36/573 (6%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            K    L   R + L   + + + + +A   +   P Y  LY ++  SDV+ I   L++ 
Sbjct: 44  IKGLAGLTIARQIGLMLGLALSVAIGVAIVLWSQEPSYGRLYSEIGESDVSEILEILNKE 103

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +++     +I VP   V   ++ LAAQGLP S+S  GYEL DK   FG +  ++ + 
Sbjct: 104 NIKYKVETGSGAIMVPMDQVSAVKLKLAAQGLPKSNS-LGYELLDKEQGFGASKGVETVR 162

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGEIARTI SI  +  ARV + +P    F +   +P+ASV++             
Sbjct: 163 FQRALEGEIARTIMSIQNVKTARVLLAIPAQSVFVRERKKPSASVIVNLYQGRSLDKGQV 222

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNIN 246
           E+I HLVA++VP L+   VTV+D  G+LL +N+     N+  K     + I+  +   I 
Sbjct: 223 ESIIHLVASSVPQLEAEQVTVVDQKGQLLNSNDSSVAGNLTSKQFEYKKNIEEHLMGRIE 282

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L+  +G D  R  + A+++       + +++PD    RS + S++  +S  S  +   
Sbjct: 283 NILSPLVGSDGMRVQISADVDFTETDRTQEMFNPDLPALRSEQTSEE--QSTQSAIQGVP 340

Query: 307 TVEQNMPH-------------------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
               N P                     +    P   +   +  K    NYE++     T
Sbjct: 341 GALSNQPTPAGAAPDPAAAPAAPGSSATTAAAAPTSTATPGSAAKNATRNYELDKTITHT 400

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 L RLS+AVVV+   + +  G    Q      +   + +V  A G +S RGD +T
Sbjct: 401 RLATGALRRLSVAVVVDDRHVPQSDGTVKGQSYSQEDINRFSDLVKQAVGFDSSRGDQVT 460

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNI 466
           +T++ F  ++L  +      +       F  ++  +  ++  L + F  L   +R L   
Sbjct: 461 VTNVTFKIDELIEALPAIPVWE---QGWFLDLMKQVAAVLAVLFLLFGVLRPTMRSLVGR 517

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN------ 520
           D  +K  +                        +A+ +  Q++     N     +      
Sbjct: 518 DIEEKKALALAEAQEKAIAIGGSVRFNDQGAPVAVPAGQQNVSFAKPNEMEMQDLLLLDV 577

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
               +     +  +++ + +  A++++ W + +
Sbjct: 578 PQSYEHRLEYVKRLVDDDSKVVAQVIKSWIKKD 610


>gi|188534120|ref|YP_001907917.1| flagellar MS-ring protein [Erwinia tasmaniensis Et1/99]
 gi|188029162|emb|CAO97034.1| Flagellar basal-body M-ring protein [Erwinia tasmaniensis Et1/99]
          Length = 571

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 120/548 (21%), Positives = 226/548 (41%), Gaps = 56/548 (10%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  LY  L   D   I   L++ N+ ++  D G ++ VP++ V + R+ LA+Q
Sbjct: 46  LWAKQPDYRVLYNNLSNEDGGAIVTQLTQMNVPYKFDDRGGALLVPAAQVHELRLRLASQ 105

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL DK   FG++ F ++I   RALEGE+ARTI ++  +  ARVH+ MP 
Sbjct: 106 GLPKGGA-VGFELLDKE-KFGISQFSEQINYQRALEGELARTIATLGPVKDARVHLAMPK 163

Query: 161 MGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV   ++           A+ H+V+++V  +  G+VTV+D +G+LLT
Sbjct: 164 PTLFVREQKSPSASVTLALQPGRALDEGQINAVVHMVSSSVAGMPQGNVTVVDQSGRLLT 223

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            N+   R++    L     ++   +  I   L   +G  N  + V A+++ + ++  +  
Sbjct: 224 QNDTTGRDLNDAQLKYASDVETRYQQRIEAILGPIVGNSNVHAQVTAQIDFNKREKTDEQ 283

Query: 278 YDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMP--------------------- 313
           Y P+S  E+    S+    S                N P                     
Sbjct: 284 YAPNSNPEQQAVRSRQTSNSEQLGGQSAGGVPGALSNQPAPANAGPVTTPNNTNANGANG 343

Query: 314 -------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                    ++      ++  +  + +  +NYE+N   + T  +  +++RLS+AVVVN  
Sbjct: 344 ANANNGQPANNAASGAQKTSPSNTRSDNTTNYEVNRTILHTKMNVGEVQRLSVAVVVNYR 403

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                          ++ + +I  +   A G + +RGD++ + +  F +N          
Sbjct: 404 S----DAAGKPIALNEAQIKQIEDLTREAMGYSEKRGDSLNVVNSPFTQNSDLGDELP-- 457

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                       +  A  +L+  ++   L    LR       A +      +  +    +
Sbjct: 458 --FWKQPAFIDQMFEAGRWLLVLIVAFILYRKLLRPQLLRKAALEKSTREAATSAARNST 515

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                 +           ++D     R  + R+++ V  Q   R+  M E +    A ++
Sbjct: 516 QQEGVSV---------KLSKDELDQERKSEHRMSAEVMSQ---RIREMSENDPRVVALVI 563

Query: 547 RKWARSEI 554
           R+W + E+
Sbjct: 564 RQWMKDEL 571


>gi|189426353|ref|YP_001953530.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ]
 gi|189422612|gb|ACD97010.1| flagellar M-ring protein FliF [Geobacter lovleyi SZ]
          Length = 530

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 125/561 (22%), Positives = 230/561 (40%), Gaps = 48/561 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  +   +L   + L++  V+L  ++ F       N   Y  L+  L   D   I 
Sbjct: 3   EGLKRIVEPFMALAPGKRLLVGGVVLACLLSFALLIMLANRTDYRPLFTNLASEDAGEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L EA   ++I+ +G  I VP+  V + R+ LA++GLP      G+E+FD+ N FG+T 
Sbjct: 63  KKLKEAKTPYQITPDGKGIMVPADKVYELRLSLASEGLPQGGG-VGFEIFDRKN-FGMTE 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182
           F+Q++   RAL+GE+ARTI  ISG+  ARVH+V+P+   F++    PTASV+++      
Sbjct: 121 FVQKLNYQRALQGELARTITQISGVEQARVHLVIPEKTLFKEAEKPPTASVVLKMKGNKN 180

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----NEMERNILGKSLSIVQAI 237
                 + + HLV++++  ++  +VTVLDS GK+L+       +             +  
Sbjct: 181 LRDNEVQGVVHLVSSSIEGMNADNVTVLDSRGKILSKGGNGMADASAKATSAMQETQRGY 240

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +E  +   L   +G     + V A  +    +  E  +DP++   RS + S++    
Sbjct: 241 ERNVEERLQTLLDRVVGGGKSVARVSATFDFKQVERVEEKFDPETIAVRSEQRSEEKAGG 300

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                     V+ N+   +              K +E  NYE++  +  T      L ++
Sbjct: 301 SAVST-GVPGVQTNLGRTAPGAGGAAGGG---SKNDETLNYEVSRSTSRTVEPVGTLSKV 356

Query: 358 SIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           S+A++V+    T         G++    +    L +I  +V  A G N  RGD I+I ++
Sbjct: 357 SVAILVDGKYETGAPGKDGAAGKAKYVPRSPDELQKIEALVKGAVGFNQERGDQISIQNI 416

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F +       T    +   ++  F T+   L+  +G L +    +  +          +
Sbjct: 417 AFQDAGEAAGSTESAKWW--MNPFFLTLFKNLMIALGFLALMLFVVKPMLNTLRAARPAR 474

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            ++    +       SA                             R    +       L
Sbjct: 475 PDILEAIVPDAQEKMSA---------------------------SERAQLAMHMAEQQEL 507

Query: 532 LHMIEINEERFAKILRKWARS 552
           +   + N  + A+IL+ W   
Sbjct: 508 MEKAKTNPYQVAQILQNWLGE 528


>gi|46201261|ref|ZP_00055409.2| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 560

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 144/555 (25%), Positives = 256/555 (46%), Gaps = 7/555 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D +  F +    LG  R+  +A V +  +  F+     V +P  + LY  L++ D  +I 
Sbjct: 6   DDVNAFLQMLRGLGPMRLAAIAGVGVSILGFFIYLMSRVAAPQMELLYGDLDLGDSKQII 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L+   I + +  +G+ + VP       R+ +A Q LP+    +GYELFDK ++ G TS
Sbjct: 66  EKLTADKIPYELRKDGTEVWVPKDRKLDLRVRMAEQALPAGGRMAGYELFDKQDALGSTS 125

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182
           F Q IT VRALEGE+++TI+SI  + AARVH+V+P   +F +    P+ASV+I+      
Sbjct: 126 FQQNITMVRALEGELSKTIRSIDKVKAARVHLVLPKREAFSRDTQEPSASVIIKMNGSQR 185

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAIQHE 240
                  AI+HL+AAAVP +    ++++D  G LL              +  +    + +
Sbjct: 186 LDKGQVSAIQHLIAAAVPKMKPSRISIVDDKGTLLAKGFENSKEYQAQTAEDMKVKTEAK 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I   L   LG    R+ V  ++++      E  +DP++KV RS     + ++S+ +
Sbjct: 246 LVKTIEDLLERSLGPGRVRAEVTVDMDLSQATTTEETFDPETKVVRSQVTVNEGEQSQDA 305

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           +P + VTV+QN+P  +       R+    +K +E  NYEI+ K+ +T  +  ++ ++S A
Sbjct: 306 EP-TPVTVQQNLPDPNASSGGNIRTSTKINKNQETVNYEISRKTKSTVREMGEIRKVSAA 364

Query: 361 VVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           V+V+  R     G+    + +    L++I  +V +A G    R D + + SM F + +  
Sbjct: 365 VIVDGVREQSADGKQTSYRDRTAEELSQIEALVKSAIGYTKDRDDQVKVASMPFYKGEEL 424

Query: 420 NSGTVQVSFMDILSRHF-ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                   F+  + R F   + + L   V  +L   L L  L          +    G+ 
Sbjct: 425 LQAEEPGEFIFGMRRDFVEKIASNLGLSVVAILFLLLVLRPLISRAIESMQGQVGPDGRR 484

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
           +L+    +    TG       A     +++ +       ++   V   S  ++  ++E +
Sbjct: 485 LLTTDGGAMPQLTGPSGAAMPAPLGGEEEVIADELIDIDKVEGRVKASSIRKIGEIVEKH 544

Query: 539 EERFAKILRKWARSE 553
            E    I+R W   E
Sbjct: 545 PEEALSIIRNWLYQE 559


>gi|300114783|ref|YP_003761358.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113]
 gi|299540720|gb|ADJ29037.1| flagellar M-ring protein FliF [Nitrosococcus watsonii C-113]
          Length = 567

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 126/562 (22%), Positives = 243/562 (43%), Gaps = 33/562 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L     +   L   + + L   I   + L +    +  +P Y  +Y  +   +   I  
Sbjct: 24  RLAALQANIGRLSLQKQVGLLLAIAASVALVVGVVMWALAPTYQVMYGAVTGEEKGEIVA 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI++R+++N  +I VP+S V + R+ LA +GLP S +++G+EL ++   FG + F
Sbjct: 84  ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPRS-ADTGFELLEQNPGFGASEF 142

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183
           +++    RALEGE+ARTI +++ +  ARVH+ +P    F +    P+ASV++        
Sbjct: 143 LEKARYQRALEGELARTIGTLNNVRNARVHLALPKQSVFIRNRQAPSASVVLDLYAGRAL 202

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEI 241
                 AI HLV++++PNL+   VT++D  G LLT  +      +        + ++ + 
Sbjct: 203 DPGQVAAITHLVSSSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEYTRRLEEKY 262

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   LA  +G D  R+ VVAE++    +  +  Y+P+S   RS ++S++ +      
Sbjct: 263 IRRIQHILAPMIGSDKARAQVVAEVDFTVTEQTQEYYNPESAALRSEQMSEEERTGSRF- 321

Query: 302 PESAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           P+       N P    +                ++  T  +    NYE++     +    
Sbjct: 322 PQGIPGALSNQPPAEAQAPEVVPEANDDEAPIEAVPTTRSQRATRNYELDRTISHSRLSP 381

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS+AV+V++  + +  G  +   +    LA++  +V  A G N+ RGDTI + + 
Sbjct: 382 GSIRRLSVAVLVDEKAVADAEGTVSTVPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F+      S      +       F   +     ++  LL+    L    R         
Sbjct: 442 PFVPANEEESFPEPSLWQ---QDWFWQAVKQGGGVLAILLLLLGVLRPAFRRLTALP--- 495

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                 ++ + P      +   +  D ++L S+   +     +          + +   +
Sbjct: 496 ---ESVTLPAIPNKDEEKSDDGLQEDQLSLSSNKPTLRLAGPHSL--------EANLEIV 544

Query: 532 LHMIEINEERFAKILRKWARSE 553
             M   +  R A++++ W  S+
Sbjct: 545 RDMATGDSRRVAQVVKNWLVSD 566


>gi|167717602|ref|ZP_02400838.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98]
          Length = 476

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 206/472 (43%), Gaps = 18/472 (3%)

Query: 7   LLQFFKSGTSLGRTR---ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L  F +    L R +    L       + I   +A   +  +P Y  LY  L   D   I
Sbjct: 6   LGGFAERIPGLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             AL +AN+ ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++
Sbjct: 66  IAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGIS 123

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP- 182
            F +++   RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++      
Sbjct: 124 QFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGR 183

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
                   A+  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   
Sbjct: 184 VLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNT 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298
           +  I+  LA   G  N RS V A+++    +     Y P+   ++S   S+    S    
Sbjct: 244 QKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELA 303

Query: 299 TSQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            S          N P             +   P +   +D+K+  +NYE++         
Sbjct: 304 QSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQS 363

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              ++RLS+AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +
Sbjct: 364 MGTIKRLSVAVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVN 423

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
             F       +        D++           V      L       ALRR
Sbjct: 424 SAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 475


>gi|77165822|ref|YP_344347.1| flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707]
 gi|254434642|ref|ZP_05048150.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27]
 gi|76884136|gb|ABA58817.1| Flagellar FliF M-ring protein [Nitrosococcus oceani ATCC 19707]
 gi|207090975|gb|EDZ68246.1| flagellar M-ring protein FliF [Nitrosococcus oceani AFC27]
          Length = 567

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 245/563 (43%), Gaps = 33/563 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +L     +   L   + + L   I   + L +    +  +P Y  +Y  +   +   I  
Sbjct: 24  RLAALQANIGRLSLQKQVGLLLAIAASVALVVGIFMWSWAPTYQVMYGAVTGKEKGEIVA 83

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +ANI++R+++N  +I VP+S V + R+ LA +GLP S +++G+EL ++   FG + F
Sbjct: 84  ALQKANIEYRLAENTGAIMVPASKVHEVRLQLAMEGLPRS-ADTGFELLEQNPGFGASEF 142

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183
           +++    RALEGE+ARTI +++ +  ARVH+ +P    F +    P+ASV++        
Sbjct: 143 LEKARYQRALEGELARTIGALNNVRNARVHLALPKQSVFIRNRRAPSASVVLDLYAGRTL 202

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEI 241
                 AI HLVA+++PNL+   VT++D  G LLT  +      +        + ++ + 
Sbjct: 203 DPGQVAAITHLVASSIPNLESSGVTLVDQRGNLLTRQDRSQSLGMTEGQFEHTRRLEEKY 262

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   LA  +G +  R+ VVAE++    +  +  Y+P S   RS ++S++ +R+ +  
Sbjct: 263 ISRIQHILAPMIGSNKVRAQVVAEVDFTVTEQTQEYYNPGSAALRSEQMSEE-ERTGSRL 321

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSL----------ENTDKKEEQSNYEINTKSIATTHDN 351
           P+       N P    +                    T  +    NYE++     +    
Sbjct: 322 PQGIPGALSNQPPADAQAPETVPEANGDEAQIEPVPTTRSQRATRNYELDRTISHSRLSP 381

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS+AV+V++  +T+  G  +   +    LA++  +V  A G N+ RGDTI + + 
Sbjct: 382 GSIRRLSVAVLVDEKAVTDAEGAVSTLPRSPQELAQVTALVKEAVGFNAERGDTINVINA 441

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F+      +      +       F   +     ++  LL+    L    R         
Sbjct: 442 PFVPANEEEAFPELSLWQ---QDWFWQAVKQGGGILAILLLLLGVLRPAFRRLTALPEP- 497

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                 ++ + P      +   +  D ++L S+   +     +          + +   +
Sbjct: 498 -----VALSAIPNKDEEESDDGLQEDQLSLSSNKPTLQLSGPHSL--------EANLEIV 544

Query: 532 LHMIEINEERFAKILRKWARSEI 554
             M   +  R A++++ W  S++
Sbjct: 545 REMATGDSRRVAQVVKNWLVSDV 567


>gi|121602745|ref|YP_989390.1| flagellar MS-ring protein [Bartonella bacilliformis KC583]
 gi|120614922|gb|ABM45523.1| flagellar M-ring protein FliF [Bartonella bacilliformis KC583]
          Length = 553

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 207/556 (37%), Positives = 319/556 (57%), Gaps = 15/556 (2%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+   F  S       LG  R++ L  V +      + + F++  P ++ LYV L   
Sbjct: 1   MLDKFFVFLSSSGSALYKLGAKRLIALGLVGVTLFGTILFSSFYLTRPSHETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNRI +AL EA I F +S +G S+ VP      AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRIGMALGEAGIAFDVSSDGGSVQVPVGQAEHARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFR+   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQAVQGVKAARVHIVLPDKGSFRRANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAI 237
                  +SA++IRHLVAAAVP+L+   VTV+D+ G++L +  +          S+   +
Sbjct: 180 TDGGFSVESAQSIRHLVAAAVPSLEASSVTVMDTRGQMLASGVDAINGAPVVMASLEHQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V   L+ D +QI E ++DP+S+V RSIR  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVALDTDRRQINETIFDPESQVVRSIRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + S+   AV VEQN+P           S +  D++EE +NYEIN+K I+T  D Y +++L
Sbjct: 300 QNSRNSDAVGVEQNIPQEEIANGSGETSTDKKDRREETTNYEINSKIISTVRDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +IA+VV++ RL    G +   +  I+  +  I ++VSAA G++  RGD I +T++DF+ +
Sbjct: 360 AIAIVVDRARLVPANGETTVSEDFINDEVNRIQQMVSAAAGLDPNRGDIINVTAVDFIGH 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   ++      +SR+   V+N +  ++  LL+ FLG+  L R            G 
Sbjct: 420 NDADLTPIETPLWKSVSRYIPGVVNGVALVIAVLLILFLGVRPLMREMR--------EGQ 471

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           K+  S     + +      ++     +    +   + +    + + +      RL  MI+
Sbjct: 472 KARNSGENALAGLGAVPALDNQSQAAAGVGGVTKTNDDTLRDLRNRMRVPPQNRLEKMID 531

Query: 537 INEERFAKILRKWARS 552
           ++EERFA ILR+W   
Sbjct: 532 MDEERFAGILREWVND 547


>gi|15887871|ref|NP_353552.1| flagellar MS-ring protein [Agrobacterium tumefaciens str. C58]
 gi|15155457|gb|AAK86337.1| flagellar M-ring protein [Agrobacterium tumefaciens str. C58]
          Length = 566

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 266/555 (47%), Positives = 380/555 (68%), Gaps = 7/555 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +L+Q+ Q  K+  +LG+TR+L+L  V ++ + + +AA  +VN P Y+ LYV LE SD+
Sbjct: 7   MNLLNQIPQVLKNVAALGQTRLLMLGGVGVLSMAIILAAALYVNRPAYETLYVGLEKSDL 66

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           N+IS+AL+E+ +DF++  +GSS+ VP  +  KAR+ LA +GLP  S+N+GYELFD V S 
Sbjct: 67  NKISIALAESGLDFQVGTDGSSLQVPVGLTSKARLLLAERGLP-DSANAGYELFDNVGSL 125

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEI R+IQ I G+ AARVHIV+PD+G+FR+   +PTASVMIRA 
Sbjct: 126 GLTSFMQEVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGEQKPTASVMIRAS 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQH 239
             +  K++ +IRHLVA+AVP L++ DVT+LDSTG+LL + +   N    +SL++ Q +Q 
Sbjct: 186 ASAGRKASASIRHLVASAVPGLEVDDVTLLDSTGQLLASGDDVTNAAMNRSLTLAQNVQQ 245

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI+KALA FLG+DNFRS+V A++N D++Q++E VYDP+S+VERS+R  K+ Q+S+ 
Sbjct: 246 EITTNIDKALAPFLGIDNFRSSVTAQINTDSRQVQETVYDPESRVERSVRTVKEDQKSQE 305

Query: 300 SQPESAVTVEQNM-PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           +QP++A TVEQN+           P+S + + KKEEQ+NYEIN+K++AT  + Y LE++S
Sbjct: 306 TQPDTAATVEQNVPQAAPQGGGGGPQSSDQSAKKEEQTNYEINSKTVATVKNGYTLEKIS 365

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A GI+S RGD +T+T+MDFLE QL
Sbjct: 366 VAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVTSAAGISSDRGDIVTLTAMDFLETQL 425

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG----EV 474
            +        M++LSR+ A +IN+L F+    LV +LG+  L R    + +       E 
Sbjct: 426 LDEAASGPGVMEVLSRNSAGIINSLAFVAVAFLVVWLGVRPLVRTVTANGSAAAQLSQES 485

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G  +    P   A   GLM          + D      + +   N  V +  + RL  M
Sbjct: 486 AGLELPDFSPGMEAGAGGLMEGFGADFGFDSTDDLLAGGDGEGTFNRRVREGPERRLSRM 545

Query: 535 IEINEERFAKILRKW 549
           +EI+EER AKILRKW
Sbjct: 546 VEISEERAAKILRKW 560


>gi|116696304|ref|YP_841880.1| flagellar MS-ring protein [Ralstonia eutropha H16]
 gi|113530803|emb|CAJ97150.1| Flagellar M-ring protein [Ralstonia eutropha H16]
          Length = 576

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 117/563 (20%), Positives = 218/563 (38%), Gaps = 72/563 (12%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  SP Y  LY  L   D   +  +L + N+ ++ ++ G ++ VP+  V + R+ L
Sbjct: 39  VGVLWSRSPDYKVLYSNLSERDGGAVLQSLQQMNVPYKFAEGGGAVMVPAEKVHETRLRL 98

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A+QGLP S   +G EL D    FG++ F +++   R LEGE+AR+I+SI+ + +ARVH+ 
Sbjct: 99  ASQGLPKSG-TAGMELMDN-QKFGISQFAEQVNYQRGLEGELARSIESIAAVQSARVHLA 156

Query: 158 MPDMGSFRKIGARPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           +P    F +   +PTAS++++             AI HLV+++VP L    ++++D  G 
Sbjct: 157 IPKPTLFVRERQKPTASIVLQLYPGRAIDEGQVAAISHLVSSSVPELTPKSISIVDQHGN 216

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+    ER +    L  VQA++      I   L   +G DN R+ V A+++    +  +
Sbjct: 217 LLSNTGNERMLDATQLKYVQALEQNYLKRIEAILTPIVGKDNVRAQVTADVDFSIVEHTD 276

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRK------------- 319
             Y P+    RS   S+    S       P        N P  +                
Sbjct: 277 ESYKPNQDPTRSAIRSQQTSESTQQGVTPPGGVPGALSNQPPAAAAAPVTTPQTPRAGQA 336

Query: 320 ----------------------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                                            S  ++++++   NYE++          
Sbjct: 337 PGQAGAPAAGQPGQPGQAAQPGQGAQVANATASSGPSSNRRDSTVNYELDRSVRHVQQAP 396

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RLS+AVVVN  +  +  G+   +    + LA+I  +   A G ++ RGD+I + + 
Sbjct: 397 GGVRRLSVAVVVNYRQQADAKGKLVAEPLPPALLAQIQNLTKEAMGFSADRGDSINVVNS 456

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F   +   +  V +     +     T+   L+  +  L V F     + R +       
Sbjct: 457 PFTAEREKAAPEVPLWKQPDMIELGKTLAGYLLLALLALFVWFKVARPVLRRYTSPPLPA 516

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E   ++     P        ++                          +   +     +
Sbjct: 517 PEPRDETEAVLLPPDEPANPEILRL------------------------AAKYESDLALV 552

Query: 532 LHMIEINEERFAKILRKWARSEI 554
               + +    A +++ W  ++ 
Sbjct: 553 RDAAQRDPRLVASVIKNWIANDN 575


>gi|222053602|ref|YP_002535964.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32]
 gi|221562891|gb|ACM18863.1| flagellar M-ring protein FliF [Geobacter sp. FRC-32]
          Length = 522

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 130/556 (23%), Positives = 237/556 (42%), Gaps = 51/556 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +      SL  ++ LI+A V    ++ F A  F  N   Y  L+  L   D   I 
Sbjct: 3   EGLKKLLDPFLSLPTSKRLIVAGVAACSLLAFAALIFVANRTDYRPLFANLTTEDAGEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  + ++IS +G +I VPS  V + R+ LA +GLP      G+E+FD+ N FG+T 
Sbjct: 63  KKLKDQKVAYQISADGKAILVPSDKVYELRLSLAGEGLPQGGG-IGFEIFDRKN-FGMTE 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F+Q++   RAL+GE++RTI  ++G+  ARVH+V+P+   F+     PTASV+++  +   
Sbjct: 121 FVQKLNYQRALQGELSRTIAQLAGVEQARVHLVIPEKSLFKDSEKPPTASVVLKMKSNRT 180

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQH 239
                 + + HLV++A+  +D  +VTVLDS GK+L+    ++    +        +  + 
Sbjct: 181 LRENEVQGVVHLVSSAIEGMDTENVTVLDSRGKVLSRTGPSDATGKLTSTMQETQRNYEK 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +E  +   L   +G     + V A  +    +  E  YDP++   RS + S++   +  
Sbjct: 241 NLEERLQSLLDKVVGSGRSVARVSATFDFKQVEKYEEKYDPETAAVRSEQRSEEKAGATN 300

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                   V+ NM     R  P   +     K +E  NYE++  +         L ++S+
Sbjct: 301 I-AAGVPGVQTNM----GRTAPGAGTTGGGSKSDETLNYEVSRTTARIIEPVGSLTKVSV 355

Query: 360 AVVVNKGR-----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           A++V+              ++  Q +    L +I  +V ++ G N+ RGD +T+ ++ F 
Sbjct: 356 AILVDGKYEAPAAAKAGAAKAKYQPRTPDELQKIESLVKSSVGFNAERGDQVTVANIPFQ 415

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           E     S         I      T++  L+   G   + F  +  L R+           
Sbjct: 416 ETGDMGSAEDAWWNAPI----VMTLLKNLLIAGGFFAIIFFVIKPLMRMLPHRPP----- 466

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                                    +     +D+     N   +    +   + L L+  
Sbjct: 467 -------------------------SFQPVQEDLEMIQLNEAHKQELALQTLNQLELIEK 501

Query: 535 IEINEERFAKILRKWA 550
           ++ +  + A+IL+ W 
Sbjct: 502 VKQDPYQVAQILQNWL 517


>gi|258592505|emb|CBE68814.1| Flagellar basal body M-ring protein [NC10 bacterium 'Dutch
           sediment']
          Length = 539

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 126/549 (22%), Positives = 226/549 (41%), Gaps = 34/549 (6%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F +    LG T   +   V    +   +   F  + P    L+ +L  SD   I   L  
Sbjct: 12  FKQVWGGLGLTGRALTVLVGGGALTALLWMVFSTHRPDMTTLFSQLNPSDAGAIVDELKS 71

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + +R+ D G+ I VPS++V + R+HLA +GLP      G+E+FD+    G T F+Q +
Sbjct: 72  GKVSYRVVDGGTRILVPSAVVHEIRLHLATRGLPQGGG-VGFEIFDRTT-LGTTDFVQRL 129

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187
              RAL+GE+ARTI  +  + AARVH+ +P    F +     TASV+  +R       + 
Sbjct: 130 NYQRALQGELARTIGQLKEVTAARVHLALPQPSVFTEQEKPATASVVLNLRPGARLTPEQ 189

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHEIEMNI 245
              I HLV+++V  L+   +TV+D++GKL+      R   G        +A++ E+E  +
Sbjct: 190 VRGIVHLVSSSVEGLNADRITVVDTSGKLIARPAEGRLGAGSTGQFEAQEAVEGELERRV 249

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              L   LG +     V A+++  + +  E  +DP   V +S + + + Q+S T+ P + 
Sbjct: 250 RTMLEEILGPNKATVRVAAQMDFTSVERTEERFDPRG-VIKSEQRTTETQQSVTASPAAV 308

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             V  N+P  +       +S   + K+ E   Y+++           +L+R+S+AV+V+ 
Sbjct: 309 AGVASNVPDQTATPSQSGQSTAKSTKEAETVQYDVSKVLERKVFSPGELKRVSVAVMVDG 368

Query: 366 GRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
                  G+         +    L +I   V  A G ++ RGD + +    F  +     
Sbjct: 369 TYKPVPDGKGGERKEYVPRKSDELEKIKVAVKNAVGFSAARGDEVEVVEFPFDTSATEKE 428

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             +          +  +++  ++  VG LLV   GL  L R          +  G     
Sbjct: 429 RALMEEAERKAFWY--SLVKPVLMGVGVLLVLVFGLRPLIRSLKERRLPTFDTPGM---- 482

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                            +++            +    ++          L+ +   N   
Sbjct: 483 -----------------LSMSQPGPTAIETGPDQAPALDVASDDPLRTGLMELARNNPNV 525

Query: 542 FAKILRKWA 550
            A+++R W 
Sbjct: 526 VAQLVRAWM 534


>gi|238758092|ref|ZP_04619272.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236]
 gi|238703630|gb|EEP96167.1| Flagellar M-ring protein [Yersinia aldovae ATCC 35236]
          Length = 569

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 127/583 (21%), Positives = 235/583 (40%), Gaps = 58/583 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  + T L     + L       + + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTATLTRLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ VP+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLVPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F ++I   RALEGE++RTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVMNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D  G+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQMGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++   ++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFANREQTDEEYKPNQDANQGAVRSQQVSTSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSD----------------------------RKVPLPRSLENTD 330
                       N P ++                                    +  +  
Sbjct: 308 GTNVGGVPGALSNQPPIAPVAPIEAPQAAPAAGATANTANTANRPATTTAAKSSATSSNS 367

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           + ++ +N+E+N     T      ++RLS+AVVVN G                  LA++  
Sbjct: 368 RHDQTTNFEVNRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPIALTKDQLAQVES 423

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +   A G ++ RGDT+ + +  F  +      ++              ++NA  +L+  L
Sbjct: 424 LTREAMGFSTTRGDTLNVVNTPFSASDDTGGHSLPFWQQPSFFDQ---LLNAGRYLLILL 480

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           +   L    +R +         +    S+ +    ++A  T     + +AL   NQ   S
Sbjct: 481 VAWILWRKLVRPMIAKKQV--ADNAAASVNNIVQTAAASETAKQSKEELALRKKNQQKVS 538

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                         +    R+  + + +    A ++R+W  ++
Sbjct: 539 A-------------EVQAQRIRELADKDPRVVALVIRQWMSND 568


>gi|152997451|ref|YP_001342286.1| flagellar MS-ring protein [Marinomonas sp. MWYL1]
 gi|150838375|gb|ABR72351.1| flagellar M-ring protein FliF [Marinomonas sp. MWYL1]
          Length = 558

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 119/561 (21%), Positives = 222/561 (39%), Gaps = 35/561 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L+       L   R L L   +   I + +AA  + N P Y  +   +   + ++I   L
Sbjct: 15  LELVTGFNKLTVIRQLALMVGLAASIAIGLAAVLWSNGPDYKPVLSSITDYNADQIVEIL 74

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           S  NI F++  N  ++ V S    +AR+ LA  G+  S +  G E+ D+    G + F++
Sbjct: 75  SVNNIPFKLDQNTGALLVESDFYHQARLKLAGSGIV-SDNIVGMEIMDQEQGLGTSQFVE 133

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
                R LEGE++RTI S+  I +ARVH+ +P    F +   +P+ASV +          
Sbjct: 134 TTRYRRGLEGELSRTIASLQSIKSARVHLAIPKESVFVRDTRKPSASVFLELYPGRRLDK 193

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
              EAI +LVA+++  L   DVTV+D  G LLT  + +  +   GK     + ++  +  
Sbjct: 194 SQVEAIVNLVASSISQLSDKDVTVVDQRGTLLTEKDSDSELSVAGKQFDYARKVEEVLLQ 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +N  L   +G   F++ V A+++    +     Y+PD    RS +  ++  RS  +   
Sbjct: 254 RVNNILGPVIGQGRFKAEVSADVDFTAVEKTNEQYNPDLLALRSEQTLRE-NRSAGTSAS 312

Query: 304 SAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                  N P  +                   +     ++E   N+E++     T     
Sbjct: 313 GIPGALTNQPPGAVTIPEAVDENGAPIGGNTSAKNGQSREETTRNFELDRSISYTKRQQG 372

Query: 353 KLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            + RLS+AVVV+          +       D  L  +  +V  A G +  RGD++++ + 
Sbjct: 373 MVRRLSVAVVVDDLMSLNPDTSAIVRTPWNDDELGRLTLLVRDAVGYDPSRGDSVSVINS 432

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F    L +     +         F  +I   +  +  L++  + +  + +         
Sbjct: 433 PF---ALPDPEEPAIELPFYQQAWFLGLIQPTLVGIFVLILLLVVVRPILKTL------S 483

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            +              +  T  + +D ++L S+   +   S     R            +
Sbjct: 484 EQNKIAVTEDTEAAIFSDETDEISDDQVSLVSAEDILVPGSPEKIDR--------QLNAI 535

Query: 532 LHMIEINEERFAKILRKWARS 552
             +I    ER A+++++W   
Sbjct: 536 RGLIAEEPERVAQVVKQWVME 556


>gi|119476321|ref|ZP_01616672.1| flagellar M-ring protein FliF [marine gamma proteobacterium
           HTCC2143]
 gi|119450185|gb|EAW31420.1| flagellar M-ring protein FliF [marine gamma proteobacterium
           HTCC2143]
          Length = 562

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 118/556 (21%), Positives = 223/556 (40%), Gaps = 28/556 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F     ++G  R L L   +   + +  A   +     Y  LY  L+  D   +   L
Sbjct: 18  NDFLNGLGNIGILRQLFLMVGLAASVAMGGAIVLWSVGEEYRPLYSSLDHMDPGEVLNIL 77

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
             + ID ++ +N  ++ V +  +  AR+ LA  G+    S  G+E+ DK    G + FM+
Sbjct: 78  QSSQIDHKVDENTGALLVAADQIHDARLKLAGAGISPDGS-FGFEMLDKEQPLGTSQFME 136

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ RTI SI  +  ARVH+ +P   +F +   +PTASV +     +    
Sbjct: 137 SARFKRGLEGELGRTIASIQAVRGARVHLAIPKTSAFIRDVRKPTASVFLDLYGGSGINT 196

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEM 243
           +   AI ++VA ++P L + +VTV+D  G LL+    + +  +  K L  V+ ++  +  
Sbjct: 197 EQVRAIANMVAFSIPELTIQNVTVVDQRGNLLSNFDADQDMAMAHKQLDYVREMEGRLVK 256

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG  NFR+ + A ++    +  + +++PD    RS +  ++ +        
Sbjct: 257 RVSSILEPVLGEGNFRAEISANVDFTQVEQTDELFNPDLPAIRSEQTVEEGRGGGGVGGV 316

Query: 304 SAVTVEQNMPHVSDRKVPLP--------RSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                  N P    +                 +T +++   NYE++     T H   +L 
Sbjct: 317 PG--ALSNQPPRDGQAPEQIVDGGAAALAESVSTSRRQSVRNYELDRTISHTRHQVGRLR 374

Query: 356 RLSIAVVVNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           RLS+AV+V+     +   G         S L ++  +V  A G ++ RGD++ I +  F 
Sbjct: 375 RLSVAVLVDNTTNIDSETGEIVSVAIEQSELDQLAILVRDAVGFDAARGDSVNIINSAF- 433

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                      V   ++      T+   + +    +L+  L    +R           E+
Sbjct: 434 ---AVKEAPEVVPMEEVPIWQQPTIERYIKYAGAFVLIMMLLFFVMRPAFRNLTDGSKEL 490

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                       S      + ++ + L      + S          +   +Q    +  +
Sbjct: 491 RELEAQRALGDLSGDLGSGLADETVTLSGGESLLLSGP--------NKNYEQQLSTVRGL 542

Query: 535 IEINEERFAKILRKWA 550
           I  +  R A++++KW 
Sbjct: 543 IAEDPGRVAQVVKKWV 558


>gi|253702508|ref|YP_003023697.1| flagellar M-ring protein FliF [Geobacter sp. M21]
 gi|251777358|gb|ACT19939.1| flagellar M-ring protein FliF [Geobacter sp. M21]
          Length = 522

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 126/556 (22%), Positives = 237/556 (42%), Gaps = 48/556 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  +   +L   + L++  V L  ++ F A     N   Y  L+  L   D   I 
Sbjct: 3   EGLKKLLEPFLALSSAKRLVVGGVALASLLGFAALIAVANKTDYRPLFANLTQEDAGEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  + ++IS +G +I VPS  V   R+ LA+ GLP      G+E+FD+ N FG+T 
Sbjct: 63  KKLKEQKVPYQISPDGKAILVPSDNVYDLRLSLASDGLPQGGG-IGFEIFDRKN-FGMTE 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F+Q++   RAL+GE+ RTI  I+G+ +ARVH+ +P+   F++     TASV+I+  +   
Sbjct: 121 FVQKLNYQRALQGELGRTIAQIAGVESARVHLALPEKALFQEQEKPATASVVIKMKSNRQ 180

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQH 239
            +    + + HLVA+++  +D   VTVLD+ GK+L+++   +    + G      +A + 
Sbjct: 181 LREGEVQGVVHLVASSIEGMDPEQVTVLDTRGKVLSSHSSNDPTSKLAGARQDTQRAFEK 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++     +
Sbjct: 241 TEEEKLQSLLDRVVGSGKSVARVSASFDFKQVEKYEERYDPESAAVRSEQRSEEK-GGIS 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +    A  V+ NM     R      +     K +E  NYE++  +         L ++S+
Sbjct: 300 TTASGAPGVQTNM----GRAQGAAGTTGGGSKTDETLNYEVSRSTARIVEPVGSLSKVSV 355

Query: 360 AVVVNKGRL----TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           A++V+         +       Q +    + +I  +V +A G N+ RGD +T+ ++ F +
Sbjct: 356 AILVDGKYELAPGAKPDAAPKYQPRSPDEMQKIEALVKSAVGFNAERGDQVTVANIPFQD 415

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                          ++     T+I   +  +  L + F  +  L +L  I+      + 
Sbjct: 416 TGDQVGEPPAWYDAPVVQ----TLIKNGLIGLAFLALLFYVIRPLMKLLKIEKPAHHFLP 471

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
            +       +                                ++     + + L L+  +
Sbjct: 472 IQDDAEQAQLLEM----------------------------QKVEHEKMRITQLELVEKV 503

Query: 536 EINEERFAKILRKWAR 551
           + +  + A+IL+ W  
Sbjct: 504 KQDPYQAAQILQNWLT 519


>gi|205352337|ref|YP_002226138.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272118|emb|CAR36971.1| flagellar basal-body M-ring protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627387|gb|EGE33730.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 558

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 126/572 (22%), Positives = 225/572 (39%), Gaps = 54/572 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R  LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELR--LAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 129

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 130 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 189

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 190 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 249

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   +   E  Y P+    ++   S+    SE      P  
Sbjct: 250 ILSPIVGNGNVHAQVTAQLDFANKDQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 309

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 310 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNSAGPRNTQRNETSNYEVDRT 369

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 370 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 425

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+R  
Sbjct: 426 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQ 481

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 482 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 529

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             Q   R+  M + +    A ++R+W  ++ E
Sbjct: 530 MSQ---RIREMSDNDPRVVALVIRQWMSNDHE 558


>gi|91978309|ref|YP_570968.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB5]
 gi|91684765|gb|ABE41067.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB5]
          Length = 532

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 139/551 (25%), Positives = 232/551 (42%), Gaps = 26/551 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LG  R++ + +V +  +  F      V+ P    LY  L V D + I   
Sbjct: 1   MQSLLGFLKGLGAARVMAMIAVTVALLGFFAFVIMRVSQPQMTTLYTDLSVEDSSSIIKE 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F + + G+++ VP   V + R+ LA           GYE+FDK ++ G TSF+
Sbjct: 61  LERQAIPFEMRNEGTTLMVPKDKVTRLRMKLAEG-GLPKGGGVGYEIFDKSDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+ARTI++I  I  ARVH+V+P+   F +    P+AS+++R       +
Sbjct: 120 QNINHLRALEGELARTIRAIDRIQQARVHLVLPERPLFSRETPEPSASIVLRVRGALEPQ 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMN 244
              AIRHLVA+AV  L    V+++D  G+LL                    + +  +   
Sbjct: 180 QVRAIRHLVASAVNGLKPQRVSIVDEGGQLLADGSASANAADGAAGDERRTSFEKRMRNE 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +++ +G    R  V A+ + +        +DP+ +V RS +  ++  +S+TS  + 
Sbjct: 240 IEGIVSSVVGSGRARVQVTADFDYNKITQTSDKFDPEGRVLRSSQTREE--QSQTSAADG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VTV   +P    +    PR  + + K EE +NYEI+  +     +  ++ RLS+AV+V+
Sbjct: 298 QVTVNNELPGNQGQAGTGPR--DQSKKSEETNNYEISRITKTEVTEAGRVNRLSVAVLVD 355

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G      +    L  I  +V +A G + +RGD I + ++ F E         
Sbjct: 356 GIYTKNEKGELVYAERPKEQLDRIAALVRSAIGFDQKRGDQIEVVNLKFAEAPQVEKLPE 415

Query: 425 QV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
           Q                +I   V LV  L+V F+ +  L +     D      G  ++  
Sbjct: 416 QAGLLGMFQFTKDDIMNMIQLGVMLVLGLVVLFMVIRPLVKRVLASDPGPEGPGLPALT- 474

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                          D              S    +++   V  QS  R+  + + N   
Sbjct: 475 ---------------DGSVPQIGADGQPQPSMIDIAQVQGQVHAQSVHRVGELADRNPNE 519

Query: 542 FAKILRKWARS 552
            A I+R+W   
Sbjct: 520 TAAIVRQWLAE 530


>gi|268589960|ref|ZP_06124181.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131]
 gi|291314677|gb|EFE55130.1| flagellar M-ring protein FliF [Providencia rettgeri DSM 1131]
          Length = 561

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 115/533 (21%), Positives = 222/533 (41%), Gaps = 36/533 (6%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              ++ SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA
Sbjct: 44  LLLWLRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +
Sbjct: 104 QSGLPK-GGNTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    PTASV +              AI H+V+++V  L   +V ++D  G+L
Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTASNVIIVDQAGRL 221

Query: 217 LTANEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT N+  +       + + + ++  ++  I   L+  +G  N  + V A+++    +   
Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMESHLKQRIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281

Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSD-------------RK 319
             Y P+   + +   S+   +S                N P  +               +
Sbjct: 282 EEYKPNQTPDSAAIRSRQNSQSMQNNNGGTGGVPGALSNQPVSAPSAPIETNKDNKDGAQ 341

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
               R+  +  + +E +NYE++ K   T      ++RLS+AV+VN        G    + 
Sbjct: 342 TANNRNSVSNSQSDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYHSQDGENG-PEMKP 400

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
                L +I  +   A G ++ RGD++ IT+  F       +   +   +    +  A +
Sbjct: 401 LPPEMLQQIEALTREAMGFSTARGDSLNITNSLFTN----EAPVEEAPSLLESPQFIAQL 456

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           ++    L+  ++  F+    ++         +       +     + + +      ++ +
Sbjct: 457 LDYGKILLIAIIAWFMWRFGIKPQWVKYRKAQQAQAEAEVFVATQLKTPLVVDEAIDEEM 516

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
              +  +                       R+  M E + +  A ++R+W   
Sbjct: 517 DEQTRRRLTRQRVSAEIQS----------QRIREMAEKDPQIVAMVIRQWLGK 559


>gi|30250023|ref|NP_842093.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30139130|emb|CAD85994.1| fliF; flagellar M-ring transmembrane protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 548

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 118/566 (20%), Positives = 214/566 (37%), Gaps = 46/566 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
            +          L   + L L       I L      +  SP Y  LY  L   +   I 
Sbjct: 12  KKTFSQLDKIKQLPTQKKLGLMVAAAAVIALIAGTWLWSQSPDYRVLYASLSDQEGGAII 71

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL + N+ ++ S++G SI +P+S V + R+ LA QGLP   + SG+E+  +   FG + 
Sbjct: 72  EALQKMNVPYQFSESGGSILIPASQVHEVRLRLAGQGLPK-GNLSGFEIL-ENQKFGSSQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182
           F++++   RALEGE++R+IQS+S +  ARVH+ +     F +   +P  SV++       
Sbjct: 130 FLEQVNYQRALEGELSRSIQSLSAVQGARVHLAIAKPSVFTRERPQPRVSVLLNLHPGRM 189

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239
              +   AI HL+++++P++ + +VTV+D  G LL+  +    E  +    L  VQ ++ 
Sbjct: 190 LSTEQVSAIVHLISSSIPDMPVKNVTVVDQQGNLLSGQKDNQAETGLDPGQLKYVQDMEQ 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS---IRLSKDAQR 296
                I   L    G DN  + V A+++    +  E +Y P++    +       +    
Sbjct: 250 NFVRRIEAILTPITGEDNVHAQVTADVDFSRIERAEEIYKPNNNPAEAAAVRSQQQSESV 309

Query: 297 SETSQPESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATT 348
           S +           N P                  ++     ++E  +NYE++     T 
Sbjct: 310 SISQPEGGVPGALSNRPPAPAEAPIEAKQSSEAAAKTTPTDTRRESTTNYEVDKTISHTR 369

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               ++ RLS AVV+N     +  G  A++      + +I  +V    G +  RGDT+T+
Sbjct: 370 QATGRINRLSAAVVINYRTKLDTEGNPANEPLSGEEIEKITALVKQTIGFDETRGDTLTV 429

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           T+  F                D          +    L+   +V F      R       
Sbjct: 430 TNSQFNLKGDSLEELPPWKDPDT----VLLAKDIGKQLLIAAIVLFFLQKIFRPFLR--- 482

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                                     P        + ++   HS    S +     +++ 
Sbjct: 483 ---------------------NLLPPPPPPPVPALAVKNGLEHSEAEVSTVRVVTLEENL 521

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
            +   +        A +++ W     
Sbjct: 522 EKARLLAVTEPAIVANVVKGWVSGNE 547


>gi|197104328|ref|YP_002129705.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1]
 gi|196477748|gb|ACG77276.1| flagellar M-ring protein FliF [Phenylobacterium zucineum HLK1]
          Length = 548

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 131/551 (23%), Positives = 230/551 (41%), Gaps = 10/551 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   +    G  R+  +  +      +  A    +  P    LY  L++ +   I+ A
Sbjct: 1   MNQLLAAIQRFGIGRLAAILGIGAGLAAVLFAMTMGLGEPK-ALLYSNLDLKEAGSITQA 59

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A I + +  +GS+I V    V   R+ L+++GLP++ S  GYE+FD   + G T F+
Sbjct: 60  LDQAGIKYEVKGDGSTILVGRDKVAATRLMLSSRGLPTAGS-VGYEIFDDAKALGQTDFV 118

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185
           Q++ R RALEGE+ARTI+S+ GI +ARVH+V+P    F++   +P+ASV I     +   
Sbjct: 119 QQLNRQRALEGELARTIRSLDGITSARVHLVLPKRQLFQEEAEQPSASVNIGVGGRAPSP 178

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
           +   AI++L+A AVPNL    VTV+D   K L+  +    +  ++ S    ++  I   +
Sbjct: 179 EQVRAIQNLIAGAVPNLRPDRVTVVDQHAKTLSGGDTG--MAAEADSRKSEVEQRIAKQV 236

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              +   +G    R  V AEL +    +++  +DPD +V RS   + +  R         
Sbjct: 237 KNLIEGVVGPGKARVNVSAELELARVTVQQETFDPDGQVIRSESTTDENSRENQEDGAGQ 296

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             V  N+P  +            + ++E  +NYEI+        +  +++RLS+AV V+ 
Sbjct: 297 AGVAGNLPGAAALGGGGLVGS-QSGRQESTTNYEISKTVRTEVQEPGQVKRLSVAVAVDG 355

Query: 366 GRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                  G+  A   +    +  I ++V  A G N  RGD +++ ++ F           
Sbjct: 356 VTAIGADGQPGAYTPRTAEEMQRIEQLVRTAVGFNQDRGDQVSVINVRFPTPDTVGGVEA 415

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
               M          +   V  +  +L+       L +           +          
Sbjct: 416 ANPLMGFDKNDIMRAVEIGVMAIVGILMLIFVARPLLKSATGGGGGGLPMMMGGPQVTRV 475

Query: 485 ISSAVTTGLM---PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
           +++A    +                     S+   +RI   V   S  R+   +E + E 
Sbjct: 476 VTTADGQPMQIAADGTAQLALPGPGHTELESKIDMARIEGQVKASSVKRVAEFVEKHPEE 535

Query: 542 FAKILRKWARS 552
              ILR W   
Sbjct: 536 SVAILRSWLHE 546


>gi|319944162|ref|ZP_08018438.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC
           51599]
 gi|319742457|gb|EFV94868.1| flagellar basal-body M-ring protein FliF [Lautropia mirabilis ATCC
           51599]
          Length = 574

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 110/561 (19%), Positives = 219/561 (39%), Gaps = 40/561 (7%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              +     +   + ++    + ++A  +   P +  LY  L   +   +   L + N+ 
Sbjct: 23  FAQMPAATKIKAGAGVIALGAVAVSAWLWSQQPDWKVLYNNLPDREGGAVIAQLVQMNVP 82

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++ ++ G +I VP++MV  AR+ LAAQGLP+S   +GYEL +K   FG T F + +   R
Sbjct: 83  YKYTEGGGAIMVPANMVNDARLRLAAQGLPASD-TTGYELLEK-QRFGTTQFQERLNFQR 140

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191
            LEGE+AR+IQS++ +  ARVH+ MP    F +   +P+ASVM+        +    + I
Sbjct: 141 GLEGELARSIQSLAAVKQARVHLAMPVQSGFLREQQKPSASVMLTLYPGRTLERGQVQGI 200

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALA 250
             LVA++VP++    V+V+D  GKLL+  +     +    ++    I+  +   I+  LA
Sbjct: 201 LALVASSVPDMSPKQVSVVDQYGKLLSDLDGDGSEMNTAQINYRNRIESTLTRRIDDLLA 260

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ-----RSETSQPESA 305
             +G  N R+ V A+++    +     Y P+     +   S+           +      
Sbjct: 261 PIVGDGNIRAQVAADIDFTQSEATAETYAPNQNPGAAAMRSQQTMASRDGSGASDAAGGV 320

Query: 306 VTVEQNMPHVS---------------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                N P  +                           + ++E  +NYE++     T + 
Sbjct: 321 PGALSNQPPATVSAPINGAAQATRAAGSASSADGGTGVSTRQESVTNYEVDRTVKVTRNQ 380

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              + RLS+AV+VN+ +     G+          +  I  +V  A G ++ RGD++ + +
Sbjct: 381 TGTIRRLSVAVLVNQKQTKGDDGKEVSTPLTPLEMQSIEALVKQAVGFSAERGDSVQVVN 440

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F +        V +            +     F++  L++  + +    +        
Sbjct: 441 AAFTKRPEVVDPEVPLWKDPETVSLAKDLGKQFGFVLLALIILMMFIRPALQAMKKPAPA 500

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
            G      +     + S   +       + ++       + +++                
Sbjct: 501 AGNNLDAKVDEQLELPSPEGSTKGGVQRLEVNPEQGMGMTIAQHNAL------------- 547

Query: 531 LLHMIEINEERFAKILRKWAR 551
              +   +    A ++R W  
Sbjct: 548 --QLARTDPTAVATVVRNWVN 566


>gi|167835057|ref|ZP_02461940.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43]
          Length = 486

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 194/442 (43%), Gaps = 15/442 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 46  WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++SI+ + AARVH+ +P  
Sbjct: 106 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESINAVRAARVHLAIPKP 163

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              A+  +V+++VP++   +VT++D  G LLT 
Sbjct: 164 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAVTRMVSSSVPDMPAKNVTIVDQDGNLLTQ 223

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N R+ V A+++    +     Y 
Sbjct: 224 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARAQVSADVDFSKIEQTSESYG 283

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    +     S          N P             +   P +   
Sbjct: 284 PNGTPQQSAIRSQQTSTATELAQSGASGVPGALSNTPPQPASAPIVASNGQPAGPAATPV 343

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN     +  GR   Q      LA++
Sbjct: 344 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPAADAKGRVTMQPLAADKLAQV 403

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 404 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 463

Query: 449 TLLVTFLGLHALRRLHNIDDAK 470
             L       ALRR        
Sbjct: 464 AALYFMFVRPALRRAFPPPAQP 485


>gi|156933442|ref|YP_001437358.1| flagellar MS-ring protein [Cronobacter sakazakii ATCC BAA-894]
 gi|156531696|gb|ABU76522.1| hypothetical protein ESA_01260 [Cronobacter sakazakii ATCC BAA-894]
          Length = 565

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 132/576 (22%), Positives = 231/576 (40%), Gaps = 57/576 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +   P Y  LY  L   D   I   L++ 
Sbjct: 15  VEWLNRLRANPKIPLMVAGAAAVAIIVALVLWAKQPEYRVLYSNLSDQDGGAIVTQLTQM 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +  +DNG+SI VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 75  NIPYNFADNGASIMVPAEKVYDLRLRLAQQGLPKGGA-VGFELMDQE-KFGISQFSEQVN 132

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
             RALEGE+ARTI+++  +  ARVH+ MP    F +    P+ASV   ++          
Sbjct: 133 YQRALEGELARTIETLGPVKNARVHLAMPKPSLFVREQKSPSASVTLNLQPGRALDDGQV 192

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247
            AI H+V++AV  L  G+VT++D TG+LLT +      +    L     ++  I+  I  
Sbjct: 193 AAIVHMVSSAVAGLPPGNVTLVDQTGRLLTQSGTGARDLNDAQLKYASDVEGRIQRRIES 252

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            LA  +G  N  + V A+++   ++  E  Y P+S   +    S+    ++      P  
Sbjct: 253 ILAPIVGTGNVHAQVTAQIDFSNKEQTEEQYRPNSDPSQMAVRSRQLNTNDQVGGAYPGG 312

Query: 305 AVTVEQNMPHV--------------------------SDRKVPLPRSLENTDKKEEQSNY 338
                 N P                                     S  ++ +++E +NY
Sbjct: 313 VPGALSNQPAPANSAPIDAPAGQNNGQNANGQNAQRTQSTSTAGASSGPHSSQRDETTNY 372

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN  +L    G           L +I  +   A G 
Sbjct: 373 EVDRTIRHTKMNVGDVQRLSVAVVVNYRQL----GNGKPLALTAEQLKQIEDLTREAMGY 428

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGDT+ + +  F  +                      +++A  +LV  ++   L   
Sbjct: 429 SDKRGDTLNVVNSQFTASDESGGELP----FWKQQAFIDQLLSAGRWLVVLIVAWLLWRK 484

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R        +   V                      +       ++D  +  R    R
Sbjct: 485 AVRPQLQRRAEEVKRVQEMQQQRK------------EVEESVEVRLSKDEQTQQRRANQR 532

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +++ V  Q   R+  M + +    A ++R+W  +E+
Sbjct: 533 LSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNEL 565


>gi|167892353|ref|ZP_02479755.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894]
          Length = 495

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 202/469 (43%), Gaps = 15/469 (3%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +     L       + I   +A   +  +P Y  LY  L   D   I  AL +AN+
Sbjct: 29  GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 88

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++ F +++   
Sbjct: 89  PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 146

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190
           RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++              A
Sbjct: 147 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 206

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           +  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   +  I+  LA
Sbjct: 207 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 266

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307
              G  N RS V A+++    +     Y P+   ++S   S+    S     S       
Sbjct: 267 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 326

Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              N P             +   P +   +D+K+  +NYE++            ++RLS+
Sbjct: 327 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 386

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +  F      
Sbjct: 387 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 446

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +        D++           V      L       ALRR      
Sbjct: 447 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPA 495


>gi|240137205|ref|YP_002961674.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1]
 gi|240007171|gb|ACS38397.1| Flagellar M-ring protein FliF [Methylobacterium extorquens AM1]
          Length = 559

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 190/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G +L A +       GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
                P  +A  T  +     AL  S +     S     L   +   +++    RL  +I
Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPSPGVAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|220925883|ref|YP_002501185.1| flagellar MS-ring protein [Methylobacterium nodulans ORS 2060]
 gi|219950490|gb|ACL60882.1| flagellar M-ring protein FliF [Methylobacterium nodulans ORS 2060]
          Length = 541

 Score =  356 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 134/551 (24%), Positives = 242/551 (43%), Gaps = 16/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +          G  R+  + +V L  +  F      V+ P    LY  L + D + +   
Sbjct: 1   MKPVLDLVAKFGPARLAAMGAVTLTLVGFFAFVILRVSRPEMGVLYADLSMQDASAVIRD 60

Query: 67  LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L    + +      G +I  P + + + R+ LA +GLPS+    GYE+FDK ++F  T+F
Sbjct: 61  LDARGLRYETRGEMGQTILAPRADLARLRMDLAGKGLPSAGG-VGYEIFDKGDAFSSTTF 119

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +  +RALEGE+AR+I++I  + AAR+H+V+P+   F +    P+A+++++       
Sbjct: 120 VQNVNHLRALEGELARSIRAIGRVQAARIHLVIPEKRLFARDREPPSAAIVLKLSGDLDP 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHEIEM 243
               A+RHLVA++V  L    ++++D  G+LL       +  G+         ++H +  
Sbjct: 180 GQVRAVRHLVASSVEGLKPDRISIVDERGRLLADGAKPEDAQGRLGLDERQANLEHRLRA 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +A  +G    R  V AEL+ +  + R   +DP+S+V RS +   + Q+S+     
Sbjct: 240 QVEGIVAGIVGSGRARVQVAAELDANRIESRSETFDPESRVVRSTQTRSETQQSQGPGET 299

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N    +        + E ++K EE +NYEI+  +    ++  ++ RLS+AVV+
Sbjct: 300 GV--SVGNELPGARDPAQQNGTREASNKNEETTNYEISRVTRTEINEGGRIRRLSVAVVI 357

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        GR     +    L  I  +V  A G +  RGD I + ++ F E  +     
Sbjct: 358 DGTYTPGPDGRPVYAPRPQDELDRITALVRTAVGYDKARGDQIEVVNLRFAEGPVPAEIP 417

Query: 424 VQ--VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            +  ++           +    V  + TL+V    +  L R     DA   E+    I  
Sbjct: 418 EEGLLASFKPTKEDVLRLAELGVLALLTLVVVLAVVRPLLRRVIAVDAPPAELVAAGIPV 477

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
            P        G +P    A D+   D  +      +RIN  +  ++  R+  ++  N   
Sbjct: 478 LP--------GALPGAAPAEDAPPPDSPAKHLVDFARINGKLQAETIERVADIVRQNPAE 529

Query: 542 FAKILRKWARS 552
            A++LR W   
Sbjct: 530 TAEVLRNWIND 540


>gi|306841269|ref|ZP_07473980.1| flagellar M-ring protein FliF [Brucella sp. BO2]
 gi|306288671|gb|EFM60002.1| flagellar M-ring protein FliF [Brucella sp. BO2]
          Length = 542

 Score =  356 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 203/531 (38%), Positives = 307/531 (57%), Gaps = 4/531 (0%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91
            +   +    ++  P Y+ LYV L   DVNR+ +AL EA I F +  +GSSI VP     
Sbjct: 1   MMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAE 60

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            AR++LA +GLP+S+ N+GYELFD + S GLTSFMQEITRVRALEGEIARTIQ+I G+ A
Sbjct: 61  NARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKA 119

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211
           ARVHIV+ + GSFR+   +P+ASV+IRA      +SA++IR LVAAAVP+LD   VTVLD
Sbjct: 120 ARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQSIRQLVAAAVPSLDASSVTVLD 179

Query: 212 STGKLLTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
           + G LL +     N     + S+ Q +   ++ +I KALA +LG+ +F+++V A L+ D 
Sbjct: 180 TNGHLLASAGEGANGAALMTASLEQQVASHVDDSIRKALAPYLGLGHFQTSVQAALDTDR 239

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +Q +E  YDP+S+VERS+R+ +++  S  ++ ++A  VEQN+P    +      S E TD
Sbjct: 240 RQTKETTYDPESRVERSVRVVRESGDSRNNRNDNATGVEQNIPQEQIQNRNGESSTEKTD 299

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG-KIDSYLAEIN 389
           ++EE +NYE+N+K+++T  D Y ++RLSIAVV+++ RL +  G +      +D  + +I 
Sbjct: 300 RREELTNYEVNSKTVSTVSDGYSIKRLSIAVVIDQARLLQTAGTTPPPANFVDQQITKIR 359

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +V+ A G+N+ RGD I +T+++FL+    +   V   + D L R   +  NAL  L   
Sbjct: 360 DLVATAAGLNANRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYANALAILAAV 419

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
            L+ + GL  L R  N+  A       ++     P        +       +        
Sbjct: 420 GLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGSAESVGEGAQAVIGGPA-AYA 478

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
              +   S +   +   + LRL  MIE++EER A +L++W       R   
Sbjct: 479 DQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGREAD 529


>gi|163850071|ref|YP_001638114.1| flagellar MS-ring protein [Methylobacterium extorquens PA1]
 gi|163661676|gb|ABY29043.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1]
          Length = 559

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G +L A +       GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
                P  +A  T  +     AL  S +     +     L   +   +++    RL  +I
Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGIAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|167917106|ref|ZP_02504197.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215]
          Length = 490

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 202/463 (43%), Gaps = 15/463 (3%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +     L       + I   +A   +  +P Y  LY  L   D   I  AL +AN+
Sbjct: 27  GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 86

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++ F +++   
Sbjct: 87  PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 144

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190
           RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++              A
Sbjct: 145 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 204

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           +  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   +  I+  LA
Sbjct: 205 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 264

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307
              G  N RS V A+++    +     Y P+   ++S   S+    S     S       
Sbjct: 265 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 324

Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              N P             +   P +   +D+K+  +NYE++            ++RLS+
Sbjct: 325 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 384

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +  F      
Sbjct: 385 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 444

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            +        D++           V      L       ALRR
Sbjct: 445 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 487


>gi|167822258|ref|ZP_02453729.1| flagellar MS-ring protein [Burkholderia pseudomallei 9]
          Length = 488

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 202/463 (43%), Gaps = 15/463 (3%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +     L       + I   +A   +  +P Y  LY  L   D   I  AL +AN+
Sbjct: 25  GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 84

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++ F +++   
Sbjct: 85  PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 142

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190
           RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++              A
Sbjct: 143 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 202

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           +  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   +  I+  LA
Sbjct: 203 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 262

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307
              G  N RS V A+++    +     Y P+   ++S   S+    S     S       
Sbjct: 263 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 322

Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              N P             +   P +   +D+K+  +NYE++            ++RLS+
Sbjct: 323 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 382

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +  F      
Sbjct: 383 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 442

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            +        D++           V      L       ALRR
Sbjct: 443 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 485


>gi|218528674|ref|YP_002419490.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4]
 gi|218520977|gb|ACK81562.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum
           CM4]
          Length = 559

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 189/560 (33%), Positives = 308/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G +L A +       GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
                P  +A  T  +     AL  S +     +     L   +   +++    RL  +I
Sbjct: 479 GPEGAPALAADGTMALAAPGAALPGSGEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|260222430|emb|CBA31986.1| hypothetical protein Csp_D29860 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 579

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 125/564 (22%), Positives = 225/564 (39%), Gaps = 37/564 (6%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             +  T+L + + + LA  I + + + +          +  LY  L   D   +   L+ 
Sbjct: 30  LGQRLTALDQGQRIRLALGIALFVAIAVVGLVMGRQAEWRVLYSNLADKDGGAVIAQLTT 89

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ ++ G +I VP+  V   R+ LA+QGLP   S SG+E+  + N FG+T F + +
Sbjct: 90  MNVPYKYTEGGGAILVPADRVHDVRLKLASQGLPK-GSVSGFEMM-EANRFGMTQFQERL 147

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--S 187
           T  R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 148 TFQRGLEGELTRSIQALSSVSSARVHLALPNQNGFFREQQKPSASVLLSLHPGRALDKGQ 207

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNIN 246
              I HLVA++VP ++   V+VLD TGKLL+A  +    +  + L  VQ I+      I 
Sbjct: 208 LAGIVHLVASSVPEMNPSAVSVLDDTGKLLSANPDAAAGVDAEQLQYVQQIEQLYSRRIL 267

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKV----ERSIRLSKDAQRSETSQP 302
             L   +G  N ++ V AEL+    +     + P+        RS +L +    ++ + P
Sbjct: 268 DMLEPLVGKQNVKAQVTAELDFSQTESTTESHKPNQTPDSGAVRSQQLVESTNGTQPTPP 327

Query: 303 ESAVTVEQNMPHVSDRKVPLPR-------------SLENTDKKEEQSNYEINTKSIATTH 349
                   N P          +             S  ++ KKE   NYE++     T  
Sbjct: 328 AGVPGATTNQPPAQPAAPINGQPQTLAANGQTAAGSTNSSSKKESIINYEVDKTIRVTKG 387

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++R++ AVV+N   +T+  G +      ++ L ++  +V    G N  RGD++ + 
Sbjct: 388 AVGAIKRINAAVVLNNQSVTDAKGVTTSVALTEAQLEKMTALVRETVGFNQDRGDSVNVV 447

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F   +        V     +     ++   L  L    LV    +    +       
Sbjct: 448 NAPF-APEKAEVNDTPVWRQPEVQELARSLAWPLGTLGLAALVLLGVIRPAMKALTQP-- 504

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                        P         +   D I  D   +   +   +      +   +    
Sbjct: 505 ------------APVAEPLENNDVAQLDAIENDQPERPQLTGPSSANEAQQASPGELRLE 552

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
               +   N    A I++ W   E
Sbjct: 553 DARKLTRDNPAAVANIVKAWMNGE 576


>gi|254294565|ref|YP_003060588.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814]
 gi|254043096|gb|ACT59891.1| flagellar M-ring protein FliF [Hirschia baltica ATCC 49814]
          Length = 568

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 145/563 (25%), Positives = 262/563 (46%), Gaps = 15/563 (2%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + + +   K  T+ G+ RI+  A +++  +   +             LY  L++++   I
Sbjct: 1   MAETVSIIKKITNGGQMRIIA-ALMVVALVGAGLGFIMLRGGADEALLYSGLDLTESAEI 59

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           S  L +ANI + I  +G+SI V    V  AR+ L+ +GLP+  +  GYE+FDK  + G T
Sbjct: 60  SGRLDQANISYTIRGDGASIFVNRDQVLDARMMLSEEGLPTRGA-MGYEIFDKSEALGTT 118

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINP 182
           SF+Q I RVRALEGE+ARTI S+  I  +RVH+V+P+   F +    P+ASV+I  A   
Sbjct: 119 SFVQNINRVRALEGELARTISSLDNIRGSRVHLVLPERRLFERGTQTPSASVVISVAGRG 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQH 239
            +     AIR+L+A +VPNL++  +T+LD  G+LL A   N       G +      I+ 
Sbjct: 179 MLPSQVRAIRNLIAGSVPNLEVNRITLLDDKGRLLAAGAENSENGFSGGSADERQTGIED 238

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +I   +   + +  G    R  V A+++ +       ++DP+ +V RS   ++D+ R  +
Sbjct: 239 QIRNKVLSVVESVTGPGAARVQVAADIDFNRITQSSEIFDPEGRVIRSSTTTEDSSRESS 298

Query: 300 SQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           ++P  AVT E N+P   +      P S   T+  +E +NYEI+  +     +  ++ ++S
Sbjct: 299 TEPAGAVTAENNIPAGTAADGPADPTSQAETNHLQETTNYEISKTTKTEITEGGRIRKIS 358

Query: 359 IAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +AV ++  R+       +    +    +A I  +V +A G +  RGD + + ++ F+  +
Sbjct: 359 VAVALDDVRVPGADETEATFAPRTPEEIANIKTLVRSAVGYDEARGDIVEVVNVSFMRPE 418

Query: 418 -LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              N        + +       +       VG +L+    L  L +      A+ G+   
Sbjct: 419 SSVNLAIEDPGMLGLTKNDIMRISELAALFVGAVLLIIFVLRPLVKGLMSPSAESGDSFY 478

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ------SRINSYVSKQSDLR 530
                 P  S      +  ++N+ L  S                  +RI+  V+  S  +
Sbjct: 479 VGEAKLPGGSGNAAQKVTLSENLVLPGSGDGGNGQITEDDQFGLDVARISGKVNASSVKK 538

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  ++E + +   +I+R W   +
Sbjct: 539 ISEVVESHPDESIQIIRAWLSED 561


>gi|167579440|ref|ZP_02372314.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH]
          Length = 518

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 195/443 (44%), Gaps = 15/443 (3%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV++              AI  LV+++VP++   +VT++D  G LLT 
Sbjct: 196 SVFVRDREAPSASVLVDLYPGRVLDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQ 255

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ I+   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 256 TASATGLDASQLKYVQQIERNTQKRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYA 315

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDR--------KVPLPRSLEN 328
           P+   ++S   S+    S     S          N P             +   P +   
Sbjct: 316 PNGTPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVASNGQPAAPAATPV 375

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +D+K+  +NYE++            ++RLS+AVVVN    T+  GR   Q      LA++
Sbjct: 376 SDRKDSTTNYELDKTVRHVEQSMGTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQV 435

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G + +RGD++ + +  F       +        D++           V    
Sbjct: 436 QQLVKDAMGYDEKRGDSVNVVNSAFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAA 495

Query: 449 TLLVTFLGLHALRRLHNIDDAKK 471
             L       ALRR         
Sbjct: 496 AALYFMFVRPALRRAFPPPAEPA 518


>gi|74317618|ref|YP_315358.1| flagellar MS-ring protein [Thiobacillus denitrificans ATCC 25259]
 gi|74057113|gb|AAZ97553.1| flagellar M-ring protein FliF [Thiobacillus denitrificans ATCC
           25259]
          Length = 548

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/560 (21%), Positives = 217/560 (38%), Gaps = 46/560 (8%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
            T     R ++L   +   + +  A   +   P Y  L+      D   I   L + N+ 
Sbjct: 16  FTRTAGGRKILLMLGVAASVAVMAAVWMWGQQPEYRVLFSNFSDRDGGAIVAELEKMNVP 75

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++ ++ G ++ VP+  V  AR+ LA+QGLP    N G+EL  +    G + F++++   R
Sbjct: 76  YKYAEGGGAVLVPADRVHDARLKLASQGLPK-GGNVGFELM-ENQRLGASQFVEQVNFQR 133

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAI 191
           A+EGE+AR+I+S+S + AARVH+ +P    F     +PTASV++          +   AI
Sbjct: 134 AMEGELARSIESVSAVQAARVHLALPKDSIFVSEQKQPTASVLLNLHPGRALDPQQVSAI 193

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEMNINKA 248
            HLVA++VP L   +VTV+D  G LL+          +    +  VQ +Q ++   I   
Sbjct: 194 VHLVASSVPELATKNVTVVDQNGNLLSDAGKAPRVNGMDPSQIKYVQELQQDVVQRIESI 253

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS--ETSQPESAV 306
           +   +G  N R+   A+++    +     Y P+   +     S+    S   ++ P    
Sbjct: 254 ITPIVGPGNVRAEATADVDFSRSEQAVESYKPNQTPDAMAIRSQQTSESLNGSANPAGVP 313

Query: 307 TVEQNMPHVSDRKVPL------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               N P                           + +K+   NYE++            L
Sbjct: 314 GALINQPPAPATAPITVPGQATPAPAAAAAQPATSTRKDATVNYEVDKTIQYVQQAGGGL 373

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS+ VVVN  +  +  G+ A +   ++   +I  +V  A G N  RGDT+ + +  F 
Sbjct: 374 KRLSVGVVVNYKKTVDKAGKVAMKPLSEAEKTQITNLVKEAMGYNQARGDTVNVVNSPFA 433

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             Q  +            + +F    N   +L+  + +  L L   + L      ++   
Sbjct: 434 SAQEEDLPQPPFWKQPEYAEYFDIARNVGKYLLMGIALLLLYLKVAKPLLKKMSEQQALA 493

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                L    +++     L                               +++  R   +
Sbjct: 494 APNHPLHLEQLATDERAALPGQ-------------------------RNYQENLSRAQRL 528

Query: 535 IEINEERFAKILRKWARSEI 554
              +    A I++ W  +  
Sbjct: 529 ANEDPRVVANIVKTWVANND 548


>gi|254496581|ref|ZP_05109449.1| flagellar MS-ring protein [Legionella drancourtii LLAP12]
 gi|254354205|gb|EET12872.1| flagellar MS-ring protein [Legionella drancourtii LLAP12]
          Length = 547

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 117/573 (20%), Positives = 233/573 (40%), Gaps = 52/573 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + L   +   + + +A   +   P+Y  LY ++   D 
Sbjct: 1   MALADNASMVAAKFASLSIPRQIGLLIGLAASVAVGLAVVLWSRDPNYVPLYTQMNTRDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +  AL    I+F+I +N S+I +PS+ +   R+ LAA+GLP     +  ELF   N+F
Sbjct: 61  AEVVSALERNGIEFKIDNNNSTILIPSANLQSTRLKLAAEGLPRD-PVASEELFSSGNAF 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             + FM+     +ALE E+ARTI   + I AARVH+ +P   +F +   +P+ASV I   
Sbjct: 120 NSSQFMENARYKQALEAELARTISKFNDIKAARVHLAIPRESAFVRDIHQPSASVFIDVY 179

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQA 236
           +    K  +  AI +LVA+++PNL    VTV+D  G+LL     +         L   Q 
Sbjct: 180 SGLELKKHTVSAIVNLVASSIPNLSASRVTVVDQDGQLLNEGSGQTLFTDTERFLDYRQN 239

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +    I   L   LG    R+ V A+++  + +  + +++P+    RS +  ++   
Sbjct: 240 LEQQYAQKIQDILTPLLGYGRVRAKVSADIDFTSYEQTQEMFNPELPSLRSEQTMQEKHN 299

Query: 297 SETSQPESAVTVEQNMPHVSDRKVP------------------LPRSLENTDKKEEQSNY 338
           + +           N P  +                          +  +  + +   N+
Sbjct: 300 AAS-DAIGVPGTLSNTPQPNPSLNNKNPAAPNAQQQQQPAQSSSDANQSSDTRTQSTKNF 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR-SADQGKIDSYLAEINKIVSAATG 397
           E++     T +    ++RLS+AV+V+   + +   +    +      + +I  +V+ A G
Sbjct: 359 ELDKTISHTKNQPGTIKRLSVAVLVDNPAIMDTKTKTMIKKALTAKEIDQIKLLVADAIG 418

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           +NS+RGD++ + + DF++         +  +       F +++  +   +  L + F  L
Sbjct: 419 LNSQRGDSLNVINSDFVKPDPIAPIPEERFWQ---KDIFWSIVKQVAGALFVLAMIFGVL 475

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
             + +    +                          +       D+             +
Sbjct: 476 RPMLKTLASNK------------------------GVGEGAYLEDTDEPQGDLTYDGTIA 511

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
             ++   +     L  +++   +R A++++ W 
Sbjct: 512 IKDANDYESQLNLLRQVVDKEPKRVAQVVKTWV 544


>gi|253990094|ref|YP_003041450.1| flagellar MS-ring protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781544|emb|CAQ84707.1| flagellar basal-body m-ring protein [Photorhabdus asymbiotica]
          Length = 567

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 130/584 (22%), Positives = 236/584 (40%), Gaps = 56/584 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q   F      +     + L       I + +A   ++ SP Y  LY  L   D  
Sbjct: 7   DIENQTNGFSTIINRIKADPKVPLLVAGSAAIAIVIALFLWLRSPDYRVLYSNLSDKDGG 66

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ NI +R ++NGS+I +P+  V + R+ LA QGLP   + +G+EL DK   FG
Sbjct: 67  EIVTQLTQLNIPYRFAENGSAIMIPAGQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
           ++ F +++   RALEGE++RTI+S+  +  ARVH+ +P    F +    P+ASV +    
Sbjct: 125 ISQFSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238
                     AI H+V+++V  L   +VT++D  G+LLT  +   R++    L  +Q ++
Sbjct: 185 GRTLDEGQINAIVHMVSSSVAGLPPSNVTIVDQAGRLLTQADATGRDLNTSQLKYIQEVE 244

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295
           +  +  I   L   +G  N  + V A+++   ++     Y P+    ++   SK   +++
Sbjct: 245 NRFQQRIEAILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESE 304

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK----------------------- 332
           +S             N P           + + ++K                        
Sbjct: 305 QSGGPLVGGIPGALSNQPSPPPSAPIEKPNTKESNKSDKSDKKTSSSGNSNERMVNNNRN 364

Query: 333 ---EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
              +E +NYE++            +ERLS+AVVVN   +    G    Q      LA+I 
Sbjct: 365 NRRDETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLAKIE 423

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +   A G +  RGD++ + +  F E++             +L + F             
Sbjct: 424 ALTREAMGFSKERGDSLNVVNTPFTESKENIEVIPVWQNPILLEKAFDFG---------- 473

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
                     L  +       +  V  +         +A+             S+  D  
Sbjct: 474 --------RYLLLILVAWLLWRKMVVPQLAKKRAAEKAALEAQKAQKKQATESSAEMDER 525

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +  R  + R+++ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 526 TRQRLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566


>gi|37525871|ref|NP_929215.1| flagellar MS-ring protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785300|emb|CAE14241.1| flagellar basal-body M-ring protein [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 567

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 127/584 (21%), Positives = 240/584 (41%), Gaps = 56/584 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + +Q   F      +     + L       + + +A   ++ SP Y  LY  L   D  
Sbjct: 7   DVENQTKGFSAIINQIKADPKVPLLVAGSAAVAIVIALFLWLRSPDYRVLYSNLSDKDGG 66

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ NI +R ++NG++I +P+  V + R+ LA QGLP   + +G+EL DK   FG
Sbjct: 67  DIVTQLTQLNIPYRFAENGAAIMIPAEQVHETRLRLAQQGLPKGGA-AGFELLDKE-KFG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
           ++ F +++   RALEGE++RTI+S+  +  ARVH+ +P    F +    P+ASV +    
Sbjct: 125 ISQFSEQVNYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTVGLLQ 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238
                     AI H+V+++V  L  G+VT++D TG+LLT  +   R++    L  +Q ++
Sbjct: 185 GRTLDEGQINAIVHMVSSSVAGLPPGNVTIVDQTGRLLTQADATGRDLNTSQLKYIQEVE 244

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQ 295
           +  +  I   L   +G  N  + V A+++   ++     Y P+    ++   SK   +++
Sbjct: 245 NRFQHRIETILTPVVGRGNVHAQVTAQVDFSRREETAEEYKPNQPPNQAAVRSKQLSESE 304

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN--------------------------T 329
           +S   Q         N P           + +                            
Sbjct: 305 QSGGPQVGGIPGALSNQPSSPPSAPIDKPNTKENNKNDKSDKKASSAGNSNERTVNSNRN 364

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
           ++++E +NYE++            +ERLS+AVVVN   +    G    Q      L +I 
Sbjct: 365 NRRDETTNYEVDRTIRHVQQQAGGVERLSVAVVVNYVTVEGKNGPET-QALTPEQLTKIE 423

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +   A G +  RGD++ + +  F E++             +L + F             
Sbjct: 424 ALTREAMGFSKERGDSLNVVNTPFTESKENIEVIPVWQNPVLLEKAFDFG---------- 473

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
                     L  +       +  V  +         +A+    +    +   S+  D  
Sbjct: 474 --------RYLLLILVAWLLWRKMVVPQLAKKRAAEKAALDAQKVQKRQVTESSAEMDEK 525

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +  +  + R+++ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 526 TRQKLTRQRVSAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 566


>gi|167900849|ref|ZP_02488054.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177]
          Length = 500

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 202/463 (43%), Gaps = 15/463 (3%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +     L       + I   +A   +  +P Y  LY  L   D   I  AL +AN+
Sbjct: 27  GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 86

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++ F +++   
Sbjct: 87  PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 144

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190
           RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++              A
Sbjct: 145 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 204

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           +  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   +  I+  LA
Sbjct: 205 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 264

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307
              G  N RS V A+++    +     Y P+   ++S   S+    S     S       
Sbjct: 265 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 324

Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              N P             +   P +   +D+K+  +NYE++            ++RLS+
Sbjct: 325 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 384

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +  F      
Sbjct: 385 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 444

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            +        D++           V      L       ALRR
Sbjct: 445 FANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRR 487


>gi|170743231|ref|YP_001771886.1| flagellar MS-ring protein [Methylobacterium sp. 4-46]
 gi|168197505|gb|ACA19452.1| flagellar M-ring protein FliF [Methylobacterium sp. 4-46]
          Length = 539

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/549 (22%), Positives = 234/549 (42%), Gaps = 14/549 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +          G  R+  + +V LV +  F      V+ P    LY  L + D   +   
Sbjct: 1   MQPVLDLMAKFGPARLAAMGAVTLVLVGFFAFVILRVSRPELGVLYADLSLQDAGAVIRD 60

Query: 67  LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L    I +    + G +I  P + + + R+ LA +GLPS+    GYELFDK ++F  T+F
Sbjct: 61  LEARGIRYETRGDLGQTILAPRADLPRLRMDLAGKGLPSAGG-VGYELFDKGDAFSTTTF 119

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +  +RA EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++       
Sbjct: 120 VQNVNHLRAQEGELARSIRAIGRVQAARVHLVIPEKRLFNRDRELPSAAIVLKLAGDLDP 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEM 243
               A+RHLVA++V  L    ++++D  G+LL       +   +        +++  +  
Sbjct: 180 GQVRAVRHLVASSVEGLKPERISIVDERGRLLADGAGRDDAQAVLGLDERQASLEQRLRA 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   +A  +G    R  V AEL+    + R   +DP+S+V RS +   +   S+     
Sbjct: 240 QVEGIVAGIVGAGRARVQVAAELDPSRIESRSESFDPESRVVRSSQTRSETSASQGPGET 299

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N    +        + E ++K EE +NYEI+  +    ++  +++RLS+AVV+
Sbjct: 300 GV--SVGNELPGARETAQANGTRETSNKNEETTNYEISRVTRTEVNEGGRIKRLSVAVVI 357

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+     +    L  I  +V  A G +  RGD + + ++ F +  +     
Sbjct: 358 DGSYQPGPDGKPVYAPRSQEELDRITALVRTAVGYDKGRGDQVEVANLRFADTAVPAELP 417

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            +     +L      V+  +   V  LL   + L  +R L       +            
Sbjct: 418 EEGLLASLLKPTKEEVLRLVELAVLALLTLVVVLAVMRPLLRRVLPAEAPPEPALAAVAV 477

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             ++       P        +  +  +      ++IN  +  ++  R+  ++  N    A
Sbjct: 478 LPAAGAEGEGAP--------ALPESPARQLVEFAKINGKIQAETIARVAEIVRQNPVETA 529

Query: 544 KILRKWARS 552
           ++LR W + 
Sbjct: 530 EVLRGWIQD 538


>gi|254559216|ref|YP_003066311.1| flagellar M-ring protein FliF [Methylobacterium extorquens DM4]
 gi|254266494|emb|CAX22258.1| Flagellar M-ring protein FliF [Methylobacterium extorquens DM4]
          Length = 559

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 190/560 (33%), Positives = 311/560 (55%), Gaps = 7/560 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQEMLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGAAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRRDQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G +L A +       GK  ++ +++  
Sbjct: 180 PADDTSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +++PD +VERS+R  ++++ ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEISVATQLNTDKTSTNETIFNPDQRVERSVRSVRESENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K++ T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTVQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RLT + G   D+  +D  +AEI ++V +A G +  RGDTI + ++ F+ +   
Sbjct: 360 AVLVNRSRLTALAG-PDDKASLDKQIAEIEELVGSAAGFSKERGDTIKVAAVGFVNDGQP 418

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKS 478
                 +S  D++ +   T+INA   LV   L+ + GL   LR +    +  + EV   +
Sbjct: 419 MEPVPPLSLTDVMMKQSGTLINAATILVVAGLLIWFGLRPALRAILATPETAQSEVAALA 478

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR---NLQSRINSYVSKQSDLRLLHMI 535
            L   P+ +A  T  +     AL  S++     +     L   +   +++    RL  +I
Sbjct: 479 GLEGAPVLAADGTMALAAPGAALPGSSEAAKLPAPGVAGLLEELEDKMARSPQKRLEQLI 538

Query: 536 EINEERFAKILRKWARSEIE 555
           +I+EE+ A +L++W   E  
Sbjct: 539 DIDEEQVAAVLKRWLMREEA 558


>gi|71906412|ref|YP_283999.1| flagellar MS-ring protein [Dechloromonas aromatica RCB]
 gi|71846033|gb|AAZ45529.1| Flagellar FliF M-ring protein [Dechloromonas aromatica RCB]
          Length = 584

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 126/584 (21%), Positives = 231/584 (39%), Gaps = 58/584 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + + +  ++   LG  + ++    I   I + + A  +   P +  L+  L   D   I+
Sbjct: 16  NPVDRLREAFNRLGSQQKIVFMVAIAALIAIIVGAILWSRQPDWKVLFSNLTEKDGGSIA 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L + NI  R S++G ++ VPS  V + R+ LA+QGLP      G+EL  +   FG++ 
Sbjct: 76  AILEQQNIPHRYSNSG-ALLVPSDRVHEVRLKLASQGLPRGGM-VGFELM-ENQKFGVSQ 132

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   R LEGE+ARTIQSI  + +ARVH+ +P    F +   +PTASVM+       
Sbjct: 133 FAEQVNYQRGLEGELARTIQSIGSVQSARVHLAIPKPSVFVREEQKPTASVMLNLYPGRT 192

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239
                   I HLV+++VP L   +VTVLD +G LL+  +    E  +    +  V  +++
Sbjct: 193 LDGGQIAGITHLVSSSVPQLPASNVTVLDQSGALLSQLKSKLTEAGLDPTQIKYVHDVEN 252

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I   I++ L+  LG DNF+  V A+++    +     Y P++  E +   S+    +  
Sbjct: 253 SIIKRIDEILSPLLGADNFKVQVAADIDFSQTEQTAESYRPNNTPESTSIRSQQNNETAN 312

Query: 300 --SQPESAVTVEQNMPHVSDRKVPLPRSLEN----------------------------- 328
                        N P V         +                                
Sbjct: 313 VNQAAGGVPGALTNQPPVPATAPLTQPATGTTPGQPAKPGEPQGKIDAAGVTAPLNAAGQ 372

Query: 329 --TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +  K    NYE++     T      + RLS AVVVN  +  +  G+   +   D+ + 
Sbjct: 373 PISTSKNATINYELDKTIRHTRQGMGNIRRLSAAVVVNHRKDVDKTGKPLTKAIPDAEMK 432

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +IN++V  A G    RGDT+++ +  F       +       +     + + + + L +L
Sbjct: 433 QINELVREAMGFTKERGDTLSVANAPFTAIDKSENELP----IWKDPENVSYIKDILKYL 488

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           +   ++ FL +  ++         + E    +     P            +         
Sbjct: 489 LIAAIIAFLYIKLIQPSLKTMFPARHEGEKHAGDGTGPGGIFGGITGSAEEA-------- 540

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                  +  +++          +     E + +  A I++ W 
Sbjct: 541 -----GEDGSTQVTIDNYAIKIQKAREFAEKDSKAVANIIKDWM 579


>gi|188583761|ref|YP_001927206.1| flagellar MS-ring protein [Methylobacterium populi BJ001]
 gi|179347259|gb|ACB82671.1| flagellar M-ring protein FliF [Methylobacterium populi BJ001]
          Length = 538

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 142/552 (25%), Positives = 253/552 (45%), Gaps = 21/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +       T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   
Sbjct: 1   MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSMQDSSAVIRE 60

Query: 67  LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L    I +      G ++  P + + K R+  A +GLP+     GYE+FDK ++F  TSF
Sbjct: 61  LDARGIAYETKGELGQTVLAPRADLAKLRMDFAGKGLPAQGG-IGYEIFDKGDAFSSTSF 119

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +  +RA+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +     
Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDP 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
               AIRHL A+AV  L    V+++D  G+LL       E    G        I+  +  
Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEAEGAGALEERQAGIERRMRA 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + +A  +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E
Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             V+V   +P  +  + P P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V
Sbjct: 298 GQVSVGNELPGANQNQPP-PQQKDSSQKNEEVTNYEISRVTKVETLEGGRLKRLSVAVLV 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G++A Q + D+ +A I  +V  A G +  RGD + + ++ F E        
Sbjct: 357 DGVYAPGADGKAAYQPRSDAEIARIAALVRTAVGYDKARGDQVEVVNLRFAETPAAAEFA 416

Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                 SF+         ++   V  + TL+V    +  L R     DA    + G ++ 
Sbjct: 417 EPGLIQSFLSPSKEDVMRLVELAVLSLLTLIVLMAVVRPLLRRVLESDAPVAALAGPALA 476

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                    T   +               ++     ++IN  +  ++  R++ M+  +  
Sbjct: 477 LAGAGGEGPTEIAVRE-----------NSTNKFLESAKINGQIQAETVERVVDMVRASPT 525

Query: 541 RFAKILRKWARS 552
              ++LR W   
Sbjct: 526 ETVEVLRNWIHD 537


>gi|313673744|ref|YP_004051855.1| flagellar m-ring protein flif [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940500|gb|ADR19692.1| flagellar M-ring protein FliF [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 554

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 130/563 (23%), Positives = 239/563 (42%), Gaps = 20/563 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + D   QF        + + + + S  +  ++  +   ++ N P Y  L+  L   D 
Sbjct: 1   MNLKDVGEQFKTVFQKFSKVQQIAIISAAVAILLSIIVLVYWANKPVYKILFANLSQEDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L    I + + D+G +I VP+  V + RI LA +G+P      G+ELFDK + F
Sbjct: 61  AEVVAKLKAKKIPYNLKDSGKTIEVPAKDVYETRIELAKEGIPKGGG-VGFELFDKTS-F 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179
           G+T F Q +   RAL+GE++RTI ++  +  ARVH+ +P    F        A+V+++  
Sbjct: 119 GITEFAQNVNYQRALQGELSRTISTLEEVEEARVHLTLPKDKLFITEDGEAKAAVVLKLK 178

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIV 234
                     +AI  LV  AV  L + +V ++D+ G LL+ +  E N+        L   
Sbjct: 179 KGETLNRDKVKAIASLVVGAVKGLKIQNVQIVDTQGNLLSESLNEENLPYVKTQTQLEYQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  I   IN  LA  LG +N  + V AE++ D ++I +  +D +  V RS +  +  
Sbjct: 239 KKVEKIISSKINSLLATTLGENNAVAQVTAEIDFDKKEINKEEFDQN-PVLRSSQTIEIE 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            ++  + P+    VE N+   +   +          K EE  N+EI             +
Sbjct: 298 SKNTPNTPQGQPGVEPNLAEPN---IQQNGVNSTYTKNEETQNFEIGKTVTKEEKSIGSI 354

Query: 355 ERLSIAVVVNKGRLTEVLGR---SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +RL+IAVVVN        G+   +    +    L +I  +V+ A G + +RGD I +T++
Sbjct: 355 KRLTIAVVVNDKAEIVKEGKKEVTKYVPRTKEELDKIKGLVAKAAGFDEKRGDQIEVTNV 414

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F  +Q+  S  ++   M+ L      +   ++ LV  LL  FL +  + +        K
Sbjct: 415 SFDTSQMSESKLLEKEKMNEL---IIQISKYVMVLVMFLLFYFLVIRPIMKKLGDIKETK 471

Query: 472 GEVGGKSILSP--PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                     P             +       +   +        +   + +  +K    
Sbjct: 472 SGELAAVGDIPLKGANVDLQLDDSVKFPKTLEELEREIESELDEKVSVDVGTVKTKVMVK 531

Query: 530 RLLHMIEINEERFAKILRKWARS 552
           ++   ++ + E  A +++ W + 
Sbjct: 532 KIEEAVKEDPEMIANLIKTWLKE 554


>gi|94500269|ref|ZP_01306802.1| flagellar M-ring protein [Oceanobacter sp. RED65]
 gi|94427568|gb|EAT12545.1| flagellar M-ring protein [Oceanobacter sp. RED65]
          Length = 577

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 115/557 (20%), Positives = 223/557 (40%), Gaps = 31/557 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         L   R + L       + L +    +     Y  L   LE  +   I   
Sbjct: 39  INPIMMGFNKLTIVRQVALLIGFAGILALGIGVIIWSQEVTYRPLISNLEDYNAKEILQT 98

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  ID+RI+     ++VP + +  AR+ LA   +    +  G EL D+    G + F+
Sbjct: 99  LDEKGIDYRINPTTGIVTVPEAEIHDARLALAPI-VAEIDTTVGLELLDQEQGLGTSQFI 157

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184
           +     R LEGE+ARTI S+  +  ARVH+ +P    F +    P ASV +         
Sbjct: 158 ESARYRRGLEGELARTIASLQSVRNARVHLALPKQSVFVRDDREPRASVFLEIYGGKGLK 217

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIE 242
            + AEAI +L+A+++P L + +VT++D  G LL+    + E  +  K     + +++ + 
Sbjct: 218 REQAEAIINLIASSIPELPVENVTLVDQKGNLLSKEGQDEEDLLATKQFDYTRKVENSLH 277

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + L   LG DNF++ V A+++    +  + +++PD    RS +     Q       
Sbjct: 278 QRVQRILEPVLGSDNFQAEVSADVDFTMVEQTQELFNPDLIALRSEQTL--NQEKVEKPE 335

Query: 303 ESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                   N P  +            P +     K E   NYE++     T H   +L R
Sbjct: 336 GGIPGALSNQPPGAAEVPEEVDENGNPVAQPIERKSEATRNYEVDRTLSHTQHQVGRLRR 395

Query: 357 LSIAVVV-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           L+++V V ++ ++    G        ++ L  +  +V  + G N+ RGD++++ +  FL 
Sbjct: 396 LTVSVAVNDREKVNPETGVVESVPWTEAELKRLELLVKDSVGFNAARGDSVSVVNSLFLG 455

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +                 F  ++  ++  +  L++ F  +  + +    +   +G++ 
Sbjct: 456 GAVELGEPDFWK-----QPWFWEIVKQVLAGLFLLILIFGVIRPIVK----NLIDRGKMD 506

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             + +            L  +D + L  +++ +   +     R            L  +I
Sbjct: 507 EVAEIEGELDELGDGDDLFGDDKVTLAGADEFLLPGASEGFER--------QLDALKGLI 558

Query: 536 EINEERFAKILRKWARS 552
             +  R A+  +KW   
Sbjct: 559 AEDPARVAQSFKKWVND 575


>gi|238788332|ref|ZP_04632126.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641]
 gi|238723578|gb|EEQ15224.1| Flagellar M-ring protein [Yersinia frederiksenii ATCC 33641]
          Length = 569

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 124/583 (21%), Positives = 230/583 (39%), Gaps = 58/583 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTTTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +D+G ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADHGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F +++   RALEGE+ARTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L   +VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIETILAPMVGSGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSSSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSD----------------------------RKVPLPRSLENTD 330
                       N P  +                                    +  +  
Sbjct: 308 GSNVGGVPGALSNQPSATPVAPIEVPQPAAAPGATGAAANNANAANSPATTRSTATSSNS 367

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           + ++ +N+E++     T      ++RLS+AVVVN G                  LA++  
Sbjct: 368 RHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPIALTKDQLAQVES 423

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +   A G ++ RGDT+ + +  F      +   +              ++NA  +L+  L
Sbjct: 424 LTREAMGFSTDRGDTLNVVNTPFNATDNASGNALPFWQQPSFFDQ---LLNAGRYLLILL 480

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           +   L    +R L              + +     + A  T     + +AL   NQ   S
Sbjct: 481 VAWILWRKLVRPLIAKKQIADKAAASVNNIV--QTAQATETAKQSKEELALRKKNQQRVS 538

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                         +    R+  + + +    A ++R+W  ++
Sbjct: 539 A-------------EVQAQRIRELADKDPRVVALVIRQWMSND 568


>gi|332161342|ref|YP_004297919.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665572|gb|ADZ42216.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863306|emb|CBX73430.1| flagellar M-ring protein [Yersinia enterocolitica W22703]
          Length = 559

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 117/538 (21%), Positives = 219/538 (40%), Gaps = 48/538 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV   ++           AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 TANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++     +    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV------------- 320
            Y P+    +    S+    SE               N P  +                 
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342

Query: 321 -----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                    +  +  + ++ +N+E++     T      ++RLS+AVVVN G         
Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAG 398

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                    LA++  +   A G ++ RGDT+ + +  F      +   +           
Sbjct: 399 KPIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPS---F 455

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
           F  ++N   +L+  L+   L    +R L              + +     ++        
Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPLIAKKQEADKAAASVNNIVQAAQTTETAKQTKE 515

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                         +  +  Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 516 E------------LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558


>gi|238920311|ref|YP_002933826.1| flagellar MS-ring protein [Edwardsiella ictaluri 93-146]
 gi|238869880|gb|ACR69591.1| flagellar M-ring protein FliF, putative [Edwardsiella ictaluri
           93-146]
          Length = 569

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 123/578 (21%), Positives = 224/578 (38%), Gaps = 56/578 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                    +     + L     V I + +    +  +P Y  LY  +   D   I   L
Sbjct: 18  NSIKAILERVRANPKIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQL 77

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++NG+++ VP+S V   R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 78  TQMNIPYRFANNGTTLMVPASDVYATRLKLAQQGLPRGGA-VGFELLDQE-KFGISQFSE 135

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185
           ++   RALEGE+ARTI+++  +V+ARV +  P    F +   +P+ASV +          
Sbjct: 136 QVNYQRALEGELARTIETLGPVVSARVLLAEPKPSLFVREQKQPSASVTLTLEPGRVLDD 195

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMN 244
               AI ++V+++V  L  G+VTV+D  G LL+  +   R++    L     ++  ++  
Sbjct: 196 GQINAIVYMVSSSVAGLPPGNVTVVDQYGHLLSQPDGTGRDLNAAQLKFTAEVESRLQRR 255

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP-- 302
           I   L   LG  N  + V A+L+  +++  +  Y P+    ++   SK   +S+ S    
Sbjct: 256 IETILQPMLGNGNVHAQVTAQLDFASREQTDEEYTPNQPPNQAAVRSKQINQSDQSGGLQ 315

Query: 303 -ESAVTVEQNMPHVSDR------------------------KVPLPRSLENTDKKEEQSN 337
                    N P  +                                S     +++E  N
Sbjct: 316 SGGVPGALSNEPAPAPTGHINGKPRSAQGGNGAANRSNAVSNNGRQSSRSENFRRDETIN 375

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           YE++     T      +ERLS+AVVVN         +  +       + +IN +V  A G
Sbjct: 376 YEVDRTIRHTKARAGTIERLSVAVVVNYAS----DTKGKEVALSQQKMDQINNLVREAMG 431

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            +  RGDT+++ +  F   +                     +     +L+  L+   L  
Sbjct: 432 FSQSRGDTLSVVNTPFNSVEDNGGELP----FWQKQAFIDLLTTLGRYLLVALVAWLLWR 487

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
             ++ L             ++   P                     S Q      +  + 
Sbjct: 488 KLVKPLLTKQQQAAAAAQQRADTPPLSAQP----------------SKQLSNEELQQRRK 531

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 ++    R+  M E +    A ++R+W  +E +
Sbjct: 532 LQQRSTAEAQTERVREMAEQDPRVVALVIRQWMSTEQQ 569


>gi|123442764|ref|YP_001006741.1| flagellar MS-ring protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089725|emb|CAL12578.1| flagellar M-ring protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 566

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 120/580 (20%), Positives = 229/580 (39%), Gaps = 55/580 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       + + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTTTLARLRANPKIPLLIAAAAAVAILVALMLWAKSPDYRVLYSNLNDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F +++   RALEGE+ARTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L   +VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIETILAPMVGSGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------PLPRSLENTDKKE 333
                       N P  +                                 +  +  + +
Sbjct: 308 GTNVGGVPGALSNQPSATPVAPIEIPQATPAAGAGAAANAANRPATAARQTATSSNSRHD 367

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
           + +N+E++     T      ++RLS+AVVVN G                  LA++  +  
Sbjct: 368 QTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPIALSKDQLAQVESLTR 423

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            A G ++ RGDT+ + +  F      +   +              ++N   +L+  L+  
Sbjct: 424 EAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPSFFDQ---LLNIGRYLLILLVAW 480

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            L    +R L              + +     ++                      +  +
Sbjct: 481 ILWRKLVRPLIAKKQEADKAAASVNNIVQAAQTTETAKQTKEE------------LALRK 528

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 529 KNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 565


>gi|238751780|ref|ZP_04613268.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
 gi|238710051|gb|EEQ02281.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
          Length = 564

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 119/543 (21%), Positives = 218/543 (40%), Gaps = 53/543 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +D+G ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLSDRDGGDIVTQLTQLNIPYRFADSGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV   ++           AI ++V+++V  L   +VTV+D TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVDQTGRLL 222

Query: 218 TANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++     +    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPL----------- 322
            Y P+    +    S     SE               N P  +                 
Sbjct: 283 EYKPNQSANQGAVRSAQISTSEQLGGSNVGGVPGALSNQPSATPVAPIEVTQPAGANNAN 342

Query: 323 ------------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
                         +  +  + ++ +NYE++     T      ++RLS+AVVVN G    
Sbjct: 343 AAARPAATPAARSTATSSNSRHDQTTNYEVDRTIRHTQQQAGMVQRLSVAVVVNYGS--- 399

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
                         LA++  +   A G ++ RGDT+ + +  F          +      
Sbjct: 400 -DKAGKPIALTKDQLAQVESLTREAMGFSTNRGDTLNVVNTPFNATDDTTGRALPFW--- 455

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
                F  ++NA  +L+  L+   L    +R +    +         + +      +   
Sbjct: 456 QQQSFFDQLLNAGRYLLILLVTWILWRKLVRPMLAKKNVADKAAASVNSMVQAAQVTE-- 513

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
           T     + +AL   NQ   S              +    R+  + + +    A ++R+W 
Sbjct: 514 TVKQSKEELALRKKNQQRISA-------------EVQAQRIRELADKDPRVVALVIRQWM 560

Query: 551 RSE 553
            ++
Sbjct: 561 SND 563


>gi|212709512|ref|ZP_03317640.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM
           30120]
 gi|212687850|gb|EEB47378.1| hypothetical protein PROVALCAL_00554 [Providencia alcalifaciens DSM
           30120]
          Length = 563

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 121/533 (22%), Positives = 227/533 (42%), Gaps = 34/533 (6%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA
Sbjct: 44  LLLWFRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPADKVHELRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GLP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +
Sbjct: 104 QSGLPK-GGNTGFELLDKE-KFGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    PTASV +              AI H+V+++V  L   +V ++D TG+L
Sbjct: 162 PKPTLFVREQKLPTASVTVGLLPGRMLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRL 221

Query: 217 LTANEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT N+  +       + + + ++  ++  I   L+  +G  N  + V A+++    +   
Sbjct: 222 LTNNDNSQQSANSAQIKMTKEMEAHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTS 281

Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMP-------------HVSDRK 319
             Y P+   + +   S+ +  S       P        N P             +   + 
Sbjct: 282 EEYKPNQTPDAAAVRSRQSSESLQNSNGGPSGVPGALSNQPVSAPSAPIDGNKENTDGKT 341

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
               R+     +++E +NYE++ K   T      ++RLS+AV+VN        G    + 
Sbjct: 342 AGNTRNGTLNTQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQSQEGEKG-PEMKP 400

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
                L +I+ +   A G +++RGD+I IT+  F ++         +S   ++S+     
Sbjct: 401 LPPEMLQQIDALTREAMGYSAQRGDSINITNSLFTDDTPVIEEPSLLSSPQVISQ----A 456

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           ++    ++  L+  F+    ++         +       +             +    + 
Sbjct: 457 LDYGKIVLIALIAWFMWRFGIKPQWVKYRKTQQAQIDAEMSIANASQVKAPFVVEEEISE 516

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +D   +   +  R           +    R+  M E + +  A ++R+W   
Sbjct: 517 DMDEKTRRRLTRQRVSA--------EIQSQRIREMAEKDPQVVAMVIRQWLGK 561


>gi|271500086|ref|YP_003333111.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586]
 gi|270343641|gb|ACZ76406.1| flagellar M-ring protein FliF [Dickeya dadantii Ech586]
          Length = 574

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 128/588 (21%), Positives = 232/588 (39%), Gaps = 67/588 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  L   D   I   L
Sbjct: 13  KSFGEILNRLRANPKIPLLIAAAATIAIVVALSLWARGPDYRALYTNLNERDGGSIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            + NI +R ++NG++I +P+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 73  GKMNIPYRFAENGAAILIPADKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
           +I   RALEGE+ART++++  I +ARVH+ +P    F +    P+A+V +          
Sbjct: 131 QINYQRALEGELARTMETLGPIQSARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               AI +LV+++V  L    VTV+D TGKLLT N+     +    L     ++   +  
Sbjct: 191 SQINAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDGSGRDLNAAQLKYANEVESNYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           I   L   +G  N  + V A+++   ++  +  Y P+    ++   S+   +S+      
Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFANREQTDEQYQPNQTPNQAAVRSQQTSQSDQRGGPN 310

Query: 299 --------TSQPESAVTVEQNMPH------------------------VSDRKVPLPRSL 326
                   ++ P  A T   + P                          +        + 
Sbjct: 311 VGGVPGALSNTPTPAPTAPISTPPTNNANNANNANNTNNANNANAAGNNTQTSASNSANQ 370

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
               ++++  NYE++     T      ++RLS+AVVVN        G+ A     D  L 
Sbjct: 371 TFNSRRDQTINYEVDRTIRHTKQSTGSVQRLSVAVVVNY--TQGEDGKPA--ALSDEQLK 426

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I  +V  + G +S RGD++ + +  F                      F  +I A  +L
Sbjct: 427 KIEALVRESMGFSSDRGDSVNVVNTPFTVTDTSAGELP----FWKKQAFFDLLIEAGRWL 482

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           +  ++   +    +R         +      + L       +VT   M  +         
Sbjct: 483 LVLIVGWIMYRKLVRPQLQRRSQIQQAAEAAAALRGQDSDVSVTISAMEEE--------- 533

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                 +  + R ++ +  Q   R+  + E +    A ++R W  +E+
Sbjct: 534 ----IQKKSEQRAHAEMHSQ---RIRELAENDPRVVALVIRHWMSNEL 574


>gi|167588531|ref|ZP_02380919.1| flagellar MS-ring protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  353 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 190/441 (43%), Gaps = 15/441 (3%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LA
Sbjct: 50  LVLWTRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLA 109

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A GLP   S  G+EL D    FG++ F ++I   RALEGE+ RTI+S++ + AARVH+ +
Sbjct: 110 ALGLPKGGS-VGFELMDN-QKFGISQFAEQINYQRALEGELQRTIESVNAVKAARVHLAI 167

Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV +              AI  +V++ VP++   +VT++D  G L
Sbjct: 168 PKPSVFVRDKEAPSASVFVDLYPGRVLDEGQVLAITRMVSSGVPDMPAKNVTIVDQDGNL 227

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           LT       +    L  VQ ++   +  I+  LA   G  N RS V A+++    +    
Sbjct: 228 LTQPASATGLDASQLKYVQQVERNTQKRIDAILAPIFGTGNARSQVSADIDFSRLEQTSE 287

Query: 277 VYDPDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSL 326
            Y P+   +++   S+    +                N P                P++ 
Sbjct: 288 SYGPNGTPQQTAIRSQQTSTATELAQGGASGVPGALSNTPPQPASAPIVAGNGQNGPQAT 347

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +D+K+  +NYE++            ++RLS+AVVVN   + +  G    Q    + LA
Sbjct: 348 PVSDRKDSTTNYELDKTIRHVEQPMGSVKRLSVAVVVNYQPVADSKGHVTMQPLPPAKLA 407

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           ++ ++V  A G +++RGD++ + +  F       +          +          L   
Sbjct: 408 QVEQLVKDAMGYDAKRGDSVNVVNSTFTAAGDPYANLP-WYRQPAIIDMAKEAAKWLGIA 466

Query: 447 VGTLLVTFLGLHALRRLHNID 467
                + F  +    R     
Sbjct: 467 AVAAALYFAVVRPAMRRAFPP 487


>gi|331005205|ref|ZP_08328599.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
 gi|330420987|gb|EGG95259.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
          Length = 565

 Score =  353 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 117/558 (20%), Positives = 234/558 (41%), Gaps = 25/558 (4%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
               +   +L   R + L   +   + +  A   +     Y  LY  L   D + I   L
Sbjct: 21  SNLVEGFNNLNLLRQVGLMVALAASVAIGFAVVLWTQEEDYRPLYSNLNQLDSSEIISIL 80

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I F++     ++ V +  +  AR+ LA  GLP++ S  G+EL DK    G + FM+
Sbjct: 81  EQNAIQFKVDTKTGALLVSAQDIHTARLKLAEVGLPNTGS-VGFELLDKEQPLGSSQFME 139

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VY 185
                R LEGE+ARTI S++ + AARVH+ +P    F +    P ASV +          
Sbjct: 140 ATRYRRGLEGELARTITSLNAVRAARVHLAIPKRSVFVRDAREPRASVFVELYPGRAITP 199

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEM 243
           +   A+ +LVA+++  L + +VT++D  G LL+  E +  +    + L   + ++ +I  
Sbjct: 200 QQVVAMSNLVASSISELSLKNVTIVDQKGNLLSKGEEDPQLVQAAQELEYTREVEKKIIS 259

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I   L   +G D FR+ V A+++ +  +  E +++PD    RS +   + +        
Sbjct: 260 RIQALLDPIVGGDRFRAEVAAQVDFNQVEQAEEMFNPDLPAIRSEQTVDEQRVGGGVGG- 318

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTD-------KKEEQSNYEINTKSIATTHDNYKLER 356
                  N P  +     +    +N +       + +   N+E++     T H   K+ R
Sbjct: 319 -IPGALTNQPPANADAPEIAAGGDNNNAQQSSNSRSQSTRNFELDRTMSYTKHQVGKVRR 377

Query: 357 LSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           LS+AVVV+   +T+   G    +   D+ +  ++ +V  A G +  RGD++ I +  FL 
Sbjct: 378 LSVAVVVDDRLVTDPLTGEQKYETWSDNEIERLSILVRDAVGFSPARGDSVNIINTPFLN 437

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
           +          +F +     F  +I  ++ L+  L++    L  + +      ++  +  
Sbjct: 438 DGFNAEEIQAPNFWEE--EWFTALIKPIIGLLIILIMVLGLLRPILKTLARTGSETRDDE 495

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               L+    +   +   + ++ + L  +                    +Q    +  ++
Sbjct: 496 EAQQLAALEAAGLGSFDELSDEAVTLTGTTALSLPGPEES--------YEQMLNSVKGLV 547

Query: 536 EINEERFAKILRKWARSE 553
             +  R ++++++W   E
Sbjct: 548 ADDPGRVSQVIKRWINEE 565


>gi|238764898|ref|ZP_04625838.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
 gi|238696917|gb|EEP89694.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
          Length = 572

 Score =  353 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 128/586 (21%), Positives = 230/586 (39%), Gaps = 61/586 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTTTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F +++   RALEGE+ARTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQVNYQRALEGELARTISTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L    VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPASVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIETILAPMVGSGNIHAQVTAQVDFSSREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------------PLPRSLE 327
                       N P V+                                       +  
Sbjct: 308 GTNVGGVPGALSNQPPVTPVAPIEVPPATPAAGAGAPANTANAANRPAATTTAARQTATS 367

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
           +  + ++ +N+E++     T      ++RLS+AVVVN G                  LA+
Sbjct: 368 SNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGT----DKAGKPIALSKEQLAQ 423

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           +  +   A G ++ RGDT+ + +  F         ++           F  +IN   +L+
Sbjct: 424 VESLTREAMGFSTDRGDTLNVVNTPFSATGDDTGSSLPFW---QQQSFFDQLINIGRYLL 480

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             L+   L    +R L              + L     + A  T     + +AL   NQ 
Sbjct: 481 ILLVAWILWRKLVRPLMEKKQVADKATASVNTLV--QTAQASETAKQTKEELALRKKNQQ 538

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             S              +    R+  + + +    A ++R+W  ++
Sbjct: 539 RVSA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 571


>gi|187478210|ref|YP_786234.1| flagellar MS-ring protein [Bordetella avium 197N]
 gi|115422796|emb|CAJ49324.1| flagellar M-ring protein [Bordetella avium 197N]
          Length = 544

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 113/536 (21%), Positives = 204/536 (38%), Gaps = 61/536 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +   P Y  L+  L+  D   I  AL++ N+ +R SDNG +I VP + V   R+ LA QG
Sbjct: 46  WSREPDYKVLFSNLDDRDGGAIVTALTQMNVPYRFSDNGGAILVPGNRVYDLRMQLAGQG 105

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG + F +++   RALEGE+AR+I+++  +  ARVH+ +P  
Sbjct: 106 LPRGGS-VGFELMDNA-RFGASQFAEQVNYQRALEGELARSIEAMHTVQHARVHLALPRQ 163

Query: 162 GSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PT SV++              AI  LVA++VP+L   +V+++D  G+LL+A
Sbjct: 164 SLFVRDRQPPTGSVLLTLYPGRSLAEAQVSAIAWLVASSVPDLSADNVSIVDQNGRLLSA 223

Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
              E   +    +   +  +      I   L   +G  N  +    E++   ++    +Y
Sbjct: 224 PAGEGRGLDADQMRFAREYEQRTVERILTILNPLVGPGNVHAQASVEVDFARREETSEIY 283

Query: 279 DPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327
            P+ +  ++   S+      ++  S          N P  + +                 
Sbjct: 284 RPNQEPGQAAVRSQQTSDSRQTNASPAAGVPGALSNQPPAATQAPLTNPPAPAQPQAQPA 343

Query: 328 ---------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                      ++++   NYE++           +++RLS+AVVVN     +       Q
Sbjct: 344 APQQAAQISGNERRDATINYEVDRTISHVKQPVGQVKRLSVAVVVNHLPNKDGD----PQ 399

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 L+++  +V  A G +  RGD++ + +  F +                       
Sbjct: 400 ALPPEELSKLTTLVREAMGYSEARGDSLNLVNSQFNDAPPTVPLWRDP--------DLIA 451

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
            I   +  V  LL+ F     +R + +     +                         D 
Sbjct: 452 TIKTALGWVFGLLIAFWAYRRIRPIVSEYLYPQI------------------------DP 487

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            A+ +   +I   +            + +  R   M   +    A +LR W   + 
Sbjct: 488 EAVAAERAEIEREAVAAARAKEVNRYEDNLQRARDMATKDPRAVAMVLRAWMTKDE 543


>gi|88704287|ref|ZP_01102001.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71]
 gi|88701338|gb|EAQ98443.1| flagellar M-ring protein FliF [Congregibacter litoralis KT71]
          Length = 574

 Score =  352 bits (903), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 130/580 (22%), Positives = 225/580 (38%), Gaps = 38/580 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI + L   F   +    TR L L   +   I L M    +V  P+Y  LY  +   D N
Sbjct: 4   AIDNNLFNRFSGFSRQPATRQLALLIGLAASIALAMGMVQWVVEPNYKPLYGTMAPEDTN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +  +L    +D+R+      ++VP+  V +AR+ LA  G P      G+E   +    G
Sbjct: 64  DVIASLEANGMDYRMDQRTGMVAVPAGEVHRARLLLAGDGYPR-GEGVGFESLYREQEIG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
           L+SFM++    RALE E+ARTI ++  +  ARVH+ M    +F +   +P ASVM+    
Sbjct: 123 LSSFMEQARFHRALESELARTISALDNVRGARVHLAMAKQSAFLRQREQPAASVMLNLYA 182

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAI 237
                 +    I HLVA++VPNL+   V+V+D  GKLL+    + E           + +
Sbjct: 183 GRTLNDRQLAGIIHLVASSVPNLESEQVSVVDQQGKLLSQQGRDDEFAFTQDQFQYTRQL 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +   I   L   LG +  R+ V A+++    +  E  Y PD+   R        + S
Sbjct: 243 ESNLSARIVDILEPILGANAVRAQVAADVDFTRVERTEETYAPDT---RVRSEQTSEETS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRS------------------------LENTDKKE 333
                        N P +                                        + 
Sbjct: 300 NQPYGGGVPGTLSNEPPIDTTVTAQQAQPNLGANAGVNTGVNVDATAQLGAIPPARTSRR 359

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
              NYE++            L++LSIAVV++    T   G +  +      + E+  +V 
Sbjct: 360 STVNYEMDKTISHVRETPGTLQKLSIAVVLDYIESTADDGTTTREPMPQERIDEVTSLVR 419

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            A G ++ RGDT+++ S  F+E        ++ S ++        +   L+ L+  L + 
Sbjct: 420 EAVGFDAARGDTVSVISASFVEAPAIEDAVIESSILEE--DWIWQLGKGLLALIVLLSLI 477

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
           F+ +  L +   +         G        + +A+    M +D + L   NQ     + 
Sbjct: 478 FVVVRPLVKFAAVPVPMMQSPQGIQGPDGQAV-AALGGAGMSDDQVTLGGQNQAGLPGTS 536

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  +   +Q       +     +R A+++R W   +
Sbjct: 537 GDGG---AGGYQQQLQMARSVAAGEPDRAAQVVRNWVSDD 573


>gi|27355280|dbj|BAC52264.1| fliF [Bradyrhizobium japonicum USDA 110]
          Length = 519

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 131/531 (24%), Positives = 223/531 (41%), Gaps = 18/531 (3%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           + +V    +  F      V +P    L+  L V D + I   L    I F + + G+ I 
Sbjct: 1   MIAVTAALVGFFAFVIMRVTTPQMTTLFTDLSVEDSSSIIKDLERQAIQFELRNEGTIIM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP   V + R+ LA           GYE+FDK ++ G TSF+Q I  +RALEGE+ARTI+
Sbjct: 61  VPKDKVTRLRMKLAEG-GLPKGGGVGYEVFDKSDALGTTSFVQNINHLRALEGELARTIR 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDM 204
           +I  I AARVH+V+P+   F +    P+AS+++R       +   AIRHLVA+AV  L  
Sbjct: 120 AIDRIQAARVHLVLPERPLFSREAPEPSASIVVRVRGALEAQQIRAIRHLVASAVNGLKP 179

Query: 205 GDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
             V+++D  G+LL                    +  +   +   +++ +G    R  + A
Sbjct: 180 QRVSIVDEAGQLLADGAATDPEQALGDERRTTFEKRMRKQVEDIVSSVVGSGRARVQLSA 239

Query: 265 ELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
           + + +        +DP+ +V RS +  ++   S T+     VTV   +P           
Sbjct: 240 DFDFNKITQTSDKFDPEGRVLRSTQTREE--SSMTADNNGQVTVNNELPGNQQN--NGVA 295

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
           + + + K EE +NYEI+  +     +  ++ R+S+AV+V+        G  A Q +    
Sbjct: 296 AKDQSKKTEETNNYEISRTTKTEVTEAGRVNRISVAVLVDGIYSKNDKGELAYQDRTKEQ 355

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS---RHFATVIN 441
           L  I  +V +A G + +RGD + + ++ F +            F+ +L          + 
Sbjct: 356 LDRIATLVRSAIGFDQKRGDQVEVVNLRFADAPSTAPIAEPSGFLGMLQFTKDDVMYFVE 415

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
             V ++  L+V F+ +  L +     D     + G          +A   G         
Sbjct: 416 LGVMMLLGLVVLFMVIRPLVKRILASDEVAAAISGVLSGPAASDEAAPAAGQAL------ 469

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                   + S    + I   V  QS  R+  + E N      I+R+W   
Sbjct: 470 ----LPGGAASAIDVATIQGQVHAQSVHRVGELAERNPNETVAIIRQWLTE 516


>gi|238784726|ref|ZP_04628730.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
 gi|238714405|gb|EEQ06413.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
          Length = 572

 Score =  352 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 121/586 (20%), Positives = 231/586 (39%), Gaps = 61/586 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       + + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRDNAFTTTLARLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLSDRDGGEIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F ++I   RALEGE+ARTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQINYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIETILAPMVGSGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQTSNSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------------PLPRSLE 327
                       N P  +                                       +  
Sbjct: 308 GSNVGGVPGALSNQPSATPVAPIEVPQPAPVAGAAGAAANNANAANRPATTTAARSTATS 367

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
           +  + ++ +N+E++     T      ++RLS+AVVVN G                  LA+
Sbjct: 368 SNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPVALSKDQLAQ 423

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           +  +   A G ++ RGDT+ + +  F      +  ++              ++N   +L+
Sbjct: 424 VESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGLSLPFWKQQSFFDQ---LLNGGRYLL 480

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             L+   L    +R +              + +     ++                    
Sbjct: 481 ILLVAWILWRKLVRPMIAKKQLADKAAASVNSMVQTAQTAETVKQSKEE----------- 529

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +  +  Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 530 -LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 571


>gi|319787100|ref|YP_004146575.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1]
 gi|317465612|gb|ADV27344.1| flagellar M-ring protein FliF [Pseudoxanthomonas suwonensis 11-1]
          Length = 573

 Score =  352 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 217/565 (38%), Gaps = 22/565 (3%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++          +   R       I + +   +   F+   P Y  LY  L+       +
Sbjct: 17  EKAASAVVKLQEMQLGRKFGTLLAIALAVAAGLYIFFWSQKPAYTPLYTGLDPKATAEAT 76

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I FRI    S+ISVP   +  AR+ LA  GL  S    G+EL ++   FG++ 
Sbjct: 77  DLLRAAQIPFRIDQATSAISVPEENLHDARLKLAGSGLTESG-RLGFELMERDPGFGVSQ 135

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E+ RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 136 FVENARYQHALETELVRTISTLRPVRDARVHLAIPKPSAFTRAREAASASVVLELRSGAV 195

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHE 240
                 +AI HLV++++P+L    VTV+D  G++++   N+    +       V+  +  
Sbjct: 196 LERNQVDAIVHLVSSSIPDLAPERVTVVDQNGRMISRNGNDSASELSAVQFEQVRRQETS 255

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G     + V  +++    +    +++ + +  RS ++S+    +   
Sbjct: 256 YNQRIRELLEPLTGSGRVNAEVTVDMDFSVTEEARELFNAEPQKLRSEQVSE--NTTAGE 313

Query: 301 QPESAVTVEQNMPH----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            P+       N P                     +      +    N+E++     T   
Sbjct: 314 GPQGIPGATSNTPPGAVAQQNADGTPAPGTVATATAAGNSSRSATRNFELDRTLQHTRQP 373

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             ++ R++ AV+V+        G+ A Q   +  LA + ++V  A G +  RGD +++ +
Sbjct: 374 AGRIRRVTAAVLVDHVPRAGGDGKVALQPLSEQELARVQELVRQAVGFDPARGDVVSVVN 433

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F+      +  ++      +      +   L   +  L + F  L    R        
Sbjct: 434 APFVREDAPAAEPLKWWEDPRMRD----IARVLAGALVVLALLFGVLRPSLRQIASPAGA 489

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           K    G++   P     ++    +    +A D++   + +    +    +S   +     
Sbjct: 490 KKSGSGEASDEPATAEVSLVEDDLDIPALAGDTAQLGLQAPGAPMALP-SSNSYEDRLRN 548

Query: 531 LLHMIEINEERFAKILRKWARSEIE 555
               +  + +R A++++ W  +E  
Sbjct: 549 AREAVRADSKRVAQVVKDWLGNEAA 573


>gi|239817137|ref|YP_002946047.1| flagellar MS-ring protein [Variovorax paradoxus S110]
 gi|239803714|gb|ACS20781.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
          Length = 560

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 115/538 (21%), Positives = 209/538 (38%), Gaps = 46/538 (8%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  +   D   I  +L + N+ ++ ++ G +I V    V + R+ LA
Sbjct: 45  FLLWSRAPDYGVLYTNVTDRDGGAIIASLQQMNVPYKFAEGGGAILVARDRVPEVRLKLA 104

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           +QGLP      G+EL D    FG ++F +++   R LEGE+AR+++SI  + +AR+H+ +
Sbjct: 105 SQGLPKGGG-VGFELMDN-QKFGTSNFAEQVNYQRGLEGELARSVESIGSVESARIHLAL 162

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +   +P+ASV++              AI H+V+++VP+LD   VTV+D  G L
Sbjct: 163 PKPSLFVRDQKKPSASVILTLHRGRSIDEGQVSAIVHMVSSSVPDLDAKSVTVVDQRGNL 222

Query: 217 LTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           L+A       L    L   Q I+      I   L   +G  N R+ V AE++    +  E
Sbjct: 223 LSAANAGARGLDVSQLKYAQEIEQGYIRRIEAILQPLVGASNVRAQVAAEIDFSVVERTE 282

Query: 276 IVYDPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLE----- 327
             Y P+     +   S+ +  S     + P        N P  +                
Sbjct: 283 ESYKPNQDPRAAAVRSQQSSESMQQGATPPGGVPGALSNQPPQTPSAPITAPPNAAAAAP 342

Query: 328 -------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                         + +K+  +NYE++            ++RLS+AVVVN     +  G+
Sbjct: 343 KAAATATAASTAPGSSRKDTTTNYELDRSIRHVQQGAGGVKRLSVAVVVNHRDTADSAGK 402

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
              +    + + +I  +V  A G +  RGD++ + +  F            + F    + 
Sbjct: 403 PGQRALTPAEIEQIRNLVKEAMGFSQERGDSLNVVNSAFAREGGDAEAGPALPFWRDPA- 461

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
           +    ++   +L+   L  F     LR L     A       ++  + P  +    T   
Sbjct: 462 NLGLAMSIAQYLLMAGLALFAWFAVLRPLLRKHLAPPAAAVPEAAPAAPGAADDDGTAAQ 521

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            N  +      +    ++                       + +    A +++ W  S
Sbjct: 522 NNARLREIERQKADLDYAHQT-------------------ADQDPRLVATLIKHWMNS 560


>gi|51596039|ref|YP_070230.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953]
 gi|51589321|emb|CAH20942.1| flagellar M-ring protein [Yersinia pseudotuberculosis IP 32953]
          Length = 570

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 127/584 (21%), Positives = 234/584 (40%), Gaps = 59/584 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F ++I   RALEGE++RTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329
                       N P V+                                    ++  + 
Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANAATTANANTTATAAKASSSN 367

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            + ++ +N+E++     T      ++RLS+AVVVN                    LA++ 
Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +   A G ++ RGDT+ + +  F  +      ++           F  ++NA  +L+  
Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L+   L    LR +              + +     + A  T     + +AL   NQ   
Sbjct: 481 LVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAETVKQSKEELALRKKNQQRV 538

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           S              +    R+  + + +    A ++R+W  ++
Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569


>gi|22126359|ref|NP_669782.1| flagellar MS-ring protein [Yersinia pestis KIM 10]
 gi|45441380|ref|NP_992919.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807202|ref|YP_651118.1| flagellar MS-ring protein [Yersinia pestis Antiqua]
 gi|108812454|ref|YP_648221.1| flagellar MS-ring protein [Yersinia pestis Nepal516]
 gi|145598582|ref|YP_001162658.1| flagellar MS-ring protein [Yersinia pestis Pestoides F]
 gi|149366222|ref|ZP_01888257.1| flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|153947408|ref|YP_001401259.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758]
 gi|162421303|ref|YP_001606485.1| flagellar MS-ring protein [Yersinia pestis Angola]
 gi|165926013|ref|ZP_02221845.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165938662|ref|ZP_02227217.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010885|ref|ZP_02231783.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210437|ref|ZP_02236472.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401031|ref|ZP_02306534.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420343|ref|ZP_02312096.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425776|ref|ZP_02317529.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468921|ref|ZP_02333625.1| flagellar M-ring protein FliF [Yersinia pestis FV-1]
 gi|218928951|ref|YP_002346826.1| flagellar MS-ring protein [Yersinia pestis CO92]
 gi|229897213|ref|ZP_04512369.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897940|ref|ZP_04513091.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902829|ref|ZP_04517946.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|270486615|ref|ZP_06203689.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294504003|ref|YP_003568065.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|21959343|gb|AAM86033.1|AE013851_5 basal-body MS (membrane and supramembrane)-ring and collar protein
           [Yersinia pestis KIM 10]
 gi|45436240|gb|AAS61796.1| flagellar M-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776102|gb|ABG18621.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|108779115|gb|ABG13173.1| flagellar M-ring protein [Yersinia pestis Antiqua]
 gi|115347562|emb|CAL20471.1| flagellar M-ring protein [Yersinia pestis CO92]
 gi|145210278|gb|ABP39685.1| flagellar M-ring protein [Yersinia pestis Pestoides F]
 gi|149292635|gb|EDM42709.1| flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|152958903|gb|ABS46364.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP
           31758]
 gi|162354118|gb|ABX88066.1| flagellar M-ring protein FliF [Yersinia pestis Angola]
 gi|165913276|gb|EDR31898.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922217|gb|EDR39394.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990229|gb|EDR42530.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207617|gb|EDR52097.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962038|gb|EDR58059.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049420|gb|EDR60828.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055175|gb|EDR64972.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229680276|gb|EEO76375.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|229688981|gb|EEO81046.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693550|gb|EEO83599.1| flagellar M-ring protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262361812|gb|ACY58533.1| flagellar M-ring protein [Yersinia pestis D106004]
 gi|270335119|gb|EFA45896.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294354462|gb|ADE64803.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|320015431|gb|ADV99002.1| flagellar M-ring protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 570

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 127/584 (21%), Positives = 234/584 (40%), Gaps = 59/584 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F ++I   RALEGE++RTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329
                       N P V+                                    ++  + 
Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANTAATANANTTATAAKASSSN 367

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            + ++ +N+E++     T      ++RLS+AVVVN                    LA++ 
Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +   A G ++ RGDT+ + +  F  +      ++           F  ++NA  +L+  
Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L+   L    LR +              + +     + A  T     + +AL   NQ   
Sbjct: 481 LVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAETVKQSKEELALRKKNQQRV 538

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           S              +    R+  + + +    A ++R+W  ++
Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569


>gi|300722640|ref|YP_003711930.1| flagellar basal-body MS-ring and collar protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629147|emb|CBJ89743.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Xenorhabdus
           nematophila ATCC 19061]
          Length = 574

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 133/592 (22%), Positives = 242/592 (40%), Gaps = 64/592 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + +Q   F    + +     + L       I + +A   ++ SP Y  LY  L   D  
Sbjct: 6   DVENQKKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWLRSPDYRVLYSNLSDKDGG 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ N+ +R ++NGS+I +P+  V + R+ LA QGLP   +  G+EL DK   FG
Sbjct: 66  EIVTQLTQMNVPYRFAENGSAIMIPTEKVHETRLKLAQQGLPKGGAT-GFELLDKE-KFG 123

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
           ++ F +++   RALEGE+ART++S+  + +ARVH+ MP    F +    P+ASV +    
Sbjct: 124 ISQFSEQVNYQRALEGELARTVESLGPVQSARVHLAMPKPSLFVREQKSPSASVTVGLLQ 183

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238
                     AI H+V+++V  L  G+VT++D +G+LLT ++   R++    L   Q I+
Sbjct: 184 GRVLDEGQINAIVHMVSSSVAGLPAGNVTIVDQSGRLLTQSDATGRDLNTTQLKYTQEIE 243

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
           +     I   LA  +G  N  + V A+++   ++     Y P+    ++   SK +  SE
Sbjct: 244 NRFRHRIETILAPVVGRGNVHAQVTAQVDFSRREETTEEYKPNQPPNQAAVRSKQSSSSE 303

Query: 299 --------------TSQPESAVTVEQNMPHVSDRKVPLPR-------------------- 324
                         ++QP +A +     P+ +                            
Sbjct: 304 QSGGPLVGGVPGALSNQPSAAPSAPIEKPNTNANTNAKDNSDEKPDQQQRNGNNRNNSYE 363

Query: 325 ---SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
              S  + ++ +E +NYE++     T      +ERLS+AVVVN   +    G    +  +
Sbjct: 364 RMVSNNHNNRYDETTNYEVDRTIRHTQLQAGAVERLSVAVVVNYTMVQGENGPET-KPLM 422

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              LA+I  +   A G ++ RGD++ +T+  F +                          
Sbjct: 423 PEQLAQIEALTREAIGFSTDRGDSLNVTNTPFNDTTEVIEALPFWQHP------------ 470

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
                   L         L          +  +  +         +A+          A 
Sbjct: 471 ------VLLDKLLDAGRWLLLALAAWLLWRKMIVPQIAKKRAAEKAALDAQKNQQKRSAE 524

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            ++  D     +  + R+N+ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 525 TNAEMDEKMRRQMARQRVNAELQSQ---RIRELAEKDPRVVALVIRQWMSNE 573


>gi|118581826|ref|YP_903076.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379]
 gi|118504536|gb|ABL01019.1| flagellar M-ring protein FliF [Pelobacter propionicus DSM 2379]
          Length = 528

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 120/561 (21%), Positives = 224/561 (39%), Gaps = 49/561 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  +   +L   + +++A V ++ +  F    F  N   Y  L+  L   D   I 
Sbjct: 3   EGLQRLIEPFMALSPGKRMLIAGVAILSVAAFAVLIFVANRVDYRPLFTNLSTEDAAEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +    ++I+ +G  I VP+ +V + R+ LA++GLP      G+E+FD+ N FG+T 
Sbjct: 63  KKLKDNKTPYQITADGKGIMVPADLVYEQRLALASEGLPQGGG-VGFEIFDRKN-FGMTE 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F+Q+I   RAL+GE++RTI  ++G+  AR+H+V+P+   F++     TAS++++  +   
Sbjct: 121 FVQKINYQRALQGELSRTISQLNGVEQARIHLVIPEKSLFKENEKPSTASIVLKMKSGRS 180

Query: 185 YKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQ 238
            +    + I HLVA+++  ++   VTVLDS GK+L       +             +  +
Sbjct: 181 LRQNEVQGIVHLVASSIEGMEADQVTVLDSRGKVLNKGGGDPDPTSKATSVMQETQRIYE 240

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +E  I   L   +G     + V A  +    +  E  +DP+S   RS + S++   + 
Sbjct: 241 KNVEERIQSMLDPVVGSGRAIARVSALFDFKQVERLEEKFDPESIAVRSEQRSEEK-GAT 299

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                    V+ N+                  K +E  NYE++  +         L RLS
Sbjct: 300 AVNAAGVPGVQTNLGRTGAGGATQAGGAA---KNDETLNYEVSRTTAKIIEPVGALSRLS 356

Query: 359 IAVVVNKGRLTEV------LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +AV+V+                     +    L +I  +V +A G N+ RGD + I ++ 
Sbjct: 357 VAVLVDGKYALPTAVKDGQTATPKYIPRSPEELQKIEALVKSAVGFNAERGDQLAIQNIP 416

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F +     +   Q  +    +  F ++   L+  +G + +    +  L     I      
Sbjct: 417 FQDTGELGNIETQKWWN---NPFFMSLFKNLLIGLGFMALIIFVIRPLLVSLKIVRPSAR 473

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E                                    S       R    +       L+
Sbjct: 474 E----------------------------SIETVHEISDKLTSAERAQISMQMAEQQNLI 505

Query: 533 HMIEINEERFAKILRKWARSE 553
              + +  + A+IL+ W   +
Sbjct: 506 DTAKKDPYQVAQILQNWIGED 526


>gi|260598447|ref|YP_003211018.1| flagellar MS-ring protein [Cronobacter turicensis z3032]
 gi|260217624|emb|CBA31913.1| Flagellar M-ring protein [Cronobacter turicensis z3032]
          Length = 571

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 130/582 (22%), Positives = 232/582 (39%), Gaps = 63/582 (10%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +   P Y  LY  L   D   I   L++ 
Sbjct: 15  VEWLNRLRANPKIPLMVAGAAAVAIIVALVLWAKQPEYRVLYSNLSDQDGGAIVTQLTQM 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +  +DNG+SI VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 75  NIPYNFADNGASIMVPAEKVYDLRLRLAQQGLPKGGA-VGFELMDQE-KFGISQFSEQVN 132

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV   ++          
Sbjct: 133 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTLSLQPGRTLDDGQV 192

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNINK 247
            A+ H+V++AV  L  G+VT++D  G+LLT +      +    L     ++  I+  I  
Sbjct: 193 AAVVHMVSSAVAGLPPGNVTLVDQAGRLLTQSGTGARDLNDAQLKYASDVEGRIQRRIES 252

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS---ETSQPES 304
            LA  +G  N  + V A+++   ++  E  Y P+S   +    S+    +       P  
Sbjct: 253 ILAPIVGSGNVHAQVTAQIDFSNKEQTEEQYRPNSDPSQMAVRSRQLNTNDQVGAGNPGG 312

Query: 305 AVTVEQNMPHV--------------------------------SDRKVPLPRSLENTDKK 332
                 N P                                           S  ++ ++
Sbjct: 313 VPGALSNQPAPANSAPIDAPAGQNANGQNANGQNANGQNAQRTQSTSTTGASSGPHSSQR 372

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           +E +NYE++     T  +   ++RLS+AVVVN  +L    G           L +I  + 
Sbjct: 373 DETTNYEVDRTIRHTKMNVGDVQRLSVAVVVNYRQL----GNGKPLALTADQLKQIEDLT 428

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A G + +RGDT+ + +  F  +    +                 +++A  +LV  ++ 
Sbjct: 429 REAMGYSDKRGDTLNVVNSPFTASDEAGAELP----FWKQQAFIDQLLSAGRWLVVLIVA 484

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             L   A+R        +   V              +       +       ++D  +  
Sbjct: 485 WLLWRKAVRPQLQRRAEEVKRV------------QEIQQQRQEVEESVEVRLSKDEQTQQ 532

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           R    R+++ V  Q   R+  M + +    A ++R+W  +E+
Sbjct: 533 RRANQRLSAEVMSQ---RIREMSDNDPRVVALVIRQWMSNEL 571


>gi|241763655|ref|ZP_04761705.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN]
 gi|241367130|gb|EER61496.1| flagellar M-ring protein FliF [Acidovorax delafieldii 2AN]
          Length = 561

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 128/566 (22%), Positives = 225/566 (39%), Gaps = 45/566 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           + +  ++L R++ + L   + + + + +AA      P Y  L+  L   D   I   LS+
Sbjct: 17  WLQRLSTLDRSQRMRLGVGVALLVAVAIAAIVLGRQPDYRVLFANLSDKDGGAIVAQLSQ 76

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ +D G +I +PS  V   R+ LA QGLP   S +G+EL  + N FG+T F + +
Sbjct: 77  MNVPYKYADGGGAILIPSDRVHDVRLRLATQGLPK-GSVAGFELM-ESNRFGITQFQERL 134

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187
              R LEGE+ R+IQ++S +  ARVH+ +P+   F +   +P+ASV+  +          
Sbjct: 135 NFQRGLEGELTRSIQALSSVQGARVHLALPNQNGFFREQQKPSASVLVSLHPGRILDRAQ 194

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMN 244
              I HLVA++VP L    V+VLD TGKLL+ +        +  + L  VQ I+ +    
Sbjct: 195 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQSPDTAAGTGVDAQQLLYVQQIEQQYTRR 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--- 301
           I   L   +G +N ++ V AE++    +     + P+   + S   S+    S   Q   
Sbjct: 255 IMDILEPVVGRNNVKAQVSAEVDFSQTESTSEQHRPNQSPDASAVRSQQVVESNGPQGNP 314

Query: 302 -PESAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIAT 347
            P        N P  +        +   T              K+E   NYE++     T
Sbjct: 315 LPTGVPGAASNQPPAASTAPINGANPAPTAAGGQQQGALGAGSKRESVINYEVDKTVRVT 374

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
              +  ++RL+ AVVVN     +  G++  +      L ++  +V    G N  RGD++ 
Sbjct: 375 RGGSGAVKRLTAAVVVNYQSAED-KGKTVAKALTPEQLEQMTALVRETIGFNKERGDSVN 433

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F  +    +        ++L    +        L   L++  L   AL+      
Sbjct: 434 LMNTPFQVDVTPANDVPLWKQPEMLELAKSFAWPVGAVLFAALVLLGLVRPALK------ 487

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                               A+       D +  +   +            +     +  
Sbjct: 488 --------------GQERPRAIAVAGGSIDALEAEQPERPALPAPAKKDELLPVTPEQLR 533

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
                 + + N    A IL+ W   E
Sbjct: 534 LEEARMLAKENPMAVANILKTWVNGE 559


>gi|186895144|ref|YP_001872256.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+]
 gi|186698170|gb|ACC88799.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+]
          Length = 570

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 128/584 (21%), Positives = 236/584 (40%), Gaps = 59/584 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F ++I   RALEGE++RTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329
                       N P V+                                    ++  + 
Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANAATTANANTTATAAKASSSN 367

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            + ++ +N+E++     T      ++RLS+AVVVN                    LA++ 
Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +   A G ++ RGDT+ + +  F  +      ++           F  ++NA  +L+  
Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L+   L    LR +         +    S+ +    + A  T     + +AL   NQ   
Sbjct: 481 LVAWILWRKLLRPMLAKKQV--ADNAAASVNNIVQTAQAAETVKQSKEELALRKKNQQRV 538

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           S              +    R+  + + +    A ++R+W  ++
Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569


>gi|288549808|ref|ZP_05968261.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
 gi|288317495|gb|EFC56433.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
          Length = 543

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 223/543 (41%), Gaps = 51/543 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ VP+  V + R+ LA
Sbjct: 26  MVLWAKSPDYRTLYSNLSDQDGGAIVTQLTQMNIPYRFADNGGALEVPADKVHELRLRLA 85

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ M
Sbjct: 86  QQGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAM 143

Query: 159 PDMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +    P+ASV   +            A+ HLV++AV  L  G+VT++D +G L
Sbjct: 144 PKPSLFVREQKSPSASVTVNLEPGRALDEGQISAVTHLVSSAVAGLPPGNVTLVDQSGHL 203

Query: 217 LTANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LT +      +    L     ++  ++  I   L   +G  N  + V A+++   ++  E
Sbjct: 204 LTQSNSAGRDLNDAQLKYAADVEGRLQRRIEAILGPVVGSSNVHAQVTAQIDFANKEQTE 263

Query: 276 IVYDPDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV------------ 320
             Y P+    +++  S+   + ++     P        N P  ++               
Sbjct: 264 EQYSPNGNPSQAVMRSRQVNENEQVGGPYPGGVPGALSNQPAPANAAPITTPAANQQNGQ 323

Query: 321 --------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                       S   T  + E +NYE++     T  +   ++RLS+AVVVN   L +  
Sbjct: 324 QNNAQTTSTAASSGPRTSSRNETTNYEVDRTIRHTKLNVGDVQRLSVAVVVNYKTLPDGK 383

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                       + +I  +   A G + +RGDT+ + +  F                   
Sbjct: 384 ----PLPLTTEQMKQIEDLTREAMGYSEKRGDTLNVVNSPFSSVDETGGELP----FWQQ 435

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
                 +++A  +L+  ++   L    +R         +     +  ++      AV   
Sbjct: 436 QAFIDQLMSAGRWLLVLIVAWLLWRKGVRPQLQRRAEAERAAQ-EQQVTRQDTEEAVEVR 494

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           L  ++ I    +NQ + +   +               R+  M + +    A ++R+W  +
Sbjct: 495 LSKDEQIQQRRANQRMGAEVMS--------------QRIREMSDNDPRVVALVIRQWMGN 540

Query: 553 EIE 555
           E E
Sbjct: 541 EHE 543


>gi|318605263|emb|CBY26761.1| flagellar M-ring protein FliF [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 559

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 116/538 (21%), Positives = 219/538 (40%), Gaps = 48/538 (8%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             +  SP Y  LY  L   D   I   L++ NI +R +DNG ++ +P+  V + R+ LA 
Sbjct: 45  MLWAKSPDYRVLYSNLNDRDGGDIVTQLTQLNIPYRFADNGGALLIPADKVHETRLRLAQ 104

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI ++  ++  RVH+ MP
Sbjct: 105 QGLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMP 162

Query: 160 DMGSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +    PTASV   ++           AI ++V+++V  L   +VTV++ TG+LL
Sbjct: 163 KPSLFVREQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPANVTVVNQTGRLL 222

Query: 218 TANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           T ++     +    L     +++  +  I   LA  +G  N  + V A+++  +++  + 
Sbjct: 223 TQSDSAGRDLNAAQLKFTNEVENRFQRRIETILAPMVGSGNVHAQVTAQVDFASREQTDE 282

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV------------- 320
            Y P+    +    S+    SE               N P  +                 
Sbjct: 283 EYKPNQAANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPSATPVAPIEVPQATPAAGAG 342

Query: 321 -----PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
                    +  +  + ++ +N+E++     T      ++RLS+AVVVN G         
Sbjct: 343 AAANAAKQTATSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAG 398

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                    LA++  +   A G ++ RGDT+ + +  F      +   +           
Sbjct: 399 KPIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFNATDDASGSNLPFWQQPS---F 455

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
           F  ++N   +L+  L+   L    +R L              + +     ++        
Sbjct: 456 FDQLLNIGRYLLILLVAWILWRKLVRPLIAKKQEADKAAASVNNIVQAAQTTETAKQTKE 515

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                         +  +  Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 516 E------------LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 558


>gi|2832233|gb|AAC01568.1| M-ring [Brucella abortus]
          Length = 540

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 194/507 (38%), Positives = 293/507 (57%), Gaps = 3/507 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +   GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSYGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+K+++T  D Y ++RLSIA
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSKTVSTVSDGYSIKRLSIA 367

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 368 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 427

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 428 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQ 506
               P        +       +     
Sbjct: 488 EVATPNFIGGAESVGEGVQAVIGGPAA 514


>gi|21231374|ref|NP_637291.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768573|ref|YP_243335.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991617|ref|YP_001903627.1| flagellar MS-ring protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21113037|gb|AAM41215.1| flagellar protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573905|gb|AAY49315.1| flagellar protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167733377|emb|CAP51578.1| Flagellar biosynthesis lipoprotein FliF [Xanthomonas campestris pv.
           campestris]
          Length = 573

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 116/567 (20%), Positives = 230/567 (40%), Gaps = 27/567 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    S+  TR L + ++I + +   +A  F+   P Y  LY  L+       +
Sbjct: 15  EKAGQWFDRIRSMQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQALYTGLDDKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I F+I  +  +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPFKIDQSTGAISVPQDRLYDARLKLAGSGLTGQQTGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G       V  +++    +    +Y+ +    RS ++S     +  +
Sbjct: 255 YNQRIRELLEPMTGAGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVS--DSSTSAT 312

Query: 301 QPESAVTVEQN-------------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            P+       N              P           +      K    NYE++     T
Sbjct: 313 GPQGPPGATSNSPGQPPAPAATAGAPGAPAAGQAATPAAPTESSKSATRNYELDRTLQHT 372

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT++
Sbjct: 373 RQPAGRIKRVSVAVLLDNVPRPGAKGKIVEQPLTAAELTRIEGLVKQAVGFDAARGDTVS 432

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  F+   +      +      +       +  LV  V  L + F  +    R     
Sbjct: 433 VMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTGT 488

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            A K +         P         ++  D+  +    +D     ++ +  I    + + 
Sbjct: 489 AAVKEKHKKGGNDGTPQS---ADVRMVDEDDDLMPRLEEDTAQIGQDKKLPIALPDAYEE 545

Query: 528 DLRL-LHMIEINEERFAKILRKWARSE 553
            +RL    ++ + +R A++++ W  SE
Sbjct: 546 RVRLAREAVKADSKRVAQVVKGWVASE 572


>gi|319406987|emb|CBI80624.1| Flagellar M-ring protein [Bartonella sp. 1-1C]
          Length = 554

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 201/548 (36%), Positives = 311/548 (56%), Gaps = 11/548 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L     +   LG  R++ L  V L      + + F++  P Y+ LYV L   DVNR+ +A
Sbjct: 9   LSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYETLYVGLSRDDVNRMGMA 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LSEA I F +S +G ++ VP     +AR+ LA +GLP+S+ N+GYELFD + S GLTSFM
Sbjct: 69  LSEAGIAFDVSSDGGTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMGSLGLTSFM 127

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           QEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR  +    +
Sbjct: 128 QEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIRTNSSFSVE 187

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEIEMNI 245
            A++IR LVAAAVP+L+   VTV+D+ G+LL +     N     ++ + Q +  +I+ NI
Sbjct: 188 FAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQVASQIDANI 247

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S+ ++   A
Sbjct: 248 RKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADSQNNRNSDA 307

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           V VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y +++L++A+VV++
Sbjct: 308 VGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKLAVAIVVDR 367

Query: 366 GRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
            RL    G +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+ N   +   +
Sbjct: 368 ARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGNSEADMAPI 427

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           Q      LSR+ + +IN +  ++   L+ FLG+  L R                      
Sbjct: 428 QEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENSANAVAGLGNI 487

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
            +                ++N        +  S + + +      RL  MI ++EERFA 
Sbjct: 488 PALEHQYQDNAEFGGVTGTNN--------DTLSNLRNRMRVPPQNRLEQMIAMDEERFAG 539

Query: 545 ILRKWARS 552
           +LR+W   
Sbjct: 540 VLREWVHD 547


>gi|319409176|emb|CBI82820.1| Flagellar M-ring protein [Bartonella schoenbuchensis R1]
          Length = 555

 Score =  351 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 211/552 (38%), Positives = 323/552 (58%), Gaps = 11/552 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L  L    ++   LG  R++ L  V +      + + F++  P Y+ LY+ L   DVNR
Sbjct: 5   LLAFLSSSGQALQKLGVKRLVALGLVGITLFGTILFSSFYLTRPSYETLYIGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + VAL E  I F +S +GSSI VP     KAR+ LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGVALGETGIAFDVSSDGSSIQVPVGQAEKARMFLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR    
Sbjct: 124 TSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIRTDGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEI 241
              +SA++IR LV+AAVP+L+   VTV+D+ G+LL +     N     ++ + Q +  +I
Sbjct: 184 FSAESAQSIRQLVSAAVPSLEASSVTVMDTRGQLLASGVDAANGASVRMALLEQQVASQI 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI K L  +LG+D+F+++V  +L+ + QQI E V+DP+S+V RS+R  +D   S+ S+
Sbjct: 244 DANIRKQLVPYLGLDHFQTSVQVDLDTNRQQINETVFDPESQVVRSVRSVRDQADSQNSR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              AV VEQN+P          RS +  D++EE +NYEIN+K I+T  D Y +++L++A+
Sbjct: 304 NNDAVGVEQNIPQEEIANGGGERSTDKKDRREETTNYEINSKIISTVKDGYSVKKLAVAI 363

Query: 362 VVNKGRLTEVLGRSAD-QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VV++ RL    G + D +  I+  +  I ++V+ A G++ +RGD I +T++DF+     +
Sbjct: 364 VVDRARLALAKGNNGDSESFINDEINRIQQMVATAAGLDPKRGDVINVTAVDFMGYSDKD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              +Q      LS + +T +N L  +V  LL+ FLG+  L R            G K++ 
Sbjct: 424 LTPMQTPIWKSLSPYLSTFVNGLALVVAVLLILFLGVRPLMREMR--------EGQKALD 475

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +     + +       +   ++     I     +  + + S +      RL  MIEI+E+
Sbjct: 476 NEQNALAGLQDVPALENQSNINGEFGGIAGAKDDTLNDLRSRMRVAPQNRLEKMIEIDEQ 535

Query: 541 RFAKILRKWARS 552
           RFA++LR+W   
Sbjct: 536 RFAEVLREWVND 547


>gi|330502763|ref|YP_004379632.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
 gi|328917049|gb|AEB57880.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
          Length = 594

 Score =  351 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/586 (20%), Positives = 232/586 (39%), Gaps = 55/586 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++   +   R L L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25  LSFLENLAEMSVLRQLGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLNGMDATQVVETL 84

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + + ID+ I  N  ++ V +  + +AR+ LAA G   + ++ G+E+ D+    G + FM+
Sbjct: 85  TASGIDYTIEPNSGALLVKADDLARARMRLAAAGAAPTDTSVGFEILDREQGLGTSQFME 144

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
                R LEGE+ART+ S++ + AARVH+ MP    F +   +P+ASV++          
Sbjct: 145 ATRYRRGLEGELARTVASLNNVKAARVHLAMPKASVFVRDERKPSASVLVELYPGRALEP 204

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP LD G VTV+D  G LL+  +   E  + GK     + ++     
Sbjct: 205 SQVMAIVNLVATSVPELDKGQVTVVDQKGNLLSDQQELSELTMAGKQFDYTRRMEGLFTQ 264

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  L   LG   +++ V A+++  + +    +++PD    RS +   + ++S +  P+
Sbjct: 265 RVHNILQPVLGTGRYKAEVSADVDFSSVESTSEMFNPDQPALRSEQQVNEQRQS-SLPPQ 323

Query: 304 SAVTVEQNMP----------------------------------HVSDRKVPLPRSLENT 329
                  N P                                         P+       
Sbjct: 324 GVPGALSNQPPGPAAAPQQAAGAAAPAGPVAAGQPLVDANGQQIMDPATGQPMLAPYPAD 383

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLS-IAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            +++   N+E++     T     +L RLS   VV ++ R+    G +         LA  
Sbjct: 384 KREQSTRNFELDRSISYTRQQQGRLRRLSVAVVVDDQVRVDPATGETTRVPWTADDLARF 443

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  + G ++ RGD++++ +  F  +       +           F  ++  ++ ++ 
Sbjct: 444 TRLVQDSVGFDASRGDSVSVINTAFTASLGEEIPDIPF----YTQPWFWDIVKQVLGVLF 499

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L++ F  L  +          K   G            A   G + +D ++L      +
Sbjct: 500 ILVLVFGVLRPVLNNITGGGRGKDLAGSG---DVELGEMAGLDGELSDDRVSLGGPQSIM 556

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                       S         +  ++  +  R A+++++W  S+ 
Sbjct: 557 LPSP--------SEGYDAQLNAIKSLVAEDPGRVAQVVKEWINSDE 594


>gi|269139487|ref|YP_003296188.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Edwardsiella tarda EIB202]
 gi|267985148|gb|ACY84977.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Edwardsiella tarda EIB202]
 gi|304559376|gb|ADM42040.1| Flagellar M-ring protein FliF [Edwardsiella tarda FL6-60]
          Length = 572

 Score =  351 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/581 (20%), Positives = 222/581 (38%), Gaps = 59/581 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                    +     + L     V I + +    +  +P Y  LY  +   D   I   L
Sbjct: 18  NSIKAILERVRANPKIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQL 77

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++NG+++ VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 78  TQMNIPYRFANNGATLMVPADKVYDTRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 135

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185
           +I   RALEGE+ARTI+++  +V+ARVH+ MP    F +   +P+ASV +          
Sbjct: 136 QINYQRALEGELARTIETLGPVVSARVHLAMPKPSLFVREQKQPSASVTLTLEPGRALDD 195

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMN 244
               AI ++V+++V  L  G+VTV+D  G LLT  +   R++    L     ++  ++  
Sbjct: 196 GQINAIVYMVSSSVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRR 255

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL---SKDAQRSETSQ 301
           I   L   LG  N  + V A+L+  +++  +  Y P+    ++         + +S    
Sbjct: 256 IETILQPMLGSGNVHAQVTAQLDFASREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQL 315

Query: 302 PESAVTVEQNMPHVSDRKVPLP---------------------------RSLENTDKKEE 334
                    N P                                      S     +++E
Sbjct: 316 NGGVPGALSNEPAPPATGNIDKPRSAQGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDE 375

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
            +NYE++     T      +ERLS+AVVVN         +  +       + +IN +V  
Sbjct: 376 TTNYEVDRTIRHTQARAGNIERLSVAVVVNYAT----DTKGKEIALSQEKMDQINNLVRE 431

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A G +  RGDT+++ +  F   +                     +     +L+  L+   
Sbjct: 432 AMGFSQSRGDTLSVVNTPFNSVEDNGGELP----FWQKQSFIDLLTTLGRYLLVALVAWL 487

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
           L    ++ +             +    P  +  A                 Q      + 
Sbjct: 488 LWRKLVKPMLTKQQRAAAAAQQRVDAPPLSVQPA----------------KQPSNEELQQ 531

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            +       ++    R+  M E +    A ++R+W  +E +
Sbjct: 532 RRKLQQRSTAEAQTERVREMAEQDPRVVALVIRQWMSTEQQ 572


>gi|253998468|ref|YP_003050531.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4]
 gi|253985147|gb|ACT50004.1| flagellar M-ring protein FliF [Methylovorus sp. SIP3-4]
          Length = 576

 Score =  351 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 222/549 (40%), Gaps = 50/549 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  L+      D   I  +L + NI ++ S++G++I VP+S V + R+ LA
Sbjct: 44  FWLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLA 103

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           AQGLP    N G+EL  +   FG++ F++++   R LEGE+ R+IQ+IS +  AR+H+ +
Sbjct: 104 AQGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAI 161

Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +   +PTASV++          +   AI HLVA++VP L + +VTV+D  G L
Sbjct: 162 PKPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNL 221

Query: 217 LTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           L+  +      N+    L  +  +Q  I   +   +A  +G  N  +   AE++  TQ+ 
Sbjct: 222 LSDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQ 281

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLEN-- 328
               Y P+   +     S+ +  S+++ P           N P              N  
Sbjct: 282 AAETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAG 341

Query: 329 ------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                                     +K   +NYE++            ++RL++AVVVN
Sbjct: 342 APGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 401

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
             ++ +  G+  ++   D+   EI+ +   A G N  RGD++T+ +  F   Q+     +
Sbjct: 402 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGEQIEAIPDL 461

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
            +             +     L+   L+    +  + +     D K+         +   
Sbjct: 462 PLWKQPENIEMAKEWLKMAAGLLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDAAVV 521

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
             +    G    + + +                ++ +   +Q+      + + N +  A 
Sbjct: 522 TLTGAAEGAEGENMVGVP--------------RKLAAKGYEQNLEAAKQLAKENPKLVAS 567

Query: 545 ILRKWARSE 553
           ++  W   E
Sbjct: 568 LVTNWVSKE 576


>gi|238798572|ref|ZP_04642049.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
 gi|238717592|gb|EEQ09431.1| Flagellar M-ring protein [Yersinia mollaretii ATCC 43969]
          Length = 572

 Score =  351 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 122/586 (20%), Positives = 233/586 (39%), Gaps = 61/586 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       + + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRDNAFTTTLARLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLSDRDGGEIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F +++   RALEGE+ARTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQVNYQRALEGELARTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRF 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIETILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQTSNSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-------------------------------PLPRSLE 327
                       N P  +                                       +  
Sbjct: 308 GSNVGGVPGALSNQPSATPVAPIEVPQPAPAAGAAGATANNANAANRPAATTAARSTATS 367

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE 387
           +  + ++ +N+E++     T      ++RLS+AVVVN G                  LA+
Sbjct: 368 SNSRHDQTTNFEVDRTIRHTQQQAGIVQRLSVAVVVNYGS----DKAGKPVALSKDQLAQ 423

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
           +  +   A G ++ RGDT+ + +  F      +  ++           F  ++NA  +L+
Sbjct: 424 VESLTREAMGFSTDRGDTLNVVNTPFNATDDGSGSSLPFW---QQQSFFDQLLNAGRYLL 480

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             L+   L    +R +              + +     ++                    
Sbjct: 481 ILLVAWILWRKLVRPMITKKQIADKAAASVNSMVQTAQTAETVKQSKEE----------- 529

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +  +  Q R+++ V  Q   R+  + + +    A ++R+W  ++
Sbjct: 530 -LALRKKNQQRVSAEVQAQ---RIRELADKDPRIVALVIRQWMSND 571


>gi|319898649|ref|YP_004158742.1| flagellar M-ring protein [Bartonella clarridgeiae 73]
 gi|319402613|emb|CBI76158.1| Flagellar M-ring protein [Bartonella clarridgeiae 73]
          Length = 557

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 201/552 (36%), Positives = 312/552 (56%), Gaps = 8/552 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
            L  L     +   LG  R++ L  + L      + + F++  P Y+ LYV L   DVNR
Sbjct: 5   FLAFLSSSGNALHKLGAKRLIALGIIGLTLFGTILFSSFYLTRPVYETLYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL E  I F +S +GS++ VP     +AR+ LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGMALGEVGIAFDVSADGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR    
Sbjct: 124 TSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIRTNGG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEI 241
              +SA++IR LVAAAVP+L+   VTV+D+ G+LL +     N     ++ + Q +  +I
Sbjct: 184 FAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGTSMMMASLEQQVASQI 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S+ ++
Sbjct: 244 DANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADSQNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y +++L++A+
Sbjct: 304 NSDAVGVEQNIPQEEIANGSGERSTDKKDRREETTNYEINSKTISTVSDGYSVKKLAVAI 363

Query: 362 VVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VV++ RLT     +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+ +   +
Sbjct: 364 VVDRARLTLPDSTKPTSESALNEEINRIQQMVATAAGLDPKRGDIINVTAVDFIGHTESD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              VQ+    +LSR+ + +IN +  ++  LL+ FLG+  L R                  
Sbjct: 424 MIPVQMPLWKLLSRYTSALINGVALVIAVLLILFLGVRPLMREMREGKKALENSKNAMAD 483

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                +                S        + +    + + +      RL  MI ++EE
Sbjct: 484 LENIPALEHQYQANAEF-----SGITGTSDDTHDALHNLRNRMRVPPQNRLEQMIAMDEE 538

Query: 541 RFAKILRKWARS 552
           RFA +LR+W   
Sbjct: 539 RFAGVLREWIND 550


>gi|313200543|ref|YP_004039201.1| flagellar m-ring protein flif [Methylovorus sp. MP688]
 gi|312439859|gb|ADQ83965.1| flagellar M-ring protein FliF [Methylovorus sp. MP688]
          Length = 580

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 223/549 (40%), Gaps = 50/549 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  L+      D   I  +L + NI ++ S++G++I VP+S V + R+ LA
Sbjct: 48  FWLWSQQPEYRVLFSNYADKDGGAIVASLEQMNIPYKFSESGTAILVPASQVHQVRLKLA 107

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           AQGLP    N G+EL  +   FG++ F++++   R LEGE+ R+IQ+IS +  AR+H+ +
Sbjct: 108 AQGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERSIQTISAVEVARIHLAI 165

Query: 159 PDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +   +PTASV++          +   AI HLVA++VP L + +VTV+D  G L
Sbjct: 166 PKPSVFVRDQQKPTASVLLNLRPGRMLDQQQVSAIVHLVASSVPELPIANVTVVDQNGNL 225

Query: 217 LTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           L+  +      N+    L  +  +Q  I   +   +A  +G  N  +   AE++  TQ+ 
Sbjct: 226 LSDTDKKAGRNNLDPTQLKYIDELQQNIVRRVESIIAPMVGAKNVHAEASAEVDFSTQEQ 285

Query: 274 REIVYDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLEN-- 328
               Y P+   +     S+ +  S+++ P           N P              N  
Sbjct: 286 AAETYRPNQAPDAMSVRSQQSNESQSTSPAGVGGVPGALSNQPPAPATAPLNTAVPANAG 345

Query: 329 ------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                                     +K   +NYE++            ++RL++AVVVN
Sbjct: 346 APGAGTPANAAAANAANATPAVPVNTQKNVTTNYELDKTIRYVQQPMGGVKRLTVAVVVN 405

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
             ++ +  G+  ++   D+   EI+ +   A G N  RGD++T+ +  F  +Q+     +
Sbjct: 406 HKQVVDKNGKVTNRPLTDAEKTEISDLAKQAMGFNQERGDSLTVVNSSFAGDQIEAIPDL 465

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
            +             +     L+   L+    +  + +     D K+         +   
Sbjct: 466 PLWKQPENIEMAKEWLKMAAGLLVIFLLYRKLMKPMMQKLVKSDEKEALPAPGDDDAAVV 525

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
             +    G    + + +                ++ +   +Q+      + + N +  A 
Sbjct: 526 TLTGAAEGAEGENMVGVP--------------RKLAAKGYEQNLEAAKQLAKENPKLVAS 571

Query: 545 ILRKWARSE 553
           ++  W   E
Sbjct: 572 LVTNWVSKE 580


>gi|92114078|ref|YP_574006.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM
           3043]
 gi|91797168|gb|ABE59307.1| flagellar M-ring protein FliF [Chromohalobacter salexigens DSM
           3043]
          Length = 594

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 203/550 (36%), Gaps = 47/550 (8%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +  +P Y  LY  L  +D  +I   L    + +  S+NG ++ VP+  V K R+ LA
Sbjct: 54  LLMWARAPEYRVLYSTLTDADGGKIVSELDSMGVPYEFSENGQALLVPADQVNKLRLQLA 113

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP +S   GYEL D+  SFG++ F + +   RALEGE+ARTI+ +  +  ARVH+ M
Sbjct: 114 EQGLPEASG-VGYELMDE-QSFGISQFTEHVNYQRALEGELARTIEDLGPVSKARVHLAM 171

Query: 159 PDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                F +     +ASVM+             +AI H+V+++V  L + DV V+D TG+L
Sbjct: 172 AKPSVFVRESEPASASVMLDLQRGRVLGEGQVQAIMHMVSSSVSELAISDVAVVDQTGRL 231

Query: 217 LTANEMERNI-LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           L+          G  L  V  ++      I   LA  LG  N ++ V A+L+   ++   
Sbjct: 232 LSPASDGNEALNGSQLDYVARVERNYAERIESILAPILGARNVKAEVSAQLDFSEREGTS 291

Query: 276 IVYDPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSDRKV------------ 320
             Y P+     +   S+        +            N P  +                
Sbjct: 292 ETYGPNQPPNEAAVRSEQTSLSYSGDGDLAMGIPGALSNQPPGTAASPINAPQEDDAGDG 351

Query: 321 ------------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                 +      ++   NYE++       H+   +ERL+ A+V
Sbjct: 352 EGEDAQDDGNQDEDGEATTQENATLGRTSRDNTINYEVDRTVEHIQHETGTIERLNAAIV 411

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN     +  G        D  +A I  +   A G +  RGD + + +  F +       
Sbjct: 412 VNYRDGVDEDGNPTRVPLSDQEIANIRSLAQQAIGFSQARGDQLEVVNSPFDDTS-EQRP 470

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                   +L     T+   L+  +  L + F  L  L +      A        +  + 
Sbjct: 471 EPAWWESPLLWSLATTLGQYLLIGLVALFLWFKVLRPLIQRQTERPAFTPATAAPAGAAG 530

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
              + A T            +  Q              S   +Q+   +  + + +    
Sbjct: 531 GAEAYAATAAEGTGAEEEPPAPPQKRRERR--------SASYEQNLRDVREIAQEDPRLV 582

Query: 543 AKILRKWARS 552
           A I+R W  S
Sbjct: 583 AMIVRGWMSS 592


>gi|290475703|ref|YP_003468592.1| flagellar basal-body MS(membrane and supramembrane)-ring and collar
           protein [Xenorhabdus bovienii SS-2004]
 gi|289175025|emb|CBJ81828.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Xenorhabdus
           bovienii SS-2004]
          Length = 569

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 126/585 (21%), Positives = 225/585 (38%), Gaps = 56/585 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + +Q   F    + +     + L       I + +A   ++ SP Y  LY  L   D  
Sbjct: 7   DVENQNKGFSAIISRIKADPKVPLLVAGSAAIAIVVALFLWMRSPDYRVLYSNLSDKDGG 66

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ NI +R ++N S++ +P+  V +AR+ LA QGLP   +  GYEL DK   FG
Sbjct: 67  EIVTQLTQMNIPYRFAENSSALMIPADKVHEARLKLAQQGLPKGGA-VGYELLDKE-KFG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
           ++ F +++   RA EGE++RTI+S+  + +ARV + +P    F +    PTASV +R   
Sbjct: 125 ISQFSEQVNYNRAKEGELSRTIESLDPVESARVILSIPKPSLFVREQKSPTASVTVRLLQ 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQ 238
                     AI HLV++ V  L   +V ++D +G+LLT  +    ++    L  +Q ++
Sbjct: 185 GRTLDEGQVNAIAHLVSSGVAGLPPSNVKIVDQSGRLLTQADANGLDLNTTQLKYIQEVE 244

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              +  I   L   +G  N  + V A+L+   ++     Y P+     +  LSK +  SE
Sbjct: 245 KRFQHRIETILTPVVGRGNVHAQVTAQLDFSRREQTAEEYKPNQPPNEAAVLSKQSSSSE 304

Query: 299 TSQP---ESAVTVEQNMPHVSDRKVPLPR---------------------------SLEN 328
            S             N P  +                                   +   
Sbjct: 305 QSGGSLVGGVPGALSNQPSAAPSAPIEKPNPDTKGKGDEKSDQNRNSTYNNYERLVNNSR 364

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            ++ +E  NY++      T      +ERLS+AVV+N        G    +      L++I
Sbjct: 365 NNRHDELINYQVGKTISHTQLQVGAVERLSVAVVINYATTQGENGPET-KALTPEQLSQI 423

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G +++RGD++ + +  F +                        +    +L+ 
Sbjct: 424 EALTREAMGFSTKRGDSLNVVNTPFNDTAEVIEPLP----FWQHPVLLEKTLELGRWLLL 479

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L+   L    +        A +              +      L       L       
Sbjct: 480 ALVAWLLWRKMIVPQIAKKRAAEKAALNAQKNQQKQQAPESNAELDEKMRRKLA------ 533

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  + R+N+ +  Q   R+  + E +    A ++R+W  +E
Sbjct: 534 -------RQRVNAEIQSQ---RIRELAEKDPRVVALVIRQWMSNE 568


>gi|52841987|ref|YP_095786.1| flagellar MS-ring protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148359304|ref|YP_001250511.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           str. Corby]
 gi|52629098|gb|AAU27839.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|148281077|gb|ABQ55165.1| flagellar basal body M-ring protein FliF [Legionella pneumophila
           str. Corby]
 gi|307610459|emb|CBX00030.1| flagellar M-ring protein [Legionella pneumophila 130b]
          Length = 544

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL               L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  ++++
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337
            +   +         N P  +          +N                    + +   N
Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +    +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +       F +VI  +   +  L + F  
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQIGGALFILAILFGV 475

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  + +    +                   +  T     +  I+                
Sbjct: 476 LRPMLKTLASNK-----------DMDQATDNQDTGDFTLDGKISFR-------------- 510

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
              +    +     L  +++   +R A++++ W 
Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|54297673|ref|YP_124042.1| flagellar MS-ring protein [Legionella pneumophila str. Paris]
 gi|53751458|emb|CAH12876.1| Flagellar M-ring protein [Legionella pneumophila str. Paris]
          Length = 544

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEIMTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL               L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  ++++
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337
            +   +         N P  +          +N                    + +   N
Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +    +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +       F +VI  +   +  L + F  
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQIGGALFILAILFGV 475

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  + +    +                   +  T     +  I+                
Sbjct: 476 LRPMLKTLASNK-----------DIDQATDNQDTGDFTLDGKISFR-------------- 510

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
              +    +     L  +++   +R A++++ W 
Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|54294647|ref|YP_127062.1| flagellar MS-ring protein [Legionella pneumophila str. Lens]
 gi|53754479|emb|CAH15963.1| Flagellar M-ring protein [Legionella pneumophila str. Lens]
          Length = 544

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQIGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEILTVLERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYKQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL               L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSTGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  ++++
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337
            +   +         N P  +          +N                    + +   N
Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +    +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +       F +VI  +   +  L + F  
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFLSVIKQIGGALFILAILFGV 475

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  + +    +                   +  T     +  I+                
Sbjct: 476 LRPMLKTLASNK-----------DMDQATDNQDTGDFTLDGKISFR-------------- 510

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
              +    +     L  +++   +R A++++ W 
Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|126665015|ref|ZP_01735998.1| flagellar M-ring protein [Marinobacter sp. ELB17]
 gi|126630385|gb|EBA01000.1| flagellar M-ring protein [Marinobacter sp. ELB17]
          Length = 569

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 114/560 (20%), Positives = 227/560 (40%), Gaps = 36/560 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            + F     L   R + L   +   + L +A   +   P+Y  +   L   +   ++  L
Sbjct: 27  SRAFMGFNRLDLLRQIGLMVGLAASVALGVAVVLWAQEPNYQPVLGDLSSYNPQDVTSIL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
             + ID+++     ++ V +  V  AR+ LAA+G+ +     G+EL D+    G + +M+
Sbjct: 87  DSSGIDYKMDPRTGALLVVADQVYNARLRLAAEGV-TDQKTLGFELLDQDRGLGTSQYME 145

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
            I+  R LEGE+ARTI S+ G+ +ARVH+ +P+   F +    P+ASV +        + 
Sbjct: 146 TISYRRGLEGELARTIASMRGVRSARVHLAIPERSVFIRDAREPSASVFLEVFAGRRPEQ 205

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEM 243
               AI +LVA +VP +    VTV+D  G LLT  + E +             ++  +  
Sbjct: 206 EYIAAIVNLVAGSVPMMTQSGVTVVDQNGNLLTGADAETDTDRMSDQYDYTDRVEERLSR 265

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            ++  ++  +G   +R+ V A+L+  + +  E +++P+ +  RS       +RS    P 
Sbjct: 266 RVSSLISPIVGEGRYRTEVSADLDFSSVERAEELFNPEQQAVRSE-RQLTERRSAGDGPI 324

Query: 304 SAVTVEQNMPHVSDRKVPL-----------PRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                  N P  +                 P       + E   NYE++        +  
Sbjct: 325 GIPGALSNQPPANATVPQQANAGANADGAEPAPAPVDVRSESTRNYEMDRTVSYVRQELG 384

Query: 353 KLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +++RL++A+ V+  ++     G    +   +  L  ++ +V  A G ++ RGD++T+ + 
Sbjct: 385 RIKRLTVALAVDDIKVVNADTGAVTYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNT 444

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F   Q+      +          F  ++  L+  +  L++    L    +     +   
Sbjct: 445 AFAPEQVLEYDAPRFWQQP----WFWDLMKQLLAGLVVLVLVLGLLRPTLKNLASGNRGL 500

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
              G                G    D I    S +   ++  +L    ++    +    L
Sbjct: 501 AGSG--------------NEGYGDLDGIEGGDSLRRAMANQDDLLLPGSTGGYDRQLNAL 546

Query: 532 LHMIEINEERFAKILRKWAR 551
             +I  +  R A+++R+W  
Sbjct: 547 KGLIAEDPARVAQVMRQWVN 566


>gi|291613068|ref|YP_003523225.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1]
 gi|291583180|gb|ADE10838.1| flagellar M-ring protein FliF [Sideroxydans lithotrophicus ES-1]
          Length = 546

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 120/560 (21%), Positives = 232/560 (41%), Gaps = 39/560 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              +    +   + L L   +   + L      +  +P Y  LY  +   D   +  +L 
Sbjct: 11  SLTRLLFGMPSQQKLGLIVAVAATVALLAGLFMWGQTPDYRVLYANMSERDGGAVIESLQ 70

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           + NI ++ +  G ++ VP+  V + R+ +AA+GLP      G+EL  +   FG + F+++
Sbjct: 71  QQNIPYKFT-EGGTLMVPADRVYEVRLQMAAKGLPK-GGTVGFELM-ENQKFGTSQFLEQ 127

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYK 186
           +   RALEGE++R++++I+ + +ARVH+ +P    F K   +P+ASV++  RA N     
Sbjct: 128 VNYQRALEGELSRSVETIASVASARVHLAIPKQSVFVKEQQKPSASVILSLRAGNSLDEG 187

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243
              AI HL++++VPN++  +VTV+D +G LL+    +  E+ +    L  V+ I+ +   
Sbjct: 188 QVSAIVHLISSSVPNMNAQNVTVVDQSGTLLSSARDSNAEQLMDATQLKYVRQIEQDYVK 247

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD--AQRSETSQ 301
            I   L    GV N R+ V A L+    +     + P+    ++   S      ++ T+ 
Sbjct: 248 RIEDILIPITGVQNVRAQVTASLDFSQTEQTAETFRPNQPPNQAAVRSLQTLETQNGTTS 307

Query: 302 PESAVTVEQNMPHVSDRKV--------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                    N P V                        KE  +NYE++     T      
Sbjct: 308 TGGVPGALSNQPPVPATAPIVTPASAVVAAAGTAGNMHKELTTNYEVDRTIQHTKLPVGS 367

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLSIAVVVN    T   G++  +   D+  A+I  +V    G +++RGD++ + +  F
Sbjct: 368 IKRLSIAVVVNNPSTTGKDGKATSRPYTDAEKAQITALVKETVGFDAKRGDSLNLLNSAF 427

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            E Q   + T      D ++     +   L+   G   + F  +    +  +   A +  
Sbjct: 428 NEQQEIIAETPMWKQPDTIAM-AKDIFKYLLIAGGIGFLLFGIIKPAFKTISEQSAAQET 486

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               +         A                            ++ ++   + +      
Sbjct: 487 AMMSAAQHGQISHQAGNAAGQ--------------------YAAQQSASSYEDNLQLAKQ 526

Query: 534 MIEINEERFAKILRKWARSE 553
           + + + +  A ++++W   E
Sbjct: 527 LAKDDPKIVATVVKEWVNKE 546


>gi|322421735|ref|YP_004200958.1| flagellar M-ring protein FliF [Geobacter sp. M18]
 gi|320128122|gb|ADW15682.1| flagellar M-ring protein FliF [Geobacter sp. M18]
          Length = 524

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 125/559 (22%), Positives = 233/559 (41%), Gaps = 46/559 (8%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  +   +L   + L++  V L  ++ F A     N   Y  L+  L   D   I 
Sbjct: 3   EGLKKLLEPFLALSAGKRLVVGGVALASLLAFAALITVANKTDYRPLFANLTSEDAGEIV 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L E  + ++I+ +G +I VPS  V   R+ +A+ GLP      GYE+FD+ N FG+T 
Sbjct: 63  KKLKEQKVPYQIAADGKAIMVPSDKVYDLRLSMASDGLPQGGG-IGYEIFDRKN-FGMTE 120

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-- 182
           F+Q++   RAL+GE++RTI  I+G+ +ARVH+ +P+   F+      TASV+++  +   
Sbjct: 121 FVQKLNYQRALQGELSRTISQIAGVESARVHLAIPEKTLFKDAEKPATASVVLKMKSNRM 180

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQH 239
                 + I HLVA+++  +D   VTVLDS GK+L+    ++    + G      +  + 
Sbjct: 181 LREAEVQGIVHLVASSIEGMDPEQVTVLDSRGKMLSGNTPSDTASKLTGSRQETQRNFEK 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  +   L   +G     + V A  +    +  E  YDP+S   RS + S++     T
Sbjct: 241 TQEEKLQTLLDRVVGSGKCVARVSAAFDFKQVEKYEERYDPESAAVRSEQRSEEK-GGVT 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +       V+ N+   +              K +E  NYE++  +         L ++S+
Sbjct: 300 ATASGVPGVQSNLGRSAPGAPGQTGGG---SKTDETLNYEVSRSTARIIEPVGALSKVSV 356

Query: 360 AVVVNKGR----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           AV+V+         +       Q +    + +I  +V +A G ++ RGD +T+ ++ F E
Sbjct: 357 AVLVDGKYDLPAGAKPGATPKYQPRTPDEMQKIEALVKSAVGFSAERGDQVTVANIPFQE 416

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                    +     I+     T+I  L+  +G L +    +  L +   I+        
Sbjct: 417 TGDTGGEPPKWYDAPIVQ----TLIKNLLIGLGFLALIMFVIRPLLKTLKIERPAS---- 468

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                                   +      D          ++     + + + L+  +
Sbjct: 469 -----------------------SSFLPVQDDAEHAHMIEMQKLAQEKMRMTQIELVEKV 505

Query: 536 EINEERFAKILRKWARSEI 554
           + +  + A+IL+ W   + 
Sbjct: 506 KQDPYQAAQILQNWLTRKE 524


>gi|90422618|ref|YP_530988.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisB18]
 gi|90104632|gb|ABD86669.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisB18]
          Length = 544

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 182/555 (32%), Positives = 305/555 (54%), Gaps = 14/555 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R+ +LA V L          ++++ P ++ LY  L   D+
Sbjct: 1   MVNREYAQKLWSNLLELGPRRLTVLAMVGLAVFFGVGGGAYYLSRPEFNVLYSGLSREDI 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+S  L +AN+ F ++  G +I V      +AR  LA +GLP SS++ GYELFDK+ S 
Sbjct: 61  TRVSAVLRDANVPFDVNATGDTILVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP  GSFR+  A PTASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQAPPTASVVLRTD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
            P+  K+A ++RHLVAAAVP +    VTVLDS G LL A++        +++ + + +  
Sbjct: 180 GPADAKTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGADDDGTGTTPTTMANLQRVVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ N++KAL  +LG+DNF  +V  +L+ D +Q  E VYDP+S+V+RS+R  ++ + S++
Sbjct: 240 LIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETVYDPESRVQRSVRAVRERETSQS 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              ++  TV+QN+P           S +   ++E+ +NYE+++K+  T  D Y + ++ +
Sbjct: 300 LDRQTPTTVQQNLPDQQLNAGGGKNSNDEKQRREDVTNYEVSSKTTTTVSDGYVVNKMFL 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RL   LG    +  +++ +AEI+++ + A G++  RGD I +++++F+E    
Sbjct: 360 AVLVNRPRLIASLGDKVSESAMEAKVAEISQLAATAAGLDRPRGDQIQVSAVEFIEGARD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +    ++F ++L R     ++A+  L    ++ + GL     +              + 
Sbjct: 420 LAPVPGITFTEVLMRQSGNFVSAITILAVAGMLIWFGLRPAINVVLASSKSSEGAPLLAA 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +   + +                          NL   ++         RL  +++++E
Sbjct: 480 EAAALLGADAAVAAQIARE------------AMPNLVQDVSRRAQHAPQKRLEQIVQLDE 527

Query: 540 ERFAKILRKWARSEI 554
           ++ A IL++W R E 
Sbjct: 528 KQAAAILKQWIRQEE 542


>gi|120613031|ref|YP_972709.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1]
 gi|120591495|gb|ABM34935.1| flagellar M-ring protein FliF [Acidovorax citrulli AAC00-1]
          Length = 566

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 127/565 (22%), Positives = 227/565 (40%), Gaps = 42/565 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +  ++L R++ L   + I + +   +AA      P Y  L+  L   D   I   LS  
Sbjct: 21  LQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ ++ S+ G +I VP+  V   R+ LA QGLP   S +G+EL  + N FG+T F + + 
Sbjct: 81  NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERLN 138

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188
             R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++             
Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNI 245
             I HLVA++VP +    V+VLD TGKLL+ +        I  + LS VQ I+ +    I
Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSAIDAQQLSYVQQIEQQYTRRI 258

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS----- 300
              L   +G +N ++ V AE++    +     + P+   + S   S+    S        
Sbjct: 259 LDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQGNQ 318

Query: 301 QPESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            P        N P             +       +      K+E  +NYE++     T  
Sbjct: 319 PPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVTRA 378

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +  ++R+S AVVVN   + +  G++          + ++  +V    G +  RGD++ I
Sbjct: 379 GSGAIKRVSAAVVVNYQAIADAAGKAPQAKAFTPEQIEQMTALVRETIGYSKDRGDSVNI 438

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  FL +             +++    +      + L   L++  L   A++ ++    
Sbjct: 439 MNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQPPA 498

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                  G+ + +             P     L  + + +                    
Sbjct: 499 PAAAPASGRQVDAIEADEPERPALAAPAKPEDLIQTPEQM------------------RL 540

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
                + + N    A IL+ W   E
Sbjct: 541 EEARVLAKENPVAVANILKVWVNGE 565


>gi|170024616|ref|YP_001721121.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII]
 gi|169751150|gb|ACA68668.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII]
          Length = 570

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 127/584 (21%), Positives = 234/584 (40%), Gaps = 59/584 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F ++I   RALEGE++RTI ++  ++  RVH+ MP    F +    PTASV   ++    
Sbjct: 128 FSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNASQLKFTSEVENRY 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   LA  +G  N  + V A+++  +++  +  Y P+    +    S+    SE   
Sbjct: 248 QRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAANQGAVRSQQVSTSEQLG 307

Query: 302 P---ESAVTVEQNMPHVSDRKV-----------------------------PLPRSLENT 329
                       N P V+                                    ++  + 
Sbjct: 308 GTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANAAATANANTTATAAKASSSN 367

Query: 330 DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            + ++ +N+E++     T      ++RLS+AVVVN                    LA++ 
Sbjct: 368 SRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS----DKAGKPIALSKDQLAQVE 423

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +   A G ++ RGDT+ + +  F  +      ++           F  ++NA  +L+  
Sbjct: 424 SLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---QQQSFFDQLLNAGRYLLIL 480

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           L+   L    LR +              + +     + A  T     + +AL   NQ   
Sbjct: 481 LVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAETVKQSKEELALRKKNQQRV 538

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           S              +    R+  + + +    A ++R+W  ++
Sbjct: 539 SA-------------EVQAQRIRELADKDPRVVALVIRQWMSND 569


>gi|238794015|ref|ZP_04637633.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909]
 gi|238726647|gb|EEQ18183.1| Flagellar M-ring protein [Yersinia intermedia ATCC 29909]
          Length = 572

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 126/581 (21%), Positives = 232/581 (39%), Gaps = 61/581 (10%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F  +   L     + L       + + +A   +  SP Y  LY  L   D   I   L++
Sbjct: 15  FTTTLARLRANPKIPLLIAAAAAVAIIVALMLWAKSPDYRVLYSNLNDRDGGDIVTQLTQ 74

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            NI +R +DNG ++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++
Sbjct: 75  LNIPYRFADNGGALLIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQV 132

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKS 187
              RALEGE++RTI ++  ++  RVH+ MP    F +    PTASV   ++         
Sbjct: 133 NYQRALEGELSRTISTLGPVMNVRVHLAMPKPSLFVREQKSPTASVTLALQPGRALDDGQ 192

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNIN 246
             AI ++V+++V  L  G+VTV+D TG+LLT ++     +    L     +++  +  I 
Sbjct: 193 INAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAGRDLNAAQLKFTNEVENRFQRRIE 252

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP---E 303
             LA  +G  N  + V A+++  +++  +  Y P+   ++    S+    SE        
Sbjct: 253 TILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQAADKGAVRSQQVSTSEQLGGTNVG 312

Query: 304 SAVTVEQNMPHVSDRKVPLPRS-------------------------------LENTDKK 332
                  N P  +                                          +  + 
Sbjct: 313 GVPGALSNQPSATPVAPIETPQATPAAGAAGATANNANAANRPATTTAAKSTATSSNSRH 372

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           ++ +N+E++     T      ++RLS+AVVVN G                  LA++  + 
Sbjct: 373 DQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYGS----DKAGKPVALTKDQLAQVESLT 428

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A G ++ RGDT+ + +  F      +  T+           F  ++NA  +L+  L+ 
Sbjct: 429 REAMGFSTDRGDTLNVVNTPFSATDDASGNTLPFW---QQQSFFDQMLNAGRYLLILLVA 485

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             L    +R +         +    SI +    + A        + +AL   NQ   S  
Sbjct: 486 WILWRKLVRPMMAKKQV--ADKAAASINNIVQTAVASENAKQSKEELALRKKNQQRVSA- 542

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                       +    R+  + + +    A ++R+W  ++
Sbjct: 543 ------------EVQAQRIRELADKDPRVVALVIRQWMSND 571


>gi|328545497|ref|YP_004305606.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1]
 gi|326415238|gb|ADZ72301.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1]
          Length = 546

 Score =  349 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 193/553 (34%), Positives = 311/553 (56%), Gaps = 12/553 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   +   +   LG  R++ LA + +  I       ++++ P    LY  L+  DV
Sbjct: 1   MPGREHAEKLLANLLELGTRRLIALALIGVATIATVGLGAYYLSRPQQTTLYTGLQGEDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI  AL +A I + +S +G+++ V      +AR+ LA +GLP   +++GYELFD + S 
Sbjct: 61  SRIGSALQDAGIPYDVSSDGTAVLVNHGAAARARMLLAERGLPR-GADAGYELFDDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGE+ARTIQ + G+ AARVHIV+P+ GSFR+    P+ASV+IR+ 
Sbjct: 120 GLTSFMQEVTRVRALEGELARTIQLMQGVRAARVHIVLPEKGSFRRDQQPPSASVVIRSD 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
            P   ++A+AIRHLV+AAVP +    VTVLD++G LL A +   N     ++ +  A+  
Sbjct: 180 VPDDLRTADAIRHLVSAAVPGMSADKVTVLDTSGGLLAAGKDPANASAGQIASLEAAVSG 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ NI K L  +LG+DNF+ +V A+LN D ++I E +YDP+S+VERS+R  +  + S+ 
Sbjct: 240 RIQENIRKTLTPYLGLDNFQVSVAADLNTDRRRIAETIYDPESRVERSVRTLRQNEMSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S  E+  TV+QN+P  +       RS E   ++EE  NYEI++K+I T+ D Y +ERLSI
Sbjct: 300 SSTETPTTVQQNLPDETVTAENGERSSEENQRREETVNYEISSKTIETSQDGYSVERLSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+V++ RL   LG S D   + + L EI ++V+++ G++SRRGD I ++ +DF+     
Sbjct: 360 AVLVDRARLEASLGGSPDPDTVAAQLVEIEQLVASSAGVSSRRGDVIKVSVVDFVNGGRA 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                 +S  ++L R    +INA   L    L+ + GL     +     +      G+  
Sbjct: 420 MEPVPPMSVSELLIRQSGNLINAFAILTVAGLLIWFGLRPALAVLVPQKSAAPAEIGELA 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           +                       + Q        +   + + +++    +L  +++++E
Sbjct: 480 MMT----------EGEGLAGEFSEARQLAGPDHSGMLQDLTNKLNQSPLKKLESLLDLDE 529

Query: 540 ERFAKILRKWARS 552
           ++ A IL++W   
Sbjct: 530 QQSAAILKQWMYE 542


>gi|296107351|ref|YP_003619051.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649252|gb|ADG25099.1| flagellar M-ring protein FliF [Legionella pneumophila 2300/99
           Alcoy]
          Length = 544

 Score =  349 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 229/574 (39%), Gaps = 57/574 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D          SL   R + +   +   I + +A   +   P Y  LY +L   D 
Sbjct: 1   MALADNASVAATKFASLSIPRQVGVLFGLAASIAIGVAVVLWSRDPSYVPLYSQLNAQDS 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS- 119
           + I   L   +IDF+I  N   + VP+  +  AR+ LAAQGLP   +  G++L       
Sbjct: 61  SEILTILERNSIDFKIDKNNGLLMVPADELQSARLKLAAQGLPRD-TAIGHDLLGSSGGV 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           F  + FM+     +ALE E+ARTI   + I +ARVH+ +P   +F +    P+ASV I  
Sbjct: 120 FNTSQFMENARYRQALEAELARTISKFNNIKSARVHLAIPRESAFVRDSQEPSASVFIDV 179

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQ 235
            +    K  +  AI +LVA+++PNL  G VTV+D  G+LL               L   Q
Sbjct: 180 YSGFEIKKHTIAAIVNLVASSIPNLSAGRVTVVDQDGQLLNEGSGYNLFSETERFLDYRQ 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++H+    I   L   LG    R+ V A+++  + +  + +++P+    RS +  ++++
Sbjct: 240 NLEHQYAQKIQDILTPILGYGRVRAKVSADIDFTSYEQTQELFNPELSALRSEQTMQESR 299

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQSN 337
            +   +         N P  +          +N                    + +   N
Sbjct: 300 NASN-EASGVPGTLSNTPQPNSSLGQKNNPQQNATPNNLPQQTSSDQMQAKDVRMQTTKN 358

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAAT 396
           +E++     T +    ++RLS+AV+V+   +     +    +      + +I  +VS A 
Sbjct: 359 FELDKTISHTKNQPGTIKRLSVAVLVDNRPVMNDKTKKLEKKPLTKEEIEQIKLLVSDAI 418

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G+N +RGD++ + +  F++     +   +  +       F +VI  +   +  L + F  
Sbjct: 419 GLNVKRGDSLNVINSSFVKPDPIEAIPEEHFWQ---KDSFWSVIKQIGGALFILAILFGV 475

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  + +    +                   +  T     +  I+                
Sbjct: 476 LRPMLKTLASNK-----------DMDQATDNQDTGDFTLDGKISFR-------------- 510

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
              +    +     L  +++   +R A++++ W 
Sbjct: 511 ---DVQDYETQLSLLRQVVDKEPKRVAQVVKSWV 541


>gi|284007155|emb|CBA72437.1| flagellar M-ring protein FliF [Arsenophonus nasoniae]
          Length = 554

 Score =  349 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 137/565 (24%), Positives = 236/565 (41%), Gaps = 35/565 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L         +     + L     + I  F+AA F++    Y  +Y  L   D   I 
Sbjct: 10  NPLKGLSTIFDKIKSDPKVPLIVAGALAITFFIAAMFWLQGADYRPVYTNLSDKDGGEIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LS+ NI +++S +GS + VP+  V + R+ LA QGLP    N+G+EL D+   FGL+ 
Sbjct: 70  TQLSQMNIPYQLSADGSMVKVPADQVHEVRLKLAQQGLPK-GGNAGFELLDQE-KFGLSQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F ++I   RALEGE+A+TI+S+  +  ARVH+ +P    F +    PTASV +       
Sbjct: 128 FSEQINYQRALEGELAKTIESLGVVQRARVHLAIPKPSLFVREQKNPTASVTLNLQNGRK 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEI 241
                  AI H+++++V  L   +VT++D  G LLT  +   R++    L+ VQ+I++  
Sbjct: 188 LDEGQIAAIVHMISSSVSGLASSNVTIVDQLGNLLTQPDGISRDLNLTQLNYVQSIENRY 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           +  I   +   +G  N  + V A++N    +     Y P+     S   SK   RSE + 
Sbjct: 248 KQRIESIIMPLVGRGNVHAQVTAQINFARTEETAEEYKPNQPPNESAVRSKQTSRSEQNG 307

Query: 302 P---ESAVTVEQNMPH---------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                       N P           +D+  P P +  +  + +E +NYEI+ +   T H
Sbjct: 308 QLLVGGVPGALSNQPTPAPKAPIDKPNDKNAPQPINNNHNSRVDETTNYEIDRRIRHTQH 367

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               L+RLS+A++VN     +     +     D  L +I  +   A   + +RGD++ + 
Sbjct: 368 QIGNLQRLSVAIIVNYADSDKKENDDSL-PLTDEKLTQIKTLAQEAMEFSEQRGDSLYVV 426

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F                       A V+    +L+  LL   L    ++   +    
Sbjct: 427 NAPFQAQDAELKPLE----FWQQPVFIANVLEIGRYLLLLLLAWLLWRLVVKPQLHKKRQ 482

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +      + L     +       +  D  A               + R+N+ +  Q   
Sbjct: 483 AEKAAKMAAELKVKKDAEQAARQKIEQDEAA----------RQEQTRQRVNAEMHTQ--- 529

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
           RL  M++ +    A ++R W   E+
Sbjct: 530 RLREMVQKDPRVVAMVVRDWMSKEL 554


>gi|213419965|ref|ZP_03353031.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 551

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/563 (21%), Positives = 220/563 (39%), Gaps = 52/563 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T  +   +ERLS+AVVVN   L +              + +I  +   A G + +RG
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRG 427

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT+ + +  F                         ++ A  +L+  ++   L   A+   
Sbjct: 428 DTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQ 483

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 +      ++ +                +       ++D     R    R+ + V
Sbjct: 484 LTRRVEEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEV 531

Query: 524 SKQSDLRLLHMIEINEERFAKIL 546
             Q   R+  M + +    A ++
Sbjct: 532 MSQ---RIREMSDNDPRVVALVI 551


>gi|328542763|ref|YP_004302872.1| flagellar M-ring protein [polymorphum gilvum SL003B-26A1]
 gi|326412509|gb|ADZ69572.1| Flagellar M-ring protein [Polymorphum gilvum SL003B-26A1]
          Length = 538

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 134/549 (24%), Positives = 240/549 (43%), Gaps = 16/549 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    +   +LG TR+  + +V  + I +F    F V +P    LY  L + D + I   
Sbjct: 1   MNGLVEFIRTLGPTRVAAMGAVAAILIGVFAFIIFRVTAPQMTQLYSDLTLEDSSAIVNQ 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I F +  +G++I +P   V + R+ LA +GLP+  S  GYE+FD+ ++ G TSF+
Sbjct: 61  LESLGIPFELKRDGATIMIPKEQVARVRMRLAEEGLPTGGS-IGYEIFDRSDTLGATSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RA+EGE+ARTI+S+  IV+ARVH+V+P+   F++    P+AS+ I+        
Sbjct: 120 QNINHLRAMEGELARTIRSLDRIVSARVHLVIPERQLFQRDRRPPSASIAIKTRGSLGQN 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEM 243
              AI+HLVAAAV  L    V+++D TG+LL   +    E  +          I+  ++ 
Sbjct: 180 EIRAIQHLVAAAVDGLGPERVSIVDDTGRLLATGSDESAEGIVASSLQERTFEIEQRLKN 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + L + +G    R  V AE++ +        +DP+ +V RS +  +++  S + Q  
Sbjct: 240 QIEEILNSVVGPGRARVRVAAEVDFNRITETSEKFDPEGQVVRSTQSKEESSTSISRQAG 299

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             V    N    ++         E ++  EE  N+EI+        +  +++RLS+AV+V
Sbjct: 300 VTVG---NQIPNAEADAGEGGDREGSNLAEEIVNFEISKSVRTEVVEAGRIKRLSVAVLV 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G      +    L  I  +V +A G ++ RGD + + ++ F +    +  +
Sbjct: 357 DGVYSPNESGEVQYAPRTQEVLDRIAVLVRSAVGFDAARGDVVEVVNLRFAQAPEPDFDS 416

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                 +             V L+ +LL+    +  L R     + K  +    +     
Sbjct: 417 ASAGLFEFTRDDVLRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEKAPQELVIAPDGTL 476

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                V       D+  +              +++    +   S  ++  MI+       
Sbjct: 477 VAEVEVPAEAKEEDDEVV---------IEWLEEAKAQGALQASSIAKVGAMIDDYPTEAV 527

Query: 544 KILRKWARS 552
            I+R W   
Sbjct: 528 TIVRGWLEE 536


>gi|167626144|ref|YP_001676438.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4]
 gi|167356166|gb|ABZ78779.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4]
          Length = 572

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/571 (20%), Positives = 210/571 (36%), Gaps = 33/571 (5%)

Query: 5   DQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           D+L    +      R  R     +++ +     +    +     Y  LY   E  + + I
Sbjct: 20  DRLNSLKQKWHQFSRGDRHAATLAILAIVAACVIVLMLWSTGQGYSPLYGNQENVETSHI 79

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I +R+      I VP   VG AR+ LAA+G+  +   SG E  D  ++ G +
Sbjct: 80  IEVLEAEGISYRLDPTSGLILVPEDRVGNARMVLAARGV-KAKVPSGMESLDS-SAIGTS 137

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA--I 180
            FM++     +LEGE++RTI ++  +  ARVH+ +P    F +     P+ASVM+     
Sbjct: 138 QFMEQAKYRYSLEGELSRTIMALKSVKTARVHLAIPKKTLFIRQQPELPSASVMLDLYAG 197

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQA 236
                +   +I +LVA +V  +    V ++D  G  L+    AN+       K L   Q 
Sbjct: 198 QHLQPEQITSIANLVAGSVTGMTPERVQIVDQEGNHLSSEINANQDLTQARDKQLQYTQE 257

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++  +    +  L   LG DNF+  V A +N +  +      DP +      +  +   +
Sbjct: 258 LEQSLINRASSMLQPILGQDNFQVQVAALVNFNQVEETRESLDPQT---VVSQEKQSTNQ 314

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +             N P  +D       S  N    +E   +E+      T +   +LE 
Sbjct: 315 TSGDMALGIPGALSNQPPTADAATNNSTSNLNQ---QESRQFEVGRSVKHTRYQQMQLEN 371

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LSI+V++N     E        G     L +++ +V  A G ++ RGD  +I+S +F   
Sbjct: 372 LSISVLLNNQAAGET-------GWTQPQLDQMSTMVQDAIGYSAARGDQFSISSFNFAPV 424

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
           ++     +     +    +    I      +  L + F  L  L +          +   
Sbjct: 425 KIAEFEPLPWWQGESYQAYLRYFI----GAILGLGMIFFVLRPLVQHLTRTVEHNIKDTL 480

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS------RNLQSRINSYVSKQSDLR 530
            S     P + A T  L  +       +   + + +       NL               
Sbjct: 481 PSTQPLMPPAEAATAHLSQDAAQEAADNLVALNNANINSNWTSNLNLPAPGSPLTVQMEH 540

Query: 531 LLHMIEINEERFAKILRKWARSEIEDRYTQH 561
           L  +      R A+++  W      ++ T  
Sbjct: 541 LSLLANQEPARVAEVISHWISDRDSEQNTHQ 571


>gi|254418232|ref|ZP_05031956.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3]
 gi|196184409|gb|EDX79385.1| flagellar M-ring protein FliF [Brevundimonas sp. BAL3]
          Length = 545

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 139/551 (25%), Positives = 238/551 (43%), Gaps = 12/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +  F  +    G  R+  +  V      + +A    +       LY  L++ +   I+ A
Sbjct: 1   MGGFTAALQKFGIGRLAAVLGVAAGVTAVLVAVMLRMGQAPDALLYSNLDLREAGEITTA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A I +    +GS++ V    VG AR+ +A +GL +S S  GYE+FD  +  G T F 
Sbjct: 61  LQQAGIKYTSKGDGSTVMVNRDDVGTARMLIAGKGLVTSGS-VGYEIFDNQSVLGQTEFQ 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185
           Q++   RAL+GE++RTI S+ GI AARVHI MP    F      PTA+V++         
Sbjct: 120 QQLNEQRALQGELSRTIMSMRGITAARVHITMPRREMFTAAAGDPTAAVLVGLGGRDLTP 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMN 244
               AIR+LVA++VPNL    VTV D   + L A ++        +       + +++  
Sbjct: 180 DQVRAIRNLVASSVPNLKPDRVTVADQNNRTLAAGSDDGTFSSASAAETKGNTEAQLQSR 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +   +G+   R  V A+++      +E  +DPD +V RS   +       T Q + 
Sbjct: 240 IKDIVEGVVGIGAARVQVTADIDQSRSTTQEQKFDPDGQVVRSTTANGSQSSDTTGQNDG 299

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VT   N+P  +        +   + +  E +NYEI+  +  TT +  ++++L++AV V+
Sbjct: 300 GVTAANNIPGGAP--PATTPAGATSAENAETTNYEISNTTTTTTKEPGEVKKLAVAVAVD 357

Query: 365 KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
                   G        +    +A+I  +V+AA GI+  RGD I + ++ F  +     G
Sbjct: 358 GKWTPAADGKGEPTYAPRTAEEIAQIKSLVAAAAGIDEARGDKIEVINVRFNHDTGIAGG 417

Query: 423 TV-QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              + S +D        +I   +  V  LL+ F  L  L +                +  
Sbjct: 418 LEGKSSLLDFSRTDVMRLIELGILAVVALLLIFFVLRPLLKTAGGAAPGAVAAAPAGL-- 475

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P+++  TT +  +    L           +   +RI   V   S  ++   ++ + + 
Sbjct: 476 --PVATVTTTVIGADGQPQLVQLPAPNEMDQKIDIARIEGQVKASSVKKVADFVQAHPDE 533

Query: 542 FAKILRKWARS 552
            A ILR W   
Sbjct: 534 AAGILRNWVAE 544


>gi|326319071|ref|YP_004236743.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323375907|gb|ADX48176.1| flagellar M-ring protein FliF [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 568

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/569 (22%), Positives = 227/569 (39%), Gaps = 44/569 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              +  ++L R++ L   + I + +   +AA      P Y  L+  L   D   I   LS
Sbjct: 19  SVLQRFSALDRSKRLRFGAGIALLVAAVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLS 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
             N+ ++ S+ G +I VP+  V   R+ LA QGLP   S +G+EL  + N FG+T F + 
Sbjct: 79  TMNVPYKYSEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQER 136

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186
           +   R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++           
Sbjct: 137 LNFQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRT 196

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKSLSIVQAIQHEI 241
               I HLVA++VP +    V+VLD TGKLL+ +          I  + LS VQ I+ + 
Sbjct: 197 QLAGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSGSAIDAQQLSYVQQIEQQY 256

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS- 300
              I   L   +G +N ++ V AE++    +     + P+   + S   S+    S    
Sbjct: 257 TRRILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGT 316

Query: 301 ----QPESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
                P        N P             +       +      K+E  +NYE++    
Sbjct: 317 QGNQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVR 376

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGD 404
            T   +  ++R+S AVVVN   + E  G++          + ++  +V    G N  RGD
Sbjct: 377 VTRAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGD 436

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           ++ I +  FL +             +++    +      + L   L++  L   A++ ++
Sbjct: 437 SVNIMNTQFLVDNTPAVELPLWKQPEMIELVRSLGWPVGMSLFAALILLGLVRPAIKGMN 496

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                      G+ + +             P     L  + + +                
Sbjct: 497 QPPAPAAAVASGRQVDAIEADEPERPALAAPTKPEDLIQTPEQM---------------- 540

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
                    + + N    A IL+ W   E
Sbjct: 541 --RLEEARVLAKENPMAVANILKVWVNGE 567


>gi|319403971|emb|CBI77559.1| Flagellar M-ring protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 554

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 202/552 (36%), Positives = 312/552 (56%), Gaps = 11/552 (1%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
            L  L     +   LG  R++ L  V L      + + F++  P Y+ LYV L   DVNR
Sbjct: 5   FLAFLSSSGNALHKLGVKRLIALGMVGLTLFGTILFSSFYLTRPIYEILYVGLSRDDVNR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           + +AL EA I F +S +GS++ VP     +AR+ LA +GLP+S+ N+GYELFD + S GL
Sbjct: 65  MGMALGEAGIAFDVSSDGSTVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMGSLGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           TSFMQEITR RALEGEIARTIQ++ G+ AARVHIV+PD GSFRK   +PTASV+IR  + 
Sbjct: 124 TSFMQEITRQRALEGEIARTIQAVQGLKAARVHIVLPDKGSFRKANQKPTASVVIRTNSG 183

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQHEI 241
              + A++IR LVAAAVP+L+   VTV+D+ G+LL +     N     ++ + Q +  +I
Sbjct: 184 FAVEFAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASMMMASLEQQVASQI 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           + NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S+ ++
Sbjct: 244 DANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADSQNNR 303

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              AV VEQN+P          RS +  D++EE +NYEIN+K+I+T  D Y +++L++A+
Sbjct: 304 NSDAVGVEQNIPQEEIANGGGERSTDKKDRREEITNYEINSKTISTVSDGYSVKKLAVAI 363

Query: 362 VVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VV++ RL    G +   +  ++  +  I ++V+ A G++ +RGD I +T++DF+ N   +
Sbjct: 364 VVDRARLVLPDGTKPTSENALNDEVNRIQQMVATAAGLDPKRGDIINVTAVDFVGNSEAD 423

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              VQ      LSR+ + +IN +  ++   L+ FLG+  L R                  
Sbjct: 424 MAPVQEPLWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENSENAVAG 483

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                +                ++N        +    + + +      RL  MI ++EE
Sbjct: 484 LGNIPALEHQYQDNAEFGGVTGTNN--------DTLHNLRNRMRVPPQNRLEQMIAMDEE 535

Query: 541 RFAKILRKWARS 552
           RFA +LR+W   
Sbjct: 536 RFAGVLREWVHD 547


>gi|311695217|gb|ADP98090.1| flagellar MS-ring protein [marine bacterium HP15]
          Length = 569

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 112/560 (20%), Positives = 224/560 (40%), Gaps = 29/560 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +     F     L   R + L   +   + L +A   +   P+Y  +   L   +   ++
Sbjct: 23  ESRSDLFMGFNRLNLLRQIGLMVGLAASVALGLAVVLWAQEPNYQPVVGDLSSYNPQDVT 82

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    ID+++     ++ VPS  V  AR+ LAA+G+ +     GYEL D+    G + 
Sbjct: 83  TILESNGIDYKMDPRTGALLVPSDQVYNARLKLAAEGV-TDRQTMGYELLDQERGLGTSQ 141

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FM+ I+  R LEGE+ART+ S+ G+  ARVH+ +P+   F +    P+ASV +       
Sbjct: 142 FMETISYRRGLEGELARTVASMRGVRNARVHLAIPERSVFVRDARDPSASVFLEVFAGRR 201

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
              +   AI +LVA +VP +    VTV+D  G LLT  + +               ++  
Sbjct: 202 PEQEQINAIVNLVAGSVPMMSKEHVTVVDQNGNLLTGKQSQSGADQMADQYEYTAKVEER 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   +   +G   +R+ V A+L+  + +  E +++P+ +  RS R   + + +   
Sbjct: 262 LTRRVASLIGPIVGDGRYRAEVSADLDFSSVEQAEELFNPEQQAVRSERELTERRTAGAQ 321

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN--------TDKKEEQSNYEINTKSIATTHDNY 352
                     N P  +          +           + E   NYE++        +  
Sbjct: 322 --GGIPGALANQPPANATVPEQAAGGDGEQAAPAPVNVRSESTRNYEMDRTVSYRRQELG 379

Query: 353 KLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +++R+++A+ V+  ++ +   G  + +   +  L  ++ +V  A G ++ RGD++T+ + 
Sbjct: 380 RVKRVTVALAVDDMKVVDPQTGEVSYEPWPEQELQRLSMLVRDAVGYSAARGDSVTVMNT 439

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F + +                  F  ++  ++  +  L++    L    +  +      
Sbjct: 440 AFAQEESVEFEAPAFWEQP----WFWDLMKQVLAGLVILVLVLGLLRPTLKSLS------ 489

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
              GG          S    G    D+I      +   S   +L     +    +    L
Sbjct: 490 ---GGGQRERGLDSGSGSGGGYGGLDDIEGGDELRKAMSAQDDLLLPGATDGYDRQLNAL 546

Query: 532 LHMIEINEERFAKILRKWAR 551
             +I  +  R A+++R+W  
Sbjct: 547 KGLIAEDPARVAQVMRQWVN 566


>gi|120554914|ref|YP_959265.1| flagellar MS-ring protein [Marinobacter aquaeolei VT8]
 gi|120324763|gb|ABM19078.1| flagellar M-ring protein FliF [Marinobacter aquaeolei VT8]
          Length = 568

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 119/562 (21%), Positives = 229/562 (40%), Gaps = 34/562 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +           L   R + L   +   + L +A   +   P+Y  +   L   +   ++
Sbjct: 23  ESRSNLLLGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDLSAYNPQDVT 82

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    ID+++     ++ VPS  V  AR+ LAA+G+ +     GYEL D+    G + 
Sbjct: 83  TILDSNGIDYKMDPRTGALLVPSEQVYSARLKLAAEGV-TDQKTMGYELLDQERGLGTSQ 141

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS- 183
           FM+ I+  R LEGE+ARTI ++ G+  ARVH+ +P+   F +    PTASV +       
Sbjct: 142 FMETISYRRGLEGELARTIAAMRGVRNARVHLAIPERSVFIRDAREPTASVFLEVFAGRR 201

Query: 184 -VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHE 240
              +   AI +LVA ++P ++   VTV+D  G LLT +E   E + +         ++  
Sbjct: 202 PEPEQIRAIVNLVAGSIPMMNRDQVTVVDQNGNLLTGDEVQAETDRMKDQYEYTSRVEER 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   +   +G   +R+ V A+L+    +  E +Y+P+ +  RS R  + +++    
Sbjct: 262 LTRRVASLIGPIVGEGRYRAEVTADLDFSAVERAEELYNPEQQAVRSER--ELSEQRVAG 319

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN----------TDKKEEQSNYEINTKSIATTHD 350
                     N P  +        +               + E   NYE++     T  +
Sbjct: 320 AQGGIPGALANQPPGAATVPEQATAAPGEDGAPAAPPVNVRSESTRNYELDRTVSYTRQE 379

Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              ++R+++A+ V+  ++ +   G  + Q   ++ L  ++ +V  A G ++ RGD++T+ 
Sbjct: 380 LGAVKRVTVALAVDDMKVVDPETGEVSYQPWPEAELQRLSMLVRDAVGYSASRGDSVTVM 439

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F   +                     V+  LV L+  L +    L  L      +  
Sbjct: 440 NTAFAPEEAVEFEAPGFWEQPWFWDLMKQVLAGLVILILVLGLLRPTLKTLSGGGRRERG 499

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           + GE G    L+      A+   +   D++ L  +                +    +   
Sbjct: 500 EGGEEGEYGGLADIEGGQALRDAMSSQDDLLLPGA----------------TDSYDRQLN 543

Query: 530 RLLHMIEINEERFAKILRKWAR 551
            L  +I  +  R A+++R+W  
Sbjct: 544 ALKGLIAEDPARVAQVMRQWVN 565


>gi|78355400|ref|YP_386849.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217805|gb|ABB37154.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 539

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 127/562 (22%), Positives = 246/562 (43%), Gaps = 36/562 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+   + +     T +  ++ + +  + +V + +F    F++N P Y  LY KL   D N
Sbjct: 3   ALNSAVDKAKTFWTRISMSQRVFIVGLTVVVVGIFFGLIFWINQPDYRVLYSKLTPEDAN 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+   L    + +R+ + GS+I VP+  V   R+ +A +G        G+E+FD++   G
Sbjct: 63  RVVTVLQAQKVRYRLDNGGSTIMVPADRVYDMRLMVAGEGSV-VGQGVGFEIFDQI-KVG 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            T F+Q+I   RAL+GE++RTI     + +ARVH+V+P    F +   +P+ASV+++   
Sbjct: 121 QTDFVQKINYQRALQGELSRTIAEFPAVESARVHLVIPHRSLFIEEQMQPSASVVLKLQD 180

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQA 236
                 K  +A+ +LV  +V  LD G ++V D++GK+L   + E     +    L     
Sbjct: 181 GKKMDEKDVQAVVNLVTMSVEGLDQGKISVADTSGKILYYPKDEQSLDGMTSTQLEHKLT 240

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +Q   E  I + L   +G     + V A+L+   + IR+ ++DP+S V RS   +++A++
Sbjct: 241 MQQNFERRIEELLYPVIGPGKVIAKVNADLDFSQKTIRKKLFDPESSVVRSEIRTEEARK 300

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             ++             +     +    S E+++++   +NYEIN +         +L+R
Sbjct: 301 GTSNVNAGVP-----EANFRGDGMSGGTSTEDSNRETRNTNYEINEEEQNIIAPVGQLDR 355

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           LS+AV+V+         G      + D  +A I ++V++A G +  RGD + ++S+ F  
Sbjct: 356 LSVAVIVDGTYEKNEETGEWTYVPRSDEEVARIRQLVASAVGFDRARGDVLEVSSISFGG 415

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +        +S  +++  +   +   L+  +   L   + +  +         +   V 
Sbjct: 416 PEADTY----MSLAEVIMDYALRLGKPLLNALLVFLFLVMVVRPVVLALIRPKVEGEVVE 471

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L       A+  G                     ++ +              L + 
Sbjct: 472 GLEGLPTGEERLALIEGE-------------------EDMDAMDALKKIDDIKAHALQLS 512

Query: 536 EINEERFAKILRKWARSEIEDR 557
           E N E+   IL+ W +     +
Sbjct: 513 EQNMEQAVGILKSWLKDSEGAK 534


>gi|268316357|ref|YP_003290076.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252]
 gi|262333891|gb|ACY47688.1| flagellar M-ring protein FliF [Rhodothermus marinus DSM 4252]
          Length = 533

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 126/564 (22%), Positives = 220/564 (39%), Gaps = 46/564 (8%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
             Q  +  + L   + L L +V +  I+L +   ++   P Y  L+  L  SD +RI   
Sbjct: 2   FEQLKQFLSRLSPGQRLALGAVTIGSILLLLGIAYWAGRPEYALLFGGLSPSDASRIVET 61

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E N+ +++ + G++I VP   V + R+  A +GL S     GYELFD+    G+T FM
Sbjct: 62  LQEENVPYQLKEGGTAIWVPRDRVYELRLRFAGEGLVSDG-PVGYELFDQNT-LGMTDFM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSV 184
           Q +   RALEGE+ARTI S+  +  A+VH+V+P+   FR+    P+ASV+  +++     
Sbjct: 120 QRLNYKRALEGELARTIMSLQQVELAKVHLVLPERSPFRETQVAPSASVLLSLKSGARLT 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEI 241
            +  + I  LVA AV  LD  +VTVLD+ G LL+  +       +    L + QA++  +
Sbjct: 180 EEQIDGITALVAGAVEGLDPANVTVLDARGNLLSNPDAGNAELALSSTQLKLRQALEAHL 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
                  L   LG  N    V A LN D       + DP+S    S    ++        
Sbjct: 240 TEKGQSMLDRVLGPGNAIVRVSATLNFDQAVTERQLIDPESATVISEERLEE-------- 291

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                                    E +       NYE++        +   +E L+++V
Sbjct: 292 --------------------AGTGGEGSSASSMVRNYELSRTVERIQQNGGDVEYLTVSV 331

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           ++N+       G    +   +  L EI ++V  A G    RGD   I    F        
Sbjct: 332 ILNQRFEEGPDGTPQPRPYTEDELREIEELVKNAVGFRPERGDRFAIHQTRFDTQIDDQI 391

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                             +   + ++   L  +L    +RR+  +    +  +G      
Sbjct: 392 AQELRE--QRRQEQLNLYLRYGLMVLALGLAVWLLRALVRRMGELAGETQVLIGRVDQEH 449

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFS---------HSRNLQSRINSYVSKQSDLRLL 532
               +    +G +    +    S +                + +++            + 
Sbjct: 450 GALGAPEGASGALQGKAVPGLESGESDEELVLIDDIYTSRLSAEAKARLKAKHILFEEVQ 509

Query: 533 HMIEINEERFAKILRKWARSEIED 556
             +    E  A+I+R W  ++++D
Sbjct: 510 KQVNEKPEEAAEIIRSWLVADMQD 533


>gi|261821173|ref|YP_003259279.1| flagellar MS-ring protein [Pectobacterium wasabiae WPP163]
 gi|261605186|gb|ACX87672.1| flagellar M-ring protein FliF [Pectobacterium wasabiae WPP163]
          Length = 569

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 119/581 (20%), Positives = 238/581 (40%), Gaps = 58/581 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  +   D   I   L
Sbjct: 13  NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++NG +I +P++ V + R+ LA  GLP   +  G+EL DK   FG++ F +
Sbjct: 73  TKLNIPYRFAENGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDKE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           +I   RALEGE++RTI+++  +  ARVH+ +P    F +    P++SV +          
Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKSPSSSVTLTLQPGRALDE 190

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               +I ++V+++V  L   +VTV+D TG+LLT        +    L     ++   +  
Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDMNAAQLKYSNEVEAMYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----- 299
           I   +A  +G+ N  + V A+++   ++  +  Y P+   +++   S+   +SE      
Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQKGGPN 310

Query: 300 ------------------------SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--KKE 333
                                   +   +     Q   + +        ++  T   + +
Sbjct: 311 VGGVPGALTNQPAPAPTAPIATPPNNANNQAGAGQQNQNNAGGTQANANAVIQTSNVRND 370

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393
             +NYE++   + T H    ++RLS AV+VN                 +  + +I  +  
Sbjct: 371 ATTNYEVDKTILHTKHSTGGVKRLSAAVIVNYQ---PPGEDGKPVALTEDQIKQIETVAR 427

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
            A G ++ RGDT+ + +  F++N   +S              F  ++ A  +L+  ++  
Sbjct: 428 EAMGFSTERGDTLNVVNTPFMDNTEGSSELP----FWQKQAFFDLLMEAGRWLLVLIVAW 483

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            L    +R      + ++      + L+              ND+  + + +       R
Sbjct: 484 ILWRKLVRPQLRKKELQQEAALAAASLNKG------------NDDDVVVNLSTSEIEQQR 531

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             Q R+++ +      R+  + E +    A ++R+W  +E+
Sbjct: 532 KSQQRVSAEMQS---NRIRELAENDPRVVALVIRQWMSTEL 569


>gi|217976233|ref|YP_002360380.1| flagellar MS-ring protein [Methylocella silvestris BL2]
 gi|217501609|gb|ACK49018.1| flagellar M-ring protein FliF [Methylocella silvestris BL2]
          Length = 546

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 196/553 (35%), Positives = 309/553 (55%), Gaps = 12/553 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M    QL Q + +   LG  R++ LA + +    +   A +F++ P  + LY  L+  DV
Sbjct: 1   MIGQKQLEQIWANLLKLGSRRLIALAMIGVSIFAMTGLAGYFLSRPALETLYAGLDRQDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI  AL EA+I F ++  G++I V      +AR+ LA +GLP +S N+G ELFDK+ S 
Sbjct: 61  SRIGAALKEADIAFDVNAEGNTILVRYGETARARMLLAEKGLP-NSPNAGNELFDKLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT+FMQE+TRVRALEGE+ARTIQ + G+ AARVH+VMPD GSFR+    P+ASV+IR  
Sbjct: 120 GLTTFMQEVTRVRALEGELARTIQLMRGVKAARVHVVMPDEGSFRRTREPPSASVVIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
                 +A++IRHLVA+AVP + M +VTVL++ G LL + N++  +  G  L++ + +  
Sbjct: 180 MADDVGAAKSIRHLVASAVPGMTMEEVTVLNTEGVLLASGNDLADSAPGGMLTLERTVSQ 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI K L  +LG+ NF+ +V   LN D +Q  E +Y+PDS+VERS+++++  Q S+ 
Sbjct: 240 EILDNIRKTLTPYLGLRNFQVSVATRLNTDKKQTNETIYNPDSRVERSVKVTRQNQLSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S  +S  TVE+N+P  + +     +S E + K EE +NYE+++K+IATT   + ++ +S+
Sbjct: 300 STAQSPTTVERNLPQENVKADDGKQSNEESKKSEELTNYEVSSKTIATTSGGFAIDNISV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV++N+  L   LG       +   L E+ +++++A G    RGD I I+++DF++    
Sbjct: 360 AVLINRASLMASLGDRPAPEALGKQLGELEQLIASAAGARKERGDAIKISAVDFIDAGRD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                     ++L R    V+NA+  LV TLL+ + GL    R      A       +  
Sbjct: 420 LEPQPPPPVSELLMRQSGNVLNAVTILVVTLLLIWFGLRPAARAILAAPAPAAVEVAELE 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 ++      +                   NL   + S   +    RL  ++E +E
Sbjct: 480 TLSGEGAAGDANMEIGG----------WGPQGEVNLIEDLTSAPRRSPQKRLEQIVEFDE 529

Query: 540 ERFAKILRKWARS 552
           E+ A IL++W   
Sbjct: 530 EQAAAILKQWMSQ 542


>gi|319405414|emb|CBI79033.1| Flagellar M-ring protein FliF [Bartonella sp. AR 15-3]
          Length = 554

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 203/556 (36%), Positives = 315/556 (56%), Gaps = 15/556 (2%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+ L F      +   LG  R++ L  V L      + + F++  P Y+ LYV L   
Sbjct: 1   MFDKFLAFLSSSGNALYKLGVKRLIALGMVGLTLFGTILFSSFYLTRPVYETLYVGLSRD 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DVNR+ +AL EA I F +S +GS + VP     +AR+ LA +GLP+S+ N+GYELFD + 
Sbjct: 61  DVNRMGMALGEAGIAFDVSSDGSVVQVPVGQAEQARMFLAEKGLPTSN-NAGYELFDNMG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
           S GLTSFMQEITR RALEGEIARTIQ + G+ AARVHIV+PD GSFRK   +PTASV+IR
Sbjct: 120 SLGLTSFMQEITRQRALEGEIARTIQVVQGVKAARVHIVLPDKGSFRKANQKPTASVVIR 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAI 237
             +    +SA++IR LVAAAVP+L+   VTV+D+ G+LL +     N     ++ + Q +
Sbjct: 180 TNSGFAVESAQSIRQLVAAAVPSLEASSVTVMDTRGQLLASGVDAMNGASIMMASLEQQV 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +I+ NI K L  +LG+D+F+++V   L+ D +Q  E V+DP+S+V RS+R  +D   S
Sbjct: 240 ASQIDANIRKQLVPYLGLDHFQTSVQVVLDTDRRQTNETVFDPESQVVRSVRSVRDQADS 299

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           + ++   AV VEQN+P           S +  D++EE +NYEIN+K+I+T  D Y +++L
Sbjct: 300 QNNRNSDAVGVEQNIPQEEIANGGGETSTDKKDRREEITNYEINSKTISTVSDGYSVKKL 359

Query: 358 SIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           ++A+VV++ RL    G +   +  ++  +  I ++V+AA G++ +RGD I +T++DF+ +
Sbjct: 360 AVAIVVDRARLILPDGTKPTSENALNDEVNRIQQMVAAAAGLDPKRGDIINVTAVDFVGH 419

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              +   VQ      LSR+ + +IN +  ++   L+ FLG+  L R              
Sbjct: 420 SEADMAPVQTPIWKSLSRYTSGLINGVALVIAVFLILFLGVRPLMREMREGKKALENNEN 479

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
                    +                ++N        +  + + + +      RL  MI 
Sbjct: 480 TVAGLGNIPALEHQYQANAEFGSVRGTNN--------DTLNNLRNRMRVPPQNRLEQMIA 531

Query: 537 INEERFAKILRKWARS 552
           ++EERFA +LR+W   
Sbjct: 532 MDEERFAGVLREWVND 547


>gi|307546949|ref|YP_003899428.1| flagellar MS-ring protein [Halomonas elongata DSM 2581]
 gi|307218973|emb|CBV44243.1| flagellar MS-ring protein [Halomonas elongata DSM 2581]
          Length = 581

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 125/577 (21%), Positives = 214/577 (37%), Gaps = 43/577 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F +    L  + ++ L       I +  A   + ++P Y  LY  L  +D   I   L 
Sbjct: 18  SFAQLKRQLRGSPLVALLIAGAASIAVVAALMLWASAPQYRVLYSNLSEADGGSIIAELD 77

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
             +I +R S  G ++ VP   V K R+ LA QGLP    N G EL  +  +FG++ F ++
Sbjct: 78  SRSIPYRFSQGGQALMVPGDQVHKLRLQLAEQGLPK-GGNVGLELM-EDQAFGISQFAEQ 135

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY--K 186
           I   R LEGE+AR+++S+  +  ARVH+ +     F +      ASV++      V    
Sbjct: 136 INYQRGLEGELARSMESLGPVAEARVHLALAKDSVFVRRREPAKASVVLTLEPGRVLGKG 195

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMNI 245
              A+ H+V+++VP+L    VTVLD  G+LL+  +     + G  L  V  ++      I
Sbjct: 196 QVNAVAHMVSSSVPDLAAEAVTVLDQNGRLLSRPDGGSLGLDGTQLDYVAEVERAYRQRI 255

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ--PE 303
              L   LG    R+ V A+L+   ++     Y P+     +   S+             
Sbjct: 256 EAILTPILGRGKVRAQVTAQLDFSRREETAERYTPNQPPNEAAVRSRQTSLDLNGDDLAN 315

Query: 304 SAVTVEQNMPH-----------------------VSDRKVPLPRSLENTDKKEEQSNYEI 340
                  N P                         ++         +    +++  NYE+
Sbjct: 316 GVPGALSNTPPGFAESPIATAPEDGEDAAADADQETNDTASQASQAQRRLSRDDVINYEV 375

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           + +     H   ++ERLS AVVV+       +  G        D  LA++ ++V  A G 
Sbjct: 376 DRQVSHVEHQRGRIERLSAAVVVDYRQTPAEQPDGEPTAAPLDDDELAQVKRLVQQALGF 435

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           +  RGD +T+ +  F +     +        ++    F      LV L   LL   L   
Sbjct: 436 SEARGDQVTVVNRPFADESSSQAELAWWQRPELQRLAFGLGRYLLVGLALLLLYLLLLRP 495

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +RR                        S        ++  +  +            + R
Sbjct: 496 LIRRYTERPLPAAVSPTPSIDTRIGDEPSDEDATSGEDEPASHATP-----------RRR 544

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             +   +Q+   L  M + +    A I+R W     +
Sbjct: 545 RKASAYEQNLNDLREMAQEDPRMVAMIVRGWMNKHEQ 581


>gi|292489162|ref|YP_003532049.1| flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|292900280|ref|YP_003539649.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291200128|emb|CBJ47254.1| flagellar M-ring protein [Erwinia amylovora ATCC 49946]
 gi|291554596|emb|CBA22238.1| Flagellar M-ring protein FliF [Erwinia amylovora CFBP1430]
 gi|312173321|emb|CBX81576.1| Flagellar M-ring protein FliF [Erwinia amylovora ATCC BAA-2158]
          Length = 561

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 225/579 (38%), Gaps = 55/579 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       +  SL  +  L+L       I + +A  F+   P Y  L+  +   D   I 
Sbjct: 11  NPADSVKAAMNSLRNSPKLLLPIAAAAAISVMIALMFWAKEPGYRVLFNNISDEDGGAIV 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LS+ N+ +RI   G +I VP + V + R+ +A QGLP   S  G+EL D+   FG++ 
Sbjct: 71  SQLSQMNVPYRIDTAGGAIMVPEAQVHEVRMKMAQQGLPKGGS-VGFELLDQE-KFGISQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F +++   RALEGE+ARTI+++  I  ARVH+ +P    F +   +PTASV +       
Sbjct: 129 FSEQVNFQRALEGELARTIENLGPIQHARVHLAVPKPSMFVRDQKQPTASVNVTLAQGRA 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                  AI HL+++AV  L   +VT++D  G LLT +          +     I+ + +
Sbjct: 189 LDDGQVTAITHLISSAVSGLPAANVTLVDQRGNLLTQSGTGALQTS-QVKYTNEIEADYQ 247

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSET 299
             I + LA  +G  N R+ V A+L+   Q+  +  Y P+++ E+    S+ +    +   
Sbjct: 248 QRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQYQPNAEREKMAIRSRQSSQAAQGNG 307

Query: 300 SQPESAVTVEQNMPHVSD----------------------RKVPLPRSLENTDKKEEQSN 337
                      N P                                 +    ++ +E +N
Sbjct: 308 RGSGGVPGALSNQPPTPATAPLTKPLNAPAANGKNANNEKTPPAGEVAQPYNNRNDETTN 367

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           YE++   I T      ++RLS+AVV+N                  + LA IN +V  A G
Sbjct: 368 YELDRTLIHTKTSVGHIQRLSVAVVINHMAQGAE---GKTGPLPAAELARINTLVKEAIG 424

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            + +RGD++ I +  F    +       +           T+   LV  +       +  
Sbjct: 425 YSEQRGDSVNIVNSPFNG--VVEEVMPPLWQQQSFQTLIMTLARYLVIAIIG---WVMWR 479

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
             ++ +                       + +    +  +   L+   ++  +       
Sbjct: 480 RLVQPVWIRH-----------------QDTTIKRLELEKEARKLELEEKNKAAQMSAHAK 522

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                 ++ +  +L  + E      A ++R+W   E + 
Sbjct: 523 EKRRTDTEINGQQLRELAEQEPRVIALVMRQWLNKEHKS 561


>gi|170769442|ref|ZP_02903895.1| flagellar M-ring protein FliF [Escherichia albertii TW07627]
 gi|170121766|gb|EDS90697.1| flagellar M-ring protein FliF [Escherichia albertii TW07627]
          Length = 552

 Score =  346 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 239/577 (41%), Gaps = 47/577 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALVLWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R+S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRVSETSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ +P    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLALPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G++T++D  G LLT +   ER++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPTGNITLVDQGGHLLTQSNSSERDLNDIQLKYANDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L   +G  N  + V A+L+  +++  E  Y P+    ++   S+   ++
Sbjct: 239 ESRIQQRIEAILTPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGNESQTALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKKEEQSNY 338
           ++S +  P        N P  ++                       S   + ++ E SNY
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISTPPTTQNNRQQQTSTTSNSGPRSTQRNETSNY 358

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T  +   ++RLS+AVVVN   L +              + +I  +   A G 
Sbjct: 359 EVDRTIRHTKMNVGDVQRLSVAVVVNDKTLPDGK----PLPLSTEQMKQIEDLTREAMGF 414

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +RGD++ + +  F  +   +                  +++A  +L+  L+   L   
Sbjct: 415 SEKRGDSLNVVNSPFNSSNESSGELP----FWQQQAFIDQLLSAGRWLLVLLVAWLLWRK 470

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A+R            V  ++                  ++      ++D     R    R
Sbjct: 471 AVRPQLTRRAEAVKTVQQQAQAR------------QEVEDAVEVRLSKDEQLQQRRANQR 518

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +++ V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 519 MSAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 552


>gi|332526951|ref|ZP_08403040.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2]
 gi|332111390|gb|EGJ11373.1| flagellar M-ring protein FliF [Rubrivivax benzoatilyticus JA2]
          Length = 554

 Score =  346 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 114/562 (20%), Positives = 208/562 (37%), Gaps = 42/562 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F    T+L     ++  + +   + + +     +    Y  L+  +   D   I   L++
Sbjct: 19  FVARLTALPMKTKVMAGAGLAALLAIVVVLALSLKQDDYRVLFANVGEKDGGAIVEKLAQ 78

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ +R S+ G +I VP+S V   R+ L+A GLP   S +GYEL DK  +FG T   + I
Sbjct: 79  MNVPYRFSEGGGTIMVPASQVYDLRLKLSAAGLPK-GSITGYELLDKT-AFGQTQGQERI 136

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187
              RALEGE+ RTIQ++S +  ARVH+ +P+   F +   +P+ASV++            
Sbjct: 137 NLQRALEGELTRTIQTLSSVETARVHLALPNQNGFFREQQKPSASVVLTLRPGHTLDRAQ 196

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMNIN 246
              I HLV+++VP L    V+VLD  G LL++ +     +  + L  V+ ++      +N
Sbjct: 197 LAGIVHLVSSSVPELSAKAVSVLDGDGSLLSSQDNASQGLDTQQLQYVREVEATYLRRVN 256

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PE 303
             L   LG DN R+ V AE++    +     + P+     +   +     S       P 
Sbjct: 257 DLLEPVLGRDNLRATVTAEVDFSQTEQTSEEFKPNQGDNPAAVRASRVSESTRPGANVPS 316

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL----------ENTDKKEEQSNYEINTKSIATTHDNYK 353
                  N P V         +               +++ ++ YE++            
Sbjct: 317 GVPGAVSNQPPVPASAPINGPAQALQAANGGAAGGNAQRDAETRYEVDKTVRVIRGATGT 376

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + R++ AVVVN     +  G+          L ++  +V    G +  RGD++ + +  F
Sbjct: 377 VRRINAAVVVNHRNGVDAKGKPTSTPLSQEELDKLTALVEQGIGFSKERGDSVRVVNAPF 436

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
              +   +  V +     +     +       ++  L+V F  +    +           
Sbjct: 437 RVEKAPEAEEVPIWQQPWVLDLLRSGATPAALVLVALIVVFTLIRPAIKAAAAKPEPIKG 496

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                ++                                 +    + +  S         
Sbjct: 497 ETVDELVDGGAALPG------------------------PDQLPALEAPRSNDKLEAARK 532

Query: 534 MIEINEERFAKILRKWARSEIE 555
           +   N    A I+R W   E  
Sbjct: 533 LARENPAAVANIVRGWVSGEAA 554


>gi|170751440|ref|YP_001757700.1| flagellar MS-ring protein [Methylobacterium radiotolerans JCM 2831]
 gi|170657962|gb|ACB27017.1| flagellar M-ring protein FliF [Methylobacterium radiotolerans JCM
           2831]
          Length = 525

 Score =  346 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 132/532 (24%), Positives = 243/532 (45%), Gaps = 10/532 (1%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI 83
           +A+V L  I  F      V+ P    L+  L + D   +   L    I +    + G +I
Sbjct: 1   MAAVTLTLIGFFAFIILRVSRPDMGVLFSDLSMQDSASVVRELDSRGIRYETRGDAGQTI 60

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
             P   + K R+ LA +GLP+     GYE+FDK ++F  T+F+Q +  +RALEGE+AR+I
Sbjct: 61  LAPRPDLAKLRMDLAGKGLPTQGG-VGYEIFDKGDAFSSTNFVQNVNHLRALEGELARSI 119

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLD 203
           ++I  + AARVH+V+P+   F +    P+A+++++ +         AIRHLVA+AV  L 
Sbjct: 120 RAIGRVQAARVHLVLPERRLFERDRESPSAAIVLKLMGDLDAGQVRAIRHLVASAVEGLK 179

Query: 204 MGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
              ++++D  G+LL     +   ++         A++  +   I   +A  +G    R  
Sbjct: 180 PERISIVDERGRLLADGARDAATDVASGFEDRQVALERRLRGQIEDVVAGIVGPGRARVQ 239

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP 321
           V AEL+++  + R   +DP+S+V RS +   ++  +  ++ + +V    N    ++    
Sbjct: 240 VNAELDLNRVESRSETFDPESRVVRSAQTRTESAVTGNAEGQVSVG---NELPGANGGDK 296

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            P   + T+K EE +NYEI+  +     +  +++RLS+AVV++        G+     + 
Sbjct: 297 APTPKDATNKNEETTNYEISRVTKTEIAEGGRIKRLSVAVVLDGVYAAAPDGKQTYSPRT 356

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
            + +  I  +V  A G +  RGD I + ++ F E       T       +L+     V+ 
Sbjct: 357 PAEIERITALVRGAVGFDKARGDQIEVVNLRFAEAPSVPQFTEPTLIESLLAPTKDDVLR 416

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
                V  LL   + L  +R L     A   E    +         A    ++      +
Sbjct: 417 MAELAVLALLTLIVLLTVVRPLVRQVLAPVPEAPALTASGLAIPGDA---AVVAGPGGTV 473

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              ++D  +      ++IN  V  ++  R++ M+  +     ++LR W + E
Sbjct: 474 TVIDRDSPTARLMEFAKINGQVQAETVQRVVDMVRASPSETVEVLRTWIQEE 525


>gi|109947514|ref|YP_664742.1| flagellar MS-ring protein [Helicobacter acinonychis str. Sheeba]
 gi|109714735|emb|CAJ99743.1| flagellar basal-body M-ring protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 567

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 118/572 (20%), Positives = 231/572 (40%), Gaps = 26/572 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L ++ ++   L +    +           Y  L+  
Sbjct: 1   MDLKILLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDPSDNALILQYLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q +  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DSKD-FGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ L   +     + +  +
Sbjct: 178 VMLKLKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKDQ--EKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F       ++ T     M    +   +    + +L+  +++       +    
Sbjct: 416 VAVSNFEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           +    ++   ++   +  A + +   + EI  
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISS 562


>gi|294664059|ref|ZP_06729461.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606162|gb|EFF49411.1| flagellar protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 572

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/530 (20%), Positives = 208/530 (39%), Gaps = 24/530 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S     +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312

Query: 301 QPESAVTVEQNMPHV--------------SDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            P+       N P                +        +      K    NYE++     
Sbjct: 313 GPQGPPGATSNSPGQPPAPAVAGAPGTPAAANGQAAAPATPTESSKSATRNYELDRTLQH 372

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           T     +++R+S+AV+++        G+  +Q    + L  I  +V  A G ++ RGDT+
Sbjct: 373 TRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTV 432

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           ++ +  F+   +      +      +       +  LV  V  L + F  +    R    
Sbjct: 433 SVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVGAVVVLALLFGVVRPTLRQLTG 488

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
             A K + G       P  +         +    L+     I    +   
Sbjct: 489 VTAVKDKQGKAGKDGTPQSADVRMVDEDDDLMPRLEEDTAQIGQDKKTPD 538


>gi|254517007|ref|ZP_05129065.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3]
 gi|219674512|gb|EED30880.1| flagellar M-ring protein FliF [gamma proteobacterium NOR5-3]
          Length = 566

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 127/563 (22%), Positives = 218/563 (38%), Gaps = 30/563 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F   +    TR L L   +   I + M    +V  P+Y  LY  +   D N +  +L   
Sbjct: 13  FNGFSRQPATRQLALLIGLAASIAMAMGMVQWVVEPNYKPLYGTMAPEDTNDVIASLEAN 72

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            +D+R+      ++VP+  V +AR+ LA  G P      G+E   +    GL+SFM++  
Sbjct: 73  GVDYRMDRRSGMVAVPAGDVHRARLLLAGDGYPR-GEGVGFESLYREQEIGLSSFMEQAR 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALE E+ARTI ++  +  ARVH+ M    +F +   +P ASVM+             
Sbjct: 132 FHRALESELARTIGALESVRGARVHLAMAKQSAFLRQREQPAASVMLNLYAGRTLNERQL 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNIN 246
             I HLVA++VPNLD   V+V+D  GKLL+    + E           + ++ E+   I 
Sbjct: 192 SGIVHLVASSVPNLDSEQVSVVDQQGKLLSGQGTDEEFGFTQDQFRYSRQLESELSGRIV 251

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   LG +  R+ V A+L+    +     Y P++   R        + S         
Sbjct: 252 DILEPILGANAVRAQVAADLDFTRVERTLETYAPET---RVRSEQTSEETSNRLYAGGVP 308

Query: 307 TVEQNMPHVS----------------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
               N P +                 D              +    NYE++         
Sbjct: 309 GTLSNEPPIDTTVATVQAAPNVDANIDANAQAGAIPPARTSRRSTINYEMDKTISHVRET 368

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              L++LSIAVV++    T   G ++        + E+  +V  A G ++ RGDT+++ S
Sbjct: 369 PGALQKLSIAVVLDYIETTADDGTTSRVPMPQERIDEVTSLVREAVGFDADRGDTVSVIS 428

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F+E        ++ S ++        +   L+ L   L + F+ +  L +   +    
Sbjct: 429 ASFVEVPAIEDSVIESSLLE--QDWIWQLAKGLLVLTVLLALVFVVVRPLVKFAAVPVPM 486

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                G +        +A+  G M +D + L    Q     +            +     
Sbjct: 487 MQSPQGLAGPGQQQPVAALGGGGMADDQVTLGGQGQMGLPGTAGAGGGGYQQQLQ----M 542

Query: 531 LLHMIEINEERFAKILRKWARSE 553
              +     +R A+++R W   +
Sbjct: 543 ARSVAAGEPDRAAQVVRGWVSDD 565


>gi|300899195|ref|ZP_07117471.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
 gi|300357176|gb|EFJ73046.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
          Length = 511

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/535 (23%), Positives = 224/535 (41%), Gaps = 47/535 (8%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 2   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 61

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP   
Sbjct: 62  PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 119

Query: 163 SFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
            F +    P+ASV +              AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 120 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 179

Query: 221 E-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
               R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 180 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 239

Query: 280 PDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV---------------- 320
           P+     +   S+   ++++S +  P        N P  ++                   
Sbjct: 240 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQAS 299

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +          
Sbjct: 300 TTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPL 355

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            +  + +I  +   A G + +RGD++ + +  F  +                      ++
Sbjct: 356 SNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLM 411

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
            A  +L+  L+   L   A+R            V  ++                  ++  
Sbjct: 412 AAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAV 459

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 460 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 511


>gi|255021373|ref|ZP_05293421.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
 gi|254969236|gb|EET26750.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
          Length = 568

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/568 (22%), Positives = 220/568 (38%), Gaps = 42/568 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           Q+ +    L   R   + +V+       +    +     Y  LY  L   D   +   L 
Sbjct: 19  QWQRRWQELPGNRRFAILAVLAAIFAGIVVTLLWSRPQGYGVLYTNLSNRDGGEVIAQLQ 78

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           + N+ FRI+D G+ ISVP++ V   R+ LAA GLP      G+E+ D     G + F++ 
Sbjct: 79  KLNVPFRITDGGAVISVPANEVYATRMKLAAVGLPR-GEGVGFEILDHEP-MGTSDFVEH 136

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186
           +   RALEG + RTI S+S +  A+VH+ +P    F     +PTASV++           
Sbjct: 137 VNYQRALEGSLERTIASLSAVERAKVHLAIPKPSVFLSQEEKPTASVLVSLYPGRELSAA 196

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQAIQHEIEMNI 245
               I HLVAA+VP L   +VTV+D  G LL+A       +    L+  +A+    E  I
Sbjct: 197 QVAGIVHLVAASVPGLTDKNVTVVDQQGNLLSAQGGNDLGLQPGQLAYQRAVDRAYEHRI 256

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + LA  +G    R AV A+++    +   + Y      +   +       +    P   
Sbjct: 257 EQILAPIVGAGGVRVAVSADIDFSHSESSSVTY---GNHQILSQQQNVRSSTGGGGPYGV 313

Query: 306 VTVEQNMPHVSDRKVPLPRS-------------------LENTDKKEEQSNYEINTKSIA 346
                N P           +                          +  +N++++   + 
Sbjct: 314 PGALSNQPPGVAIAPLTAPTVSTLSPGDLIALAPTLKALAPTESSSDSTTNFDVDQTIVH 373

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGDT 405
           T +    ++RLS+AV+VN       LG +        + L +I ++V  A G +++RGDT
Sbjct: 374 TVNPVGSVKRLSVAVLVNDRLEGTGLGGAKQAKPLTAAQLQQIQQLVEDAIGYDAKRGDT 433

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + +M F   +  +S        +         +  LV L+  +L+ F  +  L R+  
Sbjct: 434 VKVVNMPFSGTEAVSSHLP-WWQQEWFLALLHGTLRYLVLLLLAILLYFGLIRPLLRIRG 492

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
             +                 S A   G      +A D       +    +    N   + 
Sbjct: 493 RREPTLAA-----------DSVARDGGQGEAGEVAADRGQPGPTTAREPVSMPANPLETD 541

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
                   ++  +  R A+++++W  SE
Sbjct: 542 LYV--ARQLVMQDPGRAAQVVKEWLSSE 567


>gi|94987299|ref|YP_595232.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Lawsonia intracellularis PHE/MN1-00]
 gi|94731548|emb|CAJ54911.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 554

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 130/556 (23%), Positives = 242/556 (43%), Gaps = 18/556 (3%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I   + +  +   +   T+ L +    +   ++F+   F++N   Y  LY  L   D N 
Sbjct: 5   ISQIIARITEFWNNSNLTQKLFIGGSAVFVTLIFIGLMFWINRTDYKVLYSNLGPEDANH 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    + ++++DNG +I VP+S V   RI +A +G     S  G+E+FD VN  G 
Sbjct: 65  IIKTLQADKVSYQLADNGKTILVPASSVYDLRIKIAGEGG-MVGSGIGFEIFDAVN-VGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q I   RAL+GE++RTI     + +ARVH+V+P    F +   +P+ASV+++  NP
Sbjct: 123 TDFVQRINYQRALQGELSRTISEFPNVESARVHLVIPQRSLFIEEQQKPSASVVLKLKNP 182

Query: 183 ---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAI 237
                 K  + + +++  AV  LD   V++ DS GK L     +               +
Sbjct: 183 SRKMDQKEVQGMVNMLVMAVEGLDKEHVSITDSLGKPLYFPNEDNLAGLSVTQREYKLKV 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +E  I++ L   +G     + V  +L+ + + IR  +YDP+S V RS + S++  R 
Sbjct: 243 EQGLERRIDELLIPLMGQGKVIAKVNVDLDFNQKTIRREIYDPNSSVIRSEQRSEETNRG 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           +++    +  V     +          S +   ++   +NYEIN +      +  ++ R+
Sbjct: 303 QSNLESGSPDV-----NFRGDGPNGAMSTQEGTRETRTTNYEINREEQNIVGEVGQINRM 357

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AVVV+   + E  G      +    L  I  +VS A G +  RGDTI ++S+ F E  
Sbjct: 358 TVAVVVDGTYVKEPNGEYKFVPRSQEELNRIRLLVSHAIGFDRARGDTIEVSSIPFDEAD 417

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L           ++++++   +   L+  +   L   L +  +         +   +   
Sbjct: 418 LPIEPPAA----EVIAKYAERLGKPLLNALLAFLFLMLVVRPVILALIRPKVESEAI--V 471

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             L   P +          +  A  ++ + +   S   +   +    +      L + E 
Sbjct: 472 EGLEGLPSAEEQLALYETQEEAAKAAAMEAVRIASEEEEEFESLKHLEDIKNYTLQLAEN 531

Query: 538 NEERFAKILRKWARSE 553
           N E+   +LR W + +
Sbjct: 532 NIEQSILVLRGWMKDD 547


>gi|324018846|gb|EGB88065.1| flagellar M-ring protein FliF [Escherichia coli MS 117-3]
          Length = 512

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 126/535 (23%), Positives = 223/535 (41%), Gaps = 47/535 (8%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 3   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPAEKVHELRLRLAQQGL 62

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI +I  +  ARVH+ MP   
Sbjct: 63  PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPS 120

Query: 163 SFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
            F +    P+ASV +              AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 121 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 180

Query: 221 E-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
               R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 181 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 240

Query: 280 PDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV---------------- 320
           P+     +   S+   ++++S +  P        N P  ++                   
Sbjct: 241 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQAS 300

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +          
Sbjct: 301 TTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPL 356

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            +  + +I  +   A G + +RGD++ + +  F  +                      ++
Sbjct: 357 SNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLL 412

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
            A  +L+  L+   L   A+R            V  ++                  ++  
Sbjct: 413 AAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAV 460

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 461 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 512


>gi|297538194|ref|YP_003673963.1| flagellar M-ring protein FliF [Methylotenera sp. 301]
 gi|297257541|gb|ADI29386.1| flagellar M-ring protein FliF [Methylotenera sp. 301]
          Length = 551

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 220/571 (38%), Gaps = 45/571 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+++Q +    +G +      LIL       + + +    +   P Y  L+      D  
Sbjct: 8   ALINQGVNKGGTGLNSQLGNKLILVVAAAAVVAVMVVFWLWSQQPDYRVLFSNYTDKDGG 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + N+ ++ SD+G++I VP+S V +AR+ LA+ GLP    N G+E+  +   FG
Sbjct: 68  AIVAELEKMNVPYKFSDSGTAILVPASQVHQARLKLASDGLPK-GGNIGFEIL-ENQKFG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ F++++   RALEGE+ R+IQSI  +  AR+H+ +P    F +    PTASV++    
Sbjct: 126 VSQFVEQVNFQRALEGELERSIQSIGAVETARIHLAIPKASVFVRDQQSPTASVLLNLRA 185

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSIVQA 236
                     A+ HLVA++VPNL   +VTV+D  G LL+         N+    L  +  
Sbjct: 186 GRSLDAQQVGAVVHLVASSVPNLPAANVTVVDQNGNLLSDTSKKMGANNLDPTQLKYIDD 245

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ- 295
           IQ  I   +   +   +G  N R+   AE++  + +    +Y P+ K + +   S  +  
Sbjct: 246 IQQSIIKRVESIITPIVGAKNVRAEASAEIDFSSLEQAAEIYKPNQKPDDAAIRSLQSNE 305

Query: 296 --RSETSQPESAVTVEQNMPHVSDRKV----------PLPRSLENTDKKEEQSNYEINTK 343
              S             N P  +                  +    ++K   +N+E++  
Sbjct: 306 SLTSNGGAATGVPGALSNQPPPNATAPITTPAGAAPGATAEAAPVNNQKNTTTNFEVDKT 365

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              +      ++RL++AVVVN   + +  G+   +    +   +IN +   A G N  RG
Sbjct: 366 VRYSQQGMGGIKRLNVAVVVNNMPVVDKKGKVTYRPLTAAEKTQINDLAMQAMGFNKERG 425

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D +T+ +  F          V +        +    +  +V +V  LL+    L  + R 
Sbjct: 426 DALTVVNSSFAGEPEEIIPEVPMWKNPETIEYGKDALRFIVGIVVLLLIYKRALSPMLRK 485

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 K     G          +     L                              
Sbjct: 486 LTAPSPKLLNAPGDEDAVVNLSGAEGQAQLAAVAG------------------------- 520

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           S  +      + + N    A ++  W     
Sbjct: 521 SNSNLAAAKQLAKDNPRMVASVVANWTSGNE 551


>gi|329298594|ref|ZP_08255930.1| flagellar MS-ring protein [Plautia stali symbiont]
          Length = 573

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 122/548 (22%), Positives = 220/548 (40%), Gaps = 57/548 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I   L++ NI ++ ++NG ++ VP+    +  + LA QG
Sbjct: 48  WAKAPDYRVLYNNLSDEDGGAIVTQLTQMNIPYQFAENGGALMVPADKEHELSLRLAQQG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL DK   FG++ F ++I   RALEGE+ARTI+++  + +ARVH+ MP  
Sbjct: 108 LPKGGS-VGFELMDKE-KFGISQFSEQINYQRALEGELARTIETLGPVKSARVHLAMPKP 165

Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV   ++          +AI+H+V+++V  L +G+VTV+D  G+LLT 
Sbjct: 166 TLFVREQKSPSASVTLNLQPGRALDKGQIQAIQHMVSSSVAGLPLGNVTVVDQAGRLLTR 225

Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           ++ E   +    L     ++   +  I   L   L   N  + V A++N D  +  +  Y
Sbjct: 226 SDSEGRDLNDAQLKYASEVEARYQQRIEAILNPILDQGNVHAQVTAQINFDRSEQTDEKY 285

Query: 279 DPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV--------------- 320
            P++    +   S     +  +    P        N P  ++                  
Sbjct: 286 QPNANPNNTAIRSHQTSTNVQNGSPYPGGVPGALSNQPAPANTAPVTNPQQQNNNTANGQ 345

Query: 321 --------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                             S  ++  + +  NYE++     T  +   ++RLS+AVVVN  
Sbjct: 346 QNNNNAQNAGTSTSTAQSSGPSSSSRNDTVNYELDRTIRHTKLNVGDVQRLSVAVVVNYR 405

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                  +       D  + +I  +   A G +  RGD++ + +  F   +         
Sbjct: 406 ----DDRKGKAVVLNDQQIKQIEDLTREAMGYSQTRGDSVNVVNSQFNTTEPTGGDLP-- 459

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                    F  ++ A  +L+  L+   L    +R         +      +        
Sbjct: 460 --FWQQQSFFEQLMTAGRWLLVALVAFILYRKMVRPQLLRKREAEKAAAEAAAARAAARE 517

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                 +           N+D     R   +R+++ V  Q   R+  M E +    A ++
Sbjct: 518 EEAAYSVQ---------INKDELDKERKSNNRMSAEVMSQ---RIRDMSENDPRVVALVI 565

Query: 547 RKWARSEI 554
           R+W  +E+
Sbjct: 566 REWMSNEL 573


>gi|261344120|ref|ZP_05971764.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541]
 gi|282567712|gb|EFB73247.1| flagellar M-ring protein FliF [Providencia rustigianii DSM 4541]
          Length = 564

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 121/534 (22%), Positives = 234/534 (43%), Gaps = 41/534 (7%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  G
Sbjct: 47  WFRSPDYRVLLSNLSAKDGGDIVGQLTQMNVPYQIADNGSAILVPADKVHELRLKLAQSG 106

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP    N+G+EL DK   FG++ F ++I   RALEGE++RTI+S+S + +ARVH+ +P  
Sbjct: 107 LPK-GGNTGFELLDKEQ-FGISQFSEQINYQRALEGELSRTIESLSPVQSARVHLAIPKP 164

Query: 162 GSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PTASV +              AI H+V+++V  L   +V ++D TG+LLT 
Sbjct: 165 TLFVREQKLPTASVTVGLLPGRVLDEGQISAIVHMVSSSVTGLTAANVIIVDQTGRLLTN 224

Query: 220 NEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           N+  +       + + + ++  ++  I   L+  +G  N  + V A+++    +     Y
Sbjct: 225 NDNSQQSANSAQIKMTKEMETHLKERIEDILSPLVGRANIHAQVTAQMDFSKVEQTSEEY 284

Query: 279 DPDSKVERSIRLSKDAQRS---ETSQPESAVTVEQNMPHVSDRKVPLPRSLE-------- 327
            P+   + +   S+    S       P        N P  +        + +        
Sbjct: 285 KPNQTPDAAAIRSRQNSESMQNSNGGPGGVPGALSNQPVSAPSAPIEAENKDNTGKNNQN 344

Query: 328 --------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                      +++E +NYE++ K   T      ++RLS+AV+VN        G    + 
Sbjct: 345 TTTTRNGTLNSQRDETTNYEVDRKISHTQRQIGVVDRLSVAVIVNYQAQEGEKG-VEMKP 403

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
                + +I+ +   A G +++RGD++ IT+  F  +      T  +       +  +  
Sbjct: 404 LPPEMIKQIDALTREAMGYSTQRGDSLNITNSLFTSDAPAIEETSLL----NSPQFVSQA 459

Query: 440 INALVFLVGTLLVTFLGLHALRR-LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           ++    ++  ++  F+    ++        A++ +   ++ ++    +  V    +  D 
Sbjct: 460 LDYGKIILIAIIAWFMWRFGIKPQWVKYRKAQQAQADAETFIATQSTTPFVVEEEINED- 518

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                   D  +  R  + R+++ +  Q   R+  M E + +  A ++R+W   
Sbjct: 519 -------MDEKTRRRLTRQRVSAEIQSQ---RIREMAEKDPQVVAMVIRQWLGK 562


>gi|46578729|ref|YP_009537.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448141|gb|AAS94796.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232601|gb|ADP85455.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris RCH1]
          Length = 538

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 118/551 (21%), Positives = 228/551 (41%), Gaps = 37/551 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +  ++ + +  + LV + +F     ++N P Y  LY  L   D NR+   L    +
Sbjct: 15  FWSRISMSQRVFIVGLALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKV 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +++ ++G ++ VP+  +   RI +A +G        G+E+FD +   G T F+Q+I   
Sbjct: 75  PYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTDFVQKINYQ 132

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190
           RAL+GE+ RTI    G+  ARVH+V+P    F +   +P+ASV+++         +  +A
Sbjct: 133 RALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQA 192

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNINK 247
           I +LV  AV  +D   V+V D++GK+L     + ++       L     +Q  +E  I +
Sbjct: 193 IVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEE 252

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   +G     + V A+++   + IR  +YDP+  V RS + S+++ R   +    A  
Sbjct: 253 LLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRANLEAGAPD 312

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                 +     +    S +   ++   +N+EIN +      +   L RLS+AV+V+   
Sbjct: 313 A-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTY 367

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
                G      +    +  I ++VS+A G +  RGDT+ + S+ F    L    ++   
Sbjct: 368 EKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQL 427

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           F+D                          L   + L N        +     +    I  
Sbjct: 428 FLDY------------------------ALRLGKPLLNALLVFLFLLLVVRPVVMALIRP 463

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS-YVSKQSDLRLLHMIEINEERFAKIL 546
            V   ++           +            +++    +      + + E N ++   I+
Sbjct: 464 KVEGEMIEGLEGLPAGEERLALIEGDEEVDALDALRKIEDIKAHAMQLAEQNMDQAVGII 523

Query: 547 RKWARSEIEDR 557
           R W +++   +
Sbjct: 524 RSWLKNDEGTK 534


>gi|77918796|ref|YP_356611.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380]
 gi|77544879|gb|ABA88441.1| flagellar M-ring protein FliF [Pelobacter carbinolicus DSM 2380]
          Length = 519

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 132/561 (23%), Positives = 227/561 (40%), Gaps = 50/561 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA         ++     R R L L +V+L  ++ F A  F  N   Y  L+  L+ +D 
Sbjct: 1   MAEETSPKNLIETIRQWPRKRQLSLLAVVLACVVFFAAIIFQANKADYQMLFGNLDSADA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L E  + +R+   G +I +P+  V + R+ +A  GLP      G+E+FDK  SF
Sbjct: 61  AAVVDRLKEQKVPYRLEHGGRAIFIPADKVYEIRLAMAGSGLPRGGG-VGFEIFDK-QSF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179
           G+T F Q+I  +RAL+GE++RTI S++ + AARVH+ +P+   FR    + +ASV+++  
Sbjct: 119 GMTDFAQKINYLRALQGELSRTIASLAPVEAARVHLALPEKRLFRDQQQKASASVIVKLA 178

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQ 235
                       I +LVA +V  LD+  V V+D  G++L+               L   Q
Sbjct: 179 TGQSLRETQILGIVNLVAGSVDGLDVDQVAVIDDNGRVLSQTADHSGTGGTAPDMLEYQQ 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++  +E+     L   LG+ N    V A ++   ++  E  YDP+    RS + S  ++
Sbjct: 239 NLEQRLELRAQALLDRALGMGNSMVQVTAAIDYTQRERMEESYDPNQTAVRSEQSS--SE 296

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           +   +       V+ N+ +          S   T +  E  NYEI+            ++
Sbjct: 297 KGGVANAGGVPGVQTNIKNEKA-----GNSFIPTSRSNETINYEISKVVSKQVDSVGSIK 351

Query: 356 RLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            LS+AV+V    +    +     + Q +    LA I K++S A G+N  RGD I + S  
Sbjct: 352 NLSVAVLVADRPVDNQGDTDKAPSYQPRDPKELAAIEKMISRALGLNPDRGDQIAVISRP 411

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F     FNS  +  S           +I   +  +   L  F  +  L ++         
Sbjct: 412 FET--AFNSEPLVKSSPWSRIYQMVPMIKYALLALTAGLFYFFVIRPLLQILR------- 462

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
              G  +     +    +      D  A       + S   +                  
Sbjct: 463 -GDGPMVEHYKTVEQLESEMAGLPDGSAAQEPPLSLPSGQPSE----------------- 504

Query: 533 HMIEINEERFAKILRKWARSE 553
              + +    A+I++ W +  
Sbjct: 505 ---QKDP---AQIIKAWLKDN 519


>gi|149377888|ref|ZP_01895617.1| flagellar M-ring protein FliF [Marinobacter algicola DG893]
 gi|149357830|gb|EDM46323.1| flagellar M-ring protein FliF [Marinobacter algicola DG893]
          Length = 565

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 113/563 (20%), Positives = 229/563 (40%), Gaps = 39/563 (6%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +           L   R + L   +   + L +A   +   P+Y  +   +   +   ++
Sbjct: 23  ESRSDLIFGFNRLNLLRQVGLMVGLAASVALGVAVVLWAQEPNYQPVVGDMSGYNPQDVT 82

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L   +ID+R+     ++ VPS  V  AR+ LAA+G+ +     GYEL D+    G + 
Sbjct: 83  TILDANSIDYRMDPRTGALLVPSDEVYNARLKLAAEGV-TDEQTMGYELLDQDRGLGTSQ 141

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINP 182
           FM+ I+  R LEGE+ARTI S+  + AARVH+ +P+   F +    PTASV +   A   
Sbjct: 142 FMETISFRRGLEGELARTIGSMRTVRAARVHLAIPERSVFVRDARTPTASVFLEVIAGRR 201

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHE 240
              +   +I +LVA ++P +   +VTV+D +G LLT  E   +   +         ++  
Sbjct: 202 LEQEQIASIVNLVAGSIPEMSKDNVTVVDQSGNLLTGREDGGDSQQIEDQYDYTSRVEDR 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   +   +G   FR+ V A+L+  + +  E +++P+ +  RS R  + ++R    
Sbjct: 262 LARRVASMVRPVVGDGRFRAEVTADLDFSSVEQAEELFNPEQQAVRSER--QMSERRAGG 319

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN--------TDKKEEQSNYEINTKSIATTHDNY 352
                     N P           + +           ++E   NYE++        +  
Sbjct: 320 GASGIPGALSNQPPAQPTVPEQATADDEGNVQAPPVNVREESTRNYEMDRTVSYIRQELG 379

Query: 353 KLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +++RLS+A+ V+  ++ +   G  + +   +  L  +  +V  A G ++ RGD++T+ + 
Sbjct: 380 RIKRLSVALAVDDMKVVDPQTGEVSYEPWPEQELQRLTMLVRDAVGYSAARGDSVTVMNT 439

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN---IDD 468
            F   +                  F  ++  ++  +  L++    L    +  +     +
Sbjct: 440 AFAAEEQIEFEAPAFWEQP----WFWDLMKQVLAGLVILVLVLGLLRPTLKSLSGGGRSE 495

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            +     G   L       A+   +   D++ L  +                +    +  
Sbjct: 496 RRGDSDDGYGGLDGIEGGDALREAMHSQDDLLLPGA----------------TDSYDRQL 539

Query: 529 LRLLHMIEINEERFAKILRKWAR 551
             L  +I  +  R ++++R+W  
Sbjct: 540 NALKGLIAEDPARVSQVMRQWVN 562


>gi|291288216|ref|YP_003505032.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809]
 gi|290885376|gb|ADD69076.1| flagellar M-ring protein FliF [Denitrovibrio acetiphilus DSM 12809]
          Length = 555

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 123/564 (21%), Positives = 238/564 (42%), Gaps = 19/564 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA+ D   QF  +   L   + + +A+ +    +      ++ N P Y  L+  +   D 
Sbjct: 1   MALSDIASQFKDTYLKLSLLQKISVAAALAAVFISVAVIVYWANRPVYKTLFAGMTQDDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +  +L E  I +++ D G+ I++P   V + R++LA + +P     +G ELFDK +SF
Sbjct: 61  ALVVDSLKEQRIPYKLEDGGAKITIPDQYVYETRLNLAKENIPRGGG-AGLELFDK-SSF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179
           G+T FMQ ++  RAL+GE+ARTI ++  I  ARVH+ +     F        A+V++R  
Sbjct: 119 GMTEFMQNVSYQRALQGELARTITALKEIQEARVHLTVSKDRLFIADEEASKAAVVLRLR 178

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIV 234
                     +AI  LV+ AV  L   +V ++D+ G+LL+    E      +    L   
Sbjct: 179 SGASLGRAEVQAIASLVSGAVKGLSPENVQIVDTQGRLLSEFLDEENSPLMMTQSQLEYT 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + I+ ++E  +N+ L A LG  N  + V AE++ + + + +     D+ V RS +  + +
Sbjct: 239 KKIERDLERKVNEILGATLGKGNAVAKVTAEIDFNKRDVTKEE-YGDTPVLRSQQSMEIS 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             ++   P+    V+ N+       +      +  +K E+  N+EIN            +
Sbjct: 298 STNKPDGPQGIPGVQSNLAEPD---IGTAGRNQEYNKTEDTQNFEINKTITVEQKAYGTI 354

Query: 355 ERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           +R+++AVVV+  ++ +           Q + D  +  I  +V+ A G N  RGD I +T+
Sbjct: 355 DRVTVAVVVDDRKIRQQDDNGESTIVSQRRSDDEMRSIRNLVAMAVGYNEPRGDQIEVTN 414

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F      +         +        V   L+  +  LL  FL +  + +  +     
Sbjct: 415 ISFDTTSKDHE--YDTLKREKTMELVGMVSKYLLAALIVLLFYFLVIRRILKRLDKPVTV 472

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             +           +   +T           +   +       +    +++  SK    +
Sbjct: 473 HEDGSITYGQIDGEMGIDITLDDSYP-KTLEELEREIESELEESSPMDVDTVKSKVMLKK 531

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
           +      + +  A +L+   R + 
Sbjct: 532 IEEFATEDPDAMASLLKTLMRGDN 555


>gi|259907606|ref|YP_002647962.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|224963228|emb|CAX54712.1| Flagellar basal-body M-ring protein [Erwinia pyrifoliae Ep1/96]
 gi|283477448|emb|CAY73364.1| Flagellar M-ring protein FliF [Erwinia pyrifoliae DSM 12163]
          Length = 561

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 118/545 (21%), Positives = 214/545 (39%), Gaps = 55/545 (10%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
             F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP + V + R+ +A
Sbjct: 45  LMFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMA 104

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
            QGLP   S  G+EL D+   FG++ F +++   RALEGE+ARTI+++  I  ARVH+ +
Sbjct: 105 QQGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAV 162

Query: 159 PDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +   +PTASV +              AI HL+++AV  L   +VT++D  G L
Sbjct: 163 PKPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAANVTLVDQRGNL 222

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           LT +     +    +     I+ + +  I + LA  +G  N R+ V A+L+   Q+  + 
Sbjct: 223 LTQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDE 281

Query: 277 VYDPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSD---------------- 317
            Y P+++ E+    S+ +    +              N P                    
Sbjct: 282 QYQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGK 341

Query: 318 ------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
                        +    ++ +E +NYE++   I T      ++RLS+AVV+N       
Sbjct: 342 NANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQGAE 401

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
                      + LA IN +V  A G + +RGD+I I +  F               +  
Sbjct: 402 ---GKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPP-----LWQ 453

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
                  ++    +LV  ++   +    ++ +                       + +  
Sbjct: 454 QHSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRH-----------------QDTTIKR 496

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
             +  +   L    ++  +             ++ +  +L  + E      A ++R+W  
Sbjct: 497 LELEKEARKLALDEKNNAAEMTAHAKAKRRTDTEINGQQLRELAEQEPRVIALVMRQWLN 556

Query: 552 SEIED 556
            E + 
Sbjct: 557 KEHKS 561


>gi|242278626|ref|YP_002990755.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638]
 gi|242121520|gb|ACS79216.1| flagellar M-ring protein FliF [Desulfovibrio salexigens DSM 2638]
          Length = 534

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 127/560 (22%), Positives = 241/560 (43%), Gaps = 37/560 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I++ L +F    +    ++ +++  +    ++ F+   F++N   Y  LY KL   D +R
Sbjct: 5   IVEYLGKFQTFWSDRTVSQRIMIGGLAATVVIAFILMVFWLNQTEYRVLYTKLYAEDASR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L      ++I DNGS+I VP+  V   R+ +A +G        GYE+FD+V   G 
Sbjct: 65  VVSILQSTKEPYKIQDNGSTILVPADKVYDLRLKIAGEG-ALHGQGIGYEIFDEVQ-IGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180
           T F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +    P+ASV+++    
Sbjct: 123 TDFIQRINYQRALQGELARTISEFPQVERARVHLVLPAKSLFIEEQVDPSASVVLKLKDG 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIVQA 236
                K  + + +LV  +V  L    VT+ D  G++L   E +     NI    L     
Sbjct: 183 EKLADKQIKGVLNLVVMSVEGLKPEHVTITDMRGQVLYQPEDDGGLGLNITNSQLEYKSG 242

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +IE  I + L   +G D   + V A+L+   + I+   YDPD +V RS + S++  R
Sbjct: 243 LESKIEQRIQRLLMPIVGPDKVIAKVNADLDFRQRTIKTEAYDPDGQVARSEQTSEETTR 302

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
              +             +          + +++ ++   +NYEIN +         +L+R
Sbjct: 303 GTANVDGGVP-----EANFRGDGFTGTATTQDSARETRTTNYEINKEEQQIIVPVGELKR 357

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           LS+AV+V+         G      + +  +  I ++VS+A G +  RGD + +++M F  
Sbjct: 358 LSVAVIVDGTYTKNPDTGEMTYVPRSEEEMQRIRELVSSAVGYDEVRGDIVEVSNMSFGM 417

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +F    +  + ++   R     +N L+  +  +    L +  +          + E+ 
Sbjct: 418 QDMFGDEGLMRTMLEYAQRLGKPFLNGLLIFLFLI----LVVRPVIMALIKPRVAEEEID 473

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             + L       A+    +  + +                     +   + +  + L + 
Sbjct: 474 EVAGLPEAGERLAIDESDLDEEALD-------------------TARRLENAKAQALQLS 514

Query: 536 EINEERFAKILRKWARSEIE 555
           E N ++  ++L+ W + E  
Sbjct: 515 EKNMDQAVQVLKSWLKQEAA 534


>gi|315286666|gb|EFU46099.1| flagellar M-ring protein FliF [Escherichia coli MS 110-3]
          Length = 510

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 126/535 (23%), Positives = 224/535 (41%), Gaps = 47/535 (8%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
            N P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGL
Sbjct: 1   ANPPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL 60

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P   +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP   
Sbjct: 61  PKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS 118

Query: 163 SFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
            F +    P+ASV +              AI HLV++AV  L  G+VT++D  G LLT +
Sbjct: 119 LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQS 178

Query: 221 E-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
               R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y 
Sbjct: 179 NTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYR 238

Query: 280 PDSKVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV---------------- 320
           P+     +   S+   ++++S +  P        N P  ++                   
Sbjct: 239 PNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQAS 298

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +          
Sbjct: 299 TTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPL 354

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
            +  + +I  +   A G + +RGD++ + +  F  +                      ++
Sbjct: 355 SNEQMKQIEALTREAMGFSEKRGDSLNVVNSPFNSSDESGGALP----FWQQQVFIDQLL 410

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
            A  +L+  L+   L   A+R            V  ++                  ++  
Sbjct: 411 AAGRWLLVLLVAWLLWRKAVRPQLTRRAEAVKTVQQQAQARE------------EVEDAV 458

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 459 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 510


>gi|257095338|ref|YP_003168979.1| flagellar MS-ring protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047862|gb|ACV37050.1| flagellar M-ring protein FliF [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 578

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 118/583 (20%), Positives = 222/583 (38%), Gaps = 64/583 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + L +  ++   L   + ++L   +   + L +AA   +    +  L+  +   D   I 
Sbjct: 16  NPLDRAREALARLTNRQKVLLIVSVAAVVTLLIAAATLLRQGEFKVLFSNIGERDGGAII 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL + N+ ++ S++GS+I V  S V   R+ LAAQGLP   +  G+EL  +   FG++ 
Sbjct: 76  AALEQMNVPYKFSESGSAILVHDSRVHDVRLRLAAQGLPRGGA-VGFELM-EAQKFGVSQ 133

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           F +++   R LEGE++RTIQSI+ + AARVH+ +P    F +   +P+ASV++       
Sbjct: 134 FAEQVNYQRGLEGELSRTIQSIAAVQAARVHLAIPKPSVFMREELKPSASVLLNLYPGRS 193

Query: 185 YK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQH 239
            +      I++LVAA+VP L    VT+LD +G LL+  +    E  +    +  +Q ++ 
Sbjct: 194 LEPRQIAGIQNLVAASVPQLAPTSVTLLDQSGALLSQMKSKLLEAGLDPTQVKYIQEVEA 253

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR--S 297
            +   +   LA  +G  N R  + A+++    +     + P++        S+ +    S
Sbjct: 254 SVIKRVEDILAPIVGPGNARVQIAADIDFSQSEQTAETHRPNATPPEISIRSQQSSETAS 313

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPR-------------------------------SL 326
            +   +       N P V                                          
Sbjct: 314 TSPAAQGVPGALSNQPPVPATAPLTQPPVPGAGGAAPATPPVPGQINVAGVQAPVASVGP 373

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLA 386
             +  K    NYE++            ++RLS AVVVN+ +     G++ ++   D+ + 
Sbjct: 374 PISTSKNSTVNYEVDKTIRHVRQAVGTIKRLSAAVVVNQRKEVAKDGKAVNKPLPDAEVK 433

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           +I+ +V  A G N  RGDTI++ +  F    +     +              ++   V  
Sbjct: 434 QISDLVKEAMGFNKERGDTISVANAPF--TVIDKDEGLPPWRDPETVSLTKDLVKYGVIA 491

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
                +    +  L +      A      G  I                     L     
Sbjct: 492 AIIAYLLLGVVRPLLKTMLEKPATTESGVGGRIDVVAGEEGEEEATENLPTAAEL----- 546

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
                             ++       + + + +  A I+++W
Sbjct: 547 -----------------LEKRIAAARALAQQDPQLVANIIKEW 572


>gi|167736645|ref|ZP_02409419.1| flagellar MS-ring protein [Burkholderia pseudomallei 14]
          Length = 465

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 116/444 (26%), Positives = 196/444 (44%), Gaps = 15/444 (3%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +     L       + I   +A   +  +P Y  LY  L   D   I  AL +AN+
Sbjct: 24  GLSRMKTNPRLPFLIGAALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIIAALQQANV 83

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            ++ +D G +I VP++ V + R+ LAA GLP   S  G+EL D    FG++ F +++   
Sbjct: 84  PYKFADAGGAILVPANQVHETRLKLAAMGLPKGGS-VGFELMDN-QKFGISQFAEQVNYQ 141

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEA 190
           RALEGE+ RT++SI+ + AARVH+ +P    F +    P+ASV++              A
Sbjct: 142 RALEGELQRTVESINAVRAARVHLAIPKPSVFVRDREAPSASVLVDLYPGRVLDEGQVLA 201

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
           +  +V+++VP++   +VT++D  G LLT       +    L  VQ I+   +  I+  LA
Sbjct: 202 VTRMVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQKRIDAILA 261

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---TSQPESAVT 307
              G  N RS V A+++    +     Y P+   ++S   S+    S     S       
Sbjct: 262 PIFGAGNARSQVSADVDFSKIEQTSESYGPNGTPQQSAIRSQQTSSSTELAQSGASGVPG 321

Query: 308 VEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              N P             +   P +   +D+K+  +NYE++            ++RLS+
Sbjct: 322 ALSNTPPQPASAPIVASNGQPAGPAATPVSDRKDSTTNYELDKTVRHVEQSMGTIKRLSV 381

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + +  F      
Sbjct: 382 AVVVNYQPSTDAKGRVTMQPLAADKLAQVQQLVKDAMGYDEKRGDSVNVVNSAFSAAADP 441

Query: 420 NSGTVQVSFMDILSRHFATVINAL 443
            +        D++           
Sbjct: 442 FANLPWWRQPDMIELGKDIAKWLG 465


>gi|310764888|gb|ADP09838.1| Flagellar basal-body M-ring protein [Erwinia sp. Ejp617]
          Length = 561

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 119/544 (21%), Positives = 216/544 (39%), Gaps = 55/544 (10%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP + V + R+ +A 
Sbjct: 46  MFWAKEPGYRVLFNNVSDEDGGAIVSQLSQMNVPYRIDTPGGAIMVPEAQVHEVRMKMAQ 105

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   S  G+EL D+   FG++ F +++   RALEGE+ARTI+++  I  ARVH+ +P
Sbjct: 106 QGLPKGGS-VGFELLDQE-KFGISQFSEQVNFQRALEGELARTIENLGPIQHARVHLAVP 163

Query: 160 DMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +PTASV +              AI HL+++AV  L  G+VT++D  G LL
Sbjct: 164 KPSMFVRDQKQPTASVNVTLAQGRTLDDGQVTAITHLISSAVSGLPAGNVTLVDQRGNLL 223

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T +     +    +     I+ + +  I + LA  +G  N R+ V A+L+   Q+  +  
Sbjct: 224 TQSGTGA-LQSSQVKYTNEIEADYQQRIQRLLAPLVGDSNVRTQVTAQLDFTQQERTDEQ 282

Query: 278 YDPDSKVERSIRLSKDAQ---RSETSQPESAVTVEQNMPHVSD----------------- 317
           Y P+++ E+    S+ +    +              N P                     
Sbjct: 283 YQPNAEREKMAIRSRQSSQAAQGNGRGAGGVPGALSNQPPTPATAPLTKPLNAPAANGKN 342

Query: 318 -----RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                       +    ++ +E +NYE++   I T      ++RLS+AVV+N        
Sbjct: 343 ANNEKTPAAGEVAQPYNNRNDETTNYELDRTLIHTKTSVGHIQRLSVAVVINHMAQGAE- 401

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                     + LA IN +V  A G + +RGD+I I +  F               +   
Sbjct: 402 --GKPGPLPAAELARINTLVKEAIGYSEQRGDSINIVNSPFNGVAEEVMPP-----LWQQ 454

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
                 ++    +LV  ++   +    ++ +                       + +   
Sbjct: 455 HSFQTLMMTLARYLVIAIIGWVMWRRLVQPVWIRH-----------------QDTTIKRL 497

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +  +   L+   ++  +             ++ +  +L  + E      A ++R+W   
Sbjct: 498 ELEKEARKLELDEKNNAAEMTAHAKAKRRTDTEINGQQLRELAEQEPRVIALVMRQWLNK 557

Query: 553 EIED 556
           E + 
Sbjct: 558 EHKS 561


>gi|332531123|ref|ZP_08407037.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624]
 gi|332039408|gb|EGI75820.1| flagellar M-ring protein FliF [Hylemonella gracilis ATCC 19624]
          Length = 570

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 111/581 (19%), Positives = 220/581 (37%), Gaps = 66/581 (11%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             +   +L R + + LA  +++ + + + A    +   +  L+  L   D   I   L++
Sbjct: 9   LSQRFAALERGQKMRLALGVVLVVAVLLGALLMNHKTDWRVLFSGLSDKDGGAIIAQLTQ 68

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + ++ ++ G +I VP+  V   R+ LA+QGLP   S +G+EL  + + FG T F + +
Sbjct: 69  MQVPYQYTEGGGAILVPADKVHDTRLRLASQGLPK-GSVTGFELM-ENSRFGATQFQERV 126

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187
              R LEGE+ R+IQ++S + +ARVH+ +P    F +   +P+ASV++            
Sbjct: 127 NFQRGLEGELTRSIQALSSVQSARVHLALPQQNGFFREQQKPSASVLLTLYPGRILDRAQ 186

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEM 243
              I HLV+++VP +    V+++D TGKLL+ +         +  + L  VQ I+ +   
Sbjct: 187 IAGIVHLVSSSVPEMKPEAVSIVDDTGKLLSQSPDGAAGQDGVDTQQLKYVQQIEAQYRQ 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I   L   +G  N ++ V A+++    +     + P+   +     S+    S    P 
Sbjct: 247 RILDILEPVVGKGNVQAQVTADVDFSQSEQTSETHTPNQAPDTGAVRSQQTLESTNPGPA 306

Query: 304 SA---VTVEQNMPHVSDRKV-------------------------PLPRSLENTDKKEEQ 335
                     N P   +                                +   + +KE  
Sbjct: 307 GPSGIPGAVSNQPPGPNSAPINAAAQALAPGVPQAQAQAQGRAGQTAQAAAPVSTRKESV 366

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            NYE++            ++RLS AVVVN+    +  G  A        + ++  +V  +
Sbjct: 367 INYEVDKTVRVVRAARGAIKRLSAAVVVNQRTQADARGNVAPVPLTQQQVDQMTALVRES 426

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G N  RGD++ + +  F+ +   +           +      +   +  ++  L+V F 
Sbjct: 427 IGFNGDRGDSVNLMNAPFVVDAKADESL-AFWQQPAVQELARDLAWPVGAVLLALVVLFG 485

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            +  + +        +                             LD+   +        
Sbjct: 486 VVRPVLKAMQAPPPPQ-----------------------------LDALLDEDLELGLQD 516

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
             +    + ++       +   N    A I++ W  S  +D
Sbjct: 517 PIKKGPRIQERQLEEARKLARENPAAVAGIVKNWIGSNKDD 557


>gi|208434294|ref|YP_002265960.1| flagellar basal-body M-ring protein [Helicobacter pylori G27]
 gi|208432223|gb|ACI27094.1| flagellar basal-body M-ring protein [Helicobacter pylori G27]
          Length = 567

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDPSDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGTSKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|160896087|ref|YP_001561669.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1]
 gi|160361671|gb|ABX33284.1| flagellar M-ring protein FliF [Delftia acidovorans SPH-1]
          Length = 566

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 116/575 (20%), Positives = 228/575 (39%), Gaps = 61/575 (10%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             +  T++ R   L   ++ ++ ++   AA  F   P Y  L+  L   D   I   LS+
Sbjct: 20  LQQRWTAMDRGARLRWGAIAVLLVVALGAAAMFYRQPDYKVLFSNLSDKDGGAIVAQLSQ 79

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ +R ++ G +I +PS  V   R+ LA QGLP   S +G+EL  + + FG+T F + +
Sbjct: 80  MNVPYRYTEGGGAILIPSDRVHDVRLKLATQGLPK-GSVTGFELM-ENSKFGITQFQERL 137

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187
              R LEGE+ R+IQ+++ + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 138 NFQRGLEGELTRSIQALAAVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRVLDRTQ 197

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNI 245
              I HLVA++VP +    V++LD +GKLL+ +          + L+  Q I+ +    I
Sbjct: 198 IAGIVHLVASSVPEMAPTAVSILDDSGKLLSQSPDGNANAVDMQQLNYTQQIEQQYVRRI 257

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----SQ 301
            + L   +G +N ++ V AE++    +     + P+   +  +  S+    S       Q
Sbjct: 258 LEILEPVVGKNNVKAQVSAEMDFSQTESTSEQHRPNQSSDAGVVRSQQVVESTGEQKPPQ 317

Query: 302 PESAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           P        N P  +            +      +  +  K+E  +NYE++     T   
Sbjct: 318 PTGIPGATSNQPPQNASAPVNGANPAPQAADGQNAARSASKRESITNYEVDKTVRHTRGS 377

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS------------YLAEINKIVSAATGI 398
              ++RL+ AVV+N   +      +A      +              A++  +V    G 
Sbjct: 378 TGSIKRLTAAVVINAPLVAAPAPAAAGAATDAATVAAAARGLTAAQQAQLLTLVRETVGY 437

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           ++ RGD++ + S  F+++++     V +     +     ++   +   +   ++    + 
Sbjct: 438 SAERGDSVNLVSTPFVQDEVP--ADVPLWRQPEVLDMARSLGVPIGLALFGAILLLGLVR 495

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            + +              +      P  +A    L P                       
Sbjct: 496 PMLKGRKTVAVGGQLNAIEGEQLDRPALAAPAVDLSPTQE-------------------- 535

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                 +    +   + + N    A I++ W   E
Sbjct: 536 ------QVRLEQARQLAKQNPIAVANIVKTWINGE 564


>gi|94264093|ref|ZP_01287892.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
 gi|93455509|gb|EAT05699.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
          Length = 530

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 126/559 (22%), Positives = 231/559 (41%), Gaps = 41/559 (7%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            +   Q      +L   + +    V+ +     +A            L+  L   D   +
Sbjct: 5   REIFTQVVSIFNNLSMIQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAEV 64

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E NI +R+SD G++I VPS+ V + R+ LA +GLP      G+E+FD+V   G T
Sbjct: 65  VERLREMNIPYRLSDTGNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGTT 122

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-- 181
            F+  +   RAL+GE+ARTI+    I  ARVHI  P    F +     TASV +R     
Sbjct: 123 DFVNRLNLQRALQGELARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGRD 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQH 239
                  ++I +LV+ AVP L    +T++D+ G+LL     ++   + G  L   Q I+ 
Sbjct: 183 QLSQHQIQSIVNLVSTAVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIEE 242

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                +   L   +GV+  R++V A+++ +   + E ++DP+ +V RS ++  +A +   
Sbjct: 243 SARRKVESMLEEVVGVNRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-RG 301

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +Q       +  +   +D       S  +  + +   NYEI+ ++  T      ++RLS+
Sbjct: 302 NQARGIPGAKGELATFADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLSV 359

Query: 360 AVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           AV+V+                 + + +  +    +++S A G N  RGD + + SM F  
Sbjct: 360 AVMVDGTYERVTDEEGRTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFAL 419

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
           + +       +     +++  A     LV+L+    V    +    RL    D +     
Sbjct: 420 SAITEPEEDPMDRWREMAQWLAM---PLVYLLIAFGVMLFVVRPFLRLLAAKDLEAKRAS 476

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
            ++ +      +     L        D                           R+  + 
Sbjct: 477 QRATVGRAEGEAEDEDDLSMGPRGLSDQ-------------------------ERIYRLA 511

Query: 536 EINEERFAKILRKWARSEI 554
           + + +R A ++R+W R E+
Sbjct: 512 QSDPDRAADLVRRWLREEV 530


>gi|300994277|ref|ZP_07180829.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1]
 gi|300304942|gb|EFJ59462.1| flagellar M-ring protein FliF [Escherichia coli MS 200-1]
          Length = 508

 Score =  343 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 125/532 (23%), Positives = 223/532 (41%), Gaps = 47/532 (8%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGLP  
Sbjct: 2   PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 61

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F 
Sbjct: 62  GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 119

Query: 166 KIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-M 222
           +    P+ASV +              AI HLV++AV  L  G+VT++D  G LLT +   
Sbjct: 120 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTS 179

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
            R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+ 
Sbjct: 180 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVSAQLDFASKEQTEEQYRPNG 239

Query: 283 KVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLP 323
               +   S+   ++++S +  P        N P  ++                      
Sbjct: 240 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPTNQNNRQQQASTTS 299

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
            S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +           + 
Sbjct: 300 NSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNE 355

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            + +I  +   A G + +RGD++ + +  F  +                      ++ A 
Sbjct: 356 QMKQIEALTREAMGFSEKRGDSLNVVNSPFNSSDESGGALP----FWQQQAFIDQLLAAG 411

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            +L+  L+   L   A+R            V  ++                  ++     
Sbjct: 412 RWLLVLLVAWLLWRKAVRPQLTRRAEAVKTVQQQAQARE------------EVEDAVEVR 459

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 460 LSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 508


>gi|332702978|ref|ZP_08423066.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553127|gb|EGJ50171.1| flagellar M-ring protein FliF [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 533

 Score =  343 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 126/560 (22%), Positives = 245/560 (43%), Gaps = 38/560 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L +     +     + +++  +    +++F+    ++N P Y  LY  L   D  R
Sbjct: 5   LQDSLNKLTAFWSDRSMAQRVMIGGLAASLVVIFLLLIVWLNQPDYKILYSNLPPEDAGR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L +  ID+++ D+G ++ VPS  V + R+ +A +GL    +  G+ELFD+V   G 
Sbjct: 65  VAEQLKKQKIDYKLEDSGKTVLVPSDQVYQLRLDMAGEGL-LHGTGLGFELFDEV-KIGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180
           T F+Q I   RAL+GE++RTI     +  ARVHIVMP    F +  + PTAS++++    
Sbjct: 123 TDFVQRINYQRALQGELSRTITEFPEVERARVHIVMPHKSLFIEEQSPPTASIILKLAEG 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237
                K  EAI +LV+ +V  LD   +TV D  GKLL   + + +   +    L     +
Sbjct: 183 RELNQKQIEAIVNLVSLSVEGLDKSQITVADVAGKLLFQADSDDSVKGLTLGQLEYRTTL 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           Q  +E  I + L   +GV    + V A+++   + I + +YDP S V RS + +++  + 
Sbjct: 243 QRNLEQRIEQLLTPVVGVGKVIARVNADVDFSQKTITKDIYDPSSAVVRSEQRTEEQTKG 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +            P+          S ++++++   +N+EIN +  +      +++RL
Sbjct: 303 RANIEGGEP-----DPNFRGDGFNGSLSSQDSNRETRTTNFEINKEQQSIVVPVGEIDRL 357

Query: 358 SIAVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           S+AV+V+          G      +    +  I ++V    G +  RGD I ++++ F E
Sbjct: 358 SVAVIVDGTWQAPAEGEGEPVWVPRSQEEIQRITELVRNTVGFSQSRGDAIEVSNISFGE 417

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +F   ++  + ++ + R    ++N L+  +  L    L +  +            E+ 
Sbjct: 418 PDMFGEPSLMQTMLEYMQRLGKPILNGLLIFLFLL----LIVRPVVLSLIKPKVAAEEIE 473

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               L       A+  G+                           +   + +  + L + 
Sbjct: 474 ELISLPEADERLALEEGVQDEVLDL--------------------NRRLELAKAQALQLA 513

Query: 536 EINEERFAKILRKWARSEIE 555
           E + ++   +L+ W + E  
Sbjct: 514 EKDMDQAVAVLKTWLKQEAA 533


>gi|317052367|ref|YP_004113483.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5]
 gi|316947451|gb|ADU66927.1| flagellar M-ring protein FliF [Desulfurispirillum indicum S5]
          Length = 558

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 132/564 (23%), Positives = 239/564 (42%), Gaps = 27/564 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV---NSPHYDNLYVKLEVS 58
           +  + + Q  +    L RT+ + LA VI   ++  +    +    + P    L+  L + 
Sbjct: 4   SFKELISQLSRVLQKLSRTQQITLALVIGASVITIITLIIWAVVASRPGNQVLFSNLAME 63

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   ++  L+E  + + I ++G +I VP ++V + R++LA QGLP   S  G+E+FD   
Sbjct: 64  DAGEVAAKLAELRVPYEIHNDGRTILVPGNVVHETRLNLAQQGLPR-GSGVGFEIFDSA- 121

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
             G+T F+Q++   RAL+GE+ RTI +I GI +ARVHI +P+   F        ASV +R
Sbjct: 122 GIGMTEFIQKVNFRRALQGELGRTISAIDGIESARVHIALPERSLFISQDRGAEASVALR 181

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLS 232
                       + I HLV+++V  L    VTV+D  G++L         E  +    L 
Sbjct: 182 LSPHTRLSGDQVKGIIHLVSSSVEGLTPEGVTVVDEQGRILNDLIQERSEESTLSVTQLM 241

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
             + ++  +++ ++  L + LG  N  S V  EL+ D  + +   YDP   V RS +  +
Sbjct: 242 YQRNMERNLQIALDNLLVSVLGQGNSYSNVSLELDFDKVEQQIEAYDPA-NVPRSEQRIE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           + ++   +Q      V  N+    D   P    +    ++ E +NYE+       T    
Sbjct: 301 EREQGREAQ-GGIPGVRANIADQDD---PEAGLMTTRSREVETTNYEVGRTLTQITRSRG 356

Query: 353 KLERLSIAVVVNKGRLTEVLG---RSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +++RL++AV VN   + +      +   Q +    L +I  +V +A G N  RGD + +T
Sbjct: 357 QIKRLTVAVAVNGNYVQQQADGVSQVVYQPRSSEELDKITALVQSAIGYNEGRGDRVVVT 416

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++ F E             +  +   +  ++  L   +  L      +  + +       
Sbjct: 417 NLQFGEPPKSR-----WQELMEMQDLWKEMLKYLGIALFFLFAFIFIIRPIVKWVTDMTR 471

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            + E+              V T L              I S S    S +     K    
Sbjct: 472 DEDELKKTFGTGQKKPKQLVPTQLPKTLAELEAEMESQIDSESSVSASAVRG---KVIRK 528

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           +L  +++ N    A+++R W   +
Sbjct: 529 KLSDIVQENPAGAAQLIRIWINDD 552


>gi|183598654|ref|ZP_02960147.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827]
 gi|188020839|gb|EDU58879.1| hypothetical protein PROSTU_02060 [Providencia stuartii ATCC 25827]
          Length = 562

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 116/530 (21%), Positives = 222/530 (41%), Gaps = 35/530 (6%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           ++ SP Y  L   L   D   I   L++ N+ ++I+DNGS+I VP+  V + R+ LA  G
Sbjct: 47  WLRSPDYRVLLSNLSAKDGGDIVSQLTQMNVPYQIADNGSAILVPAEKVHELRLKLAQSG 106

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP    N+G+EL DK   FG++ F +++   RALEGE++RTI+S+S +  ARVH+ +P  
Sbjct: 107 LPK-GGNTGFELLDKEQ-FGISQFSEQVNYQRALEGELSRTIESLSPVQNARVHLAIPKP 164

Query: 162 GSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    PTASV +              AI H+V+++V  L   +VT++D TG+LLT 
Sbjct: 165 TLFVREQKLPTASVTVGLLPGRMLDEGQITAIVHMVSSSVSGLTAANVTIVDQTGRLLTN 224

Query: 220 NEMERNILGK-SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           N+  +       + + + ++  ++  I   ++  +G  N  + V A+++    +     Y
Sbjct: 225 NDNSQQSANNAQIKMTKEMESHLKQRIEDIISPLVGRANVHAQVTAQMDFSKVEQTSEEY 284

Query: 279 DPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMPHVSDRKVPLPRSLENT------ 329
            P+     +   S+   +S  +             N P  +        +          
Sbjct: 285 KPNQTPNSAAVRSRQNSQSSQNNTSGVGGVPGALSNQPPSAPSAPISTDNKGANSAQNSP 344

Query: 330 -------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                   + +E +NYE++ K   T      ++RLS+AV++N        G    +    
Sbjct: 345 SNNGSSLSQSDETTNYEVDRKISHTQRQIGVIDRLSVAVIINYLPQDGEDGTQQMKPLSP 404

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             + +I  +   A G +S RGD+++IT+  F  + +       +     +++        
Sbjct: 405 EMMQQIESLTREAMGYSSTRGDSLSITNSLFTNDTVVEEQPSMLENPQFIAQVLDYGKII 464

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
           L+ ++  L+  F       +      A+       +     P+          ++     
Sbjct: 465 LIAIIAWLMWRFGVKPQWVKYRQTQQAQSAAEVFVAAQPKTPLVVDEEINEDMDEQTRRR 524

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            + Q + +  ++               R+  M E + +  A ++R+W   
Sbjct: 525 LTRQRVSAEIQS--------------QRIREMAEKDPQVVAMVIRQWLGK 560


>gi|302383920|ref|YP_003819743.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194548|gb|ADL02120.1| flagellar M-ring protein FliF [Brevundimonas subvibrioides ATCC
           15264]
          Length = 542

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 146/552 (26%), Positives = 243/552 (44%), Gaps = 17/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +  F  +    G  R+ ++  V      + +A    V       LY  L++ +   I+ +
Sbjct: 1   MGGFTAALQRFGIGRLAMVLGVGAGVAAVLVALMLRVGQAPDALLYSNLDLREAGEITAS 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L ++ I +    +GS+I V    VG+AR+ LA +GL +S S  GYELFD  +  G T F 
Sbjct: 61  LEQSGIPYSTRGDGSTIMVNRDQVGEARLMLAGKGLVTSGS-VGYELFDTQSVLGQTEFQ 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185
           Q+I+  RAL+GE+ARTI S+ G+ +ARV I +P    F++  A PTASV++         
Sbjct: 120 QQISEQRALQGELARTIMSMRGVQSARVAIALPKRELFQQDAAEPTASVVVGLGGRKLSS 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMN 244
               AIR ++A++VPNL    VTV+D T + L A + E       +     A + +++  
Sbjct: 180 DQVRAIRAVIASSVPNLKPNKVTVVDETNQTLAAADDEAGFSSATAEEAKGATEAQLQQR 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +   +G    R  V A+++M     +E  YDPD +V RS   +    +  T   + 
Sbjct: 240 IKDLVEGVVGPGAARVQVTADIDMTRSTTQEQKYDPDGQVVRSTSTNGTQSQDTTGVADG 299

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             T   N+P  +        S E      E +NYEI+  +  T  +  ++++LS+AV V+
Sbjct: 300 GATATNNIPGGAAPATTPAGSTE--SANTETTNYEISNTTTTTVKEPGEVKKLSVAVAVD 357

Query: 365 KG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
                  E  G +    +    + +I  +V AA G N  RGD + +T++ F  + L ++G
Sbjct: 358 GKLTPAAEPGGEATYAPRTAEEITQIEDLVKAAMGFNEERGDQVRVTNVRFNRDALVSAG 417

Query: 423 TVQ--VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                   ++         +  LV LV  LL+ F  L  L +  +    +    GG  I 
Sbjct: 418 GTDGGSPLLNFTKNDIMRGVELLVLLVTALLLIFFVLRPLLKSASGGGQQMAMAGGGQIP 477

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                ++ V          ++           R   +RI   V   S  ++   +E + +
Sbjct: 478 VTSLQTTMVGG--------SMGQLPGPSEMEQRIDIARIEGQVKASSVKKVADFVEKHPD 529

Query: 541 RFAKILRKWARS 552
               ILR W   
Sbjct: 530 ESTSILRSWVHE 541


>gi|300931151|ref|ZP_07146498.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1]
 gi|300461008|gb|EFK24501.1| flagellar M-ring protein FliF [Escherichia coli MS 187-1]
          Length = 507

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 124/532 (23%), Positives = 223/532 (41%), Gaps = 47/532 (8%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P Y  L+  L   D   I   L++ NI +R S+   +I VP+  V + R+ LA QGLP  
Sbjct: 1   PDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKG 60

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
            +  G+EL D+   FG++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F 
Sbjct: 61  GA-VGFELLDQE-KFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFV 118

Query: 166 KIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-M 222
           +    P+ASV +              AI HLV++A+  L  G+VT++D  G LLT +   
Sbjct: 119 REQKSPSASVTVNLLPGRALDEGQISAIVHLVSSALAGLPPGNVTLVDQGGHLLTQSNTS 178

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
            R++    L     ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+ 
Sbjct: 179 GRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNG 238

Query: 283 KVERSIRLSK---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLP 323
               +   S+   ++++S +  P        N P  ++                      
Sbjct: 239 DESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTS 298

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDS 383
            S   + ++ E SNYE++     T  +   ++RLS+AVVVN   L +           + 
Sbjct: 299 NSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNE 354

Query: 384 YLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
            + +I  +   A G + +RGD++ + +  F  +                      ++ A 
Sbjct: 355 QMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAG 410

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            +L+  L+   L   A+R            V  ++                  ++     
Sbjct: 411 RWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVR 458

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 459 LSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 507


>gi|293395603|ref|ZP_06639886.1| flagellar M-ring protein [Serratia odorifera DSM 4582]
 gi|291421922|gb|EFE95168.1| flagellar M-ring protein [Serratia odorifera DSM 4582]
          Length = 573

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 129/589 (21%), Positives = 238/589 (40%), Gaps = 64/589 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++          L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENGLQAQWNRLRANPKIPLLVAASAAIAIVVALLLWAKSPDYRVLYSNLNDRDGGAIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L++ NI +R ++NG+++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ 
Sbjct: 70  TQLTQMNIPYRFAENGAALMIPAEKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQ 127

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINP 182
           F ++I   RALEGE++RTI+S+  +  ARVH+ +P    F +    P+ASV   ++    
Sbjct: 128 FSEQINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTLNLQPGRA 187

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEI 241
                  AI ++VA++V  L  G+VTV+D  G+LLT ++     +    L     +++  
Sbjct: 188 LDDGQINAIVYMVASSVAGLPPGNVTVVDQAGRLLTQSDGSGRDLNASQLKYTSEVENRY 247

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE--- 298
           +  I   LA  +G  N R+ V A+++   ++  +  Y P+   E++   S+   +S+   
Sbjct: 248 QRRIEAILAPIVGSANVRAQVTAQIDFSIREQTDEQYQPNPTPEKAAIRSRQLSQSDQLG 307

Query: 299 -----------TSQPESAVTVEQNMPH----------------------VSDRKVPLPRS 325
                      ++QP +A T     P                        +         
Sbjct: 308 GQPVGGVPGALSNQPSAAPTAPIETPAADATANTNTTANNAPPAARQTSNTATGNGNGNG 367

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
                +++E +NYE++     T H +  ++RLS+AVV+N                    L
Sbjct: 368 QPQNSRRDETTNYEVDRTIRHTQHKSGAVQRLSVAVVLN---TLGSDKDGKPLPMSKQQL 424

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I  +V  A G +  RGDT+ + +  F E ++                   +++NA  +
Sbjct: 425 TQIESLVREAMGYSGTRGDTLNVVNSPFTETEMTAGELP----FWQTQSFIDSLLNAGRY 480

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           L+  L+   L    +                         ++                 +
Sbjct: 481 LLILLVAWLLWRKLV-------------RPQLQQRQAQQQAAIAAASAPAARPADAGKPS 527

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            D     +  Q R+++ V  Q   R+  + + +    A ++R+W  +EI
Sbjct: 528 NDELVQHKRSQQRVSAEVQSQ---RIRDLADKDPRVVALVIRQWMSNEI 573


>gi|317492408|ref|ZP_07950837.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919747|gb|EFV41077.1| flagellar M-ring protein FliF [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 573

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 119/546 (21%), Positives = 218/546 (39%), Gaps = 59/546 (10%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  LY  +   D   I   L++ NI +R +DNG+++ +P+  V + R+ LA QG
Sbjct: 52  WAKSPDYRVLYSNISDRDGGAIVTQLTQMNIPYRFADNGTALLIPADKVHETRLRLAQQG 111

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  +  ARVH+ +P  
Sbjct: 112 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVQTARVHLALPKP 169

Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +   +P+ASV   ++           AI ++V+++V  L  G+VTV+D  G LLT 
Sbjct: 170 SLFVREQKQPSASVTLNLQPGRALDEGQINAIVYMVSSSVAGLPAGNVTVVDQGGHLLTQ 229

Query: 220 NEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           ++   R++    L     ++  I+  I   L   +G  N  + V A+++   ++  +  Y
Sbjct: 230 SDGTGRDLNATQLKYANEVESRIQRRIEAILQPMVGNGNVHAQVTAQIDNAVREQTDEEY 289

Query: 279 DPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLP------------ 323
            P+    ++   S+    S  S             N P  +                   
Sbjct: 290 KPNQAPNQAAVRSQQLSDSSQSGGQLSGGVPGALTNQPAPAATGNITNPPQAGGANANTA 349

Query: 324 ----------------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                            S  +  +++E  NYE++     T      ++RLS+AVVVN   
Sbjct: 350 NAQRPASSTIDTNGRRSSSASNARRDETINYEVDRTIRHTQQKAGNVDRLSVAVVVNYTT 409

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
                            L ++  +V  A G ++ RGDT+ + +  F  +   +       
Sbjct: 410 ----NASGKSIPLTPQQLEQVTALVREAMGFSATRGDTLNVVNTPFTTSAEESGDVP--- 462

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
                S  F  ++    +L+  ++   L    ++ L N   A                + 
Sbjct: 463 -FWQQSSFFDLLMTLGRYLLVLIVAFILWRKLVKPLLNKQLA---------------NAQ 506

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
                             +      +N +       ++Q   R+  M E +    A ++R
Sbjct: 507 PARRVEPTPIVTTPVQPAKPSNEEIQNRRKSQQRATAEQQAQRVRDMAEQDPRVVALVIR 566

Query: 548 KWARSE 553
           +W  +E
Sbjct: 567 QWMSNE 572


>gi|298530643|ref|ZP_07018045.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510017|gb|EFI33921.1| flagellar M-ring protein FliF [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 532

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 128/556 (23%), Positives = 244/556 (43%), Gaps = 36/556 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + +++   +   +S    + +++A + L  I  F    FF+  P Y  L   L   D +
Sbjct: 7   DLQEKVTSLW---SSSSVPQRILVAGLGLSVIAAFAFLMFFITRPDYRVLSSDLYPEDAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+   L   N+ +++ D+G++I VP+  V K R+ ++ +G+       G+ELFD     G
Sbjct: 64  RVVEILESENVRYQLEDDGTTILVPADQVHKMRLAISGEGVLR-GEGMGFELFD-DTGIG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            T F+Q +   RAL+GE+ARTI   S +  ARVH+VMP+   F +    P+AS++++   
Sbjct: 122 QTDFVQNVNYQRALQGELARTISEFSEVEHARVHLVMPERSLFIEEETPPSASIVLQLRS 181

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237
                    ++I +LV   V  +D   VT+ D++G++L   + +    +    L      
Sbjct: 182 GQRLESSQIQSIVNLVVTGVEGMDSDRVTISDTSGRVLYEPQKDLLDGMSSTQLEYQLNF 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           Q ++E  I   L  F G     + V A+L+ D +  R+ ++DPD  V RS + S +    
Sbjct: 242 QRDLERRIEHMLTPFAGPGRVIAKVNADLDFDRRTTRQEIFDPDGSVVRSEQRSTEESSG 301

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T   E              +    P + + T + +  +N+EI+ +          ++RL
Sbjct: 302 GTFMEEGVP------EPDFQQGFEGPATTQETSRSDRTTNFEISREEHNIVASVGSVDRL 355

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AV+V+   +T+  G    +   D  +  I ++V  A G +  RGD+I ++S+DF   +
Sbjct: 356 SVAVLVDGQHVTDDAGEMVYEPLADEEMQRIQQLVERAVGFDQERGDSIEVSSVDFGAPE 415

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           +      + + MD L+++F T    L+  +  LL   L +  +          + E    
Sbjct: 416 VE----PEPTLMDNLAQYFQTFGKPLLNALLVLLFLLLVVRPIIMTILKPKVAEEEGEEA 471

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             L       A+  G+   +                 ++   +    +   +    + E 
Sbjct: 472 EGLPEGGEREALAPGMSEEE-----------------VEGMQDQKRVEGIKVFASQLAEE 514

Query: 538 NEERFAKILRKWARSE 553
           N ++   +++KW + E
Sbjct: 515 NFDQAFAVVKKWLKEE 530


>gi|295097226|emb|CBK86316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 511

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 119/539 (22%), Positives = 216/539 (40%), Gaps = 50/539 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            F+   P Y  L+  +   D   I   LS+ N+ +RI   G +I VP   V + R+ LA 
Sbjct: 1   MFWAKEPGYRVLFSNISDEDGGAIVAQLSQMNVPYRIDAPGGAILVPEGQVHEVRMKLAQ 60

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   S  G+EL DK   FG++ F +++   RALEGE+ARTI+++  I +ARVH+  P
Sbjct: 61  QGLPKGGS-VGFELLDKE-KFGISQFSEQVNYQRALEGELARTIENLGPIRSARVHLATP 118

Query: 160 DMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +PTASV +              AI HL+++AV  L   +VT++D  G+LL
Sbjct: 119 KQTMFVREQKQPTASVTVNLIQGRTLDEGQVIAITHLISSAVTGLTAENVTIVDQRGELL 178

Query: 218 TANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           T + +        L     I+ + +  I + LA  +G  N R+ V A+++   Q+  +  
Sbjct: 179 TQSGLRGLQTS-QLKYTSEIESDYQQRIQRILAPLVGSKNIRAQVTAQIDFTQQEQTQEQ 237

Query: 278 YDPDSKVERSIRLSKDAQRSETS---QPESAVTVEQNMPHVSDRKV-------------- 320
           Y P++  ++ +  S+   +SE               N P                     
Sbjct: 238 YQPNADPQKMVIRSRQTSQSEQGNGRGNGGVPGALTNQPPAPATAPLTQPLDKPAAQTST 297

Query: 321 ---PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                 RS    +  +E +N+E++       +   +++RLS+AVV+N             
Sbjct: 298 AGTGNDRSQPYNNHNDETTNFEVDRTLTHIKNAMGRIDRLSVAVVINHLPQGAE---GKP 354

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
               ++ L  IN +V  A G  + RGD++ I +  F   +                + + 
Sbjct: 355 GPLSEAELNRINALVKEAVGYTASRGDSVNILNSPFNGVEEEELPP-----FWKQDKFYQ 409

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            ++    +LV  ++   +    +                          +++    M  +
Sbjct: 410 LMMAIARYLVIAIIAWVMWRKLVHPAWIRH-----------------QETSLRRMEMEKE 452

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
               + + +   S             ++ +  +L  + E      A ++R+W   E++ 
Sbjct: 453 ARQEELAARKKASEKDARDRAQQRVDTELNSQQLRELAEQEPRVIALVIRQWMNQELKS 511


>gi|298736711|ref|YP_003729241.1| flagellar M-ring protein FliF [Helicobacter pylori B8]
 gi|298355905|emb|CBI66777.1| flagellar M-ring protein FliF [Helicobacter pylori B8]
          Length = 567

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDIPENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGTPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|217031571|ref|ZP_03437076.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128]
 gi|216946771|gb|EEC25367.1| hypothetical protein HPB128_21g129 [Helicobacter pylori B128]
          Length = 567

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGTPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGTNTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPIMPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|15644979|ref|NP_207149.1| flagellar MS-ring protein [Helicobacter pylori 26695]
 gi|2313452|gb|AAD07419.1| flagellar basal-body M-ring protein (fliF) [Helicobacter pylori
           26695]
          Length = 567

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 233/572 (40%), Gaps = 26/572 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGASKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L + +     +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGVNTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPVIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           +    ++   ++   +  A + +   + EI  
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISS 562


>gi|259417522|ref|ZP_05741441.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B]
 gi|259346428|gb|EEW58242.1| flagellar MS-ring protein [Silicibacter sp. TrichCH4B]
          Length = 571

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 143/570 (25%), Positives = 225/570 (39%), Gaps = 30/570 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            + Q       L   + ++     L  I  F       N P    LY  LE S    +  
Sbjct: 13  NVQQIKNVWAGLDTRKRMMAIGATLAVIFTFFLMSMVANKPSMQLLYAGLESSSAGDVVS 72

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL ++ +D+ +   G SI VPS+   + R+ LA+QGLP++    GYEL D ++ FG TS 
Sbjct: 73  ALEQSGVDYEVR--GGSIYVPSNKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQ 129

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           M +    RA EGE+ARTI +   +  ARVHI       F++      +  +     P   
Sbjct: 130 MFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIEPTASVSVTPMGTPITP 189

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
             A AIR LVA+AV  L + +V V+D+ G L+ + E                   +   +
Sbjct: 190 AQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAG----TDDRSQTLRERV 245

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + + A +G  N    +  E   DT+ IRE + DP S+V  S  + +    S+       
Sbjct: 246 LRLVEARVGHGNAVVEISVETVTDTESIREKLVDPQSRVAISTDVEERTDSSQNQ--AGE 303

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           VTV  N+P          R+  N  +  E+ NYEI+            ++RL++AV++N 
Sbjct: 304 VTVASNIPDGDAGNGEGSRANTNATR--ERVNYEISETEKEIVRGPGAIKRLTVAVLING 361

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                  G++  + + D  L  + +++SAA G ++ RGD IT+ SMD    +      V 
Sbjct: 362 VTTPTADGQATFEPRPDEELDALRELISAAVGFDAERGDVITLKSMDLPNVE-PEGTAVT 420

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR------LHNIDDAKKGEVGGKSI 479
            S  D L     ++I      V  L++    +  +                    G   +
Sbjct: 421 SSMFDNLYFDVMSIIQMAALAVVALILGLFVVRPILAGNGASVQALPSPDGMAAGGLPEL 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS------------YVSKQS 527
            +     +   T      NIALD                +               +S   
Sbjct: 481 PNMGGGDAGFMTNPDLGSNIALDGEIDSGGDGQFQPLGGLPGMGDGLATFGGGGGMSDDP 540

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557
             RL  MI   +E   +ILR W     E+R
Sbjct: 541 VDRLRSMIGERQEETVQILRGWLEENNEER 570


>gi|218887376|ref|YP_002436697.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758330|gb|ACL09229.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 539

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 128/557 (22%), Positives = 237/557 (42%), Gaps = 38/557 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+ D + +       +  ++ + +A + +  + +F    F++N P Y  LY  L   D +
Sbjct: 4   ALADVIQKAKGFWERISISQRIFIAGLAVAVVAVFFGLVFWMNRPDYRVLYSNLSPEDAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+   L    + +++   GSSI+VP+  V   R+ +A +G        G+E+FD+V   G
Sbjct: 64  RVVKLLQADKVAYKLESGGSSITVPADKVYDLRLKVAGEG-NLVGQGIGFEIFDQV-KVG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180
            T F+Q+I   RAL+GE++RTI     + +ARVH+V+P    F +   +P+ SV+++   
Sbjct: 122 QTDFVQKINYQRALQGELSRTISEFPNVESARVHLVIPHRSLFIEEQQKPSVSVVLKLRD 181

Query: 181 --NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQ 235
                  K  +AI +LV  AV  LD   V++ D+TGK+L A + + +   +    L    
Sbjct: 182 SSKKLESKDVQAIVNLVVMAVEGLDKYKVSIADTTGKILYAPDEDGSITGMTTTQLDHKL 241

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q  +E  I + L   LG     + V A+L+   + IR+ +YDP+  V RS + S+++Q
Sbjct: 242 RMQQTLERRIEELLYPVLGAGKIIAKVNADLDFSQRTIRKELYDPEKTVVRSEQRSEESQ 301

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           R  ++    +        +          S +  +++   +NYEIN +          + 
Sbjct: 302 RGRSNLEAGSPDA-----NFRGDSPTGGASTQEGNRETRTTNYEINKEEQNIVAQVGDIS 356

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RL++AV+V+        G+ A   +    +  I ++V+ A G +  RGDTI ++S+ F  
Sbjct: 357 RLTVAVIVDGTYEKGADGQWAFVPRKAEDVERIRQLVANAVGYDRARGDTIEVSSISFGG 416

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +    ++    MD                          L   + L N        V 
Sbjct: 417 PDVPQESSLPQLVMDY------------------------ALRLGKPLLNALLVFLFLVL 452

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS-KQSDLRLLHM 534
               +    I   V   ++       +   +            +++    +      L M
Sbjct: 453 VVRPVVLAMIRPRVEGEMIEGLEGLPEGEERLALIEGDEEVDALDALKKIEDIKAHALQM 512

Query: 535 IEINEERFAKILRKWAR 551
            E N ++   I+R W +
Sbjct: 513 AEQNMDQAVSIIRSWLK 529


>gi|226944512|ref|YP_002799585.1| flagellar M-ring protein [Azotobacter vinelandii DJ]
 gi|226719439|gb|ACO78610.1| flagellar M-ring protein [Azotobacter vinelandii DJ]
          Length = 576

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 126/540 (23%), Positives = 221/540 (40%), Gaps = 47/540 (8%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
             P Y  L+  L+ +D  RI   L    I +R+S+ G S+ VP+  +   R+ LA QGLP
Sbjct: 54  REPEYRVLFANLDEADGGRIIGELDRRAIPYRLSEGGHSLLVPADQLHTLRLQLAEQGLP 113

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
               N G+EL DK  +FG++ F ++I   R LEGE+AR+I+S+  +  ARVH+ M     
Sbjct: 114 Q-GGNVGFELLDK-QAFGVSQFAEQINFQRGLEGELARSIESLGPVSRARVHLAMAKQSV 171

Query: 164 FRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           F +      ASV++              AI HLV+++VP L +  VTV+D  G+LL+   
Sbjct: 172 FVREREPARASVVLNLQPGRELGESQVNAIAHLVSSSVPGLSIDAVTVVDQNGRLLSRQG 231

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
             R++ G  L  +  ++   +  I   LA  LG  N R+ VVA+++  +++     Y P+
Sbjct: 232 GARDLDGTQLDYIDEVERSYQRRIENILAPILGAQNVRAQVVAQIDFASREQTAERYAPN 291

Query: 282 SKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLENTD-------- 330
            +   +   S+    + +              N P           +             
Sbjct: 292 QQPGEAAVRSQQLSENLSGGTELARGVPGALTNSPPNPPPPPAPAANETTQTGNAAGTGG 351

Query: 331 ----------------KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
                            ++  +NYE++       +    ++RLS AVVVN     +  G+
Sbjct: 352 TGQAAAAAAEKAPTTLSRDNTTNYEVDHSVEHVQYRRGSVQRLSAAVVVNYRDAIK-DGQ 410

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSR 434
           ++ +      LA I+++V  A G    RGD + I +  F ++ + +    +         
Sbjct: 411 TSREPLSQEELARIDRLVRQAMGFTDSRGDQLEIMNSPFADSLVVDQQ--EWWKTPEFYN 468

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
              ++   L+     LL+  + L  L+R H    A +     ++  +      A     +
Sbjct: 469 LATSLSRYLLVAFIALLLWLMVLRPLKRRHREKLAAEASARAEAAEAAQLALEASRVPAL 528

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +              S+    R  S + +Q+   L  M + +    A I+R W + E 
Sbjct: 529 AAEE-------------SQRRDLRRKSPIYEQNLQSLREMAKEDPRLVAMIVRGWMKKEE 575


>gi|238782822|ref|ZP_04626851.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
 gi|238716245|gb|EEQ08228.1| Flagellar M-ring protein [Yersinia bercovieri ATCC 43970]
          Length = 569

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 117/584 (20%), Positives = 219/584 (37%), Gaps = 65/584 (11%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
                   +  +  +IL       I L +A  F+  SP Y  L+  +   D   I   L+
Sbjct: 15  NLMAVLERIRSSPKIILLISASAAITLIIALLFWAKSPDYRVLFSNITDQDGGAIVSQLA 74

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           + N+ +R  D G +I VP+  V +AR+ LA  GLP   +  G+EL D+   FG++ F ++
Sbjct: 75  QMNVPYRFEDRGGAIMVPADKVYEARLKLAQLGLPKGGA-VGFELLDQE-KFGISQFSEQ 132

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186
           +   RALEGE++RTI+++  +  ARVH+ MP    F +   +P+ASV +R         +
Sbjct: 133 VNFQRALEGELSRTIETLGSVNGARVHLAMPKPSMFVREQKQPSASVTVRLNNGRLLEGE 192

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              AI +L+A+AVP L    VT++D  G+LLT    +       L     ++ + +  I 
Sbjct: 193 QVSAITYLIASAVPGLSADSVTIVDQNGRLLTQRGGQTTQTS-QLKFTSEVEADFQQRIQ 251

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA---QRSETSQPE 303
             L+  +G +N +S V A+L+    +     + P++  +R    S  +   ++       
Sbjct: 252 SILSPIVGRNNVKSQVTAQLDFTLHEQTAEQFQPNTAPDRMSIRSSQSSDAEQGGKGGVG 311

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLEN-------------------------------TDKK 332
                  N P +         +                                   +++
Sbjct: 312 GVPGALSNQPSLPATAPITQAATPTAPGATGAAGAATAGATGAKGGAATVATPIPFNNRR 371

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           +  +NYE++            +ERLSIAVV+N                    + +I+ +V
Sbjct: 372 DNTTNYELDRTLTHIKRSTGSIERLSIAVVINYL----PTAEGESAPLPKEQMEQISALV 427

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A G ++ RGDT+ I +  F   +   +           +     ++ A  +L+  ++ 
Sbjct: 428 KEAVGFSAERGDTVNIVNSPFNNVEEEVAPP-----FWQQAGFINLLMAAGRYLLVAIVA 482

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
                 A++     +             +      A        +    +   +   +  
Sbjct: 483 WLFWRKAIKPAWLRNQELILARLELEKEARQAELDAHKRKAESGERAKAEQRVEAELNTQ 542

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                             L  + E      A ++R+W   E++ 
Sbjct: 543 N-----------------LRELAEQEPRVVALVIREWINKELKS 569


>gi|311105960|ref|YP_003978813.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8]
 gi|310760649|gb|ADP16098.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans A8]
          Length = 553

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 117/546 (21%), Positives = 203/546 (37%), Gaps = 70/546 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ +R ++ G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWSSEPKYKVLFSNLDDRDGGAIVAALGTMNVPYRYNETGTAVLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFTEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQAPTASVLLNMHPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 A-NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A     R +    +  V+ ++      I   L   +G  N  +   A+++   ++    V
Sbjct: 223 APMGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKV-------------- 320
           Y P+ +  ++   S+    S        +       N    + +                
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSSQRGVNAAQGVPGALSNQAPANPQAPIANPPQPQPPRPGQ 342

Query: 321 ------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
                           +    ++++  +NYE++            L+RLS+AVVVN  R 
Sbjct: 343 PQQPANAQQQTSTQAATGNLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVVNYMR- 401

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                    Q      L ++  +V  A G +  RGD++ + +  F +        V +  
Sbjct: 402 ---DKDGELQPLPPEELNKLTNLVREAMGYSEPRGDSLNLVNSQFND----GPPPVPMWR 454

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
              +   F T++  LV  V  L         LRR          +              A
Sbjct: 455 DPEMISLFKTILAWLVGGVLAL----WLYRLLRRTVGDYLYPPVDPEQAEAERVEAAREA 510

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                    +                          + +  R   M   +    A +LR 
Sbjct: 511 QDAARAKEVD------------------------RYQDNLERARTMANKDPRAVAMVLRT 546

Query: 549 WARSEI 554
           W   + 
Sbjct: 547 WMSKDE 552


>gi|90418370|ref|ZP_01226282.1| putative flagellar M-ring protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338042|gb|EAS51693.1| putative flagellar M-ring protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 563

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 203/556 (36%), Positives = 317/556 (57%), Gaps = 7/556 (1%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +  Q   + T+LG  R+  L  V L+ + L     ++++ P  + LY  L+ +DV RI  
Sbjct: 8   KAQQLLTNLTALGPRRLGALGLVGLLVVALVGLGSYYLSRPDMETLYSGLDRTDVTRIGA 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL+EA I F +   G +I  P S    AR+ LA +GLP S  N+GYELFD + S GLTSF
Sbjct: 68  ALTEAGIPFDVDSKGDAILTPFSQTAPARMLLAEKGLPRS-ENAGYELFDNLGSIGLTSF 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQEITRVRALEGEIARTIQ++  + AARVHIV+PD GSFR+   +P+ASV++R  N + +
Sbjct: 127 MQEITRVRALEGEIARTIQTLRNVRAARVHIVLPDKGSFRREQQKPSASVVVRTENGNDF 186

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQHEIEMN 244
            SA+AIR LVA+A+P++   +VT+L++ G LL + +   +     L  I   +  +IE +
Sbjct: 187 GSAQAIRSLVASAIPSMTPEEVTILNADGTLLASGDEGVSAAPTKLFGIESVVSKDIEQS 246

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I + LA +LG+ NF+++VVA L+ D +QI E ++DP+S+VERS R  ++  +S     E+
Sbjct: 247 IRRTLAPYLGIGNFQTSVVARLDTDRKQISERIFDPESRVERSTRTIRENNQSANRASET 306

Query: 305 AVTVEQN---MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
            V VEQ+   +           +S E T+++EE +NYEIN K+I+TT D Y++ERLS+AV
Sbjct: 307 PVGVEQDVREVDAAPAGGGGGEQSSEETERREELTNYEINEKTISTTSDGYQVERLSVAV 366

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VV++ R+ E +G +    +ID+ + EI  +V++A+G ++ RGD I +T++DF+ +     
Sbjct: 367 VVDRKRVLEAIGENPTDAQIDARIGEIKALVASASGFSADRGDQIEVTAVDFIASDDALE 426

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                S  ++  R   T+INAL  L   +++ + GL    R      A +G         
Sbjct: 427 PIPAPSLGEMFMRQSGTLINALTILAVAIMLIWFGLKPAVRAIAAMPAAEGTTLAALDDD 486

Query: 482 PPPISSAVTTGLMPN--DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P        L  +  +N+  DS       +       +N  V      RL  +++ NE
Sbjct: 487 EMPELDDDARALSESLLENLNYDSDPAGGSGNEIGFLDDLNFNVGNSPRARLERLLDHNE 546

Query: 540 ERFAKILRKWARSEIE 555
           E  A ++++W   +  
Sbjct: 547 EHAATVMKQWLNQKEA 562


>gi|224418248|ref|ZP_03656254.1| flagellar MS-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|253827573|ref|ZP_04870458.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|313141781|ref|ZP_07803974.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis
           MIT 98-5491]
 gi|253510979|gb|EES89638.1| flagellar M-ring protein [Helicobacter canadensis MIT 98-5491]
 gi|313130812|gb|EFR48429.1| flagellar basal-body m-ring protein flif [Helicobacter canadensis
           MIT 98-5491]
          Length = 576

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 115/573 (20%), Positives = 231/573 (40%), Gaps = 29/573 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS--------PHYDNLY 52
           M +     Q       L + + +++ + I+  +        + +         P Y  L+
Sbjct: 1   MDLKALFEQIRNLYKRLNKKQKIVILATIVAIVAFISGLIVWNSMNNKAGVMYPGYAVLF 60

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112
             +   D   I   L +  I ++I  + ++I +P  +V + R+ LA+ G+P SS   G+E
Sbjct: 61  EGVSPEDGALIIQQLQQDKIPYQIPKD-NTILIPQELVYEQRMKLASNGIPKSS-KVGFE 118

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +FD  + FG T F Q +  +RA+EGE+ARTI+S+S I  A VHI  P+   F      PT
Sbjct: 119 IFDTQD-FGATDFDQRVKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177

Query: 173 ASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNIL 227
           ASV++  +       K    I+++V++A+PNL + +V V++  G+ L+  +     R + 
Sbjct: 178 ASVVLAFKPGQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELA 237

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVER 286
              L      +  +E  I   LA   G      + V AE +   ++  +  YDP++ V  
Sbjct: 238 AAQLRYKNNFEQSLEEKIINILAPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVRS 297

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
              L +  + S+  +      V  N+  V         + E  +K +  +NYE++     
Sbjct: 298 EQNLEEKREGSKPKEIGGVPGVVSNIGPVQGL--EDENNRERYEKSQTTTNYEVSKTISN 355

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402
              +   + RLS AVVV+     ++     +Q       +S + +I+ +V  A G N +R
Sbjct: 356 IKGEFATIRRLSAAVVVDGKYQKQIDENGIEQLQYTALNESEMQQISALVRQAIGFNEQR 415

Query: 403 GDTITITSMDFL-ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           GD +++++     ++  F + T    F++         +  L +++  +++       + 
Sbjct: 416 GDEVSVSNFQLNGQDSGFKARTPLERFLETAQNLLTPFMPLLKYVIVGIILFLFYKKVIL 475

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                    K +   +              G   N+            + +       + 
Sbjct: 476 PFSERMLEAKADEEEEIESLLKVDDEEEENGDKLNEVRRRIEDQLGFGNGNNE-----DE 530

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +    ++  + +      A + +     E+
Sbjct: 531 VKYEVLLEKIREVAQEKPTELANLFQTLVHDEL 563


>gi|33592502|ref|NP_880146.1| flagellar MS-ring protein [Bordetella pertussis Tohama I]
 gi|33572148|emb|CAE41692.1| flagellar M-ring protein FliF [Bordetella pertussis Tohama I]
 gi|332381920|gb|AEE66767.1| flagellar MS-ring protein [Bordetella pertussis CS]
          Length = 558

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/551 (21%), Positives = 205/551 (37%), Gaps = 75/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R SDNGS++ VP+  V   R+ LA+Q
Sbjct: 45  MWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              A+  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A     R +    L  V+ ++      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSL-------- 326
           Y P+ +  ++   S+    S  + P   +       N P  + +   +            
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342

Query: 327 -----------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                   + D+ +   NYE++            L+RLS+AVVV
Sbjct: 343 QQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N             +      L ++  +V  A G +  RGD++ + +  F +  +     
Sbjct: 403 NYL----PNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                          +I   +  +  L++ F     +R +       +            
Sbjct: 459 RDP--------ELIAMIKTALGWLFGLILAFWLYRKIRPVVTDYFYPQV----------- 499

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                        D     +  Q+    ++           + +      M   +    A
Sbjct: 500 -------------DPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAVA 546

Query: 544 KILRKWARSEI 554
            +LR W   + 
Sbjct: 547 MVLRSWMSKDE 557


>gi|27381975|ref|NP_773504.1| flagellar MS-ring protein [Bradyrhizobium japonicum USDA 110]
 gi|27355145|dbj|BAC52129.1| flagellar M-ring protein [Bradyrhizobium japonicum USDA 110]
          Length = 553

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 184/539 (34%), Positives = 301/539 (55%), Gaps = 17/539 (3%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
           G  R++ L  +    ++  +   ++++ P ++ LY  L   DV R+  AL E NI F ++
Sbjct: 30  GPRRLMALGLIGFAVLVTVVGGAYYLSRPEFETLYTGLSREDVTRMGAALREQNIAFDVN 89

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
             G ++SV  S   +AR+ LA +GLP+S +NSGYELFDK+ S GLTSFMQE+T++RALEG
Sbjct: 90  TAGDAVSVRPSQTMQARMLLAEKGLPTS-ANSGYELFDKIGSLGLTSFMQEVTKLRALEG 148

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA 197
           EIART+Q + G+ AARVHIVMP  GSFR     P+ASV++R       ++A++IRHLVAA
Sbjct: 149 EIARTVQLMKGVKAARVHIVMPVRGSFRATQQPPSASVVLRTDGAIEARTAQSIRHLVAA 208

Query: 198 AVPNLDMGDVTVLDSTG-KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           A+P +    VTVLD+ G  LL   +       K  S+ + +   ++ NI KAL  +LG+D
Sbjct: 209 AIPGMSRDKVTVLDADGSMLLAEEDEATAAPTKMASLQKTVGGMVQENIRKALTPYLGLD 268

Query: 257 NFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
           NF  +V  +L+ D +Q  E VYDP+ + ERS+R  ++ + S+ +   +  TV+QN+P   
Sbjct: 269 NFEVSVAPQLSTDKRQTNETVYDPEGRAERSVRNVREKESSQNADRSTPTTVQQNLPDQQ 328

Query: 317 DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA 376
                   S E+  ++E+ +N+E+++K+  T  D Y +++L IAV+VN+ RL   LG  +
Sbjct: 329 VNAGGSKNSSEDKTRREDVTNFEVSSKTTTTVSDGYLVKKLFIAVLVNRARLVADLGDKS 388

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
           +Q  +DS LAEI+++ + A G++ +RGD I +T++DF+E     +    +SF++++++  
Sbjct: 389 NQAIVDSKLAEISQLAATAGGLDKQRGDQIQVTAVDFIEGSRELAPVPPISFVEMINKQL 448

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
            +VINA+  L    ++ + GL                     IL+               
Sbjct: 449 GSVINAVTILAVASMLVWFGLRP---------------AVNGILTHRAAQEQTEAAEAAE 493

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
              A   +  +      NL   +   + +    RL  ++ +++ + A IL+ W R E  
Sbjct: 494 LEAATALALAESQDPELNLVEDLEGKMQRTPQKRLEQIVRLDQAQAAAILKDWMRREEA 552


>gi|108562771|ref|YP_627087.1| flagellar MS-ring protein [Helicobacter pylori HPAG1]
 gi|107836544|gb|ABF84413.1| flagellar basal-body M-ring protein [Helicobacter pylori HPAG1]
          Length = 567

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|242238981|ref|YP_002987162.1| flagellar MS-ring protein [Dickeya dadantii Ech703]
 gi|242131038|gb|ACS85340.1| flagellar M-ring protein FliF [Dickeya dadantii Ech703]
          Length = 569

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 113/549 (20%), Positives = 216/549 (39%), Gaps = 63/549 (11%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  SP Y  LY  L   D   +   L++ N+ +R +DNG +I +PS  +   R+ LA  G
Sbjct: 48  WAKSPDYRVLYSNLNDRDGGEVVTQLTQMNVPYRFADNGGAILIPSDKIYDTRLRLAQLG 107

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   +  G+EL D+   FG++ F ++I   RALEGE++RTI+++  + +ARVH+ +P  
Sbjct: 108 LPKGGA-VGFELLDQE-KFGISQFSEQINYQRALEGELSRTIETLGPVHSARVHLAIPKP 165

Query: 162 GSFRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV   ++           AI ++V+++V  L   +VTV+D  G+LL+ 
Sbjct: 166 SLFVREQKSPSASVTLNLQPGRALDEGQINAIVYMVSSSVSGLPPENVTVVDQNGRLLSQ 225

Query: 220 NEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
            +     +    L     ++   +  I   L   +G+ N  + V A+++   ++  +  Y
Sbjct: 226 TDAAGRDLNAAQLKYATEVEGRYQRRIEAILTPIVGMGNVHAQVTAQIDFSNREQTDEQY 285

Query: 279 DPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKVPLPRSLE-------- 327
            P+    ++   S+ + +SE               N P  +          +        
Sbjct: 286 QPNQTPNQAAVRSQQSSQSEQLGGRNIGGVPGALSNQPSATPTAPVTTPGNQTNQNNASQ 345

Query: 328 ----------------------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                                 +  +++   NYE++     T      ++RLS+AVVVN 
Sbjct: 346 TNAANNASAGAQAGTSASGLQSSNTRRDSTINYEVDRTIRHTKQSAGNVQRLSVAVVVNY 405

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                           +  + +I  +     G +S RGDT+ + +  F E    +     
Sbjct: 406 AL----NSEGKAAALSEEQVKQIESLTRETMGFSSDRGDTLNVVNAPFNEVTDGSGELP- 460

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
                        V +   +L+  L+   L    +R        ++  + G S       
Sbjct: 461 ---FWQKQAFLDLVTSIGKWLLVLLVAWILWRKTVRPQMQKRAQQQALMEGLSAAK---- 513

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
                      +   +   +++     R  Q R+++    Q   R+  + E      A +
Sbjct: 514 ----------QEEDIVVQLSREEQEQQRKSQQRVHAENQSQ---RIRDLAESEPRVCALV 560

Query: 546 LRKWARSEI 554
           +R+W  +E+
Sbjct: 561 IRQWMSTEL 569


>gi|253688952|ref|YP_003018142.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755530|gb|ACT13606.1| flagellar M-ring protein FliF [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 574

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 118/586 (20%), Positives = 231/586 (39%), Gaps = 63/586 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  +   D   I   L
Sbjct: 13  NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVGEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R +++G +I +P+  V + R+ LA  GLP   +  G+EL D+   FG++ F +
Sbjct: 73  TKLNIPYRFAESGGAIMIPAEKVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           +I   RALEGE++RTI+++  +  ARVH+ +P    F +    P++SV +          
Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKAPSSSVTLTLQPGRALDE 190

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               +I ++V+++V  L   +VTV+D TG+LLT        +    L     ++   +  
Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS---Q 301
           I   +A  +G+ N  + V A+++   ++  +  Y P+   +++   S+   +SE      
Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQRGGPN 310

Query: 302 PESAVTVEQNMPHVSDRKVPLPRS---------------------------------LEN 328
                    N P  +       +                                    +
Sbjct: 311 VGGVPGALSNQPAPAPTAPIATQPNNANANANNQAGQQNQNNAAGAQANAANANTAIQTS 370

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             + +  +NYE++   + T H    ++RLS AV+VN                 +  + +I
Sbjct: 371 NIRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIVNYQ---PPGEDGKPVALTEEQIKQI 427

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G ++ RGDT+ + +  F+++   +               F  ++ A  +L+ 
Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            ++   L    +R        ++      + LS               DN  + + +   
Sbjct: 484 LIVAWILWRKLVRPQLQRKAQQQEAALAAAALSQGA------------DNDVMVNLSSSE 531

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               R  Q R+N+ +      R+  M E +    A ++R+W  +E+
Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574


>gi|120603707|ref|YP_968107.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4]
 gi|120563936|gb|ABM29680.1| flagellar M-ring protein FliF [Desulfovibrio vulgaris DP4]
          Length = 538

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 118/546 (21%), Positives = 226/546 (41%), Gaps = 37/546 (6%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             + +  ++ + +  + LV + +F     ++N P Y  LY  L   D NR+   L    +
Sbjct: 15  FWSRISMSQRVFIVGLALVTVGIFFTLILWINRPDYRVLYSNLAGEDANRVVKLLQANKV 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +++ ++G ++ VP+  +   RI +A +G        G+E+FD +   G T F+Q+I   
Sbjct: 75  PYKLENDGGTVLVPADKLYDLRIKVAGEG-NLVGQGIGFEIFDDL-KVGQTDFVQKINYQ 132

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190
           RAL+GE+ RTI    G+  ARVH+V+P    F +   +P+ASV+++         +  +A
Sbjct: 133 RALQGELIRTISEFPGVETARVHLVIPHRSLFIEEQQKPSASVVVKLREGKKMEAQDVQA 192

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIEMNINK 247
           I +LV  AV  +D   V+V D++GK+L     + ++       L     +Q  +E  I +
Sbjct: 193 IVNLVVMAVEGMDRNRVSVADTSGKILYYPTEDDSLQGLTTTQLEYKMRLQQNLERRIEE 252

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   +G     + V A+++   + IR  +YDP+  V RS + S+++ R   +    A  
Sbjct: 253 LLYPVIGPGKVIAKVNADVDFSQRTIRRELYDPEKTVVRSEQRSEESTRGRANLEAGAPD 312

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                 +     +    S +   ++   +N+EIN +      +   L RLS+AV+V+   
Sbjct: 313 A-----NFRGDGISGSASTQEGTRETRTTNFEINKEEQNIVANVGDLSRLSVAVIVDGTY 367

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
                G      +    +  I ++VS+A G +  RGDT+ + S+ F    L    ++   
Sbjct: 368 EKAADGTYTFVPRNAEEMQRIRQLVSSAVGYDRARGDTVEVNSISFGGPDLPQEASLPQL 427

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           F+D                          L   + L N        +     +    I  
Sbjct: 428 FLDY------------------------ALRLGKPLLNALLVFLFLLLVVRPVVMALIRP 463

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS-YVSKQSDLRLLHMIEINEERFAKIL 546
            V   ++           +            +++    +      + + E N ++   I+
Sbjct: 464 KVEGEMIEGLEGLPAGEERLALIEGDEEVDALDALRKIEDIKAHAMQLAEQNMDQAVGII 523

Query: 547 RKWARS 552
           R W ++
Sbjct: 524 RSWLKN 529


>gi|254779042|ref|YP_003057147.1| flagellar MS-ring protein [Helicobacter pylori B38]
 gi|254000953|emb|CAX28897.1| Flagellar M-ring protein [Helicobacter pylori B38]
          Length = 567

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566


>gi|227329938|ref|ZP_03833962.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 574

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 119/586 (20%), Positives = 235/586 (40%), Gaps = 63/586 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  +   D   I   L
Sbjct: 13  NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++NG +I +P++ V + R+ LA  GLP   +  G+EL D+   FG++ F +
Sbjct: 73  TKLNIPYRFAENGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           +I   RALEGE++RTI+++  +  ARVH+ +P    F +    P++SV +          
Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKAPSSSVTLTLQPGRALDE 190

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               +I ++V+++V  L   +VTV+D TG+LLT        +    L     ++   +  
Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +A  +G+ N  + V A+++   ++  +  Y P+   +++   S+   +SE     +
Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQRGGPN 310

Query: 305 AVTVEQNMPHVSDRKVPLPRS------------------------------------LEN 328
              V   + +        P +                                      +
Sbjct: 311 VGGVPGALTNQPAPAPTAPIATPPNNANANANNQAGQQNQNNAAGAQANAANANTVIQTS 370

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             + +  +NYE++   + T H +  ++RLS AV+VN                 +  + +I
Sbjct: 371 NVRNDATTNYEVDKTILHTKHSSGGVKRLSAAVIVNYQ---PPGEDGKPVALTEEQIKQI 427

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G ++ RGDT+ + +  F+++   +               F  ++ A  +L+ 
Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            ++   L    +R        ++      + LS               DN  + + +   
Sbjct: 484 LIVAWILWRKLVRPQLQRKAQQQEAALAAAALSQGA------------DNDVMVNLSSSE 531

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               R  Q R+N+ +      R+  M E +    A ++R+W  +E+
Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574


>gi|323698502|ref|ZP_08110414.1| flagellar M-ring protein FliF [Desulfovibrio sp. ND132]
 gi|323458434|gb|EGB14299.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans ND132]
          Length = 530

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 110/556 (19%), Positives = 232/556 (41%), Gaps = 36/556 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + +   +          ++ +++  +    ++ F    +++N P Y  L   L   D +R
Sbjct: 5   VAEYWSKMQGIWADRTVSQRILIGGLTAAVVISFALMIYWMNKPDYRVLMTNLYPEDASR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L     D+++ +NG++I VP+  V + R+ +A +G        G+E+FD+V   G 
Sbjct: 65  VVGMLQAQKEDYKLENNGTTIMVPADRVYELRLKVAGEG-NLHGQGIGFEIFDEVQ-IGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q +   RAL+GE+ARTI     +  ARVH+V+P    F +    P+AS++++    
Sbjct: 123 TDFVQHVNYQRALQGELARTITEFPIVDKARVHLVIPQKSLFIEDQVAPSASIVLQLKGE 182

Query: 183 --SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237
                   + I +LV+ AV  L+  ++TV D  G  L   E +     +    L     +
Sbjct: 183 GKLEPDEIKGIVNLVSMAVEGLEPKNITVTDMKGHPLYTPEDQSTGLAMSNAQLLHKADV 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +++  I + L   +G D   + V A+L+   + +R+ VYDP+S V RS   +++    
Sbjct: 243 EGKLQRRILELLGPAVGPDKVIARVNADLDFSQRTVRKEVYDPNSAVVRSETRNEETTSG 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                  A  V     +         ++ +++ ++   +N+EI+ +         +L+RL
Sbjct: 303 AADLGGGAPDV-----NFRGDGFSGTKTTQDSTRESRTTNFEIDKQEENIITPVGELKRL 357

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AV+V+    T+  G+     +    +  I  ++  A G +++RGDTI ++++ F E Q
Sbjct: 358 TVAVIVDGTWQTDADGKQVYVPRSAEEINRIRTLIENAVGFDAQRGDTIEVSNISFGEPQ 417

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L +  ++  + ++                              +   N        +   
Sbjct: 418 LADGDSLMRTMLEYAQ------------------------RLGKPFLNGLLIFLFLILVV 453

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             +    I   V    +        S    +     + ++   S   + +    + + + 
Sbjct: 454 RPVVMALIRPRVAEQEIEEMAGLPGSERLALEEEEMDEEALDASRRLENAKNHAIQLSDE 513

Query: 538 NEERFAKILRKWARSE 553
           N ++   +L+ W   E
Sbjct: 514 NIDQAVHLLKTWLTQE 529


>gi|293605027|ref|ZP_06687421.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553]
 gi|292816576|gb|EFF75663.1| flagellar M-ring protein FliF [Achromobacter piechaudii ATCC 43553]
          Length = 558

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 110/551 (19%), Positives = 199/551 (36%), Gaps = 75/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ +R ++ G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWTSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYRYNETGTALLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQAPTASVLLNVYPGRSMSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A     R +    +  V+ ++      I   L   +G  N  +   A+++   ++    +
Sbjct: 223 APLGEGRGMDADQMRFVREMEQRTVERILTILNPLVGPGNVHAQASADVDFARREETSEI 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLEN------ 328
           Y P+ +  ++   S+    S        +       N    + +                
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSTQRGVNPAQGVPGALSNQAPPNAQAPLANPPAAQPPRPGQ 342

Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                     ++++  +NYE++            L+RLS+AVVV
Sbjct: 343 PPAAANAQQQQQQQQTGTQAATANLNERRDATTNYEVDRTISHIKQPVGNLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N  R          Q      L ++  +V  A G +  RGD++ + +  F +        
Sbjct: 403 NYIR----DKDGEPQALPPEELNKLTNLVREAMGYSETRGDSLNLVNSQFNDGPPPLPMW 458

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                +         +   ++  +  L++ F     +RR          +          
Sbjct: 459 RDPEMI--------ALFKTILAWLVGLVLAFWLYRKIRRSVTEYLYPPVDPEMAEAERQE 510

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
               A                                    + +  R   M   +    A
Sbjct: 511 AAREAQDAA------------------------RTKELSRYEDNLERARTMANKDPRAVA 546

Query: 544 KILRKWARSEI 554
            +LR W   + 
Sbjct: 547 MVLRTWMSKDE 557


>gi|220932525|ref|YP_002509433.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168]
 gi|219993835|gb|ACL70438.1| flagellar M-ring protein FliF [Halothermothrix orenii H 168]
          Length = 519

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 138/560 (24%), Positives = 235/560 (41%), Gaps = 54/560 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
             D + QF +  ++L +   +++ S + V ++  +      +SP Y  L+  L   D + 
Sbjct: 5   FQDYIEQFKELWSNLNKRAKVVIISGVGVDLLTLILIIAMGSSPDYQPLFSNLNPRDADA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I +R++DNG +I VPS  V K R+ +A +GLPS     G+E+F++ N FG 
Sbjct: 65  IIEKLDEQGIPYRLTDNGQTILVPSQHVYKTRLDMAGEGLPSQGV-VGFEIFNQSN-FGT 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AI 180
           T F +++   RAL GE++R+IQ++  I  A+V I  P    F +      ASV+++    
Sbjct: 123 TDFERKVNFYRALGGELSRSIQAMEAIEYAKVQITAPKESLFIEEEQPAEASVLLKFVPG 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM----ERNILGKSLSIVQA 236
           +       +AI +LVA++V  LD   VT++D++G LL+ N         +      I + 
Sbjct: 183 HKLSPDQVKAISNLVASSVQGLDPDKVTIVDTSGNLLSRNTDKDFYNSQLTMNQFEIQRK 242

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
               +E ++   L   LG DNF   V A LN D +Q+    Y P   D  + RS +  ++
Sbjct: 243 FAESLENDLRAFLFKVLGPDNFTVQVKAWLNFDKRQVESKTYSPVVGDEGIVRSQQEHEE 302

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           +   E            N+P      V    S    +  +  +NYEIN K     +    
Sbjct: 303 SYEGENPVATGVPGTTSNIPQYQS--VEEENSGGTYESSDVITNYEINEKIEKHVYSPGS 360

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +ERLS+AV+VN     +              L +I   V AA G +  RGD +T+TSMDF
Sbjct: 361 VERLSVAVIVNSSLERDE-------------LQKIRNAVQAAIGYDPERGDMVTVTSMDF 407

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
                           + L +  A   ++ +    T +  + GL  L  +         +
Sbjct: 408 D---------------ETLKQQVAQAQSSALQAQKTRMYIYGGLIVLILIILSILLLSFK 452

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
              +S       +     G    + +A     +                  ++    +  
Sbjct: 453 RSKESEEDMVGKAIDYMVGEEAEEEMAATELTE-------------EEKKRQKMKTEIAE 499

Query: 534 MIEINEERFAKILRKWARSE 553
           ++    +  A+IL+ W   +
Sbjct: 500 LVNEKPDEVAQILKSWLLED 519


>gi|125525107|gb|EAY73221.1| hypothetical protein OsI_01094 [Oryza sativa Indica Group]
          Length = 575

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 121/507 (23%), Positives = 214/507 (42%), Gaps = 26/507 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +  ++L R++ L   + I + +   +AA      P Y  L+  L   D   I   LS  
Sbjct: 21  LQRFSALDRSKRLRFGAGIALLVATVVAAVVLNRQPDYKVLFSNLSDKDGGAIVAQLSTM 80

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           N+ ++ S+ G +I VP+  V   R+ LA QGLP   S +G+EL  + N FG+T F + + 
Sbjct: 81  NVPYKYSEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERLN 138

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188
             R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++             
Sbjct: 139 FQRGLEGELTRSIQALSSVQSARVHLALPNQNGFFREQQKPSASVLLSLYPGRFLDRTQL 198

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKSLSIVQAIQHEIEM 243
             I HLVA++VP +    V+VLD TGKLL+ +          I  + LS VQ I+ +   
Sbjct: 199 AGIVHLVASSVPEMSPSAVSVLDDTGKLLSQSPDTAAGSSGAIDAQQLSYVQQIEQQYTR 258

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET---- 299
            I   L   +G +N ++ V AE++    +     + P+   + S   S+    S      
Sbjct: 259 RILDILEPVVGKNNVKAQVTAEVDFSQSEQTSEQHRPNQTPDSSAVRSQQVVESSGGTQG 318

Query: 300 -SQPESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
              P        N P             +       +      K+E  +NYE++     T
Sbjct: 319 NQPPAGVPGAASNQPPQPSTAPINGANPAPTAGNGQQGQAAGSKRESITNYEVDKTVRVT 378

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQ-GKIDSYLAEINKIVSAATGINSRRGDTI 406
              +  ++R+S AVVVN   + E  G++          + ++  +V    G N  RGD++
Sbjct: 379 RAGSGAIKRVSAAVVVNYQAIAEAAGKAPQAKAFTPEQIEQMTALVRETIGYNKDRGDSV 438

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            I +  FL +             +++    +      + L   L++  L   A++ ++  
Sbjct: 439 NIMNTQFLVDNTPAVELPLWKQPEMIELAKSLGWPVGMSLFAALILLGLVRPAIKGMNQP 498

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGL 493
                    G+   +      ++    
Sbjct: 499 PAPAAAVAAGRLGDAKNAHLMSLDVAA 525


>gi|121608098|ref|YP_995905.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2]
 gi|121552738|gb|ABM56887.1| flagellar M-ring protein FliF [Verminephrobacter eiseniae EF01-2]
          Length = 562

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 125/566 (22%), Positives = 232/566 (40%), Gaps = 53/566 (9%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           +++  ++L R + + L + + + ++  +AA    + P Y  L+  L   D   I   LS+
Sbjct: 26  WWQRLSALNRAQRMRLGAGVALLVLAAVAALVLGHQPDYRVLFGNLSDKDGGTIVAQLSQ 85

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ +R+++ G +I VP+  V + R+ LA+QGLP   S  G+EL  + + FG+T F + +
Sbjct: 86  MNVPYRLAEGGGAILVPADRVHEVRLRLASQGLPK-GSVVGFELM-ESSKFGVTQFQERL 143

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187
              R LEGE+ R+IQ++S + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 144 NFRRGLEGELTRSIQALSPVQSARVHLALPEQNGFFREQQKPSASVLVSLYPGRFLERAQ 203

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMN 244
              I HLVAA+VP +    V+VLD TGKLL+ +     +  +  + L  VQ I+ +    
Sbjct: 204 LAGIVHLVAASVPEMAPSAVSVLDDTGKLLSRSPDGAADAEVNAQQLLHVQRIEQQYTRR 263

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DAQRSETSQ 301
           I   L   +G DN ++ V A+++    +     + P+ + E     S+   +++      
Sbjct: 264 ILDILEPVVGRDNVKAQVTADVDFTQTESSSEQFRPNQQPESGAVRSQQLLESRSGANKL 323

Query: 302 PESAVTVEQNMPH-----------VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           P        N P             +          E T+K+E  +NYE++         
Sbjct: 324 PTGIPGAVSNQPPVPSTAPINGPNPAPNAGGQQGPDEQTNKRESTTNYELDRTVRVVRGS 383

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              ++RLS AVVVN   + +  GR+  +      + ++  +V  + G +S RGD++ + +
Sbjct: 384 TGTVKRLSAAVVVNYQSVLD-KGRAVSRALTPEQIGQMTALVRESIGFDSARGDSVNLMN 442

Query: 411 MDFLENQLFNSGTVQV---SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
             F                + +D+       V   L   +  L + +  L   R +    
Sbjct: 443 TPFQLTVTPPEALAWWQRPALIDLAKTLAWPVGALLFAALVLLGLVWPVLRPPRAVAGRQ 502

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                                        D +  ++  +            +     +  
Sbjct: 503 L----------------------------DALEAETPERPALPAPIIRNEPLLPTPEQLR 534

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
                 +   N    A IL+ W   E
Sbjct: 535 LQEARALARENPAAVANILKTWLSGE 560


>gi|332284042|ref|YP_004415953.1| flagellar MS-ring protein [Pusillimonas sp. T7-7]
 gi|330427995|gb|AEC19329.1| flagellar MS-ring protein [Pusillimonas sp. T7-7]
          Length = 563

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 124/559 (22%), Positives = 214/559 (38%), Gaps = 78/559 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  LE  D   I  AL++ NI +++S  G++I VP + V + R+ LA Q
Sbjct: 41  MWARTPDYGVLFSNLEDRDGGAIVAALTQQNIPYQLSSTGNAILVPRNKVHEVRLQLAQQ 100

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP     +G+EL D+   FG + F ++I   RALEGE+  +IQS+  + +ARVH+ +P 
Sbjct: 101 GLPR-GGETGFELLDQT-RFGASQFTEQINYQRALEGELVSSIQSMHAVQSARVHLAIPR 158

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LV+++VP+L    V+V+D  G+LLT
Sbjct: 159 ESLFVRDRQPPTASVLLTLYPGRSLSDAQVAAITWLVSSSVPHLSADKVSVVDQNGRLLT 218

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
               E    G   +++  I+      I   +   +G  N R+ V A+++   ++    VY
Sbjct: 219 NLNGEAGADGTRRNLINDIEQRTVQRILTLITPLVGPGNVRAQVSADVDFAQREQTSEVY 278

Query: 279 DPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMPHVSD------------------ 317
            P+ K   +   S+    S       PE       N P ++                   
Sbjct: 279 RPNQKPGEAAVRSEQTSSSVQHNVLPPEGIPGALTNQPPLNAVAPIVTPPAPGAANPNDP 338

Query: 318 -------------------RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                                    +      + +   NYE++            L RLS
Sbjct: 339 NAAPDAAPDAAQNPNGNVLAGGENLQQGTGNSRSDATINYEVDRSITHVKDPVGSLRRLS 398

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
            AVVVN                 +  LA++N +V  A G +  RGDT+++ +  F ++  
Sbjct: 399 AAVVVNYR-----DVDGKATPLPEEELAKLNDLVKQAMGYSPARGDTLSVVNSQFSDD-- 451

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                  +    I   +   ++  ++  V  LLV  L +  L                  
Sbjct: 452 -TPAAAPIWQNPIYLEYAMQLLQYVLAGVALLLVWRLIIKPLL----------------- 493

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                    A             D  +++  + +   +        +++      M E +
Sbjct: 494 ---------ADNEASKAQRQALADEEDKNREAIAAAERRASEMTRYEENMATARAMAEKD 544

Query: 539 EERFAKILRKWARSEIEDR 557
               A +LR W  ++  +R
Sbjct: 545 PRAVAMVLRSWMENKDGNR 563


>gi|317012189|gb|ADU82797.1| flagellar MS-ring protein [Helicobacter pylori Lithuania75]
          Length = 567

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPVIDNATLSEKIMRKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|149194458|ref|ZP_01871555.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2]
 gi|149135633|gb|EDM24112.1| flagellar M-ring protein [Caminibacter mediatlanticus TB-2]
          Length = 559

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 134/564 (23%), Positives = 239/564 (42%), Gaps = 20/564 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-----HYDNLYVKL 55
           M       Q       L + +  I+   I+  +++      + +S      +Y  L+  L
Sbjct: 1   MNFEAIFKQIIDFFNQLNKKQKYIIIGSIISVVLIITFLIVYNSSTTKKESNYAILFENL 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           +  D   I   L +  I ++I +NG  I VP  +VGK R+ +AAQGLP SS   G+E+FD
Sbjct: 61  KPQDAALIVQYLDKKQIPYKIPENG-IIEVPKDIVGKVRLDVAAQGLPKSS-KVGFEIFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K + FG T F Q +  +RALEGE+A+TI+SI+ +  A+V+I +P    F +    PTAS+
Sbjct: 119 KNS-FGATDFEQRVKYLRALEGELAKTIESIAAVEEAKVNIAIPKESVFVENQTPPTASI 177

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
           +I+         K  E I+ LVAAAVP L   +V ++D  G  L  N        +L   
Sbjct: 178 LIKLRPNMTLTPKQIEGIKWLVAAAVPKLKPENVKIVDQYGNPLGENSEAVANSELLKAE 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           L   + ++  +E  I+  +A  +G  +   + V  +++    + +  +Y PD+ V     
Sbjct: 238 LLYKKRLEKALEDKISSLIAPIVGGKNKVVAKVSLDIDFSKVKSKATIYSPDNVVRSEQT 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           L +     +  +         N+  V   K    + ++  +K E  +NYEI+T       
Sbjct: 298 LEESRIGIKPKEVGGVPGAVSNIGPVQGTK--NNQIVDKYNKTETTTNYEISTTIKDIKD 355

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           D  K++R++ AVVV+     +  G+       +  +  I  +V  A GI+ +RGD+++++
Sbjct: 356 DYPKIKRITAAVVVDGYYKKDKDGKIKFVPLSEMQIKSIENLVKNAIGIDPKRGDSVSVS 415

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           S  F +       T     M ++S +     +   +L   +++       +         
Sbjct: 416 SFQFNQPTSNAPQTPVGKVMSMVSMYLGPFESIFKYLFLAIVLFVFYKKVINPFTQKMLE 475

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              +               + +       +      Q   S   N +        +    
Sbjct: 476 TPVKEEEPIKEEIHIDEEEIESTYDKIKELKEKVEQQLGISGEINEEE----LKYEVLLE 531

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           R+  M+E N E+ AK+L    + E
Sbjct: 532 RVTKMVEDNPEQVAKVLENLLKEE 555


>gi|308182520|ref|YP_003926647.1| flagellar MS-ring protein [Helicobacter pylori PeCan4]
 gi|308064705|gb|ADO06597.1| flagellar MS-ring protein [Helicobacter pylori PeCan4]
          Length = 567

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPRDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|91776330|ref|YP_546086.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT]
 gi|91710317|gb|ABE50245.1| flagellar M-ring protein FliF [Methylobacillus flagellatus KT]
          Length = 586

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 125/554 (22%), Positives = 218/554 (39%), Gaps = 48/554 (8%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
            +    +   P Y  L+      D   I  AL + N+ +RI+D GS+I VP++ V   R+
Sbjct: 46  MVVFWLWSQKPEYRVLFSSYSDKDGGAIVAALEQMNVPYRIADGGSAILVPANHVHDVRL 105

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            LA+QGLP    N G+EL  +   FG++ F++++   R LEGE+ RTIQSI  + AAR+H
Sbjct: 106 RLASQGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERTIQSIGAVQAARIH 163

Query: 156 IVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
           + MP    F +   +PTASVM+          +   AI HLVA++VP L   +VTV+D  
Sbjct: 164 LAMPKPTVFTRDQQKPTASVMLNLHPGRALDQRQVSAIVHLVASSVPELPTSNVTVVDQN 223

Query: 214 GKLLTANEMER----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
           G LL+ N  +      +    L  V  +Q  I   +   +A  +G  N  +   AE++  
Sbjct: 224 GNLLSDNGKDAGNHYQLDPTQLKYVDELQQNIARRVESIIAPLVGAKNVHAEASAEVDFS 283

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSET--------------SQPESAVTVEQNMPHV 315
             +    +Y P+   + +   S     S+T              +QP +  T     P  
Sbjct: 284 MVEQAAEIYKPNQAPDSAAIRSSQTNESQTLPGQGVGGVPGALTNQPPAPATAPIVAPGT 343

Query: 316 SDRKVPLPRSLEN---------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
                     +                   ++   +NYE++            ++RL++A
Sbjct: 344 EPTTTTNANVVTTTTTTPPGTTVTTPVMNSERNTTTNYEVDKTIRYQQQPMGGIKRLTVA 403

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VVVN  +  +  G+   +   D    +I+ +   A G N  RGD++++ +  F+      
Sbjct: 404 VVVNHKQEVDAQGKVITRPLTDDEKTQISDLAKQAMGFNEERGDSLSVVNGSFMPEIAEA 463

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
              V +        +       L   +  L++  L    LR L      ++ + G  + L
Sbjct: 464 FPEVPLWKDP---DNIEMAKEWLKNGLVLLVLYMLYRRFLRPLLRKLSPEEEKKGELAEL 520

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                 + V+        ++                        +++      + + N +
Sbjct: 521 DEEDQDAIVS--------LSEGEGGMTGEEAGEEEGGAPAERTYQKNLESARKLAKENPK 572

Query: 541 RFAKILRKWARSEI 554
             A I+  W  S  
Sbjct: 573 VVASIVTNWVNSNE 586


>gi|210134543|ref|YP_002300982.1| flagellar MS-ring protein [Helicobacter pylori P12]
 gi|210132511|gb|ACJ07502.1| flagellar basal-body M-ring protein [Helicobacter pylori P12]
          Length = 567

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 118/576 (20%), Positives = 234/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSRD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLNPDMKLSPTQILGIKNLIAAAVPKLTIDNVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMVPVIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI    T+
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSTK 566


>gi|317406225|gb|EFV86471.1| flagellar M-ring protein FliF [Achromobacter xylosoxidans C54]
          Length = 558

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 121/551 (21%), Positives = 208/551 (37%), Gaps = 75/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            + + P Y  L+  L+  D   I  AL   N+ ++ +D G+++ VP+  V  AR+ LA+Q
Sbjct: 45  MWSSEPKYKVLFSNLDDRDGGAIVTALGTMNVPYKYNDTGTALLVPADRVYDARLQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+S+  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELMDNA-RFGASQFAEQINYQRGLEGELARSIESMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              AI  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRERQPPTASVLLNVYPGRSLSDAQVSAISWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 ANEMERN-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A   E   +    + +V+  +      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APTGEGRGMDADQMRMVRETEQRTVERILTILNPLVGPGNVHAQASAEMDFSRREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSLEN------ 328
           Y P+ +  ++   S+    S        +       N P  + +                
Sbjct: 283 YRPNQEPGQAAIRSQQTSESNQRGINPAQGVPGALSNQPPANAQAPIANPPQTQPPRPGQ 342

Query: 329 -------------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                    +D+++  +NYE++            L+RLS+AVVV
Sbjct: 343 PQQQGQQQQQQTATGAGAQGAGGTVSDRRDATTNYEVDRTISHIKQPVGMLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N  R          Q      L+++  +V  A G +  RGD++ + +  F +        
Sbjct: 403 NYVR----DKDGEPQALPPEELSKLTNLVREAMGYSESRGDSLNLVNSQFND----GPPA 454

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           V +     +   F T++  LV  V  L         +RR          +          
Sbjct: 455 VPMWRDPEMISLFKTILAWLVGGVLAL----WLYRKVRRSVGDYLYPPVDPEVAEAERIE 510

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
               A                        ++L     +   + +  R   M   +    A
Sbjct: 511 AQREA------------------------QDLARAKETDRYQDNLERARTMANKDPRAVA 546

Query: 544 KILRKWARSEI 554
            +LR W   + 
Sbjct: 547 MVLRTWMTKDE 557


>gi|50120659|ref|YP_049826.1| flagellar MS-ring protein [Pectobacterium atrosepticum SCRI1043]
 gi|49611185|emb|CAG74631.1| flagellar M-ring protein [Pectobacterium atrosepticum SCRI1043]
          Length = 574

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 117/586 (19%), Positives = 234/586 (39%), Gaps = 63/586 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  +   D   I   L
Sbjct: 13  NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R +++G +I +P++ V + R+ LA  GLP   +  G+EL D+   FG++ F +
Sbjct: 73  TKLNIPYRFAESGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           +I   RALEGE++RTI+++  +  ARVH+ +P    F +    P++SV +          
Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKSPSSSVTLTLQPGRALDE 190

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               +I ++V+++V  L   +VTV+D TG+LLT        +    L     ++   +  
Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +A  +G+ N  + V A+++   ++  +  Y P+   +++   S+   +SE     +
Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQKGGPN 310

Query: 305 AVTVEQNMPHVSDRKVPLPRS------------------------------------LEN 328
              V   + +        P +                                      +
Sbjct: 311 VGGVPGALTNQPAPAPTAPIATPPNNANANANNQAGQQNQNNAAGAQANAANTNTTIQTS 370

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             + +  +NYE++   + T H    ++RLS A++VN                 +  + +I
Sbjct: 371 NVRNDATTNYEVDKTILHTKHSTGGVKRLSAAIIVNYQ---PPGEDGKPVALTEDQIKQI 427

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G ++ RGDT+ + +  F+++   +               F  ++ A  +L+ 
Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            ++   L    +R        ++      + LS               DN  + + +   
Sbjct: 484 LIVAWILWRKLVRPQLQKKAQQQEAALAAATLS------------QGTDNDVMVNLSSSE 531

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               R  Q R+N+ +      R+  M E +    A ++R+W  +E+
Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574


>gi|33601565|ref|NP_889125.1| flagellar MS-ring protein [Bordetella bronchiseptica RB50]
 gi|33576001|emb|CAE33081.1| flagellar M-ring protein [Bordetella bronchiseptica RB50]
          Length = 558

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 116/551 (21%), Positives = 205/551 (37%), Gaps = 75/551 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R SDNGS++ VP+  V   R+ LA+Q
Sbjct: 45  MWSREPDYKVLFSNLDDRDGGAIVSALGQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I+++  +  ARVH+ MP 
Sbjct: 105 GLPRGGS-VGFELLDNT-RFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              A+  LVA++VP L   +V+++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS 222

Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A     R +    L  V+ ++      I   L   +G  N  +   AE++   ++    V
Sbjct: 223 APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------- 320
           Y P+ +  ++   S+    S  + P   +       N P  + +                
Sbjct: 283 YRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQQQ 342

Query: 321 -----------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                                +  + D+ +   NYE++            L+RLS+AVVV
Sbjct: 343 QQQRAQQQAAGATTTQTQPGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAVVV 402

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N             +      L ++  +V  A G +  RGD++ + +  F +  +     
Sbjct: 403 NYL----PNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW 458

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                          +I   +  +  L++ F     +R +       +            
Sbjct: 459 RDP--------ELIAMIKTALGWMFGLILAFWLYRKIRPVVTDYFYPQV----------- 499

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                        D     +  Q+    ++           + +      M   +    A
Sbjct: 500 -------------DPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAVA 546

Query: 544 KILRKWARSEI 554
            +LR W   + 
Sbjct: 547 MVLRSWMSKDE 557


>gi|260429390|ref|ZP_05783367.1| flagellar M-ring protein FliF [Citreicella sp. SE45]
 gi|260420013|gb|EEX13266.1| flagellar M-ring protein FliF [Citreicella sp. SE45]
          Length = 541

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 130/553 (23%), Positives = 231/553 (41%), Gaps = 14/553 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q  +    LG  R +I+ +  +  I+  +       +P    LY  LE      +  A
Sbjct: 1   MQQLAQIWEGLGARRRIIVLAATVGVILAVLTMARMAGTPSMALLYAGLENGAAGEVVEA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + +   G +I VP       R+ LA++GLP++S N GYEL D ++ FG TS M
Sbjct: 61  LEQRGVVYEVR--GGAIFVPEMERDALRMTLASEGLPANS-NKGYELLDGLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   + +ARVHI       F++      +  +          
Sbjct: 118 FDAAYWRAKEGELARTIVASPYVASARVHIANSSANPFQRDVQPSASISVTSTGEVLSPA 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A A+++LVA+AVP L    V V+D  G L+ A +   +         +     +   + 
Sbjct: 178 QARALKYLVASAVPGLVPEQVAVIDGKGGLIGAEDEVGSGPT-----AEDKADLLRDRVQ 232

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G+ N    V  +   +++ IR+  +DP+++V  S    + +  S+ +     V
Sbjct: 233 RLVDARVGLGNAVVEVSVDTVTESETIRQRQFDPENRVVISTDTEEQSSTSQDTG-SGNV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S  N  +  E+ NYE++      T     ++RL++AV+VN  
Sbjct: 292 TVASNLPDGQAGGGDSSSSQSNETR--ERVNYEVSETMREVTRVPGAIKRLTVAVLVNGT 349

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
             T   G        D+ L  +  +V++A G   +RGD ITI S+ F   +   +G ++ 
Sbjct: 350 YDTAADGTQLFVPLPDNELTALRDLVASAVGFEEQRGDEITIRSLPFERPEGLGTGPIEP 409

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            +   L      +I   V  +  L++    +  +            E G  ++ S   + 
Sbjct: 410 DWF-ALQLDPMMLIQMAVLALVALILGLFVVRPILTGSARAALPGAEGGALALPSGGTVL 468

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI--NSYVSKQSDLRLLHMIEINEERFAK 544
                          D  + + F         +  +S V++    RL  +IE  +    +
Sbjct: 469 DGEIDDGDEGFAPLADLGSGEGFGGGFGGMGMVDFDSPVAEDPVDRLRGLIEQRKSETVE 528

Query: 545 ILRKWARSEIEDR 557
           ILR W   + E +
Sbjct: 529 ILRSWLDEKEEAQ 541


>gi|317008990|gb|ADU79570.1| flagellar MS-ring protein [Helicobacter pylori India7]
          Length = 567

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIATGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTDNVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGASKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566


>gi|308184148|ref|YP_003928281.1| flagellar MS-ring protein [Helicobacter pylori SJM180]
 gi|308060068|gb|ADO01964.1| flagellar MS-ring protein [Helicobacter pylori SJM180]
          Length = 567

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+  
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEG 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566


>gi|110632647|ref|YP_672855.1| flagellar MS-ring protein [Mesorhizobium sp. BNC1]
 gi|110283631|gb|ABG61690.1| flagellar M-ring protein FliF [Chelativorans sp. BNC1]
          Length = 545

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 225/552 (40%), Positives = 339/552 (61%), Gaps = 13/552 (2%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +QL    ++  +LG  R+ ++  V+ + + +      ++N P Y+ LYV LE SDVN+I 
Sbjct: 3   EQLRTIVENLRALGPRRLAMMGGVLALTLAVVTGGAIYLNRPAYETLYVGLERSDVNQIG 62

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
           + L EA I F +  +G+++ VP+    +AR+ LA +GLP SS+N+GYELFD V S GLT+
Sbjct: 63  LVLGEAGIRFDVVSDGTAVLVPTGKTAEARMLLAEKGLP-SSANAGYELFDTVGSLGLTT 121

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
           FMQE+TRVRALEGEIARTI+SI+GI AARVHIVMP+ G+FR+ G  P+ASV+IR      
Sbjct: 122 FMQEVTRVRALEGEIARTIRSIAGIRAARVHIVMPERGNFRREGQEPSASVVIRTSGIDG 181

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIEM 243
              A +IR+LVAAAVP L    VTVLDS+G LL A +   N   +  + I + ++ ++E 
Sbjct: 182 AAKAASIRYLVAAAVPGLSAEKVTVLDSSGMLLAAGDDPANNTAQRSIGIERTVEAQVEE 241

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
           NI +ALA +LG DNFR++V AE+N DT+Q+ E+++DPDS+VERS+++ + A  +      
Sbjct: 242 NIRRALAPYLGPDNFRASVKAEVNTDTRQVEEVIFDPDSRVERSVQIVRTADSATRETAA 301

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           +  TV QN+P        LPRS E ++++EE +NYE+NTK IAT+ + Y++ RLSIAVVV
Sbjct: 302 TPTTVLQNLPQEEPAPAELPRSSEESERREETTNYELNTKRIATSSNGYQVTRLSIAVVV 361

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N+GRL  +LG +A    + + + EI  +V++A G+N  RGD + + +++F++        
Sbjct: 362 NEGRLAAILGDNAAPDALQTRIREIETVVASAAGLNETRGDVLNVAAVEFVDGLDGVEMA 421

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                   L RH  T+INAL F++    +T+ GL  L          +    G+ I    
Sbjct: 422 EPGPL-AALGRHSGTMINALAFVLAAFFITWFGLRPLATALTRGPEIEASAAGEEI---- 476

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                  +    ++ +AL + N    S   N + ++    + Q+   L  M+++NEER A
Sbjct: 477 ----QALSQEGADERLALTAGNGVQSSEEANDEPQLKIKPAPQAL--LARMVDLNEERTA 530

Query: 544 KILRKWARSEIE 555
            ILRKWAR+E+E
Sbjct: 531 DILRKWARAEVE 542


>gi|270262379|ref|ZP_06190651.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13]
 gi|270044255|gb|EFA17347.1| flagellar M-ring protein FliF [Serratia odorifera 4Rx13]
          Length = 567

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 129/580 (22%), Positives = 237/580 (40%), Gaps = 58/580 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                    L     + L       I + +A   +  SP Y  LY  L   D   I   L
Sbjct: 13  NGLQALWDRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNLNDRDGGAIVTQL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++NG+++ +P+  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 73  TQMNIPYRFAENGAALMIPADKVHETRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
           +I   RALEGE++RTI+S+  +  ARVH+ +P    F +    P+ASV +          
Sbjct: 131 QINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTLTLQPGRALDD 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               AI ++V+++V  L  G+VTV+D  G+LLT ++     +    L     +++  +  
Sbjct: 191 GQINAIVYMVSSSVAGLPPGNVTVVDQAGRLLTQSDGAGRDLNAAQLKYANEVENRYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE------ 298
           I   LA  +G  N  + V A+++  T++  +  Y P+    ++   S+   +SE      
Sbjct: 251 IEAILAPMVGNANVHAQVTAQIDFATREQTDEEYQPNQLPNQAAVRSQQMSQSEQLGGPQ 310

Query: 299 --------TSQPESAVTVEQNMP----------------HVSDRKVPLPRSLENTDKKEE 334
                   ++QP +  T                        + R      S     +++E
Sbjct: 311 VGGVPGALSNQPSAPATAPIETAKTNAAAGNNANGAKPNAAATRSTAANGSGPQNTRRDE 370

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
            +NYE++     T      ++RLS+AVVVN      V             LA+I  +V  
Sbjct: 371 TTNYEVDRTIRHTQQKAGTVQRLSVAVVVNYR---GVDKDGKPLPMSKEQLAQIESLVRE 427

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           + G +S RGDT+ + +  F + ++                    + +A  +L+  L    
Sbjct: 428 SMGFSSSRGDTLNVVNTPFTDTEVTGGELP----FWQTQNFIDRLFDAGRYLLVLLAAWL 483

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
           L    +R       A +      +       +               +  + +  +  R 
Sbjct: 484 LWRKLVRPQLQNRQAVQQAALAAANAPMAKPADN-------------NKPSNEELAQHRK 530

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            Q R+++ V  Q   R+  + + +    A ++R+W  +E+
Sbjct: 531 SQQRVSAEVQSQ---RIRDLADKDPRVVALVIRQWMSNEL 567


>gi|317153718|ref|YP_004121766.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2]
 gi|316943969|gb|ADU63020.1| flagellar M-ring protein FliF [Desulfovibrio aespoeensis Aspo-2]
          Length = 531

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/557 (21%), Positives = 227/557 (40%), Gaps = 37/557 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +   +     +     + +++  + +  ++ F    +++N P Y  L   L   D +R
Sbjct: 5   IAEYWTKIHGFWSDRTAAQRILIGGLAVSVVIAFALMIYWMNKPDYKVLMTNLYPEDASR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L      + + DNG +I VP+  V + R+ +A +G        G+E+FD V   G 
Sbjct: 65  IVGMLQAEKEQYVLDDNGKTILVPADRVYELRLKVAGEG-NLHGQGIGFEIFDNVQ-IGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-- 180
           T F+Q I   RAL+GE++RTI     I  ARVH+V+P    F +    P+AS++++    
Sbjct: 123 TDFVQHINFQRALQGELSRTITEFPQIEQARVHLVIPKKSLFIEDQMPPSASIILQLKDN 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237
                   + + +LV+ AV  L+  ++TV D  G+ L   E +     +    L     I
Sbjct: 183 AKLAANEVQGVVNLVSMAVEGLEPKNITVTDMKGRPLYTPEDDSGGLALSNTQLEYKADI 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           ++  +  I + L   +G +   + V A+L+   + IR+  YDPD  V RS   S++    
Sbjct: 243 ENTTQRRIMELLGPVVGPEKVIARVNADLDFSQKTIRKESYDPDGSVVRSETRSEETTAG 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             S             +         R+ +++ ++   +N+EIN +         +L+RL
Sbjct: 303 AASLAGGEPDA-----NFRGDGFTGTRTTQDSTRESRTTNFEINKQEENIIAPVGELKRL 357

Query: 358 SIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           S+AV+V+    TE   G+S    +    L  I  +++ A G +S RGD+I ++++ F E 
Sbjct: 358 SVAVIVDGTWQTEEDTGKSVYVPRSAEELERIKNLIAGAVGFDSVRGDSIEVSNISFGEP 417

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            L++  ++  + ++                              +   N        +  
Sbjct: 418 SLYDGDSLMRTMLEYAQ------------------------RLGKPFLNGLLIFLFLILV 453

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
              +    I   V    +        S    +     + ++   S   + +    + + +
Sbjct: 454 VRPVIMALIRPRVAEQEIEEMAGLPGSQRLALEEEEIDEEAMDMSRRLENAKNHAVQLSD 513

Query: 537 INEERFAKILRKWARSE 553
            N ++   +L+ W   E
Sbjct: 514 DNMDQAVHLLKSWLAQE 530


>gi|85858817|ref|YP_461019.1| flagellar M-ring protein [Syntrophus aciditrophicus SB]
 gi|85721908|gb|ABC76851.1| flagellar M-ring protein [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 132/557 (23%), Positives = 230/557 (41%), Gaps = 57/557 (10%)

Query: 4   LDQLLQFFKSGTS----LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           ++  L+F+++       L   R   L  V  + + +  A  +F N P Y  L+  L   D
Sbjct: 1   MNSFLRFYENLRQSFVELPPARKWSLLFVAGMTLSVLAAMVYFANRPEYKVLFSHLSSED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
            + I   L E  I + I+  G +I VP+  V + R+ LA  GLP      G+E+FD+   
Sbjct: 61  ASSILAKLQEKKISYEINSAGDTIFVPAEKVSELRLELAGSGLPQGGG-VGFEIFDQKT- 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T F Q++   RAL+GE+ RTI+ +  I ++RVHI +P    F     +PTASV ++ 
Sbjct: 119 LGATEFEQQLNYRRALQGELGRTIKGLEEIESSRVHIALPRESLFVSEEKKPTASVTLKL 178

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234
                      E I HLVA++V  L+ GDV ++D+ G +L+  + E     + G  +   
Sbjct: 179 KPGRSLSSSQIEGIAHLVASSVEGLNAGDVIIVDNKGNILSKLKGESGLSGLSGSQIEFQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++ +    I   L   +G       V A+L+    +  E  YDP+S V RS +   + 
Sbjct: 239 RNLEKDTAARIQSLLENVVGQGKAVVRVAADLDFRMTEKTEESYDPESPVVRSTQKQSEK 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             +                                +K +E  NYEIN     T     ++
Sbjct: 299 SAT----------------------PGKADQSTGQEKLDEIINYEINKTVSKTVMPVGEI 336

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            +LSIAV+V+   + +  G+   Q +    +  I ++V  + G ++ RGD +T+T+M F 
Sbjct: 337 RKLSIAVLVDGTYVKDKQGKEIYQPRSKKEIESIEELVRTSAGFSTARGDQVTVTNMPFK 396

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           +    +       F + +S +F                       L +   +        
Sbjct: 397 KLDTEDMTGGNGWFGENISTYF----------------------PLIKYLLLLVVVVLVF 434

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                     I+  VT  +M  + +  D       + S +L S     +++     +  M
Sbjct: 435 FFVIRPLIRGITGQVTEKVMEKEALPEDIIELTGETQSLDLLSVKERELTEIEV--VKKM 492

Query: 535 IEINEERFAKILRKWAR 551
              + + FA++LR W +
Sbjct: 493 AVEDSKSFAELLRNWLK 509


>gi|227112541|ref|ZP_03826197.1| flagellar MS-ring protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 574

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/586 (19%), Positives = 232/586 (39%), Gaps = 63/586 (10%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  +   D   I   L
Sbjct: 13  NSFGEILNRLRANPKIPLLIAAAATIAIVVALTLWAKGPDYRVLYSNINDRDGGAIVGEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI +R ++NG +I +P++ V + R+ LA  GLP   +  G+EL D+   FG++ F +
Sbjct: 73  TKLNIPYRFAENGGAIMIPAANVYETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK- 186
           +I   RALEGE++RTI+++  +  ARVH+ +P    F +    P++SV +          
Sbjct: 131 QINYQRALEGELSRTIETLGPVQNARVHLAIPKPSLFVREQKAPSSSVTLTLQPGRALDE 190

Query: 187 -SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               +I ++V+++V  L   +VTV+D TG+LLT        +    L     ++   +  
Sbjct: 191 GQINSIVYMVSSSVAGLPPDNVTVVDQTGRLLTQAGGSGRDLNAAQLKYSNEVEAMYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +A  +G+ N  + V A+++   ++  +  Y P+   +++   S+   +SE     +
Sbjct: 251 IESIIAPMVGMGNVHAQVTAQIDFSAREQTDEQYQPNQPPDKAAVRSQQTSQSEQRGGPN 310

Query: 305 AVTVEQNMPHVSDRKVPLPRS------------------------------------LEN 328
              V   + +        P +                                      +
Sbjct: 311 VGGVPGALTNQPAPAPTAPIATQPNNANANANNQAGQQNQNNAAGAQANAANANTVIQTS 370

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
             + +  +NYE++   + T H    ++RLS AV+VN                 +  + +I
Sbjct: 371 NVRNDATTNYEVDKTILHTKHSTGGVKRLSAAVIVNYQ---PPGEDGKPVALTEEQIKQI 427

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
             +   A G ++ RGDT+ + +  F+++   +               F  ++ A  +L+ 
Sbjct: 428 ETVAREAMGFSAERGDTLNVVNTPFMDSTDGSGELP----FWQKQAFFDLLMEAGRWLLV 483

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            ++   L    +R        +               + A        D+  + + +   
Sbjct: 484 LIVAWILWRKLVRPQLQRKTQQ------------QEAALAAAALSQGADSDVMVNLSSSE 531

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               R  Q R+N+ +      R+  M E +    A ++R+W  +E+
Sbjct: 532 VEQQRKSQQRVNAEMQS---NRIREMAENDPRVVALVIRQWMSTEL 574


>gi|222112250|ref|YP_002554514.1| flagellar m-ring protein flif [Acidovorax ebreus TPSY]
 gi|221731694|gb|ACM34514.1| flagellar M-ring protein FliF [Acidovorax ebreus TPSY]
          Length = 564

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 130/566 (22%), Positives = 227/566 (40%), Gaps = 42/566 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           + +   SL R   L L  V  + +   +AA F+   P Y  L+  L   D   I   LS+
Sbjct: 19  WPQRLASLDRAARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQ 78

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ ++ G +I VP+  V   R+ LA QGLP   S +G+EL  + N FG+T F + +
Sbjct: 79  MNVPYKYTEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERL 136

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187
              R LEGE+ R+IQ+++ + +ARVH+ +P    F +   +P+ASV++            
Sbjct: 137 NFQRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQ 196

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNI 245
              I HLVA++VP L    V+VLD TGKLL+         +  + L+ VQ I+ +    I
Sbjct: 197 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRI 256

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----SQ 301
              L   +G +N ++ V AE++ +  +     + P+   + S   S+    S        
Sbjct: 257 LDLLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQP 316

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATT 348
           P        N P  +        +   T              K+E  +NYE++  +  T 
Sbjct: 317 PTGVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTR 376

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                ++R++ AVVVN   ++E  G+ A ++      L ++  +V    G N  RGD++ 
Sbjct: 377 GGAGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVN 436

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  FL  ++   G + +           T+   L   +   ++    L    +     
Sbjct: 437 LMNAPFLVEEVP-PGELPLWKQPETIELAKTLGWPLGISLAAAILLLGLLRPALKARARA 495

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                +    + LS          GL                  +      +     +  
Sbjct: 496 VQMAAQQPAGAQLSAIASEELQRPGL-----------------PAPAQPEELQPTAEQLR 538

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
                 +   N    A IL+ W   +
Sbjct: 539 LEEARQLARDNPVAVASILKTWVNGD 564


>gi|237752970|ref|ZP_04583450.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375237|gb|EEO25328.1| flagellar basal-body m-ring protein flif [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 572

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 116/573 (20%), Positives = 229/573 (39%), Gaps = 29/573 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS--------PHYDNLY 52
           M +     Q       L + + +++ + I+V +    A   + ++        P Y  L+
Sbjct: 1   MDLKALFEQIRNLYKKLNKKQKIVILATIVVVVGFISALIVWNSTSNKTGILYPGYAVLF 60

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112
             +   D   I   L +  I ++I  + ++I +P   V + R+ LA+ G+P SS   G+E
Sbjct: 61  EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQEFVYEERMKLASNGIPKSS-KIGFE 118

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +FD  + FG T F Q I  +RA+EGE+ARTI+S++ I  A VH+  P+   F      PT
Sbjct: 119 IFDTKD-FGATDFDQRIKYLRAIEGELARTIESLAPIQKATVHLAQPEKTVFISEQTPPT 177

Query: 173 ASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNIL 227
           ASV++  +       K    I+++V++AVPNL + +V V++  G+ L+  +     R + 
Sbjct: 178 ASVVLVFKPAQTLTPKQISGIKNIVSSAVPNLTIQNVEVVNEKGEPLSELDELGGARELA 237

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVER 286
              L      +H +E  I   L+   G      + V AE +   ++  +  YDP++ V  
Sbjct: 238 VAQLRYKTDFEHALEEKIVNILSPIAGGREGVVAKVTAEFDFAQKESTQEYYDPNNVVRS 297

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
              L +  +     +      V  N+  V         + E  +K +  +N+EI+     
Sbjct: 298 IQDLEEKREGFRPKEIGGVPGVVSNIGPVQGL--EDDNTKEKYEKTQNTTNFEISKTISN 355

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402
              +   + RLS AVVV+     E+     +Q       +  + +I+ +V  A G N++R
Sbjct: 356 IKGEFATIRRLSAAVVVDGRYEKELNEEGVEQLKYIALNEEDMTKISALVRQAIGYNNQR 415

Query: 403 GDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           GD +++++         F + T    F++  ++     +  L +++  +++ F     + 
Sbjct: 416 GDEVSVSNFQLNGQLSGFKARTPLERFLEASAKLLEPFMPLLKYVLVGIILFFFYKKVIV 475

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                    K +   +                  N+            +         + 
Sbjct: 476 PFSERMLEAKADEEEELESLIKIDEDEEENSDRLNEMRRRIEDQLGFGNGGNE-----DE 530

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                   ++  +        A + +     E+
Sbjct: 531 IKYNVLLEKIKELTMEKPAELANLFQTLVHDEL 563


>gi|308273184|emb|CBX29787.1| hypothetical protein N47_F14820 [uncultured Desulfobacterium sp.]
          Length = 520

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 131/558 (23%), Positives = 231/558 (41%), Gaps = 46/558 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D  +QF     SL   + + ++  +L+ I  F       N   Y  L+  L   D   
Sbjct: 1   MNDSAVQFLNFIKSLPLAKKITISVTVLLLIAAFAVMFMLSNQVDYRVLFNNLSAQDAGA 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E NI ++I   GS I VPS  V + R+ +   GLP      G+E+FDK + +  
Sbjct: 61  IIEKLKEKNIPYKIEGGGSLILVPSDQVYELRLKMVGDGLPRDG-QIGFEIFDKTD-YKT 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q +   RAL+GE+ARTI     + ++R+ IV+P    F +     +ASV++   + 
Sbjct: 119 TQFVQSLNYQRALQGELARTINCFDEVKSSRIFIVLPKETLFAEDTKPASASVLLDLKSN 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQ 238
              +   AI HLVA+AV  L+  +VTV+D+ G+++      N+    +    L     I+
Sbjct: 179 LPPERLSAIVHLVASAVEGLEPEEVTVVDTKGRVIFKGGNGNQTNTFLNNSQLDYKSKIE 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            EI  N+   L   +G  N    V A+++ +   + E  YDP + V RS R  +++ R+ 
Sbjct: 239 SEISRNVQSMLEGIIGSGNAIVRVTADIDFNKTSMNEEEYDPAAAVVRSKRDIEESFRAG 298

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +  ESA ++      V   +           KK+  +NYEIN  +   +     ++RLS
Sbjct: 299 NASSESAPSLINQRAGVIPAESVDQNGKR---KKDTLTNYEINKVTRVISKPAGTIKRLS 355

Query: 359 IAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +A V++    T    +   +     + D  L +   IV  A G N  R D I+++S+ F 
Sbjct: 356 VAAVIDGRYETVKSADGTDKRNYIPRTDEELKKFEDIVKGAMGYNEDREDKISVSSIPFS 415

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           E+   +       F            N+L+     + V F+ +  L         ++   
Sbjct: 416 ESLPGDIQMASEPFD--FMALLKDYKNSLINFCLLIAVFFVLVKPLINTLKNMPKEQF-- 471

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                                         N      +    +++    +K    +++ +
Sbjct: 472 -----------------------------VNVKEIPAAVQSNAQLPGVKTKGQIEKVIEI 502

Query: 535 IEINEERFAKILRKWARS 552
            + N E+  +++R W   
Sbjct: 503 SKSNPEKTEQLIRGWMNE 520


>gi|121596094|ref|YP_987990.1| flagellar M-ring protein FliF [Acidovorax sp. JS42]
 gi|120608174|gb|ABM43914.1| flagellar M-ring protein FliF [Acidovorax sp. JS42]
          Length = 564

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/566 (22%), Positives = 227/566 (40%), Gaps = 42/566 (7%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           + +   SL R   L L  V  + +   +AA F+   P Y  L+  L   D   I   LS+
Sbjct: 19  WPQRLASLDRPARLRLGVVAALLVAALLAAFFYSRQPDYRVLFSGLNDKDGGAIVAQLSQ 78

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ ++ G +I VP+  V   R+ LA QGLP   S +G+EL  + N FG+T F + +
Sbjct: 79  MNVPYKYTEGGGAILVPAERVHDVRLRLATQGLPK-GSVTGFELM-ETNRFGVTQFQERL 136

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187
              R LEGE+ R+IQ+++ + +ARVH+ +P    F +   +P+ASV++            
Sbjct: 137 NFQRGLEGELTRSIQALASVQSARVHLALPQQNGFFREQQKPSASVLLSLYPGRFLDRAQ 196

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNI 245
              I HLVA++VP L    V+VLD TGKLL+         +  + L+ VQ I+ +    I
Sbjct: 197 LAGIVHLVASSVPELAPSAVSVLDDTGKLLSQTPDMAGAGVDAQQLAYVQQIEQQYARRI 256

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----SQ 301
              L   +G +N ++ V AE++ +  +     + P+   + S   S+    S        
Sbjct: 257 LDLLEPVVGKNNVKAQVTAEVDFNQTESTVEQHKPNLAPDASAVRSQQVVESGGTPGAQP 316

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENT-------------DKKEEQSNYEINTKSIATT 348
           P        N P  +        +   T              K+E  +NYE++  +  T 
Sbjct: 317 PTGVPGAVTNQPPQASAAPINGANPAPTAAGGAPGSGAAGQAKRESITNYEVDKTTQVTR 376

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                ++R++ AVVVN   ++E  G+ A ++      L ++  +V    G N  RGD++ 
Sbjct: 377 GGAGAIKRVNAAVVVNYQPVSEGPGKPAVNKALTPEQLEQMTALVRETIGFNKERGDSVN 436

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + +  FL  ++   G + +           T+   L   +   ++    L    +     
Sbjct: 437 LMNAPFLVEEVP-PGELPLWKQPETIELAKTLGWPLGISLAAAILLLGLLRPALKARARA 495

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                +    + LS          GL                  +      +     +  
Sbjct: 496 VQMAAQQPAGAQLSAIASEELQRPGL-----------------PAPAQPEELQPTAEQLR 538

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
                 +   N    A IL+ W   +
Sbjct: 539 LEEARQLARDNPVAVASILKTWVNGD 564


>gi|188527156|ref|YP_001909843.1| flagellar MS-ring protein [Helicobacter pylori Shi470]
 gi|188143396|gb|ACD47813.1| flagellar MS-ring protein [Helicobacter pylori Shi470]
 gi|308061699|gb|ADO03587.1| flagellar MS-ring protein [Helicobacter pylori Cuz20]
          Length = 567

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQRKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIVLKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|242310458|ref|ZP_04809613.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT
           98-5489]
 gi|239522856|gb|EEQ62722.1| flagellar basal-body m-ring protein flif [Helicobacter pullorum MIT
           98-5489]
          Length = 575

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 117/573 (20%), Positives = 227/573 (39%), Gaps = 30/573 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--------SPHYDNLY 52
           M +     Q       L + + +++ + I+  +    A   + +         P Y  L+
Sbjct: 1   MDLKALFEQIRNLYKRLNKKQKIVILATIVAIVGFISALIVWNSINNKAGVLYPGYAVLF 60

Query: 53  VKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYE 112
             +   D   I   L +  I ++I  + ++I +P  +V + R+ LA+ G+P SS   G+E
Sbjct: 61  EGVSPEDGALIIQQLQQDKIPYKIPKD-NTILIPQELVYEERMKLASNGIPKSS-KVGFE 118

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +FD  + FG T F Q I  +RA+EGE+ARTI+S+S I  A VHI  P+   F      PT
Sbjct: 119 IFDTQD-FGATDFDQRIKYLRAIEGELARTIESLSPIQKATVHIAQPEKSVFVSEQTPPT 177

Query: 173 ASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNIL 227
           ASV++  +       K    I+++V++A+PNL + +V V++  G+ L+  +     R + 
Sbjct: 178 ASVVLAFKPAQTLTPKQISGIKNIVSSAIPNLTIENVEVVNEKGEPLSELDELGGARELA 237

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSKVER 286
              L      +  +E  I   LA   G      + V AE +   ++  +  YDP++ V  
Sbjct: 238 AAQLRYKSNFEQSLEEKIINILAPITGGKEGVVAKVTAEFDFAQKESTQEYYDPNNVVRS 297

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
              L +  + ++  +      V  N+  V         + E  +K +  +NYE++     
Sbjct: 298 EQNLEESREGAKPKEIGGVPGVVSNIGPVQGL--ENEDAKEKYEKSQTTTNYEVSKTISN 355

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRR 402
              +   + RLS AVVV+     ++     +Q          + +I  +V  A G N +R
Sbjct: 356 IKGEFATIRRLSAAVVVDGKYQKQLDNNGVEQLEYIALNQQEMEQITALVRQAIGYNQQR 415

Query: 403 GDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           GD +++++         F + T    F++         +  L ++V  +++       + 
Sbjct: 416 GDEVSVSNFQLNGQISGFKARTPLERFLETSQELLTPFMPLLKYVVVGIILFLFYKKVIV 475

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                    K +            S          +   L+   + I        +  + 
Sbjct: 476 PFSERMLEAKAD------EEEEIESLLKIEDEEEENTDKLNEVKRRIEDQLGFSNNNEDE 529

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                   ++  + +      A + +     E+
Sbjct: 530 VKYSVLLEKIKELAQEKPTDLANLFQTLVHDEL 562


>gi|34558286|ref|NP_908101.1| flagellar MS-ring protein [Wolinella succinogenes DSM 1740]
 gi|34484005|emb|CAE11001.1| FLAGELLAR BASAL-BODY M-RING PROTEIN FLIF [Wolinella succinogenes]
          Length = 577

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/570 (20%), Positives = 223/570 (39%), Gaps = 26/570 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-----NSPHYDNLYVKL 55
           M       Q       L   + L++   I+  +        +      +   Y  L+  +
Sbjct: 1   MDFKVLFNQIQNLYAKLNLKQKLVILGTIVGVVAFVSFLIVYNGGKGKSLDGYAVLFEGV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
              D   I   L ++ I +++  + ++I +P   V + RI LA+ G+P SS   G+E+FD
Sbjct: 61  SPQDGALIIQHLEQSKIPYKLPKD-NTILIPEEKVYEERIKLASSGIPKSS-KVGFEIFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K   FG T F Q++  VRA EGE++RTI+S++ I  A VHI +P    F      PTASV
Sbjct: 119 K-QEFGATDFDQKVKFVRATEGELSRTIESLTPIEKASVHIAIPKDSVFVSKETPPTASV 177

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
           ++R              I++LVAAA+  L+  +V +++  G+ L   +     + +    
Sbjct: 178 VLRLRPNMALTPAQVLGIKNLVAAAITRLEPENVRIVNENGEPLGEGDELTTSKEMAAVQ 237

Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           +   Q  +  +E  I   LA  + G D   + V AE +   +Q  + ++DP++ V     
Sbjct: 238 MRYKQNFERSVEEKIVNILAPIIGGADRVVAKVTAEFDFSQKQSTQELFDPNNVVRSEQT 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           L +  +  +  +         N+  V           +  +K +  +N+EI+    +   
Sbjct: 298 LEEKREGFKPKEIGGVPGAVSNIGPVQGL--DSQDVRDKYEKSQTTTNFEISKTVSSIKG 355

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDT 405
           +   ++RLS AVVV+    T V  +           D  + +IN +V  A G +  RGD 
Sbjct: 356 EFATIKRLSAAVVVDGKYKTSVNEQGNEVLEYIPLSDEEMEKINGLVRQAMGFSGTRGDE 415

Query: 406 ITITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            T+++ +F       +    V  F+  L +     +  L +++  L++       +    
Sbjct: 416 ATVSNFEFDAKSAGYAPKTPVERFVQGLEKFMGPFMPMLKYVIVGLILFVFYKKIIVPFA 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                 +        +             +   N       + +   S   +  I     
Sbjct: 476 ERML--EVHEDEDEEIESLIKLDDDDEDALNKFNEMKRRVEEQLGLGSGLSEDEI---KY 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEI 554
                ++ ++     E  A I +   R E+
Sbjct: 531 DVLLEKMKNIAMEKPEEVAGIFQTLIRDEL 560


>gi|264676594|ref|YP_003276500.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2]
 gi|299531261|ref|ZP_07044671.1| flagellar M-ring protein FliF [Comamonas testosteroni S44]
 gi|262207106|gb|ACY31204.1| flagellar M-ring protein FliF [Comamonas testosteroni CNB-2]
 gi|298720668|gb|EFI61615.1| flagellar M-ring protein FliF [Comamonas testosteroni S44]
          Length = 568

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 115/574 (20%), Positives = 229/574 (39%), Gaps = 60/574 (10%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             +   +L R + L   ++  +  +  +AA  F   P Y  L+  +   D   I   L++
Sbjct: 24  LAQRWNALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKLLFSNVSDKDGGAIVAQLTQ 83

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ S+ G +I +P+  V   R+ LA QGLP   S +G+EL  + + FG+T F + +
Sbjct: 84  MNVPYKYSEGGGAILIPADRVHDVRLKLATQGLPK-GSVTGFELM-ENSKFGITQFQERL 141

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187
              R LEGE+ R+I +++ + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 142 NFQRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQ 201

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
              I HLVA++VP ++   V+V+D TGKLL+ +       +  +     Q ++ +    I
Sbjct: 202 IAGIVHLVASSVPEMEPAAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRI 261

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSETSQ 301
              L   +G +N ++ V AEL+    +     + P+        RS ++ +       + 
Sbjct: 262 LDILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSADGGAVRSQQVMETNGEKTATP 321

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSL-----------ENTDKKEEQSNYEINTKSIATTHD 350
           P        N P  +        +               +K+E  +NYE++     T   
Sbjct: 322 PTGVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNGQGNKRESITNYEVDKTVRVTRGS 381

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQ-----------GKIDSYLAEINKIVSAATGIN 399
              ++RL+ AVVVN          +A                     ++  +V    G +
Sbjct: 382 TGTVKRLTAAVVVNAPLAAAAGTDAATAATAAAVSSGLRPLTAQQQEQLLTLVRETVGYS 441

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           + RGD++ + S  F+++    +        +I +   +  +   + L G L++  L    
Sbjct: 442 ADRGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPL 501

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           L+  +     +   +  +++  P   + A                              +
Sbjct: 502 LKGRNTGPGGQLNAIEAEALDRPALPAPAKE----------------------------L 533

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +    ++   +  H+ + N    A I++ W   E
Sbjct: 534 SPTKEQERLDQARHLAKQNPIAVANIVKTWINGE 567


>gi|325295413|ref|YP_004281927.1| flagellar M-ring protein FliF [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065861|gb|ADY73868.1| flagellar M-ring protein FliF [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 529

 Score =  337 bits (863), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 131/563 (23%), Positives = 223/563 (39%), Gaps = 48/563 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARF-FVNSPHYDNLYVKLEVSD 59
           M I +   +  +        + +IL    L  +            +  Y  LY  L   D
Sbjct: 1   MNIKEIQTKVQEIFKKNANPKNVILLLSALTLVSFLAFIAIKQSTTEDYAVLYTHLSPDD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L E +I +++  NGS I VP   V   R+ LAA+GLP      G+ELFD+   
Sbjct: 61  AGSILSVLQEEHIPYKVEGNGSIILVPKEKVYDIRLKLAAKGLPH-GKVVGFELFDE-PK 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR- 178
            G+T F + +  +RALEGEI RTI+ I+ I   +V+I +P    F +    P AS+++  
Sbjct: 119 LGITQFQENVEFLRALEGEIERTIKRINAIQDVKVNIALPKDSIFVRESEEPKASILVNL 178

Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIV 234
                   +  +AI  LV+ AVP L   +VTV+D+ G++LT       +     K L + 
Sbjct: 179 WPGRELTKEQVKAIVFLVSHAVPGLKPENVTVIDNRGRVLTDLLSGNEDETGSSKELEVK 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++ EIE  I   L+  LG          E+     + +E +YDPD     S R  ++ 
Sbjct: 239 RKLEKEIERKIQSMLSQVLGSGKVVVRASVEIETGRLEKKEELYDPDMTAVVSERKIQEK 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           +     + +       N+P V    +     +   +KK+  +NY+++     T    +K+
Sbjct: 299 ETGIKPKEQGVPGTTTNVPPV--LNLNQGNEILKKEKKDVTTNYDVSKTIQKTITPIFKI 356

Query: 355 ERLSIAVVVNKGRLTEVLGRS----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           +R+S+ V+V+     E             +    +    +IV +A G + +RGDT+T+ S
Sbjct: 357 KRISVGVLVDGKYQKEKDKAGNEIIKFVPRSQEEIKTYEEIVKSAIGYDPKRGDTVTVAS 416

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F   Q       Q  F  I        I A   L+  +LV  + L  L+         
Sbjct: 417 VPFEAKQFVQKEKSQKKFPWI-------YIAAGGGLLTLILVGIIALKLLKSKKTEPQQP 469

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           +      + +            L                              S    ++
Sbjct: 470 EIPETLMAEMKARAEHKEELEELHIE---------------------------SDPLYIK 502

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           ++ + + + E  A ++ KW R E
Sbjct: 503 IVEIAKEHPELVANVISKWIREE 525


>gi|85058031|ref|YP_453733.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str.
           'morsitans']
 gi|84778551|dbj|BAE73328.1| flagellar basal-body M-ring protein FliF [Sodalis glossinidius str.
           'morsitans']
          Length = 568

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 212/549 (38%), Gaps = 57/549 (10%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               +  +P Y  LY  +   D   +   L+  NI +R + N  +I VPS  V + R+ L
Sbjct: 44  VLLLWARTPDYRILYSNISDQDGGAVVAELTTMNIPYRFAGNSDAIMVPSDRVHETRLLL 103

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A +GLP   +  G+EL D+   FG++ F ++I   RALEGEIARTI++++ + +ARVHI 
Sbjct: 104 AQKGLPKGGA-LGFELLDRE-KFGMSQFSEQINYQRALEGEIARTIKTLNPVKSARVHIA 161

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           MP    F +     TASV +             +AI  LV+  VP+L  G++T++DS G+
Sbjct: 162 MPKPSLFVREHKPATASVTLTLYPGRALDTGQIQAITWLVSGTVPDLPAGNITMVDSQGQ 221

Query: 216 LLTAN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           LL      E ++    L+  + ++ + +  I+  LA  +G  N R+ V A+L+    +  
Sbjct: 222 LLAQPGNNELDLSTTQLAYTREVEGDFQRRISAILAPVIGAANVRAEVTAQLDFTAVEQT 281

Query: 275 EIVYDPDSKVERSIRLSKDAQRSET---SQPESAVTVEQNMPHVSDRKVPLPRSL----- 326
              + P+ + E     S+    S+      P        N P           +      
Sbjct: 282 AEQHKPNGRPEEMAIRSQQLSASDQIGIQAPGGVPGALSNQPTPPATASIESPANAAAGK 341

Query: 327 --------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                                 + + E+  NYE++     +      ++RLS AVVVN  
Sbjct: 342 KPASKDSVPPPAAAAPIVQPPRSSQNEKTINYEVDRTLTHSRFRPGVIKRLSGAVVVNDR 401

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                             + ++  +V  A G +S RGDT+ I +  F+ NQ         
Sbjct: 402 ----EDSNGNRVHLTPQEMQDVTALVREAMGFSSERGDTLNIVNTRFVANQDIMPPLP-- 455

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                     +   + L + +  LL        LR L       + E       +  P  
Sbjct: 456 --FWQDPGLQSIAFSLLRYALVALLFWLAWRKGLRPLWQRQQEIERERIRAQYEASQPRD 513

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                     +    + + Q +                + S  +L  +     +  A+IL
Sbjct: 514 EPRPISRSELEKETREKARQAM----------------EDSIRQLRDVAAARPQMVARIL 557

Query: 547 RKWARSEIE 555
           R+W   E +
Sbjct: 558 RQWITREQQ 566


>gi|307944136|ref|ZP_07659477.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4]
 gi|307772482|gb|EFO31702.1| flagellar M-ring protein FliF [Roseibium sp. TrichSKD4]
          Length = 537

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 136/549 (24%), Positives = 239/549 (43%), Gaps = 17/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    +   +LG TR+  + +V  + + +F      V +P    LY  L + D   I   
Sbjct: 1   MNGLIEFIKTLGPTRVAAMGAVAAMLVGIFAFIILRVTAPQMTTLYSDLTLEDSGAIVSR 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + + +  NG+++ VP   V + R+ LA  GLP+  S  GYE+FD+ ++ G TSF+
Sbjct: 61  LEGMGVPYELGRNGATVMVPRERVARLRMQLAEDGLPTGGS-IGYEIFDRSDTLGATSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q I  +RALEGE+AR+I +I  I +ARVH+V+P+   F++    PT S+++         
Sbjct: 120 QNINHLRALEGELARSIAAIDRIQSARVHLVIPERQLFQRDQRAPTGSIVLNVRGTLGQG 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243
              A++HLVA AV  L    V+V+D TG+LL     ++ E  I       V AI+  ++ 
Sbjct: 180 EIRAVQHLVATAVEGLRPESVSVVDETGRLLASGAESDEEGIIGNSLQERVFAIESRLKG 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            + + L++ +G    R  V A+++ +        +DP+ +V RS +  ++A  S     E
Sbjct: 240 QVEEILSSVVGPGRSRVRVAADVDFNRTTETIETFDPEGQVVRSTQTKEEASSSTERTNE 299

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             V    N             S E T   EE  NYEI+  +     +  +++RLS+AV+V
Sbjct: 300 VTVG---NELPNGGDNNGGEGSNEETTATEEIVNYEISRSTKTEIVEAGRVQRLSVAVLV 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G      +    L  I  +V +A G +  RGD + + ++ F      +   
Sbjct: 357 DGTYGPNADGEVVYTPRTQETLDRIALLVRSAVGFDEGRGDIVEVVNLQFAAPPQGDLTE 416

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
               F              ++ L+  LL+ F+    LRR+   ++ +  E+         
Sbjct: 417 EPGLFEFTKEDIMRFAELGVLLLISLLLLLFVVRPLLRRIVTPEEPQPQELLIGPDGQLI 476

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             S   +     +D + ++   +   + +              S  ++  MIE +     
Sbjct: 477 AESEVPSEDAEEDDEMRIEWLEEAKAAGAAQA----------TSISKVGEMIEEHPTEAV 526

Query: 544 KILRKWARS 552
            I+R W   
Sbjct: 527 TIVRGWLDE 535


>gi|221069298|ref|ZP_03545403.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1]
 gi|220714321|gb|EED69689.1| flagellar M-ring protein FliF [Comamonas testosteroni KF-1]
          Length = 568

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 115/574 (20%), Positives = 231/574 (40%), Gaps = 60/574 (10%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
             +  ++L R + L   ++  +  +  +AA  F   P Y  L+  +   D   I   L++
Sbjct: 24  LAQRWSALDRGQRLRWGALAALVAVGLVAAAVFYRQPDYKMLFSNVSDKDGGAIVAQLTQ 83

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
            N+ ++ S+ G +I +P+  V   R+ LA QGLP   S +G+EL  + + FG+T F + +
Sbjct: 84  MNVPYKYSEGGGAILIPADRVHDVRLKLATQGLPK-GSVTGFELM-ENSKFGITQFQERL 141

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKS 187
              R LEGE+ R+I +++ + +ARVH+ +P+   F +   +P+ASV++            
Sbjct: 142 NFQRGLEGELTRSILALNAVQSARVHLALPNQNGFFREQQKPSASVLLSLHPGRMLDRAQ 201

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNI 245
              I HLVA++VP ++   V+V+D TGKLL+ +       +  +     Q ++ +    I
Sbjct: 202 IAGIVHLVASSVPEMEPSAVSVVDDTGKLLSQSPDGNAGGVDMQQFLYTQQVEQQYVRRI 261

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD----SKVERSIRLSKDAQRSETSQ 301
              L   +G +N ++ V AEL+    +     + P+        RS ++ +       + 
Sbjct: 262 LDILEPVVGKNNVKAQVSAELDFSQTESTSEQHRPNQSTDGGAVRSQQVMETNGDKTATP 321

Query: 302 PESAVTVEQNMPHVS-----------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           P        N P  +            +     +     +K+E  +NYE++     T   
Sbjct: 322 PTGVPGATSNQPPQNSTAPINGANPAPQAAGAGQGNAQGNKRESITNYEVDKTVKVTRGS 381

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQ-----------GKIDSYLAEINKIVSAATGIN 399
              ++RL+ AVVVN          +A                     ++  +V    G +
Sbjct: 382 TGTVKRLTAAVVVNAPLAAAAGTDAATAAAAAAVSSGLRPLTAQQQEQLLTLVRETVGYS 441

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           + RGD++ + S  F+++    +        +I +   +  +   + L G L++  L    
Sbjct: 442 ADRGDSVNLVSAPFMDSGAAPAELPMWKDPEIQAMAKSLGVPIALALFGALVLLGLVRPL 501

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           L+  +     +   +  +++  P   + A                              +
Sbjct: 502 LKGRNTSPGGQLNAIEAEALDRPALPAPA----------------------------KDL 533

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +    ++   +  H+ + N    A I++ W   E
Sbjct: 534 SPTKEQERLDQARHLAKQNPIAVANIVKTWINGE 567


>gi|297379568|gb|ADI34455.1| flagellar M-ring protein FliF [Helicobacter pylori v225d]
          Length = 567

 Score =  336 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 116/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYTQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI++++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIENLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMVPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|325995631|gb|ADZ51036.1| Flagellar M-ring protein [Helicobacter pylori 2018]
 gi|325997227|gb|ADZ49435.1| Flagellar MS-ring protein [Helicobacter pylori 2017]
          Length = 567

 Score =  336 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 116/576 (20%), Positives = 231/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++  +  +I VP   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+        +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T     M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566


>gi|317181691|dbj|BAJ59475.1| flagellar MS-ring protein [Helicobacter pylori F57]
          Length = 567

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGTPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILAFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|296135691|ref|YP_003642933.1| flagellar M-ring protein FliF [Thiomonas intermedia K12]
 gi|295795813|gb|ADG30603.1| flagellar M-ring protein FliF [Thiomonas intermedia K12]
          Length = 568

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 116/572 (20%), Positives = 218/572 (38%), Gaps = 40/572 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L     +   +   + L   + +   I L +    + +   Y  LY  L   D   +   
Sbjct: 9   LQDPLGAFRQMNMNQRLTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L + NI +RI+  G+ I VPS+ V   R+ LAA GLP   +  G+E+ D     G + F+
Sbjct: 69  LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHEP-MGTSQFV 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           + +   RALEG + RTI+S+S + +A VH+ +P    F     +P+ASV+++     V  
Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186

Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQHEIEM 243
                 I HLV++AV  L   +V+V+D  G LL +    +  I    L     I+ +   
Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I   LA  +G +  R AV A+++    +   +VY        S +          + P 
Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYG--QGHLLSQQQQSTNSSGGGTLPA 304

Query: 304 SAVTVEQNMPHV--------------------SDRKVPLPRSLENTDKKEEQSNYEINTK 343
                  N P                      +     L             SNY+++  
Sbjct: 305 GVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKT 364

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T      ++RLS++V+VN                  + L ++ ++V  A G +++RG
Sbjct: 365 VSHTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLSAAQLGQMKQLVENAIGFDAKRG 419

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL--- 460
           DT++I +M F   Q      + +     +       +  ++ L+  L+       A    
Sbjct: 420 DTVSIVNMPFTAAQKEAEKQLPLWRQAWVWDGVRQAVPYVIALILGLMAYRAMRKATSGD 479

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
            +       +  E+   +    P      ++G      +A       +   +  L + + 
Sbjct: 480 VKAKRRKGKEAAELDETAREETPSDGMQKSSGPGAGAEMAASGVPGALAPDTVQLSNTLE 539

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +  +         +++ +  R A+++++W   
Sbjct: 540 TDAAIS-----RELVKQDPRRAAQVVKEWLSD 566


>gi|157371187|ref|YP_001479176.1| flagellar MS-ring protein [Serratia proteamaculans 568]
 gi|157322951|gb|ABV42048.1| flagellar M-ring protein FliF [Serratia proteamaculans 568]
          Length = 563

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 127/576 (22%), Positives = 235/576 (40%), Gaps = 54/576 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                    L     + L       I + +A   +  SP Y  LY  +   D   I   L
Sbjct: 13  NGLQAMWNRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNINDRDGGAIVTQL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           ++ NI FR ++NG+++ +P+  V + R+ LA  GLP   +  G+EL D+   FG++ F +
Sbjct: 73  TQMNIPFRFAENGAALLIPADKVHETRLRLAQLGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
           +I   RALEGE++RTI+S+  +  ARVH+ +P    F +    P+ASV +          
Sbjct: 131 QINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTLTLQPGRALDD 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               AI ++V+++V  L  G+VTV+D +G+LLT ++     +    L     ++   +  
Sbjct: 191 GQINAIVYMVSSSVAGLPPGNVTVVDQSGRLLTQSDGAGRDLNAAQLKYANEVESRYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET----- 299
           I   LA  +G  N R+ V A+++  T++  +  Y P+    ++   SK   +S+      
Sbjct: 251 IEAILAPMVGNGNARAQVTAQIDFATREQTDEEYQPNQLPNKAAVRSKQMSQSDQIGGPL 310

Query: 300 ---------------------SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
                                +   +A     N    +        S     + +E +NY
Sbjct: 311 VGGVPGALSNQPSAPATAPIETAKPAATGNNANATQPNAAATRSAASGPQNSRLDETTNY 370

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           E++     T      ++RLS+AVVVN                    LA+I  +V  + G 
Sbjct: 371 EVDRTIRHTQQKAGTVQRLSVAVVVNYR---GTDKDGKPLPMSKEQLAQIESLVRESMGF 427

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           +S RGDT+ + +  F +N++                    + +A  +L+  L+   L   
Sbjct: 428 SSTRGDTLNVVNTPFTDNEVTGGELP----FWQSQAFIDRLFDAGRYLLVLLVGWLLWRK 483

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +R       A +      +       + +             +  + +  +  R  Q R
Sbjct: 484 LVRPQLQNRQAVQKAAIAAANTPMAKPAES-------------NKQSNEELAQHRKSQQR 530

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +++ V  Q   R+  + + +    A ++R+W  +E+
Sbjct: 531 VSAEVQSQ---RIRDLADKDPRVVALVIRQWMSNEL 563


>gi|251772444|gb|EES53011.1| flagellar M-ring protein FliF [Leptospirillum ferrodiazotrophum]
          Length = 530

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 113/566 (19%), Positives = 197/566 (34%), Gaps = 51/566 (9%)

Query: 1   MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M +L + +         L   + ++   +    + L +       S     LY  L  +D
Sbjct: 1   MDVLRKAMETISMWFGRLTMLQKVVAGILGAFLVGLLVFLGVVGKSADKSVLYSHLSPTD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              IS  L    I +     G+ I VP   V   R+ LA  GLP     +G+ +F    S
Sbjct: 61  SFEISQKLDRMGISYDTDAKGTEIRVPKKQVYMLRMQLADDGLPRH-HGAGFAIF-NHPS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
              T F+Q +  ++AL+ E+ RTI+ +S I  ARV IV+P    F +      ASV++R 
Sbjct: 119 LTTTDFVQHVQYLQALQSELDRTIEEMSPIALARVSIVLPRRSVFLRHQKGAHASVLVRL 178

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIV 234
                      + + HLVA +V  L    VTV+D+TG +L           +    L+  
Sbjct: 179 KPGRSLSRAQVKGVVHLVANSVEGLTPDHVTVVDNTGTILNEKHPGLIPGELTKAQLAYQ 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             ++H +   +   L   LG       V A L+    +    +YDP  +        ++ 
Sbjct: 239 AMVEHRLRNRVQSMLDQVLGEGQAVVRVNATLDFRRVEETRELYDPKGRALSEREKLREK 298

Query: 295 QRSETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  P     V  N+P  +         P   +     KK++  +Y+++        
Sbjct: 299 SSGTRIVPVGVPGVLSNVPGSNGKVASPPLGPKDGTQTKYSKKKDIEHYDVSHTMSHIVL 358

Query: 350 DNYKLERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
               + R+S++V+VN   +    +       + +    LA   +IV  A G ++ RGDT+
Sbjct: 359 PTGTVSRISVSVLVNGKTRTVTGKTGETQIYEPRTPEELASFTRIVQNAIGFDATRGDTV 418

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + S+ F                  ++      +  L   +G LLV    L  L+ +   
Sbjct: 419 VVDSVPFAAAAPEGKTQEV-----RMAERLKPFMPLLEIFLGGLLVLVFSLFILKPILQS 473

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              K   +        P                                           
Sbjct: 474 MMTKSLPMPVSGPAGLPIPDREE------------------------------ERETVSS 503

Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552
           S   +  M + +  + A++LR W + 
Sbjct: 504 SKEDIARMTQEDPSQAAQVLRLWLKE 529


>gi|217033359|ref|ZP_03438790.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10]
 gi|216944300|gb|EEC23725.1| hypothetical protein HP9810_9g112 [Helicobacter pylori 98-10]
 gi|317177162|dbj|BAJ54951.1| flagellar MS-ring protein [Helicobacter pylori F16]
 gi|317179256|dbj|BAJ57044.1| flagellar MS-ring protein [Helicobacter pylori F30]
 gi|332673195|gb|AEE70012.1| flagellar M-ring protein FliF [Helicobacter pylori 83]
          Length = 567

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|15611393|ref|NP_223044.1| flagellar MS-ring protein [Helicobacter pylori J99]
 gi|4154846|gb|AAD05899.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
          Length = 567

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 118/576 (20%), Positives = 235/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++  +  +I VP   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR-LTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+    +    G +A   +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALEDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566


>gi|124516311|gb|EAY57819.1| Flagellar M-ring protein FliF [Leptospirillum rubarum]
          Length = 531

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/564 (22%), Positives = 217/564 (38%), Gaps = 49/564 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+             +   R + +  V +  +   +       S     L+  L   D  
Sbjct: 3   ALRQIFQNLLDRFMQMPVARRMTVLVVFVGMMAGGVFFSMMEKSGGDGVLFSNLSPGDSM 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+   + + +S  GS I VPS  V   R+ LA +GLP     +G++LF    S  
Sbjct: 63  AIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLF-NHPSLA 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F+Q +  + AL+ E+ RTI+ ++ I  ARV IV+P    F +   +  ASV++R   
Sbjct: 121 TTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRLKP 180

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQA 236
               +      I HLVA AVP L    VTV+D+ G++L           +    LS  + 
Sbjct: 181 GMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQRE 240

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++  ++  +   L   LG D     V AELN    +     +DP+ +V +     ++   
Sbjct: 241 VEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREKST 300

Query: 297 SETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                P     V  NMP  +         P   +     KK++ ++Y ++      T   
Sbjct: 301 GSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSRTDQHVTEPV 360

Query: 352 YKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L R+S++V+VN   +T   +   ++  Q +    + +  +IV  A G +S RGD + +
Sbjct: 361 GNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIQDFTRIVQNAIGFDSARGDQVVV 420

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S+ F      +   +  SF + L+      +  L   +G LL+    L  LR L     
Sbjct: 421 LSVPFSGTAAPSPKNIDQSFQEKLA----PFVPLLEIFLGGLLLVIFSLLVLRPLLKAMV 476

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             K EV        PP+  A                                +   + S 
Sbjct: 477 QWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRSSR 506

Query: 529 LRLLHMIEINEERFAKILRKWARS 552
             +  M + +  + A ++R W + 
Sbjct: 507 DEVARMTQEDPGQAATVVRSWLKE 530


>gi|315586339|gb|ADU40720.1| flagellar M-ring protein FliF [Helicobacter pylori 35A]
          Length = 567

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/576 (20%), Positives = 232/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + N+ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLNNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|317010623|gb|ADU84370.1| flagellar MS-ring protein [Helicobacter pylori SouthAfrica7]
          Length = 567

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 233/572 (40%), Gaps = 26/572 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALIVFLLIYPFKEKNYVQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++S +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDPSDNALILQHLQQNQIPYKVSKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGTPKKQIGGVPGVVSNIGPVQGLKDNKEQ--EKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLQKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMRKTQKVLGSFTPLIKYVLVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIED 556
           +    ++   ++   +  A + +   + EI  
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISS 562


>gi|261837785|gb|ACX97551.1| flagellar basal-body M-ring protein [Helicobacter pylori 51]
          Length = 567

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITTLLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L   +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTTENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI    T+
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSTK 566


>gi|254563420|ref|YP_003070515.1| basal-body MS biosynthesis protein [Methylobacterium extorquens
           DM4]
 gi|254270698|emb|CAX26702.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens DM4]
          Length = 540

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 143/552 (25%), Positives = 252/552 (45%), Gaps = 19/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +       T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   
Sbjct: 1   MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60

Query: 67  LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L    I +      G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF
Sbjct: 61  LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +  +RA+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +     
Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
               AIRHL A+AV  L    V+++D  G+LL       E +  G        I+  +  
Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + +A  +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E
Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P  +  +   P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V
Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +
Sbjct: 357 DGVYAPGADGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTTAEFS 416

Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                 SF+         ++   V  + TL+V    +  L R     DA     G    L
Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +            +     + +   +          ++IN  +  ++  R++ M+  +  
Sbjct: 477 ALAGAGGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527

Query: 541 RFAKILRKWARS 552
              ++LR W   
Sbjct: 528 ETVEVLRNWIHD 539


>gi|218532348|ref|YP_002423164.1| flagellar MS-ring protein [Methylobacterium chloromethanicum CM4]
 gi|218524651|gb|ACK85236.1| flagellar M-ring protein FliF [Methylobacterium chloromethanicum
           CM4]
          Length = 540

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 143/552 (25%), Positives = 253/552 (45%), Gaps = 19/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +       T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   
Sbjct: 1   MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60

Query: 67  LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L    I +      G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF
Sbjct: 61  LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +  +RA+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +     
Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
               AIRHL A+AV  L    V+++D  G+LL       E +  G        I+  +  
Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + +A  +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E
Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P  +  +   P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V
Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +
Sbjct: 357 DGVYAPGADGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFS 416

Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                 SF+         ++   V  + TL+V    +  L R     DA     G    L
Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +    +       +     + +   +          ++IN  +  ++  R++ M+  +  
Sbjct: 477 ALAGAAGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527

Query: 541 RFAKILRKWARS 552
              ++LR W   
Sbjct: 528 ETVEVLRNWIHD 539


>gi|294339862|emb|CAZ88225.1| putative Flagellar M-ring protein FliF [Thiomonas sp. 3As]
          Length = 568

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/571 (20%), Positives = 219/571 (38%), Gaps = 38/571 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L     +   +   +     + +   I L +    + +   Y  LY  L   D   +   
Sbjct: 9   LQDPLGAFRQMNMNQRFTWLAGLAALIALVIVTLMWTSRLDYQVLYTNLSERDGGAVIGE 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L + NI +RI+  G+ I VPS+ V   R+ LAA GLP   +  G+E+ D     G + F+
Sbjct: 69  LQKLNIPYRITGGGAVIEVPSAQVYATRMKLAANGLPK-GAGVGFEVLDHEP-MGTSQFV 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           + +   RALEG + RTI+S+S + +A VH+ +P    F     +P+ASV+++     V  
Sbjct: 127 ERVNYQRALEGSLGRTIESLSAVQSATVHLAIPKPSVFLSEAEKPSASVLLKLYPGRVLS 186

Query: 187 --SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEM 243
                 I HLV++AV  L   +V+V+D  G LLT+ +  +  I    L     I+ +   
Sbjct: 187 GAQVAGIVHLVSSAVAGLGDKNVSVVDQDGNLLTSGQRADSGIQPDQLMYRNTIEQQYRK 246

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I   LA  +G +  R AV A+++    +   +VY        S +          + P 
Sbjct: 247 QIEALLAPLVGNEGVRVAVSADIDFAKTESSSVVYG--QGHLLSQQQQSTNSSGGGTLPA 304

Query: 304 SAVTVEQNMPHV--------------------SDRKVPLPRSLENTDKKEEQSNYEINTK 343
                  N P                      +     L             SNY+++  
Sbjct: 305 GVPGALSNQPPGGVTAPFVMGTASAPLTPQQLTQITPSLKTLAPTAASSSATSNYDLDKT 364

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
              T      ++RLS++V+VN                  + L ++ ++V  A G +++RG
Sbjct: 365 VSHTQQPVGSVKRLSVSVLVNDQAKGGK-----PVPLNPAQLGQMKQLVENAIGFDAKRG 419

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           DT++I +M F   Q      + +             +      V  L++  +   A+R+ 
Sbjct: 420 DTVSIVNMPFTAAQKEAEKQLPLWR----QAWVWDGVRQAAPYVIALILGLMAYRAMRKA 475

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL-QSRINSY 522
            + D   K   G ++            +      +     +         +L    +   
Sbjct: 476 ASGDVKAKRRKGKEAAEDDETAREETPSDGTQKSSGPGAGAEMAAGGMPGSLAPDTVQLS 535

Query: 523 VSKQSDLRL-LHMIEINEERFAKILRKWARS 552
            + ++D  +   +++ +  R A+++++W   
Sbjct: 536 NTLETDAAISRELVKQDPRRAAQVVKEWLSD 566


>gi|206603154|gb|EDZ39634.1| Flagellar M-ring protein FliF [Leptospirillum sp. Group II '5-way
           CG']
          Length = 531

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/564 (22%), Positives = 217/564 (38%), Gaps = 49/564 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+             +   R + +  V +  +   +       +     L+  L   D  
Sbjct: 3   ALRQIFQNLLDRFMQMPVARRMTVLVVFVGMVAGGVFFSMMEKTGGDGVLFSNLSPGDSM 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+   + + +S  GS I VPS  V   R+ LA +GLP     +G++LF    S  
Sbjct: 63  AIQGRLNRLGVPYHLSKKGSVIRVPSGQVYALRMELADEGLPRH-HGAGFDLF-NHPSLA 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F+Q +  + AL+ E+ RTI+ ++ I  ARV IV+P    F +   +  ASV++R   
Sbjct: 121 TTDFVQRVQYLEALQTELDRTIEEMTPIALARVSIVLPRRTVFLREPDQSHASVLVRLKP 180

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQA 236
               +      I HLVA AVP L    VTV+D+ G++L           +    LS  + 
Sbjct: 181 GMTLEHPQVNGIVHLVANAVPGLSASRVTVVDTEGQILNRKRRGLVPGELTEAQLSYQRE 240

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++  ++  +   L   LG D     V AELN    +     +DP+ +V +     ++   
Sbjct: 241 VEQSVQHQLQSMLDKVLGPDQSVVRVSAELNFRQVEKSSRTWDPNGRVLKDREQIREKST 300

Query: 297 SETSQPESAVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                P     V  NMP  +         P   +     KK++ ++Y ++      T   
Sbjct: 301 GSRILPIGVPGVLSNMPGANGKVASPPMGPKNTAETRYSKKKQIAHYHVSHTDQHVTEPV 360

Query: 352 YKLERLSIAVVVNKGRLT---EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             L R+S++V+VN   +T   +   ++  Q +    + +  +IV  A G +S RGD + +
Sbjct: 361 GNLRRISVSVLVNAVPVTIQSKTGPKTVMQPRDPKEIRDFTRIVQNAIGFDSARGDQVVV 420

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S+ F      +   +  SF + L+      +  L   +G LL+    L  LR L     
Sbjct: 421 LSVPFSGTSAPSPKNIDQSFQEKLA----PFVPLLEIFLGGLLLVIFSLLVLRPLLKAMV 476

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             K EV        PP+  A                                +   + S 
Sbjct: 477 QWKPEVSPMQPAEGPPLGKAEV------------------------------AETVRSSR 506

Query: 529 LRLLHMIEINEERFAKILRKWARS 552
             +  M + +  + A ++R W + 
Sbjct: 507 DEVARMTQEDPGQAAIVVRSWLKE 530


>gi|261839198|gb|ACX98963.1| flagellar M-ring protein FliF [Helicobacter pylori 52]
          Length = 567

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVMPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|78045011|ref|YP_359840.1| flagellar MS-ring protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997126|gb|ABB16025.1| flagellar M-ring protein FliF [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 528

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/559 (20%), Positives = 214/559 (38%), Gaps = 37/559 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M     L    +   +L   +      +IL  ++  +    F+  P Y  L   L+  + 
Sbjct: 1   MDFQSLLASIKERFQNLSSFQKRAYGILILTAVLSLLLGYIFLGRPSYTPLATGLDAKEA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I+  L E  I++++ D G++I VP S V +ARI LA+ G+  ++S  G+ELFD+    
Sbjct: 61  GAIAEKLKEWKINYKLGDEGTTILVPKSQVYEARIKLASAGVLETNSGIGFELFDQT-KL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIR 178
           G + F  ++   RAL+ E+ RTI  +  +  ARVH+V+P+   F       TAS+   ++
Sbjct: 120 GASDFENQVNYQRALQEELRRTIVQLDAVEDARVHLVLPEKSVFISEEKPATASILLKLK 179

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIV 234
            +     +  + I +LVA +V  L   +V V+D+ G +L+      +      G+   + 
Sbjct: 180 PLKKLTPQEIKGIIYLVANSVEGLKPENVQVVDTYGNVLSDQVDLSSSLSAQSGRQQEMK 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           +  + E+   IN  L   LG      ++ A+L+ + ++    +  P      S + SK+ 
Sbjct: 240 KQFETELTNRINNLLTTILGPGKAVVSINADLDFNQEETTSQIALP--GPLVSEQGSKEV 297

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
               +      V    N  + +   +    + E   K++   NY++             +
Sbjct: 298 VYG-SPGASGTVGTGPNT-NQNYPYINGSTNGEVQVKEDFTRNYQVGQTVYKLVKAPGTV 355

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS A+ ++ G                + + +I  IV+AA G +  RGD I I ++ F 
Sbjct: 356 KRLSAAIAIDSGV-------------PAADVNKIRDIVAAAMGYDQNRGDQIIINTITFD 402

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           +         Q           A      +     + ++ +    +RR      A     
Sbjct: 403 KTLAKQMEEQQAQAQKEQQARQALYKWLAIGAGALVFLSIIVFFGIRRFRKKPAAVADIS 462

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
               +              +     A  +               I     +    ++  +
Sbjct: 463 PRAPV-------------GVSELEAAAAAERGPGIIVREMTAEPIVIQKVQSDIEKIKSL 509

Query: 535 IEINEERFAKILRKWARSE 553
           ++ N +  A +LR W   E
Sbjct: 510 VDKNPDEVAMVLRAWLTDE 528


>gi|149203111|ref|ZP_01880082.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035]
 gi|149143657|gb|EDM31693.1| flagellar M-ring protein FliF [Roseovarius sp. TM1035]
          Length = 535

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 131/549 (23%), Positives = 237/549 (43%), Gaps = 16/549 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q  +   +L     +I+     V     +A     ++P    LY  LE S    +  A
Sbjct: 1   MQQITRLWQALTLRNRIIVIGAAFVMFWAVLALARMASTPSMTLLYAGLESSAAGEVVAA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + + ++  +I V S+   + R+ LA +GLP S   SGYEL D ++ FG TS M
Sbjct: 61  LEQQGVTYEVRND--AILVDSTRRDELRMILAGEGLPRSG-TSGYELLDGLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI S   IVAARVHI       F++   R  +  +         K
Sbjct: 118 FDAAYWRAKEGELARTIVSHPAIVAARVHIASTGANPFQRNVHRSASVSVSTNGAAVSAK 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A A++ LVA+AV +L   DV+++D+ G LL+  E  +                + +   
Sbjct: 178 HARALQFLVASAVADLTPDDVSIIDAEGTLLSGAEEAKTNTAD------ERAEGLRLRAQ 231

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G  N    +  E    T+  RE  +DP+ +V  S    + A  S  +     V
Sbjct: 232 RLLEARVGHGNAVVEIALETVTQTESTRERRFDPEGRVAISTDTEERANTSNGTDNG--V 289

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S     +  E+ NYE+++           ++R+++A+++N  
Sbjct: 290 TVASNLPD--GDAAAAATSASENTETRERVNYEVSSTEREVIQQPGAIKRMTVAILINGI 347

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +  G      + +  L  +  +V +A G++  RGD +TI ++ F E        V+ 
Sbjct: 348 TTPDASGTPIFAPRPEEELTALGDLVGSAVGLDETRGDALTIRTLQF-EPSAPTGTLVEA 406

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
             ++ L+    T++ +LV  +  L++    L  +          +     +      P  
Sbjct: 407 GLLERLAIDTMTLVQSLVLAIVALVLGLFVLRPILSRPVPLATPQLSAPIRRAPVQDPAL 466

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           + + +G++ + +I +   +    +   +L+ R++   +     RL  +I   +E   +IL
Sbjct: 467 TPL-SGVIEDGDIDVAGLSDVSEAPQISLRPRLDGG-TDDPVSRLRALIGQRQEETVEIL 524

Query: 547 RKWARSEIE 555
           R W  +E E
Sbjct: 525 RNWLEAEEE 533


>gi|240140910|ref|YP_002965390.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens AM1]
 gi|240010887|gb|ACS42113.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein [Methylobacterium
           extorquens AM1]
          Length = 540

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 143/552 (25%), Positives = 253/552 (45%), Gaps = 19/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +       T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   
Sbjct: 1   MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60

Query: 67  LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L    I +      G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF
Sbjct: 61  LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +  +RA+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +     
Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
               AIRHL A+AV  L    V+++D  G+LL       E +  G        I+  +  
Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + +A  +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E
Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P  +  +   P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V
Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +
Sbjct: 357 DGVYAPGANGKPAYQPRSDAEIARITALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFS 416

Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                 SF+         ++   V  + TL+V    +  L R     DA     G    L
Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +    +       +     + +   +          ++IN  +  ++  R++ M+  +  
Sbjct: 477 ALAGAAGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527

Query: 541 RFAKILRKWARS 552
              ++LR W   
Sbjct: 528 ETVEVLRNWIHD 539


>gi|317013789|gb|ADU81225.1| flagellar MS-ring protein [Helicobacter pylori Gambia94/24]
          Length = 567

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 116/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVLKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGASKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566


>gi|163856458|ref|YP_001630756.1| flagellar MS-ring protein [Bordetella petrii DSM 12804]
 gi|163260186|emb|CAP42488.1| flagellar M-ring protein FliF [Bordetella petrii]
          Length = 559

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 112/552 (20%), Positives = 205/552 (37%), Gaps = 76/552 (13%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +   P Y  L+  L+  D   I  AL + N+ +R S +G ++ VP+  V   R+ LA Q
Sbjct: 45  MWGREPDYKVLFANLDDRDGGAIVSALGQMNVPYRFSGDGRALLVPADRVYATRMQLAGQ 104

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   S  G+EL D    FG + F ++I   R LEGE+AR+I++++ + +ARVH+ +P 
Sbjct: 105 GLPRGGS-VGFELLDNA-RFGASQFAEQINYQRGLEGELARSIEAMNTVQSARVHLALPR 162

Query: 161 MGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    PTASV++              A+  LVA++VP+L   +++++D  G+LL+
Sbjct: 163 QSLFVRDRQAPTASVLLHLYPGRSLGDAQVAAVAWLVASSVPDLTAENISIVDQNGRLLS 222

Query: 219 AN-EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           A     R +      + + I+      I   L   +G  N ++   AE++   ++    V
Sbjct: 223 APLGEGRGLDADQSRLRRDIEQRTVERILTILNPLVGPGNVQAQASAEMDFARREQTSEV 282

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMPHVSDRKVPLPRSL-------- 326
           Y P+ +  ++   SK    S  +     +       N P  + +   +            
Sbjct: 283 YRPNQEPGQAAVRSKQTSDSLQTGIDPAQGVPGALSNQPPAAAQAPIVNPPAAPQAAQGG 342

Query: 327 ------------------------ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                      ++ +   NYE++            L+RLS+AVV
Sbjct: 343 QPGQLAQAGQNAAQGAATQAAPRLPTNNRNDATINYEVDRTISHVKQPVGMLKRLSVAVV 402

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN             Q   +  L ++  +V  A G +  RGD++ + +  F +  +    
Sbjct: 403 VNYL----PDSSGEPQPLPEEELTKLTNLVREAMGYSEARGDSLNLVNSQFNDKPV---- 454

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                    L     TV+  +  L   L +      A+    N     +     +     
Sbjct: 455 KPPFWRDPELLDLVKTVLAWVFGLALALWLYRRLRPAVSNYLNPPVDPEEAEARR----- 509

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                                  Q++   ++           + +  R   M   +    
Sbjct: 510 -----------------------QEMQREAQAAARAKEVNRYEDNLQRARDMATKDPRAV 546

Query: 543 AKILRKWARSEI 554
           A ++R W   + 
Sbjct: 547 AMVMRAWMTQDE 558


>gi|312115289|ref|YP_004012885.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100]
 gi|311220418|gb|ADP71786.1| flagellar M-ring protein FliF [Rhodomicrobium vannielii ATCC 17100]
          Length = 547

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 184/553 (33%), Positives = 288/553 (52%), Gaps = 20/553 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MAI DQ+     S   LG  R+  L +V +  + +     ++V+    D LYV L  SDV
Sbjct: 13  MAIRDQIDALRVSLLGLGARRLAALVAVGVAIVAIVGVGSYYVSRAEKDVLYVGLTASDV 72

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L EA I F  +   + I V      +AR+ LA +GLP +++ +GYELFDK+ S 
Sbjct: 73  SRIGAVLKEAGIPFDSNSEANKIFVNRGDTARARMILAERGLP-NNATAGYELFDKLGSL 131

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ ITRVRALEGEIARTI+++  + +ARVH+VM D GSFR+     TASV+++  
Sbjct: 132 GLTSFMQNITRVRALEGEIARTIEAMRAVNSARVHLVMADAGSFRREPQAATASVVVKPA 191

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQH 239
                 SA AIR +VA+AVP +    V+VL + G +L+A +       GK L + + +  
Sbjct: 192 GA-EPPSAAAIRQIVASAVPGMKPDHVSVLSTDGTILSAGDDGPGVASGKMLDLEKQVSR 250

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           EI  NI K L   LG+ NF ++V   LN+D +QI E  +DP+SK ERS R  K++  S+ 
Sbjct: 251 EINDNIRKTLTPVLGLGNFETSVTVRLNLDRKQINETAFDPESKAERSTRTVKESSNSQN 310

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +  +  ++VEQN+P       P  +S   +++KEE +NYE+++KS+ T  + Y++E +++
Sbjct: 311 TNQKWNISVEQNIPTDQQNTKPSDQSKRASERKEETTNYEVSSKSVTTQSEGYRVENIAV 370

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+  L      +      D  +  + ++VS+A G++S RGD  T+ ++DF     F
Sbjct: 371 AVVLNRKPLLAAADSAKTAP--DEQIRVVERLVSSAAGLDSLRGDKATVVALDFAGGNEF 428

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +     ++F D +     + + A   L+ T+L   +GL    R+   +  K         
Sbjct: 429 DQA-PSLTFWDHVMEGLGSYVIAAALLISTILFVAVGLRPSLRMILENKPKPAPQIAADK 487

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            + P + +   T   P++                       S         +   I  +E
Sbjct: 488 RTTPVLETVAATVETPDNAEGPPLPTP--------------SAKKNSPLKSVEKAIAEDE 533

Query: 540 ERFAKILRKWARS 552
           E+ A +L  W R 
Sbjct: 534 EKAAAVLIDWIRE 546


>gi|163853490|ref|YP_001641533.1| flagellar MS-ring protein [Methylobacterium extorquens PA1]
 gi|163665095|gb|ABY32462.1| flagellar M-ring protein FliF [Methylobacterium extorquens PA1]
          Length = 540

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 143/552 (25%), Positives = 253/552 (45%), Gaps = 19/552 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +       T LG  RI  +A+V L  +  F      V+ P    L+  L + D + +   
Sbjct: 1   MKPILDLVTKLGPARIAAMAAVTLTLVGFFAFVILRVSRPDMGVLFSDLSLQDSSSVIRE 60

Query: 67  LSEANIDFRISDN-GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L    I +      G ++  P + + K R+  A +GLPS     GYE+FDK ++F  TSF
Sbjct: 61  LDARGITYETKGEMGQTVLAPRADLAKLRMDFAGKGLPSQGG-IGYEIFDKGDAFSSTSF 119

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           +Q +  +RA+EGE+AR+I++I  + AARVH+V+P+   F +    P+A+++++ +     
Sbjct: 120 VQNVNHLRAMEGELARSIRAIGRVQAARVHLVIPERRLFERDREAPSAAIVVKLMGDLDA 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
               AIRHL A+AV  L    V+++D  G+LL       E +  G        I+  +  
Sbjct: 180 SQVRAIRHLAASAVEGLKPERVSIVDERGRLLADGARGAEADGAGALEERQAGIERRMRS 239

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + +A  +G    R  V AEL+++  + R   +DP+S+V RS +    ++ S T   E
Sbjct: 240 QIEEIVAGIVGQGRARVQVTAELDLNRVESRSESFDPESRVVRSTQT--RSENSLTGGAE 297

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
             VTV   +P  +  +   P+  +++ K EE +NYEI+  +   T +  +L+RLS+AV+V
Sbjct: 298 GQVTVGNELPGANQNQPA-PQQKDSSQKNEETTNYEISRVTKVETLEGGRLKRLSVAVLV 356

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           +        G+ A Q + D+ +A I  +V  A G +  RGD + + ++ F E       +
Sbjct: 357 DGVYAPGADGKPAYQPRSDAEIARIAALVRTAVGYDKVRGDQVEVVNLRFAETPTAAEFS 416

Query: 424 VQ---VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                 SF+         ++   V  + TL+V    +  L R     DA     G    L
Sbjct: 417 EPGLIQSFLSPTKEEVMRLVELTVLSLLTLVVLMAVVRPLLRRVLESDAPMALAGPAGAL 476

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +    +       +     + +   +          ++IN  +  ++  R++ M+  +  
Sbjct: 477 ALAGAAGGEAPVEIAVRENSTNKFLE---------SAKINGQIQAETVERVVDMVRASPT 527

Query: 541 RFAKILRKWARS 552
              ++LR W   
Sbjct: 528 ETVEVLRNWIHD 539


>gi|163781742|ref|ZP_02176742.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882962|gb|EDP76466.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 502

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 143/556 (25%), Positives = 237/556 (42%), Gaps = 60/556 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +   L    +  +++  ++  ++  +  V   L +    +   P Y  LY  L   D+N
Sbjct: 3   DLNSTLKNIQERFSAMPLSQKALVVGLPAVIFSLLVTVLIYSLQPDYAVLYSNLSPEDMN 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +  + +++  +G +I VP + V   R+ LAA+G+P+     GYELFDK ++ G
Sbjct: 63  AVLTELDKEGVKYKVGRDGRTILVPENKVRDVRLKLAAKGIPNKGV-IGYELFDK-STIG 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRA 179
           L+ F Q +   RA+EGE+ RTI     I  ARVHI +P+   F +    P+ASV   +R 
Sbjct: 121 LSEFQQRVNFKRAIEGELVRTILRFKNIEDARVHIALPEKSIFLRDEKEPSASVFIRLRP 180

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAI 237
                 +  +AIR+LVAA++ NL   +V V+D  G+ LTAN  E    I  K L I +  
Sbjct: 181 GAEITEEQVKAIRNLVAASIENLKPENVVVIDDKGRNLTANLDEGKEEISNKQLKIRREF 240

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + EIE  +  AL   LG  N +  V  EL+    Q RE  YDPD     S +  K  +++
Sbjct: 241 EREIERKVQTALEEALGYGNVKVRVSVELDFTKVQRREETYDPDMTAVVSEQ--KRKEKT 298

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +          N+P  +        +L  T+KKE  +NYE++ K + +  +  K++RL
Sbjct: 299 TGAPVGGVPGAAANIPPGTGAVQGQGGTL--TEKKETITNYEVSKKEVISVDNTLKIKRL 356

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+ V++NK                D     I KIVSAA G++ +RGDT+++ ++ F +  
Sbjct: 357 SVGVIINK-------------ELKDVNEESIKKIVSAAVGLDPKRGDTLSVVAVPFKKPA 403

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           +       +            +I  +V  V  LL+ F  L  LR+              +
Sbjct: 404 IAEEMGPPIPTWKKF------LIPGVVGAVMALLLVFGLLRFLRKKEAPAPVAVEVSAEE 457

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                   +   T   +                                    +  +   
Sbjct: 458 VATISGAEALRETARELE-------------------------------IVKTITEVARK 486

Query: 538 NEERFAKILRKWARSE 553
             ++ A +L+ W R E
Sbjct: 487 EPKKVAAMLKLWLREE 502


>gi|317180754|dbj|BAJ58540.1| flagellar MS-ring protein [Helicobacter pylori F32]
          Length = 567

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 117/576 (20%), Positives = 233/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I ++I  +  +I +P   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKILKD-DTILIPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKIKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLHYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGR---LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+      L +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIALKDGANTLEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T+    M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMLDNATLSEKIMHKTQKVLGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNATFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIVLEKIRGTLKERPDEIAMLFKLLIKDEISSDSAK 566


>gi|110677673|ref|YP_680680.1| flagellar MS-ring protein [Roseobacter denitrificans OCh 114]
 gi|109453789|gb|ABG29994.1| flagellar M-ring protein FliF, putative [Roseobacter denitrificans
           OCh 114]
          Length = 540

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 138/551 (25%), Positives = 235/551 (42%), Gaps = 13/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   + T L   R +I+A          +A      +P+   LY  LE      +  A
Sbjct: 1   MQQIVTAWTGLPLRRQVIVALATGAMFFAILAMSRMATAPNMTLLYAGLENGAAGDVVAA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +    F +   G SI V SS   + R+ LA++GLP++S+  GYEL D ++ FG TS M
Sbjct: 61  LEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEGLPANSTQ-GYELLDTLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI S   I  ARVHI       F++      +  +  +      +
Sbjct: 118 FDAAYWRAKEGELARTIVSSPHISMARVHIASTGSNPFQRGVTPKASVSVTPSGAAITPQ 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
             +AIR LV++AV  L   DV V+D+ G L+   +     +G      +     ++  + 
Sbjct: 178 QGKAIRFLVSSAVAGLASEDVAVIDANGALIGNADEVAPTIGG-----EDKADVLKARVQ 232

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G  N    V  +   +++ IRE ++DP+S+V  S    ++   S +      V
Sbjct: 233 RLLEARVGFGNSVVEVSVDTVTESEAIRERIFDPESRVAISTDT-EERNTSSSEAGGGDV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S    ++  E+ NYE++        +   ++R+++AV+VN+ 
Sbjct: 292 TVASNLPDQDG--AGGENSSSQNNETRERVNYEVSETEREILREPGAIKRVTVAVLVNEM 349

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
            +T+  G+     + +S L  +  +V++A G +  RGD ITI SM      L  +     
Sbjct: 350 TITDEAGQETVTPRDESELEALRDLVASAVGFDEARGDIITIKSMGLQSVPLQGTAA-GT 408

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S M   +    + I   +  + TL++    +  L   ++++DA        +        
Sbjct: 409 SLMSNFNIDVMSAIQMAILALVTLILGLFVVRPLLARNDLNDAPAVAALPGATDGETDGL 468

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-RINSYVSKQSDLRLLHMIEINEERFAKI 545
                    +  +       D    S  L    I S +S+    RL  MI   ++   +I
Sbjct: 469 GLDGEIDGDDFQLPDLPVISDFGDASGELPDLNIGSGMSEDPVDRLRTMIGERQDETVEI 528

Query: 546 LRKWARSEIED 556
           LR W   + E 
Sbjct: 529 LRSWLEDKEES 539


>gi|291277395|ref|YP_003517167.1| flagellar M-ring protein [Helicobacter mustelae 12198]
 gi|290964589|emb|CBG40442.1| flagellar M-ring protein [Helicobacter mustelae 12198]
          Length = 566

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 130/571 (22%), Positives = 226/571 (39%), Gaps = 27/571 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN-----SPHYDNLYVKL 55
           M +     Q         + + +I+   ++  I  F+    F       S  Y  L+  L
Sbjct: 1   MDLRAVFSQILNFFQRFSKKQRVIVIGGVIAAIAFFVFLIVFATNGKSRSDGYSVLFEGL 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
              D   I   L +  I ++I  N  +I +P   V + RI LA+QG+P +S   G+E+FD
Sbjct: 61  TPGDNALIIQHLQQNQIPYKI-PNEETILIPRDKVYEQRIELASQGIPKNS-KVGFEIFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
             + FG+T     +  +RA+EGE++RTI+S++ I  A V I MP    F      PTASV
Sbjct: 119 TKD-FGMTDEEHRVKFLRAIEGELSRTIESLAPIQKANVLIAMPKSSVFVSQQTPPTASV 177

Query: 176 MI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
           M+  R            I++LVAAA+PNL + +V ++   G+ L  ++     + +    
Sbjct: 178 MLGIRQGAALTSAQIFGIKNLVAAAIPNLTVENVKLVSQNGEPLGEDDEITSSKEVAAAQ 237

Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           L   Q I+  +E  I   L+  + G D   + V A+ +   ++  + +YDP++ V     
Sbjct: 238 LKYKQNIERALEAKILNILSPVVGGEDKVVAKVNADFDFSQRKSLQEIYDPNNVVRSEQN 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           L +  + ++  Q         N+  V        R  E  +K +  +NYE+         
Sbjct: 298 LEEKREGAQEKQIGGVPGAVSNIGPVQGLDSQNGR--EKYEKTQNTTNYEVGKTVNEIKG 355

Query: 350 DNYKLERLSIAVVVN---KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGD 404
           +   L RLS AVVV+   K  L +  G          ++ + +IN +V  A G N +RGD
Sbjct: 356 EFGVLTRLSAAVVVDGRYKRVLNKEDGLEHMEFVPLSEAEMEKINLLVKQAIGYNQKRGD 415

Query: 405 TITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
            +T+++ +F    Q F        F   L  +       L +L+  L++       +   
Sbjct: 416 DVTVSNFEFNAKSQTFVPEGKMDRFASKLEMYLKPFTPLLKYLIVALIIFIFYRKIIVPF 475

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                  +      +           T     + N   +   +                 
Sbjct: 476 AERMLETQ-----NNEEEKVESLFEATDDEDEDVNKFSEMRKRVEEQLGIGKNFNEEEVR 530

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                 +  ++IE   E  A + +   + EI
Sbjct: 531 YDVLLEKTKNIIEKKPEEIAMLFKTLIKDEI 561


>gi|253996299|ref|YP_003048363.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8]
 gi|253982978|gb|ACT47836.1| flagellar M-ring protein FliF [Methylotenera mobilis JLW8]
          Length = 546

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 117/536 (21%), Positives = 213/536 (39%), Gaps = 49/536 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              +   P Y  L+      D   I  AL + N+ ++ SD+G++I VP++ V + R+ LA
Sbjct: 40  FWLWSQQPDYRVLFSNYSDKDGGAIVAALEKLNVPYKFSDSGTAIMVPAAQVHQVRLKLA 99

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A GLP    N G+EL  +   FG++ F++++   R LEGE+ R+IQSI+ +  AR+H+ +
Sbjct: 100 ADGLPK-GGNIGFELL-ENQKFGVSQFVEQVNFQRGLEGELERSIQSIAAVEVARIHLAI 157

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +   +PTASV++              A+ HLVA++VPNL   +VTV+D  G L
Sbjct: 158 PKPSVFVRDQQKPTASVLLNLRPGRTLDAQQVSAVVHLVASSVPNLPTTNVTVVDQNGNL 217

Query: 217 LTANE---MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
           L+        +N+  + L  V+ IQ  I   +   ++  +G  N R+   AE++   Q+ 
Sbjct: 218 LSDTTKKMGAKNLDPEQLKYVEEIQQSIVKRVESIISPIVGAKNVRAEASAEIDFSVQEQ 277

Query: 274 REIVYDPDSKVERSIRLS--KDAQRSETSQPESAVTVEQNMPHVSDRKV----------- 320
               Y P+ + + +   S   +  +S   +         N P  +               
Sbjct: 278 AAETYKPNQQPDAAAVRSMQSNETKSANGETAGVPGALSNQPPPAATAPITTEANADANG 337

Query: 321 -PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQ 378
            P   +     +K   +NYE++            ++RL++AVVVN   + +   G+ + +
Sbjct: 338 QPASNATPTNTEKNLTTNYEVDKTVSYRQQPMGGVKRLNVAVVVNNMPVVDKKTGKVSYR 397

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
               +   +IN +   A G N  RGD++ I +  F          + +     +  +   
Sbjct: 398 ALTVAEKTQINDLAMQAMGFNKERGDSLAIVNTPFAGEPQEVLPAIPLWENPRVIENVKD 457

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           V+   V ++  L++    L  L                                      
Sbjct: 458 VLRFAVGVIALLIIYRKVLKPLLNKLTTPPKAA--------------------------- 490

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +    +   + S S +  +        Q       + + N    A ++  W     
Sbjct: 491 VNQGEAPDAVVSISADGSNAAEKPAYTQKIETAKQIAKDNPRMVASVVANWTNGNE 546


>gi|15606425|ref|NP_213805.1| flagellar M-ring protein [Aquifex aeolicus VF5]
 gi|6225356|sp|O67241|FLIF_AQUAE RecName: Full=Flagellar M-ring protein
 gi|2983628|gb|AAC07196.1| Flagellar M-ring protein [Aquifex aeolicus VF5]
          Length = 489

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 126/556 (22%), Positives = 234/556 (42%), Gaps = 72/556 (12%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + + L    +   +L   +  +   + L+ + L   A  +++  +Y  LY  L   D
Sbjct: 1   MDKLREYLNLLKERFNALTPVQKALAVGIPLLLLSLGAVALIYLSQENYTVLYTGLSPDD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +N +   L +  + ++IS +G +I VP ++  + R+ LAA+G+P      GYELFDK + 
Sbjct: 61  LNAVVTELDKEGVKYKISPDGRTIYVPENVARELRLKLAAKGVPRKGI-VGYELFDK-SG 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
             L+ F Q +   RA+EGE+A+TI S+  +  ARVHIV+P+   F +      ASV ++ 
Sbjct: 119 IVLSRFQQLVNFKRAIEGELAKTIMSLDCVEFARVHIVLPEKSLFIREEEEAKASVFLKL 178

Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQA 236
                   +  +AIR+LV+ +V NL    V V+D  G+ LTA  + E       L + + 
Sbjct: 179 KPGCELTPEQVKAIRNLVSGSVENLKPSQVVVVDDKGRDLTAYLDEEFKTNASQLKVKRE 238

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            +  +E  + K L    G    +  V AEL+  + + RE +YDPD     S +  K+   
Sbjct: 239 FEKSLERKLQKTLEEVFGYGKVKVNVSAELDFSSMKKREELYDPDLTAVVSEQKKKERTT 298

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S     +     + N+P  + R+         T++KE  +NYE++ + I       K++R
Sbjct: 299 STR--AQGIPGTQANIPPATGRQGGGE---LITERKESITNYEVSKREIYFEDKTIKVKR 353

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +S+ +V++K                     E+  ++ A+ G++ +RGD ++I S+ F++ 
Sbjct: 354 ISVGLVIDKDVKVNT--------------EELKNLIIASAGLDPKRGDQVSIVSVPFVKP 399

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +        +++             +   + +L++  L    L +L             
Sbjct: 400 TVVAEKPKVPTYV------------YVAVALVSLVILGLVAFGLVKLLRRRPPAPTPAPA 447

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
              + P                                    +     K     LL + +
Sbjct: 448 VPGVPP-----------------------------------TVEEVRKKTPYEELLEIAK 472

Query: 537 INEERFAKILRKWARS 552
              E+ A +L+KW + 
Sbjct: 473 QEPEKVAMVLKKWLKE 488


>gi|114764044|ref|ZP_01443283.1| flagellar M-ring protein FliF [Pelagibaca bermudensis HTCC2601]
 gi|114543402|gb|EAU46417.1| flagellar M-ring protein FliF [Roseovarius sp. HTCC2601]
          Length = 546

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 135/555 (24%), Positives = 227/555 (40%), Gaps = 14/555 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L Q      SLG  R +++ +  L  I   +A     + P    LY  LE      +  A
Sbjct: 3   LQQLATIWGSLGGRRRVLVIAATLATIAAVLAMGRMASQPSMALLYAGLEQGAAGEVVAA 62

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    I + +   G +I VP       R+ LA++GLP++S N GYEL D ++ FG TS M
Sbjct: 63  LEARGIPYEVR--GGAILVPDMQRDSLRMTLASEGLPANS-NQGYELLDGLSGFGTTSQM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   I  ARVHI       F++  +   +  +    +     
Sbjct: 120 FDAAYWRAKEGELARTIVASPYIATARVHIANSTANPFQRDVSPSASISVTTNGDVLSPV 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A A+++LVA+AVP L   DV V+D  G L+ A +             +     +   + 
Sbjct: 180 QARALKYLVASAVPGLMPEDVAVIDGKGGLIGAEDDSGAGPT-----AEDRAALLRDRVQ 234

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G+ N    V  +   +++ IR+  +DP+ +V  S    +++  S+ S      
Sbjct: 235 RLVEARVGLGNAVVEVSVDTVTESETIRQRQFDPEGRVVISTDTEEESSSSQDSGGGDV- 293

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           +V  N+P           S   + +  E+ NYE++      T     ++RL++AV+VN  
Sbjct: 294 SVASNLPDGEA--GGGDSSQSQSSETRERVNYEVSETMREVTRMPGAIKRLTVAVLVNGT 351

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G        +  LA +  +V++A G    RGD ITI SM F   +   +G V+ 
Sbjct: 352 LAAGADGAEQFVPLPEGELAALRDLVASAVGFEEARGDAITIRSMPFERPEGLGTGPVEP 411

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP-PI 485
            +   +     T+I   V  V  L++    +  +              G  ++       
Sbjct: 412 GWFS-MPLDPMTLIQIGVLAVVALILGLFVVRPILTAPAQAALPGATDGALALPGGGVEP 470

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
             A   G + + +     +               +S   +    RL  +IE  +    +I
Sbjct: 471 GGAALDGEIDDGDFGGLPALGGGGDFGGMGMVDFDSPAEEDPVDRLRGLIEERKSETVEI 530

Query: 546 LRKWARSEIEDRYTQ 560
           LR W   + EDR  +
Sbjct: 531 LRSWL-DDGEDRTEE 544


>gi|300024598|ref|YP_003757209.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526419|gb|ADJ24888.1| flagellar M-ring protein FliF [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 561

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 181/559 (32%), Positives = 302/559 (54%), Gaps = 15/559 (2%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q    + S   LGR R++ L +   +   L     +F +   ++ LYV L   D++ +  
Sbjct: 5   QFQNLYSSLKGLGRQRLMALGAAGFLVFALISIGSYFASRSSFETLYVGLTPPDISSMGR 64

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L++A I F  S +G+ + V      +AR  LA +GLP  S N+GYELFDK+ + GLTSF
Sbjct: 65  ELAQAGIPFEASLDGTKLGVAVGQAEQARALLAEKGLP-GSPNAGYELFDKLGALGLTSF 123

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQE+TRVRALEGE++RTIQ + GI AARVH+ +PD    R     PTASV+I+    S  
Sbjct: 124 MQEVTRVRALEGELSRTIQYLKGIRAARVHLYLPDQNGLRTKKQTPTASVVIKTDVASDA 183

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMN 244
            +A AI+HL+AAA+P++   +V V+ + G LL  +     ++  + L + + I  +++ +
Sbjct: 184 TAAPAIKHLIAAAIPDMKPDEVQVIGTDGTLLGGSGSPSGDVPVQMLDLERTISTQVQDS 243

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           + +AL+ +LG+DNF  + +A LN+D  Q  E  YDP+SKVERS R+ K+AQ S      +
Sbjct: 244 VRRALSPYLGIDNFEVSAIARLNIDKHQTTETKYDPESKVERSTRVIKEAQSSTDGSGRT 303

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            V+VEQN+P+ +       ++    D+KEE +NYEI++ S +TT + YK+  +S+AVVVN
Sbjct: 304 DVSVEQNIPNEAP--TTKEQNKRAQDRKEETTNYEISSHSASTTSEGYKVNNISLAVVVN 361

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           K R+ E++G+ A    I+  +AEI K+  +A G++++RGD I++ +++F ++   +    
Sbjct: 362 KKRIAEIIGKDAKTEDIEKQVAEIEKVALSAAGLDTKRGDRISVAAVEFAQSPFGDITAP 421

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
              +  +L     T I +L  L+   +V F G     RL     A     G  ++ +   
Sbjct: 422 STDWSVMLMGLAGTGIKSLTILLIAAIVVFAGFKPAMRLLLTGSAATAIEGNGAVAALAG 481

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ-----------SDLRLLH 533
              A   G+    ++   +S       +       +S  +                +L  
Sbjct: 482 PPIADAGGVTAPLDMPEMASPLLEPGANPFDSDFGSSGFAGDGMSFGRSLAFGPVEKLGA 541

Query: 534 MIEINEERFAKILRKWARS 552
           +I+ +E++   I++ W ++
Sbjct: 542 IIDRDEDQATAIMKHWVKN 560


>gi|307637039|gb|ADN79489.1| flagellar M-ring protein [Helicobacter pylori 908]
          Length = 567

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 116/576 (20%), Positives = 231/576 (40%), Gaps = 26/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVK 54
           M +   L +       L + + + L +  ++   L +    +           Y  L+ +
Sbjct: 1   MDLKVLLQRIVDFFIKLNKKQKIALIAAEVLITALLVFLLLYPFKEKDYAQGGYGVLFER 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L+ SD   I   L +  I +++  +  +I VP   V + RI LA+QG+P +S   G+E+F
Sbjct: 61  LDSSDNALILQHLQQNQIPYKVLKD-DTILVPKDKVYEERITLASQGIPKTS-KVGFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D  + FG T F Q I  +RA+EGE++RTI+S++ I+ A VHI +P    F      P+AS
Sbjct: 119 DTKD-FGATDFDQNIKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGK 229
           VM++              I++L+AAAVP L + +V +++  G+ +   +     + +  +
Sbjct: 178 VMLKLKPDMKLSPTQILGIKNLIAAAVPKLTIENVKIVNENGESIGEGDILENSKELALE 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
            L   Q  ++ +E  I   LA  + G +   + V AE +   ++  +  +DP++ V    
Sbjct: 238 QLRYKQNFENILENKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            L +  + +   Q      V  N+  V   K    +  E  +K +  +NYE+        
Sbjct: 298 NLEEKKEGAPKKQVGGVPGVVSNIGPVQGLK--DNKEPEKYEKSQNTTNYEVGKTISEIK 355

Query: 349 HDNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            +   L RL+ AVVV+        +       +   D  L +IN +V  A G N  RGD 
Sbjct: 356 GEFGTLVRLNAAVVVDGKYKIAFKDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDD 415

Query: 406 ITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
           + +++ +F     + ++ T     M    +   +    + +++  +++       +    
Sbjct: 416 VAVSNFEFNPMAPMIDNATFSEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFS 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                   +   +       +           D          + +     + R      
Sbjct: 476 ERMLEVVPDEDKEVKSMFEEMDEEEDELNKLGDLRKKVEDQLGLNASFSEEEVR-----Y 530

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +    ++   ++   +  A + +   + EI     +
Sbjct: 531 EIILEKIRGTLKERPDEIATLFKLLIKDEISSDSAK 566


>gi|239909140|ref|YP_002955882.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1]
 gi|239799007|dbj|BAH77996.1| flagellar M-ring protein [Desulfovibrio magneticus RS-1]
          Length = 547

 Score =  333 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 121/564 (21%), Positives = 229/564 (40%), Gaps = 35/564 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +     +  +  ++    + ++LA +    +  F+   F +N P    LY  +   D +R
Sbjct: 5   LKQNFEKLIQYWSNRSAAQRIMLAGLAASLVAAFVVMLFILNQPDMRVLYTNMPQEDASR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L  +   + + DNG+++ VP+  V + R+ +A +G+       G+ELFD++   G 
Sbjct: 65  VVELLKASKTPYELRDNGATVLVPAEAVYEQRLKVAGEGVMR-GQGIGFELFDEL-KVGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180
           T F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +   + TASV++     
Sbjct: 123 TDFVQRINYTRALQGELARTISEFPQVEKARVHLVLPHKSLFIEEQKKATASVVLTLRKG 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237
                K  + I +LVA +V  L    +TV D+ G+ L     +     +           
Sbjct: 183 QKLDAKQLQGIVNLVAMSVEGLTPDHITVTDTAGQSLYQPRGDGGLDGLTTTQFEYKNTF 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +E  + + L   LG     + V AEL+   + IR+ +YDP++ V RS + S+++   
Sbjct: 243 ESNLENRLEQILTPILGPGRSLAKVNAELDFAQRTIRKELYDPNATVVRSEQKSEESTSG 302

Query: 298 ETS-QPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +       T  +                    S + ++++ + +NYEIN +       
Sbjct: 303 TAAVDASGVTTTPRGGGQAVPNTNFRGEGYSGTESTQKSNRENKTTNYEINKEEQNVVTP 362

Query: 351 NYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              L+R SIAV+V+                +    L  I +IV+ A G+++ RGD I ++
Sbjct: 363 VGDLKRQSIAVIVDGTYEKVEGTKNWKFVPRSAEELERIKQIVARAAGLDAARGDEIQVS 422

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           S +F         ++  + ++   R     IN L+  +  +    L +  +         
Sbjct: 423 SFEFGAPDGSAEPSLVQTMLEYAQRLGKPFINGLLIFLFLI----LVVRPVVLALIRPRV 478

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            + E+     L       A+   +   +  A+                       + +  
Sbjct: 479 TEEEIETLERLPEGEARLALAEAVESEEAAAMLEP----------------GRQFELAKH 522

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
             L + E N E+   +L+ W + E
Sbjct: 523 LALQLFEENMEQSISLLKSWLKQE 546


>gi|94269516|ref|ZP_01291482.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
 gi|93451190|gb|EAT02103.1| Flagellar FliF M-ring protein [delta proteobacterium MLMS-1]
          Length = 511

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 124/544 (22%), Positives = 228/544 (41%), Gaps = 41/544 (7%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
            ++ +    V+ +     +A            L+  L   D   +   L E NI +R+SD
Sbjct: 1   MSQKITAGVVVALVFGGLVAMTTMAPKLDEQVLFANLSQEDAAEVVERLREMNIPYRLSD 60

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G++I VPS+ V + R+ LA +GLP      G+E+FD+V   G T F+  +   RAL+GE
Sbjct: 61  TGNAIMVPSNQVHETRLALAGEGLPRGGG-VGFEVFDEV-GLGTTDFVNRLNLQRALQGE 118

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVA 196
           +ARTI+    I  ARVHI  P    F +     TASV +R            ++I +LV+
Sbjct: 119 LARTIRQFEQIQEARVHIATPRESVFIEDEKPVTASVSLRMRGRDQLSQHQIQSIVNLVS 178

Query: 197 AAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
            AVP L    +T++D+ G+LL     ++   + G  L   Q I+      +   L   +G
Sbjct: 179 TAVPGLSDESITLVDTAGRLLYRKRGDIGPVLSGSQLEYQQNIEESARRKVESMLEEVVG 238

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
           V+  R++V A+++ +   + E ++DP+ +V RS ++  +A +   +Q       +  +  
Sbjct: 239 VNRVRASVTADIDFNRVNLTEEIFDPEEQVVRSEQVITEADQ-RGNQARGIPGAKGELAT 297

Query: 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR 374
            +D       S  +  + +   NYEI+ ++  T      ++RLS+AV+V+          
Sbjct: 298 FADEGGGGADS--SYQRSDVTRNYEISRQTRQTQEMGGGIQRLSVAVMVDGTYERVTDEE 355

Query: 375 ----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
                  + + +  +    +++S A G N  RGD + + SM F  + +       +    
Sbjct: 356 GRTTMEYRPRSEEEMEYFERLISNAVGYNRDRGDQVEVVSMPFALSAITEPEEDPMDRWR 415

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
            +++  A     LV+L+    V    +    RL    D +      ++ +      +   
Sbjct: 416 EMAQWLAM---PLVYLLIAFGVMLFVVRPFLRLLAAKDLEAKRASQRATVGRAEGEAEDE 472

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
             L        D                           R+  + + + +R A ++R+W 
Sbjct: 473 DDLSMGPRGLSDQ-------------------------ERIYRLAQSDPDRAADLVRRWL 507

Query: 551 RSEI 554
           R E+
Sbjct: 508 REEV 511


>gi|115523187|ref|YP_780098.1| flagellar MS-ring protein [Rhodopseudomonas palustris BisA53]
 gi|115517134|gb|ABJ05118.1| flagellar M-ring protein FliF [Rhodopseudomonas palustris BisA53]
          Length = 544

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 193/555 (34%), Positives = 314/555 (56%), Gaps = 14/555 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +   + + +   LG  R+++LA V L   +      ++++ P ++ LY  L   DV
Sbjct: 1   MVNREYAQKLWGNLLELGPRRLVLLALVGLAVFIGVGGGAYYISRPEFNVLYSGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+S AL +ANI F ++  G ++ V      +AR  LA +GLP SS++ GYELFDK+ S 
Sbjct: 61  TRVSAALRDANIAFDVNATGDTVLVRPGQAAQARTLLADKGLP-SSTSGGYELFDKIGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQE+TRVRALEGEIARTIQ I G+ AARVHIVMP  GSFR+    P+ASV++R  
Sbjct: 120 GLTSFMQEVTRVRALEGEIARTIQVIKGVKAARVHIVMPARGSFRREQPVPSASVVLRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS-IVQAIQH 239
            P+  ++A ++RHLVAAAVP +    VTVLDS G LL ++E        +L+ + + +  
Sbjct: 180 GPAEARTARSVRHLVAAAVPGMTPDKVTVLDSDGSLLGSDEDGVGSTPTTLANLQRVVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I+ N++KAL  +LG+DNF  +V  +L+ D +Q  E +YDPDS+V+RS+R  ++ + S++
Sbjct: 240 SIQDNVSKALTPYLGLDNFEVSVATQLSTDKRQTNETIYDPDSRVQRSVRAVREKETSQS 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              ++  TV+QN+P           S E   ++E+ +N+E+++K+I TT D + + ++ +
Sbjct: 300 LDRQTPTTVQQNLPDQQVNAGNGNNSNEEKQRREDVTNFEVSSKTITTTSDGFAVTKMFL 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AV+VN+ RL   LG  A +  I++ +AEI ++ + A GI+  RGD I +++++F+E    
Sbjct: 360 AVLVNRPRLVASLGDKASEAAIEAKVAEIAQLAATAAGIDRPRGDQIQVSAVEFIEGGRD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +    VSF D+L R   +V++A+  L    ++ + GL                    + 
Sbjct: 420 LAPVPGVSFTDVLMRQAGSVVSAVTILAVAGMLIWFGLRPAINTVL------------AG 467

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                 S  +          A  ++ Q     + NL   ++         RL  +++++E
Sbjct: 468 TKSNEASQLLMNEGAGLLAGAGGAAAQLGHEATPNLVGDVSMRAQHAPQRRLEQIVQLDE 527

Query: 540 ERFAKILRKWARSEI 554
           ++ A IL++W R E 
Sbjct: 528 KQAAAILKQWIRQEE 542


>gi|269836582|ref|YP_003318810.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM
           20745]
 gi|269785845|gb|ACZ37988.1| flagellar M-ring protein FliF [Sphaerobacter thermophilus DSM
           20745]
          Length = 535

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 128/555 (23%), Positives = 233/555 (41%), Gaps = 32/555 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q+ +   +   L   + + + +V++  +M             Y   +  L   D   I  
Sbjct: 5   QIERIRNAWNRLSMNQRVAVIAVVITAVMALGLLIATRPPQRYGIAFSGLSSEDAAAIVE 64

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I + +S +G +I VP+  V   R+  A+QGLP   S+ G+ELFDK +S GLT F
Sbjct: 65  NLRAQGIPYELSSDGGTIRVPADQVAAVRLDAASQGLPRGGSD-GFELFDK-SSLGLTDF 122

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183
            Q +   RA+EGE+ RTI  I  + AARVHIV+P+   F +     TA+V+++       
Sbjct: 123 TQRVNYQRAIEGELERTIAKIDAVEAARVHIVIPEESLFIEEQQPTTAAVVLKLKSGRQL 182

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK-LLTANEMERNILG--KSLSIVQAIQHE 240
                  I HLV+ AVPNL   ++TV+D+TG  + +  +      G  +   + QA +  
Sbjct: 183 TEAQIRGITHLVSGAVPNLQPENLTVIDNTGNPIWSGPDGGSQFAGLDERFRLQQAYEQN 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSE 298
           +E  +   +    G  +    V A LN D +  +  +Y PD      RS +  +      
Sbjct: 243 LERQLQALVNPIAGPGHAVVRVSATLNWDERSSQSEIYSPDGLQPQVRSQQEREQRTSGT 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            ++      V++N+      + P   S   +  +E  +NYE++ +         +++RLS
Sbjct: 303 VTETGGVPGVDENVQTFP--ETPGAGSQSESSSREVTTNYELSRRIEEVVQAPGQVQRLS 360

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +AV+++  ++              +   EI  ++SAA G+  +RGDTIT+T++ F +   
Sbjct: 361 VAVMLDGSQV------------DPAVAQEIQDVISAAAGLVPQRGDTITVTAVPFSDVGN 408

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                   +    +  +  T +  L  +   L+  +     L +         GE+    
Sbjct: 409 RELIPDGGT---PILEYALTALKVLGLIAIPLVALYFARRVLVK-----PEDAGELTPAL 460

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                P  +      +    I +  +   +       QS         + L+++ +   +
Sbjct: 461 ATVGGPAVTEPPMPALATQRITISETPPQLEDEDP-SQSTDRGLPQLPAHLQVIELANTD 519

Query: 539 EERFAKILRKWARSE 553
             + A++LR W   E
Sbjct: 520 PAQVAQLLRAWMSEE 534


>gi|319764515|ref|YP_004128452.1| flagellar m-ring protein flif [Alicycliphilus denitrificans BC]
 gi|330826731|ref|YP_004390034.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601]
 gi|317119076|gb|ADV01565.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans BC]
 gi|329312103|gb|AEB86518.1| flagellar M-ring protein FliF [Alicycliphilus denitrificans K601]
          Length = 564

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 125/536 (23%), Positives = 214/536 (39%), Gaps = 42/536 (7%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            F+   P Y  L+  L   D   I   L++ N+ ++ ++ G +I VP+  V   R+ LA 
Sbjct: 49  FFYGRQPEYRVLFSGLNDKDGGAIVAQLAQMNVPYKYTEGGGAIMVPAERVHDVRLRLAT 108

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           QGLP   S +G+EL  + N FG+T F + +   R LEGE+ R+IQ+++ + +ARVH+ +P
Sbjct: 109 QGLPK-GSVTGFELM-ETNRFGVTQFQERLNFQRGLEGELTRSIQALASVQSARVHLALP 166

Query: 160 DMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
           +   F +   +P+ASV++               I HLVA++VP L    V+VLD TGKLL
Sbjct: 167 NQNGFFREQQKPSASVLLTLYPGRILDRTQIAGIVHLVASSVPELAPSAVSVLDDTGKLL 226

Query: 218 TANEMERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           + +       G   + L+ VQ I+ +    I   L   +G +N ++ V AE++    +  
Sbjct: 227 SQSPDGGAGSGVDAQQLAYVQQIEQQYTRRILDLLEPVVGKNNVKAQVTAEVDFSQTEST 286

Query: 275 EIVYDPDSKVERSIRLSKDAQRSE----TSQPESAVTVEQNMPHVSDRKVPLPRSLENT- 329
              + P+   + S   S+    S        P        N P           +   T 
Sbjct: 287 SEQHRPNLSPDASAVRSQQIVESGAAPAAQPPTGVPGAVSNQPPQGSTAPINGANPPPTA 346

Query: 330 -----------DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-D 377
                       K+E  +NYE++  +  T      ++R++ AVVVN   ++E  G+ A +
Sbjct: 347 ANAQQAGQQAGGKRESITNYEVDKTTRVTRAGAGAIKRVNAAVVVNYQSVSEAPGKPAVN 406

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      + ++  +V    G N  RGD++ + +  FL     +         +++     
Sbjct: 407 KALSPEQIEQMTALVRETIGFNKERGDSVNLMNAPFLVEDTPSVDLPLWKQPEVV----- 461

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +   L + VG  L   L L  L R       +     G         + A      P  
Sbjct: 462 ELARNLGWPVGISLAVALLLLGLVRPLLKARPRGVPAMGPQEGGGQLSAIAAEELERP-- 519

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                         +      +     +        +   N    A IL+ W   E
Sbjct: 520 -----------ALPAPVQPQDLQPTAEQLRLEDARKLARDNPVAVANILKTWVNGE 564


>gi|56695122|ref|YP_165469.1| flagellar MS-ring protein [Ruegeria pomeroyi DSS-3]
 gi|56676859|gb|AAV93525.1| flagellar M-ring protein FliF [Ruegeria pomeroyi DSS-3]
          Length = 534

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 134/549 (24%), Positives = 230/549 (41%), Gaps = 17/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q      SL + +  I+    LV  +  +       SP+   LY  LE      +  +
Sbjct: 1   MQQIRSVWASLDKKKQFIVIGAALVVFLGVLGLTRMAGSPNMQLLYAGLESGSAGEVVRS 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS M
Sbjct: 61  LEQQGVPYEVR--GGSIYVPAARRDELRLTLASEGLPANGGR-GYELLDSLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   +  ARVHI       F++      +  ++ + +     
Sbjct: 118 FDAAYWRAKEGELARTIVASPHVAQARVHIANSSSNPFQRSIEPTASVSVVPSGSEVTPA 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A AIR+LVA+AV  +    VTV+DS G ++   E   +   +          ++   + 
Sbjct: 178 QANAIRYLVASAVSGMVAEGVTVVDSNGNVIGTPETPTSSTSE------DRAQQMRERVL 231

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G  N    V  +   +T+ IRE  +DP+ +V  S  + + +  S+    +  V
Sbjct: 232 RLVEARVGRGNAIVEVSLDTVTETESIRERRFDPNGRVAISTDVEERSDASKNQTTD--V 289

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S  +T    E+ NYE++            ++RLS+AV+VN  
Sbjct: 290 TVASNLPDGDGAV--GDESNSSTSATRERVNYEVSETETEILRTPGAIKRLSVAVLVNGL 347

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G S    + +  LA + ++V +A G N  RGD IT+ SM+ L N          
Sbjct: 348 PGAAQDGSSQFTPRPEEELAALRELVESAVGFNQDRGDVITLKSME-LPNLEPQGTLASS 406

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S +  L+    ++I      + TL++    +  +        A    V      S    +
Sbjct: 407 SMLQGLTFDLMSLIQMATLALVTLVLGLFVVRPIL-TKPAVSAPLLAVAPPPNQSGAQSA 465

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
               TG + + +   +            + + + S  +     RL  MI   +E   +IL
Sbjct: 466 GPALTGEIDDGSPRQNQLPGAATQQRGTVPALVGSSGT--PVDRLRAMIGDKQEETVEIL 523

Query: 547 RKWARSEIE 555
           R W     E
Sbjct: 524 RSWLEENEE 532


>gi|329888114|ref|ZP_08266712.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568]
 gi|328846670|gb|EGF96232.1| flagellar M-ring protein FliF [Brevundimonas diminuta ATCC 11568]
          Length = 545

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 138/551 (25%), Positives = 228/551 (41%), Gaps = 12/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +  F ++    G  R+  +  V      + +A    V       LY  L++ + + IS A
Sbjct: 1   MGGFTEALKRFGIGRLAAILGVAAGVAAVLVAVMLRVGQAPDALLYSNLDLREASEISAA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A I +    +GS+I V    VG AR+ LA +GL +S S  GYE+FD  +  G T F 
Sbjct: 61  LDQAGIKYSSKGDGSTIFVSRDEVGTARLMLAGKGLVTSGS-VGYEIFDNQSVLGQTEFQ 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVY 185
           Q +   RAL+GE+ARTI S+ GI +ARVHI MP    F+     PTA+V++         
Sbjct: 120 QNLNEQRALQGELARTIMSMRGISSARVHITMPRREMFQAAAIDPTAAVVVGLSGRDLSA 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI-VQAIQHEIEMN 244
               AIR++VA++VPNL    VTV D   + L A   +      +      + + +++  
Sbjct: 180 DQVRAIRNVVASSVPNLKPDKVTVTDQANRTLAAGSEDTGFTSATAEASKASTEAQMQAR 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +   +G    R  V A+++      +E  +DPD +V RS   +    +  T Q + 
Sbjct: 240 IKDIVEGVVGAGAARVQVTADIDHSRSTTQEQKFDPDGQVVRSTSTNGSQSQDTTGQQDG 299

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            VT   N+P                 +  E +NYEI+  +  T  +  ++++LS++V V+
Sbjct: 300 GVTATNNIPGGQA--PNTTPIGSTNSENTETTNYEISNTTTTTVKEPGEVKKLSVSVAVD 357

Query: 365 KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
                   G        +    + +I  +V+AA GI+  RGD + + ++ F        G
Sbjct: 358 GKYTPAADGKGEPTYAARTAEEVQQIKALVAAAVGIDETRGDKLEVVNVRFSREPSAAPG 417

Query: 423 TVQ-VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             +  S            +  L+  V   ++ F  L  L +            G   I  
Sbjct: 418 AEEGSSMFAFDKNDIMRGVELLILAVTGFVLVFFVLRPLLKAATGSGGAPALAGAGGIPV 477

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               +  V   L     +    S+       R   +RI   V   S  ++   ++ + E 
Sbjct: 478 TALDTQIVGGTLPGGAPMLAGPSDM----EQRIDIARIEGQVKASSIKKVADFVDSHPEE 533

Query: 542 FAKILRKWARS 552
              ILR W   
Sbjct: 534 STAILRSWMHE 544


>gi|326796470|ref|YP_004314290.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1]
 gi|326547234|gb|ADZ92454.1| flagellar M-ring protein FliF [Marinomonas mediterranea MMB-1]
          Length = 558

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 114/561 (20%), Positives = 219/561 (39%), Gaps = 36/561 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +       L   R L L   +   I + +AA  + + P Y  +   +   + ++I   L+
Sbjct: 16  ELLTGFNKLTVIRQLALMVGLAASIAIALAAVLWSSGPDYKPVLSSITDYNADQIVEILN 75

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
             +I F++  N  ++ V      +AR+ LA  G+ S     G E+ D+  + G + F++ 
Sbjct: 76  TNSIPFKLDQNTGALLVEDEYYHQARLKLAGSGIVSDKI-VGLEIMDQDQALGTSQFIET 134

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186
               R LEGE++RTI S+  + +ARVH+ +P    F +   +PTASV +           
Sbjct: 135 ARYRRGLEGELSRTITSLQSVKSARVHLAIPKESVFVRDTRKPTASVFLELYPGRRLDRS 194

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMN 244
             +AI +LVA+++  L   DVTV+D  G LLT  +    +   GK     + ++  +   
Sbjct: 195 QVDAIVNLVASSISQLSDKDVTVVDQRGTLLTDKDSSSELSIAGKQFDYTRRVEEVMLRR 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +N  L   +G   F++ V A+++    +  +  Y+PD    RS +  K+ + S       
Sbjct: 255 VNNILMPVVGSGRFKAEVSADIDFTAVEQTDEQYNPDLLALRSEQTLKERRSSAG-GNNG 313

Query: 305 AVTVEQNMPHVSDRKVPLPRSL------------ENTDKKEEQSNYEINTKSIATTHDNY 352
                 N P  +                          K+E   N+E++     T     
Sbjct: 314 VPGALTNQPPGAINAPEQAAVNGAPIGGGSGSSGTGQSKEETTRNFELDRSISYTKRQQG 373

Query: 353 KLERLSIAVVVNKGRLTE-VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            + RLS+AVVV+                  D  L+ +  +V  A G +  RGD++++ + 
Sbjct: 374 TVRRLSVAVVVDDVASLNTETSEIERAPWSDEELSRLTLLVRDAVGYDPSRGDSVSVINS 433

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F   +   +  V   +       F  ++   +  +  L++  + +  + +         
Sbjct: 434 PFALPEPPVAPEVIPFYKQT---WFLNLLQPALVGLFILILLLVVVRPILKTL------S 484

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            +              A  T  + +D ++L S+   +   S     R            +
Sbjct: 485 EQNKIAVAEDTEAAIFADETDEISDDQVSLVSAEDVMVPGSPEKIDR--------QLNAI 536

Query: 532 LHMIEINEERFAKILRKWARS 552
             +I    ER A+++++W   
Sbjct: 537 RGLIAEEPERVAQVVKQWVME 557


>gi|88813200|ref|ZP_01128440.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231]
 gi|88789522|gb|EAR20649.1| flagellar M-ring protein [Nitrococcus mobilis Nb-231]
          Length = 580

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 115/563 (20%), Positives = 204/563 (36%), Gaps = 48/563 (8%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
             R + L   + + +   +A   +   P Y  LY  L   D + ++ AL  ANI  R+  
Sbjct: 40  ALRQMGLIIGLALAVAAGLALFMWAQEPTYRALYANLPTQDASAVADALQTANIPHRLDT 99

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           N  +I VP+  + +AR+ LA QGLP +    G+E   +   FG + FM+     RALE E
Sbjct: 100 NSGAILVPAQRLSEARLKLAGQGLPHTGG-VGFESLRQEQGFGTSQFMETARFQRALETE 158

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVA 196
           +ARTI ++  +  +RVH+ +P+   F +    P+A+V I              AI HLVA
Sbjct: 159 LARTIDALDPVARSRVHLAIPERSVFVRDRKTPSAAVSIGLYPGRVLSSGQVLAIAHLVA 218

Query: 197 AAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           +AVP +    VT++D  G+LL+         N   + L+    ++      I   L   +
Sbjct: 219 SAVPAMTASAVTIVDQRGRLLSRVANEGEGLNATVQQLAFRHRVEEAYARRIEDLLTPIV 278

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G  + ++ V A ++   Q+  E +Y P+  V RS +  K+ +   + +         N P
Sbjct: 279 GAGHVKAQVNARVDFSAQERTEELYQPEQSVVRSEQSMKE-RTERSQKAIGVPGALSNQP 337

Query: 314 HVSDRKVPLPRSLENT------------------DKKEEQSNYEINTKSIATTHDNYKLE 355
             +    P                           +     NYEI+            + 
Sbjct: 338 PGTGTLQPAQPGKSGKPVDQQEAANQTSAPELVDSRISHTRNYEISKTIHHVRTPRGAIT 397

Query: 356 RLSIAVVVNKGRLTEVLGRSADQG---KIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           RLS+AV++++  +                   LAE+ ++V    G ++ RGDTI + S  
Sbjct: 398 RLSVAVLLDRPAIAAKTKDKTQAPPQVDPQVELAELTELVKQVVGFDADRGDTINLISSP 457

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F   +        +          +     L+  +  L++    +  L            
Sbjct: 458 FQPPEEAPPAHTPLWQQP----WVSEGGKLLLASLLGLVLILAVVRPLV----------- 502

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                  L     S    +      +   D+      +     +                
Sbjct: 503 -----HGLLGRDRSERPDSAAQAQIHGGADADADAALTGPAEPKRLGTVSDYNDRLQIAR 557

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            ++       A +++ W   E E
Sbjct: 558 DVVGKEPAVAANVMKHWLAQENE 580


>gi|315452715|ref|YP_004072985.1| Flagellar basal-body M-ring protein FliF [Helicobacter felis ATCC
           49179]
 gi|315131767|emb|CBY82395.1| Flagellar basal-body M-ring protein (FliF) [Helicobacter felis ATCC
           49179]
          Length = 567

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 113/570 (19%), Positives = 217/570 (38%), Gaps = 25/570 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKL 55
           M       Q       L + + + + S  ++ +   +    +         +Y  L+  +
Sbjct: 1   MDFKGLFQQIIDLFARLNKAQKITIVSAFVLVVAFLIFLLVYPTKGNNDLSNYGVLFEGM 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           + SD   +   L +  I ++I  +  +I +P   + + RI LA+QG+P +S   GYE+FD
Sbjct: 61  DNSDNALVLQYLQQKQIPYKIPKD-DTILIPKDKIYEERIALASQGIPKTS-KVGYEIFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
             + FG T F Q I  +RA+EGE++RTI+S++ I  A VHI +P    F      PTASV
Sbjct: 119 TKD-FGATDFDQNIKYIRAIEGELSRTIESLTPIDKASVHIAIPKDSVFVSREIPPTASV 177

Query: 176 MIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
           M++         K    I++L+AA+VP L + +V +++  G+ L  ++     + +    
Sbjct: 178 MLKIKPNMRLLPKQILGIKNLIAASVPKLTVENVKLVNENGEPLGEDDELDTTKELAQAQ 237

Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           L   Q  ++ +E  I+  LA  + G D   + V AE +   ++  +  +DP++ V     
Sbjct: 238 LHYKQNFENLLESKISNILAPIVGGRDKVVAKVSAEFDFSQKKSTKETFDPNNVVRSEQS 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  +     Q      V  N+  V    V   +  E  +K    +NYE+         
Sbjct: 298 MEEKREGYPKKQVGGVPGVVSNIGPVQG--VANDQLKEKYEKSTNTTNYEVGKTVSEIKG 355

Query: 350 DNYKLERLSIAVVVN---KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           +   L RL+ AVVV+   K                   + +IN +V  A G +  RGD +
Sbjct: 356 EFGVLTRLNAAVVVDGRYKKVDKNGTETIEYVPLSAEEMDKINALVKQAIGYSQSRGDAV 415

Query: 407 TITSMDFLENQLFNSGTVQVSFM-DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            +++ +F                 +   R+     +   +L+  L++       +     
Sbjct: 416 AVSNFEFNAKTAKYVPISAYEKFVNTTERYLGPFSSLFKYLIIGLILYVFYKKVITPFSQ 475

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                + +   K                   +          + +               
Sbjct: 476 RMLEIQPDEEEKVQSLFAMDEDDEEEIDRFGEMRKKVEDQLGLSASFNE-----EDVKYD 530

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555
               R+   ++      A + +   + E+ 
Sbjct: 531 IMLERVKGALKEKPAEVASLFQLLIKDEVA 560


>gi|209963531|ref|YP_002296446.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
 gi|209956997|gb|ACI97633.1| flagellar M-ring protein FliF [Rhodospirillum centenum SW]
          Length = 573

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 153/549 (27%), Positives = 256/549 (46%), Gaps = 5/549 (0%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    ++  +LG+ R+++LA+     ++      F ++      LY  L+ ++  RI   
Sbjct: 24  VANLLQNLRALGQRRLMLLAAAGAGVLLAVALVAFGLSRAPMGLLYAGLDDAEAGRILTQ 83

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + +++S  G +I +P   + + R+ LA QGLPS+   +GYELFD+  + GLTSFM
Sbjct: 84  LQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQGLPSAGG-AGYELFDEQGALGLTSFM 142

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVY 185
           Q + + RALEGE+ARTIQ+++G+ +ARVH+ MPD  +F    A   ASV++         
Sbjct: 143 QRLNKARALEGELARTIQTLNGVKSARVHLSMPDGEAFAPGAAPAGASVVVRTVTGGLDR 202

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
             A AIRHLVAAAVP L  G VTV+D++G +L A+    + L    +  +  A +  +  
Sbjct: 203 SQALAIRHLVAAAVPRLQPGAVTVMDASGVVLAADGGATDGLALLHAEELRSATETRLAR 262

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I + L    G  N R  V AE+++  + +RE  +DP+S+V RS +  ++ + S     +
Sbjct: 263 AIEEMLVPRFGPGNIRVRVAAEIDLGRETLREQTFDPNSRVLRSTQTVEERESSLDRDTD 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
              TVEQN+P  +        S   + ++EE +NYEI++       D  ++ RL++AVVV
Sbjct: 323 QPTTVEQNLPLEAADAQAPQGSRSESAREEETANYEISSILRERAQDAGEIRRLAVAVVV 382

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N   +    G+S  Q + D  L+ I  +V  A G + RRGD + + ++ FL         
Sbjct: 383 NGSYVPGADGKSVYQPRSDEELSRIEHLVRTAIGFDDRRGDMVAVENLQFLAGPEEPVAA 442

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                  ++      ++  +V  V  +LV  L L  L        A              
Sbjct: 443 PATE-PGLVGNDMVRLLQWVVLGVVAVLVILLVLRPLVLRSKEVPAPAAAQAAAPPQLAD 501

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             +           ++                   +   VS  +  RL  +++ + E   
Sbjct: 502 ATTPVAGQLTHEGSDLVPAGEEGSQEMDDIVDLRSVEGGVSAAALRRLAGIVDEHPEESI 561

Query: 544 KILRKWARS 552
            +LR W   
Sbjct: 562 TVLRTWIYE 570


>gi|126730036|ref|ZP_01745848.1| flagellar M-ring protein FliF [Sagittula stellata E-37]
 gi|126709416|gb|EBA08470.1| flagellar M-ring protein FliF [Sagittula stellata E-37]
          Length = 522

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 125/533 (23%), Positives = 217/533 (40%), Gaps = 14/533 (2%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +++    L  ++         ++P Y  LY  LE      +  AL    + + I   G +
Sbjct: 1   MVVLGATLAMVLAVWGLARLASAPSYSLLYAGLENGAAGDVVKALEARGVQYDIR--GGA 58

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP S     R+ LA++GLP++    GYEL D ++ FG TS M +    RA EGE+ART
Sbjct: 59  IFVPDSDRDGLRLTLASEGLPANGGQ-GYELLDGLSGFGTTSQMFDAAYWRAKEGELART 117

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           I S   I +ARVHI       F++      +  +         + A A+++LVA+AVP L
Sbjct: 118 IVSNPQIASARVHIANSSANPFQRDVTPTASISVTTTGGTLSAQQARALKYLVASAVPGL 177

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
           +   V V+D  G L+ A                     +   + + + A +GV N    V
Sbjct: 178 EPEGVAVIDGKGGLIGAEAEHGAGPT-----ADDKAALLRDRVQRLMEARVGVGNAVVEV 232

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322
             +   +++ IR   +DP+ +V  S    +   RSE       VTV  N+P  +      
Sbjct: 233 SVDTVTESELIRSRSFDPEGRVVISTDTEESTDRSENQG-GGNVTVASNLPDGNA--GGG 289

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
             S     +  E+ N+E++  +   T     ++RL++AV+VN     +  G    +   +
Sbjct: 290 DTSSSQKAETRERVNFEVSETTREITRVPGAIKRLTVAVLVNGTYTEDGNGNQTFEPLPE 349

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             L  +  +V++A G +  RGD IT+ S+ F   +   +G ++      +      +   
Sbjct: 350 DELQALRDLVASAVGYDEERGDQITLKSLSFERPEGLGTGPLEPGLFTGVIDTMRLIQMG 409

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
           ++ LV  +L  F+    L R    +    G +         P        L    ++ + 
Sbjct: 410 VLALVALVLGLFVVRPVLARGAGGEAGMAGALPAPGEGDAGPALDGEIEPLGGFGDLPVM 469

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               D            +S   +    RL ++I+  +    +ILR W   + E
Sbjct: 470 GDGPDFSGLGMVD---FDSPPDEDPVDRLRNLIQERKTETVEILRSWLEEDRE 519


>gi|327399353|ref|YP_004340222.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411]
 gi|327181982|gb|AEA34163.1| flagellar M-ring protein FliF [Hippea maritima DSM 10411]
          Length = 550

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 135/557 (24%), Positives = 239/557 (42%), Gaps = 18/557 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M     L Q  K   ++ R + +IL S + V +   +      +   Y  L+  L   D 
Sbjct: 1   MNFKLFLEQVKKFYNTMNRQQRIILFSSVGVLVAGILFILIASSKVAYAPLFTNLNAKDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           + I   L++  + +++ + G+ I VP  MV   R+ L A GLP      G+E+FDK N F
Sbjct: 61  SDIVTYLNQHGVKYKLINGGTVIEVPKDMVYSLRLDLVAAGLPKHGV-VGFEIFDKQN-F 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             T+F++ I  +RALEGE+ RTI +I+ I +A+V+I +P    F +    PTAS+++   
Sbjct: 119 STTNFVENINYIRALEGELTRTIANINEIKSAKVNIAIPKPTIFTESQQPPTASIVLDLY 178

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQH 239
            P   +   AI+ LVA+AVP L   DVT++DS G LL+     E+ +    L   Q I+ 
Sbjct: 179 KPLTRQQIVAIQKLVASAVPGLSYKDVTIVDSDGNLLSVNIPDEQLLTANELKYKQFIEQ 238

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             +  I   LA  LG D F  +V  EL++   + + ++YDP+S     +    +   S T
Sbjct: 239 RYKSRIKSMLAPILGKDKFVVSVDVELDLSKIKKKSVIYDPNS---VVVSEENEESTSTT 295

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                   V  N+   +            + K +  +NY++      T     K++++S 
Sbjct: 296 PTSGGVPGVISNI--DNKTNAAAASGTAKSSKSKTITNYDVGRTETITEGPLIKIKKISA 353

Query: 360 AVVVNKGRLTEVLGRS-----ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           AVVV+         +        +    + ++ I + V +A G +++RGD +T+T M F 
Sbjct: 354 AVVVDGIYEPVKNKKGKVVSYKFKSLPQNTISTIQQAVMSAIGYDNKRGDKVTVTCMKFA 413

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
            +     G V +   +++    +    ALV  +  L         ++ +  +   +  + 
Sbjct: 414 MSGEKQMGNVSLGGGNMVVNLASYYKYALVAFLLALFYFLFLRKFIKNVMTVSSVRAKKT 473

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G +  +   ++     G    +     +S  D        + R N         ++   
Sbjct: 474 EGTAETTSEELTENEVKGKSIREIEEEIASKLDEEGVVDEEKIRANMMED-----KIREA 528

Query: 535 IEINEERFAKILRKWAR 551
            E N E  A +L+    
Sbjct: 529 AEENPEEIANLLKTLIS 545


>gi|121533763|ref|ZP_01665590.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1]
 gi|121307754|gb|EAX48669.1| flagellar M-ring protein FliF [Thermosinus carboxydivorans Nor1]
          Length = 511

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 138/561 (24%), Positives = 233/561 (41%), Gaps = 60/561 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           + D   Q  +   SLG+ +  LI AS   V   + + + ++     Y  LY  L++ D  
Sbjct: 1   MADWKEQSLQIWRSLGKKQRYLIAASAFFVFAAILLWSYWWGGRIDYVPLYTGLDLKDAG 60

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L E  +  +I  NGS+I VP+  V + R+ LA+QGLP      G+E+FD+   FG
Sbjct: 61  EVVGKLKEMKVPHQIEANGSAILVPAKDVHRVRLELASQGLPR--GYKGFEIFDQT-KFG 117

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T F Q++  ++AL+GE+ RTI+ ++ +  ARVHIV+ +   ++K     TASVM++   
Sbjct: 118 ITDFQQKVYLLQALQGELTRTIEQMAEVEKARVHIVLAEDSLYKKNEKPATASVMLKLRP 177

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQ 235
                 +    I +LVA ++  L   +VTV+D+  ++L          G      L + +
Sbjct: 178 GVQLSREQVRGIVNLVAHSIQGLKPENVTVVDNYARVLNDQVDTPFTAGTIPVTQLELTK 237

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            IQ +++ N++  L   LG     + V  ELN D + I   +++P   D  + RS++   
Sbjct: 238 KIQEDLQKNVHTLLEQVLGPGKAAARVSVELNFDQRTIDRQIFEPIVDDKGIIRSMQEMS 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +  R              N+P      V    +  N +KKE   NYEIN           
Sbjct: 298 ETYRGSAPVAGGVPGTTANIPG----YVTGANNQSNYEKKEVTRNYEINETKEKVVTAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RL++AV+V+                  +    I K V++A G+N  RGDTI++ S+ 
Sbjct: 354 AIKRLTVAVLVD-------------ASIDRAKQESIAKTVASAVGLNPSRGDTISVESIP 400

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F           + +F     +     I A    +  LL          RL      +K 
Sbjct: 401 FSTELQERQRREEQAFEQQQRQELWLKIGAAAIGLIALLYIM-------RLFVRRQQQKE 453

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E    +I+ P P S  + +  +                               Q    + 
Sbjct: 454 ESEVVTIVPPQPQSVPIKSKELTPQE-----------------------KERLQQRETVE 490

Query: 533 HMIEINEERFAKILRKWARSE 553
            + +   E  A ++R W   E
Sbjct: 491 KLAKSKPEEVAHLIRTWLAEE 511


>gi|315127319|ref|YP_004069322.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913]
 gi|315015833|gb|ADT69171.1| flagellar MS-ring protein [Pseudoalteromonas sp. SM9913]
          Length = 571

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 86/561 (15%), Positives = 212/561 (37%), Gaps = 27/561 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   +F +   +   R + L   + + + + +    +   P    L  K++  ++    
Sbjct: 27  EQKSGYFSALGGVDVLRQITLIVALAICLAIAIFVIIWARQPDMRPL-GKMQTEELIETL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    ID+++  +G+ +SV  +     ++ +  +GL      SG ++  +   FG++ 
Sbjct: 86  DFLDAQKIDYQL--DGNVVSVDETEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            ++        E ++ARTI+ ++ +  A+V + +P    F +   +P+A+V++       
Sbjct: 143 RLERERLKHGREQQLARTIEELNNVTRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202

Query: 185 Y--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240
              +  +++  ++A+AV  L+   VTV D  G+LL +                 +  + E
Sbjct: 203 LDGEEVDSVVDMIASAVQGLEPSRVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++    +  +  Y+PD    RS    ++       
Sbjct: 263 YLEKIDSILIPVVGLGNYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENN--IGG 320

Query: 301 QPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                     N P V+               +  +   KE   NYE++T           
Sbjct: 321 LAVGIPGALTNQPPVNSTIPEDAMAGGAGTATSPSRTHKEATRNYELDTTISHKRQQTGV 380

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + R+S++V V+        G +    +    L+ I +++    G + +RGD + + ++ F
Sbjct: 381 IRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPF 440

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
           +         + +   D     F  ++  ++  +  +++    +  + +     D    E
Sbjct: 441 VREDSALDFELPLWEQD----WFMKMMRLVLGALVIIVLILAVVKPMLKRLIYPDNTLEE 496

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               S+ S   +  +    L  + + A    + D      +L      +  +     +  
Sbjct: 497 YDEDSLSSGVDLGDSTLDMLNNDFDSASVGFSSDGTLRLPDL------HGDEDLLKAVRA 550

Query: 534 MIEINEERFAKILRKWARSEI 554
           ++    E  +++++ W   + 
Sbjct: 551 LVANEPELSSQVVKAWLTEDD 571


>gi|77359741|ref|YP_339316.1| flagellar MS-ring protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874652|emb|CAI85873.1| flagellar biosynthesis; basal-body MS(membrane and
           supramembrane)-ring and collar protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 571

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 89/561 (15%), Positives = 216/561 (38%), Gaps = 27/561 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   +  + + +   R + L   + + + + +    +   P    L  K+   ++ +  
Sbjct: 27  EQKSGYLSALSGVDVLRQVTLIIALAICLAIAIFVIIWARQPDMRPL-GKMPTEELIQTL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    ID+++  +G+ +SV  S     ++ +  +GL      SG ++  +   FG++ 
Sbjct: 86  DFLDAQKIDYQL--DGNVVSVDESEYQNIKLLMTREGL-DQGPTSGSDIIMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++        E ++ARTI+ ++ I  A+V + +P    F +   +P+A+V++       
Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240
              +  +++  ++A+AV  L+   VTV D  G+LL +                 +  + E
Sbjct: 203 LNSEEVDSVVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLSARSRKEYDLERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++  + +  +  Y+PD    RS    ++       
Sbjct: 263 YLEKIDSILIPIVGLSNYTAQVDLSMDFSSLEETQKRYNPDLPAVRSETTFEENN--IGG 320

Query: 301 QPESAVTVEQNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                     N P V+               +  +   KE   NYE++T        +  
Sbjct: 321 LAVGIPGALSNQPPVNSDIPEVAGQGGAGSVTSPSRTHKEATRNYELDTTISHKRQQSGT 380

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + R+S++V V+        G +    +    L+ I +++    G + +RGD + + ++ F
Sbjct: 381 IRRISVSVAVDYLPTVGENGETTMTPRSVEALSNIRRLLQGGVGFDIQRGDALEVVTVPF 440

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
           +   +  S  V +   D     F  ++  ++  +  +++    +  + +     D+   E
Sbjct: 441 VREAVDMSFEVPLWEQD----WFMKIVRLVLAALVIIVLIMAVVKPMLKRLIYPDSTLDE 496

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               ++ S   I       L  + + A    + D      +L      +  +     +  
Sbjct: 497 YDEDALSSGVDIGDNSLDMLNKDFDSASVGFSSDGTLQLPDL------HGDEDLLKAVRA 550

Query: 534 MIEINEERFAKILRKWARSEI 554
           ++    E  +++++ W   + 
Sbjct: 551 LVANEPELSSQVVKAWLTEDD 571


>gi|117923585|ref|YP_864202.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1]
 gi|117607341|gb|ABK42796.1| flagellar M-ring protein FliF [Magnetococcus sp. MC-1]
          Length = 551

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 125/557 (22%), Positives = 221/557 (39%), Gaps = 37/557 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
                  SL  T    +    +  + +  A  +F   P    LY  L   +  RI   L 
Sbjct: 18  SLGGLFGSLPLTGRNGVIIAAMASVFILAAIIWFATRPSMKVLYSGLPDLESARIVEQLG 77

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           +  + + +   G++I +P   V   R+ +A  GLP S+   G+E+FD  +  G+T F+Q 
Sbjct: 78  KLGVPYELGSGGTTIRIPEDKVYDVRLEMAKAGLPKSTDGVGFEIFDNQSLMGMTDFVQR 137

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188
           +   RAL+GE+AR+++SI+ +  ARVH+V+P    F       TASV++   +       
Sbjct: 138 MNYQRALQGELARSVESIAAVEKARVHLVLPKKSMFAAEERTATASVVMELTHALNKTQI 197

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQHEIEMN 244
           + I H+VA+AV  L    VT+LD  G L+    T +   R     +L++    + +IE  
Sbjct: 198 DGITHMVASAVEGLSQDQVTLLDQKGNLIAGGKTEDLDGRMPTDDALALQSMKEKKIEER 257

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L   LG D     + AEL++D +Q +E  YDPD +V  S     ++ R        
Sbjct: 258 VQSLLDRVLGPDKSIIRITAELDLDKKQRQEESYDPDGQVPLSTNTVTESSRGM-FGTGG 316

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
              V  N P+ +        S +  D + EQ N+ +  K          + RLS+AV+++
Sbjct: 317 VPGVIPNDPNQTA-VAGGTGSQQTRDVEREQVNFLVPKKVTTVQEAVGDIRRLSVAVMID 375

Query: 365 KGRL--------TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
                        +    +    +    + ++ +I+    G +++RGD+I +T+  F   
Sbjct: 376 GTYEAVKDKDGNIDPEKPAVYTPRSTEEMEQLKRIIMQTVGFDAKRGDSIEVTNTAFEPL 435

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                         +       +       +   L+ F  +  L     I + ++ +   
Sbjct: 436 PPPLDVKSPW----LSREFQLEMAKYGAIALLAFLLVFFVMRPLVTKLLIPEEEQDDRLP 491

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            ++        A   G +P D                   S I   +  +S      MI 
Sbjct: 492 GTVADLERQLLAEGVGTIPVD-------------------SPIRMKIPDRSLQLAQQMIA 532

Query: 537 INEERFAKILRKWARSE 553
            N E   +I+R W   +
Sbjct: 533 DNLEEAREIIRSWMAQD 549


>gi|294678998|ref|YP_003579613.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003]
 gi|294477818|gb|ADE87206.1| flagellar M-ring protein FliF [Rhodobacter capsulatus SB 1003]
          Length = 551

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 137/564 (24%), Positives = 240/564 (42%), Gaps = 27/564 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q       L  TR +++A   ++     +A   F +      LY  LE +    +  A
Sbjct: 1   MQQLMAVWQGLDTTRRVLVAGATILMFAAILALSSFASRSDMALLYAGLEGARAGEVVAA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + + +   G SI V ++   + R+ LA +GLP++   +GYEL D ++ FG TS M
Sbjct: 61  LDARAVPYEVR--GDSIYVDAARRDELRMALAGEGLPATGG-AGYELLDGLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   I AARVHI  P   SFRK      +  +  A       
Sbjct: 118 FDAAYWRAKEGELARTIVANPMIRAARVHIAAPSGQSFRKENHPTASVTVTTASGGLSPT 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A+A++ LV++AV  +   DV+++DS   L++  +   N              E+  N+ 
Sbjct: 178 HAKALKFLVSSAVQGMSPDDVSIIDSVAGLISTGDDVFNPAAN------DRAEELRSNVE 231

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G  N    V  +   + + I E   +PDS+V  S    + +++S+ ++P  AV
Sbjct: 232 RLLEARVGYGNAVVEVSVQTVTEREAITEKRIEPDSRVAISTETQERSEKSDDTKP-GAV 290

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P          +S     +  EQ N+E++  +     +   ++RL++AV+V+  
Sbjct: 291 TVASNLPQGDA--ANGGKSQSQASETREQVNFEVSETTREVLRNPGDIKRLTVAVLVDGV 348

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +  G +A   + D  LA + ++V++A G + +RGD ITI SM F E           
Sbjct: 349 EGKDANGVTAITPRTDEELAALKELVASAVGFDEKRGDVITIRSMAF-EPLAETGTEATS 407

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S           +I   V  +  L++    +  +          +  +     +      
Sbjct: 408 SLFASAPLDTMQLIKIAVLAIVALILGLFVMRPILAQRAAAAEAERAMNLPGGMIGSDEG 467

Query: 487 SA-VTTGLMPNDNIALDSSNQDIFSHSRNLQSRI------------NSYVSKQSDLRLLH 533
           +    TG + + ++ + S N        ++   +             S  +     RL  
Sbjct: 468 TGRALTGEIADGDMPIGSMNVVSDFDIGDMPMTMGTGNFGDMGMGGESGQASDPVARLKK 527

Query: 534 MIEINEERFAKILRKWARSEIEDR 557
           +IE  +    +ILR W   E E+R
Sbjct: 528 LIEERQAESVEILRSWM-DEAEER 550


>gi|114569237|ref|YP_755917.1| flagellar MS-ring protein [Maricaulis maris MCS10]
 gi|114339699|gb|ABI64979.1| flagellar M-ring protein FliF [Maricaulis maris MCS10]
          Length = 551

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 136/553 (24%), Positives = 238/553 (43%), Gaps = 10/553 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +   F+   + G  R+  +  + +      M     +       LY  L+ S+    S  
Sbjct: 1   MNALFEQFRAFGAGRLTAIFGLAVGVAAALMYFSGAMGGASQSLLYSGLDPSEAVATSQL 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +ANI + I + G++I V    V +AR+ +A+ G P S ++ GYE+FD+ +SFG  SF+
Sbjct: 61  LDQANIPYEIREGGTAIYVNRDQVDEARVRVASNG-PLSGASVGYEIFDRQDSFGQNSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q +   RA EGE+ARTIQS++ + +ARVH+ +P+   F +    PTA+V I        +
Sbjct: 120 QNLNAKRATEGELARTIQSLNYVNSARVHLNLPERRLFSRDQQSPTAAVTISTAGRLNSE 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ-AIQHEIEMNI 245
               IR++VA++   +    V++ D  G+ L +    ++     +   +  I+ ++  NI
Sbjct: 180 QVRVIRNIVASS-SGIAPTGVSIADDRGRQLASGSDGQSAGSMIMDERRGEIEAQLRQNI 238

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              +   +G    R  V AEL+  +       YDP+  V RS    +D    +    ++ 
Sbjct: 239 LDIVEGVVGAGAARVQVNAELDRQSITQSSETYDPNGAVIRSRERGEDLSNDQDGANQNR 298

Query: 306 VTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           V+  +N+P   D          +  +   E+ NYEI++ +     +   + RLS+AV V+
Sbjct: 299 VSASENLPDAGDGAGAEGSGSRSNRESTSERVNYEISSTTRTEIIEAGAINRLSVAVAVD 358

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR---RGDTITITSMDFLENQLFNS 421
               T   G    + +  S +  I  +V +A G  S    R D +T++ ++F        
Sbjct: 359 GVLETAEDGTVTWRERPQSEIDRIEALVRSAMGFVSEPGVRQDLLTVSQIEFARTD-PLL 417

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
           GT   S M              V  V  LL+ FL    L +  +     +G     + + 
Sbjct: 418 GTAAASGMSFSKSDIMRAAEIGVMFVTALLIIFLVARPLVKGASGMAMPQGLALAGAGMD 477

Query: 482 PPPISSAVTTGL--MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                +   T L   PN  +AL S+             +I+  V   S  ++ +++E + 
Sbjct: 478 GAVAGAPAPTALPSQPNRPVALPSAGGAGGREDSIDIEKIDGQVKASSLKKVANIVESHP 537

Query: 540 ERFAKILRKWARS 552
           E    ILR W   
Sbjct: 538 EESISILRTWLHE 550


>gi|225850271|ref|YP_002730505.1| flagellar M-ring protein FliF [Persephonella marina EX-H1]
 gi|225645356|gb|ACO03542.1| flagellar M-ring protein FliF [Persephonella marina EX-H1]
          Length = 529

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 122/563 (21%), Positives = 228/563 (40%), Gaps = 46/563 (8%)

Query: 1   MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M   + L +  +    +L    I ++ + +L+   L + A   V    Y  LY  L   D
Sbjct: 1   MDFNEILKKTSEFIKKNLNPRNIALIIAGLLLITFLGIIAFKTVTKEEYGVLYTHLNPDD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L E NI +++  +GS I VP + V + R+ LAA+GLP S    G+E+F +   
Sbjct: 61  AGSILSVLQEENIPYKVEGDGSIILVPRNKVHEIRLKLAAKGLP-SGKTVGFEIF-EEPK 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR- 178
            G+T F + +  +RALEGE++RTI+ +  +  A+V+I +P    F +    P AS++++ 
Sbjct: 119 MGITQFQENVNYLRALEGELSRTIRQLDPVRDAKVNIALPKESIFVREEDEPKASIILKL 178

Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIV 234
                   +  +A+  LV+ AVP L   +VTV+D+ G++L+    E  +     K++ I 
Sbjct: 179 WPGKDLTKEQVKAVVFLVSHAVPKLKPENVTVVDNRGRVLSDILEEDTVTAVSDKNVEIK 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++ +IE N+   L+  LG          E+     Q ++ +YDPD     S R  ++ 
Sbjct: 239 RKLERQIEKNVQTMLSRALGEGKVVVRATVEIETGKLQQQDEIYDPDRTAVVSERKIQEK 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
           ++    Q         N+P V D        ++  ++K+   NY +    + T    + +
Sbjct: 299 EKEFKQQEALPPGTPTNVPPVIDETGQG-SIIKQKERKDTTKNYNVTKSLVNTQKPIFNI 357

Query: 355 ERLSIAVVVNKGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
           +++S+ V+++                   + +  L     +V +A G + +RGD +T+ S
Sbjct: 358 KKISVGVLIDGKYEKVKDEEGNEKYRFIPRSEEELKVYESLVKSAIGYDPKRGDQVTVVS 417

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F           +              I  LV +    L        +         K
Sbjct: 418 VPFEAKPEVAVAEERKIED----------IILLVAIGILGLAVLAVAAIILVKVLKGKKK 467

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             E     I      + A+    M    +                         +    +
Sbjct: 468 VPEAVPPGISPEAAAAYAIHEKEMEEFQL-----------------------EREPIYRK 504

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L+ + + N E  A+++ KW + E
Sbjct: 505 LVDLAQENPELIAELITKWMKEE 527


>gi|294084401|ref|YP_003551159.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663974|gb|ADE39075.1| flagellar M-ring protein FliF [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 572

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 119/559 (21%), Positives = 221/559 (39%), Gaps = 23/559 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +L   +  TS    R  +     ++  +  +    F+ +P    LY  L  S+  R+  A
Sbjct: 25  MLSTVRRFTSDPAVRRALPTFAAIIFAVAGLFVFVFMQAPQRTTLYASLPESEKARVVEA 84

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  + ++  +      + VP+S   +A++ LAAQGLP +S   GY     +   G +  +
Sbjct: 85  LINSGVEVTLDPTTGDVLVPTSDFHQAKMSLAAQGLP-TSVPDGYASVGDIP-MGSSRSV 142

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY- 185
           + +   ++ E E+AR+I  I G+V+ARVH+ +P+   F +    PTASV I+  N     
Sbjct: 143 ENVRLKQSQEIELARSIGEIDGVVSARVHLAIPEKSVFARNATPPTASVFIQMNNGRTLG 202

Query: 186 -KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242
            +  EA+ HLV+++VP++   DVTV+D  G LL+    +M   +    L     +++   
Sbjct: 203 SQQVEAVVHLVSSSVPSMAKTDVTVVDQFGALLSNPTNDMASLLSDSQLQHRIRLENIYR 262

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   ++  +G  N  S +  +++    +  E   DPD    RS + S D +       
Sbjct: 263 NRVISLVSPIVGAGNVTSQINIDIDYTRSETTEERVDPDGNALRSEQKSVDMKSDAN--A 320

Query: 303 ESAVTVEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                   N P +              +   +T    E  NYE++     T   + ++  
Sbjct: 321 RGIPGATANRPPLQSEIDSVQADDAGAKGSVSTQSSNEVRNYEVSRTVSTTQSPSTRIVG 380

Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +  AV V +K  +    G           LAEI K+V+ A GI++ RGD +T++S  F+ 
Sbjct: 381 IQAAVLVRDKEVVNPETGLMEVVPFTPEKLAEIEKLVANAIGIDAERGDKLTVSSSAFV- 439

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                S    V+           ++   + L+   +V    +  L     +  A      
Sbjct: 440 -----SAIEGVTKAWYDMEWAINLMKQGMTLLIMGVVVLGVIRPLIGRIMVPAAVGAPGE 494

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               L       A+      +             + S  +    N+Y  K +   +  ++
Sbjct: 495 AMVSLDDDLGGEAIEVQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDKVAV--IRMIV 552

Query: 536 EINEERFAKILRKWARSEI 554
                R + + +     +I
Sbjct: 553 GDEAGRVSNVFKSMMERDI 571


>gi|303248346|ref|ZP_07334607.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ]
 gi|302490254|gb|EFL50168.1| flagellar M-ring protein FliF [Desulfovibrio fructosovorans JJ]
          Length = 546

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 225/564 (39%), Gaps = 36/564 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
                 +  +  ++    + ++L  +    +  F+   +F+N P    LY +L   D  R
Sbjct: 5   FKQSFEKLIQYWSNRTAAQRILLGGLAASTVAAFLVMIYFLNQPEMRVLYTRLAPEDAAR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L  +   + + DNG++I VP+  V + R+ +A +GL       G+ELFD++   G 
Sbjct: 65  VVEQLKASKTPYELRDNGATIMVPAESVYEQRLKIAGEGLMH-GQGVGFELFDQL-KVGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180
           T F+Q I   RAL+GE+ARTI     +  ARVH+V+P    F +   + +ASV++     
Sbjct: 123 TDFVQRINYTRALQGELARTITEFPQVEKARVHLVLPQKSLFIEEQKQASASVVLTLKRG 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237
                K  + I +LV+ AV  L    +T+ D+TG+ L   + +     +           
Sbjct: 183 QKLDAKQLQGIVNLVSMAVEGLTPEHITITDTTGQSLYQPQGDSGLAGMSNSQFEFKNTY 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR- 296
           +  +E  I + L   +G          +L+   + IR+ +YDP+  V RS + +++    
Sbjct: 243 ESNLENRIEQLLTPIVGPGRSIVKANVDLDFSQRTIRKELYDPNVTVVRSEQKNEETTSG 302

Query: 297 ------SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                 S  +             +          S + + ++   +N+EIN +       
Sbjct: 303 TAAVDASGQTVTPRGGGAAVPNNNFQGSGYSGTESTQKSSRQNSTTNFEINKEEQNVVTP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              L+R SIAV+V+   + +    +     +    L  I ++V+ A G++  RGD I ++
Sbjct: 363 VGDLKRQSIAVIVDGTYVKDKDKETYTFVPRKAEELERIKQVVARAAGLDPSRGDEIQVS 422

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           S +F      +  ++  + ++   R     +N L+  +  +    L +  +         
Sbjct: 423 SFEFGAPDGSDQPSLVQTMLEYAQRLGKPFLNGLLLFLFLI----LVVRPVVLALIRPRV 478

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            + E+     L       A+           L+   +   + +  L              
Sbjct: 479 TEEEIETLERLPEGEARLALAEPEESEGLGMLEGGKELELAKNLAL-------------- 524

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
               + E N E+   +L+ W + E
Sbjct: 525 ---QLFEENMEQSMTLLKAWLKQE 545


>gi|99082787|ref|YP_614941.1| flagellar MS-ring protein [Ruegeria sp. TM1040]
 gi|99039067|gb|ABF65679.1| Flagellar M-ring protein [Ruegeria sp. TM1040]
          Length = 571

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 142/570 (24%), Positives = 229/570 (40%), Gaps = 30/570 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            + Q       L + + ++     L  I  F       N P    LY  LE S    +  
Sbjct: 13  NVQQIKNVWAGLDKRKRMMAIGATLAVIFTFFLMSLVANKPSMQLLYAGLESSSAGDVVS 72

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL ++ +D+ +   G SI VPSS   + R+ LA+QGLP++    GYEL D ++ FG TS 
Sbjct: 73  ALEQSGVDYEVR--GGSIYVPSSKRDELRMTLASQGLPANGGK-GYELLDSLSGFGTTSQ 129

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           M +    RA EGE+ARTI +   +  ARVHI       F++      +  +    +P   
Sbjct: 130 MFDAAYWRAKEGELARTIVANPHVSQARVHIANTGSNPFQRTIEPTASVSVTPMGSPITP 189

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
             A AIR LVA+AV  L + +V V+D+ G L+ + E                   +   +
Sbjct: 190 SQANAIRFLVASAVAGLAVDNVAVIDANGALIGSPEAAAAAGAG----TDDRSQTLRERV 245

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + + A +G  N    +  E   DT+ IRE   DP S+V  S  + +    S+       
Sbjct: 246 LRLVEARVGQGNAVVEISVETITDTESIREKRVDPQSRVAISTDVEERIDSSQNQ--AGE 303

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           VTV  N+P           S  +T+   E+ NYEI+            ++RL++AV++N 
Sbjct: 304 VTVASNIPDGDA--GNGEGSKASTNATRERVNYEISETEKEIVRGPGAIKRLTVAVLING 361

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                  G +A + + +  L  + +++SAA G ++ RGD IT+ SMD    +      V 
Sbjct: 362 VTTETAEGEAAFEPRPEEELEALRELISAAVGFDAERGDVITLKSMDLPNVE-PLGTEVT 420

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR--LHNIDDAKKGEVGGKSILSPP 483
            S  D L     ++I      +  L++    +  +      ++      +      L   
Sbjct: 421 SSVFDNLYFDVMSIIQMAALAIVALILGLFVVRPILAGNGASVQALPSPDGVAAGGLPEL 480

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI----------------NSYVSKQS 527
           P  S    G M N ++  + +              +                   +S   
Sbjct: 481 PDMSGGDAGFMTNPDLGANIALDGEIDGGDGGFQPLGDLPGMGDGLAGFGGGGGGMSDDP 540

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557
             RL  MI   +E   +ILR W     E+R
Sbjct: 541 VDRLRSMIGERQEETVQILRGWLEENNEER 570


>gi|146278778|ref|YP_001168937.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557019|gb|ABP71632.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
          Length = 543

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 127/549 (23%), Positives = 224/549 (40%), Gaps = 21/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         L   R  I+        +       F N P    LY  L+ +    +  A
Sbjct: 14  VQNLISIWNDLDGRRRAIVVGATAAMFLAIFGLSQFANKPRMALLYAGLQGAVAGEVVAA 73

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    + + +   G SI V +S   + R+ LA +GLP++   +GYEL D ++ FG TS M
Sbjct: 74  LEAQGVAYEVQ--GDSIHVDASRRDELRMKLAGEGLPATG-TAGYELLDGLSGFGTTSQM 130

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +   +RA EGE+ARTI +   + AARVHI       F++      +  +  +      +
Sbjct: 131 FDAAYLRAKEGELARTILASPQVKAARVHIAPAAAQLFQRERRPTASVTVTTSGGNLTME 190

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A A +HL+A+AV  +   DV+V+D+ G L+ A +    I G           E+  N+ 
Sbjct: 191 QARAFKHLIASAVAGMQPEDVSVIDTVGGLIRAGDTGDGIAGT----AGTRAAELRRNVE 246

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G       V  ++   ++ I E  +DP  +V  S  L +    S    P+  V
Sbjct: 247 RLLEARVGPGRAVVEVSLDVETASETIVEKTFDPKGRVPISSELQEKTSSSTQPAPD--V 304

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P          +S   + +  E +N+E++            + RL++AV+V+  
Sbjct: 305 TVASNLPEGDAAGGSAGKSN--SSETRETTNFEVSQTQRELVRQPGTVRRLTVAVLVDGV 362

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           R+    G+   Q + +  LA + ++V AA G++  RGD +T+ S+ F       +     
Sbjct: 363 RMAGEDGQLTWQPRPEEELAVLRELVGAAVGLDESRGDRLTLRSLIFETPPDLGTLAEAG 422

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
               + S    ++I   V  +  L++    +  +  L    D           L     +
Sbjct: 423 MLGRLGSFDLMSLIQIAVLALVALVLGLFVVRPV--LTARRDPALSSATPPLALPGYGGT 480

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +   TG + +        + D+        + ++         RL  +IE  +    +IL
Sbjct: 481 NEALTGEIDD--------STDLPDFPMVASAPLDFDDEPDPVARLRRLIEERQAESVEIL 532

Query: 547 RKWARSEIE 555
           R W   + E
Sbjct: 533 RGWMEPQRE 541


>gi|254510010|ref|ZP_05122077.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11]
 gi|221533721|gb|EEE36709.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium KLH11]
          Length = 530

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 134/549 (24%), Positives = 232/549 (42%), Gaps = 21/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q      SL R + +I+A  + +  +  +A    V +P    LY  LE      I  A
Sbjct: 1   MQQIGTVWASLDRRKQIIVAGAVALVFLGVLAMSRIVTAPSMTLLYAGLESGAAGDIVRA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + I   G SI VP +   + R+ LA++G+P++  N GYEL D ++ FG TS M
Sbjct: 61  LDQRGVAYEIR--GGSIYVPGAQRDELRLTLASEGMPANG-NRGYELLDSLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI     +  ARVHI       F++  A   +  ++ +       
Sbjct: 118 FDAAYWRAKEGELARTIVGSPYVSQARVHIANGSANPFQRSVAPTASVYLVPSGAQITGD 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A+AIR LVA+A+  L   +VTV+DS G ++ A E             Q     +   + 
Sbjct: 178 QAKAIRFLVASAISGLAPENVTVVDSNGAVIGAQETAAAADTADDKARQ-----LREKVL 232

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G  N    V  +    T+ IRE  +DP  +V  S  + + +  +     +  V
Sbjct: 233 RLVEARVGTGNAVVEVSVDTVTKTESIRERRFDPKGRVAISTDVEERSDNTRNQSSD--V 290

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           +  N  +  E+ NYE++   +        ++RL++AV+VN  
Sbjct: 291 TVASNLPDGDG--AGGDETNSNATQTRERVNYEVSETELEVHRAPGAIKRLTVAVLVNGA 348

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           R+ +  G  + +      L  + ++V++A G ++ RGD IT+ S+D    +         
Sbjct: 349 RMVDGNGIESFEPMPQPELDALEELVASAVGFDADRGDVITLKSLDLPAVE-PQGTLASA 407

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S    +     ++I   V  + +L++    +  +        A             P ++
Sbjct: 408 SIWQRIHLDAMSLIQMAVLALVSLVLGLFVIRPILTKSAAAPALLPAANAPEADVAPYLT 467

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
             + TG   N     D    ++ +        I +   + +  RL  MI   +E   +IL
Sbjct: 468 GEIATGDAGNFTPLPDPGQSNVPA--------IANAPGEDAVDRLRAMIGDKQEETVEIL 519

Query: 547 RKWARSEIE 555
           R W     E
Sbjct: 520 RSWLEEGEE 528


>gi|163744330|ref|ZP_02151690.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45]
 gi|161381148|gb|EDQ05557.1| flagellar M-ring protein FliF [Oceanibulbus indolifex HEL-45]
          Length = 567

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 241/568 (42%), Gaps = 21/568 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q  ++   LG  R+ +L  + L            + +P Y  +Y +L     +++   
Sbjct: 1   MNQIVENLKDLGPKRLALLGGIGLAITAAVFIGARTILAPTYVPVYSQLSPGTASQMMQT 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A +   +S NG +ISV  + + +AR+ LA  GLP      G+E+FD ++  G+ SFM
Sbjct: 61  LEQAGLTVDLSRNGDTISVAENDIARARMALADAGLPGEGVP-GWEIFDNMSGMGMNSFM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSV 184
           Q++ R+RALEGE+AR+IQ+ISGI AARVH+V+P+  +F +  A  + SV++R  A     
Sbjct: 120 QKVNRLRALEGELARSIQTISGIKAARVHLVLPERAAFSRSRAEASGSVIVRSQANASMT 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
              A+AI+ LVA+AV +L+  +VTVL ++G+ + A +   +           I+ ++   
Sbjct: 180 RSQAQAIQALVASAVADLEAQNVTVLSASGETILAKDDGGSSDFSLQGQRSMIEEQLAQK 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L A +G  N R  V  +L  + +      +DP  +V RSI                
Sbjct: 240 VESILNARVGPGNARVRVSVDLTTEREVRVSRTFDPAQQVARSIETRVRNSNETD-PATG 298

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            V V  N+P                 + +E  NYEI +       +   +ER+S+AV+VN
Sbjct: 299 TVDVANNIPDELRDDAGGGAGQSTRSENDEIINYEIGSVQSEMVREPGDIERISVAVLVN 358

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
               T   G      + +  +  ++++VS A G +  RGD + + S+ FL+     S   
Sbjct: 359 GSYGTLPDGSEGYIERSEEEMQRLSQLVSTAIGFDQNRGDQVQVDSLQFLDFDSEFSNPG 418

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
                 +L+ +  T++ +L  L    ++  LG   LR + +    +    G  +  +   
Sbjct: 419 GRGLGAVLADNAMTILRSLFALALVAIIMLLGARPLRMVLDATLPQPALAGAGADAALLG 478

Query: 485 ISSAVTTGLMPNDNIALDSS-----------------NQDIFSHSRNLQSRINSYVSKQS 527
                +           +                     D         + +   V    
Sbjct: 479 GPEEDSAPKALTGGTQNEPPQNRLPTPAGAQTGAVLGPMDEMPRDMVQLASVEGAVHHSK 538

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
              +  + E N E   ++L  W     E
Sbjct: 539 LRAVAELAEDNAEDALRVLGDWLAEGDE 566


>gi|332305659|ref|YP_004433510.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172988|gb|AEE22242.1| flagellar M-ring protein FliF [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 568

 Score =  329 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 220/562 (39%), Gaps = 31/562 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F  S  S    R L+L   +++ + + +    +   P Y  L  K++  ++    
Sbjct: 26  EQKSGFMDSLGSTDMVRQLMLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
               +  ID+R+   G+++ V S      ++ +A QGL S   + G ++  +   FG++ 
Sbjct: 85  DYFDQNQIDYRL--EGNTVYVSSDQYQDIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++++    A E ++ART++ +S +  A+V + +P    F +   + +A+V+I A     
Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVITARRGAI 201

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHE 240
              +   +I  +VA+AV  L+   VTV DS G+LL +   +           + +  + E
Sbjct: 202 MGSEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRESE 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS    +D   S   
Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVED--NSVGG 319

Query: 301 QPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                     N P +               ++   + KEE  NYE++T    T      +
Sbjct: 320 VLGGIPGALTNQPPLDSNIPEEAIASNTQTTMPGRNHKEETRNYELDTTISHTKQQTGVI 379

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS++V ++    T   G +    +  + L +I +++    G +  RGD++ + S+ F 
Sbjct: 380 RRLSVSVALDHIATTGEDGTTTFSPRSQAELLDIRRLLQGGLGFDVTRGDSLEVVSIPFS 439

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKG 472
                    V +         F  ++  ++  +  +++    +  + R     +    K 
Sbjct: 440 REGEVALEEVPIWEDPK----FMPILKLVIGGLVIIVLLLAVVRPMLRKLIYPEETTSKD 495

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E      L     + ++ +    +  +   +    +           + +  +     + 
Sbjct: 496 EFDADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLP---------DLHKDEDVLKAVR 546

Query: 533 HMIEINEERFAKILRKWARSEI 554
            ++    E  +++++ W   + 
Sbjct: 547 ALVANEPELSSQVVKNWLLQDE 568


>gi|268678860|ref|YP_003303291.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616891|gb|ACZ11256.1| flagellar M-ring protein FliF [Sulfurospirillum deleyianum DSM
           6946]
          Length = 574

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/572 (23%), Positives = 234/572 (40%), Gaps = 26/572 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M     L Q      +L   + ++ A  I+V I   +    + N+       Y  L+ K 
Sbjct: 1   MDFKTLLNQIATLIQNLTLRQKIVSAVSIVVLIGFLVFLMLYKNTSSSSMSGYTILFEKT 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
              D   I   L +  + +++ D G +I+VP+ MV K RI +AA G+P +S   G+E+FD
Sbjct: 61  TAGDSALIIQQLEKDKVPYKVLDEG-TIAVPNDMVHKQRIAIAALGIPKNS-KVGFEIFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K   FG T F Q+I  +RALEGE+ARTI+S+  I  A VHI +P    F +     TAS+
Sbjct: 119 KTE-FGATDFEQKIKYIRALEGELARTIESLGPIANASVHIAIPKESVFAQKQVPATASI 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKS 230
           ++          K    IR+LVAA++ NL   +V++++  G+ L   E       ++   
Sbjct: 178 VLNIRQGMALSVKQIVGIRNLVAASIANLPAENVSIVNQDGEPLGDEESNLFQGELVKSQ 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           +   +  +H IE  I   LA  +G VD   + V  + +   Q     VYDP+S       
Sbjct: 238 IRYKKEFEHNIEQKIINVLAPVIGGVDKVNAKVTIDFDFSQQDYVSEVYDPNSVPRSEQS 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  +  E            N+  V   +           K    +NYEI+ K + +  
Sbjct: 298 VEEKREGKEPQDVGGVPGAISNIGPVQGLESTKKGET--YQKSSTTTNYEISKKVVNSKD 355

Query: 350 DNYKLERLSIAVVVN--KGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRG 403
           +  K++RL+ AVVV+       +  G   ++          +  I  +V    G N+ RG
Sbjct: 356 EFAKIKRLTAAVVVDGTYKYGLDADGNKKNELEYFPLSKEQMDAIRDVVRQTVGYNATRG 415

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D +T+++++F       +     SFM+ +  +   +   L +++   L+       +   
Sbjct: 416 DEVTVSNLEFKPLSSDGTRVPPKSFMEEVLSYLIKLTPLLKYILVAGLLFIFYKKVILPF 475

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                  K +     +        +V   L        ++  +              +  
Sbjct: 476 SQKMVETKLDDFEDEVEPIKLEDESVEDTL----EKFKEARKKVEDQLGIGQDFNEEALK 531

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 +L H+ +   E FA I++   R+E E
Sbjct: 532 YDVLLEKLKHIADEKSEDFASIIQSMIRNEGE 563


>gi|114705807|ref|ZP_01438710.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506]
 gi|114538653|gb|EAU41774.1| flagellar M-ring protein [Fulvimarina pelagi HTCC2506]
          Length = 551

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 199/553 (35%), Positives = 310/553 (56%), Gaps = 13/553 (2%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q  Q   + + LG  ++  L  V L+ ++L     +F++    + LY  L+  DV RI  
Sbjct: 8   QAQQIVSNLSQLGPKKLGALGIVGLLVVVLVGLGSYFLSRADMETLYSGLDRQDVTRIGA 67

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL+EA I F ++  G ++  P S  G+AR+ LA +GLP S  N+GYELFD + S GLTSF
Sbjct: 68  ALTEAGIPFDVTAEGDAVQTPFSQTGEARMLLAEKGLPRS-ENAGYELFDNIGSIGLTSF 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           MQE+TRVRALEGEIARTIQ+++ I AARVH+V+ D GSFR+   +P+ASV+IR      +
Sbjct: 127 MQEVTRVRALEGEIARTIQTLANIRAARVHVVLADEGSFRRERRKPSASVVIRTDGSEDF 186

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHEIEMN 244
            SA AIR LVAAA+P +   +VTVL+S G LL + E    +   K   I + +   +E +
Sbjct: 187 GSASAIRSLVAAAIPGMTPQEVTVLNSDGTLLASGEEGVSSAPSKLFGIEKIMSGSVEES 246

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I + LA +LGV NF+++V A LN D QQI E ++DP+S+VERS+R  K+  +S+ +    
Sbjct: 247 IRRTLAPYLGVGNFQTSVTASLNTDRQQISERIFDPESRVERSVRSMKEMDQSQNTTQNE 306

Query: 305 AVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           AV +EQ++      +       S +  +++EE +NYEIN K+I TT + Y++E+LSIAVV
Sbjct: 307 AVGIEQDIQAADEVEGAPGGESSSDEKERREELTNYEINEKTIQTTSEGYEVEKLSIAVV 366

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N+ RL   +G +A    ID+ +AEI  +V++A+G +  RGD + +T++DF++       
Sbjct: 367 INRQRLAAAIGENATDTDIDARIAEIESLVASASGYSEARGDQLKVTAVDFVDAAGSLEP 426

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                F ++  R   T+INAL  LV  +LV + GL    R     +  + E    + +  
Sbjct: 427 IPGPGFSEMFMRQSGTLINALTILVVAVLVIWFGLKPAIRALAAPEPAESEADNDNSIET 486

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                              + +   +   S   +             RL  +++I+E + 
Sbjct: 487 LQRVGEGMESGSVGSLAPANGTQGFVEDLSGAAR---------SPQARLEALVDIDENQA 537

Query: 543 AKILRKWARSEIE 555
           A +L++W + +  
Sbjct: 538 ANVLKQWLKQKEA 550


>gi|114777411|ref|ZP_01452408.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1]
 gi|114552193|gb|EAU54695.1| flagellar M-ring protein FliF [Mariprofundus ferrooxydans PV-1]
          Length = 547

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 128/543 (23%), Positives = 237/543 (43%), Gaps = 45/543 (8%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           L + R L+L     + +  F+    + +   Y  +Y  +E  D   +   L + +I +R+
Sbjct: 38  LVKYRRLMLFIAASLMLAGFIGLVLWSSEKPYRAVYAGMEEKDAATVVEMLQKEHIPYRL 97

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
              G ++ VP   V + R+ LA QG+      SGYELFDK N FGL+ F ++I   RA++
Sbjct: 98  E-GGGTVMVPEDQVYEVRMKLAGQGINPRG-TSGYELFDKSNEFGLSDFTRKINLQRAMQ 155

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHL 194
           GE+ARTI+ +  + AARVH+V+P   +F     + TASVM++          +  AI++L
Sbjct: 156 GELARTIEVMPQVSAARVHLVLPKESAFADRDRKATASVMLQLSGSQRLSKNTVLAIQNL 215

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHEIEMNINKALAAF 252
           VA++V  +++ DVTV+D++G LL+++E E               ++  +E  +   L   
Sbjct: 216 VASSVAEMNVADVTVVDASGTLLSSSEKETPSSEGQTLQEYQSKLEQRLEQRLTGMLEQI 275

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           +G       V A+++ +    +   Y+PD +V RS +   ++  S +S       +  N 
Sbjct: 276 VGEGQSVVRVSADIDREFIDQQSTRYNPDEQVLRSRKSIVESHTSSSSGAMGVPGLASNT 335

Query: 313 PHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           P  +        +  +       + E+ +NYEI++ S         +++LS+A +V    
Sbjct: 336 PGSNPATSNKTAAAPSQPGNTAKRNEDVNNYEISSTSEHRVVPFGNIKKLSVAAIVGGHM 395

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
            T+  G      +  + LAEI K+V +A G +  RGD++T+ SM  ++            
Sbjct: 396 QTDAKGVQTFVPRSRAELAEIQKLVESAMGYDEDRGDSVTVQSMPLMDISSSADTAALDK 455

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
               +   +       +  +  +L+ +  L  L +            G  + ++P  +S 
Sbjct: 456 AEARV--FYMKAARYGIAALALMLLGWFVLRPLAKRIQDSTPHDQTAGKPAPVTPLHLSD 513

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
                                           ++Y    +  ++   IE+  ER  K+LR
Sbjct: 514 --------------------------------STYKRLANMEQVRSSIELQPERATKVLR 541

Query: 548 KWA 550
           +W 
Sbjct: 542 EWV 544


>gi|161485650|ref|NP_419721.2| flagellar MS-ring protein [Caulobacter crescentus CB15]
 gi|221233887|ref|YP_002516323.1| flagellar MS-ring protein [Caulobacter crescentus NA1000]
 gi|220963059|gb|ACL94415.1| flagellar M-ring protein FliF [Caulobacter crescentus NA1000]
          Length = 554

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 130/555 (23%), Positives = 237/555 (42%), Gaps = 12/555 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +  F  S    G  R+  +  V    + + +A   F+     + LY  L++ + + ++ A
Sbjct: 1   MESFLGSIRQFGVGRLAAMLGVGAGVVAVLVALVMFMGKEPSELLYSNLDLKEASEVTQA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A I +    +GS+I VP   V  AR+ +A +GL SS S  GYE+FD  N+ G T F+
Sbjct: 61  LDQAGIKYETKGDGSTIMVPRDKVASARLMVAGKGLVSSGS-IGYEIFDTNNALGQTDFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS-VY 185
           Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P    F +   +P+A+V I   +     
Sbjct: 120 QQLNRQRALQGELERTIKAMQGVNSVRVHLVLPKRQLFEEDAEQPSAAVTIGVGSREPSS 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
               AI++LV+++VPN+    V V+D  GK L+A   E      +      ++  I   +
Sbjct: 180 DMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSAPSDESLAGKMAQDRKSEVEARIAKTV 239

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              +   LG    R  V AEL+++    +E  +DPD +V RS   ++ + +   +   + 
Sbjct: 240 KDMIEGVLGPGKARVNVTAELDLNRVTTQEERFDPDGQVIRSESTTEASSQENKNDDNAG 299

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           VT   N+P               T + +  +NYEI+     T  +   ++++++AV ++ 
Sbjct: 300 VTAAANVPGGQGANGFQQLGSR-TGQNDAVTNYEISKSVTTTVQEPGTIKKIAVAVAIDG 358

Query: 366 GRL-TEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
                   G+  A   +    + +I ++V  A G ++ RGD + +T++ F + +      
Sbjct: 359 VSAPMAADGKPGAYTPRTAQEIQQIEELVKTAVGFDAERGDQVRVTNIKFPQPEDQGLE- 417

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
            Q                  V  V  LL+    +    +  +     +  + G S   P 
Sbjct: 418 EQGLLAGFDKNDIMRAAELGVLAVVALLILLFAVRPFIKNLSAPAPGQIALAGPSGGPPV 477

Query: 484 PISSAVTTGLMPN------DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                +  G                +         R   ++I   V   S  R+   +E 
Sbjct: 478 TRLVTLADGTQQQVVVDQSGEPIALAGPPVSDIDQRIDIAKIEGQVKASSIKRVSEFVEK 537

Query: 538 NEERFAKILRKWARS 552
           + +    ILR W   
Sbjct: 538 HPDESVAILRNWLHE 552


>gi|109899352|ref|YP_662607.1| flagellar MS-ring protein [Pseudoalteromonas atlantica T6c]
 gi|109701633|gb|ABG41553.1| flagellar M-ring protein FliF [Pseudoalteromonas atlantica T6c]
          Length = 568

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 92/562 (16%), Positives = 215/562 (38%), Gaps = 31/562 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F  S  S    R L L   +++ + + +    +   P Y  L  K++  ++    
Sbjct: 26  EQKSGFMDSLGSTDMVRQLTLVVALVICVAIAVFIMIWAQEPDYRPL-AKMQTQELIEAL 84

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
               +  +D+R+   G+++ V +      ++ +A QGL S   + G ++  +   FG++ 
Sbjct: 85  DYFDQNQVDYRL--EGNTVYVSADQYQNIKLGMARQGL-SQGVSEGTDIIMQDMGFGVSQ 141

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINP 182
            ++++    A E ++ART++ +S +  A+V + +P    F +   + +A+V++       
Sbjct: 142 RVEKVRLKHAREQQLARTLEEMSAVTRAKVLLALPKENVFARREKKASATVVVTSRRGAI 201

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK--SLSIVQAIQHE 240
              +   +I  +VA+AV  L+   VTV DS G+LL +   +           + +  + E
Sbjct: 202 MGNEEVSSIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDSEAARSKKEFEMERKRETE 261

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS    ++   S   
Sbjct: 262 YLQKIDSILIPVLGLGNYTAQADVTMDFTAVEQTKRSYNPDLPAVRSEMTVEE--NSVGG 319

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDK------KEEQSNYEINTKSIATTHDNYKL 354
                     N P +         +            KEE  NYE++T    T      +
Sbjct: 320 MLGGIPGALTNQPPLDSNIPEEASASNTQTTVPGRNHKEETRNYELDTTISHTKQQTGVI 379

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS++V ++        G S    +  + L +I +++    G +  RGD++ + S+ F 
Sbjct: 380 RRLSVSVALDHVSTVGEDGTSTLVPRSQAELLDIRRLLQGGIGFDVTRGDSLEVVSIPFS 439

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKG 472
                    + +         F  ++  ++  +  +++    +  + R     +    K 
Sbjct: 440 REGEVALEELPIWEDPK----FMPILKLVIGGLVIIVLLLAVVRPMLRKLIYPEETTSKD 495

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E      L     + ++ +    +  +   +    +           + +  +     + 
Sbjct: 496 EFDADEGLDLGDETISMLSQEFDDSQVGFAADGSFMLP---------DLHKDEDVLKAVR 546

Query: 533 HMIEINEERFAKILRKWARSEI 554
            ++    E  +++++ W   + 
Sbjct: 547 ALVANEPELSSQVVKNWLLQDE 568


>gi|157165014|ref|YP_001466462.1| flagellar MS-ring protein [Campylobacter concisus 13826]
 gi|112801613|gb|EAT98957.1| flagellar M-ring protein FliF [Campylobacter concisus 13826]
          Length = 565

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 119/570 (20%), Positives = 228/570 (40%), Gaps = 27/570 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56
           M     L Q  +    L   + ++  S I++ +   +    + +       Y  L+  + 
Sbjct: 1   MDFKALLHQISQIYQKLSLKQKIVAGSSIVLVVAFLVFLTLYKSKSDSFVGYSVLFENIS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            SD   I   L++  I +++++ G +I VP+S V K RI +A  G+P  S   G+E+FDK
Sbjct: 61  PSDSALIVDQLNKDGIKYKLANEG-TILVPTSDVYKERIAVATLGIPKES-KIGFEIFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG T   Q +   RALEGE+ARTI+S+S I  A V I +P    F +  A PTAS++
Sbjct: 119 -QEFGATDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQALPTASIV 177

Query: 177 IRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS 232
           +               I++LVAA+V NL   +V +++  G  L   +   + + + + + 
Sbjct: 178 VELKPGVSLNAKQIFGIKNLVAASVTNLSTENVKIVNQDGVALGDEDGEFDSDAIAQQIR 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             +  ++  E  I   LA  + G D   + V  + + D +  +  VYDP++ V     + 
Sbjct: 238 YKREFENNYEQKIVNVLAPIVGGADKVVAKVNIDFDFDKKDTKSEVYDPNNVVRSESNIE 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  Q S  ++         N+  V           E  +K  +Q+NYEI+ K        
Sbjct: 298 EKRQGSAPNEVGGVPGAVSNIGPVQGLDDS--TLKEQYNKSSQQTNYEISKKVTNVKGQF 355

Query: 352 YKLERLSIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
             + R+S AVV++    ++        G              I  ++  + G N  RGD 
Sbjct: 356 ASINRVSAAVVIDGLYQSKKDKDGKPTGELEFAPLTKEQRESITNLIKQSIGYNQNRGDE 415

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           +++ + +F   +  ++G     FM   + +    +  L ++   LL+       +     
Sbjct: 416 VSLDNFEFKTGKDVSTGEKMDGFM---NNYVMPFLPLLKYIFAALLLYIFYKKVIVPFMQ 472

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               +  E   ++      I        +     A     + +       +  +      
Sbjct: 473 KMLEETKEEEEQAQDDLEEI-EMDAEDTLEKFKAARKKVEEQLGLSGEFNEDEL---KYD 528

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIE 555
               ++  ++    E  + +L+   +++ E
Sbjct: 529 VLLEKMKIVVTERSEEISNLLQDMVKNDSE 558


>gi|295690740|ref|YP_003594433.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756]
 gi|295432643|gb|ADG11815.1| cyclic nucleotide-binding protein [Caulobacter segnis ATCC 21756]
          Length = 532

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 126/519 (24%), Positives = 221/519 (42%), Gaps = 10/519 (1%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             F+     + LY  L++ + + ++ ALS+A I F    +GS+I VP   V  AR+ +A 
Sbjct: 16  IMFMGKEPNELLYSNLDLKEASEVTQALSQAGIKFETKGDGSTIMVPRDKVASARLMVAG 75

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +GL SS S  GYE+FD  N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P
Sbjct: 76  KGLVSSGS-IGYEIFDGGNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLP 134

Query: 160 DMGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
               F +   +P+A+V I   +         AI++LV++AVPN+    V V+D  GK L+
Sbjct: 135 KRQLFEEDSEQPSAAVTIGVGSREPSTDMVHAIQNLVSSAVPNMKAEKVAVIDQHGKTLS 194

Query: 219 ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
           A   E     ++       +  I   +   +   LG    R  V AEL+++    +E  +
Sbjct: 195 APSDESLAGKEAQDRKVEAEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEERF 254

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
           DPD +V RS   ++   +   ++  S  T   N+P           S    +  E  +NY
Sbjct: 255 DPDGQVVRSESTNESNSQENKNEDNSGATATANVPGQGAGGFQQLGSRAGAN--ESVTNY 312

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG--RSADQGKIDSYLAEINKIVSAAT 396
           EI+     T  +   ++++++AV ++             A   +    + +I ++V  A 
Sbjct: 313 EISKSVKTTVQEPGTIKKVAVAVAIDGVTAPPGKDGKPGAYTPRSAQEIQQIEELVKTAV 372

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G ++ RGD + +T++ F           Q                  V  +  +L+    
Sbjct: 373 GFDAARGDQVKVTNIKF-PQAEDQGLEKQGLLSGFDKNDIMRAAELGVLGIVAILILLFA 431

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM---PNDNIALDSSNQDIFSHSR 513
           +    +  +  +       G        I+ +  T            L  +        R
Sbjct: 432 VRPFIKNLSEPNVVAALPSGSGQPVTRMITLSDGTQQQVVVDESGEPLAIAGPVSDIDQR 491

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
              ++I   V   S  R+   +E + E    ILR W   
Sbjct: 492 IDIAKIEGQVKASSIKRVSEFVEKHPEESVAILRNWLHE 530


>gi|95929849|ref|ZP_01312590.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684]
 gi|95134145|gb|EAT15803.1| flagellar M-ring protein FliF [Desulfuromonas acetoxidans DSM 684]
          Length = 521

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 128/553 (23%), Positives = 229/553 (41%), Gaps = 46/553 (8%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
             F +      +R + L +V L  + LF           Y  L+  L  +D + I   L 
Sbjct: 8   NMFATIKGWPLSRKISLIAVTLFSLTLFALIIMQARHTDYQLLFANLSENDASSIVTWLK 67

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           E  + + +   G S+ VP+  V + R+ LA  GLP      G+E+FDK  S G+T F+Q+
Sbjct: 68  EQKVPYELRSGGQSVYVPADRVYETRLDLAGAGLPQGGG-VGFEIFDK-QSLGITDFVQK 125

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-- 186
           +  +RA++GE++RT+ S+S + AARVH+ +P    F+    R TAS++++       K  
Sbjct: 126 VNYLRAMQGELSRTVASLSPVSAARVHLALPQKRLFKSEQQRVTASIIVKLAPGRTLKEA 185

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEM 243
             + I +LVA +V  LD   VTV+D+ GK+L+    E     +    L   +A++ ++E 
Sbjct: 186 QVQGIVNLVAGSVEGLDSDYVTVVDAAGKVLSKKPDEGLSGPMTPGMLEYQRAVERQMES 245

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
                L   LG+ N    V A L+    +  E +YDP S V RS +L +  + S T    
Sbjct: 246 RAQAMLDRALGMANSLVKVTAVLDFAQVEKLEELYDPKSAVPRSEQLQEQKEGSSTVG-G 304

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
               V+ N+    +       +  ++    E +NYEI+     T      ++ LS++V+V
Sbjct: 305 GVPGVQANLGPGVNSAGGGGSNSTSSA---ETTNYEISKVVNRTVAPVGTIKHLSVSVLV 361

Query: 364 NKGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
                         A   + +  L  I K+V +A GI+  RGD + + SM F +      
Sbjct: 362 ADKMTDGEEDGAEPALTPRSEQELRTIEKMVQSALGIDKTRGDQLNVVSMPFADEFYEQP 421

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              + S  D L   +  ++  ++  +G L++  + +    +    +   +     K +  
Sbjct: 422 QLPEPSVTDQL-YVYMPLLKYVLAGLGALVMYLMLVRPALKTLKSEATVQHFKTVKELEE 480

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                 + T  L   + +  +    +                                  
Sbjct: 481 EMAAGRSATVELDATEQMRQNILKAEHSP------------------------------- 509

Query: 542 FAKILRKWARSEI 554
            ++++R W   E 
Sbjct: 510 -SQVIRTWMTDEE 521


>gi|90415352|ref|ZP_01223286.1| flagellar protein [marine gamma proteobacterium HTCC2207]
 gi|90332675|gb|EAS47845.1| flagellar protein [marine gamma proteobacterium HTCC2207]
          Length = 599

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 121/559 (21%), Positives = 208/559 (37%), Gaps = 26/559 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                     R  + A +  + + +F+ A  ++  P Y  +Y  L  SD      AL+ A
Sbjct: 47  LSQIMQQPAVRKAMPAIIAFLSVAVFLIAYSWMQDPVYRTVYPGLSESDRQAAFEALAGA 106

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           +   RI  +   + VP S   +ARI LAA+GLP   +  G        S   + FM+++ 
Sbjct: 107 DFKARIDSSTGELKVPDSRYHEARIFLAARGLPQEGTTGGISGLSDEASMTSSQFMEQVR 166

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS--VYKSA 188
            V A+E E+AR+I  I+ I +ARVH+  P    F +      ASV++             
Sbjct: 167 YVSAMEQELARSITQINTIRSARVHLASPKQSVFVRNRTPAKASVVVSPYPGRLVSRSQV 226

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIEMNIN 246
           EAI H+V+++VP L   DV V+D  GKLLT         +    +   Q ++      I+
Sbjct: 227 EAITHMVSSSVPYLAAEDVVVVDQRGKLLTDANNFASMQLNSAQMEHKQRLEETYRNRID 286

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +G+ N R+ V  +++   ++     YD ++   ++        +   S  E   
Sbjct: 287 ALLMPVVGMGNVRAEVDIQVDYTEEESTYEEYDGNNNGPKARSEVLSLDQDAVSSAEGIP 346

Query: 307 TVEQNMPHVSDR-------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               N   ++                   T       NYE++            +ER+S+
Sbjct: 347 GATTNTVPLNATAILNGQLDGSAEDGGLRTSSSTTTRNYEMDRTVRHVKRQGGSVERISV 406

Query: 360 AVVVNKGRLTEV--LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           AVV+N+    E         +G  +  L   + +V    G +  RGD +TI S  F    
Sbjct: 407 AVVINEPVAQEGGVNEAGESKGFSELELERFSDLVKGVVGFDGERGDVVTIVSATFETPV 466

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
            F S        DI       VI+ +  L   ++  F+ L  +R +         E    
Sbjct: 467 PFKS--------DIAWYENGQVISGIKTLGAAIMFLFILLSVVRPVIKAYLPAVDENLID 518

Query: 478 SIL----SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL-L 532
                          +    M +     D   +     S      +++  +    + L  
Sbjct: 519 ETQVSSKDGELNDEEMRLIEMRDGESLEDIKAKLKPKKSTISAEMLDTANTYDDKVALVR 578

Query: 533 HMIEINEERFAKILRKWAR 551
            ++  +  R A +L+K  R
Sbjct: 579 LLVAEDSGRVANVLKKMIR 597


>gi|157959913|ref|YP_001499947.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345]
 gi|157844913|gb|ABV85412.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345]
          Length = 566

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 112/569 (19%), Positives = 214/569 (37%), Gaps = 34/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           + + L    +      R  R +++ +V+ +     +    +  S  Y  LY   E  + +
Sbjct: 17  VNNPLNSLKEKWQQYNRGDRQVVILAVLAIVAACVIVLMLWSASQGYRPLYGNQEGVETS 76

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I   L    I +RI  N   I V    +G AR+ LAA+G+  +   SG E  +  N  G
Sbjct: 77  QIIEVLEAEGISYRIDANSGLILVTEDKLGPARMLLAARGV-KAKVPSGMESLENSN-IG 134

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM++     +LEGE++RTI ++  +  ARVH+ +P    F +       + +   + 
Sbjct: 135 TSQFMEQAKYRYSLEGELSRTIMALKAVKTARVHLAIPKKTLFIRQQPELPTASVMLELY 194

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIV 234
           A +    +  E+I +LVA +V  +    V V+D  G  L++    N+       + L   
Sbjct: 195 AGSNIQPEQIESIVNLVAGSVTGMTPDRVQVVDQEGNHLSSSISVNKDITQARDRQLKYT 254

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           Q ++  +    +  L   LG D+F   V A +N +  +  +   DP   +    + +  +
Sbjct: 255 QELEQSLIDRASSMLLPILGRDHFEVQVAANVNFNQVEETKESLDP---LAVVTKENLTS 311

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             + +           N P  ++      R   N+   +E   ++       T +   +L
Sbjct: 312 NETNSDMALGIPGALSNQPPAAEADESNARRNLNS---QESRQFDTGRSVRHTRYQQMQL 368

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E LS++V++NK    E        G   + L +++ +V  A G ++ RGD  +I S DF 
Sbjct: 369 ENLSVSVLINKQSAGET-------GWTQTQLDQLSSMVQDAIGFSAARGDQFSINSFDFA 421

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             Q+     +     +     + T +   +  +  L + F  L  L +          + 
Sbjct: 422 PTQIAEFEPMPWWQGES----YQTYLRYFIGALLGLAMIFFVLRPLVKHLTKTVEHNLKS 477

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-------RINSYVSKQS 527
             +      P + A  T L   +N    +      +      +          S      
Sbjct: 478 IDEPAQPSLPPAQATVTKLEGGNNAQAIADQLIGQNQKTGDLNWSGDASLPEPSSPLAVK 537

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIED 556
              L  +      R A+++  W      D
Sbjct: 538 MEHLSLLANQEPARVAEVIAHWIGDTEHD 566


>gi|68164520|gb|AAY87249.1| predicted flagellar basal-body M-ring protein [uncultured bacterium
           BAC17H8]
          Length = 573

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 103/555 (18%), Positives = 210/555 (37%), Gaps = 25/555 (4%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             T     R ++ A   +   ++ +        P    LY  L  ++  R+  AL  A +
Sbjct: 30  RLTGGQSLRQVLPAVAGITVAVIGLVFFVVSQQPERTTLYASLPEAEKARVVDALKNAGV 89

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
           D  +  +   + VP      +R+ LAAQGLP +S   GY+    +   G +  ++ +   
Sbjct: 90  DVVLDPSTGDVIVPVKDYHSSRMTLAAQGLP-ASIPDGYDSLSDIP-MGSSRSVENVRLK 147

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEA 190
           ++ E E+AR+I  I G+V ARVH+ +P+   F +    PTASV ++         +  +A
Sbjct: 148 QSQEIELARSISEIDGLVTARVHLAIPEKSVFARSATPPTASVFVQMENGRSLSRQQVDA 207

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           I HLV+++VP +   DVTV+D  G LL+    +    +    L     ++      +   
Sbjct: 208 IVHLVSSSVPFMAKNDVTVVDQYGNLLSRPPQDSAGMMSDAQLEHRIRLEEIYRNRVIAL 267

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           ++  +G  N  + V  +++    ++ E V DP+    RS + S ++        +     
Sbjct: 268 VSPIVGAGNVTAQVNLDIDFTRSEVTEEVMDPEGTALRSEQSSSESS--AEIIAKGVPGA 325

Query: 309 EQNMPHVSDRKVPLPR------SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
             N                   +      +    NYE++     T   + ++  +  AV+
Sbjct: 326 TSNRAPTQTDIDTQQNVDSSDPNANRARSQSSTRNYEVSRTVSTTQRPSSQITGIQAAVL 385

Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V +  +     G        +  L EI  +V+ A GI+  RGD +T++S  F+       
Sbjct: 386 VREMEVMNAETGLMEVSEIPEEKLKEIEALVANAIGIDDGRGDRLTVSSSTFVSA----- 440

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
               +  +          I  +   +  L++  + L  +R L N         G    + 
Sbjct: 441 ----LEGIKKPWYDMDWAIMIMRQGLTILIMAVVVLGVIRPLINRVMVPTAAGGPGEAIV 496

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEE 540
                  + T  +       D   +     +      +++  +    +  +  ++     
Sbjct: 497 TADDDVDLDTVEIQEGESLEDIKAKLKPKKAAISAEMLDTANTYDDKVAVIRMIVSDEAG 556

Query: 541 RFAKILRKWARSEIE 555
           R + + +   + +++
Sbjct: 557 RVSNVFKSMMQQDMD 571


>gi|308050036|ref|YP_003913602.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
 gi|307632226|gb|ADN76528.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
          Length = 540

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/562 (19%), Positives = 214/562 (38%), Gaps = 46/562 (8%)

Query: 3   ILDQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + +L   +       R+ R +++ +V+   +   +    +  S  Y  LY   E  D  
Sbjct: 17  FMARLRGLWARWQGASRSDRQVLVIAVMATVVATVIVLVLWTASRGYRPLYGSQEGFDSA 76

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+  +   I V    +G+AR+ LAA+G+  +   +G EL DK  + G
Sbjct: 77  EIIEVLEAEKIPYRMQADSGQILVLEDQLGRARMTLAARGI-RAKMPAGMELLDKAGALG 135

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA- 179
            + F++E      LEGE++RTI ++  + +ARVH+ +P    F +     P+A+VM+   
Sbjct: 136 SSQFLEEARYRLGLEGELSRTIMAMKAVRSARVHLAIPKRTLFIRQQPEKPSAAVMLELY 195

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIV 234
                     EAI +LV  AV  + +  V+V+D  G+LL+A+    +       + L+  
Sbjct: 196 SGATLSRDQVEAIVNLVVGAVTAMPVDAVSVVDQNGRLLSADLELAQELARSGERQLTYN 255

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           Q ++  +    +  L   LG  N+R  V A +N D  +      DP++ V    R +  +
Sbjct: 256 QQMEQALNQRASDMLQPILGYGNYRVQVAARVNFDQIEETREQVDPENTVV--TREASRS 313

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                +          N P  ++         +N   + E   +E +     T     +L
Sbjct: 314 DTRGGNLAIGIPGALSNQPPATNADEEEAAPAQNLSSESE-RYFETSRAVRHTKFQQAQL 372

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           ERLS++V++N                  + L ++ ++V  A G  + RGD++++ +  F 
Sbjct: 373 ERLSVSVLLNSEA----------GQWSQAQLDQLGQLVQDAIGFEAARGDSLSLHAFPFA 422

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              +     +        ++ +   +  L+  +  L +    L  L +       ++   
Sbjct: 423 AQPVPEMEPLPWW----QTQEYQLYLRYLIGALLGLGLILFVLRPLVKHLTRTVEQEKAQ 478

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
              +  +  P    V   + P                                   L  +
Sbjct: 479 AEAAQAALLPKHEPVVEPVTPEL--------------------PPPGSALSVQLEHLSLL 518

Query: 535 IEINEERFAKILRKWARSEIED 556
                 R A+++ +W  +   D
Sbjct: 519 ANEEPARVAEVITQWMSNNERD 540


>gi|256830792|ref|YP_003159520.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028]
 gi|256579968|gb|ACU91104.1| flagellar M-ring protein FliF [Desulfomicrobium baculatum DSM 4028]
          Length = 537

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/555 (24%), Positives = 252/555 (45%), Gaps = 32/555 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +     T     + ++L  +++  ++ F    F++N   Y  LY +L   D   
Sbjct: 5   LQNTLAKATDFWTDKSLAQRILLGGLLVSLLIAFFVMIFWMNKVDYRVLYSQLYQDDAAS 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L +  I ++I+D+G++I VP  MV +ARI LA +G        G+ELFD+ +  G 
Sbjct: 65  VVSYLQKEKIPYQITDSGATIMVPGDMVYEARIKLAGEG-SLHGQGIGFELFDENS-IGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T+F+Q I   RAL+GE++RTI  +S + +ARVH+V+P+   F +  A P+A++M++    
Sbjct: 123 TNFVQGINYQRALQGELSRTISELSEVESARVHLVLPNKSLFVEEQAPPSAAIMLKLKGG 182

Query: 183 SVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237
                +  +AI +LV+ +V  +    +T+ DS GK+L   + + +   +    L    ++
Sbjct: 183 RSLGAQQVQAIVNLVSTSVEGMSAEHITLADSRGKILYEPKTDTDIAGLSSTQLEYQTSM 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           Q  +E  I + L   +G     + V A+L+ D   IR+ ++DP S V RS   +++  + 
Sbjct: 243 QRSLEQRIEQLLLPIVGPGRVIARVNADLDFDRTTIRKEIFDPKSAVVRSEVKNEEESKG 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +        + N    +DR      + + + +    +N++IN +          ++RL
Sbjct: 303 SANVDGGTP--DPNYQGENDRTASG--TAQESVRTSSTTNFDINKEEQQIIAQVGSIKRL 358

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AV+V+   + +  G  A +      + +I ++   A G +  RGD I ++S+ F E  
Sbjct: 359 SVAVLVDGKYIQQQDGTYAFEPLNAEQMEQIRQLSQRAVGFDDARGDAIEVSSISFGEP- 417

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
               G  Q   +D+ SR+F  +   L+  +  LL        +          K  V   
Sbjct: 418 ---VGAEQAPLLDVASRYFQLLGKPLLNTLIILLFLLFVARPVVLALIRPKVDKPTVQTA 474

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             L       A+T GL   D  A+D+  +                  + +      ++E 
Sbjct: 475 DQLGAAQELMALTEGLNEEDMAAVDAVKRI-----------------ENAKHLAQQLVEQ 517

Query: 538 NEERFAKILRKWARS 552
           N ++   I+R+W   
Sbjct: 518 NMDQAVMIMRQWMTQ 532


>gi|32490809|ref|NP_871063.1| hypothetical protein WGLp060 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166015|dbj|BAC24206.1| fliF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 569

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 121/561 (21%), Positives = 224/561 (39%), Gaps = 54/561 (9%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
             +L S  ++ I L +    ++ S +Y  LY  +   D   I   LS  NI ++ S N  
Sbjct: 30  KYLLLSFGVIGIALSIVLITWLQSSNYQVLYTNISDQDSGDIISELSTLNIPYKFSKNNG 89

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           SI VP   + + R  LA + LP   S  G+E+ D  +SFG++ F + I   RALEGEIAR
Sbjct: 90  SIMVPEDKIYETRFLLAQKNLPKGGS-IGFEILDN-SSFGISQFNENINYQRALEGEIAR 147

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAV 199
           TI++I+ I +ARVHI +P    F +     +AS+ +             +AIR LV+  V
Sbjct: 148 TIETINSIKSARVHIAIPKSSVFIRDNKPSSASITLGLHAGRTLDKNEIQAIRWLVSGTV 207

Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           PNL + ++ ++D+ GKLL   +   +      L  ++ I+ E    I + L   +G +N 
Sbjct: 208 PNLPVSNIVLVDNYGKLLAYPDNNNDDKNITQLQYIKDIELEYRRRIEEILIPIVGFNNV 267

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD--AQRSETSQPESAVTVEQNMPHVS 316
           ++ V A+++    +     + P++        S+      + +   E       N P   
Sbjct: 268 KAEVTAQIDFTKTEQTSEKHKPNTNPNEMSIRSQQITENNNFSQVAEGVPGALSNQPSQV 327

Query: 317 DRKVPLPRS------------------------LENTDKKEEQSNYEINTKSIATTHDNY 352
                   +                          N  +KE+  NYEI+     +     
Sbjct: 328 SSANIDEENEEIDKDAESEKEIDKKNNSSSKVEKPNNVQKEKIINYEIDRTLTHSKFSTG 387

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            L+RLS+AVV+NK        +       +  + EI  ++    G +  R DT+ + + +
Sbjct: 388 ILKRLSVAVVINKK----EDQKGNQINFEEKEMQEITSLIKEVMGYSEERNDTLDVVNAN 443

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F+  +                R     I+ + +++   L+       ++           
Sbjct: 444 FVNKKDEIFNIP----FWENIRIQNIFISLIKYILSFALMWLFINKFIKIWKTS------ 493

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                       + + +        N ++ +   +  +   N +  I+ Y ++ S  +L 
Sbjct: 494 --------EQNQLKNKIDKKSFQEKNNSIVNEKNNEINKKINEEENISIY-TENSIKKLQ 544

Query: 533 HMIEINEERFAKILRKWARSE 553
            + +   +  AKI+ +W + E
Sbjct: 545 EIADKQPKLVAKIISQWIKKE 565


>gi|260779317|ref|ZP_05888209.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605481|gb|EEX31776.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
          Length = 556

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 106/567 (18%), Positives = 213/567 (37%), Gaps = 31/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
               +L Q + +       R L+L++V+   +   +    + ++  Y  LY + E  D  
Sbjct: 3   DFTHKLKQLWSN-----SQRNLVLSAVLAAIVAAIIVVALWSSTQSYRPLYSQQERFDTG 57

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I++R+ +    + VP   V + R+ LAA+G+  +   +G +   + +S G
Sbjct: 58  EIVSVLESEGINYRLQEQNGQVLVPEGEVARIRMLLAAKGV-KAKLPTGLDSLKEDSSLG 116

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  +   ++ +   ++
Sbjct: 117 TSQFMETARYRHGLEGELIRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELK 176

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +L+  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 177 PGEDLKPEQVEAIINLIVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 236

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I    +  L   +G  NFR  V A+L+    +  + + D              + 
Sbjct: 237 NVEKQIIQRASDMLTPIVGPSNFRVQVAADLDFSQVEETQEILD---NTPIVRNEHTISN 293

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 294 NSIDQIALGVPGTLSNQPPVTGEVPTQD-SQNTNARSEVNRQYAVGSSVRRTHYQQGQIE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N+                    A+I+ +V+ A GI + RGD++++ S  F  
Sbjct: 353 KLSVSVLLNEAAAPNG------TAWTADEKAQISTMVTDAVGIAADRGDSLSLMSFSFTP 406

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +    T+       + +     +  ++  +  + + F  L  L       D +  E+ 
Sbjct: 407 LAIEAPPTIPWWQDPTIQQ----PMRYVIGGMLGMAMIFFVLRPLIMHLTGADMRSQELE 462

Query: 476 GKSILSPP-----PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                  P                 N  ++             N          +     
Sbjct: 463 FAEPQEEPIFDNLQTREEREREEALNRKLSEKGIAASSGLDVGNDMLPPAGSPLEIQLKH 522

Query: 531 LLHMIEINEERFAKILRKWARSEIEDR 557
           L  +     ER A++L++W       R
Sbjct: 523 LQLIANEEPERVAEVLKQWVNVNEHSR 549


>gi|322379554|ref|ZP_08053893.1| flagellar MS-ring protein [Helicobacter suis HS1]
 gi|322379773|ref|ZP_08054077.1| flagellar MS-ring protein [Helicobacter suis HS5]
 gi|321147801|gb|EFX42397.1| flagellar MS-ring protein [Helicobacter suis HS5]
 gi|321148014|gb|EFX42575.1| flagellar MS-ring protein [Helicobacter suis HS1]
          Length = 567

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 116/576 (20%), Positives = 220/576 (38%), Gaps = 25/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-----PHYDNLYVKL 55
           M     L Q     + L R + + + + + + +   +    +          Y  L+  +
Sbjct: 1   MDFKSLLQQVISFFSKLNRAQKITIVTAVTLIVAFLVFLLIYPTHDKGDLSGYGVLFEGM 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           + SD   I   L + +I ++I     +I +P   + + RI LA+QG+P +S   GYE+FD
Sbjct: 61  DNSDNALILQHLQQKHIPYKIPKE-DTILIPRDRIYEERISLASQGIPKTS-KVGYEIFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
             + FG T F Q I  +RA+EGE++RTI+S++ I  A VHI +P    F      PTASV
Sbjct: 119 IKD-FGATDFDQNIKYIRAIEGELSRTIESLNPIEKANVHIAIPKDSVFVSHEIPPTASV 177

Query: 176 MIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILGKS 230
           M++         +    I++L+AA+VP L + +V +++  G+ L  N+     R +    
Sbjct: 178 MLKIKPNMRLLPRQIIGIKNLIAASVPKLTVENVKLVNENGEPLGENDQLDTTRELAQAQ 237

Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           L   Q  ++ +E  I   LA  + G D   + V AE +   ++  +  +DP++ V     
Sbjct: 238 LRYKQNFENMLESKIANILAPIVGGRDKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQT 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  +     Q      V  N+  V        +  E  +K    +NYE+         
Sbjct: 298 MEEKKEGLPKKQVGGVPGVVSNIGPVQGI--ANDQLKEKYEKSTNTTNYEVGKMVSEIKG 355

Query: 350 DNYKLERLSIAVVVNKGRL---TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
           +   L RL+ AVVV+                     + + +IN +V  A G N  RGD +
Sbjct: 356 EFGVLTRLNAAVVVDGKYQKVNKNGTESMEYVALSAAEMDQINALVKQAIGYNQNRGDAV 415

Query: 407 TITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           T+++ +F                +    +      +   +++  L++       +     
Sbjct: 416 TVSNFEFNAKSTKYVPMSAYERVVATTEKVLGPFSSLFKYIIVGLVLYVFYKKIITPFSQ 475

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                + +   +                   +          + +               
Sbjct: 476 RMLEIQPDEEEQVQSLFATEEEDDEEVDKFGEMRKKVEDQLGLSASFDE-----EDVKYD 530

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561
               R+ H ++   E  A + +   + E+    T+ 
Sbjct: 531 IMLERVRHSLKEKPEEIASMFKLLIKDEVAITNTKE 566


>gi|220904839|ref|YP_002480151.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869138|gb|ACL49473.1| flagellar M-ring protein FliF [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 547

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 122/560 (21%), Positives = 242/560 (43%), Gaps = 23/560 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I   +  F      +   + +  A   +  +   +    ++  P Y  LY  L   D + 
Sbjct: 5   IQQFINSFKAVWAKMSHLQRMAAAGGAVALLAGIIGLSIWMGRPEYRVLYSNLGPEDASV 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL    + +RI+DNG++I VP  +V   RI +A +G        G+E+FDKV   G 
Sbjct: 65  VVKALQSDKVAYRITDNGATIMVPQEVVYDQRIKIAGEGG-LVGQGIGFEIFDKV-KVGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q+I   RAL+GE+ARTI     + +ARVH+V+P    F +    P+ASV+++ I P
Sbjct: 123 TDFVQKINYTRALQGELARTISEFPSVESARVHLVIPRRSLFVEERQSPSASVVLKLIRP 182

Query: 183 ---SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAI 237
                 K   AI +++  +V  LD G V++ D++GK+L   E +         +   Q +
Sbjct: 183 NIKVDQKEINAILNMMLMSVEGLDRGHVSITDTSGKVLYQPEEDSLAGITTTQMEYRQTV 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           Q  +E  I + L    G     + V A+++   + IR  ++DP+    RS   S+++Q+ 
Sbjct: 243 QRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRRELFDPERTAVRSEYRSEESQQG 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +    +  V     +     +    S ++  ++   +NYEIN +      +  +L RL
Sbjct: 303 RANLEAGSPDV-----NFRGDGITGSVSDQSGTREARTTNYEINKEEQQIVSNVGELRRL 357

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AV+++   + +  G      +    L ++ ++V  A G+++ RGD + ++S  F +++
Sbjct: 358 TVAVLIDGTYV-KADGAWTFMPRKSEELEQVRQLVHNAVGLDTGRGDALEVSSAPFTDSE 416

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                    +F D+L+ +   +   L+  +   L   L +  +         + GE+   
Sbjct: 417 PPRDP----NFADMLADYAERLGKPLLNALLAFLFLMLIVRPVVLALIRPKVEAGEMVEG 472

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
               P           +       D   Q       + +  +     +     +  + + 
Sbjct: 473 LEGLPAAEEQLALYEALEEAARTEDEVPQ------EDDEDDLVFKDIEALKAHIFTLSDN 526

Query: 538 NEERFAKILRKWARSEIEDR 557
           + E+   ++R W +++   +
Sbjct: 527 HMEQVVTLVRGWMKNDEAVK 546


>gi|302342347|ref|YP_003806876.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075]
 gi|301638960|gb|ADK84282.1| flagellar M-ring protein FliF [Desulfarculus baarsii DSM 2075]
          Length = 560

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 114/526 (21%), Positives = 218/526 (41%), Gaps = 35/526 (6%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
             ++N P Y  L+  L   D +++   L +  +D+++   G++I VP   V +AR+ LA+
Sbjct: 59  FLWLNQPDYQTLFSGLSQQDASQVVNQLKDMKLDYKLESGGTTILVPEESVYEARLTLAS 118

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
            GLP  ++  G+E+F++V   G T F+Q I   RAL+GE+ARTI S   +  ARVHIV+P
Sbjct: 119 AGLPRGTAGVGFEVFNEVQ-MGATDFVQRINYQRALQGELARTISSFGEVEDARVHIVLP 177

Query: 160 DMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F +   +P+A+V++R              + HLVA +VP+L    VT++D+ G LL
Sbjct: 178 RESLFVEDEKKPSAAVVVRLARGQSLSAGQIAGVVHLVAGSVPDLTDDRVTIVDTNGNLL 237

Query: 218 TANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
              +++       +    L   + ++      +   L   LG       V A+++     
Sbjct: 238 YRKDVDTADFPAALTASQLDYQKNLERGFVAKVQSMLEEVLGPGRAVVRVNADIDFTRTS 297

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
             + ++DPD    RS   + D   +  + P  +      +   +            TD +
Sbjct: 298 TTQDLFDPDQVAVRSETRASDKSINSGNMPIGSPDQRFTLAEANANPEEGQNQS-KTDTE 356

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEI 388
            E +NYEI+            L+RL++AV+++               +   +    + ++
Sbjct: 357 NETTNYEISRTQKQVQKAIGGLQRLTVAVMIDGPYKDAADAEGNTTRSFAPRSAEEMQQL 416

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            ++V  A G +++RGD +T+ ++ F      +   V     D L +     +N ++ L+ 
Sbjct: 417 TELVRRAVGYDAQRGDQVTLANIPFQLPVGTDDMGVMTWE-DYLKQWGKPALNIILALLF 475

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            L    L +    ++ +     + E+   +    P               +A  + ++ I
Sbjct: 476 FL----LVIRPALKMASRYVNARSELAAATRRVGPGEELPGGGMDEQAAALAESAMSRKI 531

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                                ++L + + + ER    LR W     
Sbjct: 532 G-----------------VRDQILLVAQQDPERATAALRGWIHETE 560


>gi|221640811|ref|YP_002527073.1| flagellar MS-ring protein [Rhodobacter sphaeroides KD131]
 gi|221161592|gb|ACM02572.1| Flagellar M-ring protein FliF [Rhodobacter sphaeroides KD131]
          Length = 542

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 116/549 (21%), Positives = 215/549 (39%), Gaps = 23/549 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         L   R  ++    +   +  +        P    LY  L+      +  A
Sbjct: 15  VQNLISIWNDLDGRRRAVVVGATVAMFLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTA 74

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L      + +   G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M
Sbjct: 75  LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 131

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +   +RA EGE+ARTI +   + AARVHI  P    FR+      +  +  +       
Sbjct: 132 FDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFRREQRPTASVTVTTSGGAVTAD 191

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A A +HLVA+AV  L   DV+V+DS   L+ + + + +         ++   E+  N+ 
Sbjct: 192 QARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAA----GESRAAELRSNVE 247

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G       V  ++    + I E  +DP  +V  S    + +  S    P+  V
Sbjct: 248 RLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--V 305

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P    +     +S   T +  E  N+E++            + RL++AV+V+  
Sbjct: 306 TVASNLPEGDAKGGTGGKST--TSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGI 363

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           +     G    + + +  LA + ++V +A G++  RGD +T+ S+ F       +     
Sbjct: 364 KTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAFETPPEAGTLAETG 423

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
               + +    ++I   V  +  L++    +  +        A    +         P  
Sbjct: 424 FLSRLGAFDLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPAL 483

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +                   D+        + ++         RL  +IE  +    +IL
Sbjct: 484 TGEIDDSG------------DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEIL 531

Query: 547 RKWARSEIE 555
           R W   + E
Sbjct: 532 RGWMEPQRE 540


>gi|303326607|ref|ZP_07357049.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3]
 gi|302862595|gb|EFL85527.1| flagellar M-ring protein FliF [Desulfovibrio sp. 3_1_syn3]
          Length = 548

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 120/557 (21%), Positives = 238/557 (42%), Gaps = 22/557 (3%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I + +       + +   + + +A   +  +   +    +V  P Y  LY  L   D + 
Sbjct: 5   IANFVDTLKGIWSKMSVIQRVAVAGGAVALLAAVIGLSVWVGRPEYRVLYSNLGAEDASH 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL    I ++++DNG++I VP  +V   RI +A +G        G+E+FDKV   G 
Sbjct: 65  VVKALQTDKIPYQLADNGATIMVPKEVVYDQRIKIAGEGG-LVGQGIGFEIFDKV-KVGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181
           T F+Q+I   RAL+GE++RTI     + +ARVH+V+P    F +    P+ASV+++    
Sbjct: 123 TDFVQKINYTRALQGELSRTISEFPSVESARVHLVIPQRSLFVEERQSPSASVVLKLTNP 182

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER--NILGKSLSIVQAI 237
            S        AI +++  AV  LD G V++ D+ GK+L   E +         +     +
Sbjct: 183 NSKPDQKEISAILNMMLMAVEGLDKGHVSITDNGGKVLYQPEEDSLAGASSTQMEHRLQV 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           Q  +E  I + L    G     + V A+++   + IR   +DP+    RS + S+++Q+ 
Sbjct: 243 QRNLERRIEEMLQPLFGPGRVIAKVNADMDFSQKTIRREFFDPEKTAVRSEQRSEESQQG 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +    A        +     +    S +N  ++   +NYEIN +      +   L RL
Sbjct: 303 RANLEAGAPDT-----NFRGDGITGSVSDQNGTRETRTTNYEINKEEQQIVANVGDLRRL 357

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AV+++     +  G+ +   +    L  + ++VS A G++  RGD + ++S  F +++
Sbjct: 358 TVAVIIDGTY-EKADGKWSFVPRKAEELDRVRQLVSNAVGLDKGRGDLLEVSSAPFTDSE 416

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                    +F D+L+ +   +   L+  +   L   L +  +         + GE+   
Sbjct: 417 PPKDP----NFADLLADYAERLGKPLLNALLAFLFLMLIVRPVVLALIRPKVEAGEM--- 469

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             +       A    L   + +   +   +           +     +     +  + + 
Sbjct: 470 --VEGLEGLPAAEEQLALYEALEEAAKADEEGPEQEEDDGELVFKDIEALKAHIFTLSDN 527

Query: 538 NEERFAKILRKWARSEI 554
           + E+   ++R W R++ 
Sbjct: 528 HMEQVVTLVRGWMRNDE 544


>gi|311086968|gb|ADP67048.1| flagellar MS-ring protein [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++L +  +F    +   +    ++  +    I   ++   ++ SP Y  LY  L   D  
Sbjct: 9   SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDSG 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG
Sbjct: 68  SIINELNEMKIPYQFTDSDGLILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++    
Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238
                     AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+
Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291
                 I   L   +G+ N  + V A+++ + Q+  +  Y P+S  +     S       
Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345
           +  + +   +    ++   N  + ++          N         ++   NYE+N    
Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T  +  +++RLS AV+VN                    +  I  ++  A G +  RGD+
Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + +  F +        +        S                    +    AL  L  
Sbjct: 422 VHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                          + P                      ++I   +       N+  + 
Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516

Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552
           +   ++ ++   N    A I+R+W   
Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543


>gi|145297444|ref|YP_001140285.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142850216|gb|ABO88537.1| lateral flagellar M-ring protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 584

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 126/584 (21%), Positives = 234/584 (40%), Gaps = 45/584 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILIL-ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +   ++ +  ++  SL R    IL  +++   +   +    + +S +Y  LY K E+ D 
Sbjct: 15  SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 74

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L +  + FR+  +   I VP S +   R+ LAA+G+  ++  SG E  D V   
Sbjct: 75  ANIMEMLEKEQVPFRLEKSSGQILVPESQLAHVRMALAARGV-RAAMPSGLEGLDTVTGL 133

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVM--I 177
           G + FM+      ALEGE+ARTI S+  + +ARVH+ +P    F  +   +P+ASVM  +
Sbjct: 134 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMMDL 193

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
           +          EAI +LVA ++  +  G VT++D  G+LL+A   +         + +  
Sbjct: 194 QPGQAMEPGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 253

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           V+ ++  I    +  L   LG  NFR  + A++N +  +  +   DP        + S  
Sbjct: 254 VRKLEQYIRQRASDMLYPMLGTSNFRVQIAADVNFNAVEETQQQLDPQG---VVTKESTK 310

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEIN 341
           + ++  +          N P  +  K   P   +     + Q N            YE +
Sbjct: 311 SDKTIDALALGIPGALSNRPPETTPKNEQPAQNQVEANTDTQKNDSRTERQEVSKQYENS 370

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
              + T +   +LE++++++++N+    +        G     L +I ++V  + G ++ 
Sbjct: 371 RTIVHTRYQQGRLEKMNVSILLNQQSAPKD-------GWSAEQLEQIRQMVERSVGFDNA 423

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD I++   DF                          +  LV  +  L + F G+  L 
Sbjct: 424 RGDQISLQVFDFTAAVPIVPPESGWWETPYWQDS----LRYLVGGLLGLTLVFFGIRPLV 479

Query: 462 RLHNIDDAKKGEVGGKSILSPP----------PISSAVTTGLMPNDNIALDSSNQDIFSH 511
           +          E   +    P              +A+T  +M N  I  D+  +  FS 
Sbjct: 480 KHLVRTQQLPDEEPTEEQDEPQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSS 539

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                        +     L  ++E +  R A+++R W     +
Sbjct: 540 LNLEALPEPGSELEVQLQHLQLLVEKDTARVAEVVRSWVSGNEQ 583


>gi|219681452|ref|YP_002467837.1| flagellar M-ring protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682008|ref|YP_002468392.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471127|ref|ZP_05635126.1| flagellar MS-ring protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621741|gb|ACL29897.1| flagellar M-ring protein [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624295|gb|ACL30450.1| flagellar M-ring protein [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086388|gb|ADP66469.1| flagellar MS-ring protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++L +  +F    +   +    ++  +    I   ++   ++ SP Y  LY  L   D  
Sbjct: 9   SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDSG 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG
Sbjct: 68  SIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++    
Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238
                     AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+
Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291
                 I   L   +G+ N  + V A+++ + Q+  +  Y P+S  +     S       
Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345
           +  + +   +    ++   N  + ++          N         ++   NYE+N    
Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T  +  +++RLS AV+VN                    +  I  ++  A G +  RGD+
Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + +  F +        +        S                    +    AL  L  
Sbjct: 422 VHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                          + P                      ++I   +       N+  + 
Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516

Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552
           +   ++ ++   N    A I+R+W   
Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543


>gi|126463732|ref|YP_001044846.1| flagellar MS-ring protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105396|gb|ABN78074.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
          Length = 542

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 219/549 (39%), Gaps = 23/549 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         L   R  ++ S  +   +  +    F   P    LY  L+      +  A
Sbjct: 15  VQNLISIWNDLDGRRRAVVVSATVAMFLAVLGLSQFAGRPPMALLYAGLQGPAAGEVVTA 74

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L      + +   G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M
Sbjct: 75  LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 131

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +   +RA EGE+ARTI +   + AARVHI  P    FR+      +  +  +       
Sbjct: 132 FDAAYLRAKEGELARTILASPKVKAARVHIAQPAAQPFRREQRPTASVTVTTSGGAVTAD 191

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A A +HLVA+AV  L   DV+V+DS   L+ + + + +         ++   E+  N+ 
Sbjct: 192 QARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAA----GESRAAELRSNVE 247

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G       V  ++    + I E  +DP  +V  S    + +  S    P+  V
Sbjct: 248 RLLEARVGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--V 305

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P    +     +S  +T +  E  N+E++            + RL++AV+V+  
Sbjct: 306 TVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGI 363

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           +     G    + + +  LA + ++VS+A G++  RGD +T+ S+ F       +     
Sbjct: 364 KTVADDGTVGWEPRPEEELAVLRELVSSAVGLDESRGDRLTLRSLAFETPPEAGTLAETG 423

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
               + +    ++I   V  +  L++    +  +        A    +         P  
Sbjct: 424 FLSRLGAFDLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPAL 483

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +                   D+        + ++         RL  +IE  +    +IL
Sbjct: 484 TGEIDDSG------------DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEIL 531

Query: 547 RKWARSEIE 555
           R W   + E
Sbjct: 532 RGWMEPQRE 540


>gi|311087544|gb|ADP67623.1| flagellar MS-ring protein [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++L +  +F    +   +    ++  +    I   ++   ++ SP Y  LY  L   D  
Sbjct: 9   SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDSG 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG
Sbjct: 68  SIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++    
Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238
                     AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+
Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291
                 I   L   +G+ N  + V A+++ + Q+  +  Y P+S  +     S       
Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345
           +  + +   +    ++   N  + ++          N         ++   NYE+N    
Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T  +  +++RLS AV+VN                    +  I  ++  A G +  RGD+
Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + +  F +        +        S                    +    AL  L  
Sbjct: 422 VHLVNASFAKYDQNIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                          + P                      ++I   +       N+  + 
Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516

Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552
           +   ++ ++   N    A I+R+W   
Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543


>gi|15616695|ref|NP_239907.1| flagellar MS-ring protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386782|sp|P57175|FLIF_BUCAI RecName: Full=Flagellar M-ring protein
 gi|25304707|pir||A84938 flagellar M-ring protein [imported] - Buchnera sp. (strain APS)
 gi|10038758|dbj|BAB12793.1| flagellar M-ring protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 545

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 213/567 (37%), Gaps = 48/567 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++L +  +F    +   +    ++  +    I   ++   ++ SP Y  LY  L   D  
Sbjct: 9   SVLKEKKKFNNFLSGFLKNSRFLIILLTAAAITA-VSISVWIKSPEYQVLYNHLSNEDRG 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+EL DK   FG
Sbjct: 68  SIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGFELLDKE-KFG 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           ++ + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + +AS+++    
Sbjct: 126 ISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQP 185

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQ 238
                     AI HL+++++ +L + ++T++D +GKLL    +E   +        + I+
Sbjct: 186 GRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVNDSQFKYTEEIE 245

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS------- 291
                 I   L   +G+ N  + V A+++ + Q+  +  Y P+S  +     S       
Sbjct: 246 TRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQSIRSHQIIIHN 305

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQSNYEINTKSI 345
           +  + +   +    ++   N  + ++          N         ++   NYE+N    
Sbjct: 306 EIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNTVNYELNHSVS 365

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T  +  +++RLS AV+VN                    +  I  ++  A G +  RGD+
Sbjct: 366 HTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREAIGYSKARGDS 421

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + +  F +        +        S                    +    AL  L  
Sbjct: 422 VHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WFCSFALLFLLL 469

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                          + P                      ++I   +       N+  + 
Sbjct: 470 KKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQVDLQNNTNTD 516

Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552
           +   ++ ++   N    A I+R+W   
Sbjct: 517 KLIHKICNISNQNPRTIALIIRQWMSD 543


>gi|90577381|ref|ZP_01233192.1| flagellar M-ring protein [Vibrio angustum S14]
 gi|90440467|gb|EAS65647.1| flagellar M-ring protein [Vibrio angustum S14]
          Length = 581

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 102/527 (19%), Positives = 199/527 (37%), Gaps = 28/527 (5%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S +Y  LY + E  D   I   L    I +R+ +    + V    V K R+ LAA+G
Sbjct: 62  WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI ++  I  ARVH+ +P  
Sbjct: 122 I-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180

Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +  A    + +   ++          EAI +LV  +V  +   +V+V+D  G+LL+
Sbjct: 181 TLFVRHNAEAPTASVMVELKPGEDLKTDQVEAIINLVTGSVTGMKTENVSVVDQYGRLLS 240

Query: 219 ANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           A+     +     K L   + ++ ++       L   +G  N+R  V A+L+    Q  +
Sbjct: 241 ADIGSSEMGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETK 300

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            V D            +    S  +          N P V+  +     S    ++ E  
Sbjct: 301 EVVD---STPVVKNEHRIENNSIDNIALGVPGSLSNKPPVTGEE-ENKDSKNTNERTEIN 356

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y + +    T +   KL +L+++V++N                 ++   +I+ ++  A
Sbjct: 357 RQYALGSSVRHTQYQQGKLNKLNVSVLLNSTAAPNGK------AWTEAETQQISNMIKDA 410

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI++ RGD+++I S +F    +     +       + +    +I      +  L + F 
Sbjct: 411 VGISADRGDSLSILSFNFTPIAIDAPPAIPWWQDPTVQQPLRYMI----GGILGLSMIFF 466

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS-------SNQDI 508
            L  L       D ++ E+             ++ T         L+           + 
Sbjct: 467 VLRPLISHLTGLDRRRDELTFAEEDIAHSYDESLQTREEQEHEETLNERLAAKGIDGTNN 526

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             ++ N          +     L  +     ER A++L++W      
Sbjct: 527 AFNASNDLLPPQGSPLEIQLKHLQLISTEEPERVAEVLKQWVNVNES 573


>gi|212637769|ref|YP_002314294.1| flagellar MS-ring protein [Shewanella piezotolerans WP3]
 gi|212559253|gb|ACJ31707.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3]
          Length = 572

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 115/569 (20%), Positives = 207/569 (36%), Gaps = 39/569 (6%)

Query: 7   LLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           L    +      R  R   + ++  +     +    +  S  Y  LY   E  D  +I  
Sbjct: 22  LNTLKEKWRDFNRGDRQAAVLAIFAIVAACVIVLMLWSASQGYRPLYGNQENVDTAQIIE 81

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I +R+  +   + V    +G+AR+ LAA+G+  +   SG +  D  +  G + F
Sbjct: 82  VLESEGISYRLDASSGLVLVVEDKLGRARMLLAARGV-KAKVPSGMDSLDS-SGIGTSQF 139

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA--INP 182
           M++     +LEGE++RTI ++  + +ARVH+ +P    F +     P+ASVM+     + 
Sbjct: 140 MEQAKYRYSLEGELSRTIMALKAVRSARVHLAIPKKTLFIRQQPELPSASVMLDLYSGSN 199

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSLSIVQAIQ 238
              ++ E+I +LVA +V  +    V V+D  G  L    +AN+       + L   Q ++
Sbjct: 200 IQPENIESIVNLVAGSVTGMTPERVQVVDQNGNHLSSAISANKDITQARDRQLKYTQELE 259

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +    +  L   LG DNF+  V A++N +  +  +   DP   V    + ++ +  + 
Sbjct: 260 QSLIGRASSMLQPILGQDNFQVQVSAKVNFNQVEETKESLDP---VSVVTQENQSSNETN 316

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                       N P  +  +    R   N     E   +++      T     +LE LS
Sbjct: 317 ADMALGIPGALSNQPPAATPEENNNRRNINQK---ESRQFDVGRSVRHTRFQQMQLENLS 373

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V++N     E        G     L +++ +V  A G +  RGD  +I S +F    +
Sbjct: 374 VSVLLNSQAAGET-------GWSQPQLQQLSSMVQDAIGFSQARGDQFSINSFEFAPITV 426

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGEVGG 476
                +     +    +    I      V  L +    L  L            K +   
Sbjct: 427 AQFEPMPWWQGESYQAYLRYFI----GAVLGLGMIIFVLRPLVAHLTRTVEYNLKDDGSN 482

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----------RINSYVSKQ 526
                 PP   + T   + NDN     +  D         S                   
Sbjct: 483 IEPKRIPPADVSPTDLTLNNDNKDDPQAMADKLMGLDKNPSNGEWSSDIGLPAAGSPLAV 542

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
               L  +      R A+++  W   + E
Sbjct: 543 KMEHLSLLANQEPARVAEVIGHWISEKDE 571


>gi|254228798|ref|ZP_04922221.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262396483|ref|YP_003288336.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|151938745|gb|EDN57580.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262340077|gb|ACY53871.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
          Length = 569

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 106/566 (18%), Positives = 219/566 (38%), Gaps = 30/566 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  +L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 17  DVTTKLKQIWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V K R+ LA++G+  +   +G +   + +S G
Sbjct: 72  EIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLG 130

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  +   ++ +   ++
Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELK 190

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 191 PGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +  + + D                
Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETQEILD---NAPVVRNEHTIHN 307

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+  +V    S     + E    Y + +    T +   ++E
Sbjct: 308 NSVDQIALGVPGSLSNQPPVTGEEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 367

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++S++V++N     +           ++   +I+ ++  A GI++ RGD++++ S +F  
Sbjct: 368 KMSVSVLLNSKASPDG------VAWSEADKEQISNMIMDAVGISAARGDSLSLMSFNFTP 421

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            ++     +       + +     I  ++  +  L + F  L  L       D    E+ 
Sbjct: 422 IEIDAPPALPWWQDPTVQQ----PIRYVIGGLLGLAMIFFVLRPLIMHLTGVDKPVPELD 477

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530
                  P   +  T     ++ +     ++   S S  L              +     
Sbjct: 478 FAEPQEEPDYDNLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLKH 537

Query: 531 LLHMIEINEERFAKILRKWARSEIED 556
           L  +     ER A+IL++W       
Sbjct: 538 LQLIANEEPERVAEILKQWVNINEHS 563


>gi|283853241|ref|ZP_06370492.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B]
 gi|283571346|gb|EFC19355.1| flagellar M-ring protein FliF [Desulfovibrio sp. FW1012B]
          Length = 546

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/564 (19%), Positives = 225/564 (39%), Gaps = 36/564 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +     +  +  ++    + ++L  +     + F+   + +N      LY  +   D +R
Sbjct: 5   LSQTFEKLIQYWSNRSAAQRILLGGLAGSMAIAFLVMVYLLNQAEMRVLYTNMAPEDASR 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L  +   + + +NG+++ VP+  V + R+ +A +G+       G+ELFD++   G 
Sbjct: 65  VVELLKASKTPYELRENGTTVLVPAEAVYEQRLKVAGEGVMH-GQGVGFELFDQL-KVGQ 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180
           T F+Q I   RAL+GE++RTI     +  ARVH+V+P    F +   + +ASV++     
Sbjct: 123 TDFVQRINYSRALQGELSRTITEFPQVEKARVHLVLPQKSLFIEEQKKASASVVLTLKRG 182

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAI 237
                K  + I +LVA +V  L    +T+ D+TG+ L     +     +           
Sbjct: 183 QKLDAKQLQGIVNLVAMSVEGLTPEHITITDTTGQSLYQPRADGGLDGLSTTQFEFKNTF 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +E  I + L   +G     +    +L+   + +R+ +YDP+  V RS + S+++   
Sbjct: 243 EANLENRIEQLLTPIVGPGRALAKANVDLDFSQRTVRKELYDPNVTVVRSEQKSEESTSG 302

Query: 298 ETSQPESAVTVEQ-------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +      T             +          S + + ++   +NYEIN +       
Sbjct: 303 SAAVDAGGATTTPRGGGAAVPNSNFRGDGYSGTESTQKSSRQNSTTNYEINKEEQNVVTP 362

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRS-ADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              L+R SIAV+V+          +     +    L  I ++V+ A G++  RGD I ++
Sbjct: 363 VGDLKRQSIAVIVDGTYEKVEGKNTFTFVPRKAEELERIKQVVARAAGLDPARGDEIQVS 422

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           S +F         ++  + ++   R     +N L+  +  +    L +  +         
Sbjct: 423 SFEFGVPDGSGEPSLMQTMLEYAQRLGKPFLNGLLLFLFLI----LVVRPVVLALIRPRV 478

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            + E+     L       A+      ++   LD + Q   S +  L              
Sbjct: 479 TEEEIETLERLPEGEARLALAEAEEGDEVTMLDGAKQFELSKNLAL-------------- 524

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
               + E N E+   +L+ W + E
Sbjct: 525 ---QLFEENMEQSMTLLKSWLKQE 545


>gi|332559789|ref|ZP_08414111.1| FliF2 [Rhodobacter sphaeroides WS8N]
 gi|332277501|gb|EGJ22816.1| FliF2 [Rhodobacter sphaeroides WS8N]
          Length = 533

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/549 (20%), Positives = 216/549 (39%), Gaps = 23/549 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         L   R  ++    +   +  +        P    LY  L+ +    +  A
Sbjct: 6   VQNLISIWNDLDGRRRAVVVGATVAMFLAVLGLSQLAGRPPMALLYAGLQGAAAGEVVTA 65

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L      + +   G S+ V ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M
Sbjct: 66  LEAQGAAYEVR--GDSVYVEAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQM 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +   +RA EGE+ARTI +   + AARVHI  P    F++      +  +  +       
Sbjct: 123 FDAAYLRAKEGELARTILASPQVKAARVHIAQPAAQPFQREQRPTASVTVTTSGGAVTAN 182

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A A +HLVA+AV  L   DV+V+DS   L+ + + + +         ++   E+  N+ 
Sbjct: 183 QARAFKHLVASAVAGLQPEDVSVIDSVMGLIRSGDEKDSATAA----GESRAAELRSNVE 238

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A  G       V  ++    + I E  +DP  +V  S    + +  S    P+  V
Sbjct: 239 RLLEARAGPGRAVVEVSVDVETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--V 296

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P    +     +S  +T +  E  N+E++            + RL++AV+V+  
Sbjct: 297 TVASNLPEGDAKGGTGGKS--STSETRETVNFEVSQTQRELMRQPGAIRRLTVAVLVDGI 354

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           +     G    + + +  LA + ++V +A G++  RGD +T+ S+ F       +     
Sbjct: 355 KTVADDGTVGWEPRPEEELAVLRELVGSAVGLDESRGDRLTLRSLAFETPPEAGTLAETG 414

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
               + +    ++I   V  +  L++    +  +        A    +         P  
Sbjct: 415 FLSRLGAFDLMSLIQIGVLALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPAL 474

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +                   D+        + ++         RL  +IE  +    +IL
Sbjct: 475 TGEIDDSG------------DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEIL 522

Query: 547 RKWARSEIE 555
           R W   + E
Sbjct: 523 RGWMEPQRE 531


>gi|119947167|ref|YP_944847.1| flagellar MS-ring protein [Psychromonas ingrahamii 37]
 gi|119865771|gb|ABM05248.1| flagellar M-ring protein FliF [Psychromonas ingrahamii 37]
          Length = 582

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 113/557 (20%), Positives = 228/557 (40%), Gaps = 22/557 (3%)

Query: 2   AILDQLLQFFKSGTSLGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
            +   L  + K    L  +R    + +V L  ++  +    + +S +Y  LY   E  + 
Sbjct: 40  TLFSALSVWGKILYLLKNSRKSFAVITVFLTALVTILVILLWSSSSNYRPLYGIQEPYNN 99

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           + I  AL   NI +++  +   I V    V K R+ LAA+G+  ++   G  +  K ++ 
Sbjct: 100 SDILAALEAENIKYQMQPDTGLILVEDGEVAKIRMLLAAKGV-KATLPEGLSVLGKQSAL 158

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI-- 177
           G + F++       LEGE+A+TI S++ I  ARVH+ +P    F  +     TA+VM+  
Sbjct: 159 GTSQFIENARYNLGLEGELAKTIMSLNAINNARVHLAIPKENLFVGRGDNIATAAVMLDV 218

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIV 234
           ++ +        +I +LVA +V NL+   V++ D +G+LL+    +        K L   
Sbjct: 219 KSGDKLSVAQITSIMNLVAGSVNNLNPESVSITDQSGRLLSDDVNDGEYSLASSKQLEYK 278

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
             I+ +I+      L   LG +NFR    A+++   +Q     +D  + V  S    +D 
Sbjct: 279 AGIEQQIKKQAKSMLIPILGENNFRIESAADIDFSKKQETMERFD-ATPVLLSEMSIEDD 337

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            +S             + P V D +   P + +   ++E    Y + +    T +   K+
Sbjct: 338 DQS--DIAIGIPGSLSSTPPVVDGQESTPNNSKKKLRRELNRKYAVGSSVTHTEYQQGKI 395

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
             +S++VV+NK    +              L++IN ++S+A G++  RGD+I +TS  F 
Sbjct: 396 NHISLSVVINKDIAPD-------GEWTADELSKINAMISSAVGLDLNRGDSINVTSFTF- 447

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                 +      + +   +   +++  ++  +  +++  + L  L +   ++++ K   
Sbjct: 448 SPIQVTNPVAAAWYEETRWQ---SLLKIIISGLVAMMLIIVVLRPLIKHITVNNSAKDAG 504

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
              +       S+                      + S        +         L  +
Sbjct: 505 PLPAEHQAIAQSTQDKEKEFAQRLAEYGIGETASGNDSMMQMLPSPNSPLSVQIQHLQLI 564

Query: 535 IEINEERFAKILRKWAR 551
            + +  R ++IL+ W  
Sbjct: 565 SKEHPNRVSEILKNWVN 581


>gi|254473325|ref|ZP_05086722.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
 gi|211957441|gb|EEA92644.1| flagellar M-ring protein FliF [Pseudovibrio sp. JE062]
          Length = 562

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 191/566 (33%), Positives = 324/566 (57%), Gaps = 19/566 (3%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           MA  +   + + +   LG  R+++LA + L   +   AA + ++ P  + LY  LE  DV
Sbjct: 1   MAARENAEKIYSNLAELGAKRLMVLAFIGLFTFVAIGAAAYLLSRPEQEVLYANLERDDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I +AL  + I F +S +GS+ISV      +AR+ LA +GLP   S +GYELFD++ S 
Sbjct: 61  TQIGMALQASGIPFDVSADGSAISVGVGATARARMLLAEKGLPR-GSGAGYELFDEMGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLTSFMQ +T++RALEGE+AR++QS+ G+ AARVH+V+P+  +FR+   +PTASV+IR  
Sbjct: 120 GLTSFMQSVTKIRALEGEVARSVQSMQGVKAARVHLVLPEKATFRRENQKPTASVLIRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQH 239
                  A++IR+LVAAAVP L    VTVLD+ G+LL A  + +    G+   +   +  
Sbjct: 180 GIQTNSIAQSIRYLVAAAVPGLTAEAVTVLDTEGQLLAAGEDAQSASTGRKAMLESNLAS 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
             E  I +ALA +LGV+NF  +V A +N D Q++ E  YDP+++VERS R+ ++   S+ 
Sbjct: 240 RKENAIRQALAPYLGVNNFEVSVSASVNTDNQRVSETSYDPETRVERSFRVVRENATSQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +  E+  TVEQN+P  +       RS E  +++EE +NYEI+++++ T  D+Y++ER+SI
Sbjct: 300 ASLENPTTVEQNLPEEAVSSQSGERSSEENERREELTNYEISSRTVETIFDDYRIERMSI 359

Query: 360 AVVVNKGRLTEVLGRSADQGKID-----------SYLAEINKIVSAATGINSRRGDTITI 408
           AV+VN+ RL E + R  +  K D           + + EI +I++ A G+++ RGD +++
Sbjct: 360 AVLVNRDRLVEEMSRRVEGQKGDAVVEGEAADLTAKVEEIEEIIATAAGVDTARGDKVSV 419

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           ++++F+      +   + ++ D+L R+  +V+NA   L+ TL++ + GL           
Sbjct: 420 SAVNFVLAGQQLAAIPERTWQDVLMRNMGSVVNAGAILIVTLMIIWFGLRPAVAFLIPKT 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
               E       S    S+AV  G +  ++  L   +         + + +   V++ + 
Sbjct: 480 EVVEEGLPVGANS---NSAAVRDGEIEGEDGQLPDYSNGDGLSGEGVDATV---VNRDNL 533

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
            +L   +E+++ + A IL++W   + 
Sbjct: 534 RKLERAVEMDDMQAAIILKQWMYDQE 559


>gi|83955113|ref|ZP_00963769.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1]
 gi|83840442|gb|EAP79615.1| flagellar FliF M-ring protein [Sulfitobacter sp. NAS-14.1]
          Length = 564

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 142/566 (25%), Positives = 255/566 (45%), Gaps = 24/566 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +     +  SLG+ ++++L    +  ++L +     V  P Y  LY  L ++  N I   
Sbjct: 1   MQGLIDNLKSLGKNKLMMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEAT 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L+ A  +  +S++G+SISVP     +AR+ LA  G+P      G+ELFD+ +   + SF+
Sbjct: 61  LANAGFNAMVSEDGTSISVPRGDAVRARMVLAETGMPIDGDP-GWELFDESSGLAMNSFL 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184
           Q+I ++RA+EGE+AR+IQ++ GI +ARVH+V+PD   F +    P AS+++R        
Sbjct: 120 QKINKMRAMEGELARSIQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVT 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
            K A A+ +LVA+AV +LD+  VTVL ++G+ + A   + +  G   S    I+  +   
Sbjct: 180 RKQAVAVSNLVASAVADLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQE 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   L A +G  N R  V  EL    + I E  YDPD +V RS     + Q         
Sbjct: 240 IQNILTARVGAGNARVHVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTGTKE--AG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            V VE N+P           +     + +E   YEI         +   + R+S+AV+VN
Sbjct: 298 NVGVENNIPAALAD-GNGAGTSTRRSEADEIVQYEIGNTRREIVREAGDVRRMSVAVLVN 356

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                +         +    LA + ++V  A G ++ RGD++++ SM F++  +     +
Sbjct: 357 GIYNVDGS-DVIYAERTPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPI 415

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL--------------HNIDDAK 470
             S  D L+ +  +++  ++ L+   L+   G+  + R                  + A 
Sbjct: 416 DKSIGDELTDNVVSIVRGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAA 475

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQS 527
           +          P    +      +  D+  L  ++ DI +        +  I   + K+ 
Sbjct: 476 EPAALTAEGQRPKLPGTTPAVADIAEDDDPLTVTDDDIEAAEVAEYVRKEGIRGNLHKKK 535

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
              +  + +   +   +++R W  +E
Sbjct: 536 IETIQQLADEKPQEVLRVIRSWLPAE 561


>gi|157373218|ref|YP_001471818.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3]
 gi|157315592|gb|ABV34690.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3]
          Length = 570

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 104/568 (18%), Positives = 213/568 (37%), Gaps = 32/568 (5%)

Query: 5   DQLLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + +           R  R +++ +++   +   +    +  S  Y  LY + E  + ++I
Sbjct: 20  EIVSSLKTKWQQFNRGDRQVLVLAILASVVACVIVLLLWTASQGYRPLYGQQEKVETSQI 79

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L    I++R+  N   + V    +GKAR+ LAA+G+  +   SG E  D  +  G +
Sbjct: 80  IEVLEAEGINYRLEANSGLVLVQEDKLGKARMLLAARGV-KAKVPSGMESLDN-SGIGTS 137

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR-PTASVMIRA--I 180
            FM++     +LEGE++RTI ++  +  ARVH+ +P    F +     P+ASVM+     
Sbjct: 138 QFMEQAKYRHSLEGELSRTIMALKAVRTARVHLAIPKRTLFIRQQPELPSASVMLDLYAG 197

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQA 236
           +       EAI +LVA +V  +    V ++D  G  L++    N+       + L   Q 
Sbjct: 198 SKIQPGQIEAIANLVAGSVTGMTPERVQIVDQEGNHLSSGIAINQDITQARDRQLKYTQE 257

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++  +    +  LA  LG +NF+  + A++N +  +      DP S      +  +    
Sbjct: 258 LEQSLINRASSMLAPVLGKENFQVQIAAQVNFNQVEETRESLDPQS---VVTQEKQSIND 314

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           + +           N    +        +  N ++ +E   YE+      T     +LE 
Sbjct: 315 TNSDIAMGIPGALTNQAPKAQANKTEENTRRNLNQ-QESRQYEVGRSVRHTRFQQMQLEN 373

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N          + + G  ++ ++++  +V  + G + +RGD  +I S DF   
Sbjct: 374 LSVSVLLNNQA-------AGENGWNEAQVSQLGTMVKDSIGYSMQRGDQFSINSFDFAPV 426

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
           Q+     +     +    +    I      +    + F  L  L            +   
Sbjct: 427 QIAQFEPMPWWQTEGYQAYLRYFI----GGILGFGLIFFVLRPLVSHLTRTAEHSLKEEL 482

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS-------RINSYVSKQSDL 529
             +       S+ +   + + +    +         ++                      
Sbjct: 483 PQVEPALEAPSSSSISGVQSGDGQALADQLMGLEQDKSDTDWLSNQGLPAPGSPLTVKME 542

Query: 530 RLLHMIEINEERFAKILRKWARSEIEDR 557
            L  +      R A+++  W      +R
Sbjct: 543 HLSLLANQEPARVAEVIAHWIGDNENER 570


>gi|89072278|ref|ZP_01158857.1| flagellar M-ring protein [Photobacterium sp. SKA34]
 gi|89051810|gb|EAR57262.1| flagellar M-ring protein [Photobacterium sp. SKA34]
          Length = 582

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 109/561 (19%), Positives = 218/561 (38%), Gaps = 30/561 (5%)

Query: 10  FFKSGTSL--GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           + K+  +L     R L+L++V+   +   +    + +S +Y  LY + E  D   I   L
Sbjct: 28  YMKNLKNLWHSSQRNLVLSAVLAAIVAAIIVVALWSSSQNYRPLYGQQERFDSGEIISVL 87

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I +R+ +    + V  S V K R+ LAA+G+  +   +G +   + +S G + FM+
Sbjct: 88  ETEGIPYRLQEANGQVLVAESEVAKIRMLLAAKGI-KAKLPTGLDSLKEDSSLGTSQFME 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSV 184
                  LEGE+ RTI ++  I  ARVH+ +P    F +  A    + +   ++      
Sbjct: 147 TARYRHGLEGELVRTIIALDAIANARVHLAIPRKTLFVRHNAEAPTASVMVELKPGEDLK 206

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEI 241
            +  EAI +LV  +V  +   +V+V+D  G+LL+A+        +  K L   + +++++
Sbjct: 207 TEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLSADIGSAEMGKVNAKYLDYQKNLENQV 266

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
                  L   +G  N+R  V A+L+    Q  + V D            +    S  + 
Sbjct: 267 IQRAADMLTPIVGPSNYRVQVAADLDFSHVQETKEVVD---STPVVKNEHRIENNSIDNI 323

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                    N P V+  +     S    ++ E    Y + +    T +   KL +L+++V
Sbjct: 324 ALGVPGSLSNKPPVTGEE-ENKDSKNTNERTEINRQYALGSSVRHTQYQQGKLNKLNVSV 382

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           ++N                 ++   +I+ ++  A GI++ RGD+++I S +F    +   
Sbjct: 383 LLNSTAAPNGK------AWTEAETQQISNMIKDAVGISADRGDSLSILSFNFTPIAIDAP 436

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             +       + +    +I      +  L + F  L  L       D ++ E+      +
Sbjct: 437 PAIPWWQDPTVQQPLRYMI----GGILGLSMIFFVLRKLISHLTGLDRRRDELTFAEEDT 492

Query: 482 PPPISSAVTTGLMPNDNIALDS-------SNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                 ++ T         L+           +   ++ N          +     L  +
Sbjct: 493 AHSYDESLQTREEQEHEETLNERLAAKGIDATNNAFNASNDLLPPQGSPLEIQLKHLQLI 552

Query: 535 IEINEERFAKILRKWARSEIE 555
                ER A++L++W      
Sbjct: 553 STEEPERVAEVLKQWVNVNES 573


>gi|304438472|ref|ZP_07398412.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368555|gb|EFM22240.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 526

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 131/563 (23%), Positives = 237/563 (42%), Gaps = 53/563 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++ L  +K      R R ++L S + + +++F  + ++ + P    L+  +E  D   +
Sbjct: 5   KERSLALWKRFDK--RQRYIMLGSALAILVLVFGLSFWYGSKPDMVPLFTDMETKDAGEV 62

Query: 64  SVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +  L E+ I + I +N  G++I VP++ V +AR++LA QGLP    N G+E+FD  +  G
Sbjct: 63  ANQLRESKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPH--GNKGFEIFD-DSKLG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T F   +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R   
Sbjct: 120 VTEFQNRVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKP 179

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSLSIV 234
                 K  + I +L A ++  L   ++T++D TGK+L   + +            L + 
Sbjct: 180 HAELTKKEIKGIVNLAAHSIKGLTPENITIVDDTGKILNDPDDQDEKGLGAKTITQLEMT 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
           + +Q  IE  +   L   LG     + V  EL+ D +      + P   D+ + RS +  
Sbjct: 240 RKVQDNIEKKVQTLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDI 299

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            ++    ++ P     V+ N+P           +    +KKE   NYEIN +        
Sbjct: 300 SESYNGSSTNPGGPAGVQSNVP---GYVEQESNANAAYEKKESTKNYEINEERQHVIASP 356

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + R+++AV+VN                       I + VS+A GIN  RGDTI++  +
Sbjct: 357 GSIRRMTVAVLVNDDV-------------TQPQQESILRTVSSAAGINQTRGDTISVEPL 403

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F             +  D   R F   + A++ ++  ++   L     +RL        
Sbjct: 404 PFSTEAADRRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAILMYRRKKRL-------- 455

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                          +A     +  + +A + +                        L L
Sbjct: 456 ------------EREAAEEAKRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNEKLAL 503

Query: 532 LHMIEINEERFAKILRKWARSEI 554
           L +I+   E  A +++ W   E 
Sbjct: 504 LALIDSKPEEVALLVKTWLTEEE 526


>gi|292669732|ref|ZP_06603158.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541]
 gi|292648529|gb|EFF66501.1| flagellar M-ring protein FliF [Selenomonas noxia ATCC 43541]
          Length = 526

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 132/563 (23%), Positives = 234/563 (41%), Gaps = 53/563 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            ++ L  +K      R R ++L S + + +++F  + ++ + P    L+  +E  D   +
Sbjct: 5   KERGLAMWKRFDK--RQRYIMLGSALAILVLIFGLSFWYGSKPDMVPLFTDMETKDAGEV 62

Query: 64  SVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +  L E+ I + I +N  G++I VP++ V +AR++LA QGLP    N G+E+FD  +  G
Sbjct: 63  AKQLRESKISYEIQENKSGTTILVPTTNVHEARLNLATQGLPR--GNKGFEIFD-DSKLG 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T F   +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R   
Sbjct: 120 VTEFQNRVNYLQALQGELTRTIEQIEAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKP 179

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKSLSIV 234
                 K  + I +L A +V  L   ++T++D TGK+L   + +            L + 
Sbjct: 180 NAELTKKEIKGIVNLAAHSVKGLMPENITIVDDTGKILNDPDDQDENAIGVKTLTQLDMT 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
           + +Q  IE  +   L   LG     + V  EL+ D +      + P   D+ + RS +  
Sbjct: 240 RKVQDNIEKKVQSLLDQTLGEGRAFARVSVELDFDDRLTDRQTFTPVVDDAGIIRSQQDI 299

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            ++    ++ P     V+ N+P           +    +KKE   NYEIN +        
Sbjct: 300 SESYVGNSTNPGGPAGVQSNVP---GYVEQEANANAEYEKKESTKNYEINEERQHVIASP 356

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + RL++AV+VN                       I + VS+A GIN  RGDTI++  +
Sbjct: 357 GSIRRLTVAVLVNDDV-------------TQPQQESILRTVSSAAGINPTRGDTISVEPL 403

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F           + +  D   R F   +   + ++  ++   L     +RL        
Sbjct: 404 PFSTEAAERRAAEEQAEKDRQDRIFYAQVGLALLIIALIVGGILMYRRKKRL-------- 455

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                          +A     +     A + +                        L L
Sbjct: 456 ------------EREAAEEAQRIEEARAAEERAAAIAAGEVEEEDLSEEEQHQMNQKLAL 503

Query: 532 LHMIEINEERFAKILRKWARSEI 554
           L +I+   E  A +++ W   E 
Sbjct: 504 LALIDSKPEEVALLVKTWLSEEE 526


>gi|89068713|ref|ZP_01156099.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
 gi|89045676|gb|EAR51738.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
          Length = 562

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 144/563 (25%), Positives = 250/563 (44%), Gaps = 18/563 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +     +  SLG+ R++ LA+  +      +     V +P Y  LY  L  S   ++   
Sbjct: 1   MQSIINNLMSLGQRRLIALAATGIGLTAALLLGVGAVLAPTYAPLYSGLSPSGAAQVVGT 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A     +S +G+ +SVP S + +AR+ LA QGLP      G+ELFD     G+ SFM
Sbjct: 61  LEQAGFRVDVSADGTMVSVPDSDLARARMALADQGLPDEGVP-GWELFDNSTGLGMNSFM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-- 184
           Q I R+RALEGE+AR+IQ+I  + +ARVH+V+P+  +F +    P+ASV++RA   S   
Sbjct: 120 QRINRLRALEGELARSIQTIDAVDSARVHLVLPEREAFSRARPEPSASVIVRASGRSEIG 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
              A AIR+LVAAAVP+L    VTVL ++G+ + A++ E        S+  +++  +  +
Sbjct: 180 RNQARAIRNLVAAAVPDLAPSRVTVLSASGETILADDGEPGSDVSLQSVRASLEDRMSRS 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I++ L+A +G  N R  V  +L  + Q I +  YDP+ +V RS     +      +  + 
Sbjct: 240 IDQILSARVGAGNARVQVSVDLTTERQVILQQSYDPNQRVVRSTETRNETVEDTQAGQD- 298

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENT-DKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
            V    N+P     +        +     +E  NYEI +       +   +E++S+AV+V
Sbjct: 299 QVDAAGNLPEALGGEAEGSTGARSNRTAADEIVNYEIGSTRSEVIREPGDVEKISVAVLV 358

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           N        G    + +    +  + ++V +A G +++RGDT+++ S+ F++  +     
Sbjct: 359 NGIYNRLPNGDVEYEERPPEEIERLTRLVESAVGYDAQRGDTVSVESLRFMDYSMELGDG 418

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                  +L  + +  +  L  +    LV   G+  L           G +      +P 
Sbjct: 419 TGGGIGQLLLGNASAAMRGLFAIGIVALVMLFGVRPLATRLTARQEPDGLIAQSPDGAPL 478

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI-------------NSYVSKQSDLR 530
           P               A   +          L   +             N  V +     
Sbjct: 479 PAVRPAEAAPGAPRPAAGAGAEGVSAMPDAELYDPLRGAQGEYVNLAAVNGSVQRNRLQA 538

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  ++E+      ++LR W   E
Sbjct: 539 IGELVEVEPAESLRVLRTWLAQE 561


>gi|462109|sp|Q04954|FLIF_CAUCR RecName: Full=Flagellar M-ring protein
 gi|144247|gb|AAA66325.1| flagellar M-ring protein [Caulobacter crescentus CB15]
 gi|13422171|gb|AAK22889.1| flagellar M-ring protein [Caulobacter crescentus CB15]
          Length = 536

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 124/521 (23%), Positives = 225/521 (43%), Gaps = 12/521 (2%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            F+     + LY  L++ + + ++ AL +A I +    +GS+I VP   V  AR+ +A +
Sbjct: 17  MFMGKEPSELLYSNLDLKEASEVTQALDQAGIKYETKGDGSTIMVPRDKVASARLMVAGK 76

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GL SS S  GYE+FD  N+ G T F+Q++ R RAL+GE+ RTI+++ G+ + RVH+V+P 
Sbjct: 77  GLVSSGS-IGYEIFDTNNALGQTDFVQQLNRQRALQGELERTIKAMQGVNSVRVHLVLPK 135

Query: 161 MGSFRKIGARPTASVMIRAINPS-VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              F +   +P+A+V I   +         AI++LV+++VPN+    V V+D  GK L+A
Sbjct: 136 RQLFEEDAEQPSAAVTIGVGSREPSSDMVRAIQNLVSSSVPNMKAEKVAVIDQHGKTLSA 195

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
              E      +      ++  I   +   +   LG    R  V AEL+++    +E  +D
Sbjct: 196 PSDESLAGKMAQDRKSEVEARIAKTVKDMIEGVLGPGKARVNVTAELDLNRVTTQEERFD 255

Query: 280 PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           PD +V RS   ++ + +   +   + VT   N+P               T + +  +NYE
Sbjct: 256 PDGQVIRSESTTEASSQENKNDDNAGVTAAANVPGGQGANGFQQLGSR-TGQNDAVTNYE 314

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRL-TEVLGRS-ADQGKIDSYLAEINKIVSAATG 397
           I+     T  +   ++++++AV ++         G+  A   +    + +I ++V  A G
Sbjct: 315 ISKSVTTTVQEPGTIKKIAVAVAIDGVSAPMAADGKPGAYTPRTAQEIQQIEELVKTAVG 374

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            ++ RGD + +T++ F + +       Q                  V  V  LL+    +
Sbjct: 375 FDAERGDQVRVTNIKFPQPEDQGLE-EQGLLAGFDKNDIMRAAELGVLAVVALLILLFAV 433

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN------DNIALDSSNQDIFSH 511
               +  +     +  + G S   P      +  G                +        
Sbjct: 434 RPFIKNLSAPAPGQIALAGPSGGPPVTRLVTLADGTQQQVVVDQSGEPIALAGPPVSDID 493

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            R   ++I   V   S  R+   +E + +    ILR W   
Sbjct: 494 QRIDIAKIEGQVKASSIKRVSEFVEKHPDESVAILRNWLHE 534


>gi|152990373|ref|YP_001356095.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2]
 gi|151422234|dbj|BAF69738.1| flagellar M-ring protein FliF [Nitratiruptor sp. SB155-2]
          Length = 542

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 129/564 (22%), Positives = 241/564 (42%), Gaps = 36/564 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++L Q F++        + +   +  + ++L       +++  Y  LY  L   D  
Sbjct: 7   TIKEKLKQAFEN--KNFIKTLFLALGIGALIVLLSALLIRDISAEKYGVLYANLTADDAG 64

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L E  I +++  NG  I VP   +   R+ LAA+GLP S  N G+E+FD+    G
Sbjct: 65  NILTVLQEEKIPYKVEGNGKIILVPKDKIYDVRLKLAAKGLPRSQ-NVGFEIFDE-PKMG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           +T F + I  +RALEGE+ARTI+ I  +  ARV+I +P    F +      ASV+I    
Sbjct: 123 ITHFQENINYIRALEGELARTIKKIDAVQDARVNIALPKDSIFAREEDEAKASVIISLHP 182

Query: 182 PSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAI 237
                 +  +AI  LV+ AVP L   +VTV+D++G++L+    E E   +   + + +  
Sbjct: 183 GMSLTKEQVKAIVFLVSHAVPKLKSQNVTVVDNSGRVLSDMLEENEEKEVHDVVDLKRKF 242

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +IE ++   LA  LG          E+       R+ +YDPD     S R  ++  +S
Sbjct: 243 RRDIEKSVESMLARALGAQKVVVRANVEIETAKIDKRDEIYDPDKTAVVSERKIQEKSKS 302

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
              QP  +     N+P  +    P    L++  KK+  +NY++    I T  + +K++++
Sbjct: 303 IPQQPIGSPGTPTNVP-ATINTGPNGTVLQDKSKKDITTNYDVTKSLIVTKQNVFKIKKI 361

Query: 358 SIAVVVNKGRLTEVLGRSADQ----GKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++ V+++   + ++      Q     + +  L     ++ +A G + +RGD +T+ S+ F
Sbjct: 362 TVGVLIDGKYIKKMDKNGTMQVEFVPRSEQELKSFENLIKSAIGYDPKRGDQVTVVSVPF 421

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
               L     V+  F   +      ++  +  L     + +  L   ++           
Sbjct: 422 ENQALAAPMQVKRGFERYILYAAFALLAIMALL-----LIWFILKQRKQKV--------- 467

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                 L    +++A   G      +   S               +      Q   ++LH
Sbjct: 468 ------LLEQELATATQPGTTTPQGLTESSRKALHELEEEMSALSLQDEPIYQ---KILH 518

Query: 534 MIEINEERFAKILRKWARSEIEDR 557
           + + N +  A ++ KW + E   +
Sbjct: 519 IAQENPDLIATLISKWIKEEGSGK 542


>gi|329849956|ref|ZP_08264802.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19]
 gi|328841867|gb|EGF91437.1| flagellar M-ring protein FliF [Asticcacaulis biprosthecum C19]
          Length = 554

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 139/555 (25%), Positives = 235/555 (42%), Gaps = 11/555 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +  FF      G  R+  +         + +A    +++     LY  L++ + + I+ A
Sbjct: 1   MESFFNGLQRFGIGRLTAILGAAAGIAAVILAIVLNISAQPQSLLYSNLDLKEASEITTA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  I +    +GS+I V    V +AR+ LA++GLP+ +S  GYE+FD   + G T  +
Sbjct: 61  LSQGGIKYEAKGDGSTIMVNRDQVAEARMMLASKGLPTQAS-VGYEIFDDAPALGQTEAV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRAINPSVY 185
           Q I   RALEGE+ARTI+++ GI +ARVH+VMP    F         + V+  +      
Sbjct: 120 QNINNQRALEGELARTIRTLRGISSARVHLVMPKRELFEDAAGQPTASVVLGLSGGSLSS 179

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMN 244
           +S  AIR++VA AVPNL   +VT++D    LL A  + +  +     +    I+  +   
Sbjct: 180 ESVAAIRNVVATAVPNLKADNVTIVDDRNHLLAAGGDSDSAMGVAGSARKSEIEDSVRKR 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           + + +   +G    R  V AE++       ++ Y+PD +V RS   +   + +       
Sbjct: 240 VMEIVEGVVGPGAARVMVTAEIDQTATTREQVEYNPDGQVVRSTSTNSGTETTADPNSAG 299

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
             T   N+P        L  S  ++ +  E +N+EI+T          ++++L++AVVV+
Sbjct: 300 QTTATANIPGTQQA-PNLSTSGNSSQQDSEVTNFEISTTKTTEVKAPGEIKKLAVAVVVD 358

Query: 365 KGRLTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
                   G+   A   +    +  I ++V AA G +  RGD + ++++ F         
Sbjct: 359 GVETPSADGKAPPAYAPRSAEDMQRIQELVQAAVGYDQTRGDQVRVSNIRFSRGDFAAGT 418

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG-----EVGGK 477
             +    D         I   V  +  LLV FL    L +  N   A  G       GG 
Sbjct: 419 DAKPPLFDFDKNDIMRAIEVAVLFIVALLVIFLIARPLLKFINGGGAAGGNFLGTANGGS 478

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                    +  +      DNIA            R   +RI   V   S  ++   ++ 
Sbjct: 479 QAALAGAAVTGPSISYQAADNIAATGLVPTQEQEQRIDIARIEGQVKASSVKKVSEFVDR 538

Query: 538 NEERFAKILRKWARS 552
           + E    ILR W   
Sbjct: 539 HPEESVSILRSWLHD 553


>gi|209545569|ref|YP_002277798.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533246|gb|ACI53183.1| flagellar M-ring protein FliF [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 547

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 127/551 (23%), Positives = 233/551 (42%), Gaps = 16/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +         LGR ++  L     V + +     F         LY  +++ +   +   
Sbjct: 1   MQNILAGLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L++A+I    S +G+SI VP   V  AR+ LA  GLP S    GYELFDK  +   T F 
Sbjct: 61  LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSV 184
           Q I   RA+EGE+ R+I+ + G+   RVH+V+P    F    +   ASV++         
Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEI 241
               +AI++LVAAAVP L   +++++D+ G +L       +  G+      +  A +  +
Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             ++   L   LG  + R+     +  D     +  YDP+ +V RS + +  + +S  ++
Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTT--SDKSVNTE 297

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                TV  N+P+ +  +     S +  D++E+ +NYEI  +    +    ++ R+S+AV
Sbjct: 298 ASPNTTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+     +  G+   Q    + +  I  +   A G +  RGD + + SM F+ +     
Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            T   S +         +   ++ ++  L   F+G+  + R   I+         +  L 
Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALAAGHLQEGLP 473

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                 A   G + N+       +  I S        I   +  ++  ++   IE + + 
Sbjct: 474 GI----AGHAGRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529

Query: 542 FAKILRKWARS 552
              I+R W   
Sbjct: 530 SVLIIRNWLAE 540


>gi|260432137|ref|ZP_05786108.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415965|gb|EEX09224.1| flagellar M-ring protein FliF [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 531

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 140/549 (25%), Positives = 233/549 (42%), Gaps = 20/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q      SL R + +I+A   ++  +  +A    V SP    LY  LE      I  A
Sbjct: 1   MQQIGTVWASLDRRKQIIVAGAAILVFLSVLAMSRVVTSPSMTLLYAGLEAGAAGDIVRA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + I   G SI VP S   + R+ LA++GLP++  N GYEL D ++ FG TS M
Sbjct: 61  LDQRGVTYEIR--GGSIYVPVSKRDELRMTLASEGLPANG-NRGYELLDSLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI S   +  ARVHI       F++  A   +  ++ A      +
Sbjct: 118 FDAAYWRAKEGELARTIVSSPHVSQARVHIANGSSNPFQRSVAPTASVYLVPAGARVTVE 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A+AIR LVA+AV  L   DV V+DS G ++   E        +          +   + 
Sbjct: 178 QAKAIRFLVASAVTGLAPEDVAVIDSNGAVIGPQE-----AVVATDTADDKARLLRERVL 232

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G  N    V  +   +T+ IRE  +DP  +V  S  + + +  S     +  V
Sbjct: 233 RLVEARVGPGNAVVEVSVDTVTETESIRERRFDPKGRVAISTDIEERSDSSRNQSSD--V 290

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S     +  E+ NYE++   +        ++RL++AV+VN  
Sbjct: 291 TVASNLPDGDA--AGGDESNSTATQTRERVNYEVSETELEVHRVPGAIKRLTVAVIVNGT 348

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           R  +  G    +   +  L  + ++V++A G ++ RGD IT+ SM+ L +          
Sbjct: 349 RTVDASGTPVFEPMPEPELEALQELVASAVGFDAERGDVITLKSME-LPDLEPQGTLATA 407

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S    +     ++I   V  + +L++    +  +  L +   A           +  P  
Sbjct: 408 SIWHSIHLDAMSLIQMAVLAIVSLVMGLFVIRPI--LTSAPVAALPPAANGPNAADAPFL 465

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                     +   L ++ +   +     Q+R     S+ +  RL  MI   +E   +IL
Sbjct: 466 VGEIEDAAGQELTQLPAAPEQGSTTPAIAQAR-----SEDAVARLRSMIGDKQEETVEIL 520

Query: 547 RKWARSEIE 555
           R W     E
Sbjct: 521 RSWLEESEE 529


>gi|221636057|ref|YP_002523933.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159]
 gi|221157932|gb|ACM07050.1| flagellar M-ring protein FliF [Thermomicrobium roseum DSM 5159]
          Length = 530

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 124/552 (22%), Positives = 219/552 (39%), Gaps = 37/552 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
               +    L + R + + +V L  +              Y  L+  L   D   I   L
Sbjct: 10  ESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSADDAAAIIDQL 69

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  + +++S++G++ISVP   V K R+ LAAQGLP S    G+ELFD+ +SFG+T F Q
Sbjct: 70  RQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSG-TLGFELFDR-SSFGVTDFQQ 127

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
            +   RALEGE+ARTI  + G+ +ARVH+V+P+   F       TA+V+++         
Sbjct: 128 RVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSDQQQPTTAAVVLQLKPGSRLTD 187

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
           +    + HLV+A+VP L    VTV+D +G  L +         +   L   +A +  +  
Sbjct: 188 EQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQRAFETAMAT 247

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQRSETSQ 301
            +   +A  +G +N    V A  + D +Q+   +Y P+      RS +          S 
Sbjct: 248 QLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERVQTSEGTASG 307

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
           P     V+ N+      +    ++ + ++ +E   NYE++ +         K++RLS+AV
Sbjct: 308 PIGIPGVDSNVGSYQ--EGAAQQNQQRSELRETTVNYELSRQVERVVQAPGKVQRLSVAV 365

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+N   +              +   ++  +V+AA GI   RGD +T++ + F       S
Sbjct: 366 VLNSAAV------------DPAVAEQVRDLVAAAAGIVPERGDQVTVSVVPFTTATAEES 413

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                     L             ++  LL   +    L    +             +L 
Sbjct: 414 AAQP-----TLMDRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPRYEVATQVLP 468

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                +A  +            +   +   S              +   L  + + +   
Sbjct: 469 GAAAGAAAPSVAGGGAAGLPGQAEAALKPPSGPPP----------TLRELQELAKKDPAT 518

Query: 542 FAKILRKWARSE 553
            A ++R W   E
Sbjct: 519 VAHVVRAWLNEE 530


>gi|162147460|ref|YP_001601921.1| flagellar MS-ring protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786037|emb|CAP55619.1| putative flagellar M-ring protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 547

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 128/551 (23%), Positives = 234/551 (42%), Gaps = 16/551 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +     S   LGR ++  L     V + +     F         LY  +++ +   +   
Sbjct: 1   MQNILASLKGLGRKQLAALGGAAAVLLTILGFLVFQGGGQTMALLYGDVDLGEAAEMIDD 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L++A+I    S +G+SI VP   V  AR+ LA  GLP S    GYELFDK  +   T F 
Sbjct: 61  LAKAHISSTTSPDGTSIYVPRDKVASARLLLAKDGLP-SGGAVGYELFDKSGTLTSTQFE 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSV 184
           Q I   RA+EGE+ R+I+ + G+   RVH+V+P    F    +   ASV++         
Sbjct: 120 QTINETRAMEGELERSIRLVHGVRNVRVHLVLPHRDLFSTQTSPSQASVVLDIGRAGRMA 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS---LSIVQAIQHEI 241
               +AI++LVAAAVP L   +++++D+ G +L       +  G+      +  A +  +
Sbjct: 180 PDGIQAIQNLVAAAVPGLRPQNISIVDTRGDVLVKPGDPDSAAGQESTIEKLQHAEEQRL 239

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
             ++   L   LG  + R+     +  D     +  YDP+ +V RS + +  + +S  ++
Sbjct: 240 AQDVEDMLVPTLGAGHVRARAAVTMATDEIHETDESYDPNQQVLRSEQTT--SDKSVNTE 297

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                TV  N+P+ +  +     S +  D++E+ +NYEI  +    +    ++ R+S+AV
Sbjct: 298 ASPNTTVSNNLPNANANQDNKTGSSD--DREEDTNNYEIGKRVRVISQTRPRVSRISLAV 355

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +V+     +  G+   Q    + +  I  +   A G +  RGD + + SM F+ +     
Sbjct: 356 MVDGMVTRDKNGKDVWQPLDTAEIQNITTLAKTAIGYDQSRGDEVNVVSMRFMPDGGLGF 415

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
            T   S +         +   ++ ++  L   F+G+  + R   I+         +  L 
Sbjct: 416 PTSTGSVLS--RDTLIYIAEWVIPIILALGAIFIGIRPMLRRGAINLPALAAGHLQEGLP 473

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                 A   G + N+       +  I S        I   +  ++  ++   IE + + 
Sbjct: 474 GI----AGHAGRIGNEMTGALIPSAHIGSDGTVSIDGIEGKMRAEAIAKVASRIEESTQE 529

Query: 542 FAKILRKWARS 552
              I+R W   
Sbjct: 530 SVLIIRNWLAE 540


>gi|91223211|ref|ZP_01258477.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
 gi|91192024|gb|EAS78287.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
          Length = 570

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 220/567 (38%), Gaps = 31/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  +L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 17  DVTTKLKQIWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V K R+ LA++G+  +   +G +   + +S G
Sbjct: 72  EIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLG 130

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  +   ++ +   ++
Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELK 190

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 191 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           +++ +I       L   +G  NFR  V A+L+    +  + + D                
Sbjct: 251 SVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD---NAPVVRNEHTIHN 307

Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            S             N P V+   +V    S     + E    Y + +    T +   ++
Sbjct: 308 NSVDQIALGVPGSLSNQPPVTGSGEVETSDSQNTNARSEVNRQYAVGSSVRRTQYQQGQI 367

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E+LS++V++N     +           ++   +I+ ++  A GI++ RGD++++ S +F 
Sbjct: 368 EKLSVSVLLNSKASPDG------VAWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFT 421

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             ++     +       + +     I  ++  +  L + F  L  L       D    E+
Sbjct: 422 PIEIDAPPALPWWQDPTVQQ----PIRYVIGGLLGLAMIFFVLRPLIMHLTGVDKPVPEL 477

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDL 529
                   P   +  T     ++ +     ++   S S  L              +    
Sbjct: 478 NFAEPQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLK 537

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A+IL++W       
Sbjct: 538 HLQLIANEEPERVAEILKQWVNINEHS 564


>gi|297617138|ref|YP_003702297.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144975|gb|ADI01732.1| flagellar M-ring protein FliF [Syntrophothermus lipocalidus DSM
           12680]
          Length = 512

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 124/550 (22%), Positives = 231/550 (42%), Gaps = 64/550 (11%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
              + L   + ++++  +L+ ++          + +Y+ LY  L V D   I+  L E  
Sbjct: 17  NRWSLLTLNQKVLISGAVLLTLVSLGMLLSSQTAKNYEPLYSGLSVEDAAAITKKLDELK 76

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I +R+SD GS+I VPS    + R+ LA +GLP     +G+ELF +  SFG T   + +  
Sbjct: 77  ISYRLSDEGSTILVPSEQKYQVRLQLAGEGLPK--GTAGFELF-QSTSFGETETDKRVKY 133

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAE 189
           + AL+GE+ RTI+S+  I +ARVH+V+P+   +    A  TASV+++         +   
Sbjct: 134 LTALQGELVRTIESLDKIESARVHLVLPEPRLYVDQEAPATASVVLKVKIGEELTNREIS 193

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEIEM 243
            I HLVA +V  L   +V V+D  G LL+A+    + +         +++ + ++ E + 
Sbjct: 194 GIVHLVANSVEKLKPENVVVVDQYGNLLSADIPSADSMASAELSVQQMAVKRQLEREKQQ 253

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L A LG       V AELN D  +     +DP+ +V  S    +++  S  +   
Sbjct: 254 AVQSMLDATLGPGKSVVRVNAELNFDEVEQYSQDFDPEQRVVVSKHTVEESNTSSNTGAA 313

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           ++  V+ N+P     +     S   ++K E+  NYE +     T      ++R+++AV+V
Sbjct: 314 ASPGVDTNVPTYQGTEGQGTSSS-TSEKTEQTVNYEGDKVETKTKVAPGAIKRMTVAVLV 372

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
           ++G               +S   EI + V  A G + +R D++ ++ M F       +  
Sbjct: 373 DEGF--------------ESKREEIVEAVKNAVGADEKRNDSVYVSFMKFQTPTEETAPP 418

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                          ++ A +     + V    L   R+                     
Sbjct: 419 ASTWQ--------KYMLPAGLGATLVIAVLLFWLARRRK--------------------- 449

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                     + ++ I ++S  +   +     + +I           +  +I+ N    A
Sbjct: 450 -AQEQEGFEALVDEEIPIESLVERELTPEEREKLKI--------REEIDKLIDENPADVA 500

Query: 544 KILRKWARSE 553
           +I+R W   E
Sbjct: 501 QIIRTWLLEE 510


>gi|269103174|ref|ZP_06155871.1| flagellar M-ring protein FliF [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163072|gb|EEZ41568.1| flagellar M-ring protein FliF [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 581

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 217/552 (39%), Gaps = 27/552 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    E S++  +  AL +  I+
Sbjct: 43  LGNLDLLRQVILVLAVAICVSLIIMVMMWIKEPEMRPL-GNYETSELITVLDALDQKKIE 101

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+      ++ LA  G  +  +  G ++  K   FG++  +++     
Sbjct: 102 YQL--DGNTIRVPADQYSAIKLTLARDGWSAPEAQ-GDDILLKNMGFGVSQRLEQERLKL 158

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++AR I+ I  +  A+V + +P    F +     +A+V +   + +       ++I
Sbjct: 159 SRERQLARAIEQIKQVRKAQVLLALPKQSVFVRNNQDASATVFLTLSSGATLGQQEVDSI 218

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKAL 249
             +VA+AVP L    VTV D  G+LL++   + +   K       +  +  +   I+  L
Sbjct: 219 VDMVASAVPGLKPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQTLREKIDAIL 278

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG+ N+ S V   ++  + +  +  +DP     RS  + +D   S  ++        
Sbjct: 279 MPILGLGNYTSQVDVSMDFSSLEETQKQFDPSKPATRSEFILEDLNNS--NRVGGIPGAL 336

Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P                    + +  +EE  NYE++T           + R +++V 
Sbjct: 337 SNQPPADSAIPQDVKDLQSGKSLSDGSVHREETRNYELDTTIRHKRSQTGTIARQTVSVA 396

Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+   +T+   G+       D+ L +I +++    G +  RGD + + SM F   +    
Sbjct: 397 VDYKNITDPKTGKVTRVPVSDAELEKIRRLLMGGVGFSQARGDLLEVISMPFALPEELAL 456

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
               +      S     +      LV  +++  L   A+R+L   +   +G    ++ + 
Sbjct: 457 ANPPIWENPNFSSWIRWI---AAALVIIVMIIVLIRPAMRKLLYPNQTAEGIPLDENGVP 513

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                    T +  + +        D    S +     + +  +     +  ++    + 
Sbjct: 514 MLNHHGDGITLIGSDLDAG------DSLELSTSQLELPSLHRDEDLLKAVRALVANEPDL 567

Query: 542 FAKILRKWARSE 553
            A++++ W    
Sbjct: 568 AAQVIKNWMSEN 579


>gi|91200223|emb|CAJ73267.1| similar to flagellar MS ring protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 584

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/587 (19%), Positives = 231/587 (39%), Gaps = 41/587 (6%)

Query: 1   MAI-LDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M + ++    Q       +  +   I+ S+ L  ++  +    +   P +  LY +L   
Sbjct: 1   MNLDMNSFTGQLKNVWKEISFSHKFIMISLTLSFLIGIVGVMQWARKPDFGLLYGELSPK 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +   I   L EANI +RIS NG++I VP+  + + R+  A++GLP     +GYEL DKV 
Sbjct: 61  ESGEIINHLREANIPYRISGNGTTILVPNDKIYEMRLKFASEGLPHEQ--TGYELLDKV- 117

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
            FG + F+Q+I   RA++GE+A+TI+ +  +  A+VH+ +P+   F +    PTASV+++
Sbjct: 118 GFGSSDFIQKINYRRAIQGELAKTIKHLDFVDWAQVHLAIPEKSLFVEDEKPPTASVVLK 177

Query: 179 A--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKSLSI 233
                    +   +I HLV+++V  L   +VTV D+ G LL+  E    +       L I
Sbjct: 178 LKTGGKLKPERVASIVHLVSSSVEGLIPENVTVTDTRGNLLSEKESPFSQTGASNDQLEI 237

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            + I+          L   +G       V A+L+      ++I +DP+ +V +   ++  
Sbjct: 238 KKKIEEYYVAKAQDMLDRIVGAGKSVVRVSADLDFRHVDEKQIEFDPERRVPKVQTVTTK 297

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                         ++ N+     +   L  S  + +++  Q+ YE++      +     
Sbjct: 298 VSGGTPFSGGGVPGMQANL--NLSQSSMLQSSGSSEEEETAQTQYELSKVERMVSDHGAN 355

Query: 354 LERLSIAVVVNKGRLTEVLG----RSADQGKIDSYLAEINKIVSAATGIN-SRRGDTITI 408
           L+RLS+AV+V+             +     + +  +  I  +V  A G+N   R D+  I
Sbjct: 356 LKRLSVAVLVDGKYEKIESEDGKIQQTYVSRNNEEMKGIASLVKQALGVNMVSRNDSFEI 415

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            ++ F E        +     +        +       +  L+     L +++++     
Sbjct: 416 QNVQFYEADYAEEEAIL--KKEQQKEFMLKLAKNGSLGITVLMFLMFMLRSMKKIKKKAA 473

Query: 469 AK----------------------KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
                                       G   +     IS          + +       
Sbjct: 474 PTVEMEHFSAKGKSGKQGFAKMQHDDTAGRNKLFEELRISKERQGIQYTKEELEAAVEEM 533

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                S N +  +     ++    +L  ++ + +  +  L++W   E
Sbjct: 534 LAMEESENPEEIMEGMKREKKRKLILGHMQKDTDLTSTALKRWIEGE 580


>gi|269965409|ref|ZP_06179529.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
 gi|269830055|gb|EEZ84284.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
          Length = 583

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 220/567 (38%), Gaps = 31/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  +L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 30  DVTTKLKQIWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V K R+ LA++G+  +   +G +   + +S G
Sbjct: 85  EIVSVLESEGVSYRMQEQNGQVLVPEGEVAKVRMLLASKGV-KAKLPTGLDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  +   ++ +   ++
Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNSENPSASVMLELK 203

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 204 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           +++ +I       L   +G  NFR  V A+L+    +  + + D                
Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADLDFSQVEETQEILD---NAPVVRNEHTIHN 320

Query: 296 RSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            S             N P V+   +V    S     + E    Y + +    T +   ++
Sbjct: 321 NSVDQIALGVPGSLSNQPPVTGSGEVETNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQI 380

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E+LS++V++N     +           ++   +I+ ++  A GI++ RGD++++ S +F 
Sbjct: 381 EKLSVSVLLNSKASPDG------VAWSEADKEQISNMIMDAVGISATRGDSLSLMSFNFT 434

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             ++     +       + +     I  ++  +  L + F  L  L       D    E+
Sbjct: 435 PIEIDAPPALPWWQDPTVQQ----PIRYVIGGLLGLAMIFFVLRPLIMHLTGVDKPVPEL 490

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDL 529
                   P   +  T     ++ +     ++   S S  L              +    
Sbjct: 491 NFAEPQEEPDYENLQTREEREHEEVLDRRLSEKGISASSGLDVNSDMLPPAGSPLEIQLK 550

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A+IL++W       
Sbjct: 551 HLQLIANEEPERVAEILKQWVNINEHS 577


>gi|330447943|ref|ZP_08311591.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492134|dbj|GAA06088.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 580

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/523 (19%), Positives = 201/523 (38%), Gaps = 28/523 (5%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S +Y  LY + E  D   I   L    I +R+ +    + V    V K R+ LAA+G
Sbjct: 62  WSSSQNYRPLYGQQERFDSGEIISVLETEGIPYRLQEANGQVLVAEGEVAKIRMLLAAKG 121

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI ++  I  ARVH+ +P  
Sbjct: 122 I-KAKLPTGLDSLKEDSSLGTSQFMETARYRHGLEGELVRTIIALDAIANARVHLAIPRK 180

Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +  A    + +   ++       +  EAI +LV  +V  +   +V+V+D  G+LL+
Sbjct: 181 TLFVRHNAEAPTASVMVELKPGEDLKTEQVEAIINLVTGSVTGMKTENVSVVDQYGRLLS 240

Query: 219 ANEMERNI---LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           A+     +     K L   + ++ ++       L   +G  N+R  V A+L+    Q  +
Sbjct: 241 ADIGSTEMGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNYRVQVAADLDFSHVQETK 300

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            V D            +    S  +          N P V+  +     S    ++ E  
Sbjct: 301 EVVD---SAPVVKNEHRIENNSIDNIALGVPGSLSNKPPVTGEE-ENKDSKNTNERTEIN 356

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y + +    T +   KL +L+++V++N                 ++   +I+ ++  A
Sbjct: 357 RQYALGSSVRHTQYQQGKLNKLNVSVLLNSTAAPNGS------AWTEAETQQISAMIKDA 410

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI++ RGD+++I S +F    +     +       + +    +I      +  L + F 
Sbjct: 411 VGISADRGDSLSILSFNFTPIAIEAPPAIPWWQDPTVQQPLRYMI----GGILGLSMIFF 466

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS-------SNQDI 508
            L  L       D  + E+       P      + T        +L+         + + 
Sbjct: 467 VLRPLITHLTGLDRGRKELTFAEEDIPQEYDENLKTRAEQEHEESLNERLAAKGIESANN 526

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
             ++ N          +     L  +     ER A++L++W  
Sbjct: 527 ALNASNDLLPPQGSPLEIQLKHLQLISNEEPERVAEVLKQWVN 569


>gi|238927418|ref|ZP_04659178.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
 gi|238884700|gb|EEQ48338.1| flagellar M-ring protein FliF [Selenomonas flueggei ATCC 43531]
          Length = 526

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 132/557 (23%), Positives = 227/557 (40%), Gaps = 52/557 (9%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVNRISVALSE 69
                   + +  I+    LV + L     F+  + P    L+  +E  D   ++  L E
Sbjct: 9   LALWKRFDKRQRYIMLGSALVILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLRE 68

Query: 70  ANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + I + I +N  G++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F  
Sbjct: 69  SKISYEIQENKSGTTILVPTANVHEARLNLAVQGLPR--GNKGFEIFD-DSKLGVTEFQN 125

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVY 185
            +  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R         
Sbjct: 126 RVNYLQALQGELTRTIEQIEAVDKARVHIVLPEDSLYKKEEKPATASIMLRLKPNTELTK 185

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-----RNILGKSLSIVQAIQHE 240
           K  + I +L A +V  L   ++T++D TGK+L   + +            L + + +Q  
Sbjct: 186 KEIKGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKGLGVKTITQLDMTRKMQDS 245

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRS 297
           IE  I   L   LG     + V  EL+ D +      + P   DS + RS +   ++   
Sbjct: 246 IEKKIQTLLDQTLGEGRAFARVSLELDFDDRLTDRQTFTPVVDDSGIVRSQQDISESYTG 305

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            ++ P     V+ N+P           +    +KKE   NYEIN +          + R+
Sbjct: 306 SSTNPGGPAGVQSNVP---GYVEQESNANAAYEKKESTKNYEINEERQHVIASPGSIRRM 362

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AV+VN                       I + VS+A GIN  RGDTI++  + F    
Sbjct: 363 TVAVLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLPFSTEA 409

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                    +  D   R F   + A++ ++  ++   L     +RL              
Sbjct: 410 AERRAAELQAEKDRQDRIFYMQVGAVLLIIALIVAAVLMYRRKKRL-------------- 455

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                    +A     +  + +A + +                        L LL +I+ 
Sbjct: 456 ------EREAAEEAQRLEEERLAEERAAAIAAGEVEEEDLSEEEQQQMNQKLALLALIDS 509

Query: 538 NEERFAKILRKWARSEI 554
             E  A +++ W   E 
Sbjct: 510 KPEEVALLVKTWLTEEE 526


>gi|320529385|ref|ZP_08030473.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399]
 gi|320138351|gb|EFW30245.1| flagellar M-ring protein FliF [Selenomonas artemidis F0399]
          Length = 526

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 129/552 (23%), Positives = 225/552 (40%), Gaps = 52/552 (9%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVNRISVALSEANI 72
                + +  I+    L  + L     F+  + P    L+  +E  D   ++  L EA I
Sbjct: 12  WERFDKRQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKI 71

Query: 73  DFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + + D  NG++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F   + 
Sbjct: 72  SYEVQDGKNGTTILVPTTNVHEARLNLATQGLPR--GNKGFEIFD-DSKLGVTEFQNRVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188
            ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R         K  
Sbjct: 129 YLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPGTELTKKEI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243
           + I +L A +V  L   ++T++D TGK+L   + +            L + + +Q  IE 
Sbjct: 189 KGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEK 248

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETS 300
            +   L   LG     + V  EL+ D +   +  + P   D+ + RS +   +     ++
Sbjct: 249 KVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSST 308

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P     V+ N+P           +    +KKE   NYEIN +          + RL++A
Sbjct: 309 NPGGPAGVQSNVP---GYVEQESNANAQYEKKESTKNYEINEERQHVIASPGSIRRLTVA 365

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+VN                       I + VS+A GIN  RGDTI++  + F +     
Sbjct: 366 VLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLPFSKEAAER 412

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
               + +  D   R F   +  ++ ++  ++   L     +RL                 
Sbjct: 413 RAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRL----------------- 455

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                 +A     +  + IA + +                          LL +I+   E
Sbjct: 456 ---EREAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQALLALIDAKPE 512

Query: 541 RFAKILRKWARS 552
             A +++ W   
Sbjct: 513 EVALLVKTWLSE 524


>gi|260901174|ref|ZP_05909569.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|308109395|gb|EFO46935.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
          Length = 571

 Score =  318 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 213/567 (37%), Gaps = 32/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + ++L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 17  DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 72  EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 130

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +      ++ +   ++
Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGETPSASVMLELK 190

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +L+  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 191 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +    + D                
Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 307

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 308 NSIDQIALGVPGSLSNQPPVTGD-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 366

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           D+  A+I+ +++ A GI++ RGD++++ S +F  
Sbjct: 367 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 420

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +       + +     +  ++  +  L + F  L  L       D    E+ 
Sbjct: 421 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 476

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529
                   P    + T         L+        +        +          +    
Sbjct: 477 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 536

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A+IL++W       
Sbjct: 537 HLQLIANEEPERVAEILKQWVNINEHS 563


>gi|313895975|ref|ZP_07829529.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975400|gb|EFR40861.1| flagellar M-ring protein FliF [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 526

 Score =  318 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 129/552 (23%), Positives = 225/552 (40%), Gaps = 52/552 (9%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFF-VNSPHYDNLYVKLEVSDVNRISVALSEANI 72
                + +  I+    L  + L     F+  + P    L+  +E  D   ++  L EA I
Sbjct: 12  WERFDKRQRYIMLGSALAILALIFGLSFWYGSKPDMVPLFTDMETKDAGEVANQLREAKI 71

Query: 73  DFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + + D  NG++I VP++ V +AR++LA QGLP    N G+E+FD  +  G+T F   + 
Sbjct: 72  SYEVQDGKNGTTILVPTTNVHEARLNLATQGLPR--GNKGFEIFD-DSKLGVTEFQNRVN 128

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188
            ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M+R         K  
Sbjct: 129 YLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKEEKPATASIMLRLKPSTELTKKEI 188

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHEIEM 243
           + I +L A +V  L   ++T++D TGK+L   + +            L + + +Q  IE 
Sbjct: 189 KGIVNLAAHSVKGLTPENITIVDDTGKILNDPDDQDEKSVGVKTLTQLDMTRKVQDNIEK 248

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETS 300
            +   L   LG     + V  EL+ D +   +  + P   D+ + RS +   +     ++
Sbjct: 249 KVQSLLDQTLGEGRAVARVSVELDFDDRLTDKQTFTPVVDDAGIIRSQQDISENYTGSST 308

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P     V+ N+P           +    +KKE   NYEIN +          + RL++A
Sbjct: 309 NPGGPAGVQSNVP---GYVEQESNANAQYEKKESTKNYEINEERQHVIASPGSIRRLTVA 365

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+VN                       I + VS+A GIN  RGDTI++  + F +     
Sbjct: 366 VLVNDDV-------------TQPQQESILRTVSSAAGINQARGDTISVEPLPFSKEAAER 412

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
               + +  D   R F   +  ++ ++  ++   L     +RL                 
Sbjct: 413 RAAEEQAEKDRQDRIFYAQVGIVLLIIALIVGGILMYRRKKRL----------------- 455

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                 +A     +  + IA + +                          LL +I+   E
Sbjct: 456 ---EREAAEEAQRIEEERIAEERAAAIAAGQVEEEDLSEEEQQQMNQKQALLALIDAKPE 512

Query: 541 RFAKILRKWARS 552
             A +++ W   
Sbjct: 513 EVALLVKTWLSE 524


>gi|85711042|ref|ZP_01042102.1| flagellar M-ring protein [Idiomarina baltica OS145]
 gi|85694955|gb|EAQ32893.1| flagellar M-ring protein [Idiomarina baltica OS145]
          Length = 570

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 97/557 (17%), Positives = 206/557 (36%), Gaps = 26/557 (4%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                   +    R +++   + + + + +    +     +  L  K+E   +      L
Sbjct: 28  QSIVDKLANFDMLRQVVVILALAICVAIAIFIMLWAQESTFRPL-AKMETEQLVGTLDYL 86

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS-GYELFDKVNSFGLTSFM 126
              NI++++  +G+ +SVP       ++ L   G+    S S G ++      FG++  +
Sbjct: 87  DANNIEYKV--DGNVVSVPEENYDAVKLQLTRAGVDYGQSESNGSDILMSEPGFGVSQRL 144

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SV 184
           +    + + E ++AR I+ +  + AARV + +P    F +   +P ASVM+         
Sbjct: 145 ERERLIHSREIQLARAIEEMRAVSAARVLLAVPKENVFARREKQPKASVMLNVKGNQSLS 204

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIE 242
            +   +I  +VA++V +L+   VTV D  G+LL +          S      +  + E  
Sbjct: 205 EEEIASIVDMVASSVTSLETSQVTVTDQNGRLLNSGSQSALAATNSREYQLERKREEEYL 264

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             I+  L   LG DN+ + V   ++    +  + +Y+PD    RS    +   RS  +  
Sbjct: 265 NKIDSILIPVLGYDNYTAQVDVTMDFTQSEKTQRLYNPDMPAIRSEMTVE--NRSAGTAV 322

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLER 356
                   N P +            +      +  +E   NYE++     T   +  +ER
Sbjct: 323 GGIPGALSNQPPLESNIPEQATGAGSQRDATGSMHREATRNYELDNTVSYTRSQSGTIER 382

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V VN+   T   G    Q      LA I +++    G +  RGDTI + S+ F + 
Sbjct: 383 LSVSVAVNQPMTTNADGEQVPQPASPEQLANIRRLLQGGIGFDLSRGDTIEVVSVPFAQL 442

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
               +G   +         F      ++  +  L++    +  + +       +  +   
Sbjct: 443 PDLGAGETAMWDEP----WFWRAARLVMGGLVILVLILAVVRPMLKKLINPTQELEDDAH 498

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
             +     +       L    + +      D      +L      +  +     +  ++ 
Sbjct: 499 SMLEDDEMMGDETIDLLSSQFDESSVGFGPDGSLQLPDL------HKDEDLLKAVRALVA 552

Query: 537 INEERFAKILRKWARSE 553
              E  +++++ W   +
Sbjct: 553 NEPELSSQVVKAWLNED 569


>gi|260574387|ref|ZP_05842391.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2]
 gi|259023283|gb|EEW26575.1| flagellar M-ring protein FliF [Rhodobacter sp. SW2]
          Length = 533

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 131/549 (23%), Positives = 228/549 (41%), Gaps = 18/549 (3%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +   F   ++L   R +I+    +   +  +      N+P    LY  L+      +  A
Sbjct: 1   MQNLFSLWSALDARRRIIVIGATIAMFLAVLGLSRMANTPSMALLYAGLDNRAAGEVVAA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + +   G SI V  +     R+ LA +GLP+  + +GYEL D ++ FG TS M
Sbjct: 61  LDQRGVAYEVK--GDSILVDVTQRDSLRMTLATEGLPTMGA-AGYELLDGLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   I AARVHI       FR+      +  +          
Sbjct: 118 FDAAYWRAKEGELARTILANPQIRAARVHIAQAPAQPFRRDVLATASVTVTTTTGSLPPL 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A+A++HL+AAAV  +   DV+V+D+ G L+ A +             Q    E+  N+ 
Sbjct: 178 QAKALKHLIAAAVAGMQPEDVSVIDTVGGLIMAADDNTLTGNG----GQDRAAELRTNVE 233

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + LAA +G       V  ++  + + I E  +DP  +V  S   ++    S  ++P   V
Sbjct: 234 RLLAARVGPGKSVVEVSVDVVTERESITERKFDPQGRVPISTDATEK--TSSATEPSGDV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P  +            T +  E +N+E++  S         + +LS+AV+V+  
Sbjct: 292 TVASNLPQGNA--AAGGNGQSQTSETRELTNFEVSETSRELLRVPGAVRKLSVAVLVDGL 349

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
           ++T   G  + Q + +  LA + ++V++A G++  RGD +T+ S+ F       +     
Sbjct: 350 QVTAADGTISWQPRPEEELAVLRELVASAVGLDETRGDVLTLKSLAFEPLAEAGTLAEAS 409

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            F DI      ++I   V  V  L++    +  +        A+    G +  L      
Sbjct: 410 MFADIGPIDLMSMIQLAVLAVVALVLGLFVIRPVLTNLPRRMAELPGPGAQLALPNGAGG 469

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                    +D   L +                +   +     RL  +IE  +    +IL
Sbjct: 470 ENRVLTGEIDDGFTLPTMGFGDDVAE-------DEADANDPMSRLRRLIEERQAESVEIL 522

Query: 547 RKWARSEIE 555
           R W  +E E
Sbjct: 523 RGWMETEEE 531


>gi|88858108|ref|ZP_01132750.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2]
 gi|88819725|gb|EAR29538.1| flagellar M-ring protein [Pseudoalteromonas tunicata D2]
          Length = 574

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 86/561 (15%), Positives = 219/561 (39%), Gaps = 27/561 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F  +   +   R + L   + + + + +    +   P    L   +   ++ +  
Sbjct: 30  EQKSGFLGALGGVDVLRQVTLIIALTICVAIAVFIIIWARQPDMRPL-GTMPTDELIQTL 88

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    +D+++   G++I VP +     ++ +A +GL   + NSG ++  +   FG++ 
Sbjct: 89  DFLDAQKVDYKL--EGNTIYVPETGYQNIKLMMAREGL-DQAPNSGTDILMQDMGFGVSQ 145

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++      + E ++ARTI+ +  +V A+V + +P    F +    P+A+V++       
Sbjct: 146 RLERERLKHSREQQLARTIEELQNVVRAKVLLALPKENVFARQEKSPSATVVLTLKRGRI 205

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240
              +  ++I  ++A+AV  L+   VTV D  G+LL +   +             +  + E
Sbjct: 206 LNGEEVDSIVDIIASAVQGLEPARVTVTDQNGRLLNSGSQDSLAARSRKEYEVERKREQE 265

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  +   +G+ N+ + V   ++  + +  +  Y+PD    RS    ++       
Sbjct: 266 YIEKIDSIMIPVVGLGNYTAQVDLVMDFSSVEETQKRYNPDLPAVRSEMTREENN--IGG 323

Query: 301 QPESAVTVEQNMPHVS------DRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                     N P V+        +     S  + ++KE   NYE++T           +
Sbjct: 324 LAVGIPGALSNQPPVNSAIPEKAGQGSASNSAPSRNQKEATRNYELDTTISHKRQQTGVI 383

Query: 355 ERLSIAVVVNKGRLTEVLG-RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
            R+S++V +N        G ++  + +    L+ I +++    G + +RGD + + ++ F
Sbjct: 384 RRISVSVAINYNSTAGADGAQATREPRSQQELSNIRRLLQGGIGFDMQRGDALEVVTVPF 443

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
           ++  + +   + +         F  +   ++  +  +++    +  + +     D     
Sbjct: 444 VQPYIEDVAELPMWEQP----WFFKIARLVMGALVIIVLIIAVVRPMLKKLIYPDDTLES 499

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
               ++ S   I  +    L    + +    + D      +L      +  +     +  
Sbjct: 500 YDDDAMSSGVDIGDSTLDMLNQTFDESAVGFSADGTLQLPDL------HGDEDLLKAVRA 553

Query: 534 MIEINEERFAKILRKWARSEI 554
           ++    E  +++++ W   + 
Sbjct: 554 LVANEPELSSQVVKAWLTEDD 574


>gi|167644977|ref|YP_001682640.1| flagellar MS-ring protein [Caulobacter sp. K31]
 gi|167347407|gb|ABZ70142.1| flagellar M-ring protein FliF [Caulobacter sp. K31]
          Length = 547

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 131/549 (23%), Positives = 228/549 (41%), Gaps = 7/549 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +F  +    G  R+  L  V    I +  A    ++    + L   ++  +    + A
Sbjct: 1   MDKFLSAIQRFGVGRLAALIGVAAGAIAVIAAVMMMMSKQPNELLLSNVDPKESAAATQA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A I +    +GS+I V    V  AR  +  +GL +S S  GYE+FD  ++ G T F+
Sbjct: 61  LDTAGIKYETKSDGSTIYVARDKVNAARQLIFTKGLVTSGS-VGYEIFDTGSALGQTDFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q++ R RAL+GE+ RTIQ   G+ AARVH+VMP    F +   +PTA+V +         
Sbjct: 120 QQLNRQRALQGELERTIQGWDGVRAARVHLVMPKRQLFEEDAEQPTAAVTVSMAREPSPD 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
              A+++LVA +V  +    V V+D  GK L+A   E      +     A +  I   + 
Sbjct: 180 MVRAVQNLVAGSVAGMKPDRVNVIDQHGKTLSAGNDESLAGKMAQDAKSATEARIAKTVK 239

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             +   LG    R  V A+L+++    +E  +DPD +V RS   +        +     V
Sbjct: 240 DMIDGVLGPGKARVNVTADLDLNRVTTQERKFDPDGQVIRSESTNAANNSETKNDDTGGV 299

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           T  QN+P  +        S   +D  E  +NYEI+  +  T  +   + ++++AV ++  
Sbjct: 300 TSTQNIPGQTPNGFQPLGS--KSDSNESVTNYEISESTKTTVQEPGAVRKVAVAVAIDGV 357

Query: 367 RLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                      A   +    +A+I ++V  A G +  RGD +++ ++ F + +    G  
Sbjct: 358 AAPPGKDGKPGAYTPRSAEEIAQIEQLVKTAVGFDQTRGDQVSVVNVRFPQPEDQGLGKA 417

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPP 483
            +             I   V  V  LL+    +   L+ L          + G  +    
Sbjct: 418 GL-LAGFDKNDIMRFIELGVLAVVALLILLFAVRPFLKSLMTPPTPLGLALNGPQVTRMV 476

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
            +S   T  ++ + + A  +         R   ++I   V   S  R+   +E + +   
Sbjct: 477 TLSDGSTQEVIVDQSGASMALAAPSDMDQRIDIAKIEGQVKASSVKRVAEFVEKHPDESV 536

Query: 544 KILRKWARS 552
            ILR W   
Sbjct: 537 AILRTWLHE 545


>gi|170725973|ref|YP_001759999.1| flagellar MS-ring protein [Shewanella woodyi ATCC 51908]
 gi|169811320|gb|ACA85904.1| flagellar M-ring protein FliF [Shewanella woodyi ATCC 51908]
          Length = 568

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 217/557 (38%), Gaps = 27/557 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
             S   +   R + +   + + + + +    +   P +  L  K+   D+ ++   L + 
Sbjct: 27  LGSFGGVDMLRQVTMVLALAICLAVAVFVMLWAQEPEFRPL-GKMATEDMIQVLDVLDKN 85

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + ++I   G  + VP     + ++ L+ +G+ S+S+++ Y    + + FG++  M++  
Sbjct: 86  KVAYKI--EGDVVKVPEEKYQEVKLMLSREGVDSASNSTDY--LSQDSGFGVSQRMEQAR 141

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAE 189
              + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I A       +  +
Sbjct: 142 LKHSQELNLARAIEELRSVTRAKVILAIPKENVFARNRSKPSATVVISARRAGLGQEEVD 201

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINK 247
           +I  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E    +  
Sbjct: 202 SIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKESEYRNKVES 261

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   LG +NF S V   ++    +     ++PD    RS    +++  S          
Sbjct: 262 ILMPILGPENFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVENSSNSGAI--GGIPG 319

Query: 308 VEQNMPHVSDRKVPLP--------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              N P +                     +  KE   N+E++T    T      + R+S+
Sbjct: 320 ALSNQPPMEANIPQNALDGEQSEANKNPGSSHKEATRNFELDTTISHTRQQIGVVRRVSV 379

Query: 360 AVVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           +V V+         G+     + D  +A I +++  A G +++RGD I + ++ F++  +
Sbjct: 380 SVAVDFKPGPAGEDGQVNRVPRTDQEMANIRRLLEGAVGFSTQRGDVIEVVTVPFMDQLI 439

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
             +   ++         F   I   +  +  L +    +  + +     D+       K 
Sbjct: 440 DEAPAPELWEQP----WFWRAIKLAMGGLVILALILFIVRPMLKKLIYPDSSNLPDEPKF 495

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                 I     +  +      L+  + +   +        + +        +  ++   
Sbjct: 496 GDELAEIEDQYASDTLG----MLNRPDAEYSYNDDGSILIPDLHKDDDMIKAIRALVANE 551

Query: 539 EERFAKILRKWARSEIE 555
            E   ++++ W +   +
Sbjct: 552 PELSTQVVKGWLQDNEQ 568


>gi|116619481|ref|YP_821637.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222643|gb|ABJ81352.1| flagellar M-ring protein FliF [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 570

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/574 (21%), Positives = 213/574 (37%), Gaps = 38/574 (6%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           K   +L   + + +A V +       +   +     +  L+  L   D   I   L E+ 
Sbjct: 3   KILANLSARQRITIAVVTVAVAAGLYSFVQWRKEGDFHPLFTGLSAEDAAGIVQKLKESG 62

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           +++R+ + G S+ VPS+ +   R+ +A  GLP S    G+ELFDKVN  G T F + I  
Sbjct: 63  VEYRLPEGGGSVLVPSNKLADLRLTMAGIGLPKSG-RIGFELFDKVN-LGATEFTEHINY 120

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSAE 189
            RALEGE+ RT+ +++ +  ARVH+  P    F +      ASV+  IR       ++  
Sbjct: 121 RRALEGELERTVMALAEVETARVHLTFPKDSVFLEAQQPAKASVLVRIRPGAKLAPQNVL 180

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-----EMERNILGKSLSIVQAIQHEIEMN 244
           AI HLV +AV  L  G V+VLD  G LL        +        +L     ++ E+   
Sbjct: 181 AITHLVGSAVEGLSPGAVSVLDMNGNLLNRPKAPGLQDGSEPSAATLDYRHQVETELLAK 240

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +N  L+  LG + FR  V  E +    +  E  +DP   V  + + ++D+    T     
Sbjct: 241 VNATLSPLLGPEKFRVGVSLECDFTGGEQSEETFDPARSVMVTSQRTEDSVGGTT--AAG 298

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
                  +P  + R          T +  E  +Y+ +     T   +  + ++S+AV+V+
Sbjct: 299 VPGTASTLPRPTSRPATGAN---KTVRTTENISYQSSRTVKKTHLPSGVVRKMSLAVLVD 355

Query: 365 KGRLTEVLGRS---ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +    E    S            L  I  +V+  TG +  RGD + I ++ F        
Sbjct: 356 QDVSWEKDKNSFKRVLVPPSPEKLKVIRDLVAGITGFSQERGDQLVIETLPFETTLQLEP 415

Query: 422 GT---------VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
                             +        +     +   ++V   GL  +RR      A   
Sbjct: 416 PVAAVPVPPAKPGSPLPGLPIPLDRKTLLIAAGVAAAMIVFGAGLFVMRRKRRKQTATVD 475

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL------------QSRIN 520
                ++ +      A  +  +       +     +                    + + 
Sbjct: 476 MASRPTLPAAASQPGAAPSTELLTQGQIEEQLESQLAQRDALQAKMDAQALTSLKLAPVI 535

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +  ++     L   I    E   ++LR W R E 
Sbjct: 536 TKKAEVLAKHLREKIAKEPEISVQVLRTWIREEE 569


>gi|153836097|ref|ZP_01988764.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|260362945|ref|ZP_05775814.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|260880232|ref|ZP_05892587.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|260895349|ref|ZP_05903845.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|149750851|gb|EDM61596.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|308085629|gb|EFO35324.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|308092563|gb|EFO42258.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|308112147|gb|EFO49687.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
          Length = 571

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + ++L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 17  DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 72  EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 130

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +        +  + ++
Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 190

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +L+  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 191 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +    + D                
Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 307

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 308 NSIDQIALGVPGSLSNQPPVTGE-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 366

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           D+  A+I+ +++ A GI++ RGD++++ S +F  
Sbjct: 367 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 420

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +       + +     +  ++  +  L + F  L  L       D    E+ 
Sbjct: 421 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 476

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529
                   P    + T         L+        +        +          +    
Sbjct: 477 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 536

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A+IL++W       
Sbjct: 537 HLQLIANEEPERVAEILKQWVNINEHS 563


>gi|296133049|ref|YP_003640296.1| flagellar M-ring protein FliF [Thermincola sp. JR]
 gi|296031627|gb|ADG82395.1| flagellar M-ring protein FliF [Thermincola potens JR]
          Length = 517

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 113/559 (20%), Positives = 210/559 (37%), Gaps = 54/559 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L    +      ++ R + +++    L  +            P Y  L+ +L+  D  +
Sbjct: 5   LLQLKTKIVGLWNNMTRNQKIVIIVSALFLVGTLAVLVRGATRPDYAPLFTQLDPQDAGK 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
               L E  I ++++D G++I VPS  V + RI L+++G P+     G+E FD+   FG 
Sbjct: 65  TVEWLKENKIPYQLADGGTTILVPSKDVDQTRISLSSEGYPTGGV-VGFEAFDQT-KFGE 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           T   +    +RAL+GE+ RTI+  S +  ARVHIV+P+   F +     TA+V ++    
Sbjct: 123 TDTDRRARFIRALQGELTRTIERFSEVDKARVHIVLPEPSLFLEEQKNATAAVWLQLKPT 182

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM------ERNILGKSLSIV 234
                   + +  LVA +V  L   +VTV+D  G +L+ +        ++ +    L I 
Sbjct: 183 KTLDENQVKGLVKLVANSVEGLSPENVTVVDMNGNILSESLDFSKEAQQQKLSMTQLEIQ 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           +  Q +++ ++   L   +G+      V AEL+ D  Q +      D  V    +  + +
Sbjct: 243 KTFQADLQRSLQSMLEKVVGIGKVVCRVRAELDFDQIQKKTEN-YGDKHVLSEQKTEQSS 301

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S T+ P++      N+P           S   +   +   NY  + +    T     +
Sbjct: 302 SSSNTATPQNTPGTAGNIPGYVAT---GGNSNSQSSSSDVVRNYVHDKEETVQTVAPGSV 358

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS++V+++K                      I + V  A GIN  RGD +++  M F 
Sbjct: 359 KRLSVSVMIDK-------------AINQQQQKAIEEAVVNAAGINRDRGDQVSVIGMPFN 405

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                             +    T+I         LL+    +  +R L      + GE+
Sbjct: 406 TEYQQEMAREMA-----QADRKQTIILFGSLGAVLLLIIVAVILRVRMLKKEQLEELGEI 460

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                                     L     +        +         +   ++  +
Sbjct: 461 AT----------------------TPLPLKAMEEIIEIEEKELTPEEKEKIRIKEQVEKV 498

Query: 535 IEINEERFAKILRKWARSE 553
              N    A++L+ W   E
Sbjct: 499 AGENPADVAQLLKTWLAEE 517


>gi|315497627|ref|YP_004086431.1| flagellar m-ring protein flif [Asticcacaulis excentricus CB 48]
 gi|315415639|gb|ADU12280.1| flagellar M-ring protein FliF [Asticcacaulis excentricus CB 48]
          Length = 561

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 144/562 (25%), Positives = 237/562 (42%), Gaps = 22/562 (3%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                  G +R+ ++  V +    +  A    +       LY  L++ + + I+ AL +A
Sbjct: 1   MDFLKQFGLSRLAVIIGVSIGVAAVLAAIALNMTGKPQALLYSNLDLKEASEITAALDQA 60

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I ++   +GS++ V    VG+ R+ LA++GLP++ S  GYELFDK  + G T F+Q + 
Sbjct: 61  GIKYQAKGDGSTLMVDRDTVGETRLMLASKGLPTAGS-VGYELFDKAPALGQTEFVQNLN 119

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN-PSVYKSAE 189
             RALEGE+ARTI ++ GI +ARVH+VMP    F++  A PTASV++   N     +   
Sbjct: 120 NQRALEGELARTIATLKGINSARVHLVMPKRELFQEEAAAPTASVVVGLSNTELSGEQVR 179

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEMERNILGKSLSIVQAIQHEIEMNINKA 248
           AIR+LVA AVPNL    VT++D   +LL A  E +  +          I+  +   +   
Sbjct: 180 AIRNLVAGAVPNLKANAVTLVDDKNRLLAAGGEDDNLLGAGGAERKTEIEETLRKRVKDI 239

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           +   +G    R  V A++++++    +  YDPD +V RS R       S  +     VT 
Sbjct: 240 VEGVVGPGAARVTVTADIDLNSLTREQTQYDPDGQVVRSTRTDTSTDSSTDNANNGTVTA 299

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
           + N+P  +            ++   E +NYEI+            +++L++AVVV+    
Sbjct: 300 QANIPGGAAAPGQGTTGN-QSETTGELTNYEISNTKTTEVIAPGAIKKLAVAVVVDGTWT 358

Query: 369 TEVLGR--SADQGKIDSYLAEINKIVSAATGINSR-------RGDTITITSMDFLENQL- 418
               G+       +    + +I ++V AA G   +       R D + +T++ F  +   
Sbjct: 359 PAADGKSPPTYAPRSAQDMQQIEELVRAAIGYTDQTATNPNGRKDELKVTNIRFARDAAG 418

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG------ 472
               T      D       T I  L+ LV  LLV F     L +  N             
Sbjct: 419 LGGTTASAGMFDFTKDDIVTAIQWLILLVVALLVLFFVARPLLKFVNNGAVPAPGGVPAL 478

Query: 473 --EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
               G   ++               +      +        SR   ++I   V   S  R
Sbjct: 479 AGAGGAVQMVMGADGVPVAVPAGALDYQGVPGTGLALSPVDSRIDIAKIEGQVKASSVKR 538

Query: 531 LLHMIEINEERFAKILRKWARS 552
           +   +E + E    ILR W   
Sbjct: 539 VSEFVERHPEESISILRSWLHD 560


>gi|29423531|gb|AAO73593.1| lateral flagellar FliF-like M-ring protein [Vibrio
           parahaemolyticus]
          Length = 584

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + ++L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 30  DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 85  EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +        +  + ++
Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 203

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +L+  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 204 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +    + D                
Sbjct: 264 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 320

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 321 NSIDQIALGVPGSLSNQPPVTGD-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 379

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           D+  A+I+ +++ A GI++ RGD++++ S +F  
Sbjct: 380 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 433

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +       + +     +  ++  +  L + F  L  L       D    E+ 
Sbjct: 434 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 489

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529
                   P    + T         L+        +        +          +    
Sbjct: 490 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 549

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A+IL++W       
Sbjct: 550 HLQLIANEEPERVAEILKQWVNINEHS 576


>gi|315179670|gb|ADT86584.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Vibrio furnissii NCTC 11218]
          Length = 579

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 99/526 (18%), Positives = 203/526 (38%), Gaps = 26/526 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  DV  I   L   +I +R+ +    + VP   V + R+ LAA+G
Sbjct: 61  WSSSQSFRPLYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI +++ +  ARVH+ +P  
Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179

Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +      ++ +   ++A      +  EAI +LV  +V  +    V+V+D  G+LL+
Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239

Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           A+        +  K L   + ++ ++       L   +G  NFR  V A+++    +  +
Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            + D                 S             N P V+  K     S  +  + E  
Sbjct: 300 EILD---NTPVVQNEHTVQNNSIDQIALGIPGSLSNQPPVTGEKPTQD-SQNSNARSEIN 355

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y + +    T +   ++++L+++V++N        G        D    EI+ ++  A
Sbjct: 356 RQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNGTG------WSDQEKTEISAMLMDA 409

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI++ RGD++++ S +F   ++    ++       + +     +  ++  +  + + F 
Sbjct: 410 VGISAARGDSLSLMSFNFTPIEIEAPPSIPWWQDPTVQQ----PLRYVIGGLLGMAMIFF 465

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            L  L       D +  E+        P   +  T      ++       +     S  L
Sbjct: 466 VLRPLIMHLTGADRRSQELEFAPPPEEPYYENLQTREEREREDALNRRLEEKGIKASSGL 525

Query: 516 Q-----SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                         +     L  +     ER A++L++W       
Sbjct: 526 DVSSDMLPPPGSPLEIQLKHLQLIANEEPERVAEVLKQWVNVNEHS 571


>gi|328469325|gb|EGF40271.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329]
          Length = 571

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + ++L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 17  DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 71

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 72  EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 130

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +        +  + ++
Sbjct: 131 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 190

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +L+  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 191 PGEDLKSEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 250

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +    + D                
Sbjct: 251 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 307

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 308 NSIDQIALGVPGSLSNQPPVTGD-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 366

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           D+  A+I+ +++ A GI++ RGD++++ S +F  
Sbjct: 367 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 420

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +       + +     +  ++  +  L + F  L  L       D    E+ 
Sbjct: 421 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 476

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529
                   P    + T         L+        +        +          +    
Sbjct: 477 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 536

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A+IL++W       
Sbjct: 537 HLQLIANEEPERVAEILKQWVNINEHS 563


>gi|167623379|ref|YP_001673673.1| flagellar MS-ring protein [Shewanella halifaxensis HAW-EB4]
 gi|167353401|gb|ABZ76014.1| flagellar M-ring protein FliF [Shewanella halifaxensis HAW-EB4]
          Length = 566

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 98/555 (17%), Positives = 216/555 (38%), Gaps = 25/555 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
              S   +   R + +   + + + L +    +   P Y  L  ++  +++ ++   L  
Sbjct: 26  LMGSLGGVDMLRQVTMILALAICLALAVFVMIWAQEPEYRPL-GQMSTAEMVQVLDVLDN 84

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + + I   G  + VP       R+ L+ +GL ++ +N+ +   +K + FG++  M++ 
Sbjct: 85  NQVKYEIQ--GDVVKVPEDKFQDVRMLLSREGLDNTDANNDF--LNKDSGFGVSQRMEQA 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSA 188
               + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V++    +    +  
Sbjct: 141 RLKHSQEQNLARIIEELKSVTRAKVILALPKENVFARNRSKPSATVVVSTRRSGLSQEEV 200

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246
           ++I  +VA+AV NL+   VTV D+ G+LL +   +    I  + L IVQ  + E    + 
Sbjct: 201 DSIVDIVASAVHNLEPNKVTVTDANGRLLNSGTQDGSSAIARRELEIVQQKESEYRNKVE 260

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   LG +NF S V   ++    +     Y+PD    RS  + +    S         
Sbjct: 261 SILMPILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPSLRSEMVVE--NNSNGGTSGGIP 318

Query: 307 TVEQNMPHVSDRKVPLPRS------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
               N P ++        +         +  KE   N+E++T    T      L R+S++
Sbjct: 319 GALSNQPPMASDIPQEVNAEETVTRNSGSTHKEATRNFELDTTISHTRQQIGTLRRVSVS 378

Query: 361 VVVNKGRL-TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           V V+         G      + +  LA I +++  A G N++RGD I + ++ F++  + 
Sbjct: 379 VAVDFKNAPMAEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDVIEVVTVPFMDQLIE 438

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +   ++         F  V+  ++  +  L++    +  + +     D+    V     
Sbjct: 439 AAPAPELWEQP----WFWRVLRLVLGALVILVLILAVVRPMLKKLVYPDS----VNMPDE 490

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                  + +      +    L     +            N +        +  ++    
Sbjct: 491 PQRGGELAEIEDQYAADTLGMLQRPEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEP 550

Query: 540 ERFAKILRKWARSEI 554
           E   ++++ W   + 
Sbjct: 551 ELSTQVVKNWLLEDD 565


>gi|28901391|ref|NP_801046.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809938|dbj|BAC62879.1| putative flagellar M-ring protein [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 584

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 212/567 (37%), Gaps = 32/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + ++L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 30  DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    + +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 85  EIVSVLESEGVSYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +        +  + ++
Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSVANARVHLAIPRQTLFVRQNGENPSASVMLELK 203

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +L+  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 204 PGEDLKPEQVEAIINLIVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  NFR  V A+++    +    + D                
Sbjct: 264 NVEKQIIQRAADMLTPIVGPSNFRVQVAADMDFSQVEETREILD---NAPVVRNEHTIQN 320

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 321 NSIDQIALGVPGSLSNQPPVTGE-AATNDSQNTNARSEVNRQYAVGSSVRRTQYQQGQIE 379

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           D+  A+I+ +++ A GI++ RGD++++ S +F  
Sbjct: 380 KLSVSVLLNSKASPDG------VAWSDADKAQISTMITDAVGISAARGDSLSLMSFNFTP 433

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +       + +     +  ++  +  L + F  L  L       D    E+ 
Sbjct: 434 IDIDAPTALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPVPELN 489

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALD------SSNQDIFSHSRNLQSRINSYVSKQSDL 529
                   P    + T         L+        +        +          +    
Sbjct: 490 FAEPPQEEPDYDNLQTREEREHEEVLNRRLSEKGISASTGLDVNSDMLPPAGSPLEIQLK 549

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A+IL++W       
Sbjct: 550 HLQLIANEEPERVAEILKQWVNINEHS 576


>gi|255264100|ref|ZP_05343442.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62]
 gi|255106435|gb|EET49109.1| flagellar M-ring protein FliF [Thalassiobium sp. R2A62]
          Length = 531

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 123/545 (22%), Positives = 220/545 (40%), Gaps = 23/545 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +        SLG    +I     +   +  +      ++P Y  LY  LE S    +  +
Sbjct: 1   MQNIISVWKSLGARNQIISGLASVAVFLAVLFMTRVASTPTYALLYSGLESSASGEVIAS 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L   +  + I   G SI V S+   + R+ LA+ GLP   +  GYEL D +  FG TS M
Sbjct: 61  LEAQSAAYEIR--GDSIFVDSAKRDQLRMTLASAGLPKP-TVQGYELLDTLTGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   I  ARVHI       F++  A   +  +   +     +
Sbjct: 118 FDAAYWRAKEGELARTIVATPAIRTARVHISNGTSRPFQRNQATTASVTVNTGVAGLTTQ 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
             +A+++LVA+AV  +   DV ++D    L++   +  +   ++          I+ NI 
Sbjct: 178 QIKALQYLVASAVAQMSPEDVAIIDDQRGLVSGAGLASDPTTRTSE-----TENIKRNIE 232

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G  N    +  +   D + I E   DP+S+V  S    ++   S T Q   +V
Sbjct: 233 RLLEARVGFGNAVVELNVQRTTDIETILERRVDPNSRVAISTET-EERSTSSTDQNGGSV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S     +  E+ N+E++      T    +++R+++AV+V+  
Sbjct: 292 TVASNLPDGDAAADSG-TSNSQNSESRERVNFEMSETQREVTRGPGQVQRITVAVLVDGV 350

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              +  G +  + + +  LA++ ++V++A G +  RGD ITI S+ F E           
Sbjct: 351 NGLDSDGNTTIEPRSEEELADLRELVASAIGFDENRGDKITIRSLAF-EPLPVEGTVAGS 409

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S     S +  ++I   V     +++    +  +            +  G  +      S
Sbjct: 410 SKNLFDSLNLMSLIQIAVAASVAIVLGLFVVRPVLMSGRAYRPALIDDSGPLLDGEIDTS 469

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
             ++   +        +                +  +     +RL  +IE  +E    IL
Sbjct: 470 LGLSATEIGEMKNVDGAVQVA------------DPSMPNDPVVRLRALIEERQEETVDIL 517

Query: 547 RKWAR 551
           R W  
Sbjct: 518 RDWIA 522


>gi|225159031|ref|ZP_03725341.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2]
 gi|224802410|gb|EEG20672.1| flagellar M-ring protein FliF [Opitutaceae bacterium TAV2]
          Length = 532

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 123/553 (22%), Positives = 204/553 (36%), Gaps = 39/553 (7%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                    LG  + + L    L  I    A   +   P Y  LY +L   D   I  AL
Sbjct: 6   QSLVALWKQLGLNQRISLVVAALAVIGSVAALVIWSRQPDYQLLYGRLADKDAASIISAL 65

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               + +R S  G S+ VP++ V + R+ LAA+GLP      G+E+FDK   FGL+ F+Q
Sbjct: 66  QAQGVPYRASAGGGSVYVPANQVHRLRMDLAAKGLP-GGEGVGFEIFDKGQ-FGLSDFVQ 123

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIRA-INPSVY 185
                RAL+GE+ARTI  + G+  ARV IV P+          +PTASV +         
Sbjct: 124 RTNYTRALQGELARTISQLDGVARARVMIVQPENRLLLIDQGVKPTASVFVELTGPRLDT 183

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHEIE 242
           ++  +IR+LVA AV  L    V V+D  G++L++   +          +   Q ++    
Sbjct: 184 EAVNSIRNLVANAVQGLKPAQVAVVDQKGRVLSSELQDDPTLADASSQMRYRQQVEEYFA 243

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   L   +G  N    V AE++ +     E  YDPD +V R+   ++D   S  ++ 
Sbjct: 244 KKVESLLLPVVGAGNAVVRVSAEIDTEAATRVEERYDPDGQVVRTQTSTEDVTNSSEARS 303

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              V V  N           P    +  +K    +YEIN     TT     +  L+ AV 
Sbjct: 304 GGVVGVTANATTPPPADQARPTVTNDQTRKNRTLSYEINRTLTNTTRSPGTILGLTAAVF 363

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITITSMDFLENQL 418
           +           +A   + ++ +A + ++V  A G+    G    + +T+  + F    +
Sbjct: 364 IAPRPPAAG--GAAPGPRTEAEIAALRQVVVNALGLRPSPGRRIEELVTLQEVPFQAAGV 421

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
            +    Q+     +          +   V  L+         R+                
Sbjct: 422 DDR-IEQIRTETRVQGWIEAASRYVAVAVAVLIFFIFWRMLKRQH--------PAPVPVE 472

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            L  PP                  ++++ + +                    L  +I+  
Sbjct: 473 FLDQPPSGDGTAGQPGAAATGLGGAASRPVLTPEM-----------------LNELIKQK 515

Query: 539 EERFAKILRKWAR 551
                  LR W  
Sbjct: 516 PANVGAALRDWMA 528


>gi|153831728|ref|ZP_01984395.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
 gi|148872238|gb|EDL71055.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
          Length = 556

 Score =  316 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 105/566 (18%), Positives = 218/566 (38%), Gaps = 31/566 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + +++ Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 3   DVTNKIKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 57

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 58  EIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 116

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +      ++ +   ++
Sbjct: 117 TSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELK 176

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 177 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 236

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           +++ +I       L   +G  NFR  V A++N    +  + + D                
Sbjct: 237 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NAPVVRNEHTIQN 293

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 294 NSVDQIALGIPGSLSNQPPVTGETPTND-SQNTNARSEVNRQYAVGSSVRRTQYQQGQVE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           ++  ++I+ ++  A GI++ RGD++++ S +F  
Sbjct: 353 KLSVSVLLNSQAAPDG------VAWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTP 406

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            ++     +       + +     +  ++  V  L + F  L  L       D    E+ 
Sbjct: 407 IEIDAPPALPWWQDPTVQQ----PLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPAQELE 462

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530
                  P   +  T      + +     ++   + S  L              +     
Sbjct: 463 FAEPQEEPQYDNLQTREEREREELLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKH 522

Query: 531 LLHMIEINEERFAKILRKWARSEIED 556
           L  +     ER A+IL++W       
Sbjct: 523 LQLIANEEPERVAEILKQWVNINEHS 548


>gi|262173382|ref|ZP_06041059.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
 gi|261890740|gb|EEY36727.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
          Length = 585

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/570 (17%), Positives = 220/570 (38%), Gaps = 32/570 (5%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  ++++L Q +         R L+L++V+   +   +    + +  ++  LY + E  D
Sbjct: 28  MDKLINKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFD 82

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  I   L    I +R+ +    + V    V + R+ LA +G+  +   +G++   + +S
Sbjct: 83  IGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSS 141

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
            G + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F +      ++ ++  
Sbjct: 142 LGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLE 201

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233
            +       +  EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L  
Sbjct: 202 LKPGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEY 261

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            + ++ +I       L   +G  NFR  V A+++    +  E + D              
Sbjct: 262 QKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD---DTPVVRDEHTI 318

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
              S             N P ++ +        S     + E    Y + +    T +  
Sbjct: 319 QNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQ 378

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            ++++LS++V++N                  +   +I+ +V  A G++  RGD++++ S 
Sbjct: 379 GQIKKLSVSVLLNSQAAPNGK------AWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSF 432

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
           +F    +  + T+       + +     +  ++  +  + + F  L  L       D + 
Sbjct: 433 NFTPIDIEAAPTIPWWQDPTVQQ----PMRYVIGGMLGIAMIFFVLRPLIMHLTGADRRV 488

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----RINSYVSKQS 527
            E+           +          + +      + I + S    +     +     +  
Sbjct: 489 QELEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLPGSPLEIQ 548

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557
              L  +     ER A++L++W      ++
Sbjct: 549 LKHLQLIANEEPERVAEVLKQWVNLNEHNK 578


>gi|156976202|ref|YP_001447108.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527796|gb|ABU72881.1| hypothetical protein VIBHAR_04973 [Vibrio harveyi ATCC BAA-1116]
          Length = 583

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/566 (18%), Positives = 218/566 (38%), Gaps = 31/566 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + +++ Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 30  DVTNKIKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 85  EIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +      ++ +   ++
Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELK 203

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 204 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           +++ +I       L   +G  NFR  V A++N    +  + + D                
Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NAPVVRNEHTIQN 320

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 321 NSVDQIALGIPGSLSNQPPVTGETPTND-SQNTNARSEVNRQYAVGSSVRRTQYQQGQVE 379

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           ++  ++I+ ++  A GI++ RGD++++ S +F  
Sbjct: 380 KLSVSVLLNSQAAPDG------VAWSEADKSQISTMIMDAVGISNARGDSLSLMSFNFTP 433

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            ++     +       + +     +  ++  V  L + F  L  L       D    E+ 
Sbjct: 434 IEIDAPPALPWWQDPTVQQ----PLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPAQELE 489

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530
                  P   +  T      + +     ++   + S  L              +     
Sbjct: 490 FAEPQEEPQYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKH 549

Query: 531 LLHMIEINEERFAKILRKWARSEIED 556
           L  +     ER A+IL++W       
Sbjct: 550 LQLIANEEPERVAEILKQWVNINEHS 575


>gi|315126013|ref|YP_004068016.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913]
 gi|315014527|gb|ADT67865.1| flagellar MS-ring protein FliF [Pseudoalteromonas sp. SM9913]
          Length = 575

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 221/574 (38%), Gaps = 29/574 (5%)

Query: 2   AILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
            + ++++             R +   +++   +   +    + ++ +Y  LY   E  D 
Sbjct: 15  NLKERVVNLSNKLNFGSSGDRSVATIALLATLVAATIVLILWTSAKNYVPLYGNQESYDK 74

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L +  I FRI  +  +I VP   +  ARI LAA+G+  +S   G E      S 
Sbjct: 75  ANILEILDKEQITFRIDTDSGNILVPQEKLADARITLAARGI-KASMPEGIENISDKVSM 133

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179
           G + F++ +    ALEGE+ARTI ++ GI  ARVH+ +P    F  +   +  ASVM+  
Sbjct: 134 GTSQFIESMQYQHALEGELARTIINMQGIRNARVHLAVPKRSLFVGRTEQKTAASVMVDL 193

Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSI 233
                   +  EAI  L+  +VP LD   V+V+D  GKLL+ +  +         K L+ 
Sbjct: 194 APGHELKPEQVEAIIALIIGSVPGLDSRSVSVVDQRGKLLSGDLFDTTPVGKETDKKLAF 253

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           ++ ++  IE   +  L   LG  NFR  V ++++    +    + DP +      +    
Sbjct: 254 IEKVERNIEQRASIMLLPILGEGNFRIQVSSDVDFSVVEETREMVDPQN---VLTQEFIK 310

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
           +  +             N P V + +     +   + + E +  +E       T  +  +
Sbjct: 311 SDSTLDQLAAGIPGSLANEPPVPNEQAEDENNERTSQRSESKRQFENGRSVTHTQFEVGR 370

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++ +S++V++N+       G        +  LA + ++V  ATG N  RGD   ITS  F
Sbjct: 371 IKNMSLSVLINEQVAGTADG------WSEEKLASLGEMVKKATGFNDARGDQFNITSFAF 424

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
           +E ++   G     +              +V  + +LL+   G+  L        +    
Sbjct: 425 VEQKILAPGEGLEWWQ---MPELKEYARYIVGTLISLLLILFGVRPLVNHLIKGKSNDAN 481

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN------SYVSKQS 527
               +  +     SA      P D      S  +  +         N          ++ 
Sbjct: 482 NAMATTDNEVKSVSATERQSSPLDEAINAKSQIENLTAKEGASEHQNMSLPQIGNDFEEQ 541

Query: 528 DLRLLHMIEINEERFAKILRKWARS--EIEDRYT 559
              +  +     ER   +++ W     EIE R  
Sbjct: 542 IAHMQLLANKETERVTSVIKYWVEQGVEIESRKA 575


>gi|117620247|ref|YP_855904.1| flagellar MS-ring protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561654|gb|ABK38602.1| flagellar M-ring protein FliF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 560

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/561 (15%), Positives = 208/561 (37%), Gaps = 29/561 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q        ++    R + L   + + + + +    +   P    L       ++ +  
Sbjct: 13  EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYTTQELVKTL 71

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP--SSSSNSGYELFDKVNSFGL 122
             L +  I +++  +G S+ V +      R+ L   GL   + +++ G ++  K +SFG+
Sbjct: 72  DYLDQQKIPYQV--DGKSVLVSAENYSSIRLALTRAGLANATDTTSDGEDILLKDSSFGV 129

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           +  M+      + E ++A  I+    +  A+V + +P    F +   +P+A+V++     
Sbjct: 130 SQRMESERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGN 189

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239
                  ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + 
Sbjct: 190 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEL 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E +  I+  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S  
Sbjct: 250 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEE--NSAN 307

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPR--------SLENTDKKEEQSNYEINTKSIATTHDN 351
                      N P  +                S     +KE   N+E++T         
Sbjct: 308 GSNGGVPGALSNQPPAASNIPQQATGPNAETTASSSGRSRKEATRNFELDTTVSHIRRQM 367

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + R++++V V+    T   G+   + +    L  + +++S   G +  RGDT+ + ++
Sbjct: 368 GGIRRMTVSVAVDYKASTAADGKVTREPRTQPELDTLRRLLSGGLGFDVTRGDTLEVVAI 427

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F   +L +     +         F   +     ++  +++    +  + +     DAK 
Sbjct: 428 PFNRPELESVAEAPLYEQP----WFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKP 483

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                    +       ++      ++  +                  + +  +     +
Sbjct: 484 EGELDFDNHTVLGGDDELSLLAAQAESEPVFGVRDGHLKLP-------DLHRDEDLLKAV 536

Query: 532 LHMIEINEERFAKILRKWARS 552
             ++    +  A+++++W  +
Sbjct: 537 RALVANEPDLAAQVIKEWVAN 557


>gi|260886631|ref|ZP_05897894.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|330839537|ref|YP_004414117.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|260863774|gb|EEX78274.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
 gi|329747301|gb|AEC00658.1| flagellar M-ring protein FliF [Selenomonas sputigena ATCC 35185]
          Length = 529

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/565 (21%), Positives = 234/565 (41%), Gaps = 49/565 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRI-LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           + +   ++ +   +  + +  +I+ +  LV I +   +  +   P    L+  +E  D  
Sbjct: 1   MAEWKERYLELWNNYSKRQRYMIIGAAALVFIAIVAGSIIYGGKPDMVPLFTNMEAKDAG 60

Query: 62  RISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
            ++  L E  +++ I + G  ++I VP+  V   R+ LAA+GLP    N G+ELFD  + 
Sbjct: 61  EVAAKLKENKVNYEIQEGGQGTTILVPAKSVDSTRLDLAAEGLPR--GNKGFELFD-DSK 117

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G+T F  ++  ++AL+GE+ RTI+ I  +  ARVHIV+P+   ++K     TAS+M++ 
Sbjct: 118 LGVTEFQNKVNYLQALQGELTRTIEQIDAVEKARVHIVLPEDSLYKKNEKPATASIMLKL 177

Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLS 232
                   K  + I +L A +V  L   ++T++D +GK+L   +              + 
Sbjct: 178 KANMQLSKKEVKGIVNLAAHSVQGLTPENITIVDESGKILNDPDENGDDGVGQKTLTQME 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIR 289
           + + +Q  ++ N+   L A LG       +  EL+ D +     +Y P   +S + RS +
Sbjct: 238 MTKKVQDNLQKNVQSLLDASLGEGKSFVRISVELDFDQKMTDSQIYTPVVDESGIVRSQQ 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            + ++    ++QP      + N+P           S    ++KE  +NYE+N +      
Sbjct: 298 TTSESYAGTSTQPGGPAGTQSNVP---GYVEQNNNSQAQYERKENTTNYEVNEEKRKVVA 354

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               + RL++AV+VN                  +    I + V +A GIN  RGDT+++ 
Sbjct: 355 SPGSIRRLTVAVLVNDDV-------------TQAQQESILRSVRSAAGINPDRGDTVSVE 401

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F           + +  D L R F   + A + ++  ++ + L     +RL      
Sbjct: 402 PLPFSTEARDKKLADEQAERDRLDREFYLQLAAFLLVIALIVGSILMYRRKKRLEQEAIE 461

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++               +A        +    +   + +                     
Sbjct: 462 EQRRQEELERQRLAEERAAQIEAGEVTEEELTEEEQRQLTE-----------------MQ 504

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +  MI    E  A ++++W   + 
Sbjct: 505 AIEEMIMHTPEDAAMLVKQWLAGDD 529


>gi|269960163|ref|ZP_06174539.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
 gi|269835134|gb|EEZ89217.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
          Length = 583

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/566 (18%), Positives = 217/566 (38%), Gaps = 31/566 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            + ++L Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 30  DVTNKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 85  EIVSVLETEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +      ++ +   ++
Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNAVANARVHLAIPRQTLFVRQNTENPSASVMLELK 203

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 204 PGEDLKPEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVASAEAGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           +++ +I       L   +G  NFR  V A++N    +  + + D                
Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NAPVVRNEHTIQN 320

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S     + E    Y + +    T +   ++E
Sbjct: 321 NSVDQIALGIPGSLSNQPPVTGETPTND-SQNTNARSEINRQYAVGSSVRRTQYQQGQIE 379

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           ++   +I+ ++  A GI++ RGD++++ S +F  
Sbjct: 380 KLSVSVLLNSQAAPDG------VAWSEADKTQISTMIMDAVGISNTRGDSLSLMSFNFTP 433

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            ++     +       + +     +  ++  +  L + F  L  L       D    E+ 
Sbjct: 434 IEIDAPPALPWWQDPTVQQ----PLRYVIGGMLGLAMIFFVLRPLIMHLTGADKPAPELE 489

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530
                  P   +  T      + +     ++   + S  L              +     
Sbjct: 490 FAEPQVEPEYDNLQTREEREREEVLNRKLSEKGIAVSSGLDVNSDMLPPAGSPLEIQLKH 549

Query: 531 LLHMIEINEERFAKILRKWARSEIED 556
           L  +     ER A+IL++W       
Sbjct: 550 LQLIANEEPERVAEILKQWVNINEHS 575


>gi|223038711|ref|ZP_03609004.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267]
 gi|222880113|gb|EEF15201.1| flagellar M-ring protein FliF [Campylobacter rectus RM3267]
          Length = 564

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/576 (19%), Positives = 227/576 (39%), Gaps = 28/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56
           M     + Q  +   +L   + L+ A  I++ +   +    + +S      Y  L+    
Sbjct: 1   MDFKTAVQQIGQVYHNLSLRQRLVAAGSIVLVVGFLVFLSIYKSSNEGYDGYSVLFENTS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D   I   L +  + ++I + G +I VP+S V + RI +A+ G+       G+E+FDK
Sbjct: 61  AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDG-KVGFEIFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG T   Q++   RALEGE+ARTI+S++ I  A V I +P    F +    P+AS++
Sbjct: 119 -QEFGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETLFTERATPPSASIV 177

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS 232
           +          K    I++LVAAAV NL    V ++   G  L   +   + + + + + 
Sbjct: 178 LNLKDGQSLNLKQIAGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237

Query: 233 IVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             +  +H +E  I   L+  +G  D   + V  + +   +  +   +DP+S       + 
Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGADKVVAKVTIDFDFARKDSQSESFDPNSVARSEQNIE 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  Q S+ ++ +       N+  V        +  E   K    +NYEI+ K        
Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGL--QDNKMKELYSKSSSTTNYEISKKVERVKDQF 355

Query: 352 YKLERLSIAVVVNKGRLTEVLG------RSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            K++RLS AVVV+     +           A     ++ LA I+ ++  A   +  RGD 
Sbjct: 356 AKIKRLSAAVVVDGKYENKKDENGNPTKEIAYVPLDENQLARIDALIRQAICFDQNRGDE 415

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           IT+++ +F         +   SF ++   +    +  L +L   +L+       +     
Sbjct: 416 ITVSNFEFQRQDGQTPASKVNSFFEL---YVVPFLPILKYLFAAVLLYIFYKKVIVPFMA 472

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                  E   +  L         +   +     A     + +       +  +      
Sbjct: 473 KMLEDIKEEEPE--LPDSDDQLGDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLR---YD 527

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561
               ++  + +   +  A +L+   +++ +    + 
Sbjct: 528 VLLEKMKLIAQERSDEIAVLLQDLVKNDSDFSNRKD 563


>gi|258622516|ref|ZP_05717538.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|258585216|gb|EEW09943.1| flagellar M-ring protein [Vibrio mimicus VM573]
          Length = 585

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/570 (17%), Positives = 220/570 (38%), Gaps = 32/570 (5%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  ++D+L Q +         R L+L++V+   +   +    + +  ++  LY + E  D
Sbjct: 28  MDKLIDKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFD 82

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  I   L    I +R+ +    + V    V + R+ LA +G+  +   +G++   + +S
Sbjct: 83  IGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSS 141

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
            G + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F +      ++ ++  
Sbjct: 142 LGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLE 201

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233
            +       +  EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L  
Sbjct: 202 LKPGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGEVNAKYLEY 261

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            + ++ +I       L   +G  NFR  V A+++    +  E + D              
Sbjct: 262 QKNVEKQIIQRAADMLTPIVGPTNFRIQVAADMDFSQVEETEEILD---DTPVVRDEHTI 318

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
              S             N P ++ +        S     + E    Y + +    T +  
Sbjct: 319 QNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQ 378

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            ++++LS++V++N                  +   +I+ +V  A G++  RGD++++ S 
Sbjct: 379 GQIKKLSVSVLLNSQAAPNGK------AWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSF 432

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
           +F    +  + T+       + +     +  ++  +  + + F  L  L       D + 
Sbjct: 433 NFTPIDIEAAPTIPWWQDPTVQQ----PMRYVIGGMLGIAMIFFVLRPLIMHLTGADRRV 488

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS----RINSYVSKQS 527
            E+           +          + +      + I + S    +     +     +  
Sbjct: 489 QELEFAEQEELIDENLQTREESEREEALNRRLLEKGIAASSGLDIASDMLPLPGSPLEIQ 548

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557
              L  +     ER A++L++W      ++
Sbjct: 549 LKHLQLIANEEPERVAEVLKQWVNLNEHNK 578


>gi|332296504|ref|YP_004438427.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
 gi|332179607|gb|AEE15296.1| flagellar M-ring protein FliF [Thermodesulfobium narugense DSM
           14796]
          Length = 515

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 141/559 (25%), Positives = 238/559 (42%), Gaps = 50/559 (8%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  +            +L  TR  +L S + +  +LF+    F+  P    L+  L  SD
Sbjct: 1   MDRVRALFFSLRDRFLALSPTRRFLLLSGVSLVFILFVFGSLFLFKPQMAPLFTHLSSSD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L E  I + + D+G++I VP   V + R+ LAAQGLP   S  G+E+FDK N 
Sbjct: 61  GAAIVAKLKEQKIPYELKDSGTTILVPKDKVYELRLSLAAQGLP-EGSGVGFEIFDKNNL 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
           F  T F Q +  VRAL+GE+ARTI  I+G+  ARVHIV+P  G F       +ASVM+  
Sbjct: 120 F-TTDFTQRVDYVRALQGELARTISQINGVEGARVHIVLPKTGVFVSQDIPASASVMLNL 178

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQ 235
           +       K  EAI  LV+ AV  L   +VT++D+ G+LL+A  N  +  +  +   I +
Sbjct: 179 KPGQSISEKETEAIAFLVSRAVEGLKPENVTIMDTRGELLSADLNFNKSGLSQREFDIKR 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             + E++  I   L   LG       V AELN+ + ++++I Y P       +  SK   
Sbjct: 239 KYESEVQRKIQTMLDTMLGPGKSVVRVSAELNLASSEVKKITYSPVVGQNGIVISSKVTT 298

Query: 296 RSETSQPESAVTVEQNMPHV-SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            +  SQ  +  T    +P      + P P S  ++ K EE +NY++N +     + +  +
Sbjct: 299 DTSKSQNTTPQTPSATVPQGIPSYQTPAPTSSSSSRKTEEITNYDVNKQEEMIKNPSGDI 358

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RL+++V+V+                    L  +   VS A GI  +RGD++ + +M F 
Sbjct: 359 KRLTVSVIVDGTP-------------QTVNLQALTAAVSNAAGILPQRGDSVDVQAMPFD 405

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                           +        I ++   V  ++   + +  LRR        + + 
Sbjct: 406 RTYQQKE------LQAMQQAQLMDTIKSIAMWVAIVIAAIIAIIFLRRTIASLKKSQEQR 459

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
           G + + +       +    +  + +A                        K++   +  +
Sbjct: 460 GAQILDATVGAEGIIHEKPLTPEELA-----------------------RKKARDEVERL 496

Query: 535 IEINEERFAKILRKWARSE 553
            +      A +++ W R E
Sbjct: 497 AKEKPSEVANLIKTWLREE 515


>gi|254474533|ref|ZP_05087919.1| flagellar M-ring protein FliF [Ruegeria sp. R11]
 gi|214028776|gb|EEB69611.1| flagellar M-ring protein FliF [Ruegeria sp. R11]
          Length = 558

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 137/568 (24%), Positives = 226/568 (39%), Gaps = 31/568 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q       L   + LI     ++ I+  +A     N+P    LY  LE      +  A
Sbjct: 1   MQQIKNVWAGLDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +    + +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS M
Sbjct: 61  LDQRGTQYEVR--GGSIYVPATERDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   +  ARVHI       F++      +  ++   +P   +
Sbjct: 118 FDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRTAEPTASVSVVPMGSPITPQ 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A AIR LV++AV  L + +V V+D+ G L+ + E        +    QA    I   + 
Sbjct: 178 QANAIRFLVSSAVTGLSVDNVAVIDANGALIGSPEAAAAAGAGTDDRSQA----IRERVM 233

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G  N    V  E   DT+ IRE   DP+S+V  S  + + A  S+       V
Sbjct: 234 RLVEARVGHGNAVVEVSVETVTDTESIREKRVDPESRVAISTDVEERADSSQNQ--SGEV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S  +T    E+ NYEI+            ++RL++AV++N  
Sbjct: 292 TVASNIPDGDA--ASGDGSKASTSATRERVNYEISETEKEIIRGPGAIKRLTVAVLLNGV 349

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
             T   G +  + + +  L  + +++SAA G ++ RGD IT+ SM+           V  
Sbjct: 350 ATTNAAGETVMEPRSEEELGALRELISAAVGFSADRGDVITLKSMEM-PTIEPQGTVVSS 408

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI- 485
           S +D +     ++I      + TL++    +  +        A     G      P    
Sbjct: 409 SILDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPDGDDMGGLPELPA 468

Query: 486 ------------------SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                                +  G    + +        +                +  
Sbjct: 469 LGGGDFMANPNLGANLALDGEIQNGDGGFEPMGGMGMGSGLDELGGMGDLPALGGGQENP 528

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIE 555
             RL  MI   +E   +ILR W     E
Sbjct: 529 VDRLRSMIGERQEETVQILRGWLEENEE 556


>gi|159045804|ref|YP_001534598.1| flagellar MS-ring protein [Dinoroseobacter shibae DFL 12]
 gi|157913564|gb|ABV94997.1| flagellar MS-ring protein FliF [Dinoroseobacter shibae DFL 12]
          Length = 558

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 129/567 (22%), Positives = 224/567 (39%), Gaps = 27/567 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   + T LG    LI  + +L      +A      +P Y  LY  LE +    +   
Sbjct: 3   MEQIRTTWTGLGLRNQLIAIAAVLGVFGALLALSRTALAPDYALLYSGLEPAAAGEVIAN 62

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  I  ++   G  I V  +   + RI LAA+GLP++   +GYEL D ++ FG TS M
Sbjct: 63  LEQRGIAHQVRGTG--IYVDRAQQDRLRIALAAEGLPAAGG-AGYELLDSLSGFGTTSQM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI S + + +ARVH+       F        +  +  A       
Sbjct: 120 FDAAYWRAKEGELARTIASSASVRSARVHVSAASSRPFEARKEPTASVFLTPARGSLSGG 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDS-TGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
            A+A+R+LV++A+  +   +V+++D+ +G +LT       I              +++ I
Sbjct: 180 QADALRYLVSSAIAGMRPENVSIIDAVSGTMLTGEGPASAIAE-----QTTKADALKLRI 234

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + L A +GV N    V  E   D ++I E V+DP+  V  S   ++   +S +   E +
Sbjct: 235 ERLLEARVGVGNAFVEVNIETERDRERIVERVFDPNGTVPVSRETTESTLQS-SRDSEGS 293

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           V+V  N+P           +   T+   E+ NYE++             +RL++AV+VN 
Sbjct: 294 VSVASNLPDGDANAESAKDAQNETE-TRERINYEVSETQREIERGPGATKRLTVAVLVNG 352

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                  G  +   + D  +A++ ++V +  G +  RGD IT+ SM+   +   +     
Sbjct: 353 IPSVSEDGTVSFTPRPDREMADLEELVKSTVGFDETRGDVITLRSMEMPGSAAPD-PVES 411

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
             +         +VI      + TL +    L  + +                       
Sbjct: 412 SGWFAPQPVDTMSVIQIAALALVTLFLGLFVLRPILKSAPAQAQLPAAETAGLPAPAGSA 471

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS---------------YVSKQSDLR 530
           + A  TG      +   +      +    L   I++                  +    R
Sbjct: 472 TRAGETGSNLVARLQQSAGTAAKEATPEVLSGEISTDASDVAAAARTLTSQDEERDPVTR 531

Query: 531 LLHMIEINEERFAKILRKWARSEIEDR 557
           L  +I+  E    +IL  W     E R
Sbjct: 532 LRQLIKERETETIEILSSWINENEEVR 558


>gi|224370787|ref|YP_002604951.1| FliF [Desulfobacterium autotrophicum HRM2]
 gi|223693504|gb|ACN16787.1| FliF [Desulfobacterium autotrophicum HRM2]
          Length = 571

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 132/580 (22%), Positives = 236/580 (40%), Gaps = 34/580 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M  L  + Q       +   R +++  V+L     F A   + N   Y + Y  L   D 
Sbjct: 1   MNPL--VEQTINLYKEMPLARKILMGVVVLAMFGGFAAMFIWANKTEYKSAYSGLNQEDA 58

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L  A   +RI   G++I VP+  V   R+ +A  G+P   S  G+E+FDK + F
Sbjct: 59  AAIVDRLKTAKTPYRIEAGGATIMVPADQVYDVRLSMAKDGIPK-GSGVGFEIFDKTD-F 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T F+Q+I R RA++GE+ARTI++   +  ARV IV P    F +   +P+AS+++   
Sbjct: 117 GTTEFVQKINRRRAIQGELARTIRAFDEVKDARVMIVFPKDSVFVEETKKPSASILLELK 176

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--------ANEMERNILGKSLS 232
           +        A+ HLVA+A+ +L    VT++D+TG++L         A    RN+      
Sbjct: 177 SDLSEDKVAAVAHLVASAIEDLTPKLVTIVDTTGRILFEGKSEEEKAKIDARNLADSQYK 236

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
                +  +   I   L   +G D     V AE++  T    E +YDP  +    +R  +
Sbjct: 237 YKMRYETTLAERIQTMLERIVGKDKAIVRVTAEMDFSTSNTNEEIYDPFERETTFVRSKQ 296

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
               +  ++ +SA       P V         ++E TDKK +  NYE++ ++  T     
Sbjct: 297 ILAETGQTRQDSAGIPSSVNPVVPPGGTADASAMEMTDKKNDTINYELSRRTRQTIKPMA 356

Query: 353 KLERLSIAVVVNKGRLTEVLG----RSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            ++R+S+A VV+     +             +    + + + IV  A G N  R D +++
Sbjct: 357 VVQRVSVAAVVDGKYEFKTDDSGNRSKTYVPRSQVEMQQFSDIVVKAMGFNETRQDQVSM 416

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
               F           +++    + + +   I  ++ ++         L  +R +     
Sbjct: 417 ECFPFASIDELGVVEPELTGWRAVQKAYGRTIANILLVILL------FLFVIRPIIKTFQ 470

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +  V  +++           T   P   + +D+  Q  F    + ++R        S+
Sbjct: 471 GIQSTVEKETLPGGGIDIIEDGTEPQPLAFVDMDADEQRTFLDEMDKEARDAYIDKMNSE 530

Query: 529 LRLLHMIEIN-EERFA-----------KILRKWARSEIED 556
            R  +M  I   E+ A            I++ W     E+
Sbjct: 531 ERAAYMNNIKIPEKAAYYARKDVIKATNIIKVWLSEVEEE 570


>gi|126176167|ref|YP_001052316.1| flagellar MS-ring protein [Shewanella baltica OS155]
 gi|304412519|ref|ZP_07394125.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|307307178|ref|ZP_07586916.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
 gi|125999372|gb|ABN63447.1| flagellar M-ring protein FliF [Shewanella baltica OS155]
 gi|304349161|gb|EFM13573.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|306910417|gb|EFN40848.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
          Length = 558

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 110/553 (19%), Positives = 207/553 (37%), Gaps = 30/553 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q +         R +I  +++ V +   +    +  +  Y  LY   E  D +++   
Sbjct: 25  MTQKWHRFNRGD--RQVIALALLAVVVASVIVLMLWTATAGYRPLYGSQENVDTSQVLNV 82

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    ID+R+  N  ++ V    VG AR+ LAA+G+  +   SG E  D   + G + FM
Sbjct: 83  LDAEGIDYRLDANSGAVLVAEEQVGNARMILAAKGV-KAKVPSGMEALDNT-ALGTSQFM 140

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPS 183
           ++     +LEGE+ARTI S+  + AARVH+ +P    F +        +  + +      
Sbjct: 141 EQAKYRNSLEGELARTIMSLKLVRAARVHLAIPKQTLFIRQEPELPTASVMLQLDPNTRL 200

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQH 239
                EAI +LVA +V  L   ++ V+D  G+ L+     N+       K L   + +++
Sbjct: 201 SESQVEAIVNLVAGSVTGLTASNIKVVDQDGRYLSENISGNQDLSQSRNKQLQYTRELEN 260

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +  N +  L   LG +NF+  V A++N +  +  +   DP +      +       S  
Sbjct: 261 SLVANASSMLEPVLGQENFQVRVTAKVNFNQVEETKESLDPQN---VVTQERTSVDDSSN 317

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           S          N P  + +     ++     K+EE   Y++        +   +LE LS+
Sbjct: 318 SIAAGIPGALSNKPPQAGKAAADDKT--RNLKQEESRQYDVGRSVRHVRYQQMQLENLSV 375

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V++N                 ++ LA+   +V  A G ++ RGD+ TI + +F      
Sbjct: 376 SVLINSATSQGAF-------NDEAQLAKFGNMVKDAIGFSAARGDSFTINAFEFTPTVTA 428

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                        S ++   +  ++  +    +    L  L +                 
Sbjct: 429 EFTPSPWW----QSENYQAYLRYIIGGILGFGLILFVLRPLVKHLTRTAQMTAPRIEPVA 484

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           LS  P   A+   +    +          +  S+ L               L  +     
Sbjct: 485 LSAAPAG-ALDGPVADAASNQPHQLPSAEWLGSQGLPEP--GSPLTVKMEHLALLANKEP 541

Query: 540 ERFAKILRKWARS 552
            R A+++  W   
Sbjct: 542 ARVAEVIAHWIGD 554


>gi|153001452|ref|YP_001367133.1| flagellar MS-ring protein [Shewanella baltica OS185]
 gi|217972616|ref|YP_002357367.1| flagellar MS-ring protein [Shewanella baltica OS223]
 gi|304409960|ref|ZP_07391579.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|307302327|ref|ZP_07582085.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
 gi|151366070|gb|ABS09070.1| flagellar M-ring protein FliF [Shewanella baltica OS185]
 gi|217497751|gb|ACK45944.1| flagellar M-ring protein FliF [Shewanella baltica OS223]
 gi|304351369|gb|EFM15768.1| flagellar M-ring protein FliF [Shewanella baltica OS183]
 gi|306914365|gb|EFN44786.1| flagellar M-ring protein FliF [Shewanella baltica BA175]
          Length = 560

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 213/558 (38%), Gaps = 24/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  EHKSGMMGNLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  + ++I  +   I VP     + ++ L+  G+ S +++  +   ++ + FG++ 
Sbjct: 76  DVLDKNKVKYQIDVD--VIKVPEDKYQEVKMMLSRAGVDSPAASQDF--LNQDSGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I       
Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGL 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEY 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG DNF S V   ++    +     Y+PD    RS    +    +    
Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVE--NNTTGGS 309

Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P        D       +      +E   N+E++T    T      + R
Sbjct: 310 SGGIPGALSNQPPMESNIPQDATKATESATAGNSHREATRNFELDTTISHTRQQVGAVRR 369

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+         G+ A   + +  L  I +++  A G +S+RGD + + ++ F++
Sbjct: 370 ISVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMD 429

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +   +++         F   I   +  +  L++    +  + +     D+    V 
Sbjct: 430 QLVEDLPALELWEQP----WFWRAIKLGIGALVILVLILAVVRPMLKRLIYPDS----VN 481

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                      + +      +    L++   +            N +        +  ++
Sbjct: 482 MPEDGRLGNELAEIEDQYAADTLGMLNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALV 541

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 542 ANEPELSTQVVKNWLQDN 559


>gi|160876177|ref|YP_001555493.1| flagellar MS-ring protein [Shewanella baltica OS195]
 gi|160861699|gb|ABX50233.1| flagellar M-ring protein FliF [Shewanella baltica OS195]
 gi|315268373|gb|ADT95226.1| flagellar M-ring protein FliF [Shewanella baltica OS678]
          Length = 560

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 212/558 (37%), Gaps = 24/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  EHKSGMMGNLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  + ++I  +   I VP     + ++ L+  G+ S +++  +   ++ + FG++ 
Sbjct: 76  DVLDKNKVKYQIDVD--VIKVPEDKYQEVKMMLSRAGVDSPAASQDF--LNQDSGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I       
Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGL 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEY 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG DNF S V   ++    +     Y+PD    RS    +    +    
Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPSLRSEMTVE--NNTTGGS 309

Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P        D              +E   N+E++T    T      + R
Sbjct: 310 SGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRR 369

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+         G+ A   + +  L  I +++  A G +S+RGD + + ++ F++
Sbjct: 370 ISVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMD 429

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +   +++         F   I   +  +  L++    +  + +     D+      
Sbjct: 430 QLVEDLPALELWEQP----WFWRAIKLGIGALVILVLILAVVRPMLKRLIYPDSVSMPED 485

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G+       I        +      L++   +            N +        +  ++
Sbjct: 486 GRLGNELAEIEDQYAADTLG----MLNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALV 541

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 542 ANEPELSTQVVKNWLQDN 559


>gi|21672359|ref|NP_660426.1| flagellar MS-ring protein [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008478|sp|Q8KA45|FLIF_BUCAP RecName: Full=Flagellar M-ring protein
 gi|21622963|gb|AAM67637.1| flagellar M-ring protein [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 556

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/576 (18%), Positives = 221/576 (38%), Gaps = 62/576 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
             +   F        R    +L  + ++ ++  ++   +  SP Y  LY  L   D   I
Sbjct: 14  KKKFNNFLSYFFKNSR----VLIILFVLAVITTVSISMWRKSPDYQVLYNNLSNEDGEMI 69

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L++  I +++S++   + VP   V + R+H +    P    + GYE+ DK   FG++
Sbjct: 70  IDQLNQMQIPYKLSEDSGQLLVPKDKVYELRLHFSENNSPHR--DIGYEILDKE-RFGVS 126

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--N 181
            F ++I   RALEGE+ARTI+ I+ +  A++HI  P    F +   +P+ SV++      
Sbjct: 127 QFGEQINYQRALEGELARTIEKINVVKNAKIHIAFPKNSLFLEDKKKPSVSVILNLKSNQ 186

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAIQHE 240
              +    AI HL+++++ +L + ++T++D  GKLL  + +    I    L   + ++  
Sbjct: 187 GLDHSQVNAILHLISSSICDLSIENITIIDQFGKLLNNSSLGLNQIDDLKLRYSEEVESR 246

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I   L   LG +N  + V A++N ++ +  +  Y P++  +     S+ +  ++  
Sbjct: 247 YRNRIKNILEPLLGFNNVYAQVTAQINFNSHEKTQEKYTPNTNYKNQAIRSRQSTVNDKI 306

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKK------------------------EEQS 336
                      +   +        +      K                        ++  
Sbjct: 307 NNRKEENKPDELFPQTSFSSNKDLNSTTYSNKKIKKSIIQNNQDNNILHSNSAISHDDTI 366

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
           NYE+N     T  +  +++RLS AV+VN  +                 + +I  +V  A 
Sbjct: 367 NYELNHSLSHTKMNIGEIKRLSAAVIVNFVK----DKNGKSVPINVEQIKKIKNLVREAI 422

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           G +  RGD++ + +  F   Q   +  +++      S  ++T             +TF  
Sbjct: 423 GYSKVRGDSVYVVNESFF--QKNKNSPIKLLKDSNQSNFYST------------FLTFTP 468

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
                        K      K+ ++     +     L+  D  A + S            
Sbjct: 469 WFISLFFLFFLVKKCFFSSSKNNINNQSYKNKTEEDLLEKDTKAENISELKFSK------ 522

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
               +  + +   ++ ++   N    A I+R+W   
Sbjct: 523 ----TSNTDKLIHQICNISNQNPRIIASIIRQWMSD 554


>gi|163742558|ref|ZP_02149944.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10]
 gi|161384143|gb|EDQ08526.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis 2.10]
          Length = 574

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 225/572 (39%), Gaps = 34/572 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
            + Q       L   + LI     ++ I+  +A     N+P    LY  LE      +  
Sbjct: 13  NVQQIKNVWAGLDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDVVR 72

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           AL +   ++ +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS 
Sbjct: 73  ALEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQ 129

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           M +    RA EGE+ARTI +   +  ARVHI       F++      +  ++   +P   
Sbjct: 130 MFDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRTAEPTASVSVVPMGSPITP 189

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
             A AIR L+++AV  L + +V V+D+ G L+ + E    +              I   +
Sbjct: 190 AQANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAG----TDDRSQSIRERV 245

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + + A +G  N    V  E   DT+ IRE   DP+S+V  S  + + A  S+       
Sbjct: 246 MRLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQNQ--SGE 303

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           VTV  N+P           S  +T    E+ NYEI+            ++RL++AV++N 
Sbjct: 304 VTVASNIPDGDA--ASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNG 361

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
             +T   G +  + + +  L  + +++SAA G +  RGD IT+ SM+           V 
Sbjct: 362 VPITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSMEM-PTVEPQGTVVS 420

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
            S  D +     ++I      + TL++    +  +        A     G      P   
Sbjct: 421 ASIFDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPGGDAMDELPALG 480

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHS----------------------RNLQSRINSYV 523
                       ++ALD   ++  +                                   
Sbjct: 481 GGGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGGLPALGGG 540

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 RL  MI   +E   +ILR W     E
Sbjct: 541 GDNPVDRLRSMIGERQEETVQILRGWLEENEE 572


>gi|262276395|ref|ZP_06054204.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
 gi|262220203|gb|EEY71519.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
          Length = 586

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 102/552 (18%), Positives = 216/552 (39%), Gaps = 23/552 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              +   R LIL + + + I L +    +V  P    L    E  ++  +   L +  ID
Sbjct: 45  LGGMDIARQLILVAAVAICISLVVLLFMWVQEPEMRPL-GTYETEELIPVLDHLDQQKID 103

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  +G++I VP+      +++L+  GL +S++  G ++  +   FG++  ++      
Sbjct: 104 YTL--DGNTIRVPAKDYSSIKLNLSRAGL-NSATEEGDDILMQDMGFGVSQQLERERLKL 160

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++A  I+ I  +  ARV + MP    F +     +A+V +     +       ++I
Sbjct: 161 SRERQLAAAIEKIRAVSKARVLLAMPKQSVFVRHNQEASATVFLTVRGTTQLGQEEVDSI 220

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249
             +VA+AVP+L    VTV D  G+LL++   +     +       +  +  +   I+  L
Sbjct: 221 VDMVASAVPSLKPSRVTVTDQHGRLLSSGSQDPIASQRRKEYELERKQEQALREKIDAIL 280

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG+ N+ S V   ++    +     +DP +   RS    ++   ++           
Sbjct: 281 IPVLGLGNYTSQVDVTMDFSAVEETRKRFDPATPSTRSEYTRENYNNTDYV--AGVPGAL 338

Query: 310 QNMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P V                  + +  +E   NYE++T           + R +++V 
Sbjct: 339 SNQPPVDSSIPEDIQDLRNGGAGDKGSLSREATRNYELDTTISHRRGQTGTIARQTVSVA 398

Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+    T    G        D+ L +I +++    G    RGD + + ++ F+E ++ + 
Sbjct: 399 VDYIASTNPETGEITRTPVSDAELEKIRRLLVGGVGYTENRGDILEVLAVPFVEPEVVSL 458

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
           G V +   +  +     +      LV  ++V  L   A+ +L N        +G    + 
Sbjct: 459 GDVPIWEHENFNDWVRWL---AASLVIIVVVLVLIRPAMSKLINPTKDDDALLGPNGEML 515

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
            P          +      LD SN    S S    +  + +  +     +  ++    + 
Sbjct: 516 GPDGLPLSPDDDIGLIGADLDGSNTFGMSSS--NLNLPDLHKDEDLLKAVRALVANEPDL 573

Query: 542 FAKILRKWARSE 553
            A++++ W  ++
Sbjct: 574 AAQVVKSWVSND 585


>gi|120597294|ref|YP_961868.1| flagellar MS-ring protein [Shewanella sp. W3-18-1]
 gi|146294561|ref|YP_001184985.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32]
 gi|120557387|gb|ABM23314.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1]
 gi|145566251|gb|ABP77186.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32]
          Length = 558

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 208/554 (37%), Gaps = 29/554 (5%)

Query: 7   LLQFFKSGTSLGRT-RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +    +      R  R +I  +++ V +   +    +  +  Y  LY   E  D +++  
Sbjct: 22  IADMTQKWHKFNRGDRQVIALALLAVVVASVIVLMLWTATAGYRPLYGSQENVDTSQVLN 81

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L    I +R+  N  ++ V    VG AR+ LAA+G+  +   SG E  D   + G + F
Sbjct: 82  VLEAEGIHYRLEANTGAVLVAEEQVGNARMLLAAKGV-KAKVPSGMEALDNN-ALGTSQF 139

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINP 182
           M++     +LEGE+ARTI S+  + AARVH+ +P    F +        +  + +     
Sbjct: 140 MEQAKYRHSLEGELARTIMSLKLVRAARVHLAIPKQSLFIRQEPELPTASVMLQLDPNTR 199

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQ 238
                 EAI +LVA +V  L   ++ V+D  G+ L+     N+       K L   + ++
Sbjct: 200 LSESQVEAIVNLVAGSVTGLTASNIKVVDQDGRYLSENISGNQDLSQSRNKQLQYTRELE 259

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
           H +  N    L   LG DNF+  V A++N +  +  +   DP + V +      D+  S 
Sbjct: 260 HSLVANAASMLEPVLGHDNFQVRVTAKVNFNQVEETKESLDPQNVVTQERTSIDDSSNS- 318

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                       N P          ++     K+EE   Y++        +   +LE LS
Sbjct: 319 --IAAGIPGALSNKPPQVGTAATDDKT--RNLKQEESRQYDVGRSVRHVRYQQMQLENLS 374

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V++N      V          ++ L +   +V  A G ++ RGD+ TI + +F    +
Sbjct: 375 VSVLINSAAGQGVFNN-------EAQLVKFGNMVKDAIGFSAARGDSFTINAFEFTPTVV 427

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
               T         S ++ + +  ++  +    +    L  L +               +
Sbjct: 428 AEIPTSPWW----QSENYQSYLRYIIGGILGFGLILFVLRPLVKHLTRTAQITAPSIEPA 483

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            LS    ++     +    N A    + D        +              L  +    
Sbjct: 484 ALSAASANALDGPTVDYAPNQAHQLPSADWLGSQGLPE---PGSPLTVKMEHLALLANKE 540

Query: 539 EERFAKILRKWARS 552
             R A+++  W   
Sbjct: 541 PARVAEVIAHWIGD 554


>gi|163738046|ref|ZP_02145462.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107]
 gi|161388662|gb|EDQ13015.1| flagellar M-ring protein FliF [Phaeobacter gallaeciensis BS107]
          Length = 561

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 136/571 (23%), Positives = 225/571 (39%), Gaps = 34/571 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q       L   + LI     ++ I+  +A     N+P    LY  LE      +  A
Sbjct: 1   MQQIKNVWAGLDTRKRLIAVGATVIVILSVLAMSRVANTPTMQLLYAGLESGSAGDVVRA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +   ++ +   G SI VP++   + R+ LA++GLP++    GYEL D ++ FG TS M
Sbjct: 61  LEQRGTEYEVR--GGSIYVPATARDELRMTLASEGLPANGGR-GYELLDSLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   +  ARVHI       F++      +  ++   +P    
Sbjct: 118 FDAAYWRAKEGELARTIVASPHVTQARVHIANTGSNPFQRTAEPTASVSVVPMGSPITPA 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A AIR L+++AV  L + +V V+D+ G L+ + E    +              I   + 
Sbjct: 178 QANAIRFLISSAVTGLAVENVAVIDANGALIGSPEAAAAVGAG----TDDRSQSIRERVM 233

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G  N    V  E   DT+ IRE   DP+S+V  S  + + A  S+       V
Sbjct: 234 RLVEARVGHGNAVVEVSVETVTDTESIREKRIDPESRVAISTDVEERADSSQNQ--SGEV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S  +T    E+ NYEI+            ++RL++AV++N  
Sbjct: 292 TVASNIPDGDA--ASGDGSKASTSATRERVNYEISETEKEILRGPGAIKRLTVAVLLNGV 349

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
            +T   G +  + + +  L  + +++SAA G +  RGD IT+ SM+           V  
Sbjct: 350 PITTATGETVMEPRSEEELGALRELISAAVGFSEERGDVITLKSMEM-PTVEPQGTVVSA 408

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S  D +     ++I      + TL++    +  +        A     G      P    
Sbjct: 409 SIFDNIYLDAMSLIQMAALALVTLILGLFVIRPILSNQASVPALGAPGGDAMDELPALGG 468

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHS----------------------RNLQSRINSYVS 524
                      ++ALD   ++  +                                    
Sbjct: 469 GGFMANPNLGADLALDGEIENNETGQFEPMGGMGMGTGMGMGDMGGMGDMGGLPALGGGG 528

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                RL  MI   +E   +ILR W     E
Sbjct: 529 DNPVDRLRSMIGERQEETVQILRGWLEENEE 559


>gi|308048752|ref|YP_003912318.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
 gi|307630942|gb|ADN75244.1| flagellar M-ring protein FliF [Ferrimonas balearica DSM 9799]
          Length = 583

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 88/554 (15%), Positives = 208/554 (37%), Gaps = 25/554 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
             S  ++   R + L   + + + + +    +   P Y  L  ++E  ++      L + 
Sbjct: 43  LSSFGNIDVLRQISLILALAISLAIAVFLIIWAQEPSYRPL-GQMETQELIDTLDFLDQQ 101

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            + +++  NG++ISVP       R+ L   GL  +     +    + + FG++  M++  
Sbjct: 102 KLPYQL--NGNTISVPEDRFADIRLMLTRNGLGPARPQQDF--LTQDSGFGVSQRMEQAR 157

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--A 188
              + E  +A  ++ +  +  ARV + +P    F +    P+A+V++     +  +    
Sbjct: 158 LKHSQEQTLASAVEELRSVQRARVILALPQQNVFARQQREPSATVVVTLNRGTELRQSEV 217

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNIN 246
           +A+  +VA+AV  L    VTV D  G+LL +   +       + L +    +      I+
Sbjct: 218 DAVVDIVASAVHGLKPARVTVTDQHGRLLNSGSQDGISAQARRELELRIQQEQLYREKID 277

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   LG+  + + V   ++    +     Y+PD    RS  L +D Q      P    
Sbjct: 278 SILIPVLGIGRYSAQVDVTMDFSAVEETSRRYNPDMPAVRSEMLIEDNQSGS--GPVGIP 335

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDK-------KEEQSNYEINTKSIATTHDNYKLERLSI 359
               N P ++             ++        E   N+E+++    T      + R+++
Sbjct: 336 GALTNQPPIASEIPQQVEGAGQDERLASGRNRSEVTRNFELDSTISHTRQQVGTVRRVTL 395

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V V+   +    G +      ++ LA I +++  + G N+ RGD + + S+ F ++   
Sbjct: 396 SVAVDHKPVAGADGATTMAPLSETELASIRRLLMGSVGFNAARGDVLEVVSVPFADDLAL 455

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +         F   +   +  +G L++  + +  + +     +  K   G    
Sbjct: 456 EPLNIPIYE----QGWFWRAVKWSLGALGLLVLFLVVVRPMVKRLLNPNEGKATEGATG- 510

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P    + +      +    L++ + D            + +        +  ++    
Sbjct: 511 --PGGDLAELEDQYAADTLGLLNTGDSDYSYAEDGSILLPDLHKDDDMLRAIRALVANEP 568

Query: 540 ERFAKILRKWARSE 553
           +   ++++ W   +
Sbjct: 569 DLSTQVIKSWLNED 582


>gi|315180474|gb|ADT87388.1| flagellar M-ring protein [Vibrio furnissii NCTC 11218]
          Length = 568

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 105/570 (18%), Positives = 213/570 (37%), Gaps = 42/570 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A L+    F+         R +++ ++  +     +    + +S  Y  LY      D +
Sbjct: 20  AALENAKSFWS-----SSQRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L ++ + + ++ +   I VP+  V   R+ LAA+GL      SG++  +   + G
Sbjct: 75  QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178
            + FM+      ALEGE+AR+I ++  I  ARVH+ +P    F++     A+ +  V + 
Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQ 235
                      +I +LV+ A+  L   +V V+D  G+LL+   +     +   +     +
Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++  +    +  L   LG  NFR  V A+++   +Q  E  Y            +    
Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESY----GAPVMRSETIFND 309

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            +  S          N P V+D             + E +  Y +  + +   H    LE
Sbjct: 310 ENSGSMALGIPGALSNTPPVTDGDTNTTPESR-NVRNEAKREYAVGGRVVHVQHQQGVLE 368

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +L+I+V+VN+         +  +G  D  LA I  ++  A G ++ RGD I ++S  F+ 
Sbjct: 369 KLTISVIVNEH-------NATSEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
           + +     +       + +           ++ ++L+  L L  L +     D  +    
Sbjct: 422 SAMKEVEPLAWYKDPSVFQ----AAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDESSDA 477

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY------------- 522
                     +           + A  + +    S        +++              
Sbjct: 478 KALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLPESD 537

Query: 523 -VSKQSDLRLLHMIEINEERFAKILRKWAR 551
              +     L  + + + +R  +ILR W  
Sbjct: 538 SPLEIQIQHLKTIAQNDPQRVTEILRTWMN 567


>gi|163750550|ref|ZP_02157788.1| flagellar M-ring protein [Shewanella benthica KT99]
 gi|161329705|gb|EDQ00694.1| flagellar M-ring protein [Shewanella benthica KT99]
          Length = 567

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 93/554 (16%), Positives = 204/554 (36%), Gaps = 27/554 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
                  R + +   + + + L +    +   P Y  L  K++  ++ ++   L +  ID
Sbjct: 29  FGGADMLRQITMILALAICLALAVFIMLWAQEPEYRPL-GKMDTQEMVKVLDVLDKNKID 87

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +RI  +   I VP       ++ L+ +G+  +S ++ Y    + + FG++  M+      
Sbjct: 88  YRIDID--VIKVPEDQYQAVKLMLSREGIDGASRSNDY--LSQDSGFGVSQRMELARLKH 143

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIR 192
           + E  +AR I+ +  I  A+V + +P    F +  A+P+A+V++         +  +A+ 
Sbjct: 144 SQELNLARAIEELRSINRAKVILAIPKENVFARNRAKPSATVVLNVRRGGLGQEEVDAVV 203

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS--IVQAIQHEIEMNINKALA 250
            +VA+AV  L    VTV DS G+LL +   +           + Q  + E    +   L 
Sbjct: 204 DIVASAVQGLIPTRVTVTDSNGRLLNSGSQDAVSARARRESDLAQQKEAEYRTKVQSILM 263

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
             LG +NF S V   ++    +     Y+PD    RS  + +    S             
Sbjct: 264 PILGPENFTSQVDVTMDFTAVEQTSKRYNPDLPALRSEMIVE--NNSNGGSASGIPGALS 321

Query: 311 NMPHVSDRKVPL--------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
           N P +                 +   +  +E   N+E+NT    T      + R+S++V 
Sbjct: 322 NQPPMESDIPQNALTTDAQLNSARRGSSHREATRNFELNTTISHTRQQVGTVRRISVSVA 381

Query: 363 VNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           VN         G+     + +  LA I +++  A G +++RGD + + ++ F++  +   
Sbjct: 382 VNYKTGTLGEDGQINRVPRTEQELANIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLIEEL 441

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
              ++         F   +   +  V  L +    +  + +           V       
Sbjct: 442 PAPELWEQP----WFWRALKLGMGGVIILALILFIVRPMLKRLIYP----ASVNIPDEPK 493

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                + +      +    L+    +            + +        +  ++    E 
Sbjct: 494 FGDELAEIEDQFASDTLGMLNRPEAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPEL 553

Query: 542 FAKILRKWARSEIE 555
             ++++ W + + +
Sbjct: 554 STQVIKGWLQQDEQ 567


>gi|126175128|ref|YP_001051277.1| flagellar MS-ring protein [Shewanella baltica OS155]
 gi|125998333|gb|ABN62408.1| flagellar M-ring protein FliF [Shewanella baltica OS155]
          Length = 560

 Score =  313 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 212/558 (37%), Gaps = 24/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  EHKSGMMGNLGGVDMMRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  + ++I  +   I VP     + ++ L+  G+ S +++  +   ++ + FG++ 
Sbjct: 76  DVLDKNKVKYQIDVD--VIKVPEDKYQEVKMMLSRAGVDSPAASQDF--LNQDSGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I       
Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNASKPSATVVINTRRGGL 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGASATARRELELVQQKEAEY 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG DNF S V   ++    +     Y+PD    RS    +    +    
Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTSKRYNPDLPALRSEMTVE--NNTTGGS 309

Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P        D              +E   N+E++T    T      + R
Sbjct: 310 SGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQVGAVRR 369

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+         G+ A   + +  L  I +++  A G +S+RGD + + ++ F++
Sbjct: 370 ISVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSSQRGDVLEVVTVPFMD 429

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +   +++         F   I   +  +  L++    +  + +     D+    V 
Sbjct: 430 QLVEDLPALELWEQP----WFWRAIKLGIGALVILVLILAVVRPMLKRLIYPDS----VN 481

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                      + +      +    L++   +            N +        +  ++
Sbjct: 482 MPEDGRLGNELAEIEDQYAADTLGMLNTQEAEYSYADDGSIHIPNLHKDDDMIKAIRALV 541

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 542 ANEPELSTQVVKNWLQDN 559


>gi|254466479|ref|ZP_05079890.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I]
 gi|206687387|gb|EDZ47869.1| flagellar M-ring protein FliF [Rhodobacterales bacterium Y4I]
          Length = 556

 Score =  313 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 134/566 (23%), Positives = 224/566 (39%), Gaps = 29/566 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q       +   + LI     ++ I+  +A     + P    LY  LE      +  A
Sbjct: 1   MQQIKNVWAEMDMRKRLIAVGATVIMILSVIAMSHVASKPSMTLLYAGLESGSAGDVVRA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +    + +   GSSI VPS+   + R+ LA++GLP++    GYEL D ++ FG TS M
Sbjct: 61  LEQRGTQYEVR--GSSIYVPSTQRDELRMTLASEGLPANGGK-GYELLDSLSGFGTTSQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   +  ARVHI    +  F++      +  ++   +P    
Sbjct: 118 FDAAYWRAKEGELARTIVASPHVSQARVHIANTGLNPFQRTVEPTASVSIVPMGSPITPA 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A AIR LV++AV  L + +V V+D+ G L+       +    + +        I   + 
Sbjct: 178 QANAIRFLVSSAVTGLAVENVAVIDANGALI----GSSDATAAAGAGTDDRSQTIRERVM 233

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + + A +G  N    V  E   DT+ IRE + DP S+V  S  + + A  S        V
Sbjct: 234 RLVEARVGQGNAVVEVSVETVTDTESIREKLIDPKSRVAVSTDVEERADSSTNQ--AGEV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S  NT    E+ NYEI+            ++RL++AV++N  
Sbjct: 292 TVASNIPDGDA--ASGQGSKANTSATRERINYEISETEKEILRGPGAIKRLTVAVLINGT 349

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
            +T   G +  Q + +  LA + +++SAA G ++ RGD IT+ SM+    +         
Sbjct: 350 AVTNDAGETVFQPRPEDELAAMRELISAAVGFDAERGDVITLKSMELPAVE-PQGTVATA 408

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG----------- 475
           SF D L     +++      + +L++    +  +        A     G           
Sbjct: 409 SFFDNLYFDAMSLVQIGALALVSLILGLFVVRPILSNQATPVAALPSPGGGDLPGLPGIG 468

Query: 476 ------GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                    + +   +   +                         +              
Sbjct: 469 GGGFMTAPDLGAGLALDGEIENNETGQFEPLGGLPAMGTGDMMGAIGLPAMGGGMDDPVD 528

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
           RL +MI   +E   +ILR W     E
Sbjct: 529 RLRNMIGERQEETVQILRGWLEENRE 554


>gi|260768771|ref|ZP_05877705.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260616801|gb|EEX41986.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
          Length = 568

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 105/570 (18%), Positives = 213/570 (37%), Gaps = 42/570 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A L+    F+         R +++ ++  +     +    + +S  Y  LY      D +
Sbjct: 20  AALENAKSFWS-----SSQRNVVIITIFSMISAAIIVIMLWASSEDYRPLYSNSSNYDSS 74

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L ++ + + ++ +   I VP+  V   R+ LAA+GL      SG++  +   + G
Sbjct: 75  QVLQLLDQSGLKYELNKDSGQIMVPAKDVATTRMMLAAKGL-KQQLPSGFDALESKGALG 133

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIR 178
            + FM+      ALEGE+AR+I ++  I  ARVH+ +P    F++     A+ +  V + 
Sbjct: 134 ESQFMESARYRHALEGELARSIVTMESIALARVHLAIPKTSLFKRKDQEQAQASVMVQLI 193

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQ 235
                      +I +LV+ A+  L   +V V+D  G+LL+   +     +   +     +
Sbjct: 194 DGMDLKSAQVTSIVNLVSGAIIGLKPENVRVIDQYGRLLSKDGSMGDISHSGDRQNDFRR 253

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++  +    +  L   LG  NFR  V A+++   +Q  E  Y            +    
Sbjct: 254 TLETRLVSQASDMLTPILGAANFRVQVAAKVDFSKRQETEESY----GAPVMRSETIFND 309

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            +  S          N P V+D             + E +  Y +  + +   H    LE
Sbjct: 310 ENSGSMALGIPGALSNTPPVTDGDTNATPESR-NVRNEAKREYAVGGRVVHVQHQQGVLE 368

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +L+I+V+VN+         +  +G  D  LA I  ++  A G ++ RGD I ++S  F+ 
Sbjct: 369 KLTISVIVNEHS-------ATSEGWSDESLARITNVIQNAVGYDAVRGDQIYVSSFPFVV 421

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
           + +     +       + +           ++ ++L+  L L  L +     D  +    
Sbjct: 422 SAMKEVEPLAWYKDPSVFQ----AAKYGFGVLMSVLLIVLVLRPLAQFLTKPDNDESSDA 477

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY------------- 522
                     +           + A  + +    S        +++              
Sbjct: 478 KALNELSAESAMGTAGDEALLASQAGQAPSLPNHSPQELDTLSLDAAGIKALHDTLPESD 537

Query: 523 -VSKQSDLRLLHMIEINEERFAKILRKWAR 551
              +     L  + + + +R  +ILR W  
Sbjct: 538 SPLEIQIQHLKTIAQNDPQRVTEILRTWMN 567


>gi|260767966|ref|ZP_05876900.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260615996|gb|EEX41181.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
          Length = 579

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/526 (18%), Positives = 202/526 (38%), Gaps = 26/526 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + +S  +  LY + E  DV  I   L   +I +R+ +    + VP   V + R+ LAA+G
Sbjct: 61  WSSSQSFRALYGQQEQFDVGDIVSVLEAESISYRLQEQNGQVLVPEGEVARVRMLLAAKG 120

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +   +G +   + +S G + FM+       LEGE+ RTI +++ +  ARVH+ +P  
Sbjct: 121 I-KAKLPTGLDSLQEDSSLGTSQFMETARYRHGLEGELVRTIIALNAVSNARVHLAIPRQ 179

Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +      ++ +   ++A      +  EAI +LV  +V  +    V+V+D  G+LL+
Sbjct: 180 TLFVRQNGEAPSASVMLELKAGEDLKPEQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLS 239

Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           A+        +  K L   + ++ ++       L   +G  NFR  V A+++    +  +
Sbjct: 240 ADVASGDSGKVNAKYLDYQKNLEKQVIQRAADMLTPIVGPSNFRVQVAADMDFSRVEETQ 299

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            + D                 S             N P V+  K     S  +  + E  
Sbjct: 300 EILD---NTPVVQNEHTVQNNSIDQIALGIPGSLSNQPPVTGEKPTQD-SQNSNARSEIN 355

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y + +    T +   ++++L+++V++N                 D    EI+ ++  A
Sbjct: 356 RQYAVGSSVRRTQYQQGQVKKLNVSVLLNSAAAPNG------TAWSDQEKTEISAMLMDA 409

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI++ RGD++++ S +F   ++    ++       + +     +  ++  +  + + F 
Sbjct: 410 VGISAARGDSLSLMSFNFTPIEIEAPPSIPWWQDPTVQQ----PLRYVIGGLLGMAMIFF 465

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            L  L       D +  E+        P   +  T      ++       +     S  L
Sbjct: 466 VLRPLIMHLTGADRRSQELEFAPPPEEPYYENLQTREEREREDALNRRLEEKGIKASSGL 525

Query: 516 Q-----SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                         +     L  +     ER A++L++W       
Sbjct: 526 DVSSDMLPPPGSPLEIQLKHLQLIANEEPERVAEVLKQWVNVNEHS 571


>gi|114765263|ref|ZP_01444395.1| flagellar M-ring protein [Pelagibaca bermudensis HTCC2601]
 gi|114542398|gb|EAU45426.1| flagellar M-ring protein [Roseovarius sp. HTCC2601]
          Length = 535

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 147/534 (27%), Positives = 245/534 (45%), Gaps = 16/534 (2%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVG 91
            +         V +P Y  LY  L  ++  R+  +L +A I  R    G+++SVP   + 
Sbjct: 1   MVFAMFFGLSAVTTPDYVALYRDLSPAEAGRMVESLEQAGIRSRTDMAGTAVSVPGEDMA 60

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +AR+ LA  GLP+  +  G+E+FD+ +  G+ +FMQ + R RA+EGE+AR+IQ+I G+ A
Sbjct: 61  RARMLLAGAGLPNDGTP-GWEIFDEASGLGMNTFMQRVNRARAMEGELARSIQTIDGVEA 119

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211
           ARVH+V+P+   F +   RP+ASV++R       + A AIR LVA+AVP+L    VTVL 
Sbjct: 120 ARVHLVLPEREPFSRERPRPSASVIVRGSRQVGMRQARAIRSLVASAVPDLAPAQVTVLS 179

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           +TG+ + + + E        S    I+  +   I + L+A +G  N R  V  +L  + Q
Sbjct: 180 ATGETILSEDGEAGSEASLQSARAQIEDRLGQRIAQILSARVGAGNARVQVSVDLTTERQ 239

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
            +RE  YDPD +V RS    ++ +  + +     V V  ++P      VP          
Sbjct: 240 VVREQTYDPDQRVVRSTETREETREDQ-TAAGGEVGVADDIPAALAADVPGNNRNTANS- 297

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391
             E  NYEI   S  T  +   +E++S+AV+VN     +  G    + +    L  +  +
Sbjct: 298 TNEIVNYEIGGTSSETVREPGDIEKVSVAVLVNGIYNVQDGGAVDYEERSQEELQRLEAL 357

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
           V +A G +  RGD++ + S+ F++  +     V  SF   L+ +  T++  +  L     
Sbjct: 358 VQSAIGFDEARGDSVEVVSLRFMDYSMDVGEPVSRSFAQTLTENTGTILRGVFALALVAA 417

Query: 452 VTFLGLHA-LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI-- 508
           V  LG+   L R+ +     +G       L P     A TTG     + A     + +  
Sbjct: 418 VLALGVRPALNRVFDQPAIAEGGSADLPGLPPSGNLPATTTGESATASNAQGGGERPVYQ 477

Query: 509 ----------FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                      +      + +   V +     +  +IE   E    ++R W   
Sbjct: 478 TGTVLDPLPPGADEMVELAAVQGGVPRGLINTVSELIEREPEGAITVVRSWLAE 531


>gi|302392396|ref|YP_003828216.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501]
 gi|302204473|gb|ADL13151.1| flagellar M-ring protein FliF [Acetohalobium arabaticum DSM 5501]
          Length = 524

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 138/563 (24%), Positives = 232/563 (41%), Gaps = 53/563 (9%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +   + Q  +   +L     +I++S  +V I++ +    + + P+Y  L+  L + D  
Sbjct: 4   NLKQMIEQVKELWNNLDTKAKVIISSSAIVSIIVLLLVTNWASQPNYVTLFNDLTMKDAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L E  ID+++  +G+ ISVP+  V + R+ LA++GLP   +  G+E+FDK    G
Sbjct: 64  AITKQLDEKQIDYKLGADGTKISVPAQKVHQVRLDLASKGLPQKGA-VGFEIFDKNQ-LG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180
            T F Q++   RAL GE+AR+I  +  +  A+V I  P    +        ASVM++   
Sbjct: 122 STDFEQQVNFYRALSGELARSIMHLQNVKFAKVQISAPRESLYLDKKKVVKASVMLKMKE 181

Query: 181 -NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT------ANEMERNILGKSLSI 233
                 K  E I +LVA++V +L   +VTV+D  G LLT            +   K L +
Sbjct: 182 YAELDLKQVEGITNLVASSVEDLKPENVTVVDDRGNLLTAELNKEDKFNNTDFSPKLLEL 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRL 290
               +  +E  +N  L+  LG DN    V A+LN D +Q+    Y+P   D  V RS + 
Sbjct: 242 ENDFESNMESELNTMLSKVLGPDNVVVRVNAKLNFDRRQMESRTYEPVNDDQGVVRSEQS 301

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           ++ +   +   P      E N+P              N DK+E  +NYEIN K    T  
Sbjct: 302 TEVSYSGQGDTPSGVPGTESNIPG----YEGGEEQSSNYDKEETTTNYEINEKIETYTQV 357

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              +E++S+AV+V+K                 +    I + V +A G ++ RGD ITIT+
Sbjct: 358 PGDVEKMSVAVMVDK-------------ELSPAQTESIRQSVESAVGYSAERGDQITITN 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            +F  +          +      R +  +    + ++    +       LRRL +     
Sbjct: 405 FEFDRSLEKKMTAEMEAQKSAEQRRWIIIGIITILVLIIGFLI------LRRLRSGSGRA 458

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                G   L         T      +                           K+    
Sbjct: 459 GDGGQGAEELDVVVDDQGQTETAATEEKELSP-----------------EERKRKEMKEE 501

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  ++E   E  A++L+ W   E
Sbjct: 502 ISDLVEQQPEEVARLLKTWLAEE 524


>gi|157961189|ref|YP_001501223.1| flagellar MS-ring protein [Shewanella pealeana ATCC 700345]
 gi|157846189|gb|ABV86688.1| flagellar M-ring protein FliF [Shewanella pealeana ATCC 700345]
          Length = 566

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 217/555 (39%), Gaps = 25/555 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
              +   +   R L +   + + + + +    +   P Y  L  ++  +++ ++  AL +
Sbjct: 26  IMGALGGVDMLRQLTMILALAICLAVAVFVMIWAQEPEYRPL-GQMSTAEMVQVLDALDK 84

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + + I   G  + VP       ++ L+ +GL +  +N+ +   +K + FG++  M++ 
Sbjct: 85  NQVKYEIQ--GDVVKVPEDKYQDVKMLLSREGLDNQEANNDF--LNKDSGFGVSQRMEQA 140

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSA 188
               + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V++    +    +  
Sbjct: 141 RLKHSQEQNLARVIEELKSVTRAKVILALPRENVFARNRSKPSATVVVSTRRSGLSQEEV 200

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246
           ++I  +VA+AV NL+   VTV D+ G+LL +   +    I  + L IVQ  + E    + 
Sbjct: 201 DSIVDIVASAVHNLEPNKVTVTDANGRLLNSGTQDGASAIARRELEIVQQKESEYRTKVE 260

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   LG +NF S V   ++    +     Y+PD    RS  + +    S         
Sbjct: 261 SILMPILGPENFTSQVDVSMDFTAVEQTAKRYNPDLPALRSEMVVE--NNSAGGTSGGIP 318

Query: 307 TVEQNMPHVSDRKVPLPRS------LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
               N P ++        +         T  KE   N+E+NT    T      L R+S++
Sbjct: 319 GALSNQPPMAADIPQEVNAEESLAVSSGTSHKEATRNFELNTTISHTRQQVGTLRRVSVS 378

Query: 361 VVVNKGRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           V V+         G      + +  LA I +++  A G N++RGD I + S+ F++  + 
Sbjct: 379 VAVDFKNGPVSEDGSVNRVPRTEQELANIRRLLEGAVGFNTQRGDIIEVVSVPFMDQLIE 438

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           ++   ++         F   +  ++  +  L++    +  + +     D+    V     
Sbjct: 439 DAPPQEMWEQP----WFWRAVKLVLGALVVLVLILAVVRPMLKRLVYPDS----VKMPDE 490

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                  + +      +    L     +            N +        +  ++    
Sbjct: 491 PQTGGELAEIEDQYAADTLGMLQRPEAEYSYADDGSILIPNLHKDDDMIKAIRALVANEP 550

Query: 540 ERFAKILRKWARSEI 554
           E   ++++ W   + 
Sbjct: 551 ELSTQVVKNWLLEDD 565


>gi|212634367|ref|YP_002310892.1| flagellar MS-ring protein [Shewanella piezotolerans WP3]
 gi|212555851|gb|ACJ28305.1| Flagellar FliF M-ring protein [Shewanella piezotolerans WP3]
          Length = 531

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 99/545 (18%), Positives = 210/545 (38%), Gaps = 24/545 (4%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
             R + +   + + + L +    +   P Y  L  ++   ++ ++   L +  I ++I  
Sbjct: 1   MLRQVTMILALAICLALAVFVMIWAQEPEYRPL-GQMSTQEMVQVLDELDKNKIKYQIQ- 58

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
            G  + VP       ++ L+  GL  +++N  Y    K + FG++  M++     + E  
Sbjct: 59  -GDVVKVPEDKYQDVKMMLSRAGLDQAAANDDY--LSKDSGFGVSQRMEQARLKHSQEQN 115

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSAEAIRHLVAA 197
           +AR I+ +  +  A+V + +P    F +  ++P+A+V++         +  ++I  +VA+
Sbjct: 116 LARAIEELKSVSRAKVILALPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIVDIVAS 175

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
           AV NL+   VTV DS G+LL +   +    I  + L IVQ  + E    +   L   LG 
Sbjct: 176 AVHNLEPNKVTVTDSNGRLLNSGSQDGVSAIARRELEIVQQKESEYRNKVESILMPILGP 235

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
           +NF S V   ++    +     Y+PD    RS  + +    S             N P +
Sbjct: 236 ENFTSQVDVSMDFTAVEQTAKRYNPDLPALRSEMVVE--NNSNGGTTGGIPGALSNQPPM 293

Query: 316 SDRKVP-----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           +                 +  KE   N+E++T    T      L R+S++V V+      
Sbjct: 294 NSDIPQEVGTETTSVSSGSSHKEATRNFELDTTISHTRQQIGTLRRVSVSVAVDFKNAPA 353

Query: 371 -VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
              G  +   + +  LA I +++  A G N++RGD I + ++ F++  + ++   ++   
Sbjct: 354 AEDGSVSRVPRTEQELANIRRLLEGAVGFNTQRGDMIEVVTVPFMDQLIEDAPAPEMWEQ 413

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
                 F   +   +  +  L +    +  + +     D+ K     K       I    
Sbjct: 414 P----WFWRAVKLGLGTLVALAIVMFIISPMLKRIVYPDSAKLPEEPKMGDELAEIEDQY 469

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
               +      L+    +            + +        +  ++    E   ++++ W
Sbjct: 470 AADTLG----MLERPEAEYSYADDGSILIPDLHKDDDMIKAIRAIVANEPELSTQVVKNW 525

Query: 550 ARSEI 554
              + 
Sbjct: 526 LIEDD 530


>gi|312884805|ref|ZP_07744497.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367457|gb|EFP95017.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 582

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/527 (19%), Positives = 204/527 (38%), Gaps = 26/527 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           + ++  +  LY + E  D   I   L   NI++R+ +    + VP   V + R+ LAA+G
Sbjct: 64  WSSTQSFRPLYSQQESFDTGDIISVLEAENINYRLQEQNGQVLVPEGEVARIRMLLAAKG 123

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +  +    G +   + +S G + F++       LEGE+ RTI S++ +  ARVH+ +P  
Sbjct: 124 V-KAKLPMGLDSLQEDSSLGTSQFIETARYRHGLEGELIRTIISLNSVANARVHLAIPRQ 182

Query: 162 GSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             F +      ++ +   +R       +  EAI +LV  +V  +    V+V+D  G+LL+
Sbjct: 183 TLFVRQDREAPSASVMLELRPGEELNSEQVEAIVNLVVGSVTGMKPEQVSVVDQYGRLLS 242

Query: 219 AN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           A    E    +  K L   + ++ +I    +  L   LG  N+R  V A++N    +  +
Sbjct: 243 AEIGSEQAGKVNAKYLEYQKNVEKQIIQRASDMLTPILGPSNYRVQVSADMNFSQVEETQ 302

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
            + D         +       S             N P V+    P   S     + E  
Sbjct: 303 EILD---ATPVVQKEHTITNNSVDQIALGVPGTLSNQPPVTGE-APTQDSQNTNARAEIN 358

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
             Y + +    T +   K+E+LS++V++N+    + L         D    +I+ +++ A
Sbjct: 359 RQYAVGSSVRRTQYQQGKVEKLSMSVLLNESAAPDGL------AWTDDEKNQISTMLADA 412

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI + RGD+++I S  F    +    ++       + +     +  ++  +  + + F 
Sbjct: 413 VGITNDRGDSLSIMSFSFTPISIEAPVSLPWWQDPTVQQ----PMRYVIGGMLGMAMIFF 468

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS--- 512
            L  L         +       +    P   +  T      + +     ++     S   
Sbjct: 469 VLRPLIMHLTGAQNQNQSDDSVAPQDEPSYDNLQTRAEREREEVLNRKLSERGIEASNGL 528

Query: 513 --RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
              N          +     L  + +   ER A++L++W      +R
Sbjct: 529 DVGNDMLPPAGSPLEIQLKHLQLIADEEPERVAEVLKQWVNENEHNR 575


>gi|258624661|ref|ZP_05719596.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|258583053|gb|EEW07867.1| flagellar M-ring protein [Vibrio mimicus VM603]
          Length = 585

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 99/570 (17%), Positives = 216/570 (37%), Gaps = 32/570 (5%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  ++D+L Q +         R L+L++V+   +   +    + +  ++  LY + E  D
Sbjct: 28  MDKLIDKLKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSVQNFRPLYSQQERFD 82

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  I   L    I +R+ +    + V    V + R+ LA +G+  +   +G++   + +S
Sbjct: 83  IGEIVSVLESEGISYRMQEENGQVLVQEGEVARIRMLLATKGV-KAKLPTGFDSLKEDSS 141

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
            G + FM+       LEGE+ RTI S++ +  ARVH+ +P+   F +      ++ ++  
Sbjct: 142 LGTSQFMETARYRHGLEGELVRTILSLNAVTNARVHLAIPNQTLFVRQNRENPSASVLLE 201

Query: 178 -RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSI 233
            +       +  EAI +LV  +V  +    V+V+D  G+LL+A+     E  +  K L  
Sbjct: 202 LKPGKNLKPQQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADVTSAAEGKVNAKYLEY 261

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            + ++ +I       L   +   NFR  V A+++    +  E + D              
Sbjct: 262 QKNVEKQIIQRAADMLTPIVSPTNFRIQVAADMDFSQVEETEEILD---DTPVVRDEHTI 318

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV--PLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
              S             N P ++ +        S     + E    Y + +    T +  
Sbjct: 319 QNNSVDQIALGVPGSLSNQPPITGKAGEKQTKDSQNTNARSEVNRQYAVGSNIRRTQYQQ 378

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            ++++LS++V++N                  +   +I+ +V  A G++  RGD++++ S 
Sbjct: 379 GQIKKLSVSVLLNSQAAPNGK------AWTSAEKKQISTMVMDAVGVSQGRGDSLSLMSF 432

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
           +F    +  + T+       + +     +  ++  +  + + F  L  L       D + 
Sbjct: 433 NFTPIDIEAAPTIPWWQDPTVQQ----PMRYVIGGMLGIAMIFFVLRPLIMHLTGADRRV 488

Query: 472 GEVGGKSILSPPPIS----SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
            E+           +           + N  +              +    +     +  
Sbjct: 489 QELEFAEQEELIDENLQTREESEREEVLNRRLLEKGIAASSGLDIASDMLPLPGSPLEIQ 548

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDR 557
              L  +     ER A++L++W      ++
Sbjct: 549 LKHLQLIANEEPERVAEVLKQWVNLNEHNK 578


>gi|323493122|ref|ZP_08098253.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546]
 gi|323312593|gb|EGA65726.1| flagellar MS-ring protein [Vibrio brasiliensis LMG 20546]
          Length = 582

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/566 (18%), Positives = 215/566 (37%), Gaps = 28/566 (4%)

Query: 5   DQLLQFFKSGTSL--GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + QF      L     R L+L++V+   +   +    + ++  +  LY + E  D   
Sbjct: 25  NAMHQFSAKVKQLWSNSQRNLVLSAVLAAIVAAIIVVALWSSTQSFRPLYSQQERFDTGE 84

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I++R+ +    + V    V + R+ LAA+G+  +   +G +   + +S G 
Sbjct: 85  IVSVLESEGINYRLQEKNGQVLVAEGEVARIRMLLAAKGV-KAKLPTGLDSLQEDSSLGT 143

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRA 179
           + FM+       LEGE+ RTI S++ +  ARVH+ +P    F +  +   ++ +   ++ 
Sbjct: 144 SQFMETARYRHGLEGELVRTIISLNAVSNARVHLAIPRQTLFVRQNSEAPSASVMLELKP 203

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQA 236
                    EAI +L+  +V  +    V+V+D  G+LL+A+        +  K L   ++
Sbjct: 204 GEELKPPQVEAIINLLVGSVTGMKPEQVSVIDQYGRLLSADVASAEAGKVNAKYLDYQKS 263

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           ++ +I       L   +G  NFR  V A++N    +  + + D                 
Sbjct: 264 VEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQVEETQEILD---NTPIVRNEHTITNN 320

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S             N P V+        S     + E    Y + +    T +   ++E+
Sbjct: 321 SIDQIALGVPGTLSNQPPVTGEVPTQD-SQNTNARSEINRQYAVGSSVRRTQYQQGQIEK 379

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS++V++N+                +   ++I+ +++ A GI  +RGD+ +I S +F   
Sbjct: 380 LSVSVLLNEAAAPNG------TAWTEDEKSQISTMITDAVGIADQRGDSFSIMSFNFTPL 433

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +    ++       + +     +  ++  +  + + F  L  L       D +  E+  
Sbjct: 434 AIEAPPSIPWWQDPTVQQ----PMRYVIGGMLGMAMIFFVLRPLIMHLTGADTRSQELEF 489

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR-----NLQSRINSYVSKQSDLRL 531
                 P   +  T      +       ++   + S      N          +     L
Sbjct: 490 ADPQDEPVYDNLQTREEREREEDLNRKLSEKGIAASSGLNVGNDMLPPPGSPLEIQLKHL 549

Query: 532 LHMIEINEERFAKILRKWARSEIEDR 557
             +     ER A++L++W       R
Sbjct: 550 QLIANEEPERVAEVLKQWVNVNEHSR 575


>gi|289548426|ref|YP_003473414.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484]
 gi|289182043|gb|ADC89287.1| flagellar M-ring protein FliF [Thermocrinis albus DSM 14484]
          Length = 496

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 136/555 (24%), Positives = 234/555 (42%), Gaps = 64/555 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M     L +       L   + LIL+  +   ++  +      +S  Y  LY  L   D+
Sbjct: 1   MDYRTLLRELKTKIEQLSTKQKLILSGAVAAGLISLLLMVLLASSARYVPLYSGLSQEDM 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           + +   L +  + +++  +G S+ VP   V   R+ LAA+G+PS     GYE+FDK N F
Sbjct: 61  SAVLSELEKEGVPYKLGGDGRSVLVPEDKVRDIRLKLAAKGIPSKGV-VGYEIFDKSN-F 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
            ++ F  ++   RA+EGE+A+TI  I G+  A+V+I MP    F +   +PTASV++R  
Sbjct: 119 AVSDFQNQVNFKRAVEGELAKTIMRIQGVEEAKVNIGMPQRSIFVREEEQPTASVLVRLK 178

Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAI 237
                  +  +AIR+LVA +VP LD  +V V+D  G+ LT+    E ++  + L I +  
Sbjct: 179 PGYELSPEQVKAIRNLVALSVPRLDPKNVVVIDDRGRDLTSLLGEEMDLTERELRIKREY 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + ++E  + K L   LGV N +  V A++++  ++ +E +YDPD     S +  K+    
Sbjct: 239 EEQVEKKLQKILEEALGVGNVKVRVSADIDLTRRESKEEIYDPDMTAVVSQQKKKERVLG 298

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            T           N+P  +            +++ E  +NYE++ K I T     K+ RL
Sbjct: 299 GTL--GGVPGTASNIPPATGV---GAGGQTLSERTETITNYEVSKKQIYTEEPLVKVRRL 353

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+ VVVN                 +  L  I ++V  A GI+ RRGDTI++ ++ F    
Sbjct: 354 SVGVVVNSQ-------------LKNVNLDSIRELVQTAAGIDQRRGDTISVVAVPFHRPT 400

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           L      +  +              +  ++   L+ F  L  +RR   +           
Sbjct: 401 LGEEKAKERVYWPY----------IVGGVLIASLLVFSLLVFMRRRKQVPLPTPPTAVPP 450

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
              +       V    +                                S   +  + + 
Sbjct: 451 VPETMVTEEIRVKAKEVA-------------------------------SLEAVAELAKQ 479

Query: 538 NEERFAKILRKWARS 552
             ++ AKI++ W RS
Sbjct: 480 EPQKVAKIIKSWLRS 494


>gi|167043569|gb|ABZ08264.1| putative Secretory protein of YscJ/FliF family protein [uncultured
           marine microorganism HF4000_APKG2K17]
          Length = 560

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 114/560 (20%), Positives = 223/560 (39%), Gaps = 40/560 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+ D  LQF     SL   + + +   + + ++  ++  F  N P +  LY  +E+ D  
Sbjct: 31  ALSDVRLQFQDFFGSLSLAKRITILVALGIVLIGMVSMIFVANQPSWAPLYSNMELGDAA 90

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L E  I + ++  G +I V    V +AR+ LA + + +  S  G+       S G
Sbjct: 91  AIVEKLQENQIPYLLAPGGRTIMVEPHKVDQARLTLAKEKV-TPGSGVGFLDLFSTPSLG 149

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-I 180
            T F Q +    A EGE+AR I +I+ + +A+V + +P    F       TA++ +    
Sbjct: 150 ETEFQQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQEETTAAIALNLTS 209

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---IVQAI 237
           + +  K  E I HLVA+AV  L   +V + D +G LL+    + +  GK           
Sbjct: 210 SGAGRKQIETIIHLVASAVEGLSPRNVKITDQSGTLLSRGFSDTSASGKMNDNYSYKSRF 269

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           ++E+E  I + +   +G D  R  V A L  D + I+E + DPD     S ++  ++   
Sbjct: 270 ENELEAKIVRQIEEVVGKDRVRVNVSATLRFDRRTIKEELVDPDQTSVVSEQVVDESSTG 329

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             S P     V  N+P  + R+     ++    KK    N+E + + I       ++ RL
Sbjct: 330 TRSVPVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIVLESAVGEVVRL 386

Query: 358 SIAVVVNKGRLTEVLGR-----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           S++V+++  R   +          +    ++    I  +V AA G N +RGD++ + +M 
Sbjct: 387 SVSVLLDNRRSQILDESGISLGRTNTPWTEAEKETIIGLVKAAMGFNEKRGDSVFVGNMP 446

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F E  + +    ++    + ++    ++  +   +  L +    +  + +  +       
Sbjct: 447 F-EAAVEDDKVNEIEATRVRNKFILDIVRYVALGLAILSLIMFVIRPMVQRLSSKPEDLD 505

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            + G            +         I                              ++L
Sbjct: 506 LLMGMPATIGELEEEELEVPTERESGIP--------------------------PREKIL 539

Query: 533 HMIEINEERFAKILRKWARS 552
            + + +  + + ++  W R 
Sbjct: 540 EIAKQDPLKTSALIHTWLRE 559


>gi|163783983|ref|ZP_02178948.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880743|gb|EDP74282.1| Flagellar M-ring protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 522

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 120/524 (22%), Positives = 226/524 (43%), Gaps = 48/524 (9%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH 96
                  +  +Y  LY  L   D  ++   L E  I +++  NGS I VP   V   R+ 
Sbjct: 39  FFIYSLSSKENYAVLYTNLSPEDAGQVLTVLQEEKIPYKVEGNGSIILVPKDKVYDVRLK 98

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           LA++G+P S S  G+E+FD+    G+T F + I  +RALEGE+ RTI+ ++ ++ A+V+I
Sbjct: 99  LASKGIP-SGSTVGFEIFDE-PKMGITQFQENINYIRALEGELERTIRQLNAVIDAKVNI 156

Query: 157 VMPDMGSFRKIGARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
            MP    F +   +P ASV+I+         +  +AI  LV+ AVP L   +VTV D+ G
Sbjct: 157 AMPKESIFAREEDQPKASVLIKLAPGKDLTPEQVKAIVFLVSRAVPKLKPENVTVADNRG 216

Query: 215 KLLTA--NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ 272
           ++L+    E E     K+L + + ++ +IE N+   L+  LG D        E+      
Sbjct: 217 RVLSDVLEETETAKADKTLQLKRKLERQIERNVQSMLSKALGSDKVVVRATVEVETGQLH 276

Query: 273 IREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
            ++ +YDPD     S R  K+  +++            N+P + D      R L    K+
Sbjct: 277 QKDELYDPDKVAIVSERRIKEEVKTKQKSEIGPPGTSTNVPPIMD--TGQDRYLVEKKKE 334

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEVLGRSADQ--GKIDSYLAEI 388
           +   NY+++   I  +   +K++++S+ V+++     + +  G  + +   +    L + 
Sbjct: 335 DRTRNYDVSKSIINKSQPIFKIKKVSVGVLIDGKYQEIKDKNGNVSYKFIPRSKEELKQY 394

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVG 448
            +++ +A G + +RGD +TI S+ F +              ++  +    +   ++  V 
Sbjct: 395 EELIKSAIGFDPKRGDKVTIVSVPFEKKP------------EVAVKEKTDIRKIILLSVI 442

Query: 449 TLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDI 508
            +L   L L  L  +       +  VG           + V    +              
Sbjct: 443 GILFLTLLLITLALILKARKKPETAVGYGIPPETLQGMATVREAEIE------------- 489

Query: 509 FSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                           +   ++LL ++E N +  A +++ W + 
Sbjct: 490 -----------VGIEKEPEYIQLLKILEENPQIVANLVKTWIKE 522


>gi|119469985|ref|ZP_01612790.1| flagellar M-ring protein [Alteromonadales bacterium TW-7]
 gi|119446695|gb|EAW27968.1| flagellar M-ring protein [Alteromonadales bacterium TW-7]
          Length = 571

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/559 (16%), Positives = 216/559 (38%), Gaps = 23/559 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   +  S   +   R + L   + + + + +    +   P    L  K++  ++    
Sbjct: 27  EQKSGYLSSLNGVDLLRQVTLVIALGICLAIAIFIIIWARQPDMRPL-GKMQTEELIETL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I++++  +G+ + VP +     ++ +  +GL      SG ++  +   FG++ 
Sbjct: 86  DFLDAQKIEYQV--DGNVVLVPETEYQNIKLLMTREGL-EQGPTSGSDIIMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++        E ++ARTI+ ++ I  ARV + +P    F +   +P+A+V++       
Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRARVLLAIPKENVFARREKKPSATVVLTLKRGRS 202

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240
              +  +++  +VA+AV  L+   VTV D  G+LL +                 +  + E
Sbjct: 203 LDSEEVDSVVDMVASAVQGLEPARVTVTDQNGRLLNSGSQTSLAARSRKEYDIERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++    +  +  Y+PD    RS    ++      +
Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSAVEETQKRYNPDLPAVRSETTFEENNIGGLA 322

Query: 301 QPESA-----VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                       V  N+P V+ +      +  +   KE   NYE++T           + 
Sbjct: 323 VGIPGALTNQPPVNSNIPEVAGQGGAGSATSPSRTHKEATRNYELDTTISHKRQQTGVIR 382

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R+S++V V+        G +    +    L+ I +++    G + +RGD + + ++ F+ 
Sbjct: 383 RISVSVAVDYIPKVGENGETTMTPRSVEELSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                  +V +   D     F  +I  ++  +  +++    +  + +     D    E  
Sbjct: 443 EATDFDISVPLWEQD----WFMKIIRLVLGALVIIVLIMAVVKPMLKRLIYPDDTLEEYD 498

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             ++ +   I  +    L  + + A    + D      +L      +  +     +  ++
Sbjct: 499 EDALSAGVDIGDSTLDMLNKDFDSASIGFSSDGTLQLPDL------HGDEDLLKAIRALV 552

Query: 536 EINEERFAKILRKWARSEI 554
               E  +++++ W   + 
Sbjct: 553 ANEPELSSQVVKAWLTEDD 571


>gi|74055034|gb|AAZ95839.1| FliF [Aeromonas hydrophila]
          Length = 570

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/564 (15%), Positives = 203/564 (35%), Gaps = 29/564 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q        ++    R + L   + + + + +    +   P    L       ++    
Sbjct: 23  EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYSTQELVSTL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS--SSSNSGYELFDKVNSFGL 122
             L +  I + +   G S+ V +      R+ L   GL +   +SN G  +  K +SFG+
Sbjct: 82  DYLDQQKIPYEV--EGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGV 139

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           +  M+      + E ++A  I+    +  A+V + +P    F +   +P+A+V++     
Sbjct: 140 SQRMETERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGN 199

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239
                  ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + 
Sbjct: 200 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEV 259

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E +  I+  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S  
Sbjct: 260 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEE--NSAN 317

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLE--------NTDKKEEQSNYEINTKSIATTHDN 351
                      N P  +                      +KE   N+E++T         
Sbjct: 318 GSSGGVPGALSNQPPAASNIPQQATGPNADASAAASGRSRKEATRNFELDTTVSHIRRQM 377

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             + R++++V V+    T   G+   + +    L  + +++S   G +  RGDT+ + ++
Sbjct: 378 GGIRRMTVSVAVDYKSATAADGKVTREARTQPELDTLRRLLSGGLGFDVTRGDTLEVVAI 437

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F   +L N     +         F   +     ++  +++    +  + +     DA+ 
Sbjct: 438 PFNRPELENVAEAPIYEQP----WFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDARP 493

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                            ++      ++  +                  + +  +     +
Sbjct: 494 EGDLDLDNSIVLGGDDELSLLAAQAESEPVFGVRDGHLKLP-------DLHRDEDLLKAV 546

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
             ++    +  A+++++W  ++  
Sbjct: 547 RALVANEPDLAAQVIKEWVTNKDA 570


>gi|56460308|ref|YP_155589.1| flagellar MS-ring protein [Idiomarina loihiensis L2TR]
 gi|56179318|gb|AAV82040.1| Flagellar basal body M-ring protein [Idiomarina loihiensis L2TR]
          Length = 570

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/555 (17%), Positives = 202/555 (36%), Gaps = 27/555 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
                 +    R +I+   + + + + +    +     Y  L  +LE  ++      +  
Sbjct: 31  IMTMLGNFDMLRQVIVVLALAICVAIAVFIMLWAQESTYRPL-GQLETEELISTLDYMDA 89

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS-SSNSGYELFDKVNSFGLTSFMQE 128
             I++++   G+++SVP       ++ L   G+    S+N+G E+      FG++  ++ 
Sbjct: 90  NGIEYQV--EGNTVSVPEENYDAIKLQLTRAGVDYGNSTNNGSEILMSEPGFGVSQRLER 147

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186
              + + E ++AR I+ I  + AARV + +P    F +    P ASVM+          +
Sbjct: 148 ERLIHSREVQLARAIEEIKKVSAARVLLAVPKENVFARREKEPKASVMLNVRGGTSLSEE 207

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMN 244
              +I  +VA++V  L+   VTV D  G+LL +          S      Q  +      
Sbjct: 208 EVASIVDMVASSVTGLNTESVTVTDQAGRLLNSGSQSALAAKSSREYQIEQKREEAYLEK 267

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I+  L   LG DN+ + V   ++   ++  +  ++PD    RS    +   RS  S    
Sbjct: 268 IDSILIPVLGYDNYTAQVDVTMDFTQREETQRQFNPDMPAIRSEMTVE--NRSMGSAIGG 325

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTD------KKEEQSNYEINTKSIATTHDNYKLERLS 358
                 N P +                      +E   NYE++     T +    ++RLS
Sbjct: 326 IPGALTNQPPLDSDIPEEAGDGTAGGGATGSTHREATRNYELDNSVTYTRNQTGTIKRLS 385

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V VN   +T   G    Q +    +A I +++    G +  RGD+I + S+ F +   
Sbjct: 386 VSVAVNHEAITNEAGEGETQARSAEEIANIRRLLQGGLGFDINRGDSIEVVSVPFAQLPD 445

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
             +G   V         F      ++  +  +++    +  + +     ++   +     
Sbjct: 446 LGAGETPVWEEP----WFWRAFRLVMGALVIMVLILAVVRPMLKKLMNPESGVEDDADAF 501

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                     +       D  A+                  + +  +     +  ++   
Sbjct: 502 SDEESMGDETIDLLSSQFDESAVGFGAD-------GSLQLPDLHKDEDLLKAVRALVANE 554

Query: 539 EERFAKILRKWARSE 553
            E  +++++ W   +
Sbjct: 555 PELSSQVVKAWLNED 569


>gi|225849149|ref|YP_002729313.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643430|gb|ACN98480.1| flagellar M-ring protein FliF [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 534

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 118/565 (20%), Positives = 234/565 (41%), Gaps = 46/565 (8%)

Query: 1   MAI-LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLYVKLEV 57
           MA+  +Q+ Q         +    I++ +I + +++ ++     +     Y  LY  L  
Sbjct: 1   MAVDFNQIKQKVGEFLKDKKNLKYIVSGLIGLFLVVILSIVLLKSFHKEDYAVLYSGLSP 60

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            D   +  ALS+ NI +++  NG+ I VP   V  AR+ LAA+GLP S    G+E+F + 
Sbjct: 61  DDAGNVLTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGLP-SGKVVGFEIF-EE 118

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
              G T F + +  +RA+EGE+ RTI+ +  ++ A+V+I MP    F +      ASV+I
Sbjct: 119 PKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNISMPKDSLFVREDEEAKASVII 178

Query: 178 RAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLS 232
           +         +  +AI  LV+ AVP L   +VTV+D+ G++L+    E        K++ 
Sbjct: 179 KLWPDKDLTKEQIKAIVFLVSHAVPKLKPENVTVVDNRGRVLSDLIDENVSEASGDKTVE 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + + ++ ++E +I   LA  +G +        EL       ++ +YDPD     S R  K
Sbjct: 239 LKRKLEKQLEKDIQSMLAKVVGPERVVVKASVELETGKVNQKDEIYDPDKVAVVSERKIK 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +++  E +   +      N+P V +         +  +K +  +NY+++   I T    +
Sbjct: 299 ESETEEANTINAPPGTPTNVPPVMNT-PIFGGGGKKKEKSDITTNYDVSKSMIETQKPLF 357

Query: 353 KLERLSIAVVVN--KGRLTEVLGRSA--DQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            ++++S+ V+++     + +  G      + +    L     ++ +A G +  RGD +T+
Sbjct: 358 VIKKVSVGVMIDGKYKEVKDKDGNVKLEFEPRSPQELQSYENLIKSAIGFDPNRGDQVTV 417

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S+ F   +       Q + +  +                              +  +  
Sbjct: 418 ISVPFESLETQKQEVKQANIIQYI------------------------------IAGLLG 447

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                +    +L             +P+  +    + Q    +    + +       +  
Sbjct: 448 LVLLGLVVFLLLKTKKKKQETIIAPLPSGEVPSSLATQLSKIYEEEKELQPEFEKIPEYI 507

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
             LL + E N    A ++ KW + E
Sbjct: 508 K-LLEIAEENPVLIANLISKWLKEE 531


>gi|313683040|ref|YP_004060778.1| flagellar m-ring protein flif [Sulfuricurvum kujiense DSM 16994]
 gi|313155900|gb|ADR34578.1| flagellar M-ring protein FliF [Sulfuricurvum kujiense DSM 16994]
          Length = 572

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 113/572 (19%), Positives = 215/572 (37%), Gaps = 29/572 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS------PHYDNLYVK 54
           M       Q       L + + +I+ + +   I   +    + +         Y  L+ +
Sbjct: 1   MDFKTLFSQLVVFYGKLTQAQKIIIGTAVAGIIAFLVFLVVYTSEGKKGDNDGYQVLFEQ 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L   D +++   L +  I +RI    + I VP  +V K RI +A+ G+P      G+ELF
Sbjct: 61  LSGEDASKVIEQLEKDKIPYRIPRE-NVIEVPKEVVYKERIAIASLGIPKEGH-VGFELF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           DK   FG T+F QE+   RALEGE+AR+I S+S +  + V + +P    F +    P+AS
Sbjct: 119 DK-QEFGATNFDQEVKFRRALEGELARSIDSLSPVEKSSVSLALPKETLFVEEAVPPSAS 177

Query: 175 VMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGK 229
           VM++         K    I+ LVAAAVP L   +V ++++ G+ L  N+    +      
Sbjct: 178 VMVQLYPDRKLTPKQIRGIKKLVAAAVPKLTPENVALINAEGETLGDNDDASAMGELSSI 237

Query: 230 SLSIVQAIQHEIEMNINKALAA-FLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
                   + + E  I   LA    G D   + V  E +   Q      +DP++ V    
Sbjct: 238 QQQYKTKEEKKQEEKIINVLAPFIGGKDRVVAKVTIEYDFSEQSSTSEKFDPENVVRSEQ 297

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
              +  + +   Q         N+  V              +K    +NYE++     T 
Sbjct: 298 SSEEKREGAAPQQVGGVPGAVSNIGPVEGLAGGGGE---KFEKTTGTTNYEVSKTVSTTK 354

Query: 349 HDNYKLERLSIAVVVNKGRLTEVL------GRSADQGKIDSYLAEINKIVSAATGINSRR 402
            +  +++R++ AVVV+     +                 ++ +  I+ +V  + G + +R
Sbjct: 355 MEFARIKRMTAAVVVDGKYEPKKDASGQPTDEIEYIALDETQIQAIDALVKQSIGADEQR 414

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDI-LSRHFATVINALVFLVGTLLVTFLGLHALR 461
           GD +T+ + +F  ++        VS   + +S + A       +++  +++       + 
Sbjct: 415 GDQVTVRNFEFQMSKDGMRPKDAVSKTSLFISTYIAPFTPVFKYILVAIILFIAYKKIII 474

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                      E       +                 +     NQ     + N     + 
Sbjct: 475 PFAERMLEFSREEEEFEKPNLEIADDEDEDLAEKVQLMRKKVENQLGLGENFNE----DE 530

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                   ++  + E + E  A +++     E
Sbjct: 531 LKYDVLLEKVREIAEDHPEEIASLIQALIDEE 562


>gi|163800134|ref|ZP_02194035.1| flagellar M-ring protein [Vibrio sp. AND4]
 gi|159175577|gb|EDP60371.1| flagellar M-ring protein [Vibrio sp. AND4]
          Length = 583

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 106/566 (18%), Positives = 217/566 (38%), Gaps = 31/566 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  ++ Q +         R L+L++V+   +   +    + +S  +  LY + E  D+ 
Sbjct: 30  DVSKKIKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSFRPLYSQQERFDIG 84

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + VP   V + R+ LA++G+  +   +G +   + +S G
Sbjct: 85  EIVSVLESEGISYRMQEQNGQVLVPEGEVARIRMLLASKGV-KAKLPTGLDSLKEDSSLG 143

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
            + FM+       LEGE+ RTI S++ I  ARVH+ +P    F +      ++ +   ++
Sbjct: 144 TSQFMETARYRHGLEGELVRTIMSLNSIANARVHLAIPRQTLFVRQNTENPSASVMLELK 203

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 204 PGEDLKSEQVEAIINLVVGSVTAMKPEFVSVIDQYGRLLSADIASAEAGKVNAKYLEYQK 263

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
           +++ +I       L   +G  NFR  V A++N    +  + + D                
Sbjct: 264 SVEKQIIQRAADMLTPIVGPSNFRVQVAADMNFSQIEETQEILD---NAPVVRNEHTIQN 320

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P V+        S  +  + E    Y + +    T +   ++E
Sbjct: 321 NSIDQIALGIPGSLSNQPPVTGEAPTND-SQNSNARSEVNRQYAVGSSVRRTQYQQGQVE 379

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N     +           ++  ++I+ ++  A GI+  RGD++++ S +F  
Sbjct: 380 KLSVSVLLNSKVAPDG------VAWSEAEKSQISTMIMDAAGISDARGDSLSLMSFNFTP 433

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +      +       + +     +  ++  V  L + F  L  L       D    E+ 
Sbjct: 434 IEFDAPSAMPWWQDPTVQQ----PLRYVIGGVLGLAMIFFVLRPLIMHLTGADKPVQELE 489

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ-----SRINSYVSKQSDLR 530
                  P   +  T   +  + +     ++   + S  L              +     
Sbjct: 490 FAEPQEEPQYDNIQTREELEREELLNRKLSERGIAVSSGLDVSNEMLPPAGSPLEIQLKH 549

Query: 531 LLHMIEINEERFAKILRKWARSEIED 556
           L  +     ER A+IL++W       
Sbjct: 550 LQLIANEEPERVAEILKQWVNINEHS 575


>gi|319790420|ref|YP_004152053.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1]
 gi|317114922|gb|ADU97412.1| flagellar M-ring protein FliF [Thermovibrio ammonificans HB-1]
          Length = 532

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/564 (20%), Positives = 223/564 (39%), Gaps = 46/564 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-NSPHYDNLYVKLEVSD 59
           M + +   +           R ++L    L  ++          ++  Y  LY  L   D
Sbjct: 1   MELRELSDKLTAFLREKANPRNIVLVLGALTLVVFLSLVLVRSYSNQEYAVLYTHLSPDD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L +  I +++  +GS I VP   V + R+ LAA+GLP      G+E+FDK   
Sbjct: 61  AGEILTVLQQEKIPYKVEGDGSIILVPKDKVYEVRLQLAAKGLPH-GKVVGFEIFDK-PK 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G+T F Q +  +RALEGE+ RTI+ +  + +A+V+I +P    F +    P ASV++  
Sbjct: 119 LGITQFQQNVEYLRALEGELERTIEQLDAVRSAKVNIALPKDSIFVRPEQEPKASVLVDL 178

Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSI 233
                   +  +AI  LV+ AVP L   +VTV+D+ G++L+      N       K L I
Sbjct: 179 WPGRDLTPEQVKAIIFLVSHAVPGLKPENVTVVDTRGRVLSDLVESDNSTYAVSSKELKI 238

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            + ++ +IE  +   L+  LG          E+     + ++ +YDPD     S R  ++
Sbjct: 239 KRQLERDIERKVESMLSQVLGGGKVVVRASVEVETGKVETQKEIYDPDMTAVVSQRKVQE 298

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            + +   QP+ A     N+P V +        +   +KK+  +NY+++     +    ++
Sbjct: 299 KEVATQKQPQGAPGTTTNVPPVVNFGPNAK--VVQKEKKDVTTNYDVSKTIERSVTPVFR 356

Query: 354 LERLSIAVVVN--KGRLTEVLG--RSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           ++R+++ V+V+    ++    G        +    +    +IV +  G + +RGD +T+ 
Sbjct: 357 IKRITVGVLVDGRYEKVKGPKGTVEYKFVPRSPQEIKTYEEIVKSVIGYDPKRGDRVTVA 416

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           S+ F    L  +   +                                    +      A
Sbjct: 417 SVPFETQLLAGNKPKEEKGFPW------------------------------QYAAGVGA 446

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
               + G  ++       A            L  S ++  +  +     IN         
Sbjct: 447 LVAVLLGLLLMKLLKKPKAEAPPAGLQPGETLAQSLEEGLAARKEEIEEINLESDPIYLK 506

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
            ++ + +   +  + ++ KW R E
Sbjct: 507 -IVEVAKDYPDLISNVITKWMREE 529


>gi|145298346|ref|YP_001141187.1| flagellar MS-ring protein [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851118|gb|ABO89439.1| flagellar M-ring protein FliF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 569

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 89/563 (15%), Positives = 206/563 (36%), Gaps = 28/563 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q        ++    R + L   + + + + +    +   P    L       ++ +  
Sbjct: 23  EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYSTQELVKTL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS--SSSNSGYELFDKVNSFGL 122
             L    I + +  +G S+ V +      R+ L   GL +   +SN G  +  K +SFG+
Sbjct: 82  DYLDAQKIPYEV--DGKSVLVSAEKYADIRLRLTRAGLATNTDASNDGESILLKDSSFGV 139

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           +  M+      + E ++A  I+    +  A+V + +P    F +   +P+A+V++     
Sbjct: 140 SQRMETERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLSLKGN 199

Query: 183 -SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239
                  ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + 
Sbjct: 200 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPVSAQTRKEFAMQQKQEV 259

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E +  I+  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S +
Sbjct: 260 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTLEE--NSAS 317

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN-------TDKKEEQSNYEINTKSIATTHDNY 352
                      N P  +          +          +KE   N+E++T          
Sbjct: 318 GSNGGVPGALTNQPPAASNIPEEAAGGDGGAASSSGRSRKEATRNFELDTTVSHIRRQMG 377

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + R++++V V+   +    G    + +  + L  + +++S   G +  RGDT+ + ++ 
Sbjct: 378 GIRRMTVSVAVDYKSIAGADGAVTREARSQAELDTLRRLLSGGLGFDVTRGDTLEVVAIP 437

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F   +L N     +         F   +     ++  +++    +  + +     DA+  
Sbjct: 438 FNRPELENVADAPIYEQP----WFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDARPE 493

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                           ++      ++  +                  + +  +     + 
Sbjct: 494 GDLDLDNSIVLGGDDELSLLAAQAESEPVFGVRDGHLKLP-------DLHRDEDLLKAVR 546

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            ++    +  A+++++W  ++  
Sbjct: 547 ALVANEPDLAAQVIKEWVSNKDA 569


>gi|149189866|ref|ZP_01868146.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148836352|gb|EDL53309.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 582

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 212/567 (37%), Gaps = 32/567 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I  ++ Q +         R L+L++V+   +   +    + +S  Y  LY + E  D+ 
Sbjct: 29  DINAKVKQLWS-----SSQRNLVLSAVLAAIVAAIIVVALWSSSQSYRPLYSQQERFDIG 83

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L    I +R+ +    + V    V K R+ LAA+G+  +   +G +   + +S G
Sbjct: 84  EIVSVLESEGIAYRLQEQNGQVLVAEGQVAKIRMLLAAKGV-KAQLPTGLDSLKEDSSLG 142

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPTASVMIR 178
            + FM+       LEGE+ RTI S++ I  ARVH+ +P    F +        +  + ++
Sbjct: 143 TSQFMENARYRHGLEGELVRTIISLNAISNARVHLAIPRQTLFVRQQGEEPSASVMIELK 202

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                     EAI +LV  +V  +    V+V+D  G+LL+A+        +  K L   +
Sbjct: 203 PGEDLKPDQVEAIINLVVGSVTGMKPEFVSVIDQYGRLLSADVGSAEAGKVNAKYLEYQK 262

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ +I       L   +G  N+R  V A+++    +  + + D +              
Sbjct: 263 NVEKQIIQRAADMLTPIVGPSNYRVQVAADMDFSRVEETQEILDTNP---VVRNEHSIQN 319

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            +             N P V+        S     + E    Y + +    T +   ++ 
Sbjct: 320 NTIDKIALGIPGSLSNQPPVTGEVPTND-SQNTNARSELNRQYAVGSSVRRTQYQQGQIS 378

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +LS++V++N+                 +  A+I+ +++ A GI++ RGD++++ S +F  
Sbjct: 379 KLSVSVLLNESAAPNG------TAWTPAERAQISTMITDAVGISADRGDSLSLMSFNFTP 432

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            ++     +       + +     +  ++  +  + + F  L  L       D +  E+ 
Sbjct: 433 IEIEAPPAMPWWQDPTVQQ----PLRYVIGGMLGMAMIFFVLRPLIMHLTGADKRGNELE 488

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS------RINSYVSKQSDL 529
                      +  T      + +     ++     + +                +    
Sbjct: 489 FAEPQEEEYQENIQTREEREREEMLNRRLSEKGIESTSSGLDASSDMLPPPGSPLEIQLK 548

Query: 530 RLLHMIEINEERFAKILRKWARSEIED 556
            L  +     ER A++L++W       
Sbjct: 549 HLQLIANEEPERVAEVLKQWVNVNENS 575


>gi|323496555|ref|ZP_08101609.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326]
 gi|323318399|gb|EGA71356.1| flagellar MS-ring protein [Vibrio sinaloensis DSM 21326]
          Length = 582

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 98/557 (17%), Positives = 208/557 (37%), Gaps = 29/557 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 42  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 100

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  +++++  +G++I VP+S     R+ +   GL     N+G ++  +   FG++  ++
Sbjct: 101 DQQKMEYKL--DGNTILVPTSEYNSLRLDMVRAGLNQEK-NAGDDILLQDMGFGVSQRLE 157

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                 + E ++++ I+ +  +  ARV + +P    F +     +ASV +          
Sbjct: 158 LERLKLSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQ 217

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243
           +  +++  +V++AVP +    +TV D  G+LL++   +     +       +  +  +  
Sbjct: 218 EEVDSVVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRD 277

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  EL+    +     +DP++   RS    +D          
Sbjct: 278 KIDSVLIPILGFGNYTAQVDIELDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVV--A 335

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                  + + +  KE   N+E++T           + R
Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGSGTGQGSVHKEATRNFELDTTISHERRQTGVVNR 395

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            ++AV +    +     G +  Q   ++ LA I +++  A G +  RGD + + SM F E
Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSEADLASIRQVLIGAVGFSEARGDLLNVLSMQFAE 455

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            ++     V +      +       +ALV +        + +  L R             
Sbjct: 456 PEVEVMADVPIWEHPNFNDWVRWFASALVII--------VVVLVLVRPAMKKLLNPASDE 507

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               L  P        G        L+      F  S +L    N +  +     +  ++
Sbjct: 508 DDDQLYGPDGMPIGADGETSLIGSDLEGGELFEFGSSIDLP---NLHKDEDVLKAVRALV 564

Query: 536 EINEERFAKILRKWARS 552
               E  A++++ W + 
Sbjct: 565 ANEPELAAQVVKNWMQD 581


>gi|34498454|ref|NP_902669.1| flagellar MS-ring protein [Chromobacterium violaceum ATCC 12472]
 gi|34104309|gb|AAQ60668.1| flagellar M-ring protein [Chromobacterium violaceum ATCC 12472]
          Length = 542

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 105/541 (19%), Positives = 201/541 (37%), Gaps = 17/541 (3%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
              R L+   ++ + + +      + +   Y  ++   E      +  AL    I +R+ 
Sbjct: 10  NAWRYLLPIVLLAIGLSVVATLWLWRDDASYKPVFGAQEKVSGADMMAALDAEKIPYRVH 69

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
                + VP   + +AR+ LAA+G+ +    +G EL DK +  G++ F+Q++   R LEG
Sbjct: 70  PQTGQVLVPDGDLARARMQLAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRGLEG 128

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHL 194
           E+ ++IQ++  + +ARVH+ +P   SF          +  V ++       +   A+  L
Sbjct: 129 ELVQSIQALDPVRSARVHLSLPRSTSFVTAGGEKGSASVVVTLKPGQQLSSEQIAAVVKL 188

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           VA +V +LD   VT++D  G LL+A+    +  I G +    +  + E   N    L   
Sbjct: 189 VAGSVASLDPSQVTLVDQAGNLLSAHVDLSDGGIAGNNSEAARRFRDEALQNARDLLTPA 248

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           LG  NF+ +V A+++ D  +     Y    +  +    +   + S             N 
Sbjct: 249 LGAGNFKVSVTADVDNDRVEETREKY---GEAPKVTNEASREETSTERMALGVPGSLSNR 305

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           P  +D   P         K      Y  +            L RLS+AV +N+       
Sbjct: 306 PVNTDSSSPAAD-KAGNSKNAVTRQYAYDRNITNIKRARGTLRRLSVAVALNQAAAPGGK 364

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
           G         + LA I+K++    GIN+ RGD + ++++ F +         Q       
Sbjct: 365 G------WQPAELANIDKLLRNGLGINAERGDVLAVSTLRFAQPTPAEPFWEQPETWFEG 418

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
           +R  A  +  L+  +            L     ++D    E+                  
Sbjct: 419 ARWAAYAVALLLAYLLLARPLLKLARQLAER-KLNDYTPDELDVTPDDPLLDNRPLREAA 477

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                 ++    +  +     N                L  +     ER A+++++W ++
Sbjct: 478 SQRQAALSAAPGDSPVVPLLENYDLPPAGSPVDVMVEHLKGLAAKEPERVAEVVKQWVQN 537

Query: 553 E 553
            
Sbjct: 538 N 538


>gi|255985845|ref|YP_354394.3| flagellar MS-ring protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389308|gb|ABA80493.1| putative flagellar M-ring protein [Rhodobacter sphaeroides 2.4.1]
          Length = 509

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 114/530 (21%), Positives = 210/530 (39%), Gaps = 23/530 (4%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
               +   +  +        P    LY  L+      +  AL      + +   G S+ V
Sbjct: 1   MGATVAMFLAVLGLSQLAGRPPMALLYAGLQGPAAGEVVTALEAQGAAYEVR--GDSVYV 58

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
            ++   + R+ LA +GLP++ + +GYEL D ++ FG TS M +   +RA EGE+ARTI +
Sbjct: 59  EAARRDEIRMKLAGEGLPATGA-AGYELLDGLSGFGTTSQMFDAAYLRAKEGELARTILA 117

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMG 205
              + AARVHI  P    FR+      +  +  +        A A +HLVA+AV  L   
Sbjct: 118 SPQVKAARVHIAQPAAQPFRREQRPTASVTVTTSGGAVTADQARAFKHLVASAVAGLQPE 177

Query: 206 DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           DV+V+DS   L+ + + +           ++   E+  N+ + L A +G       V  +
Sbjct: 178 DVSVIDSVMGLIRSGDEKDGATAA----GESRAAELRSNVERLLEARVGPGRAVVEVSVD 233

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS 325
           +    + I E  +DP  +V  S    + +  S    P+  VTV  N+P    +     +S
Sbjct: 234 VETARESIVEKSFDPKGRVPISSETQEKSSNSTEPSPD--VTVASNLPEGDAKGGTGGKS 291

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
             +T +  E  N+E++            + RL++AV+V+  +     G    + + +  L
Sbjct: 292 --STSETREMVNFEVSQTQRELMRQPGAIRRLTVAVLVDGIKTVADDGTVGWEPRPEEEL 349

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
           A + ++V +A G++  RGD +T+ S+ F       +         + +    ++I   V 
Sbjct: 350 AVLRELVGSAVGLDESRGDRLTLRSLAFETPPEAGTLAETGFLSRLGAFDLMSLIQIGVL 409

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
            +  L++    +  +        A    +         P  +                  
Sbjct: 410 ALVALILGLFVVRPVLTAPPRPPAAPQPLALPGYEGGEPALTGEIDDSG----------- 458

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            D+        + ++         RL  +IE  +    +ILR W   + E
Sbjct: 459 -DLPDFPMVSSAPLDLDEEADPVARLRRLIEERQAESVEILRGWMEPQRE 507


>gi|254506888|ref|ZP_05119027.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16]
 gi|219550173|gb|EED27159.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus 16]
          Length = 582

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/557 (17%), Positives = 207/557 (37%), Gaps = 29/557 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 42  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 100

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  +D+++  +G++I VPSS     ++ +   GL     N+G ++  +   FG++  ++
Sbjct: 101 DQQKLDYKL--DGNTILVPSSEYNTLKLDMVRAGLNQEK-NAGDDILLQDMGFGVSQRLE 157

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                 + E ++++ I+ +  +  ARV + +P    F +     +ASV +          
Sbjct: 158 LERLKLSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLATGANLKQ 217

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243
           +  +++  +V++AVP +    +TV D  G+LL++   +     +       +  +  +  
Sbjct: 218 EEVDSVVDMVSSAVPGMKPNRITVTDQHGRLLSSGSQDPASAARRKEHELERKQEQALRD 277

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +L+    +     +DP++   RS    +D          
Sbjct: 278 KIDSVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVV--A 335

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + +  KE   NYE++T           + R
Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGTGLGQGSVHKEATRNYELDTTISHERRQTGVVNR 395

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            ++AV +    +     G +  Q   D+ L+ I +++  A G +  RGD + + SM F E
Sbjct: 396 QTVAVAIKNRAIVNPDTGETTYQPLSDADLSSIRQVLIGAVGYSEARGDLLNVLSMQFAE 455

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            ++     V +      +       +ALV +        + +  L R             
Sbjct: 456 PEVEVLQDVPIWEHPNFNDWVRWFASALVII--------VVVLVLVRPAMKKLLNPASDD 507

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               L  P        G        L+      F  S +L    N +  +     +  ++
Sbjct: 508 DDDQLYGPDGLPIGADGETSLIGSDLEGGELFEFGSSIDLP---NLHKDEDVLKAVRALV 564

Query: 536 EINEERFAKILRKWARS 552
               E  A++++ W + 
Sbjct: 565 ANEPELAAQVVKNWMQD 581


>gi|148260475|ref|YP_001234602.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5]
 gi|146402156|gb|ABQ30683.1| flagellar M-ring protein FliF [Acidiphilium cryptum JF-5]
          Length = 520

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 131/553 (23%), Positives = 239/553 (43%), Gaps = 38/553 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   +  +LG  ++  + +V +  + L  A            LY  L + D + I+  
Sbjct: 1   MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A+I + I + G S+ V  + + +AR+ LA   LP + S++G+ +FD  N    +SF+
Sbjct: 61  LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLP-AGSSNGFAIFDHKNPLLGSSFL 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184
             I   RAL+ E+ RTI  I G+ A+RV +V+P    F    A   ASVM+      P  
Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLNTAPAQASVMLSLAGVGPLD 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIE 242
           ++S EAI +LVA+AVP L   +++++D+ G LL          +  +  ++ Q+ + ++ 
Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   LAA +G +  R      ++ D  +     Y+P+ +V RS + ++    S +S  
Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTRSK-SSRSSGT 298

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              V+V  N+P  +  K   P+ L+   K  + +NYEI+       H   ++ R+S+AV+
Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           ++  + T   G+     +  + +A+I K+V  A G +  RGD + + S+ F  N+L  S 
Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
              +    + S     ++  LV     +    +    + R                    
Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLVTAAIGIAALLVVFRPMVRRII----------------T 461

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           PP ++     L+   N A+        +                    +  +I+ + E  
Sbjct: 462 PPENTTAEPALLAEQNGAIAGPATTEET---------------NPVKVIADLIDRHPEAS 506

Query: 543 AKILRKWARSEIE 555
             ILR W   E  
Sbjct: 507 VAILRDWLGQEGA 519


>gi|258404702|ref|YP_003197444.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692]
 gi|257796929|gb|ACV67866.1| flagellar M-ring protein FliF [Desulfohalobium retbaense DSM 5692]
          Length = 504

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/503 (23%), Positives = 215/503 (42%), Gaps = 29/503 (5%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
              +      R R L L  V L+ + +F           Y  LY  +   + + +   L 
Sbjct: 17  SLIQRIQDWPRRRKLSLLVVGLLCVAVFTFLILQARVADYQLLYADMTQQEASSVVDWLQ 76

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           ++N+ +++ D GSSI VP+  V K R+ LA  GLP      G+E+FD+   FG+T F Q+
Sbjct: 77  DSNVSYQLRDQGSSIYVPAGQVYKTRLDLAGDGLPQ-GQGVGFEIFDQ-QRFGVTQFTQQ 134

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYK 186
           +   RAL+GE+AR++ +++ + +ARVH+V+P+    R+   +  ASV++           
Sbjct: 135 VNYQRALQGELARSVATLTSVQSARVHLVLPERQFLREQQEKAKASVVVEFAPGQGLDSN 194

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQHEIEM 243
             + I  LV+ +V  +   +VTV+DS G +L+     +    I  + L   QA++ + E 
Sbjct: 195 QIKGIIRLVSGSVEGMAANNVTVVDSQGNVLSGGEEEDSGSPISPEKLEYKQAVEGQYEQ 254

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
                L    G +     V A ++  ++   E +YDPDS V RS + S+           
Sbjct: 255 RAQALLDRVFGPNKALVRVTAAIDFVSKHTTEELYDPDSIVPRSEKTSE----------- 303

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                  N    +  +       + + +  E  NYEI+      T     ++ LS+AV+V
Sbjct: 304 ------SNSGTTAREETEGNAGGQRSSESTETVNYEISRTVNEITKTMGGVKNLSVAVLV 357

Query: 364 NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
            +  L       A +G     L     +VS+A G+   RGD+I + +M   E    +SGT
Sbjct: 358 GQQFLQNKGNGGAAEGHSVESLQR---LVSSALGLQPDRGDSIEVVAMPVQEQAGLSSGT 414

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
              +   +    +   +   +  +G +L  FL +  + +    +  +  +   +      
Sbjct: 415 SANAGFSL--YDYLPFVKYGLIALGFILAYFLLVRPVLQTFRSEVTEHYKTVDELEGEYR 472

Query: 484 PISSAVTTGLMPNDNIALDSSNQ 506
              +  T  L    N +  +  Q
Sbjct: 473 EKVTDPTEQLRQEINHSEVTPAQ 495


>gi|94968680|ref|YP_590728.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550730|gb|ABF40654.1| flagellar M-ring protein FliF [Candidatus Koribacter versatilis
           Ellin345]
          Length = 529

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 117/551 (21%), Positives = 222/551 (40%), Gaps = 32/551 (5%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           Q  Q      SL  T+ L LA   L    L       +  P    LY  L+  D   +  
Sbjct: 10  QGKQIANFLRSLTGTQKLWLAFAGLTVTTLLYVFVTMLAKPEMKPLYSGLQAQDAQALGS 69

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L+   I+++IS +G+S+SV    +  AR+ +A+ G P S    G+ELFDK  ++G + F
Sbjct: 70  KLAAQKIEYQISPDGTSVSVAVDKLDSARLLVASDGGPKSG-RMGFELFDK-PNWGSSDF 127

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            +++   RALEGE+ RT+ +I G+ A RVH+V+P    F        ASV+++       
Sbjct: 128 SEKVNYQRALEGELERTLSTIDGVEAVRVHLVLPRESLFADKREEAKASVILKLRGAMSP 187

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
            S  AIR  +A AV  L    VTV+D+   L                +       +   +
Sbjct: 188 NSDVAIRRFLAGAVEGLRPEGVTVIDAENNL-----PIGKTSSDGSGVESERDQALAKEL 242

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + L   +GV   R++V  E ++ +    +  YDP+S    +++ S++         +  
Sbjct: 243 VRTLEPIVGVGGARASVHVEYDVTSGDETQETYDPNSTAALTMQKSEETVGGT--LAQGV 300

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                N+P+          +   + K E  + Y +N     T     +++R++ A++V+ 
Sbjct: 301 PGTASNIPNTQSPSKSTNSADSQSSKSESGT-YAVNRVVRHTLLPAGRIKRITAALLVDD 359

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN-QLFNSGTV 424
             +T+ +G ++   +    L +I+ +  A+ GIN  RGD + + ++ F EN         
Sbjct: 360 ADVTDAMGNTSRAKRSPEELKKIDSLARASLGINDARGDVLAVENLSFHENKPEVLVPLT 419

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           ++  +  + + F+  +   +  +  L+V  + L  +RR   +   +         +    
Sbjct: 420 KLDKVARVGKQFSWTLRYALIALLFLIVYVVVLRPVRRQVVLSLKQLPSRPANDAVLNGN 479

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
               +  G+   D                          +     +L+   +       +
Sbjct: 480 TGKVLPQGVESADPAV---------------------RQAATLKKQLIEKAKAEPASAGQ 518

Query: 545 ILRKWARSEIE 555
           +++ W R E  
Sbjct: 519 LVQSWLREEEA 529


>gi|301168113|emb|CBW27699.1| flagellar basal-body M-ring protein [Bacteriovorax marinus SJ]
          Length = 554

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 121/566 (21%), Positives = 237/566 (41%), Gaps = 25/566 (4%)

Query: 2   AILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
             L+++   F +   SL   + + L S+    +  F+    + +    D LY +L   D 
Sbjct: 3   DFLEKIIRNFTEFFNSLDLNKKIGLVSIAAFIVACFVGIVIWASKTRMDVLYTELNREDS 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I+V L E  I + +S++G +IS+P  ++ K R+ +A  G+  S    GYE+FDK  SF
Sbjct: 63  KKIAVLLEEKKIPYEMSNDGKTISIPEELINKWRLEIATLGVNFSG-TVGYEVFDK-QSF 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA- 179
           G TSF+Q++ + RALEGE+ +TI+ I G+  ARVH+ +P+   F      P+ASV++   
Sbjct: 121 GTTSFVQKVNKQRALEGELVKTIKYIRGVKRARVHLSIPESSPFVSEKKAPSASVVVDLE 180

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQA 236
                     + +  LV++++  +   +V +LD  GK L+ N  +         +++   
Sbjct: 181 RGVTLTPDEIKGVASLVSSSIDGMRNENVVILDDRGKKLSENIGDPMTAYTANRMALEGK 240

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +  + E  I   L+  +G     + V   L+       +  +D ++K   S   +     
Sbjct: 241 VNRKYEKQIEDILSKVVGAGKVIAKVTVNLDFTESVSTKTEFDGENKAVLSEVSNTQKLN 300

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                P+       N+P    +    P +  N DK     NY + +K   + +    + +
Sbjct: 301 GSRPSPQGIPGARSNLPGEQPQPGI-PETRNNVDKSLATRNYNVPSKVTKSKNPTAGIRK 359

Query: 357 LSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +S AV+++  R+     +    +  +   ++ LA  + IVS+  GI++RRGD I I +M+
Sbjct: 360 ISAAVMIDGRRVQVKGADGAISTQYERWSEADLANFSAIVSSTLGIDARRGDQIVIKNME 419

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F   Q   +    +            ++  L   +   L  FL +    +    +  +  
Sbjct: 420 F--AQEDMASIEAMMREKENRELIKNIVKYLTVGLAITLFFFLVVRPFIQWVTDNTVETV 477

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E      L       A        D +       +      N+              +++
Sbjct: 478 EDFLPKTLEELEKVQANQKLPGLEDALPQIEEKLNPEKIEGNML-----------REKII 526

Query: 533 HMIEINEERFAKILRKWARSEIEDRY 558
            ++E N  + A+++ +   ++  D+ 
Sbjct: 527 SLVEGNPAKAAQVIHEIIHAQESDKQ 552


>gi|126734120|ref|ZP_01749867.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2]
 gi|126716986|gb|EBA13850.1| flagellar M-ring protein FliF, putative [Roseobacter sp. CCS2]
          Length = 526

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/546 (23%), Positives = 215/546 (39%), Gaps = 27/546 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    K  ++L   R +IL  V  V  M  +       +     L+  LE      +  A
Sbjct: 1   MENLGKVWSALSIQRRIILIVVTGVVFMAVLLLARGAGTKDMSLLFGGLEPRAAGDVVTA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + +   G++I VP+      R+ LA QGLP++ S  GYEL D ++ F  T+ M
Sbjct: 61  LDQQGVAYEVR--GNAIYVPTVQRDGLRMALAGQGLPATGSQ-GYELLDSLSGFSTTAQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   I AARVHI  P    F+   ++  A  +  A      +
Sbjct: 118 FDAAYWRAKEGELARTIVASPHIRAARVHISTPSQRPFQAAQSQTAAVTVTMAGTTLSTQ 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
             +A++ L+ AAVP L   DV V+D  G LL+  +     +             +     
Sbjct: 178 HLKALQFLIGAAVPGLSPADVAVIDDEGGLLSEADTNSAGMNG-----DNHAENLRKRAE 232

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + LAA +GV N    V  +  ++T+ I E   DPDS++  S  +++ +  S  S+    V
Sbjct: 233 RLLAARVGVGNAVVEVSVDQVLETEMITERRVDPDSRIAISTDVTESSGNSTDSR-GGDV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P           S     +    +NYE++      T     + RL++AV+VN  
Sbjct: 292 TVASNLPDGDAGARSGSASN-ENSESRTLTNYEVSQTERQLTKAPGAIRRLTVAVLVNDL 350

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
             T   G +    + +  LA +  +V++A G++  RGD +T+ SM F   +   +     
Sbjct: 351 VDTAADGTTTTTPRTEGELAALEDLVASAVGLDVDRGDVLTLRSMPFEPFEPVGTAATGP 410

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           +    L      +I   V     L++    +  +        A+         +   P  
Sbjct: 411 A--ASLPLDMMQLIQIGVLAAVALILGLFVVRPILASSGASAAQLSIEEQAEPIDISPPM 468

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +         D I       D                      RL  +I   E    ++L
Sbjct: 469 AMAMDDNALGDFIDNGLLGMDA---------------DDDPVARLKRIIADREPETLQVL 513

Query: 547 RKWARS 552
           + W   
Sbjct: 514 QNWIEE 519


>gi|117928049|ref|YP_872600.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B]
 gi|117648512|gb|ABK52614.1| flagellar M-ring protein FliF [Acidothermus cellulolyticus 11B]
          Length = 533

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/560 (21%), Positives = 221/560 (39%), Gaps = 39/560 (6%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +   L +           + ++ A ++L  ++  +  R +   P Y  L+  L  SD 
Sbjct: 1   MNVRAILDRIRAVFGEFTAGQKMVTALIVLALVIGAVLFRSWAAKPSYAPLFSNLAASDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I+  L+     +R++D GS+I VP   V + R+ +A   LP+SS  SG+ L DK    
Sbjct: 61  AAITDKLNSLKEPYRLADGGSTILVPQKDVYQLRLDMAKANLPASS-QSGFSLLDK-GGI 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
             + F Q +   +ALE E+A+TI++I+G+ +A V+IV+P    F +  ++PTASV++   
Sbjct: 119 TTSEFQQNVAYQQALESELAKTIEAINGVQSAIVNIVLPQTDVFTQDSSKPTASVLVTTQ 178

Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---SLSIVQ 235
                  +  +AI HLVA++V  L+  DVTV DS G +L+A  M+  +            
Sbjct: 179 PSSTLTPEQVQAIVHLVASSVEGLNPADVTVADSQGHVLSAPGMDGQLSAASTLQDQQTA 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY---DPDSKVERSIRLSK 292
           A +  +   +   L   +G  +    V A LN DT+      Y    P +      +   
Sbjct: 239 AYEQRVAQAVQNLLQPLVGPGHVVVQVNAALNFDTKSTTSETYLQPSPGTTPIPLSQSWS 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
               S T+Q  + +    N+   +    P          +    +  I            
Sbjct: 299 YETYSGTNQAATGILGPDNIAVPTPSPSPG-----TYQSQSATVDNAIGRVVEEVKTAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            +ERLS+AV+++      V             L ++  +V++A G+ + RGD++++ +M 
Sbjct: 354 SVERLSVAVLLDSAAAKNVN------------LTDVKNLVTSAAGVQTSRGDSVSVATMP 401

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  +Q         +     S +   ++      V  L+V  +    LRR     +    
Sbjct: 402 FDTSQQAAEKKALAAAQKAQSMN--KLVGYAKDAVIALIVLGIIFFFLRRAKKAAEVSPI 459

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               + +        A   G    +   + S  +                        + 
Sbjct: 460 LSLAERVELEEARRRAALGGGDGAERKEIPSGQKPADRLEITTPLAAE----------IG 509

Query: 533 HMIEINEERFAKILRKWARS 552
            ++E   E  A++LR W   
Sbjct: 510 ELVERQPEEVAQLLRGWLAD 529


>gi|51246508|ref|YP_066392.1| flagellar M-ring protein (FliF) [Desulfotalea psychrophila LSv54]
 gi|50877545|emb|CAG37385.1| related to flagellar M-ring protein (FliF) [Desulfotalea
           psychrophila LSv54]
          Length = 545

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 234/551 (42%), Gaps = 41/551 (7%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             FF        +R L L +V+++ +  F        +     LY  L  +D   ++  L
Sbjct: 29  KNFFTLLRDWPLSRQLSLGAVLILCLAAFATIIIQTRTVDQQLLYANLSATDAAAVTEWL 88

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I + + D+G S+ + S+ + +AR+ LAA GLP S    G+E+FDK N F LT+++Q
Sbjct: 89  KGQKIPYSLKDSGKSVWIGSNKIYQARLDLAANGLP-SGGGVGFEVFDKQN-FALTNYVQ 146

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185
           +I   RAL+GE+ARTI S++ I + RVH+ +P+   F+    + TASV++          
Sbjct: 147 KINYSRALQGELARTISSLAPIESTRVHLAIPEKRLFKNQQKQATASVILSLVPGKTLSQ 206

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEIE 242
           +  E I +LVA +VP L+  +V VLDS+G +L   E       +    L+  + I+ ++E
Sbjct: 207 EQVEGIAYLVAGSVPGLETDNVKVLDSSGVILGDREQNGGDRALSSDMLAFQKEIETQME 266

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
           M     L   +G D+    V A ++    +  E  +D D  V RS +   + + S  ++ 
Sbjct: 267 MRAQDLLTRTMGADHALVRVTATVDFAKVEKTEEFFDADDPVIRSEQ--INNESSRGAEA 324

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                VE N+     +    P ++    K    +NYEI+       +    +++LS++V+
Sbjct: 325 GGIPGVESNLQGTQKKSGTGPSAV----KNGRTTNYEISKTISHIVNPVGTVKKLSVSVL 380

Query: 363 V-NKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V ++ +L       +      + L  +  +V++A G+ + RGD I + SM F ++     
Sbjct: 381 VADRQKLDPDTQEPSYTPFSTTELKALENMVASAIGLVATRGDVINVISMPFFQDPQEFE 440

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                +    L R+   ++  L+ L+    + FL +  + +    +  +  +   +    
Sbjct: 441 TDQDDTM--ELVRNSMPLVKYLLALLAIFFLYFLLVRPILKTVKGEVLQHNKTVDEMEKE 498

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               +        P   + +  +N        +                           
Sbjct: 499 QQRRNQEKKEESTPLPPLDIALANIRQEVMQEHTP------------------------- 533

Query: 542 FAKILRKWARS 552
            A I++ W   
Sbjct: 534 TAFIVKNWIHE 544


>gi|83944186|ref|ZP_00956642.1| flagellar M-ring protein [Sulfitobacter sp. EE-36]
 gi|83845053|gb|EAP82934.1| flagellar M-ring protein [Sulfitobacter sp. EE-36]
          Length = 548

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 140/550 (25%), Positives = 247/550 (44%), Gaps = 24/550 (4%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           ++L    +  ++L +     V  P Y  LY  L ++  N I   L+ A  +  +S++G+S
Sbjct: 1   MMLGGAGIGVVLLMILGIGAVTRPDYAPLYSNLSITSANSIEATLANAGFNAMVSEDGTS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP     +AR+ LA  G+P      G+ELFD+ +   + SF+Q+I ++RA+EGE+AR+
Sbjct: 61  ISVPRGDAVRARMVLAETGMPIDGDP-GWELFDESSGLAMNSFLQKINKMRAMEGELARS 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVP 200
           IQ++ GI +ARVH+V+PD   F +    P AS+++R         K A A+ +LVA+AV 
Sbjct: 120 IQTLDGISSARVHLVLPDREPFSRDAPAPRASIILRPESGRAVTRKQAVAVSNLVASAVA 179

Query: 201 NLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS 260
           +LD+  VTVL ++G+ + A   + +  G   S    I+  +   I   L A +G  N R 
Sbjct: 180 DLDISRVTVLSASGETILAEGPDGSSQGGVQSAKAGIEDRLSQEIQNILTARVGAGNARV 239

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V  EL    + I E  YDPD +V RS     + Q          V VE N+P       
Sbjct: 240 HVNVELTTQREVIVEQTYDPDQQVVRSTETKSEDQTGTKE--AGNVGVENNIPAALAD-G 296

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
               +     + +E   YEI         +   + R+S+AV+VN     +         +
Sbjct: 297 NGAGTSTRRSEADEIVQYEIGNTRREIVREAGDVRRMSVAVLVNGIYNVDGS-DVIYAER 355

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               LA + ++V  A G ++ RGD++++ SM F++  +     +  S  D LS +  +++
Sbjct: 356 TPEELARLGELVKTAVGFDTTRGDSVSVDSMRFMDYSMDLGDPIDKSIGDELSENVVSIV 415

Query: 441 NALVFLVGTLLVTFLGLHALRRL--------------HNIDDAKKGEVGGKSILSPPPIS 486
             ++ L+   L+   G+  + R                  + A +          P    
Sbjct: 416 RGVLALLVVGLILVFGVRPMLRKFSEGDQLNSYEDPALTAEKAAEPAALTAEGQRPKLPG 475

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNL---QSRINSYVSKQSDLRLLHMIEINEERFA 543
           +      +  D+  L  ++ DI +        +  I   + K+    +  + +   +   
Sbjct: 476 TTPAVADIAEDDDPLTITDDDIEAAEVAEYVRKEGIRGNLHKKKIETIQQLADEKPQEVL 535

Query: 544 KILRKWARSE 553
           +++R W  +E
Sbjct: 536 RVIRSWLPAE 545


>gi|330828799|ref|YP_004391751.1| flagellar M-ring protein FliF [Aeromonas veronii B565]
 gi|328803935|gb|AEB49134.1| Flagellar M-ring protein FliF [Aeromonas veronii B565]
          Length = 569

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/563 (15%), Positives = 209/563 (37%), Gaps = 28/563 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q        ++    R + L   + + + + +    +   P    L       ++ +  
Sbjct: 23  EQKSSALGFLSNTDVLRQITLILGLAICLAIAVFILLWGKEPDMRPL-GTYTTQELVKTL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP--SSSSNSGYELFDKVNSFGL 122
             L +  I + +  +G S+ V +      ++ L   GL   + S+  G ++  K +SFG+
Sbjct: 82  DFLDQQKIPYEV--DGKSVLVNAESYPTIQLALTRAGLANATDSNIGGEDILLKDSSFGV 139

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181
           +  M+      + E ++A  I+    +  A+V + +P    F +   +P+A+V++     
Sbjct: 140 SQRMESERLKLSRERQLASAIEQFQNVAKAQVLLAIPKDNVFARNERKPSATVVLNLKGA 199

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQH 239
                  ++I  +VA+AV  L+   VTV D  G+LL +   +       K  ++ Q  + 
Sbjct: 200 ALGQGEVDSIVDMVASAVHGLEPTRVTVTDQNGRLLNSGSQDPISAQTRKEFAMQQKQEL 259

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E +  I+  L   LG DN+ + V   L+   Q+     Y+PD    RS    ++   S +
Sbjct: 260 EYKQKIDAILIPVLGADNYTAEVDLSLDFSQQEQTRKTYNPDLPAVRSEMTMEE--NSAS 317

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLEN-------TDKKEEQSNYEINTKSIATTHDNY 352
                      N P  +          +          +KE   N+E++T    T     
Sbjct: 318 GSNGGVPGALSNQPPAASNIPEEATGGDGASAAASGRSRKEATRNFELDTTVSHTRRQMG 377

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + R++++V V+   +    G    + +  + L  + +++S   G +  RGDT+ + ++ 
Sbjct: 378 GIRRMTVSVAVDYKAVPGADGAVTREARTQAELDTLRRLLSGGLGFDVTRGDTLEVVAIP 437

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F   +L     V +         F   +     ++  +++    +  + +     DAK  
Sbjct: 438 FNRPELDTVAEVPL----YDQPWFWRAVRIAASVLVIIVLIVTVVRPMLKRLLYPDAKPE 493

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                   +       ++      +N  +                  + +  +     + 
Sbjct: 494 GEVDFDNHTVLGGDDELSLLSAQVENDQVFGVRDGQLKLP-------DLHRDEDLLKAVR 546

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            ++    +  A+++++W  ++  
Sbjct: 547 ALVANEPDLAAQVIKEWVTNKDA 569


>gi|326403668|ref|YP_004283750.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301]
 gi|325050530|dbj|BAJ80868.1| flagellar M-ring protein FliF [Acidiphilium multivorum AIU301]
          Length = 520

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 130/553 (23%), Positives = 239/553 (43%), Gaps = 38/553 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   +  +LG  ++  + +V +  + L  A            LY  L + D + I+  
Sbjct: 1   MKQLIANLRALGPVKLGAMGAVAVAVLGLMAALVLTGGPSPSATLYSGLGLKDASHITET 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A+I + I + G S+ V  + + +AR+ LA   LP + S++G+ +FD  N    +SF+
Sbjct: 61  LKAAHIRYAIGNGGHSVLVTPAQLDEARLLLAQHNLP-AGSSNGFAIFDHKNPLLGSSFL 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184
             I   RAL+ E+ RTI  I G+ A+RV +V+P    F    A   ASVM+      P  
Sbjct: 120 NRIDETRALDSELERTINLIHGVEASRVQVVLPRRDEFSLSTAPAQASVMLSLAGVGPLD 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQAIQHEIE 242
           ++S EAI +LVA+AVP L   +++++D+ G LL          +  +  ++ Q+ + ++ 
Sbjct: 180 HESVEAILNLVASAVPGLKPNNISIVDNRGDLLAQAGRTDNSLLSSRDAALKQSTERQLS 239

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             +   LAA +G +  R      ++ D  +     Y+P+ +V RS + ++    S +S  
Sbjct: 240 EAVRSMLAAVVGPNQVRVVTAVSMDFDRSEQTSTTYNPNGQVVRSQQQTRSK-SSRSSGT 298

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
              V+V  N+P  +  K   P+ L+   K  + +NYEI+       H   ++ R+S+AV+
Sbjct: 299 NKTVSVSNNLPGATSSKA-GPKRLDTQSKSTQTTNYEISQDVKHIVHATPQITRISVAVM 357

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           ++  + T   G+     +  + +A+I K+V  A G +  RGD + + S+ F  N+L  S 
Sbjct: 358 LDDVKTTNPKGKVIWTPRSPAQVAQIRKLVETAIGYDKSRGDVVDVQSLQFAPNELPVSA 417

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
              +    + S     ++  L+     +    +    + R                    
Sbjct: 418 KRSLIGRFLSSGLLMPLLRLLLTAAIGIAALLVVFRPMVRRII----------------T 461

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           PP ++     L+   N A+        +                    +  +I+ + E  
Sbjct: 462 PPENTTAEPALLAEQNGAIAGPATTEET---------------NPVKVIADLIDRHPEAS 506

Query: 543 AKILRKWARSEIE 555
             ILR W   E  
Sbjct: 507 VAILRDWLGQEGA 519


>gi|90579927|ref|ZP_01235735.1| flagellar M-ring protein [Vibrio angustum S14]
 gi|90438812|gb|EAS63995.1| flagellar M-ring protein [Vibrio angustum S14]
          Length = 582

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 97/550 (17%), Positives = 213/550 (38%), Gaps = 23/550 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    E  ++  I     +  I+
Sbjct: 45  LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPL-GTYETEELIPILDHFDQKKIE 103

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  M+      
Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTAEGDDILLQDMGFGVSQRMESERLKL 160

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191
           + E ++AR I+ IS +  A+V +  P    F +     TA+V +          +  ++I
Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249
             +VA AVP L    VTV D  G+LL++   + +   K       +  +  +   I+  L
Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA---- 305
              LG+ N+ S V   ++    +     YDP +   RS    +D                
Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSN 340

Query: 306 -VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
              VE  +P             + +  +E   NYE++T           ++R +++V V+
Sbjct: 341 QPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAVD 400

Query: 365 KGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
              +T+   G        ++ +A+I +++    G +  RGD + + S+ F+  +   +  
Sbjct: 401 YKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFVLPESQLAAD 460

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           + +      S     +  ALV +V  +++    +  L   +   D    +  G  +++  
Sbjct: 461 LPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMANS 520

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             S  +    +              F  S +     N +  +     +  +++   +  A
Sbjct: 521 ADSVGLIGAELDGGE---------GFELSSSSLDLPNLHKDEDLLKAVRALVDNEPDLAA 571

Query: 544 KILRKWARSE 553
           ++++ W   +
Sbjct: 572 QVVKSWVNED 581


>gi|88597235|ref|ZP_01100470.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190296|gb|EAQ94270.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 560

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFHGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV             +  +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|148980292|ref|ZP_01815979.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
 gi|145961311|gb|EDK26621.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
          Length = 557

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 113/520 (21%), Positives = 208/520 (40%), Gaps = 24/520 (4%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHL 97
               + +S  +  LY K    D +++   L E +I +++S +   I VP   V K R+ L
Sbjct: 55  VIMLWTSSERFRPLYSKSANFDSSQVLHMLDEESIRYQLSQDDGQILVPEGDVAKIRMIL 114

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A++GL      SG++  D   S G + FM+      ALEGE+AR+I ++S +  ARVH+ 
Sbjct: 115 ASKGL-KEQLPSGFDSLDSSKSLGESQFMENARYRHALEGELARSITTMSAVSLARVHLA 173

Query: 158 MPDMGSFRKIGARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
           +P    F +  A    + +I              E+I +LV+ AV  L    V V+D  G
Sbjct: 174 IPKESLFMRDDAEQPRASVIVHIINGMDLKPTQVESIINLVSGAVIGLKSEHVRVVDQHG 233

Query: 215 KLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           +LL+ +          GK     + ++  +       L   LG  NFR  + ++++    
Sbjct: 234 RLLSNDATVGDITVTTGKQSDYKRNLEKTLVAQATDMLTPILGAANFRVQIASDIDFSKV 293

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
           +  E +Y          + +  +  +E+S          N P V+D +   P      ++
Sbjct: 294 EETEEIY----ADPVVRKETLLSDMNESSMALGIPGALSNTPPVTDGEPQ-PEPNAKVNR 348

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKI 391
            E   +Y ++ K   T H    L+ LS+++VVN          + +Q      L  +  +
Sbjct: 349 SETSRDYAVSGKVRHTQHQQGVLQNLSVSIVVN-------DLANPNQTWTPEELTNVENV 401

Query: 392 VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
           V +A G N+ RGD+I  T   F+   +     V        + H    +  L+ ++ + L
Sbjct: 402 VRSAIGFNTERGDSIHTTHFPFVIASIPEQAPVAW----FENTHIMQPLKYLLGVMLSGL 457

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511
           +  + L  L +      A++ E+  +S+     I+           +             
Sbjct: 458 MIMVVLRPLAQYLTK-SAEQEELEAESMEYDDVITKEERAADAALQSKLESLGIDATGIK 516

Query: 512 SRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
           + +          +     L  + + +  R A+ILR W +
Sbjct: 517 ALDDNLPSADSPLEVQIKHLKLIAKEDPNRVAEILRTWIQ 556


>gi|332533127|ref|ZP_08408996.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037409|gb|EGI73863.1| flagellar M-ring protein FliF [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 571

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 86/559 (15%), Positives = 215/559 (38%), Gaps = 23/559 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   +  +   +   R + L   + + + + +    +   P    L  K++  ++ +  
Sbjct: 27  EQKSGYLSALNGVDVLRQVTLVIALAICLAIAIFIIIWARQPDMRPL-GKMQTEELIQTL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I++++  +G+ +SV  S     ++ +  +GL      SG ++  +   FG++ 
Sbjct: 86  DFLDAQKIEYQL--DGNVVSVDESEYQNIKLLMTREGL-EQGPASGSDIIMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++        E ++ARTI+ ++ I  A+V + +P    F +   +P+A+V++       
Sbjct: 143 RLERERLKHGREQQLARTIEELNNITRAKVLLAIPKENVFARREKKPSATVVLTLKRGRS 202

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240
              +  +++  ++A+AV  L+   VTV D  G+LL +                 +  + E
Sbjct: 203 LDREEVDSVVDMIASAVQGLEPARVTVTDQNGRLLNSGSQSSLAARSRKEYDLERKREQE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++  + +  +  Y+PD    RS    ++      +
Sbjct: 263 YLEKIDSILIPVVGLANYTAQVDLSMDFSSVEETQKRYNPDLPAVRSETTFEENNIGGLA 322

Query: 301 QPESA-----VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                       +  N+P  + +      +      KE   NYE++T        +  + 
Sbjct: 323 VGIPGALTNQPPLNSNIPEDAGQGGAGTATSPTRSHKEATRNYELDTTISHKRQQSGVIR 382

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           R+S++V V+        G +    +    L+ I +++    G + +RGD + + ++ F+ 
Sbjct: 383 RISVSVAVDYVPKVGENGETTMAPRSVEALSNIRRLLQGGVGFDMQRGDALEVVTVPFVR 442

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                +  V +   D     F  +   ++  +  +++    +  + +     D    E  
Sbjct: 443 EATNLAIEVPLWEQD----WFMKIARLVLGALVIIVLIMAVVKPMLKRLIYPDDTLEEYD 498

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             ++ S   I       L  + + A    + D      +L      +  +     +  ++
Sbjct: 499 EDALSSGVDIGDNTLDMLNKDFDSASVGFSSDGTLQLPDL------HGDEDLLKAIRALV 552

Query: 536 EINEERFAKILRKWARSEI 554
               E  +++++ W   + 
Sbjct: 553 ANEPELSSQVVKAWLTEDD 571


>gi|149191163|ref|ZP_01869421.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148835001|gb|EDL51980.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 557

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 215/554 (38%), Gaps = 25/554 (4%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           L++   +  +       R +I+ ++        +    + ++  +  LY K    D +++
Sbjct: 22  LNKASGWLNTFWQ-SSQRNVIIITIFATITAAIIVIMLWTSAERFRPLYSKSANFDSSQV 80

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E +I +++S +   I VP   V K R+ LA++GL      SG++  D   S G +
Sbjct: 81  LQLLDEESIRYQLSQDDGQILVPEGDVAKIRMILASKGL-KEQLPSGFDSLDSSKSLGES 139

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIRAI 180
            FM+      ALEGE+AR+I ++S +  ARVH+ +P    F +      R +  V I   
Sbjct: 140 QFMENARYRHALEGELARSITTMSAVSLARVHLAIPKESLFMREDGEQPRASVIVHIING 199

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAI 237
                   E++ +LV+ AV  L    V V+D  G+LL+ +          GK     + +
Sbjct: 200 MDLKPTQVESVINLVSGAVIGLKSEHVRVVDQHGRLLSNDATVGDITVTTGKQSDYKRNL 259

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +       L   LG  NFR  + ++++    +  E +Y          + +     +
Sbjct: 260 ERTLVAQATDMLTPILGASNFRVQIASDIDFSRIEETEEIY----ADPVVRKETLLNDVN 315

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           E+S          N P V+D +   P      ++ E   +Y ++ K     H    L+ L
Sbjct: 316 ESSMALGIPGALSNTPPVTDGEPQ-PEPNAKVNRSETSRDYAVSGKVRHIQHQQGVLQNL 374

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+++VVN          +A+Q      L  +  +V +A G +  RGDTI IT   F+   
Sbjct: 375 SVSIVVN-------DLANANQTWTPEELTNVENVVRSAIGFSETRGDTIHITHFPFVVAS 427

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           + +   V        + +    +  L+ ++ + L+  + L  L +       ++ +    
Sbjct: 428 IPDQAPVAW----FENTNIMQPLKYLLGVMLSGLMIMVVLRPLAQYLTKSAEQEEQEAES 483

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                                +     +        +     +S   +     L  + + 
Sbjct: 484 MEYDDVITKEERAAEAALQSKLESLGIDATGIKALDDNLPSADSP-LEVQIKHLKLIAKE 542

Query: 538 NEERFAKILRKWAR 551
           +  R A+ILR W +
Sbjct: 543 DPNRVAEILRTWIQ 556


>gi|83859389|ref|ZP_00952910.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852836|gb|EAP90689.1| flagellar M-ring protein [Oceanicaulis alexandrii HTCC2633]
          Length = 551

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 133/552 (24%), Positives = 234/552 (42%), Gaps = 10/552 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    +  +  G  R+  +  +        +     +NS     L+  L  +D   +S  
Sbjct: 1   MNAILEQLSRFGVGRLAAILGLTAGAAAALVFFTMSMNSNGQALLFSGLGPADAAAVSQR 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A I + + + GS++ V +  V +AR+ +A+ G   S  + GYE+FD+ ++ G TSF+
Sbjct: 61  LDQAGISYELQEGGSAVYVSTDQVDEARMRVASGG-ALSFGSVGYEIFDETDALGTTSFV 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           Q +   RALEGE+AR+I +++ + AARVH+V+P+   F +    P+ASV+I         
Sbjct: 120 QNVNAKRALEGELARSINTLNTVSAARVHLVLPERRLFSREQQEPSASVVISVRGELPSA 179

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMN 244
               IR+LVA AVP L    +T+ D  G+LL A        +         AI+ +++  
Sbjct: 180 QINTIRNLVATAVPGLQANRITLADDQGRLLAAPSDAEGDVLGAMLDDRQNAIERDLQQK 239

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   +   +G    R AV AE+N ++Q    + YDPD +VE S R  ++ +         
Sbjct: 240 IRDLVEGIVGSGGVRVAVTAEINRESQTRTRLEYDPDGQVEVSRRAIEERRSE--PVNSG 297

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            V+V +N P            L  ++    + NY+   +   +      LERL+++VVV+
Sbjct: 298 GVSVSENTPDAEAGANGETPLLATSESSTTERNYQNTQEETVSIIQAGDLERLAVSVVVD 357

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR----GDTITITSMDFLENQLFN 420
           +  +    G  + + + ++ L +I  +V+AA G  +      GD I   +          
Sbjct: 358 EVAVVGEDGTLSFEPRSEAELTQIRNLVAAAVGFPTDTTLTDGDQILQVTSMRFNRPDLT 417

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
            GT       +    F  +    V  V  LLV  L    L +    + +        +  
Sbjct: 418 LGTPAPEGFSLARLDFMRIAEIAVLFVTALLVILLVARPLVQGAVGNVSAARPALAGAGS 477

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
                       L+ N +  +     D  S      ++I   V K S  ++  ++E + +
Sbjct: 478 GGGKALPDNVQALLGNSDGTVMLPEGD-PSDDHIDVAQIEGQVKKSSVRKVAALVEQHPD 536

Query: 541 RFAKILRKWARS 552
               ILR W   
Sbjct: 537 ESMSILRTWMHD 548


>gi|74101647|gb|AAZ99737.1| FliFL [Aeromonas hydrophila]
          Length = 580

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 112/544 (20%), Positives = 219/544 (40%), Gaps = 35/544 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILIL-ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           +   ++ +  ++  SL R    IL  +++   +   +    + +S +Y  LY K E+ D 
Sbjct: 14  SFRTRVQEGLRNWRSLSRDNKSILTIALLAAIVAGTIVVILWTSSKNYVPLYGKQELYDT 73

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L +  + FR+  +   I VP S +   R+ LAA+G+  ++  +G E  D V   
Sbjct: 74  ANIMEMLEKEQVPFRLEKSTGQILVPESQLAHVRMALAARGV-RAAMPAGLEGLDNVTGL 132

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVM--I 177
           G + FM+      ALEGE+ARTI S+  + +ARVH+ +P    F  +   +P+ASVM  +
Sbjct: 133 GTSEFMEGARYRHALEGELARTIISLDAVRSARVHLAIPKRTLFVGRDEEKPSASVMLDL 192

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
           +          EAI +LVA ++  +  G VT++D  G+LL+A   +         + +  
Sbjct: 193 QPGQAMELGQVEAIANLVAGSISGMKPGAVTIVDQAGQLLSAELGDKAGFGKQSVQQMEY 252

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           V+ ++  I    +  L   LG  NFR  + A++N +  +  +   DP        + S  
Sbjct: 253 VRKLEQYIRQRASDMLYPMLGTGNFRVQIAADVNFNAVEETQQQLDPQG---VVTKESTK 309

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN------------YEIN 341
           + ++  +          N P  +  K   P + + T   E Q N            YE +
Sbjct: 310 SDKTIDALALGIPGALSNRPPETTPKSEQPAANQGTTSSETQKNDSRTERQEINKQYENS 369

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
              + T +   +LE++++++++N+    +        G     L +I ++V  + G +  
Sbjct: 370 RTIVHTRYQQGRLEKMNVSILLNQQSAPKD-------GWSAEQLEQIRQMVERSVGFDDA 422

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD I++   DF                         ++  L+ L       F G+  L 
Sbjct: 423 RGDQISLQVFDFTGAVPIAPPESGWWETPYWQDSLRYLVGGLLGLTLV----FFGIRPLV 478

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +          E   +        +  ++     +  +     +  +      ++ + +S
Sbjct: 479 KHLVRTQQLPDEEPAEEQDEQQEPTVGLSMRRDDDAALTAPMMSNGLIRADNQMEPQFSS 538

Query: 522 YVSK 525
              +
Sbjct: 539 LNLE 542


>gi|86149222|ref|ZP_01067454.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|148926414|ref|ZP_01810097.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205356032|ref|ZP_03222800.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561977|ref|YP_002343756.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85840580|gb|EAQ57837.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112359683|emb|CAL34469.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844577|gb|EDK21683.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346156|gb|EDZ32791.1| flagellar M ring protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|284925590|gb|ADC27942.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928381|gb|EFV07695.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315930535|gb|EFV09578.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           305]
          Length = 560

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV             +  +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|312884912|ref|ZP_07744602.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367389|gb|EFP94951.1| flagellar MS-ring protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 583

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 101/550 (18%), Positives = 200/550 (36%), Gaps = 29/550 (5%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
             L   R ++L   I + + L +   F+V  P    L    +  ++  I   L +  +D+
Sbjct: 50  GDLDLLRQVVLVLSISICVALIVMLFFWVREPEMRPL-GVYDTEELIPILDYLDQQKLDY 108

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
            +   G++I VP S     ++ +   GL +    +G ++  +   FG++  +++     +
Sbjct: 109 EL--EGNTILVPVSDFNSLKLDMVRAGL-NQEREAGDDILMQDMGFGVSQRLEQERLKLS 165

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR 192
            E ++++ I+ +  +  ARV + +P    F +     +ASV +          +  +++ 
Sbjct: 166 RERQLSKAIEELKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGANLKQEEVDSVV 225

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKALA 250
            +VA+AVP +    VTV D  G+LL++   +     +       +  +  +   I+  L 
Sbjct: 226 DMVASAVPGMKPNRVTVTDQHGRLLSSGSEDPASSARRKEHELERKQEQALREKIDSVLI 285

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
             LG  N+ + V  EL+    +    V+DPD    RS    +D      +          
Sbjct: 286 PILGFGNYTAQVDIELDFSAVEQTRKVFDPDKPATRSEYTLEDYNNG--NMVAGIPGALS 343

Query: 311 NMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           N P                    + +  KE   N+EI+T           + R ++AV V
Sbjct: 344 NQPPADASIPQDVAQMKDGTALGQGSVHKEATRNFEIDTTISHERRQTGVVNRQTVAVAV 403

Query: 364 NKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
               +     G +  Q   ++ L  I +I+    G +  RGD + + SM F E +     
Sbjct: 404 KNRSVVNPDTGETTYQPISEAELNSIKQILIGTVGFSESRGDLLNVLSMQFAEPESDVVT 463

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            V +      +       +ALV +        + +  L R                 +  
Sbjct: 464 DVPIWEHPNFNDWVRWFASALVII--------VVILVLVRPAMKKLINPASDEDDDQMYG 515

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           P        G        LD      F  S +L    N +  +     +  ++    E  
Sbjct: 516 PDGMPIGADGETSLIGGELDGGELFEFGSSIDLP---NLHKDEDVLKAIRALVSNEPELA 572

Query: 543 AKILRKWARS 552
           A++++ W + 
Sbjct: 573 AQVVKNWMQD 582


>gi|153834153|ref|ZP_01986820.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
 gi|148869523|gb|EDL68521.1| flagellar M-ring protein FliF [Vibrio harveyi HY01]
          Length = 580

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 215/558 (38%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++  T +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                  + + + +KE   N+E++T           L R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGTLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R      G        +S +  I +++    G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +L       +      +       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 454 PELEQMVDPPIWEHPNFNDWVRWFASALVIIVVILV---LVRPAMKKLLNPASGDEDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMNEN 579


>gi|269961618|ref|ZP_06175980.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
 gi|269833659|gb|EEZ87756.1| flagellar M-ring protein [Vibrio harveyi 1DA3]
          Length = 580

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 215/558 (38%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++  T +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPATRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                  + + + +KE   N+E++T           L R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R      G        +S +  I +++    G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDQNRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +L       +      +       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 454 PELEQMVDPPIWEHPNFNDWVRWFASALVIIVVILV---LVRPAMKKLLNPASTDEDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMNEN 579


>gi|260776484|ref|ZP_05885379.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607707|gb|EEX33972.1| flagellar M-ring protein FliF [Vibrio coralliilyticus ATCC BAA-450]
          Length = 582

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 211/560 (37%), Gaps = 29/560 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
               +F  +   L   R ++L   I + + L +   F+V  P    L    +  ++  + 
Sbjct: 39  QSTSKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVREPEMRPL-GAYDTEELIPVL 97

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  +++++  +G++ISVP+S     ++++   GL ++   +G E+  +   FG++ 
Sbjct: 98  DYLDQEKVEYKL--DGNTISVPASDYNSLKLNMVRAGL-NNERQAGDEILMQDMGFGVSQ 154

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV 184
            +++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     + 
Sbjct: 155 RLEQERLKLSRERQLAKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLRTGTS 214

Query: 185 YKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHE 240
            K    +++  +VA+AVP +    +TV D  G+LL++   +     +       +  +  
Sbjct: 215 LKQEEVDSVVDMVASAVPGMKPTRITVTDQHGRLLSSGSQDAASAARRKEHELERKQEQA 274

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I+  L   LG  N+ + V  +L+    +     +DP++   RS    +D      +
Sbjct: 275 LRDKIDSVLIPILGFGNYTAQVDIQLDFSAIEQTRKSFDPNTPSTRSEYTLEDYNNG--N 332

Query: 301 QPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                     N P                    + +  KE   N+E++T        +  
Sbjct: 333 VVAGVPGALSNQPPADASIPQDVAQMKDGSLMGQGSVHKEATRNFELDTTISHERRQSGI 392

Query: 354 LERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           + R ++AV +          G +  Q   D+ L  I +++  A G +  RGD + + SM 
Sbjct: 393 VNRQTVAVAIKNRASVNPDTGETTYQPLSDAELQSIRQVLIGAVGFSESRGDLLNVLSMQ 452

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F E ++     V +      +       +ALV +        + +  L R          
Sbjct: 453 FAEPEVEVLTDVPIWEHPNFNDWVRWFASALVII--------VVVLVLVRPAMKKLLNPA 504

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                  L  P        G        +D      F  S +L    N +  +     + 
Sbjct: 505 SDDDDDQLYGPDGLPIGADGETSLIGGDMDGGELFEFGSSIDLP---NLHKDEDVLKAVR 561

Query: 533 HMIEINEERFAKILRKWARS 552
            ++    E  A++++ W   
Sbjct: 562 ALVANEPELAAQVVKNWMED 581


>gi|120598250|ref|YP_962824.1| flagellar MS-ring protein [Shewanella sp. W3-18-1]
 gi|146293672|ref|YP_001184096.1| flagellar MS-ring protein [Shewanella putrefaciens CN-32]
 gi|120558343|gb|ABM24270.1| flagellar M-ring protein FliF [Shewanella sp. W3-18-1]
 gi|145565362|gb|ABP76297.1| flagellar M-ring protein FliF [Shewanella putrefaciens CN-32]
          Length = 560

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 94/558 (16%), Positives = 210/558 (37%), Gaps = 24/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  EHKSGVMGSLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I ++I  +   I VP     + ++ L+  G+      +  +   + + FG++ 
Sbjct: 76  DVLDKNKIKYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I       
Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG DNF S V   ++    +     ++PD    RS    +    S    
Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVE--NNSTGGT 309

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P +         +           +E   N+E++T    T      + R
Sbjct: 310 TGGIPGALSNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRR 369

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+      +  G+ A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 370 ISVSVAVDFKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMD 429

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +  + ++         F   +   V  +  L++    +  + +     D+    V 
Sbjct: 430 QLMEDIPSPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDS----VN 481

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                      + +      +    L++   +            N +        +  ++
Sbjct: 482 MPDDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 541

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 542 ANEPELSTQVVKNWLQDN 559


>gi|89075513|ref|ZP_01161924.1| flagellar M-ring protein [Photobacterium sp. SKA34]
 gi|89048785|gb|EAR54356.1| flagellar M-ring protein [Photobacterium sp. SKA34]
          Length = 582

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 97/550 (17%), Positives = 210/550 (38%), Gaps = 23/550 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    E  ++  I     +  I 
Sbjct: 45  LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPL-GSYETEELIPILDHFDQKKIA 103

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  M+      
Sbjct: 104 YQL--DGNTIRVPADEYSAIKLDLTRTGL-NAQTVEGDDILLQDMGFGVSQRMESERLKL 160

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191
           + E ++AR I+ IS +  A+V +  P    F +     TA+V +          +  ++I
Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249
             +VA AVP L    VTV D  G+LL++   + +   K       +  +  +   I+  L
Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSTTAKRKEYELERKQEQALREKIDAIL 280

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA---- 305
              LG+ N+ S V   ++    +     YDP +   RS    +D                
Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPSTAATRSEFTLEDINGGNQVAGIPGALSN 340

Query: 306 -VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
              VE  +P             + +  +E   NYE++T           ++R +++V V+
Sbjct: 341 QPPVESAIPQNVKDMQSGTNGSDGSVHRESTRNYELDTTISHKRAQTGVIDRQTVSVAVD 400

Query: 365 KGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
              +T+   G        ++ +A+I +++    G    RGD + + S+ F   +   +  
Sbjct: 401 YKTITDPKTGDVTRVPVSEAEIAKIRRLLMGGIGFLEARGDLLEVLSVPFALPESQLAAD 460

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           + +      S     +  ALV +V  +++    +  L   +   D    +  G  +++  
Sbjct: 461 LPIWENPNFSSWVRWIAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPVMANS 520

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
             S  +    +              F  S +     N +  +     +  +++   +  A
Sbjct: 521 ADSVGLIGAELDGGE---------GFELSSSSLDLPNLHKDEDLLKAVRALVDNEPDLAA 571

Query: 544 KILRKWARSE 553
           ++++ W   +
Sbjct: 572 QVVKSWVNED 581


>gi|224438214|ref|ZP_03659149.1| flagellar MS-ring protein [Helicobacter cinaedi CCUG 18818]
 gi|313144660|ref|ZP_07806853.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG
           18818]
 gi|313129691|gb|EFR47308.1| flagellar basal body M-ring protein FliF [Helicobacter cinaedi CCUG
           18818]
          Length = 569

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 109/573 (19%), Positives = 207/573 (36%), Gaps = 29/573 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-----HYDNLYVKL 55
           M +     Q  K    L + + +I+ +  +V I        F         +YD L+  L
Sbjct: 1   MDLKLIFEQISKVLNKLNKKQRIIILTTFVVIIAFLTYLVLFRVETKNEYENYDVLFSNL 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
              D   I   L +  I ++I  + + I VP   V + RI L + GLP +S N G+++  
Sbjct: 61  NPEDSAAILQRLQQDKIPYKIPQD-NIILVPKDKVYEQRISLGSLGLPKTSKNVGFDILL 119

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           + N  G T F Q++  + A + E+ARTI+S+  I  A V+I MP    F + G  P+ASV
Sbjct: 120 ENN-VGETPFTQDMKYLVAKQNELARTIESLKPIEKAIVNISMPKESLFVQGGHPPSASV 178

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNIL 227
            I   +      +    I+HLVAAAV  L   +V +++  G+LL  ++            
Sbjct: 179 KITVQDNMFLSIEQVVGIKHLVAAAVERLTPQNVKIINQDGELLGEDDEATQQSALGKQA 238

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
                  Q  ++ +E  I K L   +G     + V  + +   ++    V+  +  V  +
Sbjct: 239 AFQRKYQQNAENAMEAKIVKFLKPSVGDG-VEAQVTMDFDFSVRKSVAEVFGQNPVVRGT 297

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
               K+ +     Q      V  N+  V   K      +E   + E   N EI+      
Sbjct: 298 REYEKERKGFRPPQIGGVPGVVSNIGPVQGLK--DDEMMEWEKESEVVINNEIDKTVSDI 355

Query: 348 THDNYKLERLSIAVVVN--KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRG 403
                 L+R+S +V+++          G        +    + +  + V  A G N  RG
Sbjct: 356 KEHFGVLKRVSASVMIDGTYKEAVGEDGEPRLEYIPRSQEEMDKFLEGVKKAIGYNEARG 415

Query: 404 DTITITSMDFLENQLFNSGTVQVSFM-DILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           D + + +M F  + L            D + R+    +  L +++  +++       +  
Sbjct: 416 DQVEVINMQFRNSLLDYRPKDSWELFSDKVERYLGPFMPLLKYVIVAVIIFIFYKKIVAP 475

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                   + E                           ++           +        
Sbjct: 476 FAERMLEVQEEEDDDIESLMQIDDGEDDVNKFSELRKRVEDQLGLSSGFDEDSI------ 529

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             +    ++ ++I    +    + +   + E++
Sbjct: 530 KYEVLLEKMRNVIAERPQEIGALFQTLIKDELD 562


>gi|154174065|ref|YP_001408875.1| flagellar MS-ring protein [Campylobacter curvus 525.92]
 gi|112803763|gb|EAU01107.1| flagellar M-ring protein FliF [Campylobacter curvus 525.92]
          Length = 567

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 118/571 (20%), Positives = 227/571 (39%), Gaps = 27/571 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-----NSPHYDNLYVKL 55
           M     L Q  +    L   + ++ A  I+V +   +    +          Y  L+  +
Sbjct: 1   MDFKALLHQISQIYQKLSLRQKIVAAGSIVVVVGFLVFLSIYKDMKGDTYAGYSVLFENI 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             +D   I   L++ ++ +++++ G +I VP+  V K RI +A  G+P  S   G+E+FD
Sbjct: 61  SPNDSALIIDQLNKDSVSYKLANEG-TILVPTGDVYKERIAVATLGIPKES-KIGFEIFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K   FG T   Q +   RALEGE+ARTI+S+S I  A V I +P    F +  + PTAS+
Sbjct: 119 K-QEFGSTDAEQRVKFQRALEGELARTIESLSSIQKATVRIAIPKESVFTERQSPPTASI 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSL 231
           ++          K    I++LVAAAV NL+  +V +++  G  L   +   + +++ + +
Sbjct: 178 VVELKPGVSLSAKQIFGIKNLVAAAVTNLNTENVKIVNQDGVALGEEDGEFDSDMIAQQI 237

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
              +  +   E  I   LA  + G D   + V  + + D +  +   YDP++ V     +
Sbjct: 238 RYKREFETNYEQKIINVLAPIVGGTDRVVAKVNIDFDFDKKDSQSETYDPNNVVRSESNI 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            +  Q S  ++ +       N+  V           E  +K  +Q+NYEI+ K       
Sbjct: 298 EEKRQGSAPNEIQGVPGAVSNIGPVQGL--SDSNIKEQYNKSSQQTNYEISKKITNIKGQ 355

Query: 351 NYKLERLSIAVVVN------KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
              + R+S AVVV+      K       G         +    I  ++  A G +++RGD
Sbjct: 356 FASIVRVSAAVVVDGLYQPKKDEAGNPTGDIEYVALTQAQKDSITNLIKQAIGYSAQRGD 415

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            +T+ + +F   +  ++      FM     +    +  L ++   LL+       +    
Sbjct: 416 EVTLDNFEFKLAKDVSTSQRMDGFM---HNYILPFVPLLKYIFAALLLYIFYKKVIVPFM 472

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                +  +                    +     A     + +       +  +     
Sbjct: 473 QKMLEEAKDEDEPLPQDELEEIEIDAEDTLEKFKAARKKVEEQLGLSGDFNEDELR---Y 529

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                ++  +I    E  A +L++  +++ +
Sbjct: 530 DVLLEKMKTVILERSEEIANLLQEMVKNDND 560


>gi|260767706|ref|ZP_05876641.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|260617215|gb|EEX42399.1| flagellar M-ring protein FliF [Vibrio furnissii CIP 102972]
 gi|315179462|gb|ADT86376.1| flagellar M-ring protein FliF [Vibrio furnissii NCTC 11218]
          Length = 580

 Score =  306 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 209/551 (37%), Gaps = 30/551 (5%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              L   R ++L   I + + L +   F+V  P    L    E  ++  +   L +    
Sbjct: 47  MGDLDLLRQIVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYLDQQKQT 105

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+S     ++++   GL + S  +G ++  +   FG++  +++     
Sbjct: 106 YKL--DGNTILVPNSDYNSIKLNMVRAGL-NQSRQAGDDILLQDMGFGVSQRLEQERLKL 162

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++ + I+ +  +  ARV + +P    F +     +ASV +     S  K    ++I
Sbjct: 163 SRERQLGKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTLRTGSNLKQEEVDSI 222

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249
             +VA+AVP +    VTV D  G+LL++   +       K   + +  +  +   I+  L
Sbjct: 223 VDMVASAVPGMTPTRVTVTDQHGRLLSSGSQDPVSAARRKEQELERKQEQNLRDKIDSVL 282

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG+ N+ + V  EL+    +     +DP++   RS    +D      +         
Sbjct: 283 IPILGLGNYTAQVDIELDFSAIEQTRKRFDPNTPATRSEYTLEDYNNG--NVVAGVPGAL 340

Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P                    + +  KE   N+E++T           + R ++AV 
Sbjct: 341 SNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNFELDTTISHERKQTGVINRQTVAVA 400

Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V          G        +S L  I +++    G N  RGD + + SM F E ++   
Sbjct: 401 VKNRSSVNADTGEVTYTPLSESELNSIRQVLIGTVGYNENRGDLLNVLSMQFAEPEMDQL 460

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             V +      S     + +ALV +V  L+   L   AL++L N       ++ G   L 
Sbjct: 461 ADVPIWDNPNFSDWIRWLASALVIIVVVLV---LVRPALKKLLNPAAEDDEQLYGPDGLP 517

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                     G         +  +              N +  +     +  ++    E 
Sbjct: 518 IGADGETSLIGSDIEGGELFEFGSGIDLP---------NLHKDEDVLKAVRALVANEPEL 568

Query: 542 FAKILRKWARS 552
            A++++ W ++
Sbjct: 569 AAQVVKNWMQN 579


>gi|261252322|ref|ZP_05944895.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891]
 gi|260935713|gb|EEX91702.1| flagellar M-ring protein FliF [Vibrio orientalis CIP 102891]
          Length = 562

 Score =  306 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 98/557 (17%), Positives = 207/557 (37%), Gaps = 29/557 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 22  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GVYETEELIPVLDYL 80

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  +D+++   G++I VP+S     ++ +   GL ++   +G ++  +   FG++  ++
Sbjct: 81  DQQKLDYKL--EGNTILVPTSDFNTLKLDMVRAGL-NNEKQAGDDILLQDMGFGVSQRLE 137

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++++ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 138 QERLKLSRERQLSKAIEEMKQVRKARVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 197

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
              +++  +V++AVP +    +TV D  G+LL++   +   +   K   + +  +  +  
Sbjct: 198 EEVDSVVDMVSSAVPGMKPNRITVTDQHGRLLSSGTQDAASSARRKEHELERKQEQALRE 257

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +L+    +     +DP++   RS    +D          
Sbjct: 258 KIDSVLIPILGFGNYTAQVDIQLDFSAVEQTRKSFDPNTPSTRSEYTLEDYNNGSVV--A 315

Query: 304 SAVTVEQNMPHVSDRKVPLPRS-------LENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + +  KE   N+E++T           + R
Sbjct: 316 GVPGALSNQPPADASIPQDVAQMKDGSLLGQGSVHKEATRNFELDTTISHERRQTGVVNR 375

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            ++AV V    +     G +  Q   D+ L  I +++    G +  RGD + + SM F  
Sbjct: 376 QTVAVAVKNRAIVNPDTGETTYQPMSDAELNSIKQLLIGTVGFSEARGDLLNVLSMQFAV 435

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +      V +      +       +ALV +        + +  L R             
Sbjct: 436 PETEAIADVPIWEHPNFNDWIRWFASALVII--------VVVLVLVRPAMKKLLNPASDE 487

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               L  P        G        LD      F  S +L    N +  +     +  ++
Sbjct: 488 DDDQLYGPDGMPIGADGETSLIGGDLDGGELFEFGSSIDLP---NLHKDEDVLKAVRALV 544

Query: 536 EINEERFAKILRKWARS 552
               E  A++++ W + 
Sbjct: 545 ANEPELAAQVVKNWMQD 561


>gi|224825756|ref|ZP_03698860.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
 gi|224601980|gb|EEG08159.1| flagellar M-ring protein FliF [Lutiella nitroferrum 2002]
          Length = 543

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/552 (20%), Positives = 215/552 (38%), Gaps = 26/552 (4%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
             R L+   V+ + + L +    + +   Y  ++   E      +   L    I +R+  
Sbjct: 5   AVRTLLPLLVLAIGLTLAVTFWLWRDDARYKPVFGAQEKVVAADMMAVLDAEKIPYRLHP 64

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
               + VP + +G+ R+ LAA+G+ +    +G EL DK +  G++ F+Q++   R LEGE
Sbjct: 65  QTGQVLVPDADLGRVRMALAAKGVVAQ-LPAGLELLDKNDPLGVSQFVQDVRFRRGLEGE 123

Query: 139 IARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           + ++I ++  +  ARVH+ +P   SF    +     +  V ++       +   A+ +LV
Sbjct: 124 LTQSILALEPVQGARVHLSLPRSSSFVTAGEDKGSASVVVTLKPGRQLSNEQIAAVVNLV 183

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           A +V  L+   VT++D  G LL++     E           +  + E   N+   L   +
Sbjct: 184 AGSVSTLNPAKVTLVDQAGNLLSSRIELAEGGQPAAESDAAKRYREEALENVRALLTPVI 243

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G DNF+ ++ AE++ D  +     Y    +  +    +   ++S             N P
Sbjct: 244 GADNFKVSITAEVDNDRVEETREKY---GEAPKITNEASREEKSNDKLALGIPGSLSNRP 300

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
             +D   P   S+    K      Y  +   +   H   +L RLS+AVV+N+       G
Sbjct: 301 INTDSSAPAQESVGGNSKNAVTRQYAYDRSIMQIKHARGRLSRLSVAVVLNQAAAPAKGG 360

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                      LA ++K++    GI + RGD + +T+M+F       +        D L 
Sbjct: 361 ------WQAEQLANVDKVLRNGLGIKAERGDALAVTAMNF---PGQVALEPWWQQRDTLL 411

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
              + +   +  L+G LL+    L  LR+  +        V   +   P P+        
Sbjct: 412 DGASWLAYGVALLLGYLLIARPLLKILRQWASRPQTAGALVPLAAQGQPEPLLLEPDEQP 471

Query: 494 M----PNDNIALDSSNQDIFSHSRNLQSRIN----SYVSKQSDLRLLHMIEINEERFAKI 545
                    +AL        S    L    +              L  +     ER A++
Sbjct: 472 AGTAPQGRPLALPEGPPTGASPVMPLLENYDLPPAGSSVDVLVDHLKGLAAKEPERVAEV 531

Query: 546 LRKWARSEIEDR 557
           +++W + +  ++
Sbjct: 532 VKQWVQKDGRNQ 543


>gi|119715006|ref|YP_921971.1| flagellar M-ring protein FliF [Nocardioides sp. JS614]
 gi|119535667|gb|ABL80284.1| flagellar M-ring protein FliF [Nocardioides sp. JS614]
          Length = 531

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 207/554 (37%), Gaps = 33/554 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +   L     + TS    + ++        ++       +V++P Y  LY  L  SD + 
Sbjct: 5   LNRSLANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAASDASA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L      +++++ GS++ VP   V   RI L+ QGLP  SS  GY L D  +    
Sbjct: 65  IVDELDSQGTPYKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDNQD-IST 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AI 180
           + F ++    RA+EGE+A TI+++ G+  A VH+ +P    F      PTASV+I   A 
Sbjct: 124 SEFQEQTDFKRAMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDTAAG 183

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                +  +AI HLVA+++  LD  +VTV DS+GK+L++++            V + Q +
Sbjct: 184 TTFNAEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSFQQQ 243

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I   L   LG  N    V A+L+ D        Y   +KV      +   +    +
Sbjct: 244 TSQRIQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYDGPA 303

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
              S+  V      +            +  K+   S+  +             +  L + 
Sbjct: 304 GGSSSSGVVGPDGQMDSFGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTLHVG 363

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           VV++      V               ++  +++A  GIN  RGDT+ +T+M F       
Sbjct: 364 VVLDTTAAQTVNPT------------DVQDLIAATVGINPDRGDTVQVTTMPFDRTADKA 411

Query: 421 SGTVQVSFMDILSRHFAT--VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
           +     +               NA + +    ++    L + ++    +      V    
Sbjct: 412 AAAELAAATKAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREKTTTYLVEQLR 471

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
             +    ++A           AL+S+++                   +    L  + +  
Sbjct: 472 NDAAERQAAAAVAIQNSPALEALESADRAG----------------DEMRRELADLADGQ 515

Query: 539 EERFAKILRKWARS 552
            E  A +LR W   
Sbjct: 516 PEDVAALLRGWLVE 529


>gi|319427071|gb|ADV55145.1| flagellar M-ring protein FliF [Shewanella putrefaciens 200]
          Length = 560

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 94/558 (16%), Positives = 209/558 (37%), Gaps = 24/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  EHKSGVMGSLGGVDMMRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I ++I  +   I VP     + ++ L+  G+      +  +   + + FG++ 
Sbjct: 76  DVLDKNRIKYQIEVD--VIKVPEDKYQEVKLMLSRAGI--DGGTTSKDFLTQDSGFGVSQ 131

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I       
Sbjct: 132 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 191

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 192 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG DNF S V   ++    +     ++PD    RS    +    S    
Sbjct: 252 RTKIESILVPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPALRSEMTVE--NNSTGGT 309

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P +         +           +E   N+E++T    T      + R
Sbjct: 310 TGGIPGALSNQPPMESDIPEDATNASEKVVAGNSHREATRNFELDTTISHTRQQIGVVRR 369

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+      +  G+ A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 370 ISVSVAVDFKPGAADENGQVARVARTEQELTNIRRLLEGAVGFSTQRGDVLEVVTVPFMD 429

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +    ++         F   +   V  +  L++    +  + +     D+    V 
Sbjct: 430 QLMEDIPAPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDS----VN 481

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                      + +      +    L++   +            N +        +  ++
Sbjct: 482 MPDDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 541

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 542 ANEPELSTQVVKNWLQDN 559


>gi|156975431|ref|YP_001446338.1| flagellar MS-ring protein [Vibrio harveyi ATCC BAA-1116]
 gi|156527025|gb|ABU72111.1| hypothetical protein VIBHAR_03162 [Vibrio harveyi ATCC BAA-1116]
          Length = 580

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 215/558 (38%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGNTISVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++  T +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                  + + + +KE   N+E++T           L R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGTLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R      G        +S +  I +++    G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRTVNPDTGEVTYTPLSESEINAIRQVLIGTVGFDENRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +L       +      +       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 454 PELEQMVDPPIWEHPNFNDWVRWFASALVIIVVILV---LVRPAMKKLLNPASGDEDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMDEN 579


>gi|163732487|ref|ZP_02139932.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och
           149]
 gi|161393847|gb|EDQ18171.1| flagellar M-ring protein FliF, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/515 (24%), Positives = 217/515 (42%), Gaps = 12/515 (2%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
              +P+   LY  LE      +  AL +    F +   G SI V SS   + R+ LA++G
Sbjct: 1   MATAPNMTLLYAGLENGAAGDVVTALEQRGAVFEVR--GGSIFVDSSQRDELRMTLASEG 58

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP++S+  GYEL D ++ FG TS M +    RA EGE+ARTI S   I  ARVHI     
Sbjct: 59  LPANSTR-GYELLDTLSGFGTTSQMFDAAYWRAKEGELARTIVSSPHIAMARVHIASTGS 117

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             F++      +  +  +      +  +AIR LV++AV  L   DV V+D+ G L+   +
Sbjct: 118 NPFQRGVTPKASISVTPSGAAITPQQGKAIRFLVSSAVAGLASEDVAVIDANGALIGNAD 177

Query: 222 MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD 281
                +G      +     ++  + + L A +G  N    V  +   +++ IRE  +DP+
Sbjct: 178 EVAPTIGG-----EDKADVLKARVQRLLEARVGFGNSVVEVSVDTVTESESIRERTFDPE 232

Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
           S+V  S    ++   S +      VTV  N+P           S    ++  E+ NYE++
Sbjct: 233 SRVAISTDT-EERNTSSSEAGGGDVTVASNLPDEDG--AGGENSSSQNNETRERVNYEVS 289

Query: 342 TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                   +   ++R+++AV+VN+  LT+  G      + ++ L  +  +V++A G +  
Sbjct: 290 ETEREVLREPGAIKRVTVAVLVNEMTLTDEAGEQTVAPRDENELEALRDLVASAVGFDEA 349

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD ITI SM      L  +     S M   +    + +   +  + TL++    +  L 
Sbjct: 350 RGDIITIKSMGLQSVPLQGTAA-GTSLMSNFNIDVMSAVQMAILALVTLILGLFVVRPLL 408

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
             + ++DA        +                      L   +    +        I S
Sbjct: 409 SRNGLNDAPAIAALPAAEGQTDGQGLDGEIDGDDFQLPDLPVISDFGDAGGELPDLNIGS 468

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
            +S     RL  MI   ++   +ILR W   + E 
Sbjct: 469 GMSDDPVDRLRTMIGERQDETVEILRSWLEDKEES 503


>gi|24374740|ref|NP_718783.1| flagellar MS-ring protein [Shewanella oneidensis MR-1]
 gi|24349402|gb|AAN56227.1|AE015760_6 flagellar M-ring protein FliF [Shewanella oneidensis MR-1]
          Length = 553

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/559 (16%), Positives = 212/559 (37%), Gaps = 24/559 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       +   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 8   EHKSGVLGNLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 66

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I ++I  +   + VP     + ++ L+  G+  S++ S  +   + + FG++ 
Sbjct: 67  DVLDKNKIKYQIDVD--VVKVPEDKYQEVKMMLSRAGI-DSAATSKQDFLTQDSGFGVSQ 123

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  A+P+A+V+I       
Sbjct: 124 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGL 183

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 184 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKETEY 243

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I+  L+  LG DNF S V   ++    +     ++PD    RS    +    S    
Sbjct: 244 RTKIDSILSPILGHDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVE--NNSTGGS 301

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLEN------TDKKEEQSNYEINTKSIATTHDNYKLE 355
                    N P +         +            +E   N+E++T    T      + 
Sbjct: 302 TGGIPGALSNQPPMESNIPQEAATAATESVAAGNSHREATRNFELDTTISHTRQQIGVVR 361

Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           R+S++V V+         G+ A   + +  L  I +++  A G +++RGD + + ++ F+
Sbjct: 362 RVSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFM 421

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           +  + +    ++         F   +   V  +  L++    +  + +     D     V
Sbjct: 422 DQLVEDVPAPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYPDR----V 473

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                       + +      +    L++   +            N +        +  +
Sbjct: 474 NMPEDGRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRAL 533

Query: 535 IEINEERFAKILRKWARSE 553
           +    E   ++++ W +  
Sbjct: 534 VANEPELSTQVVKNWLQDN 552


>gi|71281873|ref|YP_268244.1| flagellar MS-ring protein [Colwellia psychrerythraea 34H]
 gi|71147613|gb|AAZ28086.1| flagellar M-ring protein FliF [Colwellia psychrerythraea 34H]
          Length = 563

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 86/567 (15%), Positives = 193/567 (34%), Gaps = 33/567 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q   F  S  S+   R + +   + + + + +      N P Y     KL    +    
Sbjct: 13  EQKSGFAASLGSVDILRQVTIVVALAICLAIAVFVIMLANEPEYRV-ISKLPTKQLITTM 71

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    ++++     ++ISVP+      ++ LA +GL +   + G ++  K   FG++ 
Sbjct: 72  DFLDANQVEYQ--QENNTISVPADEYQNVKLLLAREGL-TDEPSQGEDILMKDMGFGVSQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++        E +IA+TI+ +  I  A+V + +P    F +    P+A+V++       
Sbjct: 129 RLERERLKFGREQQIAKTIEQLKSISRAKVLLAIPRENIFARREKNPSATVVLTMQRGKI 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS--LSIVQAIQHE 240
              +  +A+  +VA+AV  L    VTV D  G+LL +   +           I Q  + E
Sbjct: 189 LSEEEVDAVVDIVASAVQGLTPNRVTVTDQNGRLLNSGSQDSISSRSRKEFEIEQKREQE 248

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   +G+ N+ + V   ++    +  +  Y+ D    RS    +        
Sbjct: 249 YMEKIDSILIPVVGLGNYTAQVDITMDFTNVEETQRRYNSDLPALRSEMSVESTNIGGAL 308

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTD-----KKEEQSNYEINTKSIATTHDNY--- 352
                     N P ++          +          E   NYE++     T        
Sbjct: 309 --GGIPGALTNQPPIASAIPEDATGGQKRSMPSRKHSESTKNYELDEAISHTKQQAGVVR 366

Query: 353 -----KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                        V             +    +     A I +++  + G + +RGD + 
Sbjct: 367 RVSVSVALDYVAGVATTPVEGGANTPAATFAPRSAGETASIRRLLQGSIGFDLQRGDVLE 426

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F          + +         F  V+  ++  +  +++    +  + +     
Sbjct: 427 VVTIPFNRPDYGVVAEIPIWQQP----WFIKVLKLVLGALVIIVLILAVVRPMLKRLIYP 482

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
           +    + G KS+     +       L  + +        D      +L      +  +  
Sbjct: 483 EQTPDDYGDKSLDGHIDLGDETMDMLTSDFDAGAVGFAADGSLQLPDL------HRDEDV 536

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
              +  ++    E  +++++ W   + 
Sbjct: 537 LKAVRALVANEPELSSQVVKSWLNEDE 563


>gi|294140203|ref|YP_003556181.1| flagellar M-ring protein FliF [Shewanella violacea DSS12]
 gi|293326672|dbj|BAJ01403.1| flagellar M-ring protein FliF [Shewanella violacea DSS12]
          Length = 571

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 94/553 (16%), Positives = 214/553 (38%), Gaps = 26/553 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              +   R + +   + + + L +    +   P Y  L  +++  ++ ++   L +  I+
Sbjct: 34  FGGVDMLRQITMILALAICLALAVFIMLWAQEPEYRPL-GQMDTQEMVKVLDVLDKNKIN 92

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++I+ +   I VP       ++ L+ +G+ S+SS + Y    + + FG++  M++     
Sbjct: 93  YQINVD--VIKVPEDQYQAVKLLLSREGIDSASSQNDY--LSQDSGFGVSQRMEQARLKH 148

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIR 192
           + E  +AR I+ +  I  A+V + +P    F +  A+P+A+V++         +  +A+ 
Sbjct: 149 SQELNLARAIEELRSISRAKVILAIPKENVFSRNRAKPSATVVLNVRRGGLGQEEVDAVV 208

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALA 250
            +VA+AV  L    VTV DS G+LL +   +       + L +VQ  + E    +   L 
Sbjct: 209 DIVASAVQGLIPTRVTVTDSNGRLLNSGSQDAVSARARRELELVQQKEVEYRTKVQSILM 268

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
             LG +NF S V   ++    +     Y+PD    RS    +    S+            
Sbjct: 269 PILGPENFTSQVDVTMDFTAVEQTSKRYNPDLPALRSEMTVE--NNSDGGSASGIPGALS 326

Query: 311 NMPHVSDRKVPLP-------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           N P +                +   +  +E   N+E++T    T      + R+S++V V
Sbjct: 327 NQPPMESDIPQDALNAEETSSASRGSSHREATRNFELDTTISHTRQQVGTVRRVSVSVAV 386

Query: 364 NKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +         G+     + +  L+ I +++  A G +++RGD + + ++ F++  L  + 
Sbjct: 387 DYKSGAAGEDGQINRVPRTELELSNIRRLLEGAVGFSTQRGDVLEVVTVPFMDQLLEEAP 446

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             ++         F   +   V  +  L +    +  + +     D+       K     
Sbjct: 447 APELWEQP----WFWRALKLGVGGMIILALILFIVRPMLKRLIYPDSANIPDEPKFGDEL 502

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
             I     +  +      L+    +            + +        +  ++    E  
Sbjct: 503 AEIEDQFASDTLG----MLNRPEAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPELS 558

Query: 543 AKILRKWARSEIE 555
            ++++ W + + +
Sbjct: 559 TQVIKGWLQQDEQ 571


>gi|195952552|ref|YP_002120842.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1]
 gi|195932164|gb|ACG56864.1| flagellar M-ring protein FliF [Hydrogenobaculum sp. Y04AAS1]
          Length = 500

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 237/556 (42%), Gaps = 64/556 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   + L    +   +L +T+ +I+ S+ +V  +L     F  +  HY  LY  L   D+
Sbjct: 1   MDYKEILNNLKERFQALNKTQQIIVLSIPVVLALLTGLIFFLTSRVHYAVLYGDLNNRDM 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I+  L + N+ ++I+ +G +I VP     + R+ LAA GLP+     G++L +K+   
Sbjct: 61  AAIAEQLEKDNVKYKITQDGRTILVPKQEARQLRLKLAAMGLPTKGYP-GFKLLNKMP-L 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IR 178
           G+T FMQ +   RALE E++ TI     I  A+V++ +P    F     +P+ASV   ++
Sbjct: 119 GMTDFMQHVEYQRALEEELSNTILGFRNIEKAKVNLAIPKPSIFITQSQKPSASVFIELK 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQA 236
                  +   AIR+LVAA+VP+L    VTV+DS G  LT   N     +  + L +   
Sbjct: 179 PGASITRRQVIAIRNLVAASVPDLTPNRVTVVDSNGVDLTEELNNPSSYLTNEQLRVKTD 238

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +++ I  ++ + L   LG +N R AV  E +    + +   Y+P++    S +  ++   
Sbjct: 239 LENSITKHLEQVLGQALGYNNVRVAVDVEPDFSQVETKSKNYNPNTTAIVSQQKKQETTT 298

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
             +           N+P +S  +   P +   + KKE  +NY+++ +         +++R
Sbjct: 299 GTSV--SGVPGTASNIPPMSGLR---PNANFQSTKKEVTTNYDVSVEKTHVVDKTIRIKR 353

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           +S+ V+VN                 +  L  I ++V AA G++ +RGDT+++ ++ F   
Sbjct: 354 MSVGVIVN-------------ADLKNVNLNSIRQLVIAAAGVDPKRGDTVSVIAVPFYRP 400

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +       V         +A    A + L+  L +        R+   + +        
Sbjct: 401 VVPKPPIYVV---------YAKYGIAGILLLLLLGILLFVFLKTRKKPEVRELPAVSAAM 451

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           +++ S            +                                +  +++ + +
Sbjct: 452 EALESLETEELREKAKEL-------------------------------ITVDKMIKVTK 480

Query: 537 INEERFAKILRKWARS 552
            N ++ AKI++ W  S
Sbjct: 481 ENPDKVAKIIKHWLSS 496


>gi|254461781|ref|ZP_05075197.1| flagellar M-ring protein FliF [Rhodobacterales bacterium HTCC2083]
 gi|206678370|gb|EDZ42857.1| flagellar M-ring protein FliF [Rhodobacteraceae bacterium HTCC2083]
          Length = 567

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/569 (17%), Positives = 212/569 (37%), Gaps = 30/569 (5%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +S       +        +  + + +     +  P    L+  L  S+   +  AL   
Sbjct: 4   LRSFYRQPAIQRAFPVVAAVFLVAIGLFFYVTLQVPDRTTLFASLPESEKPAVMEALRAN 63

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
             D +I      ++VP      +R+ LA+QGLP +S   GY +       G +  ++ + 
Sbjct: 64  GTDVQIDPITGEMTVPVGDYHNSRLSLASQGLP-TSMPDGYSVL-SDMPMGTSRSVERMR 121

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYKSA 188
             ++ E E++ +I +I  +  +RVH+ +P+  +F +    PTASV   ++       +  
Sbjct: 122 LKQSQELELSLSIDNIDVVAGSRVHLAIPERSAFARNAQNPTASVFVQLKLGRALSSQQV 181

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246
           +AI HLV+++V NL    VTV+D  G+LL+   ++    +  + L     ++      I 
Sbjct: 182 QAIVHLVSSSVANLPKSAVTVIDQNGRLLSDSVDDPATTLADRQLDYQLKLEDIYRRRIE 241

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +G  N  + V  +++   +++ + +  PD     S + + + + S  S+     
Sbjct: 242 SLLTPVVGPGNVSAQVSLDIDFTRREVTQDMVVPDQSALLSEQSALEEEISAPSR--GVP 299

Query: 307 TVEQNMPHVSDRK-------------VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               N P                        S           NYE++ K  + +     
Sbjct: 300 GAFTNTPPQMPSFERRVESNGEEGDAQAEESSSAKMRSSNNLRNYEVSRKVSSESSPMAL 359

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGK-----IDSYLAEINKIVSAATGINSRRGDTITI 408
           L  + +AV++ +           +            + EI  +V++  GIN+RRGDT+T+
Sbjct: 360 LTGVHVAVLLRELSPIGESVEGGEAPLMQIGIDPEKIEEIKALVASTVGINARRGDTLTV 419

Query: 409 TSMDFLENQLFNSGTVQ-VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +SM ++ ++   +                  +   ++ L    +VT   +  L  L  + 
Sbjct: 420 SSMPYISSESILASMSNREPAQWHEDEWVREMARNMLILAVLAIVTLGIVKPL--LTQLF 477

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                   GK ++S       +    M           +            +++  S   
Sbjct: 478 ATPSEGAAGKILMSDDDDIIDMDAIEMEAGQSLEYIKAKLKSKRGIISAEMLDTANSYDD 537

Query: 528 DLR-LLHMIEINEERFAKILRKWARSEIE 555
            +  +  M++ +  R + + +    ++++
Sbjct: 538 KIALIRMMVDDDAGRVSNVFKGMMENDMD 566


>gi|218778522|ref|YP_002429840.1| flagellar M-ring protein FliF [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759906|gb|ACL02372.1| Flagellar M-ring protein FliF [Desulfatibacillum alkenivorans
           AK-01]
          Length = 520

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 125/558 (22%), Positives = 222/558 (39%), Gaps = 49/558 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L +  +   S+   R + L  V+   +  F A  F+  +P Y  L+ +L   D  +
Sbjct: 1   MNDLLQRIAQIFQSMTPGRRIALVVVLAGLVAAFAAMFFWAGTPEYQVLFSQLSQEDAGK 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I ++++  G+++ VP   V + R+ LAA+GLP   S  G+E+FD+ +SF  
Sbjct: 61  IVSKLQEQRIPYQLAQGGTAVLVPGEQVYELRLSLAAEGLPKGGS-VGFEIFDE-SSFST 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           T F+Q++   RAL+GE++RTI   + + +A+V IV      F +  +  TASV++  + P
Sbjct: 119 TEFVQKLNYQRALQGELSRTIGQFNEVRSAKVLIVPAKDTVFVETTSPATASVLLDLVRP 178

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQ 238
                   I +LVA AV  L    VTV+D+TGK+        +         L + Q  +
Sbjct: 179 LSSGQVSGIVNLVANAVEGLGTEQVTVVDTTGKVWFKGAGEGDDAALAANNRLEMQQQTE 238

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
             +  ++   L   +G       V AE++ D ++  E  YDPDS V RS +  +     +
Sbjct: 239 DRLAKHVQSMLEQIVGPGKAIVRVRAEMDFDQEEYSEETYDPDSVVVRSQQK-RTEDTVK 297

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +   + V    N P ++            T K++E +N EIN      T     + RLS
Sbjct: 298 ETPGGATVNTMNNQPGMASGAALGQS---RTQKQDEVTNNEINRVQRRVTKVLPTITRLS 354

Query: 359 IAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +A V++    T         +    +    L +   IV  A G +  R D +T++S  F 
Sbjct: 355 VAAVLDGTYKTVENQDGVSTAQFVPRTAEELKQFEGIVKNAMGYSEDREDQVTVSSFQFT 414

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                +    +      ++++        +  +  LL     +  + +     + +K E 
Sbjct: 415 SLPGADMAAAEAP--SAITKYLNMYGKWALLTLLMLLTFVFVVRPILKSVKPPEPEKEET 472

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                     +  A     +                                  LR   +
Sbjct: 473 QALEHQEMALLPEAPEEIDIS---------------------------------LRARQL 499

Query: 535 IEINEERFAKILRKWARS 552
                E+  +++R W   
Sbjct: 500 ALDEFEKAEQLVRGWLGE 517


>gi|117919790|ref|YP_868982.1| flagellar MS-ring protein [Shewanella sp. ANA-3]
 gi|117612122|gb|ABK47576.1| flagellar M-ring protein FliF [Shewanella sp. ANA-3]
          Length = 561

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/558 (16%), Positives = 213/558 (38%), Gaps = 23/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I ++I  +   + VP     + ++ L+  G+ S ++++  +   + + FG++ 
Sbjct: 76  DVLDKNKIKYQIEVD--VVKVPEDKYQEVKMMLSRAGVNSPAAST-QDFLTQDSGFGVSQ 132

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V+I       
Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTSQPSATVVINTRRGGL 192

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGISARARRELELVQQKEAEY 252

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I+  L+  LG DNF S V   ++    +     ++PD    RS    +    S    
Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVE--NNSTGGS 310

Query: 302 PESAVTVEQNMPH-----VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P        D              +E   N+E++T    T      + R
Sbjct: 311 TGGIPGALSNQPPMESNIPQDATKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+         G+ A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +    ++         F   +   +  +  L++    +  + +     D+    V 
Sbjct: 431 QLVEDVPAPELWEQP----WFWRAVKLGIGALVILVLILAVVRPMLKRLIYPDS----VN 482

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                      + +      +    L++   +            N +        +  ++
Sbjct: 483 MPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 542

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 543 ANEPELSTQVVKNWLQDN 560


>gi|309388817|gb|ADO76697.1| flagellar M-ring protein FliF [Halanaerobium praevalens DSM 2228]
          Length = 512

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 137/552 (24%), Positives = 242/552 (43%), Gaps = 55/552 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +  ++ T L ++  +++  + ++    F    F   S +Y  L+  L  SD   I   L
Sbjct: 10  EEVKETWTKLNKSVQILIIILTILMAGAFGYLIFRGASSNYQPLFTNLSTSDTAAIVERL 69

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            E  +D+++  NG++I VP S + + R+ +A+ GLP      G+E+FD  + FG T F +
Sbjct: 70  DENQVDYKLGGNGNTILVPESEIHRLRLDMASAGLPDQGV-VGFEIFDSSD-FGTTEFER 127

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
            +   RAL GE++R+IQSISGI  ARV I  P+   F       TASV+++         
Sbjct: 128 RVNYYRALGGELSRSIQSISGIEFARVQITPPEESLFLDEEKSATASVVVKLSAGYKMSS 187

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIE 242
           +   A+++LVA+ V +L + +VT++D+ G LL+     E  R    ++ +I +  +  ++
Sbjct: 188 ERVRAVQNLVASGVQDLPLEEVTLVDTNGNLLSKPVNSEDGRWSDPQNFAIQKEFESALK 247

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ- 301
            ++   L   LG +NF   V A+LN D +      Y P       IR  +    S+ +  
Sbjct: 248 NDLRVLLTKVLGPNNFAVQVNAKLNFDQRHSESKTYAPVIDDSGIIRSQEVNTESQENGI 307

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              A   + N+P              + D++   +NYEIN +     +   ++ERLS++V
Sbjct: 308 NGGAPGTDANIPQYQA---EGTGEASSYDRENTITNYEINERIEEHIYAPGEVERLSVSV 364

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +++             Q   +  +A+I   V AA G N  RGD + I+S+ F ++    +
Sbjct: 365 MLD-------------QDTDEEKIAQIRNAVGAAIGYNEDRGDVLNISSIAFDDSMEVAA 411

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                +      R     I A + L+  +L + L ++  R+  + D +++ E+       
Sbjct: 412 QEAMEAQQAAERRQM--YIYAGLILLVLILTSALIIYLYRKKPSSDQSEQLELA------ 463

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                          D I L   N D                  +    L +MI  + E 
Sbjct: 464 ----------AEGDEDEIDLFEPNADQ-------------KKRAKVKNELENMIHSDPEN 500

Query: 542 FAKILRKWARSE 553
            AK++R W   E
Sbjct: 501 AAKLIRSWIVDE 512


>gi|127512297|ref|YP_001093494.1| flagellar MS-ring protein [Shewanella loihica PV-4]
 gi|126637592|gb|ABO23235.1| flagellar M-ring protein FliF [Shewanella loihica PV-4]
          Length = 565

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 95/550 (17%), Positives = 220/550 (40%), Gaps = 22/550 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              +   R + +   + + + L +    +   P Y  L  K++  ++ ++   L +  ++
Sbjct: 29  FGGVDMLRQITMILALAICLALAVFVMLWAQEPEYRPL-GKMDTQEMVQVLDVLDKNKVN 87

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           ++I  +   + VP       ++ L+  G+ +S S   Y    K + FG++  M+      
Sbjct: 88  YQIDVD--VLKVPEDQYQDVKMMLSRAGIDNSPSRDDY--LSKDSGFGVSQRMEAARLKN 143

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPSVYKSAEAIR 192
           + E  +ARTI+ +  +  A+V + +P    F +  ++P+A+V++         +  ++I 
Sbjct: 144 SQEQNLARTIEELKSVSRAKVILAIPKENVFARNRSKPSATVVVNTRRGGLGQEEVDSIV 203

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNINKALA 250
            +VA+AV  L+   VTV D+ G+LL +           + L +VQ  + E    I   L 
Sbjct: 204 DIVASAVHGLEPTRVTVTDANGRLLNSGSQTAGSARARRELELVQQKEAEYRSKIESILM 263

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA----- 305
             LG +NF + V   ++  + +     Y+PD    RS    ++     ++   +      
Sbjct: 264 PILGPENFTAQVDVNMDFTSVEQTAKRYNPDLPAVRSEMTVENNSTGASTGGIAGALSNQ 323

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
             +E N+P  +       ++L  +  KE   NYE++T    T      + R+S++V V+ 
Sbjct: 324 PPMEANIPQQATGTSAQEQTLPGSSHKEATRNYELDTTISHTRQQVGVVRRVSVSVAVDF 383

Query: 366 GRLT-EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G+     + +  L+ I +++  A G N++RGD I + ++ F++  +  +  +
Sbjct: 384 KTGPAGEDGQVTRVARTEQELSNIRRLLEGAVGFNTQRGDMIEVVTVPFMDQLVEEAPAL 443

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
            +         F   I  ++  +  L++    +  + +     D +K         S   
Sbjct: 444 AIYEEP----WFWRAIKLVMGGLIILVLILFVVRPMLKRLIYPDGQK----MPDAPSLGD 495

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
             + +      +    L+  + +            + +        +  ++    E   +
Sbjct: 496 ELAEIEDQYAADTLGMLNRPDAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPELSTQ 555

Query: 545 ILRKWARSEI 554
           +++ W +   
Sbjct: 556 VVKGWLQENE 565


>gi|296534177|ref|ZP_06896667.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
 gi|296265497|gb|EFH11632.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
          Length = 525

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 124/472 (26%), Positives = 210/472 (44%), Gaps = 13/472 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L +  +S  +LG  R+  LA   L+ + L         +     LY  L+  D  +I  A
Sbjct: 33  LGRAIESLRALGTARLAALAFTGLLTLGLIGFLTLRTATTPMGLLYGDLDQRDAAQIVAA 92

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A + +R+  NG+ +  P   + + R+ LA  GLP +  + GYE+FD+ +    T F 
Sbjct: 93  LERARVPYRLGRNGTEVLAPEEDIPRLRLSLARDGLP-AGGSVGYEIFDRQSGLTTTPFQ 151

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184
           Q+I R+RALEGEIAR+I+ + G+ +ARVH+V+P    F +      ASV+++        
Sbjct: 152 QDINRLRALEGEIARSIRGLDGVASARVHLVLPRREPFSRERGESQASVVLQMRGIHRLD 211

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIE 242
            +  +A+ HLVAAAVP L   ++ V+D  G+LL+         +      I +  +  + 
Sbjct: 212 REGVQAVLHLVAAAVPGLKPQNIAVVDGRGELLSRGGQAGANGLAQSQEEIRRGQEMRMA 271

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + + L   LG    R+    E++ D  Q  E  +DP+++V RS     ++ R+   Q 
Sbjct: 272 RAVEEMLERILGPGRVRAEATIEMDHDRVQTTEERFDPENQVPRSQSSVNESSRNGEQQN 331

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            S        P       P  +      ++EE  NYEI   +  T  D   + RLS+AV+
Sbjct: 332 VSVANQLPGAPPAQQNSGPQSQEA----RQEETVNYEIGRTTRNTLRDQPVVRRLSVAVL 387

Query: 363 VNKGRLTEVLGRSA-DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN---QL 418
           V+        G +A  + +    +  I+ +V  A G N  RGD + + S+ F E      
Sbjct: 388 VDGVWEPGEAGGAARFRERTPQEMERISALVRGAIGFNETRGDRLEVVSLRFAEPVWGSD 447

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             S    +    +     A ++ + ++ +  LL  F     + +        
Sbjct: 448 GESQRGPLGLPPLTPTLTARLLESALYALVALLAVFFVGRPVAKRLVAGMTP 499


>gi|330445366|ref|ZP_08309018.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489557|dbj|GAA03515.1| flagellar M-ring protein FliF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 582

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 211/552 (38%), Gaps = 27/552 (4%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    E  ++  I     +  I+
Sbjct: 45  LGNLDLLRQVILVLSVAICVALIVLVTMWIKEPEMRPL-GTYETEELIPILDHFDQKKIE 103

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +++  +G++I VP+      ++ L   GL ++ +  G ++  +   FG++  ++      
Sbjct: 104 YQL--DGNTIRVPAEEYSAIKLDLTRSGL-NTRTVEGDDILLQDMGFGVSQRLESERLKL 160

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAI 191
           + E ++AR I+ IS +  A+V +  P    F +     TA+V +          +  ++I
Sbjct: 161 SRERQLARAIEQISQVRKAQVLLATPKQSVFVRHNQEATATVFLTLSSGGSLGQQEVDSI 220

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHEIEMNINKAL 249
             +VA AVP L    VTV D  G+LL++   + +   K       +  +  +   I+  L
Sbjct: 221 VDMVATAVPGLRPTRVTVTDQHGRLLSSGTEDPSATAKRKEYELERKQEQSLREKIDAIL 280

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG+ N+ S V   ++    +     YDP +   RS    +D     T          
Sbjct: 281 MPVLGLGNYTSQVDVAMDFSALEETRKRYDPATAATRSEFTLEDINGGNTV--SGIPGAL 338

Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P V                  + +  +E   NYE++T           + R +++V 
Sbjct: 339 SNQPPVDSAIPQNVKDMQSGSGGADGSVHRESTRNYELDTTISHKRAQTGTIARQTVSVA 398

Query: 363 VNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+   +T+   G        ++ +A+I +++    G +  RGD + + S+ F   +   +
Sbjct: 399 VDYKTITDPATGDVTRVPVSEAEIAKIRRLLMGGIGFSEARGDLLEVLSVPFALPESQVA 458

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             + +      +     V  ALV +V  +++    +  L   +   D    +  G  IL+
Sbjct: 459 ADLPIWENPNFNNWVRWVAAALVIIVVIMVLVRPAMRKLLYPNQAPDGTPLDENGMPILA 518

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               S  +    +              F  S +     N +  +     +  +++   + 
Sbjct: 519 NTTDSVGLIGAELDGGE---------GFELSSSSLDLPNLHRDEDLLKAVRALVDNEPDL 569

Query: 542 FAKILRKWARSE 553
            A++++ W   +
Sbjct: 570 AAQVVKSWVNED 581


>gi|302389658|ref|YP_003825479.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM
           16646]
 gi|302200286|gb|ADL07856.1| flagellar M-ring protein FliF [Thermosediminibacter oceani DSM
           16646]
          Length = 517

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/568 (20%), Positives = 209/568 (36%), Gaps = 66/568 (11%)

Query: 1   MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  +++L  Q  +   S  + + + L    L+ I+      +F++ P Y  L+  L + D
Sbjct: 1   MEYVNKLKHQVSEFWNSRNKVQKISLILGALLVILTAGLLGYFISRPSYSPLFTNLSMQD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L +  I ++I+D G +I V S  V K R++LA +GLP      G+        
Sbjct: 61  AGEIVKRLEDMKIPYKIADGGKTILVESKDVYKTRLNLAQEGLPKGGV-LGFSDIFNKTK 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMI 177
            G T + +++   +AL+GE+ RTI+ +  + +ARVHIV P    F +      P+A+V +
Sbjct: 120 LGTTDWERQLQYTQALQGELTRTIEEMEQVESARVHIVQPRESLFIEPNAQKEPSAAVFL 179

Query: 178 RAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-----GKS 230
           +         +    I +LVA +V  L   ++T++D  G++L+   +             
Sbjct: 180 KLKPGVEIAEEEIRGIINLVAHSVEGLKPENITIVDEFGRVLSNIPLSEEQNTKEEINSQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVE 285
           L I    Q +++ N+   L    G  N    V A+LN D + +   ++ P        + 
Sbjct: 240 LVIQNNFQKQLQANVQSLLEQIFGPGNVAVRVNAQLNFDKKTVESRLFTPVSSETGDGIL 299

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
           RS++  ++      S P        N+P       P      N  K E   NYE+N    
Sbjct: 300 RSVQELREHFSGTGSVPTGNPGTGTNIPGYQ---QPNTNGTSNYQKTEVIRNYEMNESKE 356

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
             T     +++L+++VVVN+                D    +I  +V  A G + +R D 
Sbjct: 357 NVTVAPGTVKKLTVSVVVNR-------------DLNDEEKDKIATLVGNAIGYDIQR-DQ 402

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           IT+  M F                                               RR   
Sbjct: 403 ITVEGMTFNNQLADILSKQLAEENQ------------------------------RREMQ 432

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                   +    +        A+    M  + +A + +     +   +     ++    
Sbjct: 433 RLLIIISAIAAAILFIIAHRIIAMKRRRMEEEKLAYELAAAQQAASQLSDDVSADNREVF 492

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
                +  +     E  AKILR W   E
Sbjct: 493 S---EIEKLARKRPEDVAKILRTWLNEE 517


>gi|89056671|ref|YP_512122.1| flagellar MS-ring protein [Jannaschia sp. CCS1]
 gi|88866220|gb|ABD57097.1| flagellar M-ring protein FliF [Jannaschia sp. CCS1]
          Length = 583

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 131/577 (22%), Positives = 220/577 (38%), Gaps = 41/577 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L    +    +   R  +L   I    ++ +      + P +  LY  L+ +    +  A
Sbjct: 17  LNALLEIWNGMNGRRRGLLIGGIAALAVVLVILTRIASQPSFQLLYSGLDPAAAGEVVDA 76

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L+   +  RI  +G  I V ++   + R+ LA +GLP++    GYEL D ++ FG TS M
Sbjct: 77  LAARGVAHRI--DGDQIFVDATQRDELRMALAGEGLPANG-PQGYELLDSLSGFGTTSQM 133

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE++RTI +   I AARVHI  P    F+       +  +  A       
Sbjct: 134 FDAAYWRAKEGELSRTILASPAIRAARVHIANPSSDPFQPTNEVTASVAIRPASGGLAPG 193

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
            A A+R+LVA++VP L   +VTV+D  +G++L                       ++ N+
Sbjct: 194 HAHALRYLVASSVPGLRPENVTVIDADSGQVLGGQGQMTPAAD-----AAGRATTLQQNV 248

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            + LAA +G  N    V  EL    + I E V DP+S+V  +    +    S        
Sbjct: 249 ERLLAARVGPSNAVVQVSVELETARETILERVIDPESRVIIATDTEEMDNASTDGAAAGV 308

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
            TV  N+P           S   T +  E+  ++++        +   + R+++AV+VN 
Sbjct: 309 -TVASNLPDGDG--AAGEGSSAQTTESRERVTFDMSELQREVEREPGDIRRITVAVLVNG 365

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                  G +    +  + L  + ++V +A G +  RGD +TI SM F  +    +   +
Sbjct: 366 VEEINASGVAETIPRPAAELDALTELVRSAVGYDEARGDIVTIQSMAF--DAAAATELTE 423

Query: 426 VSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPI 485
             F D L+     ++  L+     L + F  L  L      D          +   P P 
Sbjct: 424 AGFADRLNLDVGQIVQTLLLAAVALAIAFGLLRPLLARSGGDSLNTLPPLEPTNGLPAPS 483

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS------------------------ 521
             AV+           D     + S +      + +                        
Sbjct: 484 DGAVSGDTSLPTTSTADVPEITMASTAPKELPPLPAVSQMGSAFDDALPMMMAGSLPGDL 543

Query: 522 ---YVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                      RL  +I+  EE   +ILR W   + E
Sbjct: 544 EQNLEDMDPVDRLRLLIQEREEETVQILRSWMNEDEE 580


>gi|113969625|ref|YP_733418.1| flagellar MS-ring protein [Shewanella sp. MR-4]
 gi|114046855|ref|YP_737405.1| flagellar MS-ring protein [Shewanella sp. MR-7]
 gi|113884309|gb|ABI38361.1| flagellar M-ring protein FliF [Shewanella sp. MR-4]
 gi|113888297|gb|ABI42348.1| flagellar M-ring protein FliF [Shewanella sp. MR-7]
          Length = 561

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 210/558 (37%), Gaps = 23/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       S   +   R + +   + + + L +    +   P Y  L  K+E  ++ ++ 
Sbjct: 17  ENKSGVLGSLGGVDMMRQITMILALAICLALAVFVMIWAQEPEYRPL-GKMETQEMVQVL 75

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I ++I  +   + VP     + ++ L+  G+  S++ S  +   + + FG++ 
Sbjct: 76  DVLDKNKIKYQIDVD--VVKVPEDKYQEVKMMLSRAGI-DSAAASSKDFLTQDSGFGVSQ 132

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-RAINPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  A+P+A+V+I       
Sbjct: 133 RMEQARLKHSQEENLARAIEQLQSVSRAKVILALPKENVFARNTAQPSATVVINTRRGGL 192

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEI 241
                +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 193 GQGEVDAIVDIVASAVQGLEPSRVTVTDSNGRLLNSGSQDGVSARARRELELVQQKEAEY 252

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I+  L+  LG DNF S V   ++    +     ++PD    RS    +    S    
Sbjct: 253 RTKIDSILSPILGPDNFTSQVDVSMDFTAVEQTAKRFNPDLPSLRSEMTVE--NNSTGGS 310

Query: 302 PESAVTVEQNMPHVSDRKVP-----LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P +                     +E   N+E++T    T      + R
Sbjct: 311 TGGIPGALSNQPPMESNIPQEADKATESVTAGNSHREATRNFELDTTISHTRQQIGVVRR 370

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V V+         G+ A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 371 VSVSVAVDFKPGAAGENGQVARVARTEQELTNIRRLLEGAVGFSAQRGDVLEVVTVPFMD 430

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             + +    ++         F   +   V  +  L++    +  + +           V 
Sbjct: 431 QLVEDVPAPELWEQP----WFWRAVKLGVGALVILVLILAVVRPMLKRLIYP----DNVN 482

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                      + +      +    L++   +            N +        +  ++
Sbjct: 483 MPEDSRLGNELAEIEDQYAADTLGMLNTKEAEYSYADDGSILIPNLHKDDDMIKAIRALV 542

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 543 ANEPELSTQVVKNWLQDN 560


>gi|197334317|ref|YP_002156678.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11]
 gi|197315807|gb|ACH65254.1| flagellar M-ring protein FliF [Vibrio fischeri MJ11]
          Length = 577

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 90/558 (16%), Positives = 203/558 (36%), Gaps = 34/558 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +   +  +L   R +IL   + + + L +   F+V  P    L    E  ++ ++   L
Sbjct: 41  SKLDSALGNLDLLRQVILVLSVSICVALIVMLFFWVQEPEMRPL-GVYETDELIQVLDHL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
                ++++  +G++I VP+S   K  + L+  GL   +   G ++  +   FG++  ++
Sbjct: 100 DAQKAEYKL--DGNTILVPASEFSKMNLDLSRAGLNK-AVGEGDDILLQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
           +     + E ++A T + +  I  A+V + MP    F +     +A+V +          
Sbjct: 157 QERLKLSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQ 216

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
           +  ++I  +VA+AVP +    VTV D  G+LL++   +       K   + +  +  +  
Sbjct: 217 EEVDSIVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRD 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG+ N+ + V   ++    +     +DP +   RS    +D          
Sbjct: 277 KIDAILIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVI--A 334

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P V                  + +  KE   N+E++T           + R
Sbjct: 335 GVPGALSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVAR 394

Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +  +  +    G         + L +I +I+  + G+N +RGD + + S+ F  
Sbjct: 395 QTVSVAIKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAI 454

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +   +  V +      +      +  L   +  + V  + +          +  + E  
Sbjct: 455 EEQPIAIDVPIWENPNFNDW----VKWLAGALVIIAVILVLVRPAMNKLLFPNQAEDEAL 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +  +       + + L  +                       N +  +     +  ++
Sbjct: 511 ANAERNAEGEMGLIGSDLDGDGFEFGSG------------IDLPNLHKDEDLLKAVRALV 558

Query: 536 EINEERFAKILRKWARSE 553
               E  A+++R W    
Sbjct: 559 ANEPELAAQVVRNWVSEN 576


>gi|59712459|ref|YP_205235.1| flagellar MS-ring protein [Vibrio fischeri ES114]
 gi|59480560|gb|AAW86347.1| flagellar M ring protein FliF [Vibrio fischeri ES114]
          Length = 577

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 91/558 (16%), Positives = 203/558 (36%), Gaps = 34/558 (6%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +   +  +L   R +IL   + + + L +   F+V  P    L    E  ++ ++   L
Sbjct: 41  SKLDSALGNLDLLRQVILVLSVSICVALIVMLFFWVQEPEMRPL-GVYETDELIQVLDHL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
                ++++  +G++I VP+S   K  + L+  GL   +   G ++  +   FG++  ++
Sbjct: 100 DAQKAEYKL--DGNTILVPASEFSKMNLDLSRAGLNK-AVGEGDDILLQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
           +     + E ++A T + +  I  A+V + MP    F +     +A+V +          
Sbjct: 157 QERLKLSRERQLASTFEQMRPIRKAQVLLAMPKQSVFVRHNQEASATVFLTMRMGAMLKQ 216

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEM 243
           +  ++I  +VA+AVP +    VTV D  G+LL++   +       K   + +  +  +  
Sbjct: 217 EEVDSIVDMVASAVPGMKPTRVTVTDQHGRLLSSGTQDPMAMAHRKEQELERKQEQSLRD 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG+ N+ + V   ++    +     +DP +   RS    +D          
Sbjct: 277 KIDAILIPILGLGNYTAQVDVSMDFSAVEQTRKQFDPQTPSTRSEYTLEDYNNGNVI--A 334

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P V                  + +  KE   N+E++T           + R
Sbjct: 335 GVPGALSNQPPVDSAIPQDIAELKDGSVLGQGSVHKEATRNFELDTTISHERKQTGTVAR 394

Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V V  +  +    G         + L +I +I+  + G+N +RGD + + S+ F  
Sbjct: 395 QTVSVAVKERQSVNPETGEVTYTPISAAELDKIRQIIIGSVGLNEQRGDLLNVLSVKFAI 454

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +   +  V +      +      +  L   +  + V  + +          +  + E  
Sbjct: 455 EEQPIAIDVPIWENPNFNDW----VKWLAGALVIIAVILVLVRPAMNKLLFPNQAEDEAL 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +  +       + + L  +                       N +  +     +  ++
Sbjct: 511 ANAERNAEGEMGLIGSDLDGDGFEFGSG------------IDLPNLHKDEDLLKAVRALV 558

Query: 536 EINEERFAKILRKWARSE 553
               E  A+++R W    
Sbjct: 559 ANEPELAAQVVRNWVSEN 576


>gi|163801845|ref|ZP_02195742.1| flagellar M-ring protein [Vibrio sp. AND4]
 gi|159174353|gb|EDP59157.1| flagellar M-ring protein [Vibrio sp. AND4]
          Length = 580

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 216/558 (38%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +GS++SV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGSTVSVESSDYNSIKLGMVRAGV-NQATAAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +        K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVSLTISTGVNLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQGLRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++  T +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSTVEQTRKNFDPNTPSTRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                  + + + +KE   N+E++T           L R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGTLTGQGSVRKESTRNFELDTTISHERKQTGTLAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R+     G        +S +  I +++  A G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRVVNPDTGEVTYTPLSESEINAIRQVLIGAVGFDESRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +L       +      +       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 454 PELEQMTDPPIWEHPNFNDWVRWFASALVIIVIILV---LVRPAMKKLLNPASDDEDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESGELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMNEN 579


>gi|54307259|ref|YP_128279.1| flagellar MS-ring protein [Photobacterium profundum SS9]
 gi|46911679|emb|CAG18477.1| Hypothetical FliF Flagellar M-ring transmembrane protein
           [Photobacterium profundum SS9]
          Length = 560

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 226/558 (40%), Gaps = 36/558 (6%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           L  TR+++L  +I   +   +    +  +  Y  LY + E  D +++   L +  +D+ I
Sbjct: 22  LTGTRLIVLLGLIAALVTTAVVIGLWQGNSQYRPLYGEQEKFDRSQVISVLEQQGMDYYI 81

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
                ++ V    VGKAR+ LAA G+  +   +G ++  + +S G + F++       LE
Sbjct: 82  EPQQGNVMVDRDSVGKARLALAAAGI-EAQLPAGLDILSQDSSLGTSQFIESARYRHGLE 140

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRK---IGARPTASVMIRAINPSVYKSAEAIRH 193
           GE+A +I ++  I   RVH+ +P    F +        +  + + +      +   AI +
Sbjct: 141 GELALSIMALDAISNVRVHLAIPKKTLFVRREKEQPSASVVLSLSSGRELTTEQVTAIVN 200

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMNINKAL 249
           LVA +VP+L+   V V+D  G+LL++               L  VQ ++        + L
Sbjct: 201 LVAGSVPDLNAERVNVIDQKGRLLSSVINREGKHSRNSSSYLEYVQKLEQSYIKRAARML 260

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              +G+DNF+  V A++N D  +  E  Y PD  V           R      +      
Sbjct: 261 RPMVGIDNFQVEVAADINYDRTEATEESYAPDGSVRNEFSTI---DRRIGKAAQGVPGAL 317

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            N P                ++ E   +Y ++     T +   +++ LS+++++N     
Sbjct: 318 SNRPPED---GEEEDPNAGNERSESSRDYALDRVLKHTLYQQGQVKSLSVSILLNGQ--- 371

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                          LA I ++++ A GIN  RGD  +I    F + +        V +M
Sbjct: 372 -------PDTFPPEQLANIKQMLADAIGINEVRGDQFSILVYPFTKAEANLLADEPVWWM 424

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
            ++   +   I  L  +V  +++  L   A+R+L   + +         +++    S + 
Sbjct: 425 QLIWLDYLRYI--LSAVVALVILLVLVRPAIRQLSGSNKSTALTAPNDKLVAITGESVSE 482

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS----------KQSDLRLLHMIEINE 539
            T L  + +  +++      + + +L S + S             +     L  + E   
Sbjct: 483 NTALNNDTSPEIEAVPATEKTETTSLSSVVTSENYLELPSPETGLEVQSSYLQMLSEKEP 542

Query: 540 ERFAKILRKWARSEIEDR 557
           ER A ++++W   + +D+
Sbjct: 543 ERVAHVVKQWITPKDDDK 560


>gi|323703169|ref|ZP_08114822.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM
           574]
 gi|323531828|gb|EGB21714.1| flagellar M-ring protein FliF [Desulfotomaculum nigrificans DSM
           574]
          Length = 514

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 117/563 (20%), Positives = 217/563 (38%), Gaps = 60/563 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + + L +  +      + +  ++     V +         +  P Y  L   LE  D 
Sbjct: 1   MNLKNLLDKLKQRWRETNQNKKALIILAGAVVLAGVFYLVLTLTRPRYAVLLGDLEPRDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L    I ++++D G +I VP   V + RI LA++GL  +    G+ELFDK + F
Sbjct: 61  GNIVAQLESDKIPYQLTDQGKTIMVPEDQVDEVRIKLASKGL-LNGMGQGFELFDK-SKF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IR 178
           G T F Q+++  RAL+ E+ RTI S+ G+  ARVH+V+P    F      P+ASV+  ++
Sbjct: 119 GETDFEQQVSYQRALQEELRRTITSVEGVEQARVHLVIPTKSVFLDDQGTPSASVVIKLK 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---------NILGK 229
                  +  + +  L+  +V  L   +V ++D+ G +L     +            + +
Sbjct: 179 PGASLKPEQVKGLNDLIIGSVEGLKPENVHIIDTEGHVLNDFLKDSSDVAGAFGGTAVER 238

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              I +A + E+E  + + L   LG +   + V A+L+ + QQ       P         
Sbjct: 239 QQQIRRAYEKELENRVQQMLTKLLGPNKAVAMVTADLDFNQQQTNTTEVLPGP------V 292

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           +S+ + +   +      T              +     +  K ++  NY+  T+  +   
Sbjct: 293 VSERSTKESGNDAGGGGTAGSTAQMPGQSVPGINNGQSSYTKSDDIKNYQNGTRVQSVVQ 352

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              K+ RLS AVV+++                     +I  IV+AA G N +RGD IT++
Sbjct: 353 APGKVLRLSTAVVLDESVKNLDK-------------TQIQDIVTAAIGFNPQRGDQITVS 399

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +M F  ++L  +  ++       +     +I A    V  LL T   L            
Sbjct: 400 TMTFDHSELDLAKEMEQEAKQQDNIRLYLIIGAAAAGVLLLLTTIFML------------ 447

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                     +            L+   +  +D   ++  +    +   +          
Sbjct: 448 ----------IRRRRRRQKAEQQLLQAQDAVVDEVAEEPPAPKWEIPPPV------DKQK 491

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            L  + E      A++L+ W + 
Sbjct: 492 ELKKIAEERPADIAQVLKVWLKE 514


>gi|37680665|ref|NP_935274.1| flagellar MS-ring protein [Vibrio vulnificus YJ016]
 gi|37199414|dbj|BAC95245.1| polar flagellar M-ring protein FliF [Vibrio vulnificus YJ016]
          Length = 581

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 98/555 (17%), Positives = 211/555 (38%), Gaps = 30/555 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 42  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GVFETEELIPVLDHL 100

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G++I V +S     ++ +   GL + S+ +G ++  +   FG++  ++
Sbjct: 101 DQQKINYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLE 157

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++ + I+ +  +  A+V + +P    F +     +ASV +     S  K 
Sbjct: 158 QERLKLSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQ 217

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    VTV D  G+LL +   +       K   + +  +  +  
Sbjct: 218 QEVDSIVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALRE 277

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  E++    +     +DP++   RS    +D      +   
Sbjct: 278 KIDSVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNG--NMVA 335

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + + +KE   N+E++T           + R
Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVRKESTRNFELDTTISHERKQMGVINR 395

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            ++AV +          G      + ++ +  I +++    G +  RGD + + SM F E
Sbjct: 396 QTVAVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAE 455

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +      V +      +       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 456 PEQEQLADVPIWEHPNFNDWIRWFASALVIIVVILV---LIRPAMKKLLNPAGDDEDEMY 512

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G   +     +           +     N +  +     +  ++
Sbjct: 513 GPDGLPIGADGETSLIGSDIDAGELFEFG---------SSIDLPNLHKDEDVLKAVRALV 563

Query: 536 EINEERFAKILRKWA 550
               E  A++++ W 
Sbjct: 564 ANEPELAAQVVKNWM 578


>gi|78776673|ref|YP_392988.1| flagellar MS-ring protein [Sulfurimonas denitrificans DSM 1251]
 gi|78497213|gb|ABB43753.1| Flagellar FliF M-ring protein [Sulfurimonas denitrificans DSM 1251]
          Length = 566

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 230/571 (40%), Gaps = 25/571 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56
           M       Q       L + + LI++  ++  +   +    +         Y+ L+  L 
Sbjct: 1   MDFKVLFSQLATLYDKLTKQQKLIISGAVVGIVAFIVFLVVYTEKRDALSKYETLFDSLS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
             D  ++   L + NI + I DN + I VP + V K RI +A+ G+P +S   G+ELFDK
Sbjct: 61  SEDAAKVIEQLEKDNIPYEILDN-NIIKVPKNAVYKERIAIASLGIPKNSG-VGFELFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TSF Q +  +RA+EGE++RTI S++ I +A V + +P    F +    PTASVM
Sbjct: 119 -QEFGATSFDQNVKYLRAIEGELSRTINSLAPIESASVSLALPKETLFVEKQGEPTASVM 177

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSL 231
           I          K    I++LV+AAVPNL   +V ++D+ G+ L  ++    +        
Sbjct: 178 ITLIEGRKLSSKQIRGIKNLVSAAVPNLSASNVMLIDNDGETLGDDDEMAQMGELSSVQQ 237

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           +     + + +  I + ++ F+ G     + V  E +   Q     VYDP++ V      
Sbjct: 238 NFKTKEEKKKQRKIIEVVSPFVGGEQKVVAQVTIEFDFSIQNSTSEVYDPENVVRSEQLS 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            +    S  ++         N+  V        +++E  +K    +NYE+      T  +
Sbjct: 298 EEKRDGSAPAEVGGVPGTVSNIGPVEGL--ASNKTIEKYEKNTGTTNYEVGKTVSTTKSE 355

Query: 351 NYKLERLSIAVVVN--KGRLTEVLGRSA----DQGKIDSYLAEINKIVSAATGINSRRGD 404
             +++R++ AVVV+      ++  G+       +   +S L  +  +VS + GI+  RGD
Sbjct: 356 FARIKRVTAAVVVDGKYNYKSDADGKPTSELEYEALSESDLEALRALVSRSIGISEDRGD 415

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I++ ++ F               ++ +     T +     L   + V  L L   +++ 
Sbjct: 416 QISVQNLQFKRADSD----PSKERVNQVVSFSQTYLAPFSELFKYIFVLLLLLILYKKVI 471

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
           +    +  E+  +      PI                    +             +    
Sbjct: 472 SPFAQRMLEISKEEDDIGKPILDIEDDEDEDLVEKVQSMRKKVEEQLGVGNHFNEDELKY 531

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                ++  M + + E  A +L+     E +
Sbjct: 532 DVLLEKIKSMTDESPEAVAHVLQALLTEESD 562


>gi|213425006|ref|ZP_03357756.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 429

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 178/418 (42%), Gaps = 33/418 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMP---------------------HVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
                 N P                       +        +     ++ E SNYE++  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRT 371

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
              T  +   +ERLS+AVVVN   L +              + +I  +   A G +  
Sbjct: 372 IRHTKMNVGDIERLSVAVVVNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSIN 425


>gi|294508650|ref|YP_003572709.1| flagellar M-ring protein [Salinibacter ruber M8]
 gi|294344979|emb|CBH25757.1| Flagellar M-ring protein [Salinibacter ruber M8]
          Length = 532

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/559 (19%), Positives = 213/559 (38%), Gaps = 46/559 (8%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L +  +    L   + + L  + +  I L +   ++ + P Y  L+  LE    NR+   
Sbjct: 5   LARIQQFLGRLSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRVVSR 64

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E    + + + GS++ VP + + + R+  ++ G       +GYELFD+  + G+T FM
Sbjct: 65  LKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMTDFM 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY 185
           Q++   RALEGE+A+T+ SI  +  ARVH+V P+   F       +ASV++         
Sbjct: 123 QKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGSLSQ 182

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIE 242
              + +  LVA AV  L    V V+D  G +L+     +    +    + + ++++ ++ 
Sbjct: 183 AQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEEQLM 242

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
                 L   +G DN    V  EL+ D     + + DP+S    S    ++    + +  
Sbjct: 243 KQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREEGGGDEAGN 302

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                             N+E++  +  +      + RL+++VV
Sbjct: 303 ----------------------------SNSVVRNFEVSRTTKRSEKSVGDVSRLTVSVV 334

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V++ R T   G    + +    +A+I  +V  A G +  RGD  TI       +      
Sbjct: 335 VDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGPAGP 394

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                  +   R +         ++  +        +L +       ++           
Sbjct: 395 VAGDGGGETPMRLYLRY----GLILVAIGAAVWVARSLVQALTATPEEQPTPLQADESRQ 450

Query: 483 PPISSAVTTGLMPNDNIALDSS--------NQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
               +A       +   AL  +          DI+++  + +++       +    +   
Sbjct: 451 VEGRTADGAVEEGDGPAALQETEEEEESLVKDDIYTNKLSDEAKARLEARSEMFEEIQDQ 510

Query: 535 IEINEERFAKILRKWARSE 553
           +E N E+ A ++R W   +
Sbjct: 511 VEENPEQTADLIRSWLVED 529


>gi|83815862|ref|YP_446715.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855]
 gi|83757256|gb|ABC45369.1| flagellar M-ring protein FliF [Salinibacter ruber DSM 13855]
          Length = 532

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/559 (18%), Positives = 213/559 (38%), Gaps = 46/559 (8%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L +  +    L   + + L  + +  I L +   ++ + P Y  L+  LE    NR+   
Sbjct: 5   LARIQQFLGRLSTGQQVGLGLLAVGTIALLVGTAYWSSQPDYALLFGDLEPEAANRVVSR 64

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E    + + + GS++ VP + + + R+  ++ G       +GYELFD+  + G+T FM
Sbjct: 65  LKEEGTPYELRNQGSAVYVPRASMHELRLQFSSDG-TIDDGQTGYELFDQ-GTLGMTDFM 122

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-INPSVY 185
           Q++   RALEGE+A+T+ SI  +  ARVH+V P+   F       +ASV++         
Sbjct: 123 QKLNSKRALEGELAQTVSSIGQVEGARVHLVEPEDDPFEAQQVEASASVVLSLTGGSLSQ 182

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIE 242
              + +  LVA AV  L    V V+D  G +L+     +    +    + + ++++ ++ 
Sbjct: 183 AQVQGVTQLVAGAVEKLSPSQVKVIDQDGNMLSDPNAADENVQMTSTQIDMQRSVEEQLM 242

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
                 L   +G DN    V  EL+ D     + + DP+S    S    ++    + +  
Sbjct: 243 KQGQSMLREVVGPDNAVVRVSTELDFDRTVTEKNLVDPESATVVSEERMREEGGGDEAGN 302

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                                             N+E++  +  +      + RL+++VV
Sbjct: 303 ----------------------------SNSVVRNFEVSRTTKRSEKSVGDVSRLTVSVV 334

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V++ R T   G    + +    +A+I  +V  A G +  RGD  TI       +      
Sbjct: 335 VDQERTTGPDGEPTYEPRSQEEIAKIESLVKNAVGFDEERGDRFTIQQTRLDTDAGPAGP 394

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                  +   R +         ++  +        +L +       ++           
Sbjct: 395 VAGDGGGETPMRLYLRY----GLILVAIGAAVWVARSLVQALTATPEEQPTPLQADESRQ 450

Query: 483 PPISSAVTTGLMPNDNIALDSS--------NQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
               +A       +   AL  +          D++++  + +++       +    +   
Sbjct: 451 VEGRTADGAVEEGDGPAALQETEEEEESLVKDDMYTNKLSDEAKARLEARSEMFEEIQDQ 510

Query: 535 IEINEERFAKILRKWARSE 553
           +E N E+ A ++R W   +
Sbjct: 511 VEENPEQTADLIRSWLVED 529


>gi|27365280|ref|NP_760808.1| flagellar MS-ring protein [Vibrio vulnificus CMCP6]
 gi|320155664|ref|YP_004188043.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O]
 gi|27361427|gb|AAO10335.1| flagellar M-ring protein FliF [Vibrio vulnificus CMCP6]
 gi|319930976|gb|ADV85840.1| flagellar M-ring protein FliF [Vibrio vulnificus MO6-24/O]
          Length = 581

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/555 (17%), Positives = 210/555 (37%), Gaps = 30/555 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 42  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GVFETEELIPVLDHL 100

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G++I V +S     ++ +   GL + S+ +G ++  +   FG++  ++
Sbjct: 101 DQQKINYKL--DGNTILVETSEFNSIKLDMVRSGL-NQSTQAGDDILLQDMGFGVSQRLE 157

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++ + I+ +  +  A+V + +P    F +     +ASV +     S  K 
Sbjct: 158 QERLKLSRERQLGKAIEEMKQVRKAKVLLALPKQSVFVRHNQEASASVFLTLNTGSNLKQ 217

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    VTV D  G+LL +   +       K   + +  +  +  
Sbjct: 218 QEVDSIVDMVASAVPGMKTSRVTVTDQHGRLLNSGSQDPVSAARRKEQELERNQEQALRE 277

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  E++    +     +DP++   RS    +D      +   
Sbjct: 278 KIDSVLIPILGFGNYTAQVDIEMDFSAVEQTRKQFDPNTPATRSEYALEDYNNG--NMVA 335

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + + +KE   N+E++T           + R
Sbjct: 336 GVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVRKESTRNFELDTTISHERKQMGVINR 395

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            ++AV +          G      + ++ +  I +++    G +  RGD + + SM F E
Sbjct: 396 QTVAVAIKDRATINPDTGDVTYTPRSEAEINAIRQVLVGTVGFSENRGDLLNVLSMPFAE 455

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +      V +      +       +ALV +V  L+   L   A+++L N       E+ 
Sbjct: 456 PEQEQLADVPIWEHPNFNDWIRWFASALVIIVVILV---LIRPAMKKLLNPAGDDDDEMY 512

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G   +     +           +     N +  +     +  ++
Sbjct: 513 GPDGLPIGADGETSLIGSDIDAGELFEFG---------SSIDLPNLHKDEDVLKAVRALV 563

Query: 536 EINEERFAKILRKWA 550
               E  A++++ W 
Sbjct: 564 ANEPELAAQVVKNWM 578


>gi|332994121|gb|AEF04176.1| flagellar MS-ring protein [Alteromonas sp. SN2]
          Length = 564

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/559 (17%), Positives = 216/559 (38%), Gaps = 26/559 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +    F  +  S    R + L  V+++ + + +    +   P +  L  K+E  ++    
Sbjct: 23  ENKSGFMDTLGSADMMRQMALVVVLVICVAIAVFILIWAQEPDFRPL-AKMETQELIETL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             +    I++R+   G+++ V S      R+ +  QGL + SS++G ++  +   FG++ 
Sbjct: 82  DYMDANQIEYRL--EGNTVYVRSDEFQTIRLGMTRQGL-TGSSDAGTDIIMQDMGFGVSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++      A E +IA TI+ IS I  ARV + MP    F +   + +A+V++ A     
Sbjct: 139 RVEMERLKHAREQQIAATIEDISSIQKARVLLAMPKENVFARREKKASATVVLTAKRGKV 198

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHE 240
              +  +++  +VA+AV N++   VTV DS G+LL +   +             +  + E
Sbjct: 199 IAGEEVDSVIDIVASAVQNMEPSAVTVTDSNGRLLNSGSQDSLSARARKEYEIERQREQE 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS  +++    S   
Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVSMDFTALEQTQRSYNPDLPAVRSEMINEQ--NSVGG 316

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSL-----ENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                     N P +       P +        +  K    NYE++T    T   +  + 
Sbjct: 317 GAMGIPGALTNQPPLDSNIPENPEAGAQATLPGSTSKVSTRNYELDTTISHTKKQSGVIR 376

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS++V V+  ++    G ++ + +    L  I +++    G +  RGD++ + S+ F  
Sbjct: 377 RLSVSVAVDYLQVAGEDGTTSAEPRNQEALLNIRRLLQGGVGFDVTRGDSLEVVSVPFTR 436

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                     +         F  ++  ++  +  +++    +  + R     D  K    
Sbjct: 437 MDDGVIEDAPIWEQPA----FLPILKLVIGGLVIIVLIIFVIRPMLRRLINPDESKEA-- 490

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                        +  G      ++ D     +   +       + +  +     +  ++
Sbjct: 491 -----DDFDADEGLDLGDETISMLSTDFDEGQVGFAADGSLMLPDLHKDEDVLKAVRALV 545

Query: 536 EINEERFAKILRKWARSEI 554
               E  A++++ W   + 
Sbjct: 546 ANEPELSAQVVKGWLMQDE 564


>gi|149908770|ref|ZP_01897431.1| flagellar M-ring protein [Moritella sp. PE36]
 gi|149808312|gb|EDM68251.1| flagellar M-ring protein [Moritella sp. PE36]
          Length = 580

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/573 (19%), Positives = 214/573 (37%), Gaps = 31/573 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +       +   L R R L    ++   I   + A  +  +  Y  LY K E+ D   
Sbjct: 22  IKNMRSGLKLTREKLYRFRSLFFIGLLSSLIAAAIVASLW-TAEQYVPLYGKQEMYDKAN 80

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +   DF++      I V  S + + R+ LAA G+   +   G    +     G 
Sbjct: 81  ILELLEQQKADFQLDTESGQILVAKSQLAQLRMALAALGV-KKNIPMGMGGLEGKMGLGT 139

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181
           + FM+  +   ALEGE+A +I +I  +  ARVH+ +P+   F  +   + +ASVM+    
Sbjct: 140 SQFMESKSYRFALEGELALSIITIDAVRNARVHLALPERTLFIGRHEEQASASVMLDLQP 199

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIVQ 235
                     AI +LVA++V NL   +++V+D  G+LLT +  +      +  + ++   
Sbjct: 200 GRELSQGQVSAIINLVASSVTNLKPDNISVVDQAGRLLTLSGSQSSNRGQVATQQVTFKN 259

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++  +   I++ L   +G +NFR  + A+L+ +  +       P++ + +     +   
Sbjct: 260 DLEARLTRRISELLYPLVGAENFRIQLTADLDFNEVEETVETVSPETVLTKENIREQV-- 317

Query: 296 RSETSQPESAVTVEQNMPHVSDRK-------VPLPRSLENTDKKEEQSNYEINTKSIATT 348
            S             N+P V                S   T + +    Y +    +   
Sbjct: 318 -SGDVNAVGIPGSLSNLPPVKKVTKKGKKTASSEAESSMITKRNDYSKEYVVGRSVMHKK 376

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
           ++  ++  LS++V++N    T   G        D  LA+I+  +  A GI + RGD + I
Sbjct: 377 YEFGRINNLSVSVILNNKIATGKEG------WSDEELAKISITIKNAIGIVASRGDQLNI 430

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           +  DF+         +    MD++       +  +V  +  L +    +  L +      
Sbjct: 431 SGYDFIAVPEITLEALPWWQMDVIQ----AYLRYIVITILGLALIMFVIRPLTKHFVSQL 486

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD--IFSHSRNLQSRINSYVSKQ 526
            +       S        +      +  D +   S   +    +                
Sbjct: 487 RQADNAALASTEQTSEAKTNSLNTDIKPDELTKASKPVNMTELTSVEMPALPAPGSEFSV 546

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559
               L  + +    R A++L+ W +S    +  
Sbjct: 547 QLNHLQILADKEAVRVAEVLKGWVKSNGGSQNE 579


>gi|167576644|ref|ZP_02369518.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH]
          Length = 531

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/535 (20%), Positives = 209/535 (39%), Gaps = 20/535 (3%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            LI   V+ + +          +  +Y  L+   E   ++ +  AL    I +RI  +  
Sbjct: 9   RLIPVVVLAIALTAAATLYMRYDQANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTG 68

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            + V  S V +AR+ LAA+G+ + ++  G E  D+ +  G + F+Q++   R LE E+A+
Sbjct: 69  QVLVARSDVARARMMLAARGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQ 127

Query: 142 TIQSISGIVAARVHIVMPDMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198
           +I ++  +  ARVH+ +             +  +  + ++       +   A+ +LVA +
Sbjct: 128 SIATLDPVERARVHLSIAKSSSFVMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGS 187

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           VPNL  G V+V+D  G  L+A       L  +  I    + ++  N+   LA  LG  NF
Sbjct: 188 VPNLAPGKVSVVDQHGAFLSARVDLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNF 247

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
           R +V A +N D  +     +    +  + +  +   +++             N P     
Sbjct: 248 RVSVTAVVNNDRVEETREQF---GEAPKVMSEATRNEQNRDRVALGVPGSLSNRPVDVP- 303

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
               P +   + +      +  +           +LE+LS+AVV+N          +  +
Sbjct: 304 -ASGPDADSGSRRNATTRQFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----TKGK 357

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 L  I+ I+ +  GI+ +RGD + ++S+DF                D L +    
Sbjct: 358 PWQPDQLRRIDDILRSGLGIDKQRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWY 414

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +  AL  L G LL+    L  L++               S L  P    A      P+D 
Sbjct: 415 LTYALAALFGYLLLARPMLRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDA 474

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                +   +        +       +     L  + E   ER A+++++W R++
Sbjct: 475 RPPLGAMLPLLDDVELPPAD---SGVEVLIGHLRSLSEKEPERVAEVVKQWIRND 526


>gi|239996428|ref|ZP_04716952.1| flagellar MS-ring protein [Alteromonas macleodii ATCC 27126]
          Length = 564

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/559 (17%), Positives = 209/559 (37%), Gaps = 26/559 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +    F  +  S    R + L  V+++ + + +    +   P Y  L  K+E  ++    
Sbjct: 23  ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             +    ID+++   G+ + V S      R+ +  QGL  +S ++G ++  +   FG++ 
Sbjct: 82  DYMDANQIDYKL--EGNIVYVRSDEFQNIRLGMTRQGLTKAS-DAGTDIIMQDMGFGVSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++      A E +IA TI+ I+ I  ARV + MP    F +   + +A+V++ A     
Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLAMPKENVFARREKKASATVVLTAKRGAV 198

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHE 240
              +  +A+  +VA+AV N++   VTV DS G+LL +   +             +  + E
Sbjct: 199 IAGEEVDAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS  + ++   S   
Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVTMDFTAMEQTQRSYNPDLPAVRSEMIMEE--NSVGG 316

Query: 301 QPESAVTVEQNMPHVSDRKVPLP-----RSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                     N P +             +++     KE   NYE++T    T      + 
Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS++V V+  ++    G      +    +  I +++    G +  RGD++ + S+ F  
Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                     +         F  ++  +V  +  +++    +  + R     D       
Sbjct: 437 MDAGEIEDAPIWEQPG----FLPILKLVVGGLVIIVLIIFVIRPMLRRLINPDESNDADE 492

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +          ++      D   +  +               + +  +     +  ++
Sbjct: 493 FDADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLP-------DLHKDEDVLKAVRALV 545

Query: 536 EINEERFAKILRKWARSEI 554
               E  A++++ W   + 
Sbjct: 546 ANEPELSAQVVKGWLMQDE 564


>gi|330505661|ref|YP_004382530.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
 gi|328919947|gb|AEB60778.1| flagellar MS-ring protein [Pseudomonas mendocina NK-01]
          Length = 560

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 213/557 (38%), Gaps = 27/557 (4%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR 75
            L     LI  +VI   + + +    + +   +  LY   E      +   L    I++R
Sbjct: 15  KLDPRMTLIGLAVIAALLAVGVVFYLWRDQGSFRPLYGAGEAYPAAEVMQVLDGDAINYR 74

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +      + V    +G+AR+ LAA+G+      +GYELFDK    G + F+Q++   R+L
Sbjct: 75  LHPQSGQVLVREDQLGRARMLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRLKRSL 133

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIR 192
           EGE+ART+ ++ G+  ARVH+ + +  SF   ++   + +  + +        +   AI 
Sbjct: 134 EGELARTVMALKGVEGARVHLALQESSSFVVGKREPGKASVMLQLAPGYKLTPEQVSAIV 193

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           +LVA +VP L+ G+V V+D  G LL+          ++  +V   Q +   N    LA  
Sbjct: 194 NLVAGSVPQLEAGNVQVVDQYGALLSRGIDTLGGPVQNWQVVDDYQSKAVANAEAVLAPV 253

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV---- 308
           LG  N+R +V A+++   ++     Y    +  R        +                 
Sbjct: 254 LGGGNYRISVSADIDFSQKEETFQAY---GESPRLRNEVVRDESVLDQLALGVPGSLANR 310

Query: 309 ------EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                   N    +  +         + +KE     + +       H  + L + SIAVV
Sbjct: 311 PPQPAPPANQQAQAGAQGENANQAATSLRKESNRQLDYDQSITHVKHAPFSLRQQSIAVV 370

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N     E        G       E+  +V +A G N  RGD +T++   F +  +  +G
Sbjct: 371 LNAAVAPE-------GGWTPEAREELAAMVKSAVGFNQARGDLLTLSVFPFTDAGIGGAG 423

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA-LRRLHNIDDAKKGEVGGKSILS 481
              + + +        +    VF + +LL+  + +   +R L   +      +       
Sbjct: 424 EDLLPWWENSK--VHDLAKLGVFALISLLLLLMVVRPAVRSLSQRNQTGLPAMAEGDDQL 481

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                 A    L    + A  ++     S    ++        +     L  + + + ER
Sbjct: 482 ALHAERAAERLLARVGDDAPGATVLGELSPLSEIRLPAPGSGLELQIEHLQMLAKNDPER 541

Query: 542 FAKILRKWARSEIEDRY 558
            ++++++W      D  
Sbjct: 542 VSEVIKQWIGRNERDLN 558


>gi|187778748|ref|ZP_02995221.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC
           15579]
 gi|187772373|gb|EDU36175.1| hypothetical protein CLOSPO_02343 [Clostridium sporogenes ATCC
           15579]
          Length = 526

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/566 (17%), Positives = 212/566 (37%), Gaps = 53/566 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGAVLQKLKDKKVEAKV--EGNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +  +RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KKGQTISKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNADGNNTNGSIVDNNMVN---RTTQNNNGSETSSRDETTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +     +  +  +A G + +RGD I+I 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRTAVRNLAVSAIGYDEKRGDAISIE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++  N    
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFVIKKRKN---- 456

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                                       +I +D S  +     +     + +   K    
Sbjct: 457 -----------------DEEYEEYEEGLDILIDDSGSETKQIPKFKPIDLEAQDEKTHVE 499

Query: 530 -RLLHMIEINEERFAKILRKWARSEI 554
             +    +   ++ A+I++ W   + 
Sbjct: 500 NEIRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|146277680|ref|YP_001167839.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
 gi|145555921|gb|ABP70534.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17025]
          Length = 572

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 123/566 (21%), Positives = 218/566 (38%), Gaps = 31/566 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  ++   +        R  + A VIL   +L +A    +  P    LY  L  ++  R+
Sbjct: 21  MRGMVSQLRQFGDQPGLRRAMPAIVILSVTVLALAGWILMREPSRVTLYPGLPEAEKARV 80

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L+   I   I +    ++VP     +AR+ LAAQGLP      G  +   +   G +
Sbjct: 81  IDTLTGGGIAAVIDERTGEVAVPGGDYHRARMLLAAQGLPQ-GLPDGNAMLSDLP-MGTS 138

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AIN 181
             ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++     
Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRDSQPPRASVFLQVAPGR 198

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239
                  EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     ++ 
Sbjct: 199 ALDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQMET 258

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                I   L+   G  N    V  +++   Q+IRE   DPD     S +     + S  
Sbjct: 259 LYRNRIESLLSPITGPGNLAVQVTIDMDFTRQEIREEQVDPDRTAILSEQS--QVEESAD 316

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLE--------NTDKKEEQSNYEINTKSIATTHDN 351
            Q         N P             E         +  +    N+EI+ K   T    
Sbjct: 317 PQARGIPGAVANAPPPEAALAEGAPPTEAGAAPPALRSRSQNSTRNFEISRKVETTLPAT 376

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQG--KIDSYLAEINKIVSAATGINSRRGDTITIT 409
            ++ R+S AVV+            A       ++  A+++++  +A G +  RGD +TIT
Sbjct: 377 ARIARVSAAVVIRAQPQPAPADPEAPSPPLLPEALQADLDRLTRSAIGFDETRGDVVTIT 436

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  FL+  +                    V +          +  + L  +R + N    
Sbjct: 437 AQPFLDTIMPEPPG---------WTSQPWVADLARQAFLLAALAVVALGVVRPILNRVLL 487

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                 G   LSP   +  V  G   +D  A   + Q   + +    +R      ++  L
Sbjct: 488 PAPAAAGALPLSPGEAAVEVGEGETLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 543

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
            +  ++E +  R A   R+   SE++
Sbjct: 544 VIRKLVEEDSGRIATTFRQMIASELD 569


>gi|54308116|ref|YP_129136.1| flagellar MS-ring protein [Photobacterium profundum SS9]
 gi|46912542|emb|CAG19334.1| Putative polar flagellar M-ring protein FliF [Photobacterium
           profundum SS9]
          Length = 580

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/552 (17%), Positives = 208/552 (37%), Gaps = 28/552 (5%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    + +++  I     +  + 
Sbjct: 44  LGNLDLLRQVILVLSVSICVALIVMMVMWIKEPEMRPL-GTYDTAELISILDHFDQTKVQ 102

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  +G++I VP+      ++ L   GL ++S   G ++  +   FG++  ++      
Sbjct: 103 YEL--DGNTIRVPADDFSSIQLGLTRAGL-NNSVAEGDDILLQDMGFGVSQRLEGERLKL 159

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++AR I+ I  +  A+V + +P    F +     +A+V +        K    ++I
Sbjct: 160 SRERQLARAIEQIRQVRKAQVLLALPKQSVFVRHNQEASATVFLTLGTNGSLKQQEVDSI 219

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKAL 249
             +VA+AVP+L    VTV D  G+LL++   + +   +       +  +  +   I+  L
Sbjct: 220 VDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDPSATAQRKEYELERKQEQGMREKIDSIL 279

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG  N+ S V   ++   Q+     +DP +   RS    ++      +         
Sbjct: 280 IPILGFGNYTSQVDVTMDFSAQEETRKRFDPSTPSTRSEYTVENYNNG--NIVAGIPGAL 337

Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P                  S      +E   N+E++T           + R +++V 
Sbjct: 338 SNQPPADASIPQDIADMQSGRGSSNGASHREATRNFELDTVISHRRAQTGTVSRQTVSVA 397

Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+   LT    G        ++ L +I +++    G +  RGD + + +M F        
Sbjct: 398 VDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQELI 457

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             + +      +     +  ALV +V  ++   L   A+++L     A  G    K+ L 
Sbjct: 458 AELPIWENPNFNTWIRWLAAALVIIVIVVV---LIRPAMKKLLYPHQAADGTPLDKNGLP 514

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                  +       D++       D F  S +     N +  +     +  ++    + 
Sbjct: 515 ILSSGDDIDLIGSELDSV-------DGFELSSSNLDLPNLHKDEDLLKAVRALVANEPDL 567

Query: 542 FAKILRKWARSE 553
            A++++ W   +
Sbjct: 568 AAQVVKNWVNED 579


>gi|167614819|ref|ZP_02383454.1| flagellar MS-ring protein [Burkholderia thailandensis Bt4]
 gi|257141404|ref|ZP_05589666.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 531

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 109/517 (21%), Positives = 200/517 (38%), Gaps = 20/517 (3%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
               +  +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA
Sbjct: 27  YMRYDQANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAA 86

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ + ++  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ + 
Sbjct: 87  RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIA 145

Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                       +  +  + ++       +   A+ +LVA +VPNL  G V+V+D  G  
Sbjct: 146 KSSSFVMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAF 205

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           L+A       L  +  I    + ++  N+   LA  LG  NFR +V A +N D  +    
Sbjct: 206 LSARVDLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE 265

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +    KV          +++             N P         P     + +     
Sbjct: 266 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASGPDVDGGSRRNATTR 320

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            +  +           +LE+LS+AVV+N          +  +      L  I+ I+ +  
Sbjct: 321 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----TKGKPWQPDQLRRIDDILRSGL 375

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+ +RGD + ++S+DF                D L +    +  AL  L G LL+    
Sbjct: 376 GIDKQRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPM 432

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  L++               S L  P    A      P+D      +   +        
Sbjct: 433 LRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPP 492

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       +     L  + E   ER A+++++W R++
Sbjct: 493 AD---SGVEVLIGHLRSLSEKEPERVAEVVKQWIRND 526


>gi|83718135|ref|YP_438373.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
 gi|83651960|gb|ABC36024.1| flagellar M-ring protein FliF [Burkholderia thailandensis E264]
          Length = 551

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 109/517 (21%), Positives = 200/517 (38%), Gaps = 20/517 (3%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
               +  +Y  L+   E   ++ +  AL    I +RI  +   + V  S V +AR+ LAA
Sbjct: 47  YMRYDQANYKPLFGAREPVQLDDVVSALDAQRIPYRIHPDTGQVLVARSDVARARMMLAA 106

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ + ++  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ + 
Sbjct: 107 RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLDPVERARVHLSIA 165

Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                       +  +  + ++       +   A+ +LVA +VPNL  G V+V+D  G  
Sbjct: 166 KSSSFVMMDGDKSAASVVLTLKPGARLAKEQIAAVINLVAGSVPNLAPGKVSVVDQHGAF 225

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           L+A       L  +  I    + ++  N+   LA  LG  NFR +V A +N D  +    
Sbjct: 226 LSARVDLDGDLTGNDEIAARFRDDVTRNVEDLLAPSLGPGNFRVSVTAVVNNDRVEETRE 285

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +    KV          +++             N P         P     + +     
Sbjct: 286 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASGPDVDGGSRRNATTR 340

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            +  +           +LE+LS+AVV+N          +  +      L  I+ I+ +  
Sbjct: 341 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----TKGKPWQPDQLRRIDDILRSGL 395

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+ +RGD + ++S+DF                D L +    +  AL  L G LL+    
Sbjct: 396 GIDKQRGDQLIVSSLDFAAPA---PAEPWWKERDTLEQGGWYLTYALAALFGYLLLARPM 452

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  L++               S L  P    A      P+D      +   +        
Sbjct: 453 LRMLQQWMQHRYGAPPAAAPASRLQAPEGGDAQAALPAPDDARPPLGAMLPLLDDVELPP 512

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       +     L  + E   ER A+++++W R++
Sbjct: 513 AD---SGVEVLIGHLRSLSEKEPERVAEVVKQWIRND 546


>gi|90406819|ref|ZP_01215011.1| flagellar M-ring protein [Psychromonas sp. CNPT3]
 gi|90312056|gb|EAS40149.1| flagellar M-ring protein [Psychromonas sp. CNPT3]
          Length = 571

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/556 (16%), Positives = 221/556 (39%), Gaps = 26/556 (4%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
                +++   R + +   +L+ + + +    +   P Y  L    +  ++      L +
Sbjct: 31  LATFFSNVDVLRQISMIIGLLIVLAIVVIIWSWGKQPDYRPL-GNYQTDELISTLDFLDK 89

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             I +++   G+S+ V +    K ++ +   GL   +++SG ++  +   FG++  ++  
Sbjct: 90  EKITYQL--EGNSVLVEAEQYQKIKLLMTRAGLTQDTNDSGDDILLQDMGFGVSQRVERE 147

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKS 187
               + E +I+  I S+  I  A+V + +P    F +   + +A+V+I          + 
Sbjct: 148 RLKLSRERQISVAIMSMKNITKAQVLLAIPKQSVFARKERKASATVVITTSKSYTLSAQE 207

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHEIEMNI 245
            ++I  +VA++V  L    VTV D  G+LL +   +          ++ +  ++E +  I
Sbjct: 208 IDSIVDIVASSVQGLSPNSVTVSDQRGRLLHSGSQDGLSSRSSAEFALERGRENEYKSKI 267

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
           +  L   LG+ N+ S V   ++   ++  + +++P  K  RS  L +   +S  S   + 
Sbjct: 268 DAILIPILGLSNYTSEVDLAMDFTIKEETQKIFNPSKKSVRSEMLVE--TKSTNSILGNI 325

Query: 306 VTVEQNMPHVSDRKVPL-------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                N P  +              +S+      EE  NYE++T  +   H    ++RL+
Sbjct: 326 PGALSNQPPAASSIPEELRKDGDKKKSVIGNSHNEETRNYEMDTTVVHIKHKVGTIDRLA 385

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           ++V ++    T   G      + D+ + ++ +++    G++  RGD + + S+ F    L
Sbjct: 386 VSVALDYVPTTNEAGEVTYAPRTDAEVEKLRRLLMGGLGLDIERGDILEMASVRFNRLDL 445

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
                 +    +         I     ++  LL   L +  + +     +  + E     
Sbjct: 446 DAVPEEEFWKTEAFQ----GYIRFGGSMLVILLTLLLIVRPIMKKLLYPETLEDEDDYDL 501

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
             +   + +     L  +++++++      F          N +  +     +  ++   
Sbjct: 502 GGAIGDLGNDNLQLLTADEDVSME------FDIGGGHIKLPNLHKDEDLLKAVRALVANE 555

Query: 539 EERFAKILRKWARSEI 554
               A+++++W  S+ 
Sbjct: 556 PGLSAQVIKEWLTSDE 571


>gi|254228436|ref|ZP_04921862.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262393588|ref|YP_003285442.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|47080313|dbj|BAD18882.1| basal body protein [Vibrio alginolyticus]
 gi|151939024|gb|EDN57856.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
 gi|262337182|gb|ACY50977.1| flagellar M-ring protein FliF [Vibrio sp. Ex25]
          Length = 580

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 97/558 (17%), Positives = 212/558 (37%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G++ISV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGNTISVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++    +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + + +KE   N+E++T           + R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R      G        +S +  I +++    G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +        +      S       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 454 PEAEQLEEPPIWEHPNFSDWVRWFASALVIIVVVLV---LVRPAMKKLLNPTSDDEDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMNDN 579


>gi|254255067|ref|ZP_04948384.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
 gi|124899712|gb|EAY71555.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia dolosa AUO158]
          Length = 537

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 103/534 (19%), Positives = 192/534 (35%), Gaps = 28/534 (5%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81
            L+   V+ + +              +  L+   E      +   L    I +RI     
Sbjct: 27  KLMPLVVLAICVTALAMMVMHHRDTRFKPLFGSQESISAADMMTVLETEGIPYRIHPESG 86

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            + VP S +G  R+ LAA+G+  +   +G +  DK +  G++ F+Q++   R LEGE+ R
Sbjct: 87  QVLVPESQLGATRMLLAAKGVV-AKLPAGLDQVDKSDPLGVSQFVQDVRFRRGLEGELVR 145

Query: 142 TIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAA 198
           +I S+  + +ARVH+ +    SF    G + +ASV++              AI  LVA +
Sbjct: 146 SIVSVEPVESARVHLSVAKSSSFILADGDKSSASVVLTLKQGRTLKKDQISAIVALVAGS 205

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           V NLD   VTV+D  G  L+A     +           I+ E   NI + L   LG  NF
Sbjct: 206 VANLDPSRVTVVDQAGNHLSALIDPDSAAATDGEFGARIREETLRNIRELLLPTLGDGNF 265

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
           R++V AE++ D  +     Y       + ++ +   +R              N P     
Sbjct: 266 RASVTAEIDHDRVEETRERY---GDTPKVMQEATRDERDGAQAAVGVPGSLSNRPIAPPA 322

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
                 +   + +  +   +  +   +       +L+RL++AVV+N             +
Sbjct: 323 ASQTADAQ-QSGRNAQTRQFAYDRNVVKIKRSPARLKRLNVAVVINNAAAPGGA-----K 376

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 +  I+ ++    GI+  R D + ++++DF       +             +  +
Sbjct: 377 AWTPEQIERIDAVLRNGLGIDGARDDALVVSALDFRAPPAVETLP-----WWKQPDNIVS 431

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +     + V  L +    L  L ++     A +  V   +  +  P              
Sbjct: 432 MATWGGYAVAALSIFLFVLRPLIKILREWVAGREPVPPVATDAQQPADEPAPGSGNGLRA 491

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             L                             L ++     ER A++++ W R 
Sbjct: 492 AMLPEDATLPPV----------GSDVDVLADHLKNLAHDAPERVAEVIKPWIRK 535


>gi|222824351|ref|YP_002575925.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100]
 gi|222539572|gb|ACM64673.1| flagellar MS-ring protein FliF [Campylobacter lari RM2100]
          Length = 561

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 124/574 (21%), Positives = 222/574 (38%), Gaps = 28/574 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPI------MLFMAARFFVNSPHYDNLYVK 54
           M     L Q  +   +L   + +I+A+ I+V +       LF +     +   Y  L+  
Sbjct: 1   MDYKTILHQVGQLYQNLSLRQRIIIAASIVVVVGFLVFLTLFRSGSTVASEAGYSVLFEN 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
              SD   I   L ++ + + + + G +I VP+  V K R+ +A+ GL    +  G+ELF
Sbjct: 61  ANTSDSAMIVTQLEKSGVPYILRNEG-TILVPNDQVYKQRLAIASAGLLPKDNKVGFELF 119

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           DK   FG T   Q++   RALEGE+ARTI+S+  I +A VHI       F +    PTAS
Sbjct: 120 DK-QEFGATEAEQKVKYQRALEGELARTIESLEPIHSATVHIAFAKDTLFTQQQVPPTAS 178

Query: 175 VMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSL 231
           V +          K    I++L+A++V  L   +V ++D  G  L      E +++   +
Sbjct: 179 VALTIKEGLKLNKKQIMGIKNLIASSVTKLTPENVKIMDQKGIPLDDEGAFESDLIAAQI 238

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
              +  ++E+E  I  ++A F  G D   + V  + +   ++ +  VYDP++ V     L
Sbjct: 239 KYKRDQEYELEQKIVASIALFAGGYDRVVAKVSIDYDFSKEESQSEVYDPNTVVRSEQTL 298

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            +  +  +  + +       N+  V        R +    K +  +N EI+ K   TT  
Sbjct: 299 EEHKEGYKDKEIQGVPGAVSNIGPVEGLDDKGAREV--YTKNQTTTNNEISKKITNTTKQ 356

Query: 351 NYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
              ++R+S AVVV+         +    +      D  +  I  +   A G N  RGD +
Sbjct: 357 FATIKRISAAVVVDGKYKVITDDQGNITNEYMPLSDKEIQAIENLTKGAIGFNLARGDAV 416

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            + +++F       +           SR     I  + ++   +L+       +      
Sbjct: 417 EVNNLEFHRTAKVENKV-----QTFYSRFVEPFIPPVKYVFAAILLFIFYKKVIVPFSQK 471

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A               I  A     +   N A     + +       +  +       
Sbjct: 472 MLADIKLEEEMEGKDGQIIDEA--EDAIEKFNAARRKVEEQLGFGDNFDEDALQ---YDV 526

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
              +L  +     E  A +L+K   +E E     
Sbjct: 527 LLEKLRAVANEKGEEVALLLQKLVENEAEFGEKD 560


>gi|121586818|ref|ZP_01676600.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80]
 gi|153213259|ref|ZP_01948671.1| flagellar M-ring protein FliF [Vibrio cholerae 1587]
 gi|153825593|ref|ZP_01978260.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2]
 gi|153828635|ref|ZP_01981302.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39]
 gi|229528855|ref|ZP_04418245.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)]
 gi|262191383|ref|ZP_06049573.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93]
 gi|297582031|ref|ZP_06943950.1| flagellar M-ring protein FliF [Vibrio cholerae RC385]
 gi|121548985|gb|EAX59024.1| flagellar M-ring protein FliF [Vibrio cholerae 2740-80]
 gi|124116059|gb|EAY34879.1| flagellar M-ring protein FliF [Vibrio cholerae 1587]
 gi|148875906|gb|EDL74041.1| flagellar M-ring protein FliF [Vibrio cholerae 623-39]
 gi|149740744|gb|EDM54843.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-2]
 gi|229332629|gb|EEN98115.1| flagellar M-ring protein FliF [Vibrio cholerae 12129(1)]
 gi|262032758|gb|EEY51306.1| flagellar M-ring protein FliF [Vibrio cholerae CT 5369-93]
 gi|297533726|gb|EFH72568.1| flagellar M-ring protein FliF [Vibrio cholerae RC385]
 gi|327484662|gb|AEA79069.1| Flagellar M-ring protein FliF [Vibrio cholerae LMA3894-4]
          Length = 580

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 211/563 (37%), Gaps = 30/563 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++  +   +   L   R ++L   I + + L +   F+V  P    L    E  ++ 
Sbjct: 35  DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG
Sbjct: 94  PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFG 150

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179
           ++  +++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +    
Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRT 210

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                 +  +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q 
Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270

Query: 240 EIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           E  +       L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +          N P                    + +  KE   NYE++T        
Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQ 388

Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +  + R ++AV V          G        ++ L  I +++    G +  RGD + + 
Sbjct: 389 SGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVL 448

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           SM F E ++     V +      +       +ALV ++  L+   L   A+++L N    
Sbjct: 449 SMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILV---LVRPAMKKLINPAAD 505

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              ++ G   +           G   +     +  +              N +  +    
Sbjct: 506 DDDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLK 556

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            +  ++    E  A++++ W ++
Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579


>gi|254291370|ref|ZP_04962163.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226]
 gi|150422700|gb|EDN14654.1| flagellar M-ring protein FliF [Vibrio cholerae AM-19226]
          Length = 580

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 211/563 (37%), Gaps = 30/563 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++  +   +   L   R ++L   I + + L +   F+V  P    L    E  ++ 
Sbjct: 35  DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG
Sbjct: 94  PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFG 150

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179
           ++  +++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +    
Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRT 210

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                 +  +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q 
Sbjct: 211 GANLKQEEVDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270

Query: 240 EIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           E  +       L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +          N P                    + +  KE   NYE++T        
Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQ 388

Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +  + R ++AV V          G        ++ L  I +++    G +  RGD + + 
Sbjct: 389 SGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVL 448

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           SM F E ++     V +      +       +ALV ++  L+   L   A+++L N    
Sbjct: 449 SMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILV---LVRPAMKKLINPAAD 505

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              ++ G   +           G   +     +  +              N +  +    
Sbjct: 506 NDDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLK 556

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            +  ++    E  A++++ W ++
Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579


>gi|331645402|ref|ZP_08346506.1| flagellar M-ring protein FliF [Escherichia coli M605]
 gi|331045564|gb|EGI17690.1| flagellar M-ring protein FliF [Escherichia coli M605]
          Length = 548

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 108/544 (19%), Positives = 213/544 (39%), Gaps = 39/544 (7%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L+    + V +   + +  +  +  Y +LY + E   V++I   L    + +RI      
Sbjct: 27  LMAGVGLAVAVTAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQ 86

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +   R+LEGE+A++
Sbjct: 87  ILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGELAQS 145

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAV 199
           I S+  + +ARVH+ + +  SF          +  V +            AI HLV+ ++
Sbjct: 146 IMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQVNAIVHLVSGSI 205

Query: 200 PNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN----KALAAFLGV 255
           P L    V+V+D  G LLT        +  +      I  +I+  I       L + +G 
Sbjct: 206 PGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKIRASVANVLDSLVGT 265

Query: 256 DNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHV 315
            N+R +V+ +L++ T    +  Y       +  R                     N P +
Sbjct: 266 GNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMGVPGSLSNRPPI 322

Query: 316 SDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTE 370
           +  ++             +   E + +Y  +       H  + ++RL++AVV+N+     
Sbjct: 323 AANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNVAVVLNQNA--- 379

Query: 371 VLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
                A +        ++  +++ A GI+++RGD ++++ ++F+   +     + +   D
Sbjct: 380 ----PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFVPQAVPVEPVIPLWKDD 435

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
            +       +  +   +  LL+ F  +  L +      A       +++  P        
Sbjct: 436 SVLAW----VRLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAVSEPWIAMPEEE 491

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                         N D+ S   +      S   +     L  +   + +R A++LR+W 
Sbjct: 492 ------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDTDRVAEVLRQWI 539

Query: 551 RSEI 554
            S  
Sbjct: 540 TSNE 543


>gi|15642132|ref|NP_231764.1| flagellar MS-ring protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121727194|ref|ZP_01680361.1| flagellar M-ring protein FliF [Vibrio cholerae V52]
 gi|147674591|ref|YP_001217656.1| flagellar MS-ring protein [Vibrio cholerae O395]
 gi|153801651|ref|ZP_01956237.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3]
 gi|153818978|ref|ZP_01971645.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457]
 gi|153822880|ref|ZP_01975547.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|227082258|ref|YP_002810809.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2]
 gi|229507782|ref|ZP_04397287.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286]
 gi|229511981|ref|ZP_04401460.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|229513784|ref|ZP_04403246.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21]
 gi|229519117|ref|ZP_04408560.1| flagellar M-ring protein FliF [Vibrio cholerae RC9]
 gi|229522086|ref|ZP_04411503.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80]
 gi|229607327|ref|YP_002877975.1| flagellar MS-ring protein [Vibrio cholerae MJ-1236]
 gi|254226365|ref|ZP_04919954.1| flagellar M-ring protein FliF [Vibrio cholerae V51]
 gi|254849219|ref|ZP_05238569.1| flagellar MS-ring protein [Vibrio cholerae MO10]
 gi|262153482|ref|ZP_06028612.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1]
 gi|262167493|ref|ZP_06035199.1| flagellar M-ring protein FliF [Vibrio cholerae RC27]
 gi|298497845|ref|ZP_07007652.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757]
 gi|9656684|gb|AAF95278.1| flagellar M-ring protein FliF [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630439|gb|EAX62832.1| flagellar M-ring protein FliF [Vibrio cholerae V52]
 gi|124122828|gb|EAY41571.1| flagellar M-ring protein FliF [Vibrio cholerae MZO-3]
 gi|125621115|gb|EAZ49460.1| flagellar M-ring protein FliF [Vibrio cholerae V51]
 gi|126510473|gb|EAZ73067.1| flagellar M-ring protein FliF [Vibrio cholerae NCTC 8457]
 gi|126519576|gb|EAZ76799.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|146316474|gb|ABQ21013.1| flagellar M-ring protein FliF [Vibrio cholerae O395]
 gi|227010146|gb|ACP06358.1| flagellar M-ring protein FliF [Vibrio cholerae M66-2]
 gi|227014029|gb|ACP10239.1| flagellar M-ring protein FliF [Vibrio cholerae O395]
 gi|229341011|gb|EEO06016.1| flagellar M-ring protein FliF [Vibrio cholerae TM 11079-80]
 gi|229343806|gb|EEO08781.1| flagellar M-ring protein FliF [Vibrio cholerae RC9]
 gi|229348965|gb|EEO13922.1| flagellar M-ring protein FliF [Vibrio cholerae TMA 21]
 gi|229351946|gb|EEO16887.1| flagellar M-ring protein FliF [Vibrio cholerae B33]
 gi|229355287|gb|EEO20208.1| flagellar M-ring protein FliF [Vibrio cholerae BX 330286]
 gi|229369982|gb|ACQ60405.1| flagellar M-ring protein FliF [Vibrio cholerae MJ-1236]
 gi|254844924|gb|EET23338.1| flagellar MS-ring protein [Vibrio cholerae MO10]
 gi|262024065|gb|EEY42760.1| flagellar M-ring protein FliF [Vibrio cholerae RC27]
 gi|262030719|gb|EEY49353.1| flagellar M-ring protein FliF [Vibrio cholerae INDRE 91/1]
 gi|297542178|gb|EFH78228.1| flagellar M-ring protein FliF [Vibrio cholerae MAK 757]
          Length = 580

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 211/563 (37%), Gaps = 30/563 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++  +   +   L   R ++L   I + + L +   F+V  P    L    E  ++ 
Sbjct: 35  DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +    +++  +G++I VP S     ++ +   GL + +  +G E+  +   FG
Sbjct: 94  PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQNRQAGDEILMQDMGFG 150

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179
           ++  +++     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +    
Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQVNKARVLLALPKQSVFVRHNQEASASVFLTVRT 210

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                 +  +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q 
Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270

Query: 240 EIEMNIN--KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           E  +       L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +          N P                    + +  KE   NYE++T        
Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNYELDTTISHERKQ 388

Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +  + R ++AV V          G        ++ L  I +++    G +  RGD + + 
Sbjct: 389 SGVINRQTVAVAVKSRSSVNPDTGEVTYTPLSEADLNSIRQVLIGTVGYSENRGDLLNVL 448

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           SM F E ++     V +      +       +ALV ++  L+   L   A+++L N    
Sbjct: 449 SMPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVILV---LVRPAMKKLINPAAD 505

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              ++ G   +           G   +     +  +              N +  +    
Sbjct: 506 NDDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLK 556

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            +  ++    E  A++++ W ++
Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579


>gi|149908457|ref|ZP_01897120.1| flagellar biosynthesis; basal-body MS(membrane
           andsupramembrane)-ring and collar protein [Moritella sp.
           PE36]
 gi|149808620|gb|EDM68555.1| flagellar biosynthesis; basal-body MS(membrane
           andsupramembrane)-ring and collar protein [Moritella sp.
           PE36]
          Length = 569

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 94/559 (16%), Positives = 215/559 (38%), Gaps = 27/559 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +Q    F   T+    R +IL   + + + L +    +   P    L      +++    
Sbjct: 27  EQKSSAFGFFTNADILRQIILILALAISLTLVVFILLWGKEPEMRPL-GTYPTAELIETL 85

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  ID+ I  NG ++SV +      ++ L   GL ++    G ++  +   FG++ 
Sbjct: 86  DFLDQEKIDYTI--NGDTVSVSAEQYQNIKLRLRRSGLTTTELQ-GDDILMQDMGFGVSQ 142

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NP 182
            ++        E +IAR ++    +  A+V + +P    F K   +P+A+V++       
Sbjct: 143 RVERERLKLGRERQIARALEEFKQVSKAQVLLAIPKENVFAKRNKKPSATVVLTVRNSAA 202

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
              ++ +++  LVA+AV  L+   VT+ D  G+LL +   +       +   +V+  + E
Sbjct: 203 LSQENIDSMVQLVASAVQGLEPTRVTLTDQNGRLLNSGSQDMLAAKGRREFEMVKNHERE 262

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LGV N+ + V   ++    +  +  ++PD    RS  L +  ++S  +
Sbjct: 263 YRTKIDSILMPILGVSNYTAEVDVSMDFSVTEQTQKRFNPDLPAVRSEMLLE--RQSFGN 320

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLE------NTDKKEEQSNYEINTKSIATTHDNYKL 354
             +       N P +         +           +KE   NYE++T    T      +
Sbjct: 321 GNQGIPGALTNQPPLDADIPEEADAGNAAAGPIGQSQKESTRNYELDTTISHTKSQTGVI 380

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS++V ++        G    + +  + +A I +++    G N  RGD + + ++ F 
Sbjct: 381 QRLSVSVAIDYINSVGADGALVREPRSQAEIANIRRVLQGGIGFNVNRGDNLEVVAIPFN 440

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
             +L     + +   +     F   I     L+  +++    +  + +    ++ ++   
Sbjct: 441 RPELTAMTDLPIWEEE----WFWRAIRIAASLLVIVVLIIAIIRPMIKRLINNEPEENLE 496

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                +S       +         +  D+     F+         N +  +     +  +
Sbjct: 497 DLDLGISAIENDEDMQL-------LTADTEGDTDFAMRSGHLQLPNLHKDEDLLEAVRAL 549

Query: 535 IEINEERFAKILRKWARSE 553
           +    +  A ++++W   +
Sbjct: 550 VANEPDLTALVIKEWMIED 568


>gi|269965705|ref|ZP_06179818.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
 gi|269829773|gb|EEZ84009.1| flagellar M-ring protein [Vibrio alginolyticus 40B]
          Length = 580

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 212/558 (37%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++    +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + + +KE   N+E++T           + R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R      G        +S +  I +++    G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +        +      S       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 454 PEDEQLEEPPIWEHPNFSDWVRWFASALVIIVVVLV---LVRPAMKKLLNPTSDDEDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMNDN 579


>gi|332140582|ref|YP_004426320.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550604|gb|AEA97322.1| flagellar MS-ring protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 564

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 215/561 (38%), Gaps = 30/561 (5%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +    F  +  S    R + L  V+++ + + +    +   P Y  L  K+E  ++    
Sbjct: 23  ENKSGFMDTLGSADMMRQMALVVVLVICVAIAIFILIWSQEPDYRPL-AKMETQELIETL 81

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             +    I++++   G+++ V S      R+ +  QGL ++SS++G ++  +   FG++ 
Sbjct: 82  DYMDANQIEYKL--EGNTVYVRSDEFQNIRLGMTRQGL-TNSSDAGTDIIMQDMGFGVSQ 138

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++      A E +IA TI+ I+ I  ARV +  P    F +   + +A+V++ A     
Sbjct: 139 RVEMERLKHAREQQIAATIEDIASIQKARVLLATPKENVFARREKKASATVVLTAKRGAV 198

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV--QAIQHE 240
              + A+A+  +VA+AV N++   VTV DS G+LL +   +             +  + E
Sbjct: 199 IAGEEADAVVDIVASAVQNMEPSKVTVTDSNGRLLNSGSQDSMSARARKEYEIERQREQE 258

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I+  L   LG+ N+ +     ++    +  +  Y+PD    RS  + ++   S   
Sbjct: 259 YLEKIDAILIPVLGIGNYTAQADVAMDFTAIEQTQRSYNPDLPAVRSEMIVEE--NSVGG 316

Query: 301 QPESAVTVEQNMPHVSDRKVPLP-----RSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                     N P +             +++     KE   NYE++T    T      + 
Sbjct: 317 GVGGIPGALSNQPPLDSNIPENAVGGSQQTMPGRTAKESTRNYELDTTISHTKKQTGVIR 376

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLS++V V+  ++    G      +    +  I +++    G +  RGD++ + S+ F  
Sbjct: 377 RLSVSVAVDYTQVAGEDGAMTPTPRKQEEILNIRRLLQGGIGFDVTRGDSLEVVSVPFTR 436

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA--KKGE 473
                     +         F  ++  ++  +  +++    +  + R     D   +  E
Sbjct: 437 MDTGEIEDAPLWEQPG----FLPILKLVIGGLVIIVLIIFVIRPMLRRLINPDETNEADE 492

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                 L     + ++ T       +        +           + +  +     +  
Sbjct: 493 FDADEGLDLGDDTISMLTSDFDEGQVGFAPDGSLMLP---------DLHKDEDVLKAVRA 543

Query: 534 MIEINEERFAKILRKWARSEI 554
           ++    E  A++++ W   + 
Sbjct: 544 LVANEPELSAQVVKGWLMQDE 564


>gi|323705446|ref|ZP_08117021.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535348|gb|EGB25124.1| flagellar M-ring protein FliF [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 502

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 99/561 (17%), Positives = 204/561 (36%), Gaps = 74/561 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +Q+  F+       + + + +  + L+ I       + +N P+Y+ LY  L   D  
Sbjct: 7   NIREQIDNFWNKF---DKKQKIQIGIIALLLIGSIALLLYILNRPNYEVLYSGLSTKDAG 63

Query: 62  RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L  E  I ++I  +GS+I VP+    +AR+ LA +G+P    +    +    NS 
Sbjct: 64  TVVDKLKNELKIPYKIEGDGSTILVPAQYKDEARMQLATEGIPQDGFSFSDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  ++ EI  T+++I G+  A+V+IV+PD  +F        +     + 
Sbjct: 121 ATTDQERREKYIYFVQNEIQNTLKTIDGVQDAKVNIVVPDQSNFVLSNSDNSSTAAVMLQ 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235
           ++       +    I + V+ +V  L    VT++D  GK+L A      +      ++  
Sbjct: 181 LKPGVTLTNQQINGITNFVSKSVQGLSPDKVTIIDGNGKVLVAQNDSSLDGASSQYALQM 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q++++ NI   L    G  N        LN D Q   ++ + P   ++ + RS +  K
Sbjct: 241 KVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTIK 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +     ++          N P  S           +  K +   NYEIN      T    
Sbjct: 301 EIANGSSNGA--PAGTATNNPPGSTTYTTQNNGNSSYSKTDTTINYEINQIKTTLTSAQG 358

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K++ +S++VVVN                  +   ++  +VS A G  +    ++++  + 
Sbjct: 359 KIQNISLSVVVNNSN------------LTPAMKQQLTDLVSNAAGGKNV---SVSVMGIK 403

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  + L             +           + ++G L++     +A+++   +      
Sbjct: 404 FNNDLLNQMKNNGKQSFPYVW----------LIILGALVLAGGVFYAMKKRSKLAVPSAK 453

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                S++ P                                           +   ++ 
Sbjct: 454 SEEAISMVEPLEDIEVHDE--------------------------------RDEKKKQIE 481

Query: 533 HMIEINEERFAKILRKWARSE 553
             I+   +  A+++R W   E
Sbjct: 482 KFIKQKPDIVAQLIRTWLNEE 502


>gi|307721566|ref|YP_003892706.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294]
 gi|306979659|gb|ADN09694.1| flagellar M-ring protein FliF [Sulfurimonas autotrophica DSM 16294]
          Length = 569

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 124/571 (21%), Positives = 217/571 (38%), Gaps = 25/571 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56
           M       Q       L + + +I+A+ ++  +   +    F         Y+ L+  L 
Sbjct: 1   MDFKVLFSQLSVLYAKLTKQQKIIIAAAVVGIVAFLIFLVVFTAKKTSGSAYEVLFDALT 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D  ++   L + NI ++I  N + I VP  +V K RI +A+ G+P +S   G+ELFDK
Sbjct: 61  PADAAKVVEQLEKDNITYKIEAN-NVIKVPRDVVYKERISIASLGIPKNSG-VGFELFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TSF Q+I  +RALEGE++RTI ++S +  A V + +P    F      PTASVM
Sbjct: 119 -QEFGATSFDQKIKHLRALEGELSRTITALSPVEKATVSLALPKDTLFVSKQVDPTASVM 177

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSL 231
           ++         K    I++LV+AAVP L   +V ++DS G  L  N+    +        
Sbjct: 178 VQLADGRMLTPKQIRGIKNLVSAAVPKLKSSNVMLIDSDGVTLGDNDEMAQMSELSVVQQ 237

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
                 + + +  I   +A F+ G D   + V  E +   +      YDP++ V      
Sbjct: 238 KYKIKEEKKRQEKIIDVIAPFVGGKDKVVAQVTIEFDFSQKNSTSEKYDPENVVRSEQVN 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            +  + S   +         N+  V        +++E   K    +NYE+      T   
Sbjct: 298 EEKREGSSPKEVGGVPGTVSNIGPVQGL--ASNKTVEKYSKNSGTTNYEVGKTVSTTKSQ 355

Query: 351 NYKLERLSIAVVVNKGRLT------EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
             +++R++ AVVV+    T                  D+ +  +  + S + GI+  RGD
Sbjct: 356 FARIKRITAAVVVDGKYKTKVDKDGNPTEEMEYVPLDDADINALTSLASRSIGIDPNRGD 415

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I++ ++ F               ++       T +     L   L V  L     +++ 
Sbjct: 416 QISVQNLQFERALTNKGVQ----GVNQAIIFSETYLAPFSGLFKYLFVLILLFILYKKVI 471

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                K  E+  +      P                     +       +     +    
Sbjct: 472 APFADKMLEISKEDEELVAPSLEIEEEEGEDLVEKVQTMRKKVEDQLGMSSNFNEDDLKH 531

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +    ++  M E   E  A +L      E E
Sbjct: 532 EVILEKVRTMAEDTPEEVASLLEALLSEESE 562


>gi|91223544|ref|ZP_01258809.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
 gi|91191630|gb|EAS77894.1| flagellar M-ring protein [Vibrio alginolyticus 12G01]
          Length = 580

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 212/558 (37%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGTNLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++    +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGYGNYTAQVDIQMDFSAVEQTRKRFDPNTPATRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + + +KE   N+E++T           + R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R      G        +S +  I +++    G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSESEINAIRQVLIGTVGFDQGRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +        +      S       +ALV +V  L+   L   A+++L N     + E+ 
Sbjct: 454 PEAEQLEEPPIWEHPNFSDWVRWFASALVIIVVVLV---LVRPAMKKLLNPTSDDEDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMNDN 579


>gi|148976413|ref|ZP_01813119.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
 gi|145964236|gb|EDK29492.1| flagellar M-ring protein [Vibrionales bacterium SWAT-3]
          Length = 580

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 95/557 (17%), Positives = 208/557 (37%), Gaps = 30/557 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 41  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  ++
Sbjct: 100 DQQKIEYSL--EGNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K 
Sbjct: 157 QERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243
              +++  +VA+AVP +    +TV D  G+LL++   +     +       +  +  +  
Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALRE 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +L+    +     +DP++   RS    +D     T    
Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTV--A 334

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                  + + +  KE   N+E++T           + R
Sbjct: 335 GIPGALSNQPPSDASIPQDVAQMKDGAMTGQGSVHKEATRNFELDTTISHERKQTGTVNR 394

Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V + ++  +    G         S +  I +++    G +  RGD + + SM F  
Sbjct: 395 QTVSVAIKDRQSINPDTGEVVHTPIPASEINAIRQVLIGTVGFDESRGDLLNVLSMQFAP 454

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                   V +      +       +ALV +V  L+   L   A+++L N       ++ 
Sbjct: 455 QITDVVPDVPIWEHPNFNDWVRWFASALVIIVVVLV---LVRPAIKKLLNPAADNDEQMY 511

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   +           G                     +     N +  +     +  ++
Sbjct: 512 GPDGMPIGADGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562

Query: 536 EINEERFAKILRKWARS 552
               E  A++++ W   
Sbjct: 563 ANEPELAAQVVKNWMAD 579


>gi|331671787|ref|ZP_08372583.1| flagellar M-ring protein FliF [Escherichia coli TA280]
 gi|331070776|gb|EGI42135.1| flagellar M-ring protein FliF [Escherichia coli TA280]
          Length = 552

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/555 (20%), Positives = 217/555 (39%), Gaps = 36/555 (6%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+        +     +     A++  +++ A GI+ +RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNAPAMKNWK---PEQTAQLTAQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 428

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 429 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 484

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 485 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 532

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 533 DRVAEVLRQWITSNE 547


>gi|293408353|ref|ZP_06652192.1| flagellar M-ring protein FliF [Escherichia coli B354]
 gi|291471531|gb|EFF14014.1| flagellar M-ring protein FliF [Escherichia coli B354]
          Length = 548

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+ +RGD +T++ ++F+     
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFVPQVAP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPVIPLWKDDCVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|146309431|ref|YP_001189896.1| flagellar MS-ring protein [Pseudomonas mendocina ymp]
 gi|145577632|gb|ABP87164.1| flagellar M-ring protein FliF [Pseudomonas mendocina ymp]
          Length = 559

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 104/537 (19%), Positives = 201/537 (37%), Gaps = 26/537 (4%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKAR 94
           + +    + +   +  LY   E      +   L    I +R+      + V    +G+AR
Sbjct: 34  VGVVFYLWRDQGSFRPLYGTGEAYPAAEVMQVLDGDAISYRLHPQSGQVLVREDQLGRAR 93

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
           + LAA+G+      +GYELFDK    G + F+Q++   R+LEGE+ART+ ++ G+  ARV
Sbjct: 94  MLLAAKGV-QVKVPAGYELFDKDEPLGTSQFVQDVRLKRSLEGELARTVMALKGVEGARV 152

Query: 155 HIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD 211
           H+ + +  SF   ++   + +  + +        +   AI +LVA +VP LD  +V V+D
Sbjct: 153 HLALQESSSFVVGKREPGKASVMLQLAPGYKLAPEQVSAIVNLVAGSVPQLDAANVQVVD 212

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
             G LL+          ++  +V   Q++   N    LA  LG  N+R +V A+++   +
Sbjct: 213 QYGALLSRGIDTLGGPVQNWQVVDDYQNKAVANAEAVLAPVLGNGNYRISVAADIDFSQK 272

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---------PL 322
           +     Y    +  R        +               N P     +            
Sbjct: 273 EETFQAY---GETPRLRNEVLRDESVLDQLALGVPGSLANRPPQPAPEPVEGQPPAEGEA 329

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
                 + +KE     + +       H  + L + SIAVV+N     E        G   
Sbjct: 330 ANKAATSLRKESNRQLDYDQSVTHVKHAPFSLRQQSIAVVLNAAAAPE-------GGWTA 382

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
              AE+  +V +A G N  RGD +T++   F       +    + + + +      +   
Sbjct: 383 EARAELEAMVKSAVGFNQARGDLLTLSVFPFTAAGADAAQGEALPWWENVK--VHELARL 440

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN-DNIAL 501
            VF + +LL+  + +    R              +        +      L+    +   
Sbjct: 441 GVFALISLLLLLMVVRPAVRSLTQRSQPGVAAAVQGDEQLALHAERTAERLLARVGDEPP 500

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558
            ++     S    ++        +     L  + + + ER ++++++W      D  
Sbjct: 501 GATVLGELSPLSEIRLPAPGSGLELQIEHLQMLAKNDPERVSEVIKQWIGRNERDLN 557


>gi|300936110|ref|ZP_07151050.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
 gi|300458730|gb|EFK22223.1| flagellar M-ring protein FliF [Escherichia coli MS 21-1]
          Length = 551

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 218/558 (39%), Gaps = 43/558 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++      +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDK--------KEEQSNYEINTKSIATTHDNYKLER 356
                 N P V+  +V       + ++         E + +Y  +       H  + ++R
Sbjct: 312 VPGSLSNRPPVAPNQVTNGAMPADENRSPEALSKHSESKRDYSYDRSVQHIQHPGFTVKR 371

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           L++AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+  
Sbjct: 372 LNVAVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQ 424

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
            +     + +   D +       +  +   +  LL+ F  +  + +      A       
Sbjct: 425 AVPVEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEP 480

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           +++  P                      N D+ S   +      S   +     L  +  
Sbjct: 481 EAVSEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAM 528

Query: 537 INEERFAKILRKWARSEI 554
            + +R A++LR+W  S  
Sbjct: 529 SDTDRVAEVLRQWITSNE 546


>gi|327254536|gb|EGE66152.1| flagellar M-ring protein FliF [Escherichia coli STEC_7v]
          Length = 548

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + FMQ +  
Sbjct: 76  LTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFMQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P ++  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  L +      A       ++I
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAI 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAVPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|90411023|ref|ZP_01219037.1| flagellar M-ring protein [Photobacterium profundum 3TCK]
 gi|90328236|gb|EAS44547.1| flagellar M-ring protein [Photobacterium profundum 3TCK]
          Length = 580

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/552 (17%), Positives = 209/552 (37%), Gaps = 28/552 (5%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L   R +IL   + + + L +    ++  P    L    + +++  I     +  + 
Sbjct: 44  LGNLDLLRQVILVLSVSICVALIVMMVMWIKEPEMRPL-GTYDTAELITILDHFDQTKVK 102

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + +  +G++I VP+      ++ L   GL +++   G E+  +   FG++  ++      
Sbjct: 103 YEL--DGNTIRVPADNFSSIQLGLTRAGL-NNAVAEGDEILLQDMGFGVSQRLEGERLKL 159

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
           + E ++AR I+ I  +  A+V + MP    F +     +A+V +        K    ++I
Sbjct: 160 SRERQLARAIEQIRQVRKAQVLLAMPKQSVFVRHNQEASATVFLTLGTNGSLKQPEVDSI 219

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEMNINKAL 249
             +VA+AVP+L    VTV D  G+LL++   + +   +       +  +  +   I+  L
Sbjct: 220 VDMVASAVPSLKPNRVTVTDQHGRLLSSGTEDASATAQRKEYELERKQEQAMREKIDSIL 279

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
              LG  N+ S V   ++   Q+     +DP +   RS    ++      +         
Sbjct: 280 IPILGFGNYTSQVDVAMDFSAQEETRKRFDPSTPSTRSEYTVENYNNG--NIVAGIPGAL 337

Query: 310 QNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
            N P                  S +    +E   N+E++T           + R +++V 
Sbjct: 338 SNQPPADASIPQDIADMQSGRGSSDGASHREATRNFELDTVISHLRAQTGTVSRQTVSVA 397

Query: 363 VNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           V+   LT    G        ++ L +I +++    G +  RGD + + +M F        
Sbjct: 398 VDYKSLTNPETGEVTRVPVSEAELLKIRRLLMGGVGFSEARGDMLEVIAMPFALPTQELI 457

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
             + +      +     +  ALV +V  ++   L   A+++L     A  G    K+ L 
Sbjct: 458 AELPIWENPNFNTWVRWLAAALVIIVIVIV---LIRPAMKKLLYPHQAADGTPLDKNGLP 514

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
                  +       D++       D F  S +     N +  +     +  ++    + 
Sbjct: 515 ILSSGDDIDLIGSELDSV-------DGFELSSSNLDLPNLHKDEDLLKAVRALVANEPDL 567

Query: 542 FAKILRKWARSE 553
            A++++ W   +
Sbjct: 568 AAQVVKNWVNED 579


>gi|91792682|ref|YP_562333.1| flagellar MS-ring protein [Shewanella denitrificans OS217]
 gi|91714684|gb|ABE54610.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217]
          Length = 566

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/561 (16%), Positives = 205/561 (36%), Gaps = 25/561 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       +       R + +   + V + L +    +   P Y  L  K++ +++ ++ 
Sbjct: 20  ENKSGLMSNIGGTDFLRQITMILALAVCLALAVFVMMWAQEPEYRPL-GKMDTAEMIQVL 78

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I + I  +   I VP       ++ L+  G+ S+   + Y    K + FG++ 
Sbjct: 79  DVLDKNQIKYEIQLD--VIKVPEDQYQDIKLILSRAGIESNVDTNDY--LSKDSGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPS 183
            M++     + E  +AR I+ +  +  A+V + +P    F +  ++P+A+V++       
Sbjct: 135 RMEQARLKHSQELNLARVIEELKSVSRAKVILALPKENVFARNQSQPSATVVVNVRRGSL 194

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241
             +  +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +VQ  + E 
Sbjct: 195 GQEEIDAIVDIVASAVQGLEPERVTVTDSNGRLLNSGSQDGASARARRELELVQNQEAEY 254

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG +NF S V   ++    +     + PD    RS    +     E   
Sbjct: 255 RKKIESILMPILGPENFTSEVDVTMDFTAIEQTAKRFAPDLPALRSEMTIETNTNGERV- 313

Query: 302 PESAVTVEQNMPHVSDRKVPLPR------SLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                    N P +               +      +E   N+E++T    T      + 
Sbjct: 314 -GGIPGALSNQPPMESDIPENAGEATESVASNGNVHREATRNFELDTTISHTRQQIGVVR 372

Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           R+S++V ++         G+     + +  LA I +++  A G +++RGD + + ++ F+
Sbjct: 373 RVSVSVAIDFKAGAAGEDGQVTRVARTEQELANIRRLLEGAVGFSAQRGDMLEVVTVPFM 432

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           +  L       +         F   I   +  +  L++    +  + R           V
Sbjct: 433 DQLLEELPAPDLWEQP----WFWRAIKLGIGAIVILVLILAVVRPMLRRLI----DPEGV 484

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                       + +      +    L++   +            N +        +  +
Sbjct: 485 NMPDDTRLGHELAEIEDQYAADTLGMLNTKEAEYSYADDGSIHIPNLHKDDDMIKAIRAL 544

Query: 535 IEINEERFAKILRKWARSEIE 555
           +    E   ++++ W   + +
Sbjct: 545 VANEPELSTQVVKNWLLEDAQ 565


>gi|153947902|ref|YP_001399623.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 31758]
 gi|152959397|gb|ABS46858.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis IP
           31758]
          Length = 546

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 121/559 (21%), Positives = 228/559 (40%), Gaps = 27/559 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q       LG     IL S   + +   +    + +S  Y  L+   E   V +
Sbjct: 1   MLDKIKQKLSP-GQLGENTKTILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPVTQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF    +     +  + +R 
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNRSDNSASVVLRLRY 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD ++      +   +
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAERYGPDPRIND---ENIQQE 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P    +    P ++    + + Q  Y  +       +  YKLE
Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINVMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+ L+      F     ++R             
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVL---WFGVRPLMKRYSRKGSENLPLAI 462

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +               + +   A  + +      S +L  + +   +K     L  + 
Sbjct: 463 SSASADEALDHVDTGVDGVESSPRAETAFSASSLWESDDLPEQGSGLETK--IAHLQQLA 520

Query: 536 EINEERFAKILRKWARSEI 554
           +   ER A+++++W  S  
Sbjct: 521 QSETERTAEVIKQWINSNE 539


>gi|170682472|ref|YP_001742357.1| flagellar MS-ring protein [Escherichia coli SMS-3-5]
 gi|170520190|gb|ACB18368.1| lateral flagellar M-ring protein LfiF [Escherichia coli SMS-3-5]
          Length = 548

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++      +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSNIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P ++  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPIAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+ +RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|262404479|ref|ZP_06081034.1| flagellar M-ring protein FliF [Vibrio sp. RC586]
 gi|262349511|gb|EEY98649.1| flagellar M-ring protein FliF [Vibrio sp. RC586]
          Length = 580

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/563 (17%), Positives = 214/563 (38%), Gaps = 30/563 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++  +   +   L   R ++L   I + + L +   F+V  P    L    E  ++ 
Sbjct: 35  DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG
Sbjct: 94  PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFG 150

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRA 179
           ++  +++     + E ++A+ I+ +  I  ARV + +P    F +     +ASV   +R 
Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRT 210

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAI 237
                 +  +A+  +VA+AVP +    VTV D  G+LL++   +       K   + +  
Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +   I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 271 EDVLRDKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +          N P                    + +  KE   N+E++T        
Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNFELDTTISHERKQ 388

Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +  + R ++AV V          G        ++ L  I +I+    G +  RGD + + 
Sbjct: 389 SGVVNRQTVAVAVKSRSNVNPDTGEITYTPLSEADLNSIRQILIGTVGYSENRGDLLNVL 448

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           SM F E +      + +      +     + +ALV ++  L+   L   A+++L N    
Sbjct: 449 SMQFAEPEAEQIADIPIWENPNFNDWIRWLASALVIIIVVLV---LVRPAMKKLINPAAD 505

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              ++ G   +           G   +     +  +              N +  +    
Sbjct: 506 SDDQMYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLP---------NLHKDEDVLK 556

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            +  ++    E  A++++ W ++
Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579


>gi|323975944|gb|EGB71038.1| flagellar M-ring protein FliF [Escherichia coli TW10509]
          Length = 548

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEMLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G+ N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGMGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P ++  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPIAANQMTNGAEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +          +   +  LL+ F  +  L +      A       ++I
Sbjct: 425 VEPVIPLWKDDSVLAWG----RLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAI 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAVPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|28899023|ref|NP_798628.1| flagellar MS-ring protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836977|ref|ZP_01989644.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|260365231|ref|ZP_05777788.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|260878781|ref|ZP_05891136.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|260897376|ref|ZP_05905872.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|260899935|ref|ZP_05908330.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|4322017|gb|AAD15920.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus]
 gi|28807242|dbj|BAC60512.1| polar flagellar M-ring protein FliF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749750|gb|EDM60495.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ3810]
 gi|308088295|gb|EFO37990.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus Peru-466]
 gi|308094213|gb|EFO43908.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AN-5034]
 gi|308107383|gb|EFO44923.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus AQ4037]
 gi|308115404|gb|EFO52944.1| flagellar M-ring protein FliF [Vibrio parahaemolyticus K5030]
 gi|328474440|gb|EGF45245.1| flagellar MS-ring protein [Vibrio parahaemolyticus 10329]
          Length = 580

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/558 (16%), Positives = 210/558 (37%), Gaps = 30/558 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    +  ++  +   L
Sbjct: 40  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYDTEELIPVLDYL 98

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I++++  +G+++SV SS     ++ +   G+ + ++ +G ++  +   FG++  ++
Sbjct: 99  DQQKINYKL--DGNTVSVESSEYNSIKLGMVRSGV-NQATEAGDDILLQDMGFGVSQRLE 155

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  ARV + +P    F +     +ASV +     +  K 
Sbjct: 156 QERLKLSRERQLAQAIEEMKQVRKARVLLALPKHSVFVRHNQEASASVFLTLSTGANLKQ 215

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEM 243
              ++I  +VA+AVP +    +TV D  G+LL++   +       K   + ++ +  +  
Sbjct: 216 QEVDSIVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPASAARRKEQELERSQEQALRE 275

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +++    +     +DP++   RS    +D      +   
Sbjct: 276 KIDSVLLPILGFGNYTAQVDIQMDFSAVEQTRKRFDPNTPSTRSEYALEDYNNG--NMVA 333

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + + +KE   N+E++T           + R
Sbjct: 334 GIPGALSNQPPADASIPQDVAQMKDGSVMGQGSVRKESTRNFELDTTISHERKQTGTVAR 393

Query: 357 LSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V +   R      G        +  +  I +++    G +  RGD + + S+ F E
Sbjct: 394 QTVSVAIKDRRQVNPDTGEVTYTPMSEGEINAIRQVLIGTVGFDQSRGDLLNVLSVKFAE 453

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +        +      +       +ALV +V  L+   L   A+++L N       E+ 
Sbjct: 454 PETEQLVDQPIWEHPNFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAGDDDDEMY 510

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   L           G                     +     N +  +     +  ++
Sbjct: 511 GPDGLPIGADGETSLIG---------SDIESSELFEFGSSIDLPNLHKDEDVLKAVRALV 561

Query: 536 EINEERFAKILRKWARSE 553
               E  A++++ W    
Sbjct: 562 ANEPELAAQVVKNWMNEN 579


>gi|260853453|ref|YP_003227344.1| putative lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257752102|dbj|BAI23604.1| predicted lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O26:H11 str. 11368]
 gi|323158008|gb|EFZ44109.1| flagellar M-ring protein FliF [Escherichia coli EPECa14]
          Length = 548

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244
            AI HLV+ ++P L    V+V+D  G LLT        +  +      I  +I+      
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPESEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|300854208|ref|YP_003779192.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528]
 gi|300434323|gb|ADK14090.1| flagellar M-ring protein FliF [Clostridium ljungdahlii DSM 13528]
          Length = 532

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/563 (19%), Positives = 209/563 (37%), Gaps = 46/563 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I             L R + +  + + +  +   +     +    Y  L+  L+ +D   
Sbjct: 4   ISQIFKNLIGKWKDLSRNKKIAFSVIAVGIVAALIFGGLTLGKTKYAVLFSNLDATDSAT 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    +D ++   GSSI VP   V K R+   ++ +  ++ + G+EL DK N FG 
Sbjct: 64  IYKQLQSDKVDAKVQ--GSSILVPKDQVDKIRMQTLSE-VQLTNGSQGFELLDKSN-FGQ 119

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAI 180
           T     I   RAL+GEI RTI+S+  I  ARVH+V+PD   F K     +ASV   ++  
Sbjct: 120 TDQQMNINYQRALQGEIERTIKSLPQIENARVHLVLPDNTEFVKDTQPGSASVTIKLKPG 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---------ANEMERNILGKSL 231
                   +A+  LV+ +V N+   +V V+D    LL+          +        K  
Sbjct: 180 QTLSQDQTKALVALVSGSVKNIPKENVEVIDDKLNLLSRDLYQNKSGDSSSSTIPADKQQ 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            + Q  + ++E  +   L    G +  +  + A+L+ D  Q     YDP +       + 
Sbjct: 240 ELQQKYEDDMEKRLLAMLEPIYGKNKVKVQINADLDFDAVQQDSTTYDPKN------VVV 293

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +   + T+   +       + +          +  N+ + E   NY+++     T    
Sbjct: 294 SEHTVNNTNTGATNNASTSPVDNNMSNTSVNNANGGNSTQNEVTRNYDVSKVEQKTIKAP 353

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             ++RL+ +V ++                 D+    I  +  +A G N  RGDTI + ++
Sbjct: 354 GSVKRLTASVALDGTV-------------DDATKTSIRNLAVSAIGYNQTRGDTINVEAI 400

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F      ++     +     ++     I     + G LL+  +    L R  + +D ++
Sbjct: 401 PFDTTAQDSAKKDLDAMQKAEAQANRNKIIIGASIAGALLIAAIVGFILWRRKHAEDEEE 460

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                                 +  D+      N+  F          +++V  +    +
Sbjct: 461 LFDEELGNTQGIDA--------VIGDDDLTKEQNKLKFKPVEFEHETEDTHVENE----I 508

Query: 532 LHMIEINEERFAKILRKWARSEI 554
               +   ++ A I++ W   + 
Sbjct: 509 KKYAKDKPDQVADIIKAWIAEDE 531


>gi|225181611|ref|ZP_03735052.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1]
 gi|225167719|gb|EEG76529.1| flagellar M-ring protein FliF [Dethiobacter alkaliphilus AHT 1]
          Length = 519

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 112/557 (20%), Positives = 206/557 (36%), Gaps = 57/557 (10%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++    +    L + + +    + +  I+        +  P    L+  LE  D  RI+ 
Sbjct: 11  RVQDLPEKWQQLSQRKKIAAIVMAVAIIVTLFFLGQAIARPRMALLFTGLEPVDAGRIAA 70

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L E N+ + + D G +I V   MV   RI LA+    +    SG+ELFD+ N  G T F
Sbjct: 71  RLQEMNVQYSLDDEGRTILVRQDMVDDVRIQLASDESLNIGGGSGFELFDQTN-LGATDF 129

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PS 183
            + +  +RAL+ E+ RTI  +  +  ARVH+ +P+   F +  A P+AS+++        
Sbjct: 130 NRRMDYLRALQEELRRTIVRLDEVEQARVHLALPEPSVFIQDSAEPSASIVLALSPVSRL 189

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKSLSIVQA 236
             +    I HLVA +V N+   +VTV+D+TG +L+                   L I ++
Sbjct: 190 DSERVRGIVHLVAGSVENMRPENVTVIDTTGNILSDQLDNLDPTKQLAEATMAQLDIKRS 249

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
            + E+E  +   L   LG     + + A+L+ D+ +   I +D +       +   +   
Sbjct: 250 FEKELERRVQVMLERILGPGQAIAMITADLDFDSHESTVITFDSEG--VPRSQTITEEYF 307

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                       + N+P           +    ++ +E +NYEIN  +        KL +
Sbjct: 308 EGAGVVPGEAGADSNIPGYPWVGGTGDST---YERYDETTNYEINETTERQIRAPGKLVQ 364

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           L+ +VVVN                  + + +I++ V AA G    RGD+I++  M F  +
Sbjct: 365 LNASVVVNDN----------GGQLSQAQVRQISEAVEAALGYQVGRGDSISVQGMSFDTS 414

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
              ++                  +      +  +++ F+ L A R         +     
Sbjct: 415 HQEDAMLAMEEAARREM--IERYVTIGAIALAAIIIFFVILRAFRAWRERQLEAELAAL- 471

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
                                                     +     ++   R+  + E
Sbjct: 472 -----------------------------ASAPKIQEEPAEEMEETPQQRLHKRVRDLAE 502

Query: 537 INEERFAKILRKWARSE 553
              E  A ++R W   E
Sbjct: 503 REPESVAHLIRAWLAEE 519


>gi|149188085|ref|ZP_01866380.1| flagellar M-ring protein [Vibrio shilonii AK1]
 gi|148838073|gb|EDL55015.1| flagellar M-ring protein [Vibrio shilonii AK1]
          Length = 582

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 102/551 (18%), Positives = 206/551 (37%), Gaps = 29/551 (5%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
             L   R ++L   I + + L +   F+V  P    L    E  ++  +   L +  + +
Sbjct: 49  GDLDLLRQIVLVLSISICVALIVMLFFWVKEPEMRPL-GVYETEELIPVLDYLDQKKVQY 107

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           ++   G+++SVP+S     ++ +   G+  +S N+G ++  +   FG++  +++     +
Sbjct: 108 KL--EGNALSVPASEYNNLKLDMVRAGINRAS-NTGDDILMQDMGFGVSQRLEQERLKLS 164

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR 192
            E ++ + I+ +  +  ARV + +P    F +     +ASV +          +  +++ 
Sbjct: 165 RERQLGKAIEQMKQVRTARVLLALPKQSVFVRHNQEASASVFLTLATGAVLRQQEVDSVV 224

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQHEIEMNINKALA 250
            +VA+AVP +    +TV D  G+LL+  + +       K   + Q  +  +   I+  L 
Sbjct: 225 DMVASAVPGMKPSRITVTDQHGRLLSSGSQDAASMARRKEQELEQNQEQALREKIDSVLI 284

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
             LG+ N+ + V  EL+    +     +DP++   RS    +D      +          
Sbjct: 285 PILGLGNYTAQVDIELDFSAVEQTRKRFDPNTPATRSEYTLEDYNNG--NVVAGVPGALS 342

Query: 311 NMPHVSDRKV-------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
           N P                    + +  KE   N+E++T        +  + R ++AV +
Sbjct: 343 NQPPADASIPTDVAQMKDGSIMGQGSVHKEATRNFELDTTISHERKQSGVVNRQTVAVAI 402

Query: 364 NKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
                     G    Q + +S LA I +++  A G N  RGD + + SM F E       
Sbjct: 403 KNRSSVNPDTGEVTYQPRSESELAAIRQVLIGAVGFNENRGDLLNVLSMTFEEPTTDLLP 462

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
            V +      +       +ALV +        + +  L R                 L  
Sbjct: 463 DVPIWEHPNFNDWIRWFASALVII--------VVVFVLIRPAMKKLLNPAAQEEDDQLYG 514

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
           P        G        +D S    FS   +L    N +  +     +  ++    E  
Sbjct: 515 PDGLPLGADGETSLIGTDIDGSELFEFSTGIDLP---NLHKDEDVLKAVRALVANEPELA 571

Query: 543 AKILRKWARSE 553
           A++++ W    
Sbjct: 572 AQVVKNWMAEN 582


>gi|59889767|emb|CAH19122.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli]
 gi|284920031|emb|CBG33087.1| lateral flagellar M-ring protein (FliF-like) [Escherichia coli 042]
          Length = 548

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDSVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREENVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+ +RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PAMKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|170737019|ref|YP_001778279.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
 gi|169819207|gb|ACA93789.1| flagellar M-ring protein FliF [Burkholderia cenocepacia MC0-3]
          Length = 548

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 206/546 (37%), Gaps = 28/546 (5%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
              S      L    ++ + +              Y  L+   E      +  AL    I
Sbjct: 24  RLPSPAALSKLAPIVILAISLAALTMMLMHRQDSRYKPLFGSQEAVVAADMMAALDAEGI 83

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +RI  +   + VP   +G AR+ LAA+G+       G E  DK +  G++ F+Q++   
Sbjct: 84  PYRIHPDSGQVLVPEQKLGAARMMLAAKGVV-GKLPEGLEQVDKSDPLGVSQFVQDVRFR 142

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAE 189
           R LEGE+ ++I ++  + +ARVH+ +    SF       +  +  + ++       +   
Sbjct: 143 RGLEGELTQSIMALEPVSSARVHLSIAKSASFILADGDKSSASVVLTLKPNRKLNKEQIA 202

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-SLSIVQAIQHEIEMNINKA 248
           AI  LVA +V NLD   VTV+D +G  L+A              +   ++ ++  NI + 
Sbjct: 203 AIVALVAGSVANLDPARVTVIDQSGNHLSAQIDLVLGNSTLDSELGAQMREQVLRNIREL 262

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   LG  NFR++V  EL+ D  +     Y    +  +  + +   ++            
Sbjct: 263 LTPVLGDGNFRASVAVELDHDRVEETREQY---GEAPKVTQEAIRDEKDIGQAALGVPGS 319

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
             N P  +           ++ K  +   Y  +   +       +++RL++AVV+N    
Sbjct: 320 LSNRP--APPSTASMPEAPHSAKNAQTRQYAYDRNVVQIKRSPVRVKRLNVAVVLNNAAA 377

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                    +    + LA+++ I+    GI++ R D +T++S+DF    +  S       
Sbjct: 378 PGGG-----KAWAPAQLAQVDTILRDGLGIDADRDDALTVSSLDFRGTPVTESQP----- 427

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
                 +  T+     + +G LL        L ++  I         G         ++ 
Sbjct: 428 WWKQPDNLVTIGTWAAWALGALLGFVFIFRPLLKVLRIW------ANGGRDPLSQGANAV 481

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                 P    A D+  Q +     NL    +          L H+   + ER A++++ 
Sbjct: 482 SGGPEAPALAAAADADTQPLLLADANLPPIGSGAD--VLIAHLKHLAAQDPERVAEVIKP 539

Query: 549 WARSEI 554
           W R + 
Sbjct: 540 WIRDDE 545


>gi|289523574|ref|ZP_06440428.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503266|gb|EFD24430.1| flagellar M-ring protein FliF [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 490

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 116/521 (22%), Positives = 196/521 (37%), Gaps = 64/521 (12%)

Query: 45  SPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPS 104
              Y+ L+  L+V D   I   L E+NI +R+  + ++I VP  +V + R+ L  +GLP 
Sbjct: 20  RERYEPLFSNLDVEDQAAIVNYLKESNIPYRVDPSFNAILVPRDVVYETRLSLVGEGLPR 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
             +  G+ELFDK    G+T F Q++  +RALEGE+ RTIQSI G+ + +V+IV+P+   F
Sbjct: 80  GGA-VGFELFDK-MKMGMTDFQQKVGYLRALEGELTRTIQSIRGVQSCKVNIVIPEQKLF 137

Query: 165 RKIGARPTASVMIRAINPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
            +     TASV++          +  +AI HLV+ +V  L   +V V+DS G +L+    
Sbjct: 138 LEEQFPATASVLLSLKPGFEMGPEQVKAIVHLVSHSVEGLSPDNVVVVDSKGAILSDMLD 197

Query: 223 ERN-------ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           E         +      + +  + E+E    + L    G       V   LN D ++   
Sbjct: 198 ESYFVLRNETVTSVQREMERQQELELERKARQMLERIFGPGKAVVRVRVFLNFDRRRTST 257

Query: 276 IVYDPDS---KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
             + P      V RS +  ++        P  A     N+P       P      + ++ 
Sbjct: 258 REFVPGPSGRGVPRSDQSLEETYTGPGIPPGGAPGTTTNIPG--YVITPQTAGPSSYERT 315

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
           E  +NYEI T+     +    +E+++ +V+V+                    L  + + V
Sbjct: 316 ETTTNYEITTREQEVVYTPGGVEKITASVLVDGQ-------------LEQQMLNSLRQAV 362

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
           +AA GIN  RGD + + SM F   ++             +       +            
Sbjct: 363 AAAIGINEERGDELYVASMPFSAMEVPAVALAPSRRWLWIILAVLLALLICGG------- 415

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
               L   R+    + A   E  G   L        +                       
Sbjct: 416 VIFFLRKKRKEEKPETAPAREEEGIPSLEELLKRPELLKEKGE----------------- 458

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                          + +L        E  A I++ W   +
Sbjct: 459 -----------LAVLEQQLREYASKKPEEIAAIIKNWLLED 488


>gi|307315211|ref|ZP_07594790.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|331666532|ref|ZP_08367406.1| flagellar M-ring protein FliF [Escherichia coli TA271]
 gi|306905392|gb|EFN35929.1| flagellar M-ring protein FliF [Escherichia coli W]
 gi|315059474|gb|ADT73801.1| Lateral flagellar M-ring protein [Escherichia coli W]
 gi|323181532|gb|EFZ66952.1| flagellar M-ring protein FliF [Escherichia coli 1357]
 gi|323379968|gb|ADX52236.1| flagellar M-ring protein FliF [Escherichia coli KO11]
 gi|331065756|gb|EGI37640.1| flagellar M-ring protein FliF [Escherichia coli TA271]
          Length = 548

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244
            AI HLV+ ++P L    V+V+D  G LLT        +  +      I  +I+      
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPESEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|91795006|ref|YP_564657.1| flagellar MS-ring protein [Shewanella denitrificans OS217]
 gi|91717008|gb|ABE56934.1| flagellar M-ring protein FliF [Shewanella denitrificans OS217]
          Length = 565

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 104/562 (18%), Positives = 218/562 (38%), Gaps = 23/562 (4%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++     Q ++  T     + +++ +++   +   +    +  S  Y  LY   E  + +
Sbjct: 20  SLFSSAAQGWRRFTQGD--KQVMVLALLATVVASVIVIMLWTASQGYRPLYGSQENVETS 77

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L    I +RI  +   + V    +GKAR+ LAA+G+  +   SG +  D  +S G
Sbjct: 78  QVIEVLEAEGIYYRIESHTGLVLVADDQLGKARMLLAARGV-KAKVPSGMDELDS-SSLG 135

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIR 178
            + FM++      LEGE+AR+I S+  + +ARVH+ +P    F +        +  + + 
Sbjct: 136 TSQFMEQAKYRHGLEGELARSIMSLKNVRSARVHLAIPKRSLFIRQTPELPTASVMLQLS 195

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN----EMERNILGKSLSIV 234
                     EA+ +LVA +V  ++   V ++D  G+ L+AN    +       + ++  
Sbjct: 196 PGAELSQSQVEAVVNLVAGSVTGMETSGVKIVDQEGRFLSANINEDQDMTQARDRQITYT 255

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  +  N +  L A LG +NF+  + A++N +  +  +   DP S + +    S D 
Sbjct: 256 RELEQNLMHNASSMLEAILGPNNFQVKIAAKVNFNQIEETKEALDPQSVLVQERTSSDDK 315

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                +  +       N P  +        +     ++E    +++        +   +L
Sbjct: 316 N---AALAQGIPGALSNQPPQAAEGDKKDNT--RNLRQEANRQFDVGRSVRHIRYQQMQL 370

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E +S++V+VN          +      D+ L ++  +V  A G +S RGD+ +I +  F 
Sbjct: 371 ENISVSVLVNNTV-------ATGLTTDDAELTKLGSMVKDAIGFSSERGDSFSINAFAFS 423

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              +     +    ++    +   +I  L+ L   L V    +  L       D +  E 
Sbjct: 424 VPTVAEFEPLPWWQVEDYQAYLRYLIGGLLGLGLILFVLRPLVSHLTFTAKHVDNETREP 483

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
              ++      ++A +            S+ +        L               L  +
Sbjct: 484 ETINLAKSAESTTAESNTTTRAAISQGHSAEKSTAEWLGGLNLPEPGSPLTVQMEHLGML 543

Query: 535 IEINEERFAKILRKWARSEIED 556
                 R A++L  W   +  D
Sbjct: 544 ANQEPARVAEVLAHWIGDKDAD 565


>gi|323171047|gb|EFZ56696.1| flagellar M-ring protein FliF [Escherichia coli LT-68]
          Length = 548

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGY+L DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYDLMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+     
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVAP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|306813320|ref|ZP_07447513.1| flagellar MS-ring protein [Escherichia coli NC101]
 gi|305854083|gb|EFM54522.1| flagellar MS-ring protein [Escherichia coli NC101]
          Length = 548

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
               +   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + + I      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LTYCIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P ++  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|256020214|ref|ZP_05434079.1| flagellar MS-ring protein [Shigella sp. D9]
 gi|332281376|ref|ZP_08393789.1| lateral flagellar M-ring protein [Shigella sp. D9]
 gi|332103728|gb|EGJ07074.1| lateral flagellar M-ring protein [Shigella sp. D9]
          Length = 548

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244
            AI HLV+ ++P L    V+V+D  G LLT        +  +      I  +I+      
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ EL++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPELDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|323191522|gb|EFZ76783.1| flagellar M-ring protein FliF [Escherichia coli RN587/1]
          Length = 548

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 216/555 (38%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++  V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMVGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGLILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 TAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P ++  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPIAANQMSNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+++RGD ++++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLSLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  L +      A       +++
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|149201593|ref|ZP_01878567.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035]
 gi|149144641|gb|EDM32670.1| Flagellar FliF M-ring protein [Roseovarius sp. TM1035]
          Length = 564

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 211/554 (38%), Gaps = 25/554 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                +    R  + A  +L+ + L +AA   +   +   L+  L  ++ +    AL+ A
Sbjct: 28  MDGFIAQPALRRALPAIGVLLVVTLGLAAWLLLAPANRVTLHAGLPEAEKSLALDALTAA 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            +D R+  +  +++V +     AR+ LA QGLP   +  G    D++   G +  ++   
Sbjct: 88  GMDARLDPSSGALTVAADQFHSARMLLATQGLP-EGATDGMSAIDEMP-MGTSRQIESAR 145

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSA 188
             R  E ++AR+IQ +  + AARVH+ +P+  +F +    P ASV +             
Sbjct: 146 LRRMQELDLARSIQELRPVRAARVHLALPERSAFVRDSQPPRASVFLELAPGMALDQAQV 205

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEIEMNIN 246
            AI  LVAAAVP++  G+V+V+D TG LLT+ E +       + +   + ++      + 
Sbjct: 206 RAIVSLVAAAVPDMPRGNVSVVDQTGTLLTSPEEDPVQSEADRQMQHQRRLETLYRDRVL 265

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ-PESA 305
             L   +G  N    V  +++    +I    Y PD+ +      S+    ++    P + 
Sbjct: 266 SLLTPIVGAGNAAVEVTLDMDFTRSEITSEEYLPDTALRSEQSSSQQTSGAQAGGIPGAV 325

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                N   +++      +S           NYE++ +         ++ R+  AV++++
Sbjct: 326 ANTPPNEAQMAEAATQGAKSGTTNSATSSTRNYEVSRRVETRQPQTAQINRVHAAVLLHR 385

Query: 366 --GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGT 423
                    G +         LAEI  +  +A G N+ RGD +T+ S  F+      S  
Sbjct: 386 LPTPAAPAEGEATSAAPEAVPLAEIEALTRSAIGYNAERGDIVTVASAPFVVAPSVISAE 445

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
                        A +      L    L   + L  +R + N      G      +    
Sbjct: 446 --------RWYDAAWLPTLGRTLAQLALFGIIVLGVVRPILNRLLPPVGATATTGMTYGD 497

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
            I              +L +  Q + + + N +    +   ++    L  M      R A
Sbjct: 498 AIEV--------PRGESLSALRQRLETAAPNAEDLNGAITYEEKIDLLRQMAGSETNRIA 549

Query: 544 KILRKWARSEIEDR 557
            + +       EDR
Sbjct: 550 GVFKSMITPTGEDR 563


>gi|114562360|ref|YP_749873.1| flagellar MS-ring protein [Shewanella frigidimarina NCIMB 400]
 gi|114333653|gb|ABI71035.1| flagellar M-ring protein FliF [Shewanella frigidimarina NCIMB 400]
          Length = 558

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 96/558 (17%), Positives = 215/558 (38%), Gaps = 24/558 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +               R +I+   + + + L +    +   P Y  L  K+E +++  + 
Sbjct: 15  ENKSGLLGGVGGADMMRQVIMILALAICLALAVFVMMWAQEPDYRPL-GKMETAEMILVL 73

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  ID++I+ +   + VP     + ++ L+  G+ SS+  + Y   ++ + FG++ 
Sbjct: 74  DVLDKNQIDYQINVD--VVKVPEDKYQEVKLLLSRAGVQSSTQANDY--LNQDSGFGVSQ 129

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPS 183
            M++    ++ E  +AR I+ +  I  A+V + +P    F +  ++P+A+V++       
Sbjct: 130 RMEQARLKQSQEQNLARAIEELKSISRAKVILALPKENVFARNASKPSATVVVNVRRGGL 189

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241
             +  +AI  +V +AV  L+   VTV DS G+LL +   +   +   +   +VQ  + E 
Sbjct: 190 GQEEIDAIVDIVGSAVQGLEPARVTVTDSNGRLLNSGSQDGASSRARREQELVQQQEAEY 249

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              I   L   LG +NF S V   +N    +     + PD    RS  + +     + S 
Sbjct: 250 RKKIESILMPILGPENFTSQVDVNMNFTAVEQTAKRFSPDLPAIRSEMIIERNSSGQNS- 308

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENT-----DKKEEQSNYEINTKSIATTHDNYKLER 356
                    N P +      +      +       KE   NYE++T    T      + R
Sbjct: 309 -GGIPGALSNQPPMESDIPQVAGEATASTMSGDSSKEATRNYELDTTISHTRQQIGVVRR 367

Query: 357 LSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           +S++V +N      +  G  A   + +  L  I +++  A G +++RGD + + ++ F++
Sbjct: 368 VSVSVAINFKPGQVDENGVVARVPRTEQELTNIRRLLEGAVGFSTQRGDALEVVTVPFMD 427

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +       +         F   I   +  +  L++    +  + +     +     + 
Sbjct: 428 QLIEALPEPDMWEEP----WFWRAIKLALGAIVILVLILAVVRPMLKKLTNPN----GIN 479

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               + P    + +      +    L++   +            N +        +  ++
Sbjct: 480 MPDDIRPGHELAEIEDQYAADTLGMLNTKEAEYSYADDGSIQIPNLHKDDDMIKAIRALV 539

Query: 536 EINEERFAKILRKWARSE 553
               E   ++++ W +  
Sbjct: 540 ANEPELSTQVIKNWLQDN 557


>gi|284989556|ref|YP_003408110.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160]
 gi|284062801|gb|ADB73739.1| flagellar M-ring protein FliF [Geodermatophilus obscurus DSM 43160]
          Length = 527

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 219/555 (39%), Gaps = 39/555 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+   + +   +  ++   + +++  +    ++       ++ +P Y  L+  L  +D +
Sbjct: 4   ALAGPVERIRSALATISLGQKVVIGLLTAGLLLGGFFFYRWITAPTYAPLFSNLASTDAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+ A   + ++D G +I VP+  V   R+ ++ +GLP + +++GY L D+     
Sbjct: 64  AIVDELNAAGAAYELADGGGTIMVPNEQVYDLRLSMSGKGLP-AGNDTGYALLDE-QGIT 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + F Q++T  RAL+ E+ART++S+ G+  A VH+ +P+   F    A PTASV++    
Sbjct: 122 TSEFQQQVTYQRALQDELARTLESLEGVRTAVVHLALPEEEVFASDEAEPTASVLLDLAP 181

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAI 237
                    +A+ +LV++++  +D   VTV D+TG +L+A               + Q  
Sbjct: 182 GTGLDSGQVQAVTNLVSSSIEGMDPEQVTVADATGAVLSAPGQGVTSAAGDARSQLEQDY 241

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +  N    L   LG    + +V A++++D +      +  +         +   + +
Sbjct: 242 EARLASNAQAVLDPILGPGRAKVSVRADVDLDQRSTTSETHTYEEGTPPISESTTTEEYT 301

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   +   +N                  +K+   +N  + T          ++ RL
Sbjct: 302 GNGAAVGGILGPENQADA-----GGGTGDSAYNKESTTANNAVGTTVETVEGAPGRINRL 356

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +++VV+++     +              A+I  +V  A G++  RGD IT+ SM F    
Sbjct: 357 TVSVVMDEAVAGNLN------------QAQIQALVGNAIGLDVARGDDITVASMAFDTTA 404

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +     +  +   +     +     +   +LV +L     R     +D +  E+   
Sbjct: 405 ADRAAEELAAAEEAERQAQLWSMVKTGGIALLVLVVWLRSRRGREDEEDEDYEALELADD 464

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            +     I    T  +   DN AL+                + +    +    +  M+  
Sbjct: 465 VMAELDRIRIESTRAVPVVDNAALE----------------MEAAERARVRGEIATMVSE 508

Query: 538 NEERFAKILRKWARS 552
             +  A +LR W   
Sbjct: 509 KPDEVAAMLRGWLSE 523


>gi|188997543|ref|YP_001931794.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932610|gb|ACD67240.1| flagellar M-ring protein FliF [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 536

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 112/520 (21%), Positives = 218/520 (41%), Gaps = 41/520 (7%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGL 102
           ++   Y  LY  L   D   I  ALS+ NI +++  NG+ I VP   V  AR+ LAA+GL
Sbjct: 46  LHKEDYAVLYSGLAPDDAGNILTALSQENIPYKLEGNGTIIMVPKDKVYDARLKLAAKGL 105

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P S    G+E+F +    G T F + +  +RA+EGE+ RTI+ +  ++ A+V+I +P   
Sbjct: 106 P-SGKVVGFEIF-EEPKLGTTQFQENVNYIRAVEGELTRTIKQLDAVMDAKVNIALPKDS 163

Query: 163 SFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
            F +      ASV+I+         +  +AI  LV+ AVPNL   +VTV+D+ G++L+  
Sbjct: 164 IFVRQEDEAKASVIIKLWPDKDLTKEQIKAIVFLVSRAVPNLKPENVTVVDNRGRVLSDL 223

Query: 221 EMERNIL---GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
             E +      K++ + + ++ ++E +I   LA  +G +        EL       ++ +
Sbjct: 224 IDEESANESGDKTVDLKRKLERQLEKDIQSMLAKVVGPERVVVKASVELETGKVHQKDEI 283

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           YDPD     S R  K+++  E+    +      N+P V +  V      +     +  +N
Sbjct: 284 YDPDKVAVVSERKIKESETEESQTINAPPGTPTNVPPVMNTPVMGGGGKKKEK-SDITTN 342

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR----SADQGKIDSYLAEINKIVS 393
           Y+++   I T    + ++++S+ V+++                 + +    L     ++ 
Sbjct: 343 YDVSKSMIETQKPLFTIKKVSVGVMIDGKYKEIKDKDGNIIKQFEPRSQQELQSYENLIK 402

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
           +A G +  RGD +T+ S+ F         + +                          + 
Sbjct: 403 SAIGFDPNRGDQVTVISVPFEATSTQEEVSTKQQN-----------------------LI 439

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
              +  +  L  +       +  K       I++   +  +         + + +     
Sbjct: 440 MYVIAGILLLLILGLLAFIFIKKKKQKKEEIITATTLSAPLAG------VAAEALAKKYE 493

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +S ++        L++L + E N +  A I+ KW + +
Sbjct: 494 EEKSLVSEIEKLPEYLKILEIAEENPQMIANIITKWIKED 533


>gi|119775432|ref|YP_928172.1| flagellar MS-ring protein [Shewanella amazonensis SB2B]
 gi|119767932|gb|ABM00503.1| flagellar M-ring protein FliF [Shewanella amazonensis SB2B]
          Length = 565

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/560 (15%), Positives = 209/560 (37%), Gaps = 24/560 (4%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +       +  S    R + +   + + + L +    +   P Y  L  K E  ++ ++ 
Sbjct: 19  ENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEPEYRPL-GKFEAQEMIQVL 77

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I +++  +   + VP       R+ L+  G+  ++S +  +   +   FG++ 
Sbjct: 78  DVLDKNKIPYQVDFD--VLRVPEDKYQDIRLLLSRNGV-DAASTTNQDFLSQDMGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-AINPS 183
            +++     + E  +ARTI+ +  +  A+V + +P    F +  ++ +A+V++       
Sbjct: 135 RLEQARLKHSQEQNLARTIEELKSVSRAKVILALPKENVFARNQSKASATVVVTSRRGGL 194

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEI 241
             +  +AI  +VA+AV  L+   VTV DS G+LL +   +       + L +V+  + E 
Sbjct: 195 GQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARARRELELVKQKEAEY 254

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
              ++  L   LG +N+ S V   ++    +     ++PD    RS    +     E + 
Sbjct: 255 RAKVDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRSEMTLETQTSGEANM 314

Query: 302 PESAVTVEQNMPHVSDRKVPL------PRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                    N P +                      +E   NYE++T    T      + 
Sbjct: 315 --GIPGALSNQPPMESNIPQTLQEAQDKAQANGNSHREATRNYELDTTISHTRQQIGVVR 372

Query: 356 RLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           R+S++V V+         G+     + ++ LA I +++  A G + +RGD+I + ++ F+
Sbjct: 373 RVSVSVAVDYKTGEANTEGQVNRVARTEAELANIRRLLEGAVGFSGQRGDSIEVVTVPFM 432

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           +  +     + +         F   +      +  L++    +               +V
Sbjct: 433 DQLVEEVPELPMWEQP----WFWKAMKLASGSLAILVLILFVVRP----LLKKLLLTDKV 484

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                       + +      +    L++S+ +            N +        +  +
Sbjct: 485 DMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKAIRAL 544

Query: 535 IEINEERFAKILRKWARSEI 554
           +    E   ++++ W + + 
Sbjct: 545 VANEPELSTQVVKNWLQQDN 564


>gi|218703511|ref|YP_002411030.1| flagellar MS-ring protein [Escherichia coli UMN026]
 gi|293403341|ref|ZP_06647432.1| predicted protein [Escherichia coli FVEC1412]
 gi|298378953|ref|ZP_06988834.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302]
 gi|300898054|ref|ZP_07116423.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
 gi|218430608|emb|CAR11474.1| Lateral flagellar M-ring protein (FliF-like) [Escherichia coli
           UMN026]
 gi|291429194|gb|EFF02214.1| predicted protein [Escherichia coli FVEC1412]
 gi|298280066|gb|EFI21570.1| flagellar M-ring protein FliF [Escherichia coli FVEC1302]
 gi|300358232|gb|EFJ74102.1| flagellar M-ring protein FliF [Escherichia coli MS 198-1]
          Length = 548

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEDALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIMHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+ +RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDVQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|332162913|ref|YP_004299490.1| flagellar M-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667143|gb|ADZ43787.1| Flagellar M-ring protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 541

 Score =  296 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 112/559 (20%), Positives = 231/559 (41%), Gaps = 32/559 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q   +   LG+ +  IL     + +   +    + +S  Y  L+   E   V +
Sbjct: 1   MLDKIKQQLPAIR-LGKNQKSILMGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   I V  + +G+ARI LAA+G+ +++  +GYEL D+    G 
Sbjct: 60  VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179
           + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF    +  +  +  + ++ 
Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTSVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                     AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLKADQVGAIVQLVAGSIPGMKAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E +I   L++ +G +N+R +V  +L++   +     Y       R    +   +
Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRVEETLERY---GAEPRVSDENIQQE 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                          N P    +    P ++    + + Q  Y  +       H  +KLE
Sbjct: 296 NGNEDMAMGIPGSLSNQPAAQPKNANAPAAM---SRSQAQRKYAYDRDIRHVRHPGFKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AV++NK          A +      L E+ +++  A GI+++RGD++T+  + F  
Sbjct: 353 KMTVAVILNKSA-------PALEKWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R     +      + +LL    G+  L    +  D K   + 
Sbjct: 406 PTLIDEPVIAWWQDATTFRW----VEIAGIGLLSLLFLLFGVRPLMARLSRRDDKHSALA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
               +    +++  +      ++ A         S   +          +     L  + 
Sbjct: 462 MAENIDGLNVTNTTS------ESSATTEPMLPGSSFKEDDNLPPQGSGLEIKISHLQQLA 515

Query: 536 EINEERFAKILRKWARSEI 554
           +   ER A+++++W  +  
Sbjct: 516 QSETERVAEVIKQWINNNE 534


>gi|283834471|ref|ZP_06354212.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
 gi|291070018|gb|EFE08127.1| flagellar M-ring protein FliF [Citrobacter youngae ATCC 29220]
          Length = 560

 Score =  296 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 117/574 (20%), Positives = 230/574 (40%), Gaps = 39/574 (6%)

Query: 1   MA-ILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M  ++ ++ QF  S +  L   + L L +   V     + +  +  +  Y +LY   E  
Sbjct: 1   MNELIKKVTQFLPSFSFRLDGNKRLALLAAAAVAATAIIVSVLWNGNHGYVSLYGSQENL 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
            V++I   L    +++RI      I VP   + K R+ LAA+G+  +   SGYEL DK  
Sbjct: 61  PVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAMLPSGYELMDKDE 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASV 175
             G + F+Q I   R+LEGE+A++I ++  + +ARVH+ + +  SF          +  V
Sbjct: 120 VLGASQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSFVVSDEPQNSASVVV 179

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSL 231
            +   +        AI HLV+ +VP+L    V+V+D  G LL+      E       K  
Sbjct: 180 RLHYGSKLDLDQVNAIVHLVSGSVPDLKASLVSVVDQAGNLLSDGIGAGEAVSAATRKRD 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            I++ IQ +   ++   L + +G  N+R +V+ +L++      +  Y       +  R  
Sbjct: 240 QILKDIQDKTRASLANVLDSLVGTGNYRVSVMPDLDLSNIDETQEHY---GDTPKVNREE 296

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-----------TDKKEEQSNYEI 340
                              N P ++  +V    +              +   E + +Y  
Sbjct: 297 TVLDSDTNQIAMGIPGSLSNRPPLAANQVANGTAAGTAPEESRQPAALSKHSENKRDYSW 356

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +       H  + ++RL++AVV+N+          A +        ++  +++ A GI++
Sbjct: 357 DRSVEHIQHPGFDIKRLNVAVVLNQSA-------PALKNWKPEQTTQLTALLNNAAGIDA 409

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +RGD ++++ ++F+   +     V +   D +       +  +   +  LL+    +  L
Sbjct: 410 KRGDNLSLSLLNFVPQSVPVEPVVPLWKDDSILAW----VRLIGCGLLALLLLLFVVRPL 465

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
            +    +  +          +P  I +  T      D       N ++ S   +      
Sbjct: 466 MKRLTAERRRTPTPELALDAAPIAIPADKTHFAAAEDE----RKNIELPSFPGDDSLPSQ 521

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           S   +     L  +   + +R A++LR+W  S  
Sbjct: 522 SSGLEVKLEFLQKLAMSDTDRVAEVLRQWITSNE 555


>gi|42524763|ref|NP_970143.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100]
 gi|39576973|emb|CAE78202.1| flagellar M-ring protein [Bdellovibrio bacteriovorus HD100]
          Length = 549

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 225/552 (40%), Gaps = 24/552 (4%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           ++QF +   +LG T+ L + +V ++  +      F  +   Y  L+  +    V+ I   
Sbjct: 9   VVQFREFFKNLGPTKRLSVIAVTVIAAVALFTMLFMASGKDYVPLFTNIPTEQVSTIVGK 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSF 125
           L+E N+ F++ D G +I++P  ++   ++ L ++ G P   S  G E+FDK + FG+ S+
Sbjct: 69  LNEKNVPFQLRDGGKTIAIPKELLHSTQMTLMSEIGSPKMGS-IGLEIFDKQD-FGMNSY 126

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPS 183
            Q+I   RAL+GE+ R I +++ +  ++V + +P+  +F + G + +ASV++        
Sbjct: 127 AQKINYQRALQGELMRAINTLTAVKQSKVILALPNKKTFLEEGGQASASVVVELHQGKEL 186

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LSIVQAIQHEIE 242
             +    +R+LVA +V  +D   VTVLD  GK+LT             L +   I+ ++E
Sbjct: 187 TPEQVRGVRYLVANSVEGMDADKVTVLDERGKVLTRVADGTTGGSNELLDLKAKIEGDLE 246

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             I   L   +G     + V A LN       E   DPD    RS +  +++     + P
Sbjct: 247 DRIEDILTKVVGHAKVVAKVDATLNHRVISSVEESVDPDKTAIRSQQSEEESLDGSRTNP 306

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                   N+P   D+     R      K+ + +NY++             LER+S+AVV
Sbjct: 307 AGVPGSRSNLPGAEDQGTVGFRQDVK--KEIKTTNYDVPKTVRNIRESAGNLERVSVAVV 364

Query: 363 VNKGR----LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
           V+         +    +  + +    L +   +V  A G N+ RGD++ I ++ F     
Sbjct: 365 VDGMMTTTTKADGTTETTWKPRSAEELRKYEDLVKNAIGFNTARGDSVKIENIQFQPEDF 424

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
             +  +  +      +    +    +      L  F+ +    +          E     
Sbjct: 425 SEAEKILTTLER--KKLIHALFKWALLGFSLALFFFIVVRPFMQWITDSFQDSVEEMLPR 482

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
            +       +V    +P  + AL    + I                +    R+L  +  +
Sbjct: 483 TIEELEELQSVD-NTLPGMSTALPVLQESIDPEKAES---------ELLKDRILSSMSRD 532

Query: 539 EERFAKILRKWA 550
           EE+ A     W 
Sbjct: 533 EEKAANAFGMWL 544


>gi|22127339|ref|NP_670762.1| flagellar MS-ring protein [Yersinia pestis KIM 10]
 gi|45442785|ref|NP_994324.1| flagellar MS-ring protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809069|ref|YP_652985.1| flagellar MS-ring protein [Yersinia pestis Antiqua]
 gi|108810737|ref|YP_646504.1| flagellar MS-ring protein [Yersinia pestis Nepal516]
 gi|145597806|ref|YP_001161882.1| flagellar MS-ring protein [Yersinia pestis Pestoides F]
 gi|150260260|ref|ZP_01916988.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|162418149|ref|YP_001604857.1| flagellar MS-ring protein [Yersinia pestis Angola]
 gi|165924858|ref|ZP_02220690.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939096|ref|ZP_02227648.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009035|ref|ZP_02229933.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211925|ref|ZP_02237960.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398942|ref|ZP_02304466.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419368|ref|ZP_02311121.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425084|ref|ZP_02316837.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167466352|ref|ZP_02331056.1| flagellar M-ring protein FliF [Yersinia pestis FV-1]
 gi|170022960|ref|YP_001719465.1| flagellar MS-ring protein [Yersinia pseudotuberculosis YPIII]
 gi|218927901|ref|YP_002345776.1| flagellar MS-ring protein [Yersinia pestis CO92]
 gi|229837397|ref|ZP_04457560.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229840610|ref|ZP_04460769.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842839|ref|ZP_04462991.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900934|ref|ZP_04516058.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516]
 gi|270487684|ref|ZP_06204758.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294502778|ref|YP_003566840.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|21960421|gb|AAM87013.1|AE013949_7 putative flagellar M ring protein [Yersinia pestis KIM 10]
 gi|45437651|gb|AAS63201.1| putative flagellar M-ring protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108774385|gb|ABG16904.1| flagellar M-ring protein [Yersinia pestis Nepal516]
 gi|108780982|gb|ABG15040.1| putative flagellar M-ring protein [Yersinia pestis Antiqua]
 gi|115346512|emb|CAL19388.1| putative flagellar M-ring protein [Yersinia pestis CO92]
 gi|145209502|gb|ABP38909.1| flagellar M-ring protein [Yersinia pestis Pestoides F]
 gi|149289668|gb|EDM39745.1| lateral flagellar M-ring protein [Yersinia pestis CA88-4125]
 gi|162350964|gb|ABX84912.1| flagellar M-ring protein FliF [Yersinia pestis Angola]
 gi|165913052|gb|EDR31677.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923058|gb|EDR40209.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992374|gb|EDR44675.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206671|gb|EDR51151.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963362|gb|EDR59383.1| flagellar M-ring protein FliF [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051446|gb|EDR62854.1| flagellar M-ring protein FliF [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055847|gb|EDR65628.1| flagellar M-ring protein FliF [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749494|gb|ACA67012.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis YPIII]
 gi|229682273|gb|EEO78365.1| Flagellar M-ring protein fliF [Yersinia pestis Nepal516]
 gi|229690106|gb|EEO82163.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696976|gb|EEO87023.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705520|gb|EEO91530.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|262360810|gb|ACY57531.1| flagellar M-ring protein [Yersinia pestis D106004]
 gi|262364755|gb|ACY61312.1| flagellar M-ring protein [Yersinia pestis D182038]
 gi|270336188|gb|EFA46965.1| flagellar M-ring protein FliF [Yersinia pestis KIM D27]
 gi|294353237|gb|ADE63578.1| flagellar M-ring protein [Yersinia pestis Z176003]
 gi|320016722|gb|ADW00294.1| Flagellar M-ring protein fliF [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 546

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/559 (22%), Positives = 231/559 (41%), Gaps = 27/559 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q       LG     IL S + + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKLSP-GQLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA-- 179
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD ++      +   +
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDPRIND---ENIQQE 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P    +    P ++    + + Q  Y  +       +  YKLE
Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+ L+      F     ++R             
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVL---WFGVRPLMKRYSRKGSENLPLAI 462

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +                 +     ++ +      S +L  + +   +K     L  + 
Sbjct: 463 SSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETK--IAHLQQLA 520

Query: 536 EINEERFAKILRKWARSEI 554
           +   ER A+++++W  S  
Sbjct: 521 QSETERTAEVIKQWINSNE 539


>gi|167630289|ref|YP_001680788.1| flagellar m-ring protein flif, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593029|gb|ABZ84777.1| flagellar m-ring protein flif, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 511

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/552 (21%), Positives = 198/552 (35%), Gaps = 55/552 (9%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
              L R + LIL   ++  I+   A  +    P Y  L+  L+ +D   I   L E  +D
Sbjct: 1   MGRLSRQQKLILGGSLVAIIVSLAAFVYLAGRPDYVPLFQNLDPADAGAIQAKLKEQKVD 60

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           F++S++G +I VPS      RI LA  GLP   +  G+E F   + FG T   +EI    
Sbjct: 61  FQVSEDGKTILVPSKDQASLRIELANSGLPK-GTGWGFETF-NESRFGETEKEKEIRLKI 118

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAI 191
           A E E++RT+Q+I G+  ARV IV      F+      TASVM+     +  +      I
Sbjct: 119 ATETELSRTLQNIPGVENARVMIVPATDSLFKGNATDATASVMLILKPYATLEEKQIRGI 178

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK---------SLSIVQAIQHEIE 242
            HLV+ +V  L   +VTV+D+TG +L+          K          L + +  +  +E
Sbjct: 179 IHLVSRSVKQLKPENVTVVDNTGNVLSEGLFTAGGSDKVNLDGLAKAQLQMKKDFEASLE 238

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
                 L   LG  N    V  EL+   Q+++++           +   +  +  + S  
Sbjct: 239 QKAQDMLNRALGAGNAVVKVSTELDFSQQEVKDVKL----GKPVPLSTRETEEAGQGSTG 294

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY-KLERLSIAV 361
                   N+P           +  +  K +   N EI      T       L+RLS++V
Sbjct: 295 SGTPGTSANIPTQQA----TNNNTSSYSKTDSIVNNEIPKTETHTVTPPGSSLKRLSVSV 350

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
           +VN+    E    +    K  +    I   +         R + I++  M F  + +   
Sbjct: 351 MVNRTLTPEE---TQQLEKAVAQAVGIRYPIQPPAAGQPDRVEQISVLGMAFDRSAVDEM 407

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                  M    + F   +     L+   L+   GL+A R       A   E        
Sbjct: 408 N-----RMAEEQKAFQRYLMIGGALIALALLVMAGLYARRAYLRRKPAPAPEPLPSPAFD 462

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               +  V                                        ++  + E N E 
Sbjct: 463 TSVPTPPVPELSPEEMEKLA-------------------------LREKIEELSETNPEA 497

Query: 542 FAKILRKWARSE 553
            A++L+ W   E
Sbjct: 498 VARLLKTWLVDE 509


>gi|258621104|ref|ZP_05716138.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|258626177|ref|ZP_05721025.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|262170880|ref|ZP_06038558.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
 gi|258581532|gb|EEW06433.1| flagellar M-ring protein [Vibrio mimicus VM603]
 gi|258586492|gb|EEW11207.1| flagellar M-ring protein [Vibrio mimicus VM573]
 gi|261891956|gb|EEY37942.1| flagellar M-ring protein FliF [Vibrio mimicus MB-451]
          Length = 579

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/563 (18%), Positives = 216/563 (38%), Gaps = 30/563 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++  +   +   L   R ++L   I + + L +   F+V  P    L    E  ++ 
Sbjct: 34  DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 92

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG
Sbjct: 93  PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFG 149

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RA 179
           ++  +++     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +  R 
Sbjct: 150 VSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRT 209

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                 +  +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q 
Sbjct: 210 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 269

Query: 240 E--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           E  +   I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 270 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 329

Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +          N P                    + +  KE   N+E++T        
Sbjct: 330 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQGSVHKEATRNFELDTTISHERKQ 387

Query: 351 NYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +  + R ++AV V  +  +    G        ++ L  I +I+    G +  RGD + + 
Sbjct: 388 SGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEADLNSIRQILIGTVGYSENRGDLLNVL 447

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           SM F E ++     V +      +     + +ALV ++  L+   L   A+++L N    
Sbjct: 448 SMPFAEPEVEQIADVPIWEHPNFNDWIRWLASALVIIIVVLV---LVRPAMKKLINPAAD 504

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              ++ G   +           G   +     +  +              N +  +    
Sbjct: 505 SDDQMYGPDGMPIGADGETSLIGSDIDSGELFEFGSGIDLP---------NLHKDEDVLK 555

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            +  ++    E  A++++ W ++
Sbjct: 556 AVRALVANEPELAAQVVKNWMQN 578


>gi|84514816|ref|ZP_01002179.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53]
 gi|84510975|gb|EAQ07429.1| Flagellar FliF M-ring protein [Loktanella vestfoldensis SKA53]
          Length = 616

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 216/592 (36%), Gaps = 53/592 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            ++       +         + ++L +     + +P    L+  L  ++   +  AL   
Sbjct: 28  LRTFYMQPAVQRAFPVIAAALLVVLGLILYLILQAPQRTTLFAALPEAEKAAVMDALRNN 87

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
             D +I      I+VP+     +R+ LAAQGLP S    GY +       G +  ++ + 
Sbjct: 88  GTDVQIDPVTGDITVPTGEFYNSRMSLAAQGLPQS-MPDGYSVL-TDMPMGTSRSVESMR 145

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVYKSA 188
             ++ E E+AR+I  I  + A+RVH+ +P+  +F +    PTASV ++         +  
Sbjct: 146 LKQSQEVELARSINEIDVVSASRVHLAIPERSAFARNAQNPTASVFVQVMPGRSLSEQQV 205

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNIN 246
            AI +LV+++V NL    VTV++  G+LL+   N+   ++  + L     +++     I 
Sbjct: 206 MAIVNLVSSSVANLPKTSVTVVNQNGQLLSDTVNDPATDLADRQLEYQLRLENIYRTRIE 265

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +G  N  + V  +++    +  E +  PD     S +++ + + +E SQ     
Sbjct: 266 SLLTPIVGPGNVSAQVSLDIDFTRTERTEDMVIPDQSALLSEQVAVEEEVAEASQ--GIP 323

Query: 307 TVEQNMPHVSD-----------------------------------RKVPLPRSLENTDK 331
               N P                                        +   P        
Sbjct: 324 GTVGNTPPPRPELEQPAGAADGQAPAEAGATAEAGANTVAEIYAPVDRNTGPGQPRLRSS 383

Query: 332 KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK--GRLTEVLGRSADQG---KIDSYLA 386
                NYE++    +      ++  + +AV++ +         G +          S L 
Sbjct: 384 DSTMRNYEVSRTVTSENSPMTRINGVHVAVLLRETLPVAPTEDGDAVAAPAIGLDPSRLD 443

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
           E+  +VS   GI+  RGDT+ ++S+ F+  +   S        +++      +   +   
Sbjct: 444 EVKSLVSRTVGIDESRGDTLIVSSLPFISPEAVISSL--SGSTELVWHEDPWIREMMRNA 501

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS--AVTTGLMPNDNIALDSS 504
           +  +++  + L  ++ L     A  GE GG   +          +    M       +  
Sbjct: 502 LMVIVLAVVTLGLIKPLLTQFLASSGESGGYGNVITTEDGEIIDMDVIEMEEGQTLEEIK 561

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEERFAKILRKWARSEIE 555
            +     S      +++  S    +  +  ++     R + + +     +++
Sbjct: 562 AKLKPKKSTISAEMLDTANSYDDKVALIRMIVADEAGRVSNVFKALMEDDLD 613


>gi|84388111|ref|ZP_00991007.1| flagellar M-ring protein [Vibrio splendidus 12B01]
 gi|84377178|gb|EAP94048.1| flagellar M-ring protein [Vibrio splendidus 12B01]
          Length = 580

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 96/557 (17%), Positives = 207/557 (37%), Gaps = 30/557 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 41  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  ++
Sbjct: 100 DLQKIEYTL--EGNTISVPASEYNSLKLNMVRAGL-NQERNAGDDILMQDMGFGVSQRVE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K 
Sbjct: 157 QERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243
              +++  +VA+AVP +    +TV D  G+LL +   +     +       +  +  +  
Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLNSGSQDPMSAARRKEHELERNQEQALRE 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +L+    +     +DP++   RS    +D     T    
Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNGNTV--A 334

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                  + + +  KE   N+E++T        +  + R
Sbjct: 335 GIPGALSNQPPADASIPQDVAQMKDGSMTGQGSVHKEATRNFELDTTISHERKQSGTVNR 394

Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V + ++  L    G         S +  I +++    G +  RGD + + SM F  
Sbjct: 395 QTVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAP 454

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                   V +      +       +ALV +V  L+   L   A+++L N       ++ 
Sbjct: 455 QVTDIVADVPIWEHPNFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAADDDDQMY 511

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   +           G                     +     N +  +     +  ++
Sbjct: 512 GPDGMPIGADGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562

Query: 536 EINEERFAKILRKWARS 552
               E  A++++ W   
Sbjct: 563 ANEPELAAQVVKNWMVD 579


>gi|157376198|ref|YP_001474798.1| flagellar MS-ring protein [Shewanella sediminis HAW-EB3]
 gi|157318572|gb|ABV37670.1| flagellar M-ring protein FliF [Shewanella sediminis HAW-EB3]
          Length = 569

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 92/551 (16%), Positives = 212/551 (38%), Gaps = 28/551 (5%)

Query: 18  GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
              R + +   + + + L +    +   P Y  L  K+   ++ ++   L +  I + I 
Sbjct: 34  DMLRQVTMILALAICLALAVFVMLWAQEPEYRPL-GKMSTQEMIQVLDVLDKNKIKYEID 92

Query: 78  DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEG 137
            +   + VP       ++ L  +G+ S++S+S Y    + + FG++  M++     + E 
Sbjct: 93  VD--VVKVPEDKYQDVKLMLTREGVDSAASSSDY--LSQDSGFGVSQRMEQARLKHSQEL 148

Query: 138 EIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKSAEAIRHLVA 196
            +AR I+ +  +  A+V + +P    F +  ++P+A+V+I A       +  ++I  +VA
Sbjct: 149 NLARAIEELRNVTRAKVILAIPKENVFARNRSKPSATVVINARRGSLGQEEVDSIVDIVA 208

Query: 197 AAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLG 254
           +AV  L+   VTV DS G+LL +   +       +   +VQ  + E    +   L   LG
Sbjct: 209 SAVQGLEPTRVTVTDSNGRLLNSGSQDAVSARARREQELVQQKESEYRNKVESILMPILG 268

Query: 255 VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314
            +NF S V   ++  + +     Y+PD    RS    +    S  +          N P 
Sbjct: 269 PENFTSQVDVSMDFTSVEQTAKRYNPDLPALRSEMTVE--NNSNGATTGGIPGALSNQPP 326

Query: 315 VSDRKVPLPRSLENTDK---------KEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           +         + +   +         +E   N+E++T    T      + R+S++V V+ 
Sbjct: 327 MEANIPQEALNNQADAESNSSSGSSHREATRNFELDTTISHTRQQIGVVRRVSVSVAVDF 386

Query: 366 GR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                   G+ +   + +  L+ I +++  A G  ++RGD I + ++ F++  + +    
Sbjct: 387 KSGSAGEDGQVSRVPRTEQELSNIRRLLEGAVGFTTQRGDIIEVVTVPFMDQLIEDVPAP 446

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
           ++         F   I   +  +  L++    +  + +     D+    V          
Sbjct: 447 ELWEQP----WFWRAIKLALGGIVILVLILAVVRPMLKRLIYPDS----VKLPDEPRFGD 498

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
             + +      +    L+    +            + +        +  ++    E   +
Sbjct: 499 ELAEIEDQYASDTLGMLNRPEAEYSYADDGSILIPDLHKDDDMIKAIRALVANEPELSTQ 558

Query: 545 ILRKWARSEIE 555
           +++ W +   +
Sbjct: 559 VVKGWLQDNEQ 569


>gi|226950075|ref|YP_002805166.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto]
 gi|226842546|gb|ACO85212.1| flagellar M-ring protein fliF [Clostridium botulinum A2 str. Kyoto]
          Length = 526

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +N ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D    D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|188492056|ref|ZP_02999326.1| flagellar M-ring protein FliF [Escherichia coli 53638]
 gi|188487255|gb|EDU62358.1| flagellar M-ring protein FliF [Escherichia coli 53638]
          Length = 548

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 113/555 (20%), Positives = 218/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  + ++  Y + Y + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTSNRGYVSFYGRQENLPVSQIVSVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LTYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDVPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQDA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMQEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|170755222|ref|YP_001782279.1| flagellar MS-ring protein [Clostridium botulinum B1 str. Okra]
 gi|169120434|gb|ACA44270.1| flagellar M-ring protein FliF [Clostridium botulinum B1 str. Okra]
          Length = 526

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +N ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNNDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D    D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|134300247|ref|YP_001113743.1| flagellar MS-ring protein [Desulfotomaculum reducens MI-1]
 gi|134052947|gb|ABO50918.1| flagellar M-ring protein FliF [Desulfotomaculum reducens MI-1]
          Length = 521

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/564 (20%), Positives = 216/564 (38%), Gaps = 55/564 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   D L +  +      + R +++  V  V +   +     +  P+Y  L   LE  D 
Sbjct: 1   MNFNDLLERLKQRWQETSQNRKVLVILVSTVVLAGLVYLAMTLTKPNYAILLGDLEPKDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L    I +++ D G++I VP   V + R+ LA+ GL  +   +G+ELFDK + F
Sbjct: 61  GDIVAQLESEKIPYQLIDQGTTILVPQEQVDEIRVKLASDGL-LTGVGNGFELFDK-SKF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T F Q+I+  RAL+ E+ RTI  + G+  ARVH+V+P    F +     +ASV+++  
Sbjct: 119 GETDFEQQISYQRALQEELRRTITKVEGVEQARVHLVLPRKSVFIEEEGTASASVVVKLK 178

Query: 181 NP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---------- 228
                  +  + +  L+  +V  L   +V ++D+ G +L     + +             
Sbjct: 179 PRAKLKAEQVKGLNDLIIGSVEGLQAENVHIIDTEGNVLNDFLKDSSGTPGNGFSGTILE 238

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           +   I +  + E+E  +   LA  LG +   + V AE++ +  Q       P   V    
Sbjct: 239 RQQQIRRTYEKELENRVQNMLAKVLGPNKAVAMVTAEMDFNQLQTNTTEVVPGQVVSERS 298

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
              + +  S                           S  +  K ++  NY+  T++ +  
Sbjct: 299 IKEQGSDGSGGGVTG-----STTQMPGQSIPAETSTSQNSYIKTDDTKNYQHGTRTQSEV 353

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               KL +LS AVV+++                     ++ KIV+AA G + +RGD IT+
Sbjct: 354 QAPGKLIKLSTAVVLDESVKNLD-------------RTQVEKIVTAAIGFDDQRGDQITV 400

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
           ++M F  +Q      +  +        + T+   +  L+  LL+    L   R+      
Sbjct: 401 SAMTFDRSQYDLDQDLPDNSQKEKELFYMTIAAVVGGLLLLLLLVAYWLRRRRK------ 454

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                            ++     ++         S           +++      K   
Sbjct: 455 -----------------NAEQELQVIEETTPMPIESVTTKEEEEEEEEAQWEIPPPKDKQ 497

Query: 529 LRLLHMIEINEERFAKILRKWARS 552
            +L  + +   +  A +L+ W R 
Sbjct: 498 KQLKELAQERPDDIASVLKVWLRE 521


>gi|170760264|ref|YP_001787983.1| flagellar MS-ring protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407253|gb|ACA55664.1| flagellar M-ring protein FliF [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 526

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L +  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLESVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI++ 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTISVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D    D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|269792946|ref|YP_003317850.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100581|gb|ACZ19568.1| flagellar M-ring protein FliF [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 524

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 120/568 (21%), Positives = 204/568 (35%), Gaps = 60/568 (10%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +QL +       L R +   L     + +   +   F      YD L+  L + D
Sbjct: 1   MDRLKEQLERLKGFFLGLERWQRYSLVGAGALVLASLVLLAFVAGRTAYDPLFSGLTMED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L E  I F++    ++I VP   V +ARI LA  G+P      G+E+FD+   
Sbjct: 61  QGAVVEYLKEQKIPFKVDPGANAILVPRRNVYEARIALAQMGIPKGGV-VGFEIFDQ-PK 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G+  F Q +   RALEGE++RTI  I  +  ARV IV+P+   F +     TASV++R 
Sbjct: 119 MGMNDFQQRVAYARALEGELSRTISKIDAVEEARVSIVIPEQRLFLEEQRPSTASVLVRL 178

Query: 180 INPSV--YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----------NEMERNI 226
                   +    I +LVA +V  L   DVTV+D++GK+L+                R +
Sbjct: 179 KPGREIGQEQVRGIVNLVARSVEGLRPEDVTVVDTSGKVLSDLIHDDNLIYMSGSDGRAV 238

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
                 + +  + E+E  +   L    G       V  EL+ D +      + P    + 
Sbjct: 239 SSVQRELERQQEQELERKVRVMLEKVFGPGKAVVRVRVELDFDKKSTSRREFIPGPDGKG 298

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSI 345
            IR  ++ + S T              ++      P        +K +  +NY+I T+  
Sbjct: 299 VIRSQQNVEESYTGPGTPPGGAPGTTTNIPGYVVNPNQGGNVEYNKTDTVTNYDITTQES 358

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            T      ++RLS +V+V+                 ++    + + V+AA GI+  RGD 
Sbjct: 359 QTQSTPGAIKRLSASVIVDGQ-------------LDEAASQNLRQTVAAAIGIDEARGDR 405

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + I +M F          +     +   R     +  L+ L+      FL     +    
Sbjct: 406 LVIQAMKFDTT--LADQMLAQLEAERRQRLIGAALVGLLVLLAAGGFGFLWYRRRKLAAL 463

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                +        L     +  + T                                  
Sbjct: 464 ARLVPQEGEQKAPSLKELLENPELMTAQGE----------------------------LA 495

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
             + +L      N E  A +++ W   E
Sbjct: 496 ILEEQLRLYASNNPEEVANLIKNWLAEE 523


>gi|169831911|ref|YP_001717893.1| flagellar MS-ring protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638755|gb|ACA60261.1| flagellar M-ring protein FliF [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 518

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 118/546 (21%), Positives = 209/546 (38%), Gaps = 45/546 (8%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +   +L  T  + L  +++  +++      FV   +Y  L+  LE  +   I   L    
Sbjct: 12  ERWQALSTTHKVALVLLVIGSLLVLYYLAQFVRQMNYTTLFAGLEPREAGAIVEQLDGMR 71

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I + +SD G++I VP + V +ARI LA  G    +  +G+ELFD+    G+T F Q++  
Sbjct: 72  IPYMLSDGGTTIQVPRAQVDQARIQLATSG-ALGADGAGWELFDRT-KLGVTEFEQQVNY 129

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAE 189
            RAL+ E+ RTI  +  + AARVH+V+P+   F    A PTASV ++             
Sbjct: 130 QRALQEELRRTIVQLDEVEAARVHLVLPEKSIFATEKAPPTASVAVKLRPGTDLNQSQVR 189

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAIQHEIEMNIN 246
            +  LVA +V  L   +V ++D  G+LL      +    +      I +  + E+EM + 
Sbjct: 190 GVVALVAGSVEGLTPENVHLVDMRGRLLHPDGHQDPVSGLALTHQEIKRNYERELEMRLQ 249

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L   +G D     V A+L+   QQ    V   +++V     + ++++ S T       
Sbjct: 250 NMLQRIVGPDRVVVMVSADLDFSQQQSVSTVPYGEAQVVSEQTVREESEGSGTGGGVPGT 309

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
                  +    +     +  +  ++E  +NY++ T          ++ RLS +VVV+  
Sbjct: 310 DANLPATYPLAGRPADAGAPTSFVREERTANYQVGTLQQTVIQPPGEVRRLSTSVVVDG- 368

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                           +   +I  +V+AA G N  RGD I +  M F             
Sbjct: 369 ------------DLSAARAEQIQGVVTAALGYNPERGDQILVAPMAFDTT---------- 406

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            + + L                  L+ +  L     L  I     G V G+ +   P   
Sbjct: 407 -YQEQLEEDLRRAEALAAERERRQLIYYAALAGGVLLLLIILIIAGVVVGRRLQRAPRPQ 465

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                  +   ++A  +++   F                        +     E  A+I+
Sbjct: 466 PQPEVEELSPLSVAAAAADPVFFL--------------SDKQRGARELARQKPEEVAQII 511

Query: 547 RKWARS 552
           + W   
Sbjct: 512 KVWLTE 517


>gi|168183269|ref|ZP_02617933.1| flagellar M-ring protein FliF [Clostridium botulinum Bf]
 gi|237796102|ref|YP_002863654.1| flagellar MS-ring protein [Clostridium botulinum Ba4 str. 657]
 gi|182673721|gb|EDT85682.1| flagellar M-ring protein FliF [Clostridium botulinum Bf]
 gi|229262258|gb|ACQ53291.1| flagellar M-ring protein FliF [Clostridium botulinum Ba4 str. 657]
          Length = 526

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 213/565 (37%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDQVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQNLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKTEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +  E G   ++      +       P D    D                           
Sbjct: 461 EDDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|218708823|ref|YP_002416444.1| flagellar MS-ring protein [Vibrio splendidus LGP32]
 gi|218321842|emb|CAV17815.1| Flagellar M-ring protein [Vibrio splendidus LGP32]
          Length = 580

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/557 (17%), Positives = 207/557 (37%), Gaps = 30/557 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 41  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  ++
Sbjct: 100 DTQKIEYSL--EGNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K 
Sbjct: 157 KERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243
              +++  +VA+AVP +    +TV D  G+LL++   +     +       +  +  +  
Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALRE 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +L+    +     +DP++   RS    +D      +   
Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNG--NVVA 334

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + +  KE   N+E++T        +  + R
Sbjct: 335 GIPGALSNQPPADASIPQDVAQMKDGTMMGQGSVHKEATRNFELDTTISHERKQSGTVNR 394

Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V + ++  L    G         S +  I +++    G +  RGD + + SM F  
Sbjct: 395 QTVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAP 454

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                   V +      +       +ALV +V  L+   L   A+++L N       ++ 
Sbjct: 455 QVTDIVADVPIWEHQHFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAADDDDQMY 511

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   +           G                     +     N +  +     +  ++
Sbjct: 512 GPDGMPIGADGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562

Query: 536 EINEERFAKILRKWARS 552
               E  A++++ W   
Sbjct: 563 ANEPELAAQVVKNWVAD 579


>gi|260866399|ref|YP_003232801.1| putative lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O111:H- str. 11128]
 gi|257762755|dbj|BAI34250.1| predicted lateral flagellar basal-body M-ring and collar protein
           [Escherichia coli O111:H- str. 11128]
 gi|323178508|gb|EFZ64086.1| flagellar M-ring protein FliF [Escherichia coli 1180]
          Length = 548

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 215/555 (38%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G   F+Q +  
Sbjct: 76  LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSRQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN---- 244
            AI HLV+ ++P L    V+V+D +G LLT        +  +      I  +I+      
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQSGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTHAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +       A++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTAQLTALLNNAAGIDAQRGDNLTLSLLNFVPQAVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPIIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPIITPESEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|126738564|ref|ZP_01754269.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6]
 gi|126720363|gb|EBA17069.1| flagellar M-ring protein FliF [Roseobacter sp. SK209-2-6]
          Length = 520

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 132/530 (24%), Positives = 206/530 (38%), Gaps = 34/530 (6%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
              LY  LE      +  +L +    + +   G SI VPS    + R+ LA++GLP++  
Sbjct: 1   MRLLYAGLESGSAGDVVRSLEQRGTPYEVR--GGSIYVPSDQRDELRLTLASEGLPANGG 58

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
             GYEL D ++ FG TS M +    RA EGE+ARTI     I  ARVHI       F++ 
Sbjct: 59  K-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIVGSPHISQARVHIANTGSNPFQRT 117

Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
                +  ++   +P     A AIR L+A+AV  L + +V V+D+ G L+ + E      
Sbjct: 118 VDPTASVSVVPLGSPITPAQANAIRFLIASAVTGLAVDNVAVIDANGALIGSTEAAAAAG 177

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
                        I   + + + A +G  N    V  +   DT+ IRE   DP+S+V  S
Sbjct: 178 AG----SDDRSQSIRDRVMRLVEARVGHGNAVVEVSVDTVTDTESIREKRVDPESRVAIS 233

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             + + A  S        VTV  N+P           S  NT    E+ NYEI+      
Sbjct: 234 TDVEERADSSSNQT--GEVTVASNLPDGDA--ASGEGSKNNTSATRERVNYEISETEKEI 289

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                 ++RL++AV++N    T   G +  + + +  LA + +++SAA G +  RGD IT
Sbjct: 290 IRGPGAIKRLTVAVLINGTTSTTATGETQFEPRPEEELAALRELISAAVGFDESRGDVIT 349

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL------- 460
           + SM+    +         SFMD L      +I      + +L++    +  +       
Sbjct: 350 LKSMELPSIE-PQGTEATASFMDNLYFDTMGIIQVAALALVSLILGLFVVRPILASSGSG 408

Query: 461 ----RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND-----------NIALDSSN 505
                   +  D      GG   L     +  +   +M  D                  +
Sbjct: 409 DSAALPALSSPDPMGDLPGGLPELPAMNTAPNMGDFMMNPDLGSNIALDGEIENEAGQFD 468

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                                   RL  MI   +E   +ILR W     E
Sbjct: 469 SLGGMGGLPALGGGMGGGGDNPVDRLREMIGERQEETVQILRGWLEENEE 518


>gi|148380620|ref|YP_001255161.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933327|ref|YP_001384906.1| flagellar MS-ring protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935162|ref|YP_001388375.1| flagellar MS-ring protein [Clostridium botulinum A str. Hall]
 gi|148290104|emb|CAL84223.1| flagellar M-ring protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929371|gb|ABS34871.1| flagellar M-ring protein FliF [Clostridium botulinum A str. ATCC
           19397]
 gi|152931076|gb|ABS36575.1| flagellar M-ring protein FliF [Clostridium botulinum A str. Hall]
          Length = 526

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D  A D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLEAQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|168180913|ref|ZP_02615577.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916]
 gi|182668331|gb|EDT80310.1| flagellar M-ring protein fliF [Clostridium botulinum NCTC 2916]
          Length = 526

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 214/565 (37%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAGKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D    D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|295319980|gb|ADG00358.1| fliF; flagellar M-ring protein FliF [Clostridium botulinum F str.
           230613]
          Length = 526

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 215/565 (38%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +  +RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNSRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKSEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D    D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|86146136|ref|ZP_01064462.1| flagellar M-ring protein [Vibrio sp. MED222]
 gi|85836083|gb|EAQ54215.1| flagellar M-ring protein [Vibrio sp. MED222]
          Length = 580

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/557 (17%), Positives = 207/557 (37%), Gaps = 30/557 (5%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +F  +   L   R ++L   I + + L +   F+V  P    L    E  ++  +   L
Sbjct: 41  SKFDMAVGDLDLLRQVVLVLSISICVALIVMLFFWVKEPEMRPL-GAYETEELIPVLDYL 99

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I++ +   G++ISVP+S     ++++   GL +   N+G ++  +   FG++  ++
Sbjct: 100 DTQKIEYSL--EGNTISVPASEYNSLKLNMVRAGL-NQERNTGDDILMQDMGFGVSQRLE 156

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +     + E ++A+ I+ +  +  A+V + +P    F +     +ASV +     +  K 
Sbjct: 157 KERLKLSRERQLAKAIEQMKQVRKAQVLLALPKQSVFVRHNQEASASVFLTLKTGTNLKQ 216

Query: 188 --AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI--VQAIQHEIEM 243
              +++  +VA+AVP +    +TV D  G+LL++   +     +       +  +  +  
Sbjct: 217 QEVDSVVDMVASAVPGMKTSRITVTDQHGRLLSSGSQDPMSAARRKEHELERNQEQALRE 276

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            I+  L   LG  N+ + V  +L+    +     +DP++   RS    +D      +   
Sbjct: 277 KIDSILIPILGFGNYTAQVDIQLDFSAVEQTRKRFDPNTPATRSEYTLEDYNNG--NVVA 334

Query: 304 SAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  N P                    + +  KE   N+E++T        +  + R
Sbjct: 335 GIPGALSNQPPADASIPQDVAQMKDGTMMGQGSVHKEATRNFELDTTISHERKQSGTVNR 394

Query: 357 LSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
            +++V + ++  L    G         S +  I +++    G +  RGD + + SM F  
Sbjct: 395 QTVSVAIKDRQSLNPDTGEVVHTPIPASEINAIRQVLIGTVGFDENRGDLLNVLSMQFAP 454

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                   V +      +       +ALV +V  L+   L   A+++L N       ++ 
Sbjct: 455 QVTDIVADVPIWEHQHFNDWVRWFASALVIIVVVLV---LVRPAMKKLLNPAADDDDQMY 511

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G   +           G                     +     N +  +     +  ++
Sbjct: 512 GPDGMPIGVDGETSLIG---------GDIEGGELFEFGSSIDLPNLHKDEDVLKAVRALV 562

Query: 536 EINEERFAKILRKWARS 552
               E  A++++ W   
Sbjct: 563 ANEPELAAQVVKNWVAD 579


>gi|255321871|ref|ZP_05363021.1| flagellar M-ring protein FliF [Campylobacter showae RM3277]
 gi|255300975|gb|EET80242.1| flagellar M-ring protein FliF [Campylobacter showae RM3277]
          Length = 564

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 115/576 (19%), Positives = 226/576 (39%), Gaps = 28/576 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56
           M     + Q  +   +L   + L+ A  +++ +   +      +S      Y  L+    
Sbjct: 1   MDFKTAIQQIGQVYHNLSLRQRLVAAGSVVLVVGFLVFLSIHKSSNENYDGYSVLFENTS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D   I   L +  + ++I + G +I VP+S V + RI +A+ G+       G+E+FDK
Sbjct: 61  AADSALIIQQLEKDKVKYKILNEG-TILVPNSDVYRERISIASLGILKDG-KVGFEIFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG T   Q++   RALEGE+ARTI+S++ I  A V I +P    F +    P+AS++
Sbjct: 119 -QEFGATDAEQKVKFQRALEGELARTIESLAPINKAIVRIAIPKETIFTERATPPSASIV 177

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLS 232
           +          K    I++LVAAAV NL    V ++   G  L   +   + + + + + 
Sbjct: 178 LNLKDGQSLNLKQITGIKNLVAAAVANLKPEQVKIVSQDGVPLGEEDGEYDSDQITQQIR 237

Query: 233 IVQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
             +  +H +E  I   L+  +G  D   + V  + +   +  +   +DP+S       + 
Sbjct: 238 YKRDAEHNLEEKIINVLSPIVGGSDKVVAKVTIDFDFARKDSQSETFDPNSVARSEQNVE 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  Q S+ ++ +       N+  V        +  E   K    +NYEI+ K        
Sbjct: 298 EKRQGSKEAEVQGVPGAVSNIGPVEGL--QDGKMKELYSKSSSTTNYEISKKVERVKDQF 355

Query: 352 YKLERLSIAVVVNKGRLTEVLG------RSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
            K+ RLS AVVV+     +           A        LA I+ ++  + G +  RGD 
Sbjct: 356 AKINRLSAAVVVDGKYENKKDEKGNPTSEIAYVPLDKEQLARIDALIRQSIGFDQNRGDE 415

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           +T+++ +F         +   SF ++   +    +  L +L   +L+       +     
Sbjct: 416 VTVSNFEFQRQDGQTPASKVQSFFEL---YVVPFLPILKYLFVAILLYVFYKKVITPFMT 472

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                  E      LS   +    +   +     A     + +       +  +      
Sbjct: 473 KMLEDVKEEEID--LSENEVQLEDSEDTLEKFQAARKKVEEQLGIGDNFNEDDLR---YD 527

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561
               ++  +++   E  A +L+   +++ +    + 
Sbjct: 528 VLLEKMKLVVQDRSEEIAVLLQDMIKNDSDFSNRKD 563


>gi|261209869|ref|ZP_05924170.1| flagellar M-ring protein FliF [Vibrio sp. RC341]
 gi|260841055|gb|EEX67580.1| flagellar M-ring protein FliF [Vibrio sp. RC341]
          Length = 580

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 214/563 (38%), Gaps = 30/563 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I ++  +   +   L   R ++L   I + + L +   F+V  P    L    E  ++ 
Sbjct: 35  DINEKSSKMDFTVGDLDLLRQVVLVLSISICVALIVMLFFWVREPDMRPL-GAYETEELI 93

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +    +++  +G++I VP S     ++ +   GL +    +G E+  +   FG
Sbjct: 94  PVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMVRAGL-NQERQAGDEILMQDMGFG 150

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RA 179
           ++  +++     + E ++A+ I+ +  I  ARV + +P    F +     +ASV +  R 
Sbjct: 151 VSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLALPKQSVFVRQNQEASASVFLSLRT 210

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                 +  +A+  +VA+AVP +    VTV D  G+LL++   +     +        Q 
Sbjct: 211 GANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRLLSSGSQDPVSAARRKEQELEKQQ 270

Query: 240 E--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           E  +   I+  L   LG+ N+ + V  EL+    +    V+DP++   RS    +D    
Sbjct: 271 EEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQTRKVFDPNTPATRSEYTLEDYNNG 330

Query: 298 ETSQPESAVTVEQNMPHVSDRKVP-------LPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +          N P                    + +  KE   N+E++T        
Sbjct: 331 --NVVAGVPGALSNQPPADASIPQDVAQMKDGSVLGQGSVHKEATRNFELDTTISHERKQ 388

Query: 351 NYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
           +  + R ++AV V          G        ++ +  I +I+    G +  RGD + + 
Sbjct: 389 SGVVNRQTVAVAVKSRSSVNPDTGEVTYTPLSEAEINSIRQILIGTVGYSENRGDLLNVL 448

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           SM F E ++     V +      +     + +ALV ++  L+   L   A+++L N    
Sbjct: 449 SMPFAEPEVEQIANVPIWENPNFNDWVRWLASALVIIIVVLV---LVRPAMKKLINPTAD 505

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              ++ G   +           G   +     +  +              N +  +    
Sbjct: 506 SDEQMYGPDGMPIGADGETSLIGSEIDSGELFEFGSGIDLP---------NLHKDEDVLK 556

Query: 530 RLLHMIEINEERFAKILRKWARS 552
            +  ++    E  A++++ W ++
Sbjct: 557 AVRALVANEPELAAQVVKNWMQN 579


>gi|322806993|emb|CBZ04563.1| flagellar M-ring protein FliF [Clostridium botulinum H04402 065]
          Length = 526

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 214/565 (37%), Gaps = 51/565 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +      +  T   + + +  + + L  I   +A   +     Y  L+  ++ +D
Sbjct: 1   MNKLKEFFKGLKEKWTGFSKVKKIAFSIIFLGIITSIIALSLYFGKTKYAVLFSNMDSND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L +  ++ ++   G++I VP   V + R+ + ++ +P ++ + G+E+ DK   
Sbjct: 61  SGTVLQKLKDKKVEAKV--EGNNILVPKDKVDELRMQMLSE-VPLTNGSQGFEILDKSQ- 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GE+ RTI+    +   RVH+V+P+  +F K      ASV +  
Sbjct: 117 FGETDQEMKINYQRALQGELERTIKGFPQVDNTRVHLVLPEETAFVKETQPGRASVTLNL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  ++I  LV+ +V N+   +V V+D+   LLT N        E       K
Sbjct: 177 KQGQTLSKEQVKSIVALVSGSVKNIPKENVEVIDNNMNLLTKNLFDASGSLEEATTSAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  + +++  +   L A  G D  +  +  +L+ D  +   + YDP + V     
Sbjct: 237 QQQLQKNYEKDLQNRLVSMLEAVYGKDKVKVNINTDLDFDAVKTNSVTYDPKNVVVSEHS 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  Q +      +   V+ NM +   R        E + + E   NYEI+     +  
Sbjct: 297 IKEKNQNNAGGNNTNGSVVDNNMVN---RTTQNNNGSETSSRDENTKNYEISKTQQDSIK 353

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ ++V++                 +   + +  +  +A G + +RGDTI + 
Sbjct: 354 APGSVKRLTASIVLDGN-------------IDEETRSAVRNLAVSAIGYDEKRGDTINVE 400

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F                          +   + L   LL+  +    +++ +  ++ 
Sbjct: 401 GLPFDTAAKDKVKKDLEDMQKAEKTKERIKLFTAIGLGVLLLLGAIIFFIIKKRNEDEEY 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           ++ E G   ++      +       P D    D                           
Sbjct: 461 EEDEEGLDILIDDNDSETKQVPKFKPIDLETQDEKTHVENE------------------- 501

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    +   ++ A+I++ W   + 
Sbjct: 502 -IRKYAKDKPDQVAEIIKSWLAEDE 525


>gi|311085815|gb|ADP65897.1| flagellar MS-ring protein [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 489

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 101/517 (19%), Positives = 193/517 (37%), Gaps = 47/517 (9%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           Y  L   D   I   L+E  I ++ +D+   I VP   V + R+ LA   LP   S  G+
Sbjct: 2   YNHLSNEDSGSIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNLPRGGS-IGF 60

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
           EL DK   FG++ + ++I   RALEGE+ARTI+ I+ +  AR+HI       F +   + 
Sbjct: 61  ELLDKE-KFGISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKS 119

Query: 172 TASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILG 228
           +AS+++              AI HL+++++ +L + ++T++D +GKLL    +E   +  
Sbjct: 120 SASIILELQPGRNLNTGQINAIMHLISSSISDLPVENITIVDQSGKLLNQTSVEYDQVND 179

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
                 + I+      I   L   +G+ N  + V A+++ + Q+  +  Y P+S  +   
Sbjct: 180 SQFKYTEEIETRYRNRIKNILEPLVGIGNIYAQVTAQIDFNAQEKTQEKYSPNSDHKNQS 239

Query: 289 RLS-------KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT------DKKEEQ 335
             S       +  + +   +    ++   N  + ++          N         ++  
Sbjct: 240 IRSHQIIIHNEIEKSNIQEETPIPLSNSNNHVYFNNNIKNSKNLKNNYIPVDSKINRDNT 299

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            NYE+N     T  +  +++RLS AV+VN                    +  I  ++  A
Sbjct: 300 VNYELNHSVSHTKMNIGEIKRLSAAVIVN----FSKDKNGKFVPLSTQKIKNIEHLIREA 355

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G +  RGD++ + +  F +        +        S                    + 
Sbjct: 356 IGYSKARGDSVHLVNASFAKYDQKIPVHINHINTFRKSNFLYNFAP------------WF 403

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
              AL  L                 + P                      ++I   +   
Sbjct: 404 CSFALLFLLLKKYICPFSKNNTFQNTIPV-------------QEKKSIDTRNIIEKNTFQ 450

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
               N+  + +   ++ ++   N    A I+R+W   
Sbjct: 451 VDLQNNTNTDKLIHKICNISNQNPRTIALIIRQWMSD 487


>gi|294636866|ref|ZP_06715198.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685]
 gi|291089927|gb|EFE22488.1| flagellar M-ring protein FliF [Edwardsiella tarda ATCC 23685]
          Length = 419

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/403 (24%), Positives = 169/403 (41%), Gaps = 37/403 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
                    +     + L     V I + +    +  +P Y  LY  +   D   I   L
Sbjct: 18  NSIKAILERVRANPKIPLLLASAVAIAIVVVLALWARAPDYRVLYSNISDRDGGAIVTQL 77

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           S+ NI +R ++NG+++ VP+  V   R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 78  SQMNIPYRFANNGTTLMVPADKVYDLRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 135

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--AINPSVY 185
           ++   RALEGE+ARTI+++  +V+ARVH+ +P    F +   +P+ASV +          
Sbjct: 136 QVNYQRALEGELARTIETLGPVVSARVHLALPKPSLFVREQKQPSASVTLTLEPGRALDD 195

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMN 244
               AI ++V+++V  L  G+VTV+D  G LLT  +   R++    L     ++  ++  
Sbjct: 196 GQINAIVYMVSSSVAGLPPGNVTVVDQFGHLLTQPDGTGRDLNAAQLKFTSEVEGRLQRR 255

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL---SKDAQRSETSQ 301
           I   L   LG  N  + V A+L+   ++  +  Y P+    ++         + +S    
Sbjct: 256 IETILQPMLGSGNVHAQVTAQLDFANREQTDEEYKPNQLPNQAAIRSQQISQSDQSGGQL 315

Query: 302 PESAVTVEQNMPHVSDRKVPLP-----------------------------RSLENTDKK 332
                    N P                                        S     ++
Sbjct: 316 NGGVPGALSNEPAPPATGNIDKPRNSTGTNGRNRNESMPSRSSTLSNNGRLASRNENIRR 375

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRS 375
           +E +NYE++     T      +ERLS+AVVVN     +    +
Sbjct: 376 DETTNYEVDRTIRHTQERAGGIERLSVAVVVNYATTPQGKEVA 418


>gi|312879583|ref|ZP_07739383.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260]
 gi|310782874|gb|EFQ23272.1| flagellar M-ring protein FliF [Aminomonas paucivorans DSM 12260]
          Length = 524

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 118/569 (20%), Positives = 206/569 (36%), Gaps = 60/569 (10%)

Query: 1   MAILDQLLQFFK-SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + Q  ++ K    SL R + L L     + +   +    +   P Y+ L+  LEV D
Sbjct: 1   MDKIRQFGEWLKAFWGSLQRWQKLSLVGASALVLCSLVLLVVWAGRPAYEPLFSGLEVED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L E  I FR     ++I +P   V + R+ LA QGLP      G+ELFD+   
Sbjct: 61  QASIVAYLKEQKIPFRNDPAANAILLPREKVYETRLALAQQGLPKGGV-VGFELFDQ-PK 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G++ F Q++   RALEGE+ARTI  I  +  ARV+IV+P+   F +     TASV++R 
Sbjct: 119 MGMSDFQQKVAYSRALEGELARTIGQIEAVKFARVNIVIPEQRLFLEQQQPSTASVLVRL 178

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----------NEMERNI 226
                   +  + I HLVA +V  L+  DVTV+D+ GK+L+                R +
Sbjct: 179 KEGQEIGQEQVKGIVHLVARSVEGLNPEDVTVVDTAGKVLSDLIQDDSLIYMSGSDGRAV 238

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
                 + +  + E+E  +   L    G       V  +L+ D +      + P    + 
Sbjct: 239 SSVQRELERQQEQELERKVRLMLEKVFGPGKAVVRVRVDLDFDKKSTSRKEFIPGPNGKG 298

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDR-KVPLPRSLENTDKKEEQSNYEINTKSI 345
            +R  ++ + S                ++               ++ +  +N++I T+  
Sbjct: 299 VVRSQQNTEESYVGPGMPPGGAPGTTTNIPGYVVNTGTGGNVEYNRTDTVTNFDITTQES 358

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
                   + RLS +V+V+                       +   V+AA G N  RGD 
Sbjct: 359 QQVATPGAIRRLSASVLVDG-------------TLNAQQTQSLKDSVAAAIGFNQLRGDQ 405

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + I  M F             +               L+ ++G  +  ++    L  L  
Sbjct: 406 LVIQGMKFDTTLADQLLAQMEAEQRQKVILALVGAALLLLIMGAGIFLWIRRRRLAALRR 465

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           +   ++G+                + G +                               
Sbjct: 466 LMPKEEGDQVPSLKDLLEHPELMTSQGELA------------------------------ 495

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEI 554
             + +L      N E  A +++ W   ++
Sbjct: 496 ILEEQLRVYATNNPEEVANLIKNWLAEDL 524


>gi|51597648|ref|YP_071839.1| flagellar MS-ring protein [Yersinia pseudotuberculosis IP 32953]
 gi|51590930|emb|CAH22586.1| putative flagellar M-ring protein [Yersinia pseudotuberculosis IP
           32953]
          Length = 546

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 124/559 (22%), Positives = 232/559 (41%), Gaps = 27/559 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q F     LG    +IL S   + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKFSP-GQLGENTKIILMSAAALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA-- 179
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD ++      +   +
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDPRIND---ENIQQE 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P    +    P ++    + + Q  Y  +       +  YKLE
Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+ L+  L         ++R             
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLF---GVRPLMKRYSRKGSENLPLAI 462

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +                 +     ++ +      S +L  + +   +K     L  + 
Sbjct: 463 SSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETK--IAHLQQLA 520

Query: 536 EINEERFAKILRKWARSEI 554
           +   ER A+++++W  S  
Sbjct: 521 QSETERTAEVIKQWINSNE 539


>gi|301646796|ref|ZP_07246650.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|307136844|ref|ZP_07496200.1| flagellar MS-ring protein [Escherichia coli H736]
 gi|331640699|ref|ZP_08341846.1| flagellar M-ring protein FliF [Escherichia coli H736]
 gi|301075031|gb|EFK89837.1| flagellar M-ring protein FliF [Escherichia coli MS 146-1]
 gi|315616841|gb|EFU97458.1| flagellar M-ring protein FliF [Escherichia coli 3431]
 gi|331040073|gb|EGI12281.1| flagellar M-ring protein FliF [Escherichia coli H736]
          Length = 548

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 113/555 (20%), Positives = 218/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
               +   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLVDNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|257484920|ref|ZP_05638961.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 447

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 169/425 (39%), Gaps = 41/425 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P           +                                      
Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAE 387
             + +   N+E++     T     +L RLS+AVVV+         G         + LA 
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVTRAPWSAADLAR 442

Query: 388 INKIV 392
             ++V
Sbjct: 443 FTRLV 447


>gi|256376473|ref|YP_003100133.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827]
 gi|255920776|gb|ACU36287.1| flagellar M-ring protein FliF [Actinosynnema mirum DSM 43827]
          Length = 559

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 108/565 (19%), Positives = 214/565 (37%), Gaps = 30/565 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I            +    + L+  + +L  +        + + P Y  LY  L   D + 
Sbjct: 6   IKASAQGVLSGFKAFTAGQKLVAGATVLAVVGAIAFYFLWASKPTYAPLYTSLASKDASA 65

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L+ A + + ++D G +I VP   V   R+ ++A  LP S S++GY L D+      
Sbjct: 66  IVDQLTAAGVTYELTDGGQTIMVPQDQVYPMRLKMSAANLP-SQSDTGYALLDQ-QGVTT 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           + FMQ++   RA+EGE+  TI++I G+ +A VH+ +P    F    ++PTA+V++     
Sbjct: 124 SEFMQQVGYQRAMEGELGSTIKAIDGVTSASVHLAIPQKDVFSDSDSKPTAAVLVGTGAG 183

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237
                   + I HLV+++V  +    VTV  + GK+L+    +              +A 
Sbjct: 184 KSLSQAQVQTITHLVSSSVEGMSADGVTVAGTDGKVLSTGGADGASASANGDRDDQTKAF 243

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +  +  ++ + L+  +G D+    V A+L+ D  + +   Y            S     +
Sbjct: 244 EQRLSTSLQQMLSQVVGQDHAVVQVTADLDYDQTETKSQTYTSGDGTAPLSESSTTESYT 303

Query: 298 ETSQPESAVTVEQ------NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                 +A  V        N    +             ++++   N  +N+         
Sbjct: 304 GDGGQNAAGGVLGSTNGTLNGLEGNTTNGTGGSGNGTYNQEKSTRNNAVNSVIETRQSAP 363

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            K+ +L +AV++++     V             +AE+ +I S+A  +++ RGDT+ ++SM
Sbjct: 364 GKVRKLGVAVLLDQKTAGAVD------------MAEVERIASSAVALDTARGDTLAVSSM 411

Query: 412 DFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            F           V              ++   V  +G L +  + + A RR      A 
Sbjct: 412 PFDTSAAQQGEAAVAAQQAQAQQDELMGMVKTGVAGLGVLALLIMTMIATRRRRKRAAAA 471

Query: 471 KGEVGGKSILSPPPIS----SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                 K       +     S +   +     +   +    +    R     +     ++
Sbjct: 472 AEAELAKLDELKAQLERTRTSEIEAAIAEKQALVAGNDFPQLSGPKRAEVDPLVVAEQEK 531

Query: 527 SDLRLLHMIEINEERFAKILRKWAR 551
               +  +++   E  A++LR W  
Sbjct: 532 RMGEIQSLVDEQPEEVARLLRGWLA 556


>gi|187935660|ref|YP_001885041.1| flagellar MS-ring protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723813|gb|ACD25034.1| flagellar M-ring protein FliF [Clostridium botulinum B str. Eklund
           17B]
          Length = 520

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 117/565 (20%), Positives = 227/565 (40%), Gaps = 57/565 (10%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  +L+++   ++   +  +   + +    +  I+   +   + +S  Y  L+  L+  D
Sbjct: 1   MNKLLEKVKGLWEKFKTQSKKIKIAIFVSCVAVIIAIASTAIYTSSNKYQVLFSNLDPKD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L+E  +  +I   G +I VP+  V + R+ LA +     S +SGYEL D  +S
Sbjct: 61  AQTILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSS 115

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--I 177
           FG+T    ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V   +
Sbjct: 116 FGMTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLEL 175

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKS 230
           +  +       ++I  LV+ +  N+   ++ V+D    LLTAN  +          L K 
Sbjct: 176 KTGSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQ 235

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
            S+ +  + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S + 
Sbjct: 236 YSLEKNYESKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQT 294

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            K+   ++ +   S   V+ N+ + +D       +  N+ ++E+++NYEI          
Sbjct: 295 IKEVNNTDANGNISESPVDNNISNTTDD---TNNTKSNSSREEQKNNYEIGKTETKVISA 351

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             +++R++ +VVV+                  +    I   VS A G NS RGD I++  
Sbjct: 352 PGEVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLG 398

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           M+F  +   ++     +F     +        +  +    L+  + +   +R  N     
Sbjct: 399 MNFDPSLKEDTQNQTDAFNAEAKQKEMQKYMIMGAIALLALIVIIVILVKKRRKNAK--- 455

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL- 529
                                    +D   LD    D             +   K     
Sbjct: 456 ---------------------DEYDDDTQLLDVVVGDEKEPEIFEPIEFETKNEKIHMEN 494

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +        E+  +I++ W   + 
Sbjct: 495 EIKKYATDKPEQVVEIIKSWLSEDE 519


>gi|260893875|ref|YP_003239972.1| flagellar M-ring protein FliF [Ammonifex degensii KC4]
 gi|260866016|gb|ACX53122.1| flagellar M-ring protein FliF [Ammonifex degensii KC4]
          Length = 498

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/561 (20%), Positives = 203/561 (36%), Gaps = 70/561 (12%)

Query: 1   MAILDQ--LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           MA+  +    ++     S    + + +    +  I   +    ++   +Y  L+  L   
Sbjct: 1   MALATKPVWERWKSRWESFSPVQRVAVVVAGVALIACCVFLPLYLAQLNYAPLFKGLRPE 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKV 117
           D   +   L E  + +R++D G++I VP   V K R  LAA+G LP   +  G+ELFDK 
Sbjct: 61  DAGAVVQKLEEMKVPYRMTDGGTTILVPKDQVYKVRAELAAKGALP--GAGKGFELFDKT 118

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
              G+T F +++   RAL+ E+ RTI    G+  ARVH+V+P    F     +P+ASV++
Sbjct: 119 -RLGITDFEEQVNYQRALQEELRRTILQFDGVEDARVHLVLPPRSPFVTEQPKPSASVVL 177

Query: 178 RAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSI 233
           +       K    E I  LV+ AV  L   DV V+D+ G++LT       +        +
Sbjct: 178 KLKPLEKLKPEQVEGIVALVSGAVQGLKPEDVRVIDTRGEVLTPPTQGGEVGAVRNQQEL 237

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           V A + E+E  +   L   LG       V A+ +   +++  +   P  +V  S     +
Sbjct: 238 VLAFERELERRVKNLLDQILGPGKAAVMVNADFDFSRREV--VTVLPQGQVPVSEHTLTE 295

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
              ++ +              V+          +N  K+E   NY++  +         +
Sbjct: 296 QGAAQAAA------------GVAPTYPAGGAGGQNYSKQETTRNYQVGEQREKVIEVPGR 343

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           L RL+ +VVV+                    + +I  +V+ A G N +RGD IT+ S  F
Sbjct: 344 LRRLTASVVVDGN-------------LDPVTMQKIQNLVAGALGYNPQRGDQITVDSFTF 390

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
                               +  A      +                             
Sbjct: 391 DRTYQRQMEAEMAKAEAKARQEAAKRRLYTLI---------------------------- 422

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                      +   V   L+         +          + +      + Q    +  
Sbjct: 423 -----GAGAGGLLGLVLLLLLRRRLRRAPEAPVVEEVVPVAVTAVPPPSPTDQKFAEVKE 477

Query: 534 MIEINEERFAKILRKWARSEI 554
           + E   E  A+I++ W RSE 
Sbjct: 478 LAEKRPEEVAEIIKVWLRSEE 498


>gi|147678424|ref|YP_001212639.1| flagellar MS-ring protein [Pelotomaculum thermopropionicum SI]
 gi|146274521|dbj|BAF60270.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Pelotomaculum thermopropionicum SI]
          Length = 506

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/560 (19%), Positives = 211/560 (37%), Gaps = 62/560 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M+  D   +F +   SL +T+ +I   V    ++           P Y  L+  LE  D 
Sbjct: 1   MSPGDLAARFRERWQSLSQTQKVISVLVASGALVCLFYLGQLATRPAYAPLFTGLEPKDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L    I ++I+D G +I VP   V + RI   A          G+ELFD+ +  
Sbjct: 61  GVIVDELKALKIPYQIADEGKTIKVPEDKVYEVRIQ-LASSGALGGGGMGFELFDQ-SKL 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G T F Q++   RAL+ E+ RTI  + G+  ARVH+V+P    F      P+A+V ++  
Sbjct: 119 GQTDFEQQVGYQRALQEELRRTIVQLEGVEQARVHLVIPQKSVFIGERGTPSAAVALKLK 178

Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232
                  +  + I  L+  +V  L   +V ++D+ G +L+ +       +      +   
Sbjct: 179 PAARLKPEQVQGICDLLVGSVEGLKPENVHIIDTEGNVLSDDLKSGEWAVGTKTALEHQK 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
             +  + E+E  + + L   +G +   + V A+L+ + QQ    V    + +  S  + +
Sbjct: 239 ARREYEKELEKRVQQMLTQIMGQNKAVAMVTADLDFNQQQTTSTVSSNPNNLRISEHIVR 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +      +        + N+      +     +     ++E   NY++NT          
Sbjct: 299 ETGGGTEAGGPPG--TDSNLSTYPALQGAGTTN---YSREESTINYQVNTVQETVVKAPG 353

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RLS +VV+N             +      + ++  +V+AA G +  RGD I ++SM 
Sbjct: 354 TVRRLSASVVLN-------------ETDGPVDVQKVRDVVAAAIGYDQARGDQINVSSMA 400

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++ L                     + AL      L+V  +    L R   +   ++ 
Sbjct: 401 FDDSYLKKVEAEMAEAESRARFKERLYLYALSGGALLLVVLSILALLLWRRRAVQRVEE- 459

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                                            +  F   R +Q++    + +    ++ 
Sbjct: 460 ---------------------------------EPEFVTVREMQAQEERRIREDKQEQIR 486

Query: 533 HMIEINEERFAKILRKWARS 552
            M +   +  A+IL+ W + 
Sbjct: 487 DMAKERPKDVAEILKVWLKD 506


>gi|326389483|ref|ZP_08211050.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994488|gb|EGD52913.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus JW
           200]
          Length = 506

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/561 (18%), Positives = 206/561 (36%), Gaps = 70/561 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + + + L  + ++  +      + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L     I ++IS++G++I VP+    + R+ LA +G+P    +    +    NS 
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F        A     + 
Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235
           ++          + I   V+ +V  L   +VTV+D+ GK+LTA             ++ +
Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q +++ ++   L    G  N        LN D +    I Y P   +        + +
Sbjct: 241 KVQEDLQNSLQTLLEQMFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++  +Q  S+     N P V+           +  + E   NYEIN    +      
Sbjct: 301 LKEKATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+E +S+AVVVN             Q   +S   +I  +V+ A G +S     +++  + 
Sbjct: 358 KIESISVAVVVN-------------QNLNNSMKQQIADLVTKAAGGDSLV--KVSVQGIQ 402

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++         +          +  +   V+ +   LV   GL  +       +    
Sbjct: 403 FNQD---------LLKTMQQQAKVSKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               + + +  PI                                 I+     +   ++ 
Sbjct: 454 TAEQEVLATVEPIEP----------------------------IEEIDFSEKDEKKKQIE 485

Query: 533 HMIEINEERFAKILRKWARSE 553
            +I+   E   +++R W   E
Sbjct: 486 RLIKEKPELVVQVIRTWLNEE 506


>gi|170021374|ref|YP_001726328.1| flagellar MS-ring protein [Escherichia coli ATCC 8739]
 gi|169756302|gb|ACA79001.1| flagellar M-ring protein FliF [Escherichia coli ATCC 8739]
          Length = 548

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 114/555 (20%), Positives = 217/555 (39%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + FMQ +  
Sbjct: 76  LSYRIDPQSGQILVPEDELSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFMQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF          +  V +           
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRLHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGSRNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------RKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|32266110|ref|NP_860142.1| flagellar MS-ring protein [Helicobacter hepaticus ATCC 51449]
 gi|32262159|gb|AAP77208.1| flagellar basal body M-ring protein FliF [Helicobacter hepaticus
           ATCC 51449]
          Length = 570

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 108/573 (18%), Positives = 214/573 (37%), Gaps = 29/573 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP-----HYDNLYVKL 55
           M +     Q  +    L + + +I+ +  +V I        F         +Y+ L+  L
Sbjct: 1   MDLRLIFEQIARVLNKLNKKQRIIILTTFVVLISFLTYLVLFKVETKNEYENYEVLFSNL 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
              D   I   L +  I ++I  + + I VP   V + RI L + GLP +S N G+++  
Sbjct: 61  SAEDSALILQKLQQDKIPYKIPQD-NIIMVPKDNVYEQRITLGSLGLPKTSKNVGFDILL 119

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           + +  G T F Q++  + A + E+ARTI+S+  I  A V+I MP    F + G  P+ASV
Sbjct: 120 E-SPVGETPFTQDMKYLIAKQNELARTIESLRPIEKAIVNISMPKESLFVQGGHPPSASV 178

Query: 176 MIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER------NIL 227
            +   +      +    ++HLVAAAV  L   +V +++  G+LL   +            
Sbjct: 179 KLTVRDNMFLSTEQVIGVKHLVAAAVERLTPENVKIINQEGELLGEEDEAALQGVLAKKA 238

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
                  QA ++ +E  I K L   +G    ++ V  + +   +   +  +D +  +   
Sbjct: 239 AFQRRYQQAAENAMEAKIIKFLQPSVGDG-VQAQVTMDYDFSVRNSTQEEFDQNPVIRGI 297

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
               K+ +     Q      V  N+  V   K      +E   + E   N EI  K  + 
Sbjct: 298 REYEKERKGFRPPQIGGVPGVVSNIGPVQGLK--DDEMMEWEKESEVVQNNEIGKKVSSI 355

Query: 348 THDNYKLERLSIAVVVN--KGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGINSRRG 403
           +     L+R+S +V+++     +    G +      +    + +  + V  A G N  RG
Sbjct: 356 SEHYGVLKRVSASVMIDGTYEEVVGEDGETRLEYSPRSQEDMDKFLEGVKKAIGYNEARG 415

Query: 404 DTITITSMDFLENQLFNSGTVQVS-FMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           D + + +M F   QL          F D + R+ +  +  L +++  +++       +  
Sbjct: 416 DQVEVINMPFRNTQLDYRPKDAWEAFSDKVERYLSPFMPLLKYVIVAVILLVFYKKIVAP 475

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                   + E                           ++           +        
Sbjct: 476 FAERMLEVQEEEDDDIESLMQIDDDDDDLNKFSELRKRVEDQLGLSSGLDEDNI------ 529

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             +    ++ ++I    +  A + +   + E++
Sbjct: 530 KYEVLLEKMRNVISERPQEIASLFQTLIKDELD 562


>gi|118444659|ref|YP_877975.1| flagellar MS-ring protein [Clostridium novyi NT]
 gi|118135115|gb|ABK62159.1| flagellar M-ring protein FliF [Clostridium novyi NT]
          Length = 523

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/567 (19%), Positives = 214/567 (37%), Gaps = 58/567 (10%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  I ++          L + + +  + + +  I   +    F+N+  Y  LY  ++ +D
Sbjct: 1   MDKIKEKFKNLIDKFKELSKGKKIAFSILGVGIISGLIYLIVFLNTTKYAVLYKDMDPND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L+E  +++++ +  SSI VP   V + R+ LA Q    +S + GYE+ +  +S
Sbjct: 61  AQTVMTKLNEKKVEYKVEN--SSIKVPEEKVSELRLELAPQ---LTSGSKGYEILENADS 115

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG+T   +E+    ALEGE+A+ I+S+  +  A+V +VMP  G+F K      ASV I  
Sbjct: 116 FGMTDKERELNYKIALEGELAKNIKSLPEVKDAKVLLVMPQEGNFFKQAENAQASVRIEF 175

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANE--MERNIL 227
                   +  +AI  LV  +V NL   +V ++        D T  L +  +     ++ 
Sbjct: 176 NEGKSISKEQIKAIVSLVTGSVKNLKKENVKIIGVLNGKTKDLTDDLFSEEDGKDLTSVT 235

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K     + ++ E    I   L    G    ++AV  +L+ D  +    V+DP++     
Sbjct: 236 DKQNKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN----- 289

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +  S++ ++      +  V+    + +             ++  ++   NYE+      T
Sbjct: 290 VVRSEEIEKDTEKSKDGKVSA-GPVDNNMSNTYNNQDGNSSSTHEKTTRNYEVGKIEQKT 348

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                K++++S +V +N   L  V               +IN +V+ A   +  RGD IT
Sbjct: 349 VGAPGKVKKISASVTINDENLNPVD------------KDKINSLVAGAISYDENRGDIIT 396

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +  + F E     +        +       T I   +      L+   G+ AL R     
Sbjct: 397 VEGLKFNEINDAKAEEEAKKQAEEQKAKQRTFIYKCIGGAVIALLLIGGIIALIRKRKNK 456

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                                        + I +   ++          +      S   
Sbjct: 457 K---------------------EEAEEQIEGIDMLIDDEVEPKEPLKPINFDEENESTHI 495

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
           +  +        ++ A+I++ W   + 
Sbjct: 496 EKEIKKYATEKPDQVAEIIKAWMAEDE 522


>gi|57506034|ref|ZP_00371957.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195]
 gi|57015642|gb|EAL52433.1| flagellar M-ring protein FliF [Campylobacter upsaliensis RM3195]
          Length = 560

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/574 (20%), Positives = 230/574 (40%), Gaps = 26/574 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56
           M   + LLQ  +   +L R + +++A+ I+V +   +    F N P     Y  L     
Sbjct: 1   MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            S    I   L +  + +R+ +  S+I VP   V + ++ +A++GL   +   G+E+FDK
Sbjct: 61  PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDN-RVGFEVFDK 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TS  +++   RAL+GEIAR I+++  I +A V + +P    F +    PTASV 
Sbjct: 119 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 177

Query: 177 IRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSI 233
           I   +      K  + ++++VAA+VP L   +V + D  G  L   +     +L   +  
Sbjct: 178 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 237

Query: 234 VQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  + E+E  I  +LA F G  D  + +V  E +   Q+ +  +YDP++ V     L++
Sbjct: 238 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +    +  + +       N+  V          +++  K +  +N EI+     T     
Sbjct: 298 EKTGRKDPEIQGVPGAVSNIGPVEGL--ANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 355

Query: 353 KLERLSIAVVVNKGR--LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
              R+S AV ++     + +  G   S       + L  +  IV      N+ RGD++ +
Sbjct: 356 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 415

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            ++ F    +     V+  +     R     I  + + +  +L+ F     +        
Sbjct: 416 QNLPFYRESIKVESKVKTFY----GRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 471

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +     +     P          +   N A     + +       +  I         
Sbjct: 472 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQ---YDVLL 526

Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562
            +L  ++    E  A +L+   +++ +    + I
Sbjct: 527 EKLRTLVSDKSEEIAALLQNLIQNDSDFSENKDI 560


>gi|238762371|ref|ZP_04623342.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
 gi|238699356|gb|EEP92102.1| Flagellar M-ring protein [Yersinia kristensenii ATCC 33638]
          Length = 541

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 114/559 (20%), Positives = 225/559 (40%), Gaps = 32/559 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q   +   LG+ +  IL   + + +   +    +  S  Y  L+   E   V +
Sbjct: 1   MLDKIKQQLPAIR-LGKNQKSILMGAMALLVTGAIIFSLWRGSQGYTALFGSQEHIPVTQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   I V  + +G+ARI LAA+G+ +++  +GYEL D+    G 
Sbjct: 60  VVEVLDGEAIAYRINPDNGQILVAENQLGRARILLAAKGI-TATLPTGYELMDQETMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179
           + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF    +  +  +  + ++ 
Sbjct: 119 SQFIQNVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRSESSASVILRLKY 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLKTEQVGAIVQLVAGSIPAMKAANVRVVDQHGELLSEAYQANSKGMTNVKSGAELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E +I   L++ +GV+N+R +V  +L++   +     Y       R    +   +
Sbjct: 239 YLQSTTEKSIANLLSSVVGVNNYRISVATQLDLSRVEETLERY---GAEPRVSDENIQQE 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                          N P    R    P  +    + + Q  Y  +       H  +KLE
Sbjct: 296 NGNEDMAMGIPGSLSNQPSAQPRNTNAPAMM---SRSQAQRKYAYDRDIRHVRHPGFKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AV++NK          A        L E+ +++  A GI+ +RGD++T+  + F  
Sbjct: 353 KMTVAVILNKSA-------PALDKWTAEQLNELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +         R            + +LL    G+  L    +  D K   + 
Sbjct: 406 PIVIEESVIPWWQDATTFRW----AEIAGIGLLSLLFLLFGVRPLMARLSRPDDKHATLA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                  P  ++         ++     S     S   +                L  + 
Sbjct: 462 MSENADSPNATN------TAGESGTATESRLPASSFKEDDNLPPQGSGLDTKIAHLQQLA 515

Query: 536 EINEERFAKILRKWARSEI 554
           +   ER A+++++W  +  
Sbjct: 516 QSETERVAEVIKQWINNNE 534


>gi|300817286|ref|ZP_07097504.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
 gi|300530262|gb|EFK51324.1| flagellar M-ring protein FliF [Escherichia coli MS 107-1]
          Length = 548

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 116/555 (20%), Positives = 222/555 (40%), Gaps = 40/555 (7%)

Query: 13  SGTSLGRTRILILASVILVPIM-LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
                   R  ++A V L       + +  +  +  Y +LY + E   V++I   L    
Sbjct: 16  RLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEK 75

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + +RI      I VP   + K R+ LAA+G+  +   SGYEL DK    G + F+Q +  
Sbjct: 76  LTYRIDPQSGQILVPEEALSKTRMTLAAKGV-QAILPSGYELMDKDEVLGSSQFVQNVRY 134

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA--INPSVYKSA 188
            R+LEGE+A++I S+  + +ARVH+ + +  SF      + +ASV++R            
Sbjct: 135 KRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDEPQNSASVVVRMHYGAKLNMDQV 194

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMN 244
            AI HLV+ ++P L    V+V+D  G LLT      E       K   I++ IQ +   +
Sbjct: 195 NAIVHLVSGSIPGLHASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRAS 254

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L + +G  N+R +V+ +L++ T    +  Y       +  R               
Sbjct: 255 VANVLDSLVGTGNYRVSVMPDLDLSTIDETQEHY---GDAPKINREESVLDSDTNQVAMG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLEN-----TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 N P V+  ++             +   E + +Y  +       H  + ++RL++
Sbjct: 312 VPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNV 371

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A +        ++  +++ A GI+++RGD +T++ ++F+   + 
Sbjct: 372 AVVLNQNA-------PALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVVP 424

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               + +   D +       +  +   +  LL+ F  +  + +      A       +++
Sbjct: 425 VEPVIPLWKDDSVLAW----VRLIGCGLLALLLLFFVVRPVMKRLTAVRAPVITPEPEAV 480

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P                      N D+ S   +      S   +     L  +   + 
Sbjct: 481 SEPWIAMPEEE------------CKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDT 528

Query: 540 ERFAKILRKWARSEI 554
           +R A++LR+W  S  
Sbjct: 529 DRVAEVLRQWITSNE 543


>gi|315638805|ref|ZP_07893977.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21]
 gi|315481023|gb|EFU71655.1| flagellar M-ring protein FliF [Campylobacter upsaliensis JV21]
          Length = 564

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/574 (20%), Positives = 230/574 (40%), Gaps = 26/574 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP----HYDNLYVKLE 56
           M   + LLQ  +   +L R + +++A+ I+V +   +    F N P     Y  L     
Sbjct: 5   MDFKNMLLQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRNGPAGSNGYVPLIENAN 64

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            S    I   L +  + +R+ +  S+I VP   V + ++ +A++GL   +   G+E+FDK
Sbjct: 65  PSTAGAIVTRLEQNGVPYRLENE-STILVPQDQVNRQKMFIASEGLIKDN-RVGFEVFDK 122

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TS  +++   RAL+GEIAR I+++  I +A V + +P    F +    PTASV 
Sbjct: 123 -QIFGATSAEEKVRAQRALQGEIARIIETLEPIRSASVILALPKESVFTERQIPPTASVT 181

Query: 177 IRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSI 233
           I   +      K  + ++++VAA+VP L   +V + D  G  L   +     +L   +  
Sbjct: 182 INIKDGFRLTRKQIDGVKNIVAASVPRLTKENVKISDQNGNTLDEQQLESGEVLAMQIRY 241

Query: 234 VQAIQHEIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  + E+E  I  +LA F G  D  + +V  E +   Q+ +  +YDP++ V     L++
Sbjct: 242 KRDSERELEEKIINSLAPFAGGRDKLQVSVNIEYDFSKQESKSEIYDPNTVVRSEQTLNE 301

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +    +  + +       N+  V          +++  K +  +N EI+     T     
Sbjct: 302 EKTGRKDPEIQGVPGAVSNIGPVEGL--ANNGVIDSYKKNQVTTNNEISKTITNTQKSFG 359

Query: 353 KLERLSIAVVVNKGR--LTEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
              R+S AV ++     + +  G   S       + L  +  IV      N+ RGD++ +
Sbjct: 360 VPLRISAAVTIDGKYEDVVDENGEVKSEYVPLPQAQLNGVESIVRNTINFNAARGDSVVV 419

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            ++ F    +     V+  +     R     I  + + +  +L+ F     +        
Sbjct: 420 QNLPFYRESIKVESKVKTFY----GRFIEPFIPPVKYFIAAILLFFFYKKVIAPFTQKML 475

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +     +     P          +   N A     + +       +  I         
Sbjct: 476 --EDVAAQEEAQQGPNAIIDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQ---YDVLL 530

Query: 529 LRLLHMIEINEERFAKILRKWARSEIEDRYTQHI 562
            +L  ++    E  A +L+   +++ +    + I
Sbjct: 531 EKLRALVSDKSEEIAALLQNLIQNDSDFSENKDI 564


>gi|283784015|ref|YP_003363880.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168]
 gi|282947469|emb|CBG87016.1| lateral flagellar M-ring protein [Citrobacter rodentium ICC168]
          Length = 554

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/572 (19%), Positives = 216/572 (37%), Gaps = 41/572 (7%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I      F      L   R  +L +   V     + +  + ++  Y +LY + E  
Sbjct: 1   MNELIKKLTHSFPAFAFRLDGNRRWMLLAAAAVAATAIIVSLLWNSNHGYVSLYGRQENL 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
            V++I   L    +++RI      I VP   + K R+ LAA+G+  +   +GYEL DK  
Sbjct: 61  PVSQIVTVLDGEKLEYRIDPQSGQILVPEEALSKTRMALAAKGV-QALLPNGYELMDKDE 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASV 175
             G + F+Q I   R+LEGE+A++I ++  + +ARVH+ + +  SF    +     +  V
Sbjct: 120 VLGSSQFVQNIRYKRSLEGELAQSIMTLDAVESARVHLALNEESSFVVSDRPQNSASVVV 179

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSL 231
            +            AI HLV+ ++P L    V+V+D  G LLT              K  
Sbjct: 180 RLHYGAKLDMDQVNAIVHLVSGSIPGLKATQVSVVDQAGNLLTDGTGAGEAVAATTRKHD 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            I+Q IQ +   ++   L + +G  N+R +V+ +L++         Y       +  R  
Sbjct: 240 QILQDIQDKTRASVANVLDSLVGPGNYRISVMPDLDLSDIDETREHY---GNEPKVNREE 296

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK---------KEEQSNYEINT 342
                              N P V+  +V    S    +           E + +Y  + 
Sbjct: 297 NVQDSDTNQIAMGIPGSLSNRPPVAPNQVTNNASATTAESNPPQALSKHSESKRDYSYDR 356

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
                 +  + ++RL +AVV+N+          A +        ++  +++ A GI+++R
Sbjct: 357 SVQHIQYPGFTVKRLKVAVVLNQEA-------PALKNWTPEQTRQLTDLLNNAAGIDTQR 409

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           GD ++++ + F+  +      + +   + +          +   +  LL+    +  + +
Sbjct: 410 GDNLSLSLLRFVPPKTPVEPVIPLWKDESVLAW----ARMIGCGLLALLLLLFVVRPMMK 465

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
                      +   +   P                   D  + ++ S   +      S 
Sbjct: 466 RLTAVRQSLPALEKVAASVPAIEPQFAAAED--------DRKSIELPSFPGDDSLPPQSS 517

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             +     L  +   + +R A++LR+W  S  
Sbjct: 518 GLEVKLEFLQKLAMSDTDRVAEVLRQWITSNE 549


>gi|182412248|ref|YP_001817314.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1]
 gi|177839462|gb|ACB73714.1| flagellar M-ring protein FliF [Opitutus terrae PB90-1]
          Length = 530

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/515 (23%), Positives = 206/515 (40%), Gaps = 16/515 (3%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +   L    +    LG  + + L    L  +   +    +   P Y  LY +L   D   
Sbjct: 1   MKKFLQSLLELWKQLGLNQRVSLVVAALAVVAGLITVVLWSRRPDYQLLYARLSEKDAAS 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L   NI   ++  G+++ VPS  V K R+ LA++GLP S    G+E+FDK   FGL
Sbjct: 61  IIGQLQTQNIPHIVTAGGTAVQVPSDQVYKLRMDLASKGLP-SGDGVGFEIFDKGQ-FGL 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181
           + F+Q    +RA++GE+ARTI  + G+ AARV IV P+        + + TASV +    
Sbjct: 119 SDFVQRTNYLRAVQGELARTIMQLQGVRAARVMIVQPENRLLLTDQSVKSTASVFVDVGG 178

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAI 237
                    AIRHLVA AV  L    V V+D+ G +L+     +         +   Q +
Sbjct: 179 KRLETDQVNAIRHLVANAVQGLAPDQVAVVDNRGHVLSEELKQDPTLGTASSQIRYRQQV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           +      +   LAA +G  N    V AE++ +   I E  +DP+ +V R+  +++D   S
Sbjct: 239 EDYFAKKVETMLAAVIGPGNAVVRVSAEIDTEAVAITEERFDPEGQVVRTQTVTEDTSSS 298

Query: 298 -ETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            E+      V V  N+P      +   P S     +K   + YEIN  ++ TT +   ++
Sbjct: 299 AESRSAGGVVGVSANVPEKNPGTEAARPVSNTEQSRKNRSTTYEINRTTLNTTRNPGSVK 358

Query: 356 RLSIAVVVNKG---RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT----ITI 408
            L+ AV V                 Q +    L  + ++V  A G+    G +    +++
Sbjct: 359 NLTAAVFVAPRLAAPAAAGAAPGEPQRRSAEELNALRQLVVNALGLKIPAGQSLDTVVSL 418

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
               F   +   +    +   +            +  +    +         R+      
Sbjct: 419 QETPFQSAEEIPAQIAAIEQENRWQGWIEAGSRWIAVVAAAAVFLVFWRMLRRQKPEPVP 478

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
            +   +  ++     P S+ VT  L+        +
Sbjct: 479 IEVLSLSPEAATRSLPTSNGVTPDLLNELIRQKPA 513


>gi|157147120|ref|YP_001454439.1| flagellar MS-ring protein [Citrobacter koseri ATCC BAA-895]
 gi|157084325|gb|ABV14003.1| hypothetical protein CKO_02897 [Citrobacter koseri ATCC BAA-895]
          Length = 540

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 117/557 (21%), Positives = 215/557 (38%), Gaps = 47/557 (8%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           +A V  V +   +    +  +  Y  LY   E   V+++   L   NI +RI+ +   I 
Sbjct: 1   MAIVGGVVLAAAIILSLWNRNQGYVALYGSQEHLPVSQVVDVLGAENIAYRINPDNGQIL 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V  S + +AR+ LAA+G+ S+++  GYEL DK    G + F+Q +   R+LEGE+A++I 
Sbjct: 61  VSESKLPQARMALAAKGI-SAATPDGYELMDKEEMLGSSQFIQNVRYKRSLEGELAKSIM 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPN 201
           ++  +  ARVH+ + +  SF       +++ +   +        +   ++  LVA +VP 
Sbjct: 120 ALDPVENARVHLGLNESSSFVLTNKPTSSASVMVQLHYGRKLDEQQVASVIQLVAGSVPG 179

Query: 202 LDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           +  G V V+D +G LL+      +           ++Q I+ +   NI   L + +G  N
Sbjct: 180 MQPGAVRVVDQSGNLLSDGIEGPDGGMTSKRMGDDVMQRIREDTTKNITSLLTSLVGPGN 239

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
           FR +V   +++   +  +       K  R        + +             N P    
Sbjct: 240 FRISVAPTVDLSRVEETQERL---GKDPRVSDEQLSQENTTNEMAFGIPGSLSNRPVNPT 296

Query: 318 RKVPLPRSLEN------------------TDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
            + P   +  N                  + + +EQ  Y  +       H  YKLE+LS+
Sbjct: 297 PQTPANPAEGNPPAENAANAANNTDPRSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLSV 356

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           AVV+N+          A        L  + ++V +A GI   RGD +T+  + F      
Sbjct: 357 AVVLNQAA-------PALAKITPEQLTSMTRLVESAAGIEKARGDALTLDVLTFTAPADD 409

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
               ++      +          L+ L+  L         ++R    D         K  
Sbjct: 410 VMPDLKWWQDPSMQYWGQNGGIGLLALLTLLF---GVRPLVQRFGRRDPITLDGEATKKE 466

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           L  P     +      + + A  ++N+D+            S   +     L  + +   
Sbjct: 467 LEAPDNGVVMNDDEFASLSKAAFNNNEDLLPP--------QSSGLEAKVEFLQLLAQSET 518

Query: 540 ERFAKILRKWARSEIED 556
           ER A++L++W  S    
Sbjct: 519 ERVAEVLKQWINSNDRS 535


>gi|186896782|ref|YP_001873894.1| flagellar MS-ring protein [Yersinia pseudotuberculosis PB1/+]
 gi|186699808|gb|ACC90437.1| flagellar M-ring protein FliF [Yersinia pseudotuberculosis PB1/+]
          Length = 546

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 123/559 (22%), Positives = 231/559 (41%), Gaps = 27/559 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +LD++ Q       LG     IL S + + +   +    + +S  Y  L+   E   + +
Sbjct: 1   MLDKIKQKLSP-GQLGENTKTILMSAVALLVTAAIIFSLWRSSQGYTALFGSQENIPITQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L    I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK +  G 
Sbjct: 60  VVEVLEGEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPIGYELMDKESMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRA-- 179
           + F+Q +   R+LEGE+A+++ ++S +  ARVH+ M +  SF     A  +ASV++R   
Sbjct: 119 SQFIQNVRYKRSLEGELAQSMMALSAVEYARVHLGMSEASSFAISNHADNSASVVLRLRY 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQTLSTEQVGAIVQLVAGSIPGMKPANVRVVDQHGELLSQAYQANSEGVPSVKSGTELAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E NI   L + +G +N+R +V  +L+M   +     Y PD ++      +   +
Sbjct: 239 YLQSTTEKNIANLLNSVIGANNYRISVSTQLDMSRIEETAEHYGPDPRIND---ENIQQE 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            S             N P    +    P ++    + + Q  Y  +       +  YKLE
Sbjct: 296 NSNDDMAMGIPGSLSNQPIPQSQAGQTPAAV---SRSQAQRKYIYDRNIRHVRYPGYKLE 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AVV+NK            +        E+ +++  A GI+ +RGD++TI  M F  
Sbjct: 353 KMTVAVVLNKSL-------PVLEQWTPEQQEELKRLIEDAAGIDVKRGDSLTINMMAFAV 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             L +   +         R    +   L+ L+  L         ++R             
Sbjct: 406 PTLIDEPVMPWWQEPSTFRWAELLGIGLLSLLVLLF---GVRPLMKRYSRKGSENLPLAI 462

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             +                 +     ++ +      S +L  + +   +K     L  + 
Sbjct: 463 SSASADEALDHVDTGVDGAESSPRTENAFSASSLWKSDDLPEQGSGLETK--IAHLQQLA 520

Query: 536 EINEERFAKILRKWARSEI 554
           +   ER A+++++W  S  
Sbjct: 521 QSETERTAEVIKQWINSNE 539


>gi|254299704|ref|ZP_04967153.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
 gi|157809299|gb|EDO86469.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 406e]
          Length = 532

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 105/517 (20%), Positives = 201/517 (38%), Gaps = 20/517 (3%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
               +  +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA
Sbjct: 28  YMRYDQANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAA 87

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ + ++  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ + 
Sbjct: 88  RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIA 146

Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                       +  +  + ++       +   A+ +LVA +VPNL    V+V+D  G  
Sbjct: 147 KSSSFVMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAF 206

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           L+A       L  +  I    + ++  N+   LA  LG+ NFR +V A +N D  +    
Sbjct: 207 LSARVDLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE 266

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +    KV          +++             N P         P++   T +     
Sbjct: 267 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASEPQADGGTQRAATTR 321

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            +  +           +L++LS+AVV+N          +  +      L  I++I+ +  
Sbjct: 322 QFAYDRNITQIKRGRGQLKKLSVAVVLNNAVSP-----AKGKPWSPEQLRRIDEILRSGL 376

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+ +RGD + ++S+DF                D L +    +  AL  L G L +    
Sbjct: 377 GIDKQRGDQLIVSSLDFAAPAAAE---PWWKERDTLEQGGWYLTYALAALFGYLALARPM 433

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  L++               S L  P    A       +D     ++   +        
Sbjct: 434 LRMLQQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPP 493

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       +     L  + E   ER A+++++W R++
Sbjct: 494 AD---SGVEVLIDHLRSLSEKEPERVAEVVKQWIRND 527


>gi|331269314|ref|YP_004395806.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925]
 gi|329125864|gb|AEB75809.1| flagellar M-ring protein FliF [Clostridium botulinum BKT015925]
          Length = 524

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 215/567 (37%), Gaps = 57/567 (10%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  I +Q  +  +    L + + +  + ++L  I   +     +N+  Y  LY  ++ +D
Sbjct: 1   MDKIKEQFKKLVEKFKELSKIKKIAFSVLVLGIITGIIYLVISLNTTKYAVLYKDMDPND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L++  I++++ +N  SI VP     + R+ LA Q    ++ + GYE+ D  ++
Sbjct: 61  AQTVMAKLADKKIEYKVENN--SIRVPEDKAAELRMELAPQ---LTNGSKGYEILDNGDT 115

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
           FG+T   +E+   RALEGE+AR I+S+  +  A+V +VM   G+F K     +ASV +  
Sbjct: 116 FGMTDKERELKYKRALEGELARDIKSLPEVKDAKVLLVMQQEGNFFKQDDPGSASVTLEF 175

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLTA-------NEMERNIL 227
                   +  +AI  LV+ +V NL   +   V V++   + L+        N+   ++ 
Sbjct: 176 ETGKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVT 235

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K  S  + ++ E    I   L    G    ++AV  +++ D  +    ++DP++     
Sbjct: 236 EKQESYKKNLEKEYVKKIMNILTPKYGDG-VKAAVNVDVDFDASEKTSTLWDPNN----- 289

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
           +  S++ ++   +      +    + +              +  ++   NYE+       
Sbjct: 290 VVRSEETEKDTDNSKGGKTSA-GPVDNNMSNTYNAKDQNGTSTHEKTTKNYEVGKVEQKV 348

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                K++++S +V +N            D+        +IN +V+ A   +  RGD ++
Sbjct: 349 VGAPGKIKKISASVTIN------------DENLSPVDKDKINSLVAGAISYDESRGDIVS 396

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +  M F E     +        +       + I   V      L    G+ AL R     
Sbjct: 397 VEGMKFNEVNEAAAAEEAKKQAEEQKAKQKSFIYKCVGGAVAALAVIAGIVALIRKRRKK 456

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
           +    E   + I      +                       +      +      +   
Sbjct: 457 NKVDEEEEIEGIDMLIDDNVE--------------------PNEPLKPINFDEENENTHV 496

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
           +  +        E+  +I++ W   + 
Sbjct: 497 EKEIKKYASEKPEQVVEIIKAWMAEDE 523


>gi|213028767|ref|ZP_03343214.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 377

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/359 (27%), Positives = 163/359 (45%), Gaps = 29/359 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
            +  +P Y  L+  L   D   I   L++ NI +R ++   +I VP+  V + R+ LA Q
Sbjct: 15  LWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQ 74

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP   +  G+EL D+   FG++ F +++   RALEGE+ARTI+++  + +ARVH+ MP 
Sbjct: 75  GLPKGGA-VGFELLDQE-KFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPK 132

Query: 161 MGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
              F +    P+ASV +              A+ HLV++AV  L  G+VT++D +G LLT
Sbjct: 133 PSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGHLLT 192

Query: 219 ANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
            +    R++    L     ++  I+  I   L+  +G  N  + V A+L+   ++  E  
Sbjct: 193 QSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKEQTEEH 252

Query: 278 YDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------------------- 313
           Y P+    ++   S+    SE      P        N P                     
Sbjct: 253 YSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTNQQNAQNT 312

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
             +        +     ++ E SNYE++     T  +   +ERLS+AVVVN   L +  
Sbjct: 313 PQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGK 371


>gi|304392498|ref|ZP_07374438.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130]
 gi|303295128|gb|EFL89488.1| flagellar M-ring protein FliF [Ahrensia sp. R2A130]
          Length = 535

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 181/556 (32%), Positives = 294/556 (52%), Gaps = 41/556 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +     + + +   LG  R+ I+A   +  +     + +F+  P ++ LYV L   D+N
Sbjct: 11  TVSQAANRIWANLLQLGGRRLAIMAIAAMATMGTVGLSAWFLAQPTFETLYVGLARDDIN 70

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           RI  ALSEA I + +S +G+S+ V +    +AR  LA +GLP SS  SGYELFD + S G
Sbjct: 71  RIGPALSEAGIGYDVSSDGTSVLVQAGQAARARSILAERGLPRSSG-SGYELFDNLGSLG 129

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQE+TRVRALEGEIAR+++SI GI  ARVHIV PD  SF     + +ASV+I++  
Sbjct: 130 LTSFMQEVTRVRALEGEIARSVRSIEGIQGARVHIVQPDRSSFSARNRQASASVLIQSNG 189

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHE 240
             + + A+A+RHLVAAAVP L +G+VTVLDS+G++L + +    +    +L + + +++ 
Sbjct: 190 RDIDRVAKAVRHLVAAAVPQLAVGNVTVLDSSGQVLASGDEPASSTADGALGMQRLVENR 249

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +  NI + L   LG  NFR AV A L+ D +   E +YDP+S+VERSI++ +      +S
Sbjct: 250 LSENIARVLTPQLGASNFRVAVHAVLDTDQRTTSETIYDPESRVERSIKVVRTQDTDTSS 309

Query: 301 QPESAVTVEQNMPHVSDRKVP-LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           Q     TVEQ++P     +    P S   ++++EE +NYE+++K I++  + Y + +L+ 
Sbjct: 310 QGGQTTTVEQDIPEEQPAQANAGPSSNRESERREETTNYEMSSKRISSVRNGYSVSKLTA 369

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +VVVN   L                L  +     AA G+++ RGD I +++++F+     
Sbjct: 370 SVVVNASALGAE---------PAVRLEALRASTQAAAGVDAGRGDVIDVSAVEFV-TAAD 419

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            + T     +   +    +V+ AL FL+  +LV    +  L        +    V G+  
Sbjct: 420 LAATTSSPLLLQATAQLGSVVKALAFLIALVLVLRFAIKPLVAAAASALSPPQSVEGEGA 479

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           ++ P  ++ +   + P  + A                             RL  +++ + 
Sbjct: 480 IAGPSNNTRLAGPMGPPPSAA----------------------------DRLAALVDQDS 511

Query: 540 ERFAKILRKWARSEIE 555
           ER A++LR W R+  E
Sbjct: 512 ERAAEVLRSWVRAGEE 527


>gi|254445735|ref|ZP_05059211.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235]
 gi|198260043|gb|EDY84351.1| flagellar M-ring protein FliF [Verrucomicrobiae bacterium DG1235]
          Length = 525

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 122/503 (24%), Positives = 227/503 (45%), Gaps = 17/503 (3%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            QF +   SLG  + + L     + ++  +    +   P    LY KL   +  +I   L
Sbjct: 3   NQFKEIWQSLGANQRISLILASGLVVLAMIGMMIWAAQPDMQLLYGKLSAEEAGKIVAKL 62

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  + F     G+SI V +S V + R+ LA +G+P+  S  G+ELFD+  SFG++ F+Q
Sbjct: 63  EQKGVAFETGSGGNSIYVEASQVHRIRMELATEGIPAGGSGPGFELFDE-GSFGISDFVQ 121

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-KIGARPTASVMIRAINPSVYK 186
               +RA++GE+ARTI    G+ +ARV +VMP+      + G     + +          
Sbjct: 122 RTNFLRAVQGELARTISQFDGVESARVMVVMPENRLLASREGQDRPTASVFVDGGGLSTG 181

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLSIVQAIQHEIE 242
           +  +IRHLVA A+  L + DV V+DS G +L+     + +   I    +   +++++   
Sbjct: 182 TVNSIRHLVANAIQRLSINDVVVVDSMGTVLSEELRSDGIGSGISNDVIKYRKSLENYFT 241

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA--QRSETS 300
             +   L   LG +     V  ++   + Q  E  +DP+S+V RS    +D+  +R  + 
Sbjct: 242 GKVQSMLDRVLGPNQSEVRVAVDIETASVQTTEKTFDPESQVARSTVSDEDSQVERETSG 301

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS--NYEINTKSIATTHDNYKLERLS 358
           +   A  V  N P           +L+  + K +    N+EIN + +++  +   ++RL+
Sbjct: 302 EGAGATGVSSNTPAAGGAGQTAFSTLKEREDKNKTRTENFEINERIVSSVQNPGSIKRLT 361

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG----DTITITSMDFL 414
            +++V K R+ +V G+     +    L E++ IV  A GI    G    D +T+  M F 
Sbjct: 362 ASLLVAK-RMEDVRGQMNFVDRTPEQLEELSDIVVTALGIQLAPGQTAADFVTVKEMAFA 420

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
            +   N G  ++   D   + +  +    +  V  + V    +  L+R      + +   
Sbjct: 421 VDPFENHG--ELLKEDATIQRYIELGKNGIGAVLGIGVIIFFMQMLKRYKPEKMSIEVLQ 478

Query: 475 GGKSILSPPPISSAVTTGLMPND 497
             + + +     ++V T  M N+
Sbjct: 479 PDQMLQTRKMEDTSVVTPEMLNE 501


>gi|229544393|ref|ZP_04433451.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1]
 gi|229324878|gb|EEN90555.1| flagellar M-ring protein FliF [Bacillus coagulans 36D1]
          Length = 529

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 107/569 (18%), Positives = 205/569 (36%), Gaps = 56/569 (9%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   +            S  + +  I  S + + ++L     +F+    Y  LY  L+VS
Sbjct: 1   MNEKLKQSFQNLKGFWKSRSKKQKTIGISAVALMLVLAAGITYFMTKTKYAPLYSGLDVS 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +   I   L +  +  +I+D G +I VP   V   ++ LAA+GLP + S   Y  F +  
Sbjct: 61  ETGSIKDELDQEGVPSKITDGGKTIEVPEDQVDDLKVTLAAKGLPKTGS-IDYSFFSQNA 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMI 177
            FG+T     + ++ A++ E+   I+ + G+  A+V I +P+   F     A+ +ASV++
Sbjct: 120 KFGMTDNEFNVVKLDAMQTELENLIEQMDGVEKAKVMINLPNQSVFVADSQAKASASVVL 179

Query: 178 RAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKSLSI 233
                        +A+ +LV+ +VPNL   ++ +++   +   L ++    N   +  +I
Sbjct: 180 TLKPGYELDQNQIKAVYNLVSKSVPNLPTDNIVIMNQNFEYYDLNSSNSSGNAYTQQQAI 239

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-DSKVERSIRLSK 292
            + I+ +I+  +   L+  +G       V A+++   ++  E + +P D    + I +S 
Sbjct: 240 KKQIERDIQQQVQTMLSTLMGAGKAVVTVTADIDFTQEKREEDLVEPVDKTNMKGIEISA 299

Query: 293 DAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
              +       +A          V    V          K  +  NYE+N      T   
Sbjct: 300 KKIQETYQGTGAAAGTPSGSTDSVGSSYVSGSNGNGTYSKTSDTINYEVNRIKRKITESP 359

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GINSRRGD 404
           YK+  L I V+V           S    ++    + ++ IV  +          N    D
Sbjct: 360 YKIRDLGIEVMVEPPV--RTKRSSLPASRLKDIKSMLSTIVRTSIDKSSGTRLTNQTVAD 417

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I ++   F  N    +    + +               +     L++  L    +R   
Sbjct: 418 KIAVSVQPFAANAPEKAKKASIPWW-----------VYAIGGGLLLVIAGLIFFMIRNRR 466

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                 + E+  ++   P P            D  A                        
Sbjct: 467 RAASEAEEEMAEETPEKPAPPRIPDVNEEQETDASA------------------------ 502

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
                +L  M +   + FAK+LR W   E
Sbjct: 503 --RRKQLEKMAKEKPDEFAKLLRSWLSEE 529


>gi|89069804|ref|ZP_01157139.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
 gi|89044605|gb|EAR50721.1| putative flagellar M-ring protein [Oceanicola granulosus HTCC2516]
          Length = 514

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 118/523 (22%), Positives = 211/523 (40%), Gaps = 17/523 (3%)

Query: 31  VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMV 90
           V ++  +       +     LY  L+ +    +  AL      + +  +G  I V S+  
Sbjct: 2   VVVLAVLFVGRSTPTRQMALLYAGLDAAAAGEVVTALDTRGEVYEVRGSG--IYVESARR 59

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
              R+ LA +GLPS  +  GYEL D ++ FG TS M +    RA EGE+ARTIQS  G+ 
Sbjct: 60  DLLRMTLAGEGLPSGGAQ-GYELLDSLSGFGTTSQMFDAAYWRAKEGELARTIQSSPGVR 118

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           A RVH+ +P    F++ G    A  +  A        A+A RHLVA+AV  L   DV V+
Sbjct: 119 AVRVHVSVPANRGFQREGQPAAAVTVTSAGGGLSAAQAKAFRHLVASAVTGLAPDDVAVI 178

Query: 211 DSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
           D +G +             + +     +  +   + + L A +G  N    +  E   +T
Sbjct: 179 DESGLV------AAADDSSAPAAQGERERLMRERLQRLLEARVGHGNAVVELNIETETET 232

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +QIRE  +DP+ +V  +  +S+ ++ +       AVTV  N+P           S     
Sbjct: 233 EQIRERQFDPEGRVAIAEDVSERSESASGGT--GAVTVASNLPDGDA---AGGGSESQAS 287

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           +  + +NYE++            + R+++AV++N     +  G      + +  LA +  
Sbjct: 288 ETRQLTNYEVSQVEREVLRAPGAVRRITVAVLINDPVEVD-SGVETATPRSEEELAVLRD 346

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V++A G +  RGD IT+ SM F    +  +  + V+           ++   V  V  L
Sbjct: 347 LVASAVGFDEARGDVITLRSMPFEPPAVAGTEALDVA-APEPPLDVMWLVQLAVMAVVAL 405

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           ++    +  +          +        + P          L       +  S    F 
Sbjct: 406 VLGLFVIRPILTGARPAALPERGPPPALTMEPSARGEPGLPALRETQAGEVAMSQLPTFD 465

Query: 511 HSRNLQSRI-NSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
            +   ++       +     RL  +++  ++   +IL+ W   
Sbjct: 466 MAEFDRAPPQEDLSTLDPVSRLRRLMDERQDETLQILQSWMEE 508


>gi|167725912|ref|ZP_02409148.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98]
 gi|167905072|ref|ZP_02492277.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177]
 gi|125657201|gb|ABN48689.1| flagella biosynthesis/type III secretory pathway lipoprotein
           [Burkholderia pseudomallei]
          Length = 531

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 106/517 (20%), Positives = 201/517 (38%), Gaps = 20/517 (3%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
               +  +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA
Sbjct: 27  YMRYDQANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAA 86

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ + ++  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ + 
Sbjct: 87  RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIA 145

Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                       +  +  + ++       +   A+ +LVA +VPNL    V+V+D  G  
Sbjct: 146 KSSSFVMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAF 205

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           L+A       L  +  I    + ++  N+   LA  LG+ NFR +V A +N D  +    
Sbjct: 206 LSARVDLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE 265

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +    KV          +++             N P         P++   T +     
Sbjct: 266 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASEPQADGGTQRAATTR 320

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            +  +           +LE+LS+AVV+N          +  +      L  I++I+ +  
Sbjct: 321 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----AKGKPWSPEQLRRIDEILRSGL 375

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+ +RGD + ++S+DF                D L +    +  AL  L G L +    
Sbjct: 376 GIDKQRGDQLIVSSLDFAAPAAAE---PWWKERDTLEQGGWYLTYALAALFGYLALARPM 432

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  L++               S L  P    A       +D     ++   +        
Sbjct: 433 LRMLQQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPP 492

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       +     L  + E   ER A+++++W R++
Sbjct: 493 AD---SGVEVLIDHLRSLSEKEPERVAEVVKQWIRND 526


>gi|221639466|ref|YP_002525728.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131]
 gi|221160247|gb|ACM01227.1| Flagellar M-ring protein [Rhodobacter sphaeroides KD131]
          Length = 561

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 116/566 (20%), Positives = 218/566 (38%), Gaps = 33/566 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  +L   +        R  + A +IL   +L +A    +  P    LY  L  ++  R+
Sbjct: 12  MRGMLDQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 71

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L+   I   I +    ++VP +   +AR+ LAAQGLP      G  L   +   G +
Sbjct: 72  IDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLP-QGLPDGNALLSDLP-MGTS 129

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ +   
Sbjct: 130 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 189

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239
                  EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     ++ 
Sbjct: 190 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 249

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                I   L    G  N    V  +++   Q+IRE   DPD     + +     + +  
Sbjct: 250 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 307

Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            Q         N P                   +   +  +    N+E++ K   T    
Sbjct: 308 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLPAT 367

Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
            ++ R+S AVVV                    ++  A++ ++  +A G ++ RGD +TIT
Sbjct: 368 ARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 427

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  FL+  +  +               A +      L    +V    +  +      +  
Sbjct: 428 AQPFLDTVVPEASG------WSAEPWLADLARQGFLLAALAVVALGVVRPIL-----NRV 476

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                     L     +  V  G   +D  A   + Q   + +    +R      ++  L
Sbjct: 477 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 532

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
            +  ++E +E R A  +R+   +E++
Sbjct: 533 VIRKLVEEDEGRIATTIRQMIAAELD 558


>gi|126442789|ref|YP_001061229.1| flagellar MS-ring protein [Burkholderia pseudomallei 668]
 gi|134280829|ref|ZP_01767539.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|254182909|ref|ZP_04889502.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
 gi|126222280|gb|ABN85785.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 668]
 gi|134247851|gb|EBA47935.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 305]
 gi|184213443|gb|EDU10486.1| flagellar M-ring protein FliF [Burkholderia pseudomallei 1655]
          Length = 532

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 106/517 (20%), Positives = 201/517 (38%), Gaps = 20/517 (3%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
               +  +Y  L+   E   ++ +   L    I +RI  +   + V  S V +AR+ LAA
Sbjct: 28  YMRYDQANYKPLFGAREPVQLDDVVSTLDAQRIPYRIHPDTGQVLVARSDVARARMTLAA 87

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ + ++  G E  D+ +  G + F+Q++   R LE E+A++I ++  +  ARVH+ + 
Sbjct: 88  RGVTAKAAP-GLEQIDQDDPLGTSQFVQDVRFRRGLESELAQSIATLEPVERARVHLSIA 146

Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                       +  +  + ++       +   A+ +LVA +VPNL    V+V+D  G  
Sbjct: 147 KSSSFVMMDGDKSAASVVLTLKPGRRLAKEQIAAVINLVAGSVPNLAPAKVSVVDQHGAF 206

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           L+A       L  +  I    + ++  N+   LA  LG+ NFR +V A +N D  +    
Sbjct: 207 LSARVDLDGDLTGTDEIAARFREDVTRNVEDLLAPSLGLGNFRVSVTALVNNDRVEETRE 266

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +    KV          +++             N P         P++   T +     
Sbjct: 267 QFGEAPKVMNEATR---NEQNRDRVALGVPGSLSNRPVDVP--ASEPQADGGTQRAATTR 321

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            +  +           +LE+LS+AVV+N          +  +      L  I++I+ +  
Sbjct: 322 QFAYDRNITQIKRGRGQLEKLSVAVVLNNAVSP-----AKGKPWSPEQLRRIDEILRSGL 376

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+ +RGD + ++S+DF                D L +    +  AL  L G L +    
Sbjct: 377 GIDKQRGDQLIVSSLDFAAPAAAE---PWWKERDTLEQGGWYLTYALAALFGYLALARPM 433

Query: 457 LHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ 516
           L  L++               S L  P    A       +D     ++   +        
Sbjct: 434 LRMLQQWVQHRYGAPAAAASASRLPAPEGGHAQAALPAADDARPPLAAMLPLLDDVELPP 493

Query: 517 SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       +     L  + E   ER A+++++W R++
Sbjct: 494 AD---SGVEVLIDHLRSLSEKEPERVAEVVKQWIRND 527


>gi|77463624|ref|YP_353128.1| flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388042|gb|ABA79227.1| Flagellar FliF M-ring protein [Rhodobacter sphaeroides 2.4.1]
          Length = 570

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 115/566 (20%), Positives = 219/566 (38%), Gaps = 33/566 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  +++  +        R  + A +IL   +L +A    +  P    LY  L  ++  R+
Sbjct: 21  MRGMVEQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 80

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L+   I   I +    ++VP +   +AR+ LAAQGLP      G  L   +   G +
Sbjct: 81  IDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLP-QGLPDGNALLSDLP-MGTS 138

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ +   
Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 198

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239
                  EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     ++ 
Sbjct: 199 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 258

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                I   L    G  N    V  +++   Q+IRE   DPD     + +     + +  
Sbjct: 259 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 316

Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            Q         N P                   +   +  +    N+E++ K   T    
Sbjct: 317 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKVETTLPAT 376

Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
            ++ R+S AVVV                    ++  A++ ++  +A G ++ RGD +TIT
Sbjct: 377 ARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 436

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  FL+  +  +               A +      L    +V    +  +      +  
Sbjct: 437 AQPFLDTVVPEASG------WSAEPWLADLARQGFLLAALAVVALGVVRPIL-----NRV 485

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                     L     +  V  G   +D  A   + Q   + +    +R      ++  L
Sbjct: 486 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 541

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
            +  ++E +E R A  +R+   +E++
Sbjct: 542 VIRKLVEEDEGRIATTIRQMIAAELD 567


>gi|167040330|ref|YP_001663315.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514]
 gi|300914414|ref|ZP_07131730.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561]
 gi|307724350|ref|YP_003904101.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513]
 gi|166854570|gb|ABY92979.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X514]
 gi|300889349|gb|EFK84495.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X561]
 gi|307581411|gb|ADN54810.1| flagellar M-ring protein FliF [Thermoanaerobacter sp. X513]
          Length = 503

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 206/561 (36%), Gaps = 73/561 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + + + L  + ++  +      + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L     I ++IS++G++I VP+    + R+ LA +G+P    +    +    NS 
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F        A     + 
Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ 235
           ++          + I   V+ +V  L   +VTV+D+ GK+LTA  +          ++ +
Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFTLQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q +++ ++   L    G  N        LN D +    I Y P   +        + +
Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++  +Q  S+     N P V+           +  + E   NYEIN    +      
Sbjct: 301 LKEKATGTQGGSSPGTASNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+E +SIAVVVN             Q   +S   +I  +V+ A G +S     +++  M 
Sbjct: 358 KIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAGGDSLV--QVSVQGMQ 402

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++         +          +  +   V+ +   LV   GL  +       +    
Sbjct: 403 FNQD---------LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               + + +  P                                  I+     +   ++ 
Sbjct: 454 TAEQEVLATVEPTYV-------------------------------IDFSDKDEKKKQIE 482

Query: 533 HMIEINEERFAKILRKWARSE 553
            +I+   +   +I+R W   E
Sbjct: 483 KLIKEKPDIVVQIIRTWLNEE 503


>gi|15895431|ref|NP_348780.1| flagellar MS-ring protein [Clostridium acetobutylicum ATCC 824]
 gi|15025155|gb|AAK80120.1|AE007716_9 Flagellar basal body M-ring protein FliF [Clostridium
           acetobutylicum ATCC 824]
 gi|325509577|gb|ADZ21213.1| flagellar MS-ring protein [Clostridium acetobutylicum EA 2018]
          Length = 544

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/573 (18%), Positives = 210/573 (36%), Gaps = 54/573 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L+ L         + + + ++   +++  I   +          Y  L+ KL+ SD   
Sbjct: 4   LLESLKNLRNKWGEISKRKKIVFLIIVVAIIASLVVFLVSTTRTKYAVLFSKLDSSDAAT 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFG 121
           +   L    I  +   + ++I VP++ V K R+  A         ++G+ELFD   N FG
Sbjct: 64  VISKLDSDKIAHKEDSSTNTIYVPAADVDKLRLQYATN---LKGGSTGFELFDNSANKFG 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T     +   RAL+GE+ RTI++   I  ARVH+VM +  +F K     +ASV ++   
Sbjct: 121 TTDSEFNVEYQRALQGELERTIKNFDEISDARVHLVMSEDSAFVKDSTPASASVTVKMKA 180

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----------ANEMERNILGK 229
                    +AI  LV+ +V NL   +V V+D    LL+           +    +    
Sbjct: 181 GETLSKDQVKAIISLVSGSVKNLPKENVQVVDDKMALLSKDLYNSKGKDDSSDTTDSAEN 240

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-----PDSKV 284
              +   ++ E+E     +L +  G    +  + A+LN D Q+     Y      P+   
Sbjct: 241 RNKMESNVESELEKKALDSLESIYGKGKVKVKINADLNFDAQETNSQTYYDNKGNPNDPK 300

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
             +I      + + +    ++ +   N  + +   +    S   +  K+  +NY++++++
Sbjct: 301 NPTIVSQHSQESTNSQPQSTSSSPLDN--NTNSNTIANNNSNSTSSSKDVTTNYDVSSET 358

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
             T      + RL+I+V+V+                     + +  +VS A G N +RGD
Sbjct: 359 NKTVKAPGDVRRLTISVIVDGK-------------INGDTQSTLTNVVSNAVGYNQQRGD 405

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDIL---SRHFATVINALVFLVGTLLVTFLGLHALR 461
           TI++  + F       +        D     ++    +  A+   V  L +    +  +R
Sbjct: 406 TISVEGLPFDNTAETEAKKALKEMQDAQNAANKQKMYMAIAIGAGVLALAIITFVVIMIR 465

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           R                  +              N ++ +    +   +    +      
Sbjct: 466 RRKQ---------------AADEEEFDEDLDSTQNLDVVVGDEIKKSKTKFAPIDFEGEE 510

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                 +  +        E+   I++ W  +E 
Sbjct: 511 DEQTHIEKEIKKYASTKPEQVVDIVKAWLTNEE 543


>gi|254478876|ref|ZP_05092240.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM
           12653]
 gi|214035189|gb|EEB75899.1| flagellar M-ring protein FliF [Carboxydibrachium pacificum DSM
           12653]
          Length = 506

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/561 (18%), Positives = 197/561 (35%), Gaps = 67/561 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +I +   Q         + + + L  + ++  +      +  N P+Y  LY  L + D  
Sbjct: 4   SIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L     + +++SDNG++I VP+    + R+ LA +G+P    +    +    NS 
Sbjct: 64  IVVEKLKSEFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  ++ EI  ++++I G+  A V+IV+PD  +F        A     + 
Sbjct: 121 STTDQERRQKYLYFVQNEIQNSLKTIEGVQDAVVNIVVPDQNAFVLSNTTNQATAAVMLT 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235
           ++          + I   V+ +V  L   +VTV+DSTGK+LT              ++ +
Sbjct: 181 LKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q +++ ++   L    G  N        LN D +    I Y P   +        + +
Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++  +Q  S        P           +  + DK E   NYEIN           
Sbjct: 301 LKEKATGTQNGSPTGTASTTPPGGGALSTQSNNTSSYDKTETTINYEINQIKTTLVEAQG 360

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+E +S+AVVVNK                 S   +I  +V+ A G     G+ + ++   
Sbjct: 361 KIESISVAVVVNK-------------PLNASMQQQIADLVANAAG-----GNNVKVSVQG 402

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
              NQ           +      +   I A + + G L+   +     R+   +    + 
Sbjct: 403 IPFNQDLLKAMQAQKKVAQGMPLYLWGIIAALAVGGGLVAFLMIRR--RKTKEVIPPAEE 460

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           EV   +      + +                                      +   ++ 
Sbjct: 461 EVLATAEPVEEIVITE-----------------------------------KDEKKKQIE 485

Query: 533 HMIEINEERFAKILRKWARSE 553
            +I    +   +++R W   E
Sbjct: 486 KLIREKPDIVVQLIRTWLNEE 506


>gi|83589623|ref|YP_429632.1| flagellar MS-ring protein [Moorella thermoacetica ATCC 39073]
 gi|83572537|gb|ABC19089.1| flagellar M-ring protein FliF [Moorella thermoacetica ATCC 39073]
          Length = 524

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 115/549 (20%), Positives = 213/549 (38%), Gaps = 45/549 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + D   +       L   R   L +V L  ++       ++  P Y  L+  ++  D 
Sbjct: 1   MKVKDIFGKAKSFWQGLTPGRRSALVAVTLAALLAAGFLVQWLVRPQYAPLFTNMQQQDA 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             ++  L E  + +R++ +G++I VP   + + R+ LA+ G+ ++    G+ELFD+    
Sbjct: 61  AAVTAKLKEMKVPYRLTGDGTTIEVPKDQIYQLRLDLASAGVLNNG--QGFELFDQN-KL 117

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+T F + +   RAL+ E+ RTI ++  +  ARVH+V+P    F +    P+A+V+++  
Sbjct: 118 GMTDFERNLDYQRALQEELRRTIVTLDEVEDARVHLVIPQPSVFLQQQQPPSAAVVLKLK 177

Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL------GKSLS 232
                  +  + I  L+AA+VP L + ++ V+D  G +L+    +             + 
Sbjct: 178 PLARLKPEQVKGIMELIAASVPGLKLENIRVIDMYGNVLSDGVADSANAPLSQKQQTQME 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           I +  + ++E  +   L   LG     + V A+LN D Q+I +  +     +      S+
Sbjct: 238 IKRQFEKDLEQRLQSMLTQILGPGKAVAMVTADLNFDQQEINQTTWGKQGAL-----RSE 292

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           + +  + +    A  V     +       +  +  N +  +   NYE++     T     
Sbjct: 293 EIKTEQGTSNGGAGGVAGTAGNNGPGYPAVNPANGNYNTSDTVHNYELDKTDTHTIVAPG 352

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           ++ RLS AV VN                  +   +I +IVSAA G    RGD IT+TS+ 
Sbjct: 353 QVRRLSTAVAVNG-------------PVNAALNNQIQQIVSAAVGYQPARGDQITVTSLA 399

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  +          +      R    ++   V LV   L+  L +  LRR          
Sbjct: 400 FDNSLQQQMAADMAAQQQRQQRLRQYLLWGGVGLVSLALLVTLIVLILRRRRQ------- 452

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                               L     +              +L+ +      K    +L 
Sbjct: 453 ---------AALEEQMAAAALPAGVPVEPLVVEPVEPVEPADLEKQRQEAQRKAKLEQLQ 503

Query: 533 HMIEINEER 541
            +I    E 
Sbjct: 504 EIIRQRPED 512


>gi|238752878|ref|ZP_04614343.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
 gi|238708917|gb|EEQ01170.1| Flagellar M-ring protein [Yersinia rohdei ATCC 43380]
          Length = 541

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/562 (19%), Positives = 229/562 (40%), Gaps = 32/562 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L+++ Q   S T +   +  +L     + +   +    + +S  Y  L+   E   V +
Sbjct: 1   MLEKIKQKLSS-TKMDNNQKNLLMGAAAILVTGAIIFSLWRSSQGYTALFGSQENIPVAQ 59

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L +  I +RI+ +   + V  + +GKARI LAA+G+ +++   GYEL DK    G 
Sbjct: 60  MVEVLDQEAIAYRINPDNGQVLVAENQLGKARILLAAKGI-TATLPVGYELMDKETMLGS 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA 179
           + F+Q +   R+LEGE+A++I +++ +  ARVH+ M +  SF    +  +  +  + ++ 
Sbjct: 119 SQFIQSVRYKRSLEGELAQSIMALTAVDYARVHLGMSEASSFAISNRAESSASVVLRLKY 178

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQ 235
                 +   AI  LVA ++P +   +V V+D  G+LL+    AN      +     +  
Sbjct: 179 GQALKPEQVGAIVQLVAGSMPGIKAANVRVVDQHGELLSEAYQANSSGMPSVKSGADLAH 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +Q   E +I   L++ +G +N+R +V  +L++   +     Y P+    R    +   +
Sbjct: 239 YLQSTTEKSIANLLSSVVGANNYRISVATQLDLSRIEETLERYGPEP---RISDENIQQE 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            +             N P      +  P ++    + + Q  Y  +       H  +KL+
Sbjct: 296 NNNDDMAMGVPGSLSNQPVAQPGNMTAPTAV---SRSQAQRKYTYDRDIRHVRHPGFKLD 352

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           ++++AV++NK          A +      LAE+ +++  A GI+ +RGD++T+  + F  
Sbjct: 353 KMTVAVILNKSA-------PALENWAPEQLAELKRLIEDAAGIDVKRGDSLTLNMLAFTA 405

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
             +     +         R        +   + +LL    G+  L +     D +     
Sbjct: 406 PTVMEESVIPWWQDPTTFRW----AEIIGIGLLSLLFLLFGVRPLMKRLARRDQQLVNSA 461

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                    I    T      +     S      S   +          +     L  + 
Sbjct: 462 SAEESENAGIIETATDSSTSLEQTLSGS------SFQESDNLPPQGSGLETKISHLQKLA 515

Query: 536 EINEERFAKILRKWARSEIEDR 557
           +   ER A+++++W  +    +
Sbjct: 516 QSETERVAEVIKQWINNNERTK 537


>gi|153951308|ref|YP_001398635.1| flagellar MS-ring protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938754|gb|ABS43495.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 560

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/573 (19%), Positives = 221/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLYQIGQLYQNLTRKQRIVIATSIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   + + R+ +A++G    S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQIYRQRMFIASEGFIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++          
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNIKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV  A   ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGRYQDVVDENGDVKSEYVPLTKEELASVESIVKNAINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV                +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAVKKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|325526932|gb|EGD04395.1| flagellar MS-ring protein [Burkholderia sp. TJI49]
          Length = 367

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/321 (28%), Positives = 149/321 (46%), Gaps = 14/321 (4%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VPS+ V + R+ LAA G
Sbjct: 49  WSRAPDYRVLYSNLSDRDGGAIITALQQANVPYKFADAGGAILVPSNQVHETRLKLAAMG 108

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RTI+SI+ +  ARVH+ +P  
Sbjct: 109 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTIESINAVRGARVHLAIPKP 166

Query: 162 GSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
             F +    P+ASV +             +AI  +V++ VP++   +VT++D  G LLT 
Sbjct: 167 SVFVRDKEAPSASVFVDLYPGRVLDEGQVQAITRMVSSGVPDMSAKNVTIVDQDGNLLTQ 226

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
                 +    L  VQ ++   +  I+  LA   G  N RS V A+++    +     Y 
Sbjct: 227 PASASGLDASQLKYVQQVEQNTQKRIDAILAPIFGAGNARSQVSADIDFSRLEQTSENYG 286

Query: 280 PDSKVERSIRLSKDAQRSE---TSQPESAVTVEQNMPHVSDRKV-------PLPRSLENT 329
           P+   ++S   S+    S     S          N P                P++   +
Sbjct: 287 PNGSPQQSAIRSQQTSTSTELAQSGASGVPGALSNTPPQPASAPIVAGNGANAPQTTPVS 346

Query: 330 DKKEEQSNYEINTKSIATTHD 350
           D+K++ +NYE++         
Sbjct: 347 DRKDQTTNYELDKTIRHLEQP 367


>gi|119385376|ref|YP_916432.1| flagellar MS-ring protein [Paracoccus denitrificans PD1222]
 gi|119375143|gb|ABL70736.1| flagellar M-ring protein FliF [Paracoccus denitrificans PD1222]
          Length = 526

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 125/549 (22%), Positives = 225/549 (40%), Gaps = 29/549 (5%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           LL+           +  +LA+  L          +  + P    LY  L+      +  A
Sbjct: 5   LLKLQDYWRDRSTKQRAMLAAAFLFTFAAIAGLSWMASRPGMALLYSGLDPQQSGAVMAA 64

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           + ++ + + I   G SI V  S   + R+ LA +GLPS+   SGYE+ D ++ FG TS M
Sbjct: 65  VEKSGVPYEIR--GDSIWVAESRRDELRMTLAGEGLPSAGG-SGYEILDGMSGFGTTSQM 121

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI ++  + AARVH+ +P    +R+      +  +     P    
Sbjct: 122 FDAAYWRAKEGELARTILALPNVKAARVHLAVPQGRGYRREAEATASVTLTTDGTPISRN 181

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A+A++ LV++ VP +    V V+DS   ++++ E             +  + E++ N+ 
Sbjct: 182 QAKALKFLVSSGVPGMTADRVAVIDSERGVISSGEDFDG---------EDREAEMKRNVE 232

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + LAA +G  N    +  ++  +++ + E  +DP  +   S    + A +S  +Q + AV
Sbjct: 233 RILAAHVGHGNAIVELHLDVVNESELLTEQRFDPQERALISQESEESADQSSNAQ-QGAV 291

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           T   N+P   D      +S  +  +  ++SN+E++  +   T       RL++AV+VN  
Sbjct: 292 TAASNLPEGQD--SAGDQSRSSRSETRQRSNFEVSKITREVTRQPGATRRLTVAVLVNGV 349

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
             TE  G +    + ++ L  I ++V++A G +  RGD IT+ S+ F       +     
Sbjct: 350 ARTEANGEATLVPREETELQAIRELVASAVGFDEGRGDAITVKSLPFASLSQAGTLASAG 409

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
            F+  L  +       +   +       L    LR L     A             PP  
Sbjct: 410 GFLSRLDLN-----GLIRIALVGFFALALAAFLLRPLLRSKPAGSPGQAMLDRPERPPAL 464

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
           +   T   P   +A      D                      RL  +++  ++   +IL
Sbjct: 465 AGARTEGAPAPAVANVVPEIDFAPA---------GTDGSDPVGRLKELMKSRKDESLQIL 515

Query: 547 RKWARSEIE 555
             W     +
Sbjct: 516 SGWIEKRED 524


>gi|117624078|ref|YP_852991.1| flagellar M-ring protein [Escherichia coli APEC O1]
 gi|115513202|gb|ABJ01277.1| Flagellar M-ring protein [Escherichia coli APEC O1]
          Length = 333

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 8/334 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK---DA 294
           +  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+     +   S+   ++
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTEEQYRPNGDESHAALRSRQLNES 298

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
           ++S +  P        N P  ++       S ++
Sbjct: 299 EQSGSGYPGGVPGALSNQPAPANNAPISHASGKS 332


>gi|325288778|ref|YP_004264959.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964179|gb|ADY54958.1| flagellar M-ring protein FliF [Syntrophobotulus glycolicus DSM
           8271]
          Length = 534

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 109/557 (19%), Positives = 220/557 (39%), Gaps = 32/557 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           ++ + +         L + + +IL +  LV +        + ++P Y  L+ KL  ++  
Sbjct: 4   SLAEIIKSVRGFWEKLSKPQRVILIAAPLVVLTALTILIVWASTPSYAVLFSKLSSTEAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L + N  +++ ++G++I VP S + + R+ LA  GLP  S+ S +E  ++V   G
Sbjct: 64  AITTKLKDLNYSYKLEESGATIQVPESQLAQIRLDLANAGLPQKSTFS-FENLNEV-HLG 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR--A 179
            T   +++  V  L+ E+  TIQ++ GI  ARVHIV+P+   F +     TA+V ++   
Sbjct: 122 ETDKDRQLRYVLGLQNELETTIQTMDGIEYARVHIVIPEQSLFTEKQTESTAAVTVKKNP 181

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQA 236
                     AI +L+  +V  L +  VT++D+ G +L+     +    +    L + Q+
Sbjct: 182 GTELSADQVRAIANLLVYSVEGLQIEKVTIVDTNGNVLSDELGKDKTNRMSVTDLQLQQS 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR 296
           +++ I+ ++   L    G         A LN D Q+I    +   +      R     + 
Sbjct: 242 VENNIQKSVQTMLDKAFGAGKTIVRTNAALNFDQQKITSQTH---TDGAIESRQETSERV 298

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           S+          E N+P     +     ++  ++K     NY+ N     T     +++R
Sbjct: 299 SDGQTTGGVPGTETNIPTYPADEQTDQGTI--SEKYTSTENYQPNVVQEETVVSPGQIKR 356

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           L+I+V+ +   +                L+ I  IV++A G++  RGD I +  + F + 
Sbjct: 357 LTISVMADTDSI------------TAQQLSNIEAIVASAAGVDQNRGDVIQVAGLPFDKT 404

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                          ++   A ++      V  L +  + +  LR           E   
Sbjct: 405 TTLQEQAEA-----EIAERNAKILQYAEIGVAVLAILLVAVILLRNRRARRRMSGEEQVL 459

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
            +      ++      ++ +   A   +   I          I     ++    +     
Sbjct: 460 ATAEDMTLLTVEEAERMLADQLDAERQAELRIAKKKVKSPDEIE---REKIRKEVEKYSN 516

Query: 537 INEERFAKILRKWARSE 553
            N    A+++R W   E
Sbjct: 517 ENPSEVARLVRTWLAEE 533


>gi|332558480|ref|ZP_08412802.1| FliF [Rhodobacter sphaeroides WS8N]
 gi|2494549|sp|Q53151|FLIF_RHOSH RecName: Full=Flagellar M-ring protein
 gi|1419203|emb|CAA67251.1| FliF protein [Rhodobacter sphaeroides]
 gi|332276192|gb|EGJ21507.1| FliF [Rhodobacter sphaeroides WS8N]
          Length = 570

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 116/566 (20%), Positives = 218/566 (38%), Gaps = 33/566 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  +L   +        R  + A +IL   +L +A    +  P    LY  L  ++  R+
Sbjct: 21  MRGMLDQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 80

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L+   I   I +    ++VP +   +AR+ LAAQGLP      G  L   +   G +
Sbjct: 81  IDSLTGGGIAAVIDERTGEVAVPGAEYHRARMLLAAQGLPQ-GLPDGNALLSDLP-MGTS 138

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ +   
Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 198

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239
                  EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     ++ 
Sbjct: 199 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 258

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                I   L    G  N    V  +++   Q+IRE   DPD     + +     + +  
Sbjct: 259 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 316

Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            Q         N P                   +   +  +    N+E++ K   T    
Sbjct: 317 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAAAPMRSRSQNSTRNFEVSRKVETTLPAT 376

Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
            ++ R+S AVVV                    ++  A++ ++  +A G ++ RGD +TIT
Sbjct: 377 ARIARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 436

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  FL+  +  +               A +      L    +V    +  +      +  
Sbjct: 437 AQPFLDTVVPEASG------WSAEPWVADLARQGFLLAALAVVALGVVRPIL-----NRV 485

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                     L     +  V  G   +D  A   + Q   + +    +R      ++  L
Sbjct: 486 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 541

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
            +  ++E +E R A  +R+   +E++
Sbjct: 542 VIRKLVEEDEGRIATTIRQMIAAELD 567


>gi|219670159|ref|YP_002460594.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2]
 gi|219540419|gb|ACL22158.1| flagellar M-ring protein FliF [Desulfitobacterium hafniense DCB-2]
          Length = 537

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 111/561 (19%), Positives = 212/561 (37%), Gaps = 33/561 (5%)

Query: 1   MAI--LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M     +           L R + +I  +  L   +  ++  ++ ++P Y  ++ +L   
Sbjct: 1   MNFSWAEIKQSILGFWGKLSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDI 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I+  L E  + +++  NGS+I VP       R+ LA  GLP  S  S  E  +K  
Sbjct: 61  QAGEITSELDELKVKYKLGSNGSAILVPEKEAAGVRLKLANSGLPKGSEFSWSESLNKT- 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
             G T   + +     L+ E+  T++++S +  ARVH+ +P+   F +     TA+V + 
Sbjct: 120 RVGETESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLT 179

Query: 179 A--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA----NEMERNILGKSLS 232
               +         I +L+AA+V  L + DVT+LDS G  L+     +     +    + 
Sbjct: 180 LKEGSSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLNEDNQPGKMTATQIQ 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + Q  +     ++   L    G         A LN D      + + P S +  S     
Sbjct: 240 LKQLTEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGSVLSESHTT-- 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
               + TS   +A  V+ N+P              +++K  +  N++++T          
Sbjct: 298 -ENTTNTSPGGTAPGVDTNVPGYLA--PDGTWITSSSEKTSDTLNHQVDTTQEQRIKSPG 354

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RLS++V++           S    +ID  + +I  IV++A GI+  RGD I + ++ 
Sbjct: 355 DIARLSVSVLL--------DADSISADQIDDQIEKIEAIVASAAGIDRERGDEIQVAALP 406

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F +                      T I   V  +  L+  F+      R     DA+  
Sbjct: 407 FDKTGALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFR--MRSKRKQDAESL 462

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E+G      P   +  +       +  A     Q     +  +Q +       +    + 
Sbjct: 463 ELGQALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQ-------KIKESVD 515

Query: 533 HMIEINEERFAKILRKWARSE 553
             ++ N +  A++++ W   E
Sbjct: 516 IYVQNNPDEVARLVKTWLAEE 536


>gi|46204512|ref|ZP_00209445.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 435

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 158/435 (36%), Positives = 244/435 (56%), Gaps = 9/435 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   +Q  + + +   LG  R++ L  V L+  +      ++++ P  + LY  L   DV
Sbjct: 1   MFGREQAERLWSNIVDLGARRLIALGLVGLLVFLGVGVGAYYLSRPAQETLYTGLSREDV 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           +RI   L +  I F +S +G+++ V      +AR+ LA +GLP SS  SGYELF+ + S 
Sbjct: 61  SRIGGVLKDNGIPFDVSSDGTAVLVSFGHTAQARMLLAEKGLPQSS-KSGYELFNDLGSL 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G+TSFMQE+TRVRALEGEIARTIQ + G+ AARVH+V+PD GSFR+     +ASV++R  
Sbjct: 120 GMTSFMQEVTRVRALEGEIARTIQGMKGVRAARVHLVLPDRGSFRREQQPASASVVVRTE 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQH 239
                  A+AIR LVA+A+P +    VTV+ S G +L A +       GK  ++ +++  
Sbjct: 180 PADDVSGAQAIRQLVASAIPGMKPDRVTVIGSEGTVLLAGDDAGTAPTGKMATLEKSVSR 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           E++ NI + LA +LGV NF  +V  +LN D     E +Y+PD +VERS+R  ++ + ++ 
Sbjct: 240 EMQDNIRRTLAPYLGVGNFEVSVATQLNTDKTSTNETIYNPDQRVERSVRSVRENENAQN 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
              +   + ++N+P    R     +S   + KKE+ +NYEI+ K+I T  D Y + RLS+
Sbjct: 300 RNSQRPTSAQENLPDQRTRSDGNDQSSNESSKKEDLTNYEISQKTIQTVSDGYAIRRLSV 359

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKI------VSAATGINSRRGDTITITSMDF 413
           AV+VN+ RLT + G   D+  ID  +AEI  I                RGD I + ++ F
Sbjct: 360 AVLVNRSRLTAMAG-PDDKAGIDKQIAEIEXIGSGLPXPRPRXLPARERGDIIKVAAVGF 418

Query: 414 LENQLFNSGTVQVSF 428
           + +         +S 
Sbjct: 419 INDGQPLEPVPPLSL 433


>gi|289578434|ref|YP_003477061.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9]
 gi|289528147|gb|ADD02499.1| flagellar M-ring protein FliF [Thermoanaerobacter italicus Ab9]
          Length = 503

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 104/561 (18%), Positives = 205/561 (36%), Gaps = 73/561 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + + + L  + ++  +      + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKF---DKKQKMQLGVIAILLFIGVSLLVYIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L     + ++IS++G +I VP+    + R+ LA +G+P    +    +    NS 
Sbjct: 64  VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEGGFSFQDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F        A     + 
Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQ 235
           ++          + I   V+ +V  L   +VTV+D+ GK+LTA  +          ++ +
Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q +++ N+   L    G  N        LN D +    I Y P   +        + +
Sbjct: 241 KVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++  +Q  +      N P  +        +  + +K E   NYEIN    +      
Sbjct: 301 LKEKATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIEAQG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+E +S+AVVVNK                +S   +I  +V+ A G +SR    +++  M 
Sbjct: 358 KIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAGGDSRV--QVSVQGMQ 402

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++         +  M   +     V      ++  L++       + R    + +   
Sbjct: 403 FNQD--------LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFIMMRRKKKETSLAT 454

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                   + P                                   I+     +   ++ 
Sbjct: 455 AEEEALATAEP--------------------------------IEEIDFTYEDEKKKQIE 482

Query: 533 HMIEINEERFAKILRKWARSE 553
            +I+   E   +I+R W   E
Sbjct: 483 KLIKEKPEIVVQIIRTWLNEE 503


>gi|52080223|ref|YP_079014.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580]
 gi|52785600|ref|YP_091429.1| flagellar MS-ring protein [Bacillus licheniformis ATCC 14580]
 gi|319645998|ref|ZP_08000228.1| FliF protein [Bacillus sp. BT1B_CT2]
 gi|52003434|gb|AAU23376.1| flagellar basal-body M-ring protein [Bacillus licheniformis ATCC
           14580]
 gi|52348102|gb|AAU40736.1| FliF [Bacillus licheniformis ATCC 14580]
 gi|317391748|gb|EFV72545.1| FliF protein [Bacillus sp. BT1B_CT2]
          Length = 533

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 95/572 (16%), Positives = 200/572 (34%), Gaps = 62/572 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +L    +      +  + + ++L  ++ + ++L +      +S     LY  L   +  
Sbjct: 4   NLLQIKTKITDFWKNRSKLQKILLIGIVALAVILSIIIGIVASSNKMVPLYKDLSAEETG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I   L E  I   ++ +GS I VP   V + ++ LAA+GLP S S   Y  F +   FG
Sbjct: 64  QIKQVLDEKGIPSEVATDGSVIKVPEEKVDELKVDLAAEGLPKSGS-IDYSFFGENAGFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIR 178
           +T    ++ +V+A + E++  I+ I GI  ++V I +P    F          +  + ++
Sbjct: 123 MTDNEFDVLKVKATQTELSNLIKGIDGIKDSKVMINLPKESVFVGEEKPEASASIVLQVK 182

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER----NILGKSLSIV 234
             +         + HLV+ +VPNLD  ++ ++D           E     +       + 
Sbjct: 183 PGHTLDQNEINGLYHLVSKSVPNLDPKNIVIMDQNSTYYDQTGKESGSYADSYSSQREVK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
             I+ +++  I   L   +G D    +V ++++   +   E + +P        +  S  
Sbjct: 243 AQIEKDLQRQIQTMLGTMMGQDKVVVSVTSDIDFTKENRTEDLVEPVDKENMEGITVSAE 302

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              +    + +Q        +N    +  +        + +K EE+ N E+N        
Sbjct: 303 RVSETYSGQGAQAGGVNGTGEN-DVTNYAETEGGTGNGDYEKSEERINNEVNRIHKEIAE 361

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--------GINSR 401
             YK+  L + V+V          +S    + D     ++ IV  +           +  
Sbjct: 362 SPYKIRDLGVQVMVEPPDANNP--QSLPAEREDDIKKILSTIVKTSIDKNYEEEPLTDED 419

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
             + I ++   F   Q  + GT                  A    +  ++   + L   R
Sbjct: 420 VENKIVVSVQSFDGKQTIDEGTETGGIP-------MWAYIAGGAALVAVIGLIIWLVRRR 472

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +  + +  ++     +  +    +++   T                              
Sbjct: 473 KNRDDEYEEEWYETPQEPIRVADVNNEKETEET--------------------------- 505

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                   +L  M +   E FAK+LR W   +
Sbjct: 506 ----VRRKQLEKMAKDKPEEFAKLLRSWLTED 533


>gi|297544710|ref|YP_003677012.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842485|gb|ADH61001.1| flagellar M-ring protein FliF [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 503

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/562 (18%), Positives = 206/562 (36%), Gaps = 75/562 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + + + L  + ++  +      + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKF---DKKQKMQLGVIAILLFIGVSLLVYIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     + ++IS++G +I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  VVVEKLKTEFKVPYKISNDGKTILVPAQYKDEVRMKLATEGIPEG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASV 175
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F        A     +
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIV 234
            ++          + I   V+ +V  L   +VTV+D+ GK+LTA  +          ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDDTAENANSQFALQ 239

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLS 291
           + +Q +++ N+   L    G  N        LN D +    I Y P   +        + 
Sbjct: 240 KKVQEDLQQNLQTLLEQVFGPGNVVVRANVTLNFDKKTEDRIEYLPVEGNDNKGIVRSIQ 299

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +  +++  +Q  +      N P  +        +  + +K E   NYEIN    +     
Sbjct: 300 ELKEKATGTQGGNPAGTSSNNPPTTQT---TGSNTSDYNKTETTINYEINQIKTSLIEAQ 356

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
            K+E +S+AVVVNK                +S   +I  +V+ A G +SR    +++  M
Sbjct: 357 GKIESISVAVVVNKN-------------LNNSMKQQIADLVAKAAGGDSRV--QVSVQGM 401

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F ++         +  M   +     V      ++  L++       + R    + +  
Sbjct: 402 QFNQD--------LLKTMQQQANVSKGVPMYAWAMLAALVLGGGLFFIMMRRKKKETSLA 453

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                    + P                                   I+     +   ++
Sbjct: 454 TAEEEALATAEP--------------------------------IEEIDFTYEDEKKKQI 481

Query: 532 LHMIEINEERFAKILRKWARSE 553
             +I+   +   +I+R W   E
Sbjct: 482 EKLIKEKPDIVVQIIRTWLNEE 503


>gi|288550127|ref|ZP_05969368.2| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
 gi|288316307|gb|EFC55245.1| flagellar M-ring protein FliF [Enterobacter cancerogenus ATCC
           35316]
          Length = 533

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 112/557 (20%), Positives = 211/557 (37%), Gaps = 46/557 (8%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           +A+  ++ +   +    + ++  Y  LY   E   V ++   L   +I +RI+ +   I 
Sbjct: 1   MAAGGVLLVAAIVF-SLWRSNQGYVALYGSDEKLPVAQVVEVLGAESIAYRINPDNGQIL 59

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP   + +AR+ LAA+G+ ++    GYEL DK    G + F+Q +   R+LEGE+AR+I 
Sbjct: 60  VPEDKLPRARMALAAKGI-TAVMPDGYELMDKDEMLGSSQFVQNVRYKRSLEGELARSIM 118

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPN 201
           ++  +  ARVH+ + +  SF       +++ +   +R       +   AI  LVA +VP 
Sbjct: 119 ALDPVENARVHLGLSESSSFVMTNKPQSSASVMLQLRYGKHLDEQQVAAIVQLVAGSVPG 178

Query: 202 LDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           +  G V V+D  G LL+ N  +         +   +++ I++E   NI   L+   G +N
Sbjct: 179 MQPGSVRVVDQAGNLLSENGQQGGTSMASIRQGRDVIERIKNETTNNIAALLSPLFGNEN 238

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP---- 313
           FR +V   ++M + +  +       K  +    +   + +             N P    
Sbjct: 239 FRISVTPTVDMSSVEETQERL---GKEPQVSDENISHENTTNELAMGIPGSLSNRPVNQP 295

Query: 314 -----------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                        +  +         + + +EQ  Y  +       H  YKLE+L +AV 
Sbjct: 296 APATPPMAANAQTAQTETQNRTPSSLSSRSQEQRKYAFDRDIRHIRHPGYKLEKLRVAVA 355

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           +N+                   L  + ++V  A GI   RGD++T+  + F++       
Sbjct: 356 LNQAA-------KPLASMTPEQLTALTRLVEDAAGIEKDRGDSLTLDRLAFIDRTPDGFP 408

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
             +      +                 +L+    L  LR L      ++         S 
Sbjct: 409 EPKWWQDPNIQYW-------GQNGGIGMLILLALLFGLRPLAQRYGRREPVELAAIEGSA 461

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
              +         +    L     +  +      S + + V       L  + E   ER 
Sbjct: 462 QNEAIENDMVTTESGLTGLPGPAFNQDTELPPQSSGLETKVEY-----LQMLAENETERM 516

Query: 543 AKILRKWARSEIEDRYT 559
           A++L++W  S      T
Sbjct: 517 AEVLKQWINSNERTDNT 533


>gi|254458688|ref|ZP_05072112.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1]
 gi|207084454|gb|EDZ61742.1| flagellar M-ring protein FliF [Campylobacterales bacterium GD 1]
          Length = 570

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 116/571 (20%), Positives = 222/571 (38%), Gaps = 25/571 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH----YDNLYVKLE 56
           M       Q     T L   + +I+A+ I+  +   +    +    +    Y+ L+  L 
Sbjct: 1   MDFKILFSQLVVLYTKLTSQQRIIIAAAIIGIVSFLIFMVVYTAKKNTDDEYEILFNSLS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
             D  +I   L +  I +++ DN + I VP  +V K RI +A+ G+P +    G+ELFD 
Sbjct: 61  SEDAAKIVDQLEKDGIVYKLEDN-NIIKVPKDIVYKERITIASMGIPKNRG-VGFELFD- 117

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TSF Q +  +RALEGE++RTI ++  I +A V + +P    F      P+ASVM
Sbjct: 118 TQEFGATSFDQNVKYLRALEGELSRTINALGPIESASVSLAIPKDTLFIAKQVDPSASVM 177

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSL 231
           ++         K    I++LVA+AVP +    V +++S G+ L   +    +        
Sbjct: 178 VQLVEEQRLSPKQIRGIKNLVASAVPKMKASAVMLINSEGETLGDEDEMAQMGELSTVQQ 237

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
                 + + +  I + ++ F+ G +   + V  E +   Q      YDP++ V      
Sbjct: 238 KFKTKEEKKRQSKIIQVISPFVGGEEKVVAQVTIEFDFSIQNSTSETYDPENVVRSEQVS 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            +  +    ++         N+  V   K    ++ E  +K    +NYE+      T   
Sbjct: 298 EEKREGGSPAEIGGVPGTVSNIGPVQGLK--SNQTNEKYEKNTGTTNYEVGKTVSTTKSQ 355

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSA------DQGKIDSYLAEINKIVSAATGINSRRGD 404
             +++R+S AV+V+     ++            +   +S L  +  +V  + GIN +RGD
Sbjct: 356 FARIKRISAAVIVDGKYKFKLDAEGKSTDELEYEPLQESDLDALASLVGRSIGINDQRGD 415

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I++ ++ F          ++   +        T +     +   + V  L L   +++ 
Sbjct: 416 QISVKNLQFKR----GDTHIEADGVSQAVTFSQTYLAPFSGVFKYVFVLILLLILYKKVI 471

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
           +    +  EV  +      P                     +             +    
Sbjct: 472 SPFALRMLEVSKEDDDLDRPTLDIDDDEEEDLVEKVQMMRKKVESQLGVGDGFNEDELKH 531

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +    ++ +M E   E  A +L+     E +
Sbjct: 532 EVLLEKVRNMAEDAPEEIAALLQSLLTEEED 562


>gi|167037669|ref|YP_001665247.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116084|ref|YP_004186243.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856503|gb|ABY94911.1| flagellar M-ring protein FliF [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929175|gb|ADV79860.1| flagellar M-ring protein FliF [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 503

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 104/561 (18%), Positives = 204/561 (36%), Gaps = 73/561 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + + + L  + ++  +      + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L     I ++IS++G++I VP+    + R+ LA +G+P    +    +    NS 
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F        A     + 
Sbjct: 121 ATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235
           ++          + I   V+ +V  L   +VTV+D+ GK+LTA             ++ +
Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q +++ ++   L    G  N        LN D +    I Y P   +        + +
Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++  +Q  S      N P V            + ++ E   NYEIN    +      
Sbjct: 301 LKEKATGTQGGSPAGTATNNPPV---ISTTGNGTSDYNRTEITINYEINQIKTSLVQAQG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+E +SIAVV+N             Q   +S   +I  +V+ A G +S     +++  M 
Sbjct: 358 KIENISIAVVIN-------------QNLNNSMKQQIADLVTKAAGGDSLV--QVSVQGMQ 402

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++         +          +  +   V+ +   LV   GL  +       +    
Sbjct: 403 FNQD---------LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               + + +  P                                  I+     +   ++ 
Sbjct: 454 TAEQEVLATVEPTYE-------------------------------IDFSDKDEKKKQIE 482

Query: 533 HMIEINEERFAKILRKWARSE 553
            +I+   +   +I+R W   E
Sbjct: 483 KLIKEKPDIVVQIIRTWLNEE 503


>gi|304414645|ref|ZP_07395721.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1]
 gi|304283183|gb|EFL91591.1| flagellar MS-ring protein [Candidatus Regiella insecticola LSR1]
          Length = 532

 Score =  286 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 104/544 (19%), Positives = 221/544 (40%), Gaps = 32/544 (5%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
             +    I   +    + +S  Y  L+   E     ++   L   +I +R++ +   I V
Sbjct: 1   MGIAAAMISGAIIFSLWRSSQSYTVLFGSQEQIPTTQVVEVLGSESIPYRVNPDNGQILV 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
             + +G+AR+ LAA+G+ +++   GYEL DK    G + FMQ +   R+LEGE+A+++ +
Sbjct: 61  AENQLGRARMALAAKGI-TAALPVGYELMDKETMLGSSQFMQNVRYKRSLEGELAQSVMA 119

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNL 202
           +  +  ARV + M +  SF       +++ +   ++  +    +   AI  LV+ +VP +
Sbjct: 120 LDAVEYARVRLGMSEASSFVITTKPDSSASVILRLKPRHQLTPEQVGAIIQLVSGSVPGM 179

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSL----SIVQAIQHEIEMNINKALAAFLGVDNF 258
               V V++  G+LL+      N    +L     + + +Q  +E N+   L   +G +N+
Sbjct: 180 KASQVRVINQNGELLSEGYQNSNNGLSTLKSGPELARKLQLAVEKNVANLLNPIVGANNY 239

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
           R +V  +L++   + +   Y       R++  + + + S   +         N P     
Sbjct: 240 RISVTTQLDLSNIEEKLERY---GADPRTLDENVNQESSSDERAMGIPVTLSNQP---AA 293

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
           K          ++ + Q  +  +       H +YKLE++++A+V+NK         SA +
Sbjct: 294 KNNAQSPSTMLNRSQSQRKFAYDRDIRHVRHPSYKLEKMTVAIVLNKAA-------SALE 346

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 L E+ ++   A GIN  RGD++T+  + F     +    +         R    
Sbjct: 347 QWTTPQLDELKRLAIDAAGINFDRGDSLTMNLITFTPQTEYEETPLPWWQEPAALRW--- 403

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAK-----KGEVGGKSILSPPPISSAVTTGL 493
                   +      + G+  L +    ++             +++      +       
Sbjct: 404 -AQMGGIGLIAFFFLWFGVRPLIQRVTREEQTSSTSVASPDQPQNLTPETTAAMGDAAPK 462

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           + ++ +  D   +  F    +L S  +   +K S   +  +     +R A+++++W  S 
Sbjct: 463 INDEKVLADVLPKSSFQEEDDLPSPASGLETKIS--HMQMLAYSETDRVAEVIKQWINSN 520

Query: 554 IEDR 557
              R
Sbjct: 521 ERTR 524


>gi|89895735|ref|YP_519222.1| hypothetical protein DSY2989 [Desulfitobacterium hafniense Y51]
 gi|89335183|dbj|BAE84778.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  286 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 110/561 (19%), Positives = 216/561 (38%), Gaps = 33/561 (5%)

Query: 1   MAI--LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M     +      +    L R + +I  +  L   +  ++  ++ ++P Y  ++ +L   
Sbjct: 1   MNFSWAEIKQSILEFWGKLSRPQKIITVAAPLAVAIALISLLYWASNPSYVAIFTELTDI 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +   I+  L E   ++++  NGS+I VP       R+ LA+ GLP  S  S  E  +K  
Sbjct: 61  EAGEITSELDELKANYKLGSNGSAILVPEKEAAAIRLKLASAGLPKGSEFSWSESLNKT- 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
             G T   + +     L+ E+  T++++S +  ARVH+ +P+   F +     TA+V + 
Sbjct: 120 RVGETESDRRLRYNLGLQTELEATLKTLSNVKDARVHLNIPEETLFIEQQEATTAAVTLT 179

Query: 179 A--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK----LLTANEMERNILGKSLS 232
               +         I +L+AA+V  L + DVT+LDS G     +L+ +     +    + 
Sbjct: 180 LKEGSSITEDQIRGIANLLAASVKGLKLEDVTILDSNGNTLSDVLSEDNQPGKMTATQIQ 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + Q  +     ++   L    G         A LN D      + + P + +  S     
Sbjct: 240 LKQLTEENTRKSVQSMLDKAFGAGKTIVRTNATLNFDQVTTDTVTHGPGAVLSESHTT-- 297

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
               + TS   +A  V+ N+P              +++K  +  N++++T          
Sbjct: 298 -ENTTNTSPGGTAPGVDTNVPGYLA--ADGTWITSSSEKTSDTLNHQVDTTQEQRIKSPG 354

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RLS++V++           S    +ID  + +I  IV++A GI+  RGD I + ++ 
Sbjct: 355 DIARLSVSVLL--------DADSISADQIDDQIEKIEAIVASAAGIDRDRGDVIQVAALP 406

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F +                      T I   V  +  L+  F+      R     DA+  
Sbjct: 407 FDKTGALEQEQALAE--AARKERLRTYIEWGVGALLALVFLFVLFR--MRSKRKQDAESL 462

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E+G      P   +  +       +  A     Q     +  +Q +       +    + 
Sbjct: 463 ELGQALQPVPLAATEELLLAQQEAEREAELKLAQQKQKSAEEIQRQ-------KIKESVD 515

Query: 533 HMIEINEERFAKILRKWARSE 553
             ++ N +  A++++ W   E
Sbjct: 516 IYVQNNPDEVARLVKTWLAEE 536


>gi|196247639|ref|ZP_03146341.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16]
 gi|196212423|gb|EDY07180.1| flagellar M-ring protein FliF [Geobacillus sp. G11MC16]
          Length = 527

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/574 (16%), Positives = 189/574 (32%), Gaps = 70/574 (12%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +  +  +++           + +  +    I V +       FF        LY  L   
Sbjct: 1   MNSKWKEWWGRARSFWQERTKKQKWLAIGGIAVVLFSIGIGVFFATRTEMVPLYSNLTPQ 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +  +I   L    +   ++D G++I VP   V   ++ LAA+G+P+S     Y  F +  
Sbjct: 61  EAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNA 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI 177
           SFG+T     + +++A++ E+A  +++I G+  A+V I +P    F        +AS+++
Sbjct: 120 SFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVL 179

Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSL 231
           R         +   A+ HLVA +VPNL   ++ +++   +         N  G       
Sbjct: 180 RTKPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTGATFASQQ 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286
            I + I+ +I+  + + L   +G D    +V A+++   ++  E +  P     D  +  
Sbjct: 240 QIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAV 299

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S++  K+      + P        N       +     +  N ++ EE  N E+N     
Sbjct: 300 SVQRIKETYAGSGAPPGGTAGTGTNETP--GYQGASGATNGNYERTEETINNEVNKIKKQ 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GIN 399
                YK+  L I V+V           S     ++     +  IV  +          +
Sbjct: 358 IVESPYKIRDLGIQVMVEPP--DPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTD 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
                 I ++   F     F             +     ++   + L   L         
Sbjct: 416 EDINSRIVVSVQKFNGKPTFTEPDPVRPAWWWYAAGAGALLLIALLLFFWL--------- 466

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
                                                D    +         +       
Sbjct: 467 ---------------------------------RRREDEEEDEEFVFAPPLPAEPELPEP 493

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                +    +L  + +   + FAK+L+ W   E
Sbjct: 494 PETEERMRRRQLERLAKEKPDEFAKLLKTWLSEE 527


>gi|254519422|ref|ZP_05131478.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA]
 gi|226913171|gb|EEH98372.1| flagellar MS-ring protein [Clostridium sp. 7_2_43FAA]
          Length = 523

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/564 (18%), Positives = 226/564 (40%), Gaps = 55/564 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +   + +    S  +   + + + ++  I+   +  F+ ++  Y  L+  L+ SD
Sbjct: 4   MDKLKESFSKLWGKFKSFSKGIRIAIIAALVTFIIAIGSLFFYNSANKYKVLFSNLDASD 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              ++  L E  +D +I   G +I VP + V + R+ LA +    S  + GYEL D  NS
Sbjct: 64  AQLVTNKLKEKKVDMKI--EGETIMVPKASVDELRLELAPE---LSDGSKGYELMDTGNS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR- 178
           FG+T    ++ ++R  +GE+ +TI+S   I   RVHI       F +      A+V ++ 
Sbjct: 119 FGMTDEEFKLKKLRMQQGELEKTIKSFPQIDTVRVHITPSKDSVFVEDKEPGKAAVYLKL 178

Query: 179 -AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-------GKS 230
              N    +  E+I  LV+ +  N+   ++ V+D    LLT +    +          K 
Sbjct: 179 LPGNKLGKEQVESIVALVSGSTENVPKENIEVIDDNMNLLTKDLNNSDGTEVSSETIEKQ 238

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
            ++ +  + +I+ +I   L   +G +  +S+V  +L+ D++Q  E + DP+ KV  S + 
Sbjct: 239 FNLEKKYEEDIQKSIIDLLEPVVGKNKVKSSVNVDLDFDSKQKTETIIDPN-KVIVSQQT 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            K+     T +          + +     +    +   + ++E  +NYE       T   
Sbjct: 298 IKEKNGINTGENSGGP-----VDNNMGNTIDEGTTGNGSSREEVNTNYESGKTETKTISA 352

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             +++RL+ +V ++                  +  A I K V+ A G+N+ RGD++++  
Sbjct: 353 PGEVKRLTASVFIDGN-------------IDGNVQAAIEKSVANAIGLNTERGDSVSVVG 399

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           M F       +     S  ++L++     +     L    L+  + +  L R  + ++ +
Sbjct: 400 MTFDPITKEEAQKEFDSINELLAKENRNKMIIYSVLGLLGLIIIVVILILVRRKSKNNQE 459

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           + E                        ++ +D    +  +      +  +       +  
Sbjct: 460 EKENLL---------------------DVVIDDRLSNENTEVMPSINFESINPKAHIENE 498

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
           +        ++ A I++ W     
Sbjct: 499 IKKYATDKPDQVADIVKSWLAENE 522


>gi|138894740|ref|YP_001125193.1| flagellar MS-ring protein [Geobacillus thermodenitrificans NG80-2]
 gi|134266253|gb|ABO66448.1| Flagellar basal-body M-ring protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 527

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/574 (16%), Positives = 188/574 (32%), Gaps = 70/574 (12%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +  +  +++           + +  +    I V +       FF        LY  L   
Sbjct: 1   MNSKWKEWWGRARSFWQERTKKQKWLAIGGIAVVLFSIGIGVFFATRTEMVPLYSNLTPQ 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +  +I   L    +   ++D G++I VP   V   ++ LAA+G+P+S     Y  F +  
Sbjct: 61  EAGQIKATLDGRGVSAEVADGGTTIKVPKEQVDALKVELAAEGIPNSGV-IDYSFFGQNA 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI 177
           SFG+T     + +++A++ E+A  +++I G+  A+V I +P    F        +AS+++
Sbjct: 120 SFGMTDNEFNMVKLKAMQTELANLMKTIDGVEDAKVMINLPQPSVFVSDEKGEASASIVL 179

Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSL 231
           R         +   A+ HLVA +VPNL   ++ +++   +         N          
Sbjct: 180 RTKPGYQFSDEQIRALYHLVAKSVPNLSTDNIVIMNQFFEYFDLKNDSGNSTRATFASQQ 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286
            I + I+ +I+  + + L   +G D    +V A+++   ++  E +  P     D  +  
Sbjct: 240 QIKKQIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQEKREENLVAPVGEENDEGIAV 299

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S++  K+      + P        N       +     +  N ++ EE  N E+N     
Sbjct: 300 SVQRIKETYAGSGAPPGGTAGTGTNETP--GYQGASGATNGNYERTEETINNEVNKIKKQ 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GIN 399
                YK+  L I V+V           S     ++     +  IV  +          +
Sbjct: 358 IVESPYKIRDLGIQVMVEPP--DPDDPNSLTPEAVNDIQKILGTIVRTSIDKGEAQTLTD 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
                 I ++   F     F             +     ++   + L   L         
Sbjct: 416 EDINSRIVVSVQKFNGKPTFTEPDPVRPAWWWYAAGAGALLLIALLLFFWL--------- 466

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
                                                D    +         +       
Sbjct: 467 ---------------------------------RRREDEEEDEEFVFAPPLPAEPELPEP 493

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                +    +L  + +   + FAK+L+ W   E
Sbjct: 494 PETEERMRRRQLERLAKEKPDEFAKLLKTWLSEE 527


>gi|57168454|ref|ZP_00367588.1| flagellar M-ring protein FliF [Campylobacter coli RM2228]
 gi|305432873|ref|ZP_07402031.1| flagellar M-ring protein FliF [Campylobacter coli JV20]
 gi|57020262|gb|EAL56936.1| flagellar M-ring protein FliF [Campylobacter coli RM2228]
 gi|304444027|gb|EFM36682.1| flagellar M-ring protein FliF [Campylobacter coli JV20]
          Length = 560

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSGANNGYAVLVDNV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           + S    I   L + N+ + +      I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  DPSSSAAIVAKLEQNNVPYILESESK-ILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              SFG T+  Q +   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQSFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AA+P L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA +  G D  R +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 YKSDQERALEDKIIETLAPYAGGTDKVRVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKEPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVVRTSAAVTIDGKYQDVVDENGDVKSEYVPLSKEELASVESIVKNTINYSANRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +     R     I  + +++  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----GRFIEPFIPPVKYIIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
              +     + +   P          +   N A     + +       +  I     +  
Sbjct: 472 L--EDVAAQEEVQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGENFNEDSIQ---YEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKSEEIAALLQNLIQNDTEFGEKD 559


>gi|262273540|ref|ZP_06051354.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
 gi|262222518|gb|EEY73829.1| flagellar M-ring protein FliF [Grimontia hollisae CIP 101886]
          Length = 548

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/548 (21%), Positives = 215/548 (39%), Gaps = 30/548 (5%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
               R + L   I V + + +    +     Y  LY + E  D N++  AL +   D+ +
Sbjct: 22  FSGARTVALLGTIAVAVAVAVVLGLW-QGGEYRPLYGEQEQYDRNQVIAALEQNRFDYYV 80

Query: 77  SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
                +I V  S V  ARI +AA G+  +   +G E+ +K  + G + F++       LE
Sbjct: 81  EPQKGNIMVERSQVAAARIAMAAAGI-EAKVPAGLEILNKDFALGTSQFIENARYRHGLE 139

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRH 193
           GE+AR+I ++ G+  ARVH+ +P    F    K     +  V++         +  AI +
Sbjct: 140 GELARSIMTLDGVSNARVHLALPKQTLFVGRNKELPSASVVVVLTPGRVLHSDNIAAIVN 199

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-----ILGKSLSIVQAIQHEIEMNINKA 248
           LVA +VP+L    V V+D  G LL+    +          + LS  Q ++ E   +  K 
Sbjct: 200 LVAGSVPDLQADRVNVIDQHGNLLSNQIGQGTGIGELGNSQYLSYTQKLEAEYIESAAKM 259

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   +GV+NF+  V A +N D  +  E  Y P   V                +PE     
Sbjct: 260 LRPMVGVNNFQVEVAASVNFDRVEATEESYGPKGTVRNEFSS---FDNEGQKEPEGVPGT 316

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
           + N                   + E   +Y ++       +    +ERL+++V++N    
Sbjct: 317 QSNRLP---EGKEDGDGTLVNKRGESSKDYAVDRTLKHIKYQQGSVERLTVSVLLNGEA- 372

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                    +   D+    I  ++  A G++  RGD +++    F  +      +    +
Sbjct: 373 ---------ESFSDAQRENIRTMLIDALGLDEARGDKLSLFVHPFNTDAPELLASTPSWW 423

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
           MD +   +   I + V  +  LLV  +   A+R L   + +++    G +  +     + 
Sbjct: 424 MDNIWLDYLRYILSAVVSLVILLV--VIRPAVRALAQQNASRETVNAGANEGTLSRTVAG 481

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
              G   +  +  + S     +   +L +       + S   L  + E   ER A ++++
Sbjct: 482 EFVGGSTDMAVGSEGSKTPAMNDMPDLPTPETGLEGQSSY--LQMLSEREPERVAHVVKQ 539

Query: 549 WARSEIED 556
           W   +  D
Sbjct: 540 WMTPKNAD 547


>gi|212639567|ref|YP_002316087.1| flagellar MS-ring protein [Anoxybacillus flavithermus WK1]
 gi|212561047|gb|ACJ34102.1| Flagellar basal body M-ring protein FliF [Anoxybacillus
           flavithermus WK1]
          Length = 529

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/574 (18%), Positives = 217/574 (37%), Gaps = 66/574 (11%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   +   + +     +   + + ++   +I + ++      FF    ++  LY  L   
Sbjct: 1   MNERLKQAIERLKLFWSERTKQQKMMALGLIGLLVVSVALTAFFATRTNFVPLYSNLSPQ 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +  +I   L +  I  +I+DNG++I VP  +V   ++ LAA+G+P S S   Y  F K +
Sbjct: 61  EAGQIKATLDQRGIKSQITDNGTTILVPEQLVNTLKVELAAEGIPDSGS-IDYSFFGKNS 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASV 175
            FG+T     + ++ A++ E+A  I+SI G+  A+V I +P    F          +  +
Sbjct: 120 GFGMTDNEFNVLKIEAMQTELANLIKSIDGVEDAKVMINLPQPTIFVGDQQEEASASIVL 179

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SL 231
             +A      +  +++ HLV+ +VPNL   ++ +++   +       E    GK      
Sbjct: 180 KTKAGYKFNEQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKNEENFSSGKTFAEQY 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286
            + Q I+ +I+  + + L   +G D    +V A+++   +  +E + +P        +  
Sbjct: 240 EVKQQIERDIQRRVQQMLGTMIGQDKVVVSVTADVDFTQENRQEELVEPVDKENMEGIAV 299

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S++   +    + +QP     V  N       +     +  + ++ EE  N E+N     
Sbjct: 300 SVQRITETFSGQGAQPGGTTGVGGNAVP--GYQGANGGTNGDYERIEETINNEVNRIKKE 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-------IN 399
                YK++ L I V+V   +  +     A    +D     +  IV  +          +
Sbjct: 358 IVASPYKVKDLGIQVMVEPPKANDPNSLPAQT--VDDITKILGTIVRTSVDKDIAGQWTD 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           +   + + ++   F     FN  T  +     ++   A  +   +         FL L  
Sbjct: 416 TDLQNRVVVSVQPFNGKVQFNEQTSTIPTWAYIAGGGAIALLLALL-------VFLWLRK 468

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
            ++                              L+  + +A+   + +    + +   R 
Sbjct: 469 RKK-----------------------EQLDDELLLQEEPVAVQIPDVNEEVETESTLRR- 504

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     +L  + +   E FAK+LR W   E
Sbjct: 505 ---------KQLEKLAKEKPEEFAKLLRTWLAEE 529


>gi|283955743|ref|ZP_06373234.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792698|gb|EFC31476.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 560

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   +   Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFIEPFIPPVKYFIAAILLFIFYKKVITPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV   +         +  +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDVEDTLEKMNAARKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKSEEIAALLQNLIQNDSEFGEKD 559


>gi|94495429|ref|ZP_01302009.1| flagellar M-Ring protein [Sphingomonas sp. SKA58]
 gi|94424817|gb|EAT09838.1| flagellar M-Ring protein [Sphingomonas sp. SKA58]
          Length = 586

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/580 (19%), Positives = 222/580 (38%), Gaps = 51/580 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +D +                +    ++  + +  AA   +  P   +L+  L  SD + +
Sbjct: 33  MDAIKARVTGFMKQPAVAKSLPLLGLIGTVAVAGAAWLALREPPQRDLFRGLPDSDKSAV 92

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
           +  L +  + +   ++G +++V      KA++ LAAQGLP S +  G  + D +   G +
Sbjct: 93  AQVLDQNGVRYDFDNSG-AMTVAEDDYFKAKMMLAAQGLPKS-APDGNSMIDSLP-MGAS 149

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--IN 181
             ++      A E ++ARTI++I  +  A+VH+ +     F +   +P+ASVM+R     
Sbjct: 150 RAVEGEKLRSAREMDLARTIEAIDSVETAKVHLAVEPPSVFLRERTKPSASVMLRLAQGR 209

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEI 241
               +   AI HLVA+++P L   D++++D  G+LLT N+       + L++   I+   
Sbjct: 210 QLTQQQVSAIVHLVASSIPELSPDDISLVDQNGRLLTDNDGNA-GDDRQLAMQGKIEDRY 268

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ--RSET 299
             ++   L   LG  NF + V AELN   +Q     Y  D    RS   S  +       
Sbjct: 269 RQSVIALLTPILGDGNFSTEVHAELNFAERQATRETYPQDEARLRSEAGSWASDPRGQGK 328

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD------------------KKEEQ--SNYE 339
            +         N   V         + +                     K EE    N+E
Sbjct: 329 GEASGIPGALSNQAPVDPTVTQTNPNGQAVTQGQTAQAQGPGTPADPLMKTEETFNRNFE 388

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           +  +          ++RLS+AV ++ G   +         +    +A +  +V  A G +
Sbjct: 389 LGREVSVVRDATGTVKRLSVAVALDNGPDGK--------PRSPQEIAALEALVKGAVGFD 440

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
             RGD + ++S  F++     +   +  ++  L+R+ +        L+  LLV F     
Sbjct: 441 QTRGDVVALSSRSFVKEATAETPWYEADWIAPLARNVS-------ALLVALLVIFGIGRP 493

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           L +              +           V    +  +      +N    S    L    
Sbjct: 494 LLKRRAAAQEAAAAERAEQK--------QVIGQAISTELTKQAVANPADPSAPVTLDMIS 545

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559
           ++Y   Q    + + ++ + +R A ++R   +   +++  
Sbjct: 546 STYDYAQRADLIRNFVKQDPDRAALVVRDLLKDAKKEKEN 585


>gi|206895778|ref|YP_002246683.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738395|gb|ACI17473.1| flagellar M-ring protein FliF [Coprothermobacter proteolyticus DSM
           5265]
          Length = 521

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/560 (19%), Positives = 210/560 (37%), Gaps = 46/560 (8%)

Query: 1   MAILDQ--LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M + +   L        +L + +   +  V++V ++      +++N P Y  L+  L   
Sbjct: 1   MNLENIPVLKDLVNFWKNLEKNQKRNIIVVLVVALVAIGGLVYYLNRPQYALLFSDLMPE 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L   N+ +++S +G+SI VP+  V   R+ LA+ GL   S+  GYELFD ++
Sbjct: 61  QAQAIVSQLESQNVRYKLSSDGASIYVPNDKVTSLRLELASSGLV-GSTKPGYELFDNIS 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASV 175
           +  LT   Q+I   RALEGE+ RTI  + G+ +  VH+ +P    +       A+    +
Sbjct: 120 NIFLTQEEQQIMYQRALEGELERTISGMPGVKSVSVHLSLPQRSLWTVTSTQTAQGAVYL 179

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
            ++          EAIR LVA AV  +   +V + +++  +L  +  +  +    L I +
Sbjct: 180 TLKPGYSLSANQVEAIRQLVAHAVEGMSPENVVIAEASTGILAGDLAQSGVDKGYLEIKK 239

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            +       I   L    G +N   +   ++ +  Q I+   +        +  +S    
Sbjct: 240 QLDELYASKIRSFLGQTFGPENIMVSADVDVEVTKQNIQSETW----GNTATKNVSDTES 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD-KKEEQSNYEINTKSIATTHDNYKL 354
            S +S     V    N+P      V         +  +++Q NYEI+           ++
Sbjct: 296 WSSSSSSGGPVGTATNVPGAIPSYVYTSTGEGPYNYYRQQQINYEISRTISEIVPQEVEI 355

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           + + IA +V+     +    ++           +  ++++A G+++ RGD   +TSM F 
Sbjct: 356 KNVKIAAIVDSSVFKDYAVTAST----------VESLIASAAGLDNARGDVALVTSMPFA 405

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                          +   R  A + + +   V  LL+  +    LRR      A     
Sbjct: 406 SLAREKEAQEAQLLAEAQRR--ARLYSYIAIAVVALLILAMVFILLRRSRRTAPAPVPAG 463

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
            G       P         +  +                           K +   +   
Sbjct: 464 AGLGEALGQPRPIISLERPLTPEE-----------------------EKIKLAMEEIQKA 500

Query: 535 IEINEERFAKILRKWARSEI 554
           ++ +    A ++R W + E 
Sbjct: 501 LQEHPNDVADLVRMWMQEEW 520


>gi|222099438|ref|YP_002534006.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359]
 gi|221571828|gb|ACM22640.1| Flagellar M-ring protein [Thermotoga neapolitana DSM 4359]
          Length = 537

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/564 (18%), Positives = 213/564 (37%), Gaps = 51/564 (9%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M + +Q+   +K       S+ R R  ++  +    I+  +       +PHY  L   L 
Sbjct: 5   MNLFEQIKNLWKKIFDLWNSMPRERRFLVGGIAAALIISIVLFAIIAATPHYRLLVAGLS 64

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L E NI +++S  G  I V     V + R+ LA++G+    +  G+ +  
Sbjct: 65  EEEAGTIIQKLEEMNIPYKVSP-GGDIYVSDKYNVYELRMKLASEGI-LGGTRQGFSILS 122

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPT 172
           + + FG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +      R +
Sbjct: 123 ENS-FGATSFDKQVKYQIALQQELERSIMTIRGVKDARVHLVLPKYTYYVRGEMAEPRAS 181

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229
             V++        +    I  LV+ AV  L   +V V+D+  + L+     + E  +   
Sbjct: 182 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLESDEETFLASS 241

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            L + Q ++   E  + KAL +  G           LN    +     Y+  ++ E  +R
Sbjct: 242 KLELKQQLEKYYENKLKKALESVFGPGRVEVIPDVSLNWTKIETEMKRYEAPARREGLVR 301

Query: 290 LSKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             +       + P     V  E N+P +S   V    +    ++    +NYE+N      
Sbjct: 302 SQETETERSQNLPVSGGEVGTESNIPPLSYPSVSGEGTS-TYERTHTITNYELNEIYQKI 360

Query: 348 THDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-T 405
             ++  ++  LS+AV++           S      +++   IN +V    G  +     +
Sbjct: 361 LQNHEGEISSLSVAVII--------DASSTVLQSNNNWNDVINDLVEKGIGSVTSSASFS 412

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + +  + F    +  +   ++  +    R     +   +    T L+ ++ +  +RR+  
Sbjct: 413 VAVAFLPFDRT-IERTLQRELEQIQARKRFTMYSLGIAILGFLTFLLMYILIVQIRRIRA 471

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
              A++     +  +             +  +   L    +++                 
Sbjct: 472 RKLAEERRRKLEEEIKEVLQEEMKEEKELSPEEKELMELIEELE---------------- 515

Query: 526 QSDLRLLHMIEINEERFAKILRKW 549
                  ++   +    A+I+R W
Sbjct: 516 -------NIFSRSPADIAEIVRLW 532


>gi|239826613|ref|YP_002949237.1| flagellar MS-ring protein [Geobacillus sp. WCH70]
 gi|239806906|gb|ACS23971.1| flagellar M-ring protein FliF [Geobacillus sp. WCH70]
          Length = 527

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/570 (18%), Positives = 214/570 (37%), Gaps = 66/570 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + + L +F        + +  I  + + + +++   A +F     +  LY  L   +  +
Sbjct: 5   LKEWLSRFTLFWKERTKKQKWIAIASLALFLLITGVAIYFATRTEFAPLYSNLTPQEAGQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L +  +   ++DNG++I VP  +V   ++ LAA+G+P+S     Y  F K  SFG+
Sbjct: 65  IKATLDQRGVKSEVADNGTTIKVPKELVNSLKVDLAAEGIPNSG-TIDYSYFGKNASFGM 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181
           T     + ++ A++ E+A  I+SI G+  A+V I +P    F        +AS++++   
Sbjct: 124 TDNEFNVVKLEAMQNELANLIKSIDGVEDAKVMINLPQPSVFASDDQGEASASIVLKTKP 183

Query: 182 PS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQ 235
                 +   A+ HLV+ +VPNL   ++ +++   +       E    G        I +
Sbjct: 184 GYQFSDQQIRALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNNENFSTGTTFATQQEIKK 243

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRL 290
            I+ +I+  + + L   +G D    +V A+++   +   E +  P     +  +  S++ 
Sbjct: 244 QIERDIQRQVQQMLGTMMGQDKVVVSVTADVDFTQENREENLVAPVDEKNNEGIAVSVQR 303

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            K+    + +QP       +N   V   +     +  + ++ EE  N E+N         
Sbjct: 304 IKETYSGKGAQPGGVAGTGEN--EVPSYQAGASETNGDYERTEETINNEVNKIKKHIVES 361

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-------INSRRG 403
            YK+  L I V+V           S  Q  ID     +  IV  +          +    
Sbjct: 362 PYKIRDLGIQVMVEPPNPKNPN--SLPQQTIDDIQKILGTIVRTSINKQDGQTLTDQDIQ 419

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           + I ++   F     F      +                +V  +G +L+  L +   RR 
Sbjct: 420 NRIVVSVQKFNGKPTFTEPKQTIPMW-----------VYIVGGIGLVLLIALLILLWRRR 468

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
              ++ ++ ++    +   P I                                  N   
Sbjct: 469 KEEEEEEEEDILEPMVQEIPDIHEE-------------------------------NETE 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
           S     +L  + +   + FAK+LR W   E
Sbjct: 498 STMRRKQLEKLAKEKPDEFAKLLRTWLSEE 527


>gi|58038899|ref|YP_190863.1| flagellar MS-ring protein [Gluconobacter oxydans 621H]
 gi|58001313|gb|AAW60207.1| Flagellar M-ring protein FliF [Gluconobacter oxydans 621H]
          Length = 482

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 117/479 (24%), Positives = 210/479 (43%), Gaps = 18/479 (3%)

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            VP   V +AR+ LA  GLP S  + GYE+FDK NSF  T F Q I   RALEGE+ R+I
Sbjct: 1   MVPDDDVARARLLLAQSGLP-SGGSVGYEIFDKGNSFTATQFEQTINETRALEGELERSI 59

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPN 201
           + I G+  ARVH+V+     F        ASV++          +S  A+ +LV+AAVP 
Sbjct: 60  RLIHGVRNARVHLVLRHRELFSTDEQNAQASVLLSMDGGRRLDEESIAAVVNLVSAAVPG 119

Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA-IQHEIEMNINKALAAFLGVDNFRS 260
           LD  +++++D+ G +L       +  G+S    +  I+  I   +   L + LG  + R 
Sbjct: 120 LDAHNISLIDNRGHVLLKQGEGNSNGGQSAEEQRQLIEQRIAREVEDLLGSSLGPGHVRV 179

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
                +N D  +  +  YDPD +V RS +     ++S  +Q  +  TV  N+P+ +    
Sbjct: 180 EANVTMNNDHVRETQENYDPDQQVLRSQQT--KTEKSINTQGSTNTTVSNNLPNANA--- 234

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
              ++   ++++E+ +NYEI+        D  ++ R+S+AV+V+    ++  G ++ Q +
Sbjct: 235 GQQQNGSQSNRQEQTNNYEISKTVRTLVQDQPRIARISMAVMVDGISQSDGKGHASWQPR 294

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               L  +  +  +A G +  RGD +T+ SM F +  +                +    I
Sbjct: 295 NQEELGRLTALTKSAVGFDQSRGDVVTVMSMKFTDMDMEMKPETSGWSKFFTHSNQMEAI 354

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
              +F     +V F  +  L R      + K      S    P +  +    +   D+ +
Sbjct: 355 RFGLFAACLAMVLFFVVRPLLRPIGEPSSGKLLNFAASKDRTPAVDLSSQGAVYLPDSQS 414

Query: 501 LDSSNQDIFS---------HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
             +    + +               S +   +   S  +++ ++E +      ++R W 
Sbjct: 415 ERARTPMLEAAYVNAEPVDEETVSVSGVQGRIRASSVQKVVDLVETHPSESIALVRGWL 473


>gi|20807889|ref|NP_623060.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516454|gb|AAM24664.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Thermoanaerobacter tengcongensis MB4]
          Length = 503

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/561 (18%), Positives = 199/561 (35%), Gaps = 70/561 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +I +   Q         + + + L  + ++  +      +  N P+Y  LY  L + D  
Sbjct: 4   SIANFREQLLNFWNKFDKKQKIQLTVIAILVFISISLLVYIANRPNYVVLYSNLSLKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L     + +++SDNG++I VP+    + R+ LA +G+P    +    +    NS 
Sbjct: 64  IVVEKLKSDFKVPYKLSDNGTTILVPAQYKDEIRMKLATEGIPQGGFSFQDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  ++ EI  ++++I G+  A V+IV+PD  +F        A     + 
Sbjct: 121 STTDQERRQKYLYFVQNEIQNSLKTIEGVQDAIVNIVVPDQNAFVLSNTTNQATAAVMLT 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQ 235
           ++          + I   V+ +V  L   +VTV+DSTGK+LT              ++ +
Sbjct: 181 LKPGATLTPSQVKGIIDFVSKSVEGLKPENVTVIDSTGKILTPESDSIAENASNQFALQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q +++ ++   L    G  N        LN D +    I Y P   +        + +
Sbjct: 241 KVQEDLQNSLQTLLEQVFGPGNVVVRANVRLNFDKKTEDRIEYTPVQGNDNKGIVRSVQE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++  +Q  S      N P V         +  + DK E   NYEIN           
Sbjct: 301 LKEKATGTQSGSPPGQPTNNPPV---YNQQNNNTSSYDKTETTINYEINQIKTTLVEAQG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+E +S+AVVVNK                 S   +I  +V+ A G     G+ + ++   
Sbjct: 358 KIESISVAVVVNK-------------PLNASMQQQIADLVANAAG-----GNNVKVSVQG 399

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
              NQ           +      +   I A + + G L+   +     R+   +    + 
Sbjct: 400 IPFNQDLLKAMQAQKKVAQGMPIYLWGIIAALAVGGGLVAFLMIRR--RKTKEVIPPAEE 457

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           EV   +      + +                                      +   ++ 
Sbjct: 458 EVLATAEPVEEIVITE-----------------------------------KDEKKKQIE 482

Query: 533 HMIEINEERFAKILRKWARSE 553
            +I    +   +++R W   E
Sbjct: 483 KLIREKPDIVVQLIRTWLNEE 503


>gi|256750740|ref|ZP_05491625.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750323|gb|EEU63342.1| flagellar M-ring protein FliF [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 503

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 202/561 (36%), Gaps = 73/561 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + + + L  + ++  +      + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTDFWNKF---DKKQKIQLGIIAILLFIGISLLVYLVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L     I ++IS++G++I VP     + R+ LA +G+P    +    +    NS 
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPVQYKDEVRMKLATEGIPQGGFSFQDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASVM 176
             T   +    +  L+ EI  ++++I G+  A V+I +PD  +F        A     + 
Sbjct: 121 ATTDQERRQKHLYFLQNEIQNSLKTIDGVQDAIVNIAVPDQNAFVLSNTTNQATAAVMLT 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235
           ++          + I   V+ +V  L   +VTV+D+ GK+LTA             ++ +
Sbjct: 181 LKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDSTAENANTQFTLQK 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q +++ +I   L    G  N        LN D +    I Y P   +        + +
Sbjct: 241 KVQEDLQNSIQTLLEQVFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQE 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +++  +Q  S      N P V            + ++ E   NYEIN    +      
Sbjct: 301 LKEKATGTQGGSPAGTATNNPPV---ISTTGNGTSDYNRTEITINYEINQIKTSLVQAQG 357

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+E +SIAVVVN             Q   +S   +I  +V+ A G +S     +++  M 
Sbjct: 358 KIENISIAVVVN-------------QNLNNSMKQQIADLVTKAAGGDSLV--QVSVQGMQ 402

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++         +          +  +   V+ +   LV   GL  +       +    
Sbjct: 403 FNQD---------LLKTMQQQAKASKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLT 453

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               + + +  P                                  I+     +   ++ 
Sbjct: 454 TAEQEVLATVEPTYE-------------------------------IDFSDKDEKKKQIE 482

Query: 533 HMIEINEERFAKILRKWARSE 553
            +I+   +   +I+R W   E
Sbjct: 483 KLIKEKPDIVVQIIRTWLNEE 503


>gi|295399809|ref|ZP_06809790.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111679|ref|YP_003989995.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1]
 gi|294978212|gb|EFG53809.1| flagellar M-ring protein FliF [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216780|gb|ADP75384.1| flagellar M-ring protein FliF [Geobacillus sp. Y4.1MC1]
          Length = 529

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/574 (18%), Positives = 208/574 (36%), Gaps = 66/574 (11%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   +   L +F        + +  I  + + + +++  A  FF        LY  L   
Sbjct: 1   MNDRLKKWLNRFTLFWKERTKKQKWIAVASLALLLLIIGATVFFATRTEMVPLYSNLTPQ 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +  +I   L + NI   ++DNG++I VP  +    ++ LAA+G+P+S     Y  F K  
Sbjct: 61  EAGQIKETLDQRNIKSEVADNGTTIKVPKDLADSLKVELAAEGIPNSGM-IDYSFFGKNA 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI 177
           SFG+T     + ++ A++ E+A  I+SI+G+  A+V I +P    F        +AS+++
Sbjct: 120 SFGMTDNEFNVVKLEAMQNELANLIKSINGVEDAKVMINLPQPSVFASDNQGEASASIVL 179

Query: 178 RAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SL 231
           +         +  +A+ HLV+ +VPNL   ++ +++   +       E+N  G       
Sbjct: 180 KTKPGYQFSDQQIKALYHLVSKSVPNLPTDNIVIMNQFFEYFDLKNDEKNSTGTTFAAQQ 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVER 286
            I Q I+ +I+  + + L   +G D    +V A+++   ++  E +  P     +  +  
Sbjct: 240 EIKQQIERDIQQRVQRMLGTMMGQDKVAVSVTADIDFTQERREENLVAPVDEENNEGIAI 299

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S++  ++      + P        N                  ++ EE  N E+N     
Sbjct: 300 SVQRIQETYSGNGAPPGGTAGTGANEVPNYQAGANEANGN--YERTEETINNEVNRIKKN 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GIN 399
                YK+  L I V+V      +    S  Q  ID     +  IV  +          +
Sbjct: 358 IVESPYKIRDLGIQVMVEPPDPKDPN--SLPQQTIDDIQKILGTIVRTSIDKQYGQTLTD 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
               + + ++   F     F      +             I   + LV  + +  L   +
Sbjct: 416 QDIQNRVVVSVQKFNGKATFEEPKPAIPMW--------VYIVGGIGLVLLITLFILWWRS 467

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
            +     ++ ++       +   P I    T   M                         
Sbjct: 468 RKSDEEEEEEEEEIFEQPMVQEIPDIHEQETESTM------------------------- 502

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     +L  + +   + FAK+LR W   E
Sbjct: 503 -------RRKQLERLAKEKPDEFAKLLRTWLSEE 529


>gi|126462456|ref|YP_001043570.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
 gi|126104120|gb|ABN76798.1| flagellar M-ring protein FliF [Rhodobacter sphaeroides ATCC 17029]
          Length = 570

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 116/566 (20%), Positives = 218/566 (38%), Gaps = 33/566 (5%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           +  +L   +        R  + A +IL   +L +A    +  P    LY  L  ++  R+
Sbjct: 21  MRGMLDQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARV 80

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
             +L+   I   I +    ++VP +   +AR+ LAAQGLP      G  L   +   G +
Sbjct: 81  IDSLTGGGIAAVIDERTGEVAVPGADYHRARMLLAAQGLPQ-GLPDGNALLSDLP-MGTS 138

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPS 183
             ++     +A E ++AR+I  IS + AARVH+ +P+  +F +    P ASV ++ +   
Sbjct: 139 KSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGR 198

Query: 184 VYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQH 239
                  EAI +LV+++VP +   DVTV+D  G+LL+    +    +  + L     ++ 
Sbjct: 199 TLDGAQVEAIVNLVSSSVPGMARQDVTVVDQMGRLLSRGSDDPAVLLNDRQLQHRVQLET 258

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
                I   L    G  N    V  +++   Q+IRE   DPD     + +     + +  
Sbjct: 259 LYRNRIESLLTPIAGPGNLAVQVTIDMDFTRQEIREEQVDPDRTALLAEQS--QIEETAD 316

Query: 300 SQPESAVTVEQNMPHV--------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            Q         N P                   +   +  +    N+E++ K   T    
Sbjct: 317 PQARGIPGAVSNSPPPEAALEAGAPPTAAGEAATPMRSRSQNSTRNFEVSRKIETTLPAT 376

Query: 352 YKLERLSIAVVVNKG--RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
            ++ R+S AVVV                    ++  A++ ++  +A G ++ RGD +TIT
Sbjct: 377 ARVARVSAAVVVRAQPQPAATDPAAPPPPLLPEALKADLERLTRSAVGFDADRGDVVTIT 436

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  FL+  +  +               A +      L    +V    +  +      +  
Sbjct: 437 AQPFLDTVVPEASG------WSAEPWLADLARQGFLLAALAVVALGVVRPIL-----NRV 485

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                     L     +  V  G   +D  A   + Q   + +    +R      ++  L
Sbjct: 486 LLPAPAAAGALPLGETAVEVGEGESLDDVRARLKARQGALTKNMLDAAR----SHEEQIL 541

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
            +  ++E +E R A  +R+   +E++
Sbjct: 542 VIRKLVEEDEGRIATTIRQMIAAELD 567


>gi|157414615|ref|YP_001481871.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385579|gb|ABV51894.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747255|gb|ADN90525.1| Flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           M1]
 gi|315931604|gb|EFV10570.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           327]
          Length = 560

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 222/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q +   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV             +  +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|283955204|ref|ZP_06372705.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414]
 gi|283793241|gb|EFC32009.1| flagellar M-ring protein [Campylobacter jejuni subsp. jejuni 414]
          Length = 560

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   +   Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMFHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGGNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG TS  Q++   RA+EGE+ARTI+++  I  A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATSEEQKVKYQRAIEGELARTIETLEPIRNAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++          
Sbjct: 298 EEKTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNIKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
              +     + +   P          +   N A     + +       +  I     +  
Sbjct: 472 L--EDVAAQEEMQQGPSAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQ---YEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|118475241|ref|YP_891471.1| flagellar MS-ring protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118414467|gb|ABK82887.1| flagellar M-ring protein FliF [Campylobacter fetus subsp. fetus
           82-40]
          Length = 568

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 111/572 (19%), Positives = 229/572 (40%), Gaps = 28/572 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS------PHYDNLYVK 54
           M       Q  +   +L   + ++ AS +++ +   +    + +S        Y  L+  
Sbjct: 1   MDYKTLFHQVGQLYQNLTLKQKIVAASSVVIVVGFLVFLSLYKSSSSGSEYDGYSILFRN 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114
           L  +D  +I   L +  + +++++ G +I VP+  V K RI +A+ G+     N G+E+F
Sbjct: 61  LNPADSAQIIAQLEKDGVTYKLANEG-TILVPTKSVYKERIAVASLGIMKDGKN-GFEIF 118

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           DK + FG T   Q +   RA++GE+++TI+ +  I  A V+I  P    F +    PTAS
Sbjct: 119 DKQD-FGATDNEQRVKFQRAIQGELSKTIEGLEPIEKATVYIAFPKDSVFTERQVPPTAS 177

Query: 175 VMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKS 230
           V+++         K  + I+ +VA +V NL   DV ++   G  +  +E  +E  ++   
Sbjct: 178 VVVKIKDGEKLNRKQIDGIKRIVAGSVTNLKAEDVKIVTQDGVAVGDDEIALESELVASQ 237

Query: 231 LSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
           +   +  ++  E  I   +  F  G D   + V  E +   +  +  +YDP+S +     
Sbjct: 238 IKYKKEFENTYEQKIIDMIGKFTGGRDKVTAKVSIEFDFSVKDSQSEIYDPNSVIRSEQN 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           + +  +  +  +         N+  V       P   E   K    +NYEI+ K I    
Sbjct: 298 IEEKREGKQPKEVGGVPGAVSNIGPVEGLDQNKPD--ELYTKNVANTNYEISKKIIKVKD 355

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRS------ADQGKIDSYLAEINKIVSAATGINSRRG 403
               ++R++ AVVV+     E           A     +  + +I  +V    G NS RG
Sbjct: 356 QYATIKRVTAAVVVDGKYEREKKEDGSLSDTIAYVPLSEDEINKIKSLVEQTIGYNSTRG 415

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D +T+++ +F +    N+ T ++         + + +  L  ++  L+V  +     +++
Sbjct: 416 DEVTVSNFEFKKAGNLNANTTKIGIF------YDSYLKPLTPIIKYLIVLLILFVFYKKV 469

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 K  E        P    S +             +  +             +   
Sbjct: 470 ITPFLQKMVENAKDEDFEPQKEESNIEEEAEDTLEKFKAARKRVEDELGIGEDFNEDELK 529

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            +    ++  ++    E  + +L+   +++ +
Sbjct: 530 YEVLLEKMKLIVSERSEEISTLLQGMIKNDSD 561


>gi|332799173|ref|YP_004460672.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1]
 gi|332696908|gb|AEE91365.1| flagellar M-ring protein FliF [Tepidanaerobacter sp. Re1]
          Length = 519

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 113/568 (19%), Positives = 221/568 (38%), Gaps = 64/568 (11%)

Query: 1   MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M    +L  Q  +   S  R + + +   ++V I++     + ++ P Y  LY  L++SD
Sbjct: 1   MDYFQKLKHQVVEFWQSRDRAQKVKIIVSVIVVIVILGIMLYLISRPKYVPLYTNLDISD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L + NI + + D G +I V      K R+ LA +GLP S+S SG++       
Sbjct: 61  AGEIVKKLDDLNISYELEDGGKTILVDPEQKYKTRLTLAQEGLPKSNS-SGFDEMFNKTR 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMI 177
            G T + +++   +AL+GE+ + I+ +  + +ARV+IV  +   F +  +   P+A++ +
Sbjct: 120 LGTTDWERQVQYNQALQGELTKAIEMMESVESARVYIVQQEKSLFIEPDSNYEPSAAIFL 179

Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKS 230
             +       +    I +LV  +V N+   +V V+D  GK L     + +E    ++   
Sbjct: 180 EVKPGAQMTKEEIMGIINLVTYSVKNMKQENVVVVDQYGKTLSNAAISQSEDNEELINNQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVE 285
           L I    Q++++ ++   L    G  N    V A+LN D + ++  ++ P        + 
Sbjct: 240 LVIQDNFQNQLQASVQSLLEQIFGPGNVAVRVNAKLNFDKKIVQNKLFAPVNEETGEGIV 299

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
           RSI+  K+              V+ N+P  +              + E   N+EIN  + 
Sbjct: 300 RSIQELKEHFSGTGGAYGGTPGVDSNVPGYN----QTQTGESEQQRSEVIRNFEINETNE 355

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
             T     +++L+++VV+N             Q   D+    I ++V  A G +  R D 
Sbjct: 356 NLTVAPGAVDKLTVSVVIN-------------QELNDAEKDSITQVVGNAIGYDPER-DQ 401

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           I+I  M+F  +                +R     I     ++  +L   +    L R   
Sbjct: 402 ISIEGMEFKNDMAKFFADEMARQQKEQAR--MRNIKIAGLILSIILAFIIIRMFLNRRKA 459

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
           I + +K      ++       +   +  +                               
Sbjct: 460 ISEEEKISEEMLAMQQAAATQTQDESQEIKE----------------------------S 491

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               ++  +     E  AK+L+ W + +
Sbjct: 492 SFYDKIEKLARRKPEEVAKVLKTWLKED 519


>gi|57237369|ref|YP_178382.1| flagellar MS-ring protein [Campylobacter jejuni RM1221]
 gi|86153720|ref|ZP_01071923.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|57166173|gb|AAW34952.1| flagellar M-ring protein FliF [Campylobacter jejuni RM1221]
 gi|85842681|gb|EAQ59893.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|315057739|gb|ADT72068.1| Flagellar M-ring protein fliF [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 560

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV             +  +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|258514003|ref|YP_003190225.1| flagellar MS-ring protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257777708|gb|ACV61602.1| flagellar M-ring protein FliF [Desulfotomaculum acetoxidans DSM
           771]
          Length = 512

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 212/561 (37%), Gaps = 59/561 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M   + L +  +   SL + +   +       +   +    F+    Y  L   LE  D 
Sbjct: 1   MTPRELLDRLKQRWQSLSQVKKAFVIIAGTGILAATLYLITFLTQTSYTPLMTNLEPRDA 60

Query: 61  NRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
             I   L      DF+++D G++I VP   V + RI LA+ G+       G+ELFD+   
Sbjct: 61  GAIEEKLKSLKYEDFKLADQGTTIMVPKEQVYEIRIKLASSGV-LQGGGLGFELFDQNQ- 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G++ F Q++   RAL+ E+ RTI  +  +  ARVH+V+P    F       + S+ ++ 
Sbjct: 119 MGVSDFEQQVDYQRALQEELRRTIIQLEEVEQARVHLVLPQKSVFVDEQEPASVSIALKL 178

Query: 180 INPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSL 231
              +    +  + I  L   ++  L + +V ++D  G +L+       +E    ++ K  
Sbjct: 179 KPLAKLKPEQVKGIADLAVGSIQGLKLENVHIIDMQGHILSDTIDTENDEDSSQVINKQQ 238

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            + +  + E+E  I   L   LG D   S V AE++ + Q+I    + P        +  
Sbjct: 239 QVRREYEKELEKRIQNVLDRVLGTDKAVSMVTAEMDFNKQEINTTTHGPG-------QKV 291

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +   +E SQ      V       +        ++E+  + E  +NY+++T         
Sbjct: 292 SEQLINEKSQGTGLGGVTGTDAQNTQTYPTGTDNVESASRDESITNYQVDTTQQKVVQPP 351

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             +++LS +VVV+                  + + +I  +VS A G +  RGD I +T++
Sbjct: 352 GTIKKLSTSVVVDGK-------------LSATRIQQIESLVSTAIGYDQARGDQINVTNI 398

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F +    +    ++   + L+            + G ++   +    +  +      ++
Sbjct: 399 AF-DTSYQDKMQAEMGKEETLAAQKQRQQLIYFAIAGAVIFLIMSAFLIAYMRRRRRQQQ 457

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            +   +SI S   +                              +  +          ++
Sbjct: 458 EDTLEESIKSVQDLIEE---------------------------EQELEVKYIDVKHDQI 490

Query: 532 LHMIEINEERFAKILRKWARS 552
             + +   +  A+IL+ W   
Sbjct: 491 KKLAKERPQDIAEILKIWLSE 511


>gi|86151498|ref|ZP_01069713.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841845|gb|EAQ59092.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 560

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV             +  +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQDPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|152965616|ref|YP_001361400.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216]
 gi|151360133|gb|ABS03136.1| flagellar M-ring protein FliF [Kineococcus radiotolerans SRS30216]
          Length = 537

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/555 (18%), Positives = 212/555 (38%), Gaps = 33/555 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AI++    F     +    +  ++ +V++  +   +    + ++P Y  ++  L  +D N
Sbjct: 9   AIVENAKNFVSGFRTFSTGQKAVVIAVVVALLGGAVLFSRWASTPSYTPMFSNLSGADAN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L    + ++++DNG++I VP+ +V   R+ ++  GLP+  + SGY L  +     
Sbjct: 69  AMVEKLDADGVPYQLADNGATILVPADVVDSERLAMSGAGLPAD-TGSGYTLLTE-QKVT 126

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + FMQ+ T  + L+GE+  TI+SI G+ +A V++ +P    F       TASV+++   
Sbjct: 127 TSEFMQQKTYQKVLQGELESTIESIDGVESAVVNLAIPQKDVFLDEQDPTTASVLVKLRP 186

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                     +I +LV+  V  +D  +V+V+D  G  L+    + +              
Sbjct: 187 GKELSNDQVTSIVNLVSGGVEGMDPANVSVVDDKGNTLS---TDGSGSSAQQEKTSDYNA 243

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRSE 298
               ++   L +  G  N ++ V A LN D +      Y  P      +   +++     
Sbjct: 244 SASADLQTFLESVYGKGNVKATVKATLNYDDKTESSTTYSQPQEIDPLAEAKTEETYEGT 303

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           T    + V    N+            +     KK E +N  IN     T     KLE+ +
Sbjct: 304 TGAAATGVLGPDNI----AVPGGDAENGGGYAKKSETNNNAINKIDTVTKQAPGKLEKQT 359

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT-SMDFLENQ 417
           ++VVVN G                + + +I +IV+ A GI++ RGD++++  +       
Sbjct: 360 VSVVVNAGAKGAA---------GAADVNQITQIVNQAAGIDATRGDSVSVVKTAFDDTAA 410

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +  +  +                   +  L++  + L A RR              +
Sbjct: 411 AEAAAALAAADEADQQTTLIGYAKTAALGLLVLIMLVVILVAFRRRKVETVDVLDVEPLQ 470

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                           +    +AL+++  D    +                  ++ ++  
Sbjct: 471 LGDITGLDEELKEIAPVVERPVALEAAPVDPALEAA-----------AARRTEVVELVSR 519

Query: 538 NEERFAKILRKWARS 552
             E  A++LR W   
Sbjct: 520 QPEEVAELLRGWLAD 534


>gi|121612614|ref|YP_001000028.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167004986|ref|ZP_02270744.1| flagellar MS-ring protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87250495|gb|EAQ73453.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 560

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 114/573 (19%), Positives = 223/573 (38%), Gaps = 27/573 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRVQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  V     L+
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPNPIVRSEQTLN 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           ++    +  + +       N+  V          ++   K +  +N E++     T    
Sbjct: 298 EERTGRKDPEIQGVPGAVSNIGPVEGL--DNKGQIDTYKKNQVTTNNELSKTITNTKKQF 355

Query: 352 YKLERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             + R S AV ++             +S         LA +  IV      ++ RGD++ 
Sbjct: 356 ATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEELASVESIVKNTINFSATRGDSVV 415

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + ++ F    +     V+  +    +R     I  + + +  +L+       +       
Sbjct: 416 VQNLPFHRESIRVESKVKTFY----NRFVEPFIPPVKYFIAAILLFIFYKKVIAPFTQKM 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                     +        +AV             +  +             +S   +  
Sbjct: 472 LE-----DVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEEQLGFGDNFNEDSIQYEVL 526

Query: 528 DLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
             +L  ++    E  A +L+   +++ E     
Sbjct: 527 LEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKD 559


>gi|330889061|gb|EGH21722.1| flagellar MS-ring protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 428

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 95/403 (23%), Positives = 163/403 (40%), Gaps = 40/403 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
           L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L
Sbjct: 24  LSFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTL 83

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
           + ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+
Sbjct: 84  TAANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFME 143

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVY 185
                R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++          
Sbjct: 144 ATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEP 203

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEM 243
               AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +  
Sbjct: 204 SQVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQ 263

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE 303
            +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +S   
Sbjct: 264 RVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSSS-TG 322

Query: 304 SAVTVEQNMPHVSDRKVPLPRSL-----------------------------------EN 328
                  N P           +                                      
Sbjct: 323 GVPGALSNQPPGPATAPQNATAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPA 382

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
             + +   N+E++     T     +L RLS+AVVV+    T  
Sbjct: 383 DKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNA 425


>gi|330862343|emb|CBX72503.1| hypothetical protein YEW_GP28340 [Yersinia enterocolitica W22703]
          Length = 519

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/536 (19%), Positives = 217/536 (40%), Gaps = 31/536 (5%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
                + +   +    + +S  Y  L+   E   V ++   L    I +RI+ +   I V
Sbjct: 1   MGAAAILVTGAIIFSLWRSSQGYTALFGSQEHIPVTQVVEVLDGEAIAYRINPDNGQILV 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
             + +G+A I LAA+G+ +++  +GYEL D+    G + F+Q +   R+LEGE+A++I +
Sbjct: 61  AENQLGRACILLAAKGI-TATLPTGYELMDQETMLGSSQFIQNVRYKRSLEGELAQSIMA 119

Query: 146 ISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           ++ +  ARVH+ M +  SF    +  +  +  + ++           AI  LVA ++P +
Sbjct: 120 LTSVDYARVHLGMSEASSFAISNRSESSASVILRLKYGQTLKADQVGAIVQLVAGSIPGM 179

Query: 203 DMGDVTVLDSTGKLLT----ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
              +V V+D  G+LL+    AN      +     +   +Q   E +I   L++ +G +N+
Sbjct: 180 KAANVRVVDQHGELLSEAYQANGKGMTNVKNGAELAHYLQSTTEKSIANLLSSVVGANNY 239

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
           R +V  +L++   +     Y       R    +   +               N P    +
Sbjct: 240 RISVATQLDLSRVEETLERY---GAEPRVSDENIQQENGNEDMAMGIPGSLSNQPAAQPK 296

Query: 319 KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378
               P ++    + + Q  Y  +       H  +KLE++++AV++NK          A +
Sbjct: 297 NANAPAAM---SRSQAQRKYAYDRDIRHVRHPGFKLEKMTVAVILNKSA-------PALE 346

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 L E+ +++  A GI+++RGD++T+  + F    L +   +         R    
Sbjct: 347 KWTPEQLNELKRLIEDAAGIDAKRGDSLTLNMLAFTVPTLIDEPVIAWWQDATTFRW--- 403

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
            +      + +LL    G+  L    +  D K   +     +    +++  +      ++
Sbjct: 404 -VEIAGIGLLSLLFLLFGVRPLMARLSRRDDKHSALAMAENIDGLNVTNTTS------ES 456

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
            A         S   +          +     L  + +   ER A+++++W  +  
Sbjct: 457 SATTEPMLPGSSFKEDDNLPPQGSGLEIKISHLQQLAQSETERVAEVIKQWINNNE 512


>gi|323225205|gb|EGA09449.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 366

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 13/338 (3%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSATVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMPHVS-----DRKVPLPRSLENTDKKEEQSN 337
                 N P               ++ +NT +    +N
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNTPQTSTSTN 349


>gi|256833241|ref|YP_003161968.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603]
 gi|256686772|gb|ACV09665.1| flagellar M-ring protein FliF [Jonesia denitrificans DSM 20603]
          Length = 534

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/552 (20%), Positives = 217/552 (39%), Gaps = 28/552 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +   + F +       +  +    +   I+  +A   +   P    LY  L  +D  
Sbjct: 4   QITNVFTRLFSAIREFTVAQRTLALIGLAGVIVALVALAMWATRPQMQPLYTDLAPADAA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+   + +++++ GS+I VPS  V   R+ +A+ G+ S S+  GY L D      
Sbjct: 64  AIVDQLAANGVQYQLTNGGSTILVPSGQVYDQRLKVASSGI-SPSAEGGYSLLDN-MGMT 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + F Q +T  RALEGEIA+TI +++GI  A V + MP+   F    A PTASV ++   
Sbjct: 122 SSDFQQNVTYKRALEGEIAKTITAMNGIEVASVQLAMPEDTVFVSQSADPTASVFVKPKA 181

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                     AI   V+AAV  + + +V V+DS G++L+A        G +L   Q  + 
Sbjct: 182 GVTLADDQVAAITQFVSAAVEGMKVENVAVIDSDGQVLSAMG-GSGTHGTNLKETQQYEQ 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            I  ++   L   LG      +V AEL+ D  +     YD +             + + T
Sbjct: 241 RIAASLQGMLDRILGNGMAVVSVTAELDFDATERVSESYDSNEDALPLTERETTEEYTGT 300

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
                 +          +  VP  ++  N      + N  ++  +         + R S+
Sbjct: 301 GNAAGVLG-------PDNIAVPEGQTDGNYTNTSSERNNAVDKTTERIVTAPGTVRRQSV 353

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           +V V++     +             + ++  +V+AA GI+  RGDT+T+T M F +    
Sbjct: 354 SVAVDQQAAATIN------------INDLQAMVTAAAGIDEERGDTVTVTRMAFDDTTAQ 401

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            +     +     +      +   + +    LV+ + L  +       +    +V  +++
Sbjct: 402 AAAEALTAAEAEAAEAAQMEMYRNLGIAAIALVSIIALSIVAAARRRRNRMPQQVEQEAL 461

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                  + V       +   L+         + + ++       +     ++ + + + 
Sbjct: 462 DLGEVELAPVPAYNAAAELEQLEFPEMPELPAAPDDKALRAEKKRQD----VVTLADEDP 517

Query: 540 ERFAKILRKWAR 551
           ++ A+IL +W  
Sbjct: 518 KQMAEILNEWIS 529


>gi|255523704|ref|ZP_05390670.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|296186708|ref|ZP_06855110.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|255512573|gb|EET88847.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
 gi|296048745|gb|EFG88177.1| flagellar M-ring protein FliF [Clostridium carboxidivorans P7]
          Length = 529

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/566 (18%), Positives = 210/566 (37%), Gaps = 53/566 (9%)

Query: 4   LDQLLQFFKSG----TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           + +L Q FK+       L + + +    +    I   +    +  S  YD L+  +  +D
Sbjct: 1   MGKLSQVFKNLIEKWKGLSKKKKIAFGIIFTAVIGALIYLGIYFGSTKYDVLFSNMSSTD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L    +D ++   G+SI VP   V K R+ + ++ +  ++ + G+EL DK   
Sbjct: 61  SAAVYKQLQADKVDAKVQ--GNSILVPKGQVDKLRMQMLSE-VNMTNGSQGFELLDKT-K 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T    +I   RAL+GE+ RTI+ +  I  ARV +V+PD   F K     +ASV ++ 
Sbjct: 117 LGSTDAEMKINYQRALQGELERTIKGLPEIQNARVSLVLPDDTQFVKDTQPGSASVTLQM 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---------EMERNILG 228
                      +A+  LV+ +V N+   +V ++D    LL+ +                 
Sbjct: 177 KQGQKLNSDQVKALVALVSGSVKNVPKENVQIIDDKLALLSKDLFNDKKDITSDSTTSAE 236

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           K   + Q  + E+E  ++  L A  G D  +  V A+L+ D  Q     YDP     +S+
Sbjct: 237 KQQELKQQYEKELEKKLSNMLEAVYGKDKVKVKVNADLDFDAVQQDSTTYDP-----KSV 291

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            +S+   +  ++  +   T    + +             ++   E   NY+++     T 
Sbjct: 292 VVSEHNVKDTSTGGQGTATSSSPVDNNMTNTTTNNTGNGSSTHDESTKNYDVSEVKQKTI 351

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                ++RL+ +V ++                  +    I+ +  +A G +++RGDTI +
Sbjct: 352 KAPGAVKRLTASVALDGNV-------------DPTTKTSISNLAVSAIGYDAKRGDTINV 398

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
             + F       +     +      +   T    ++ ++  +++       L R    ++
Sbjct: 399 EGIPFDTTLKDQAKKDLDAMNKATDQAKKTKTYIMLGILAAVILGAAVALFLWRRKKREE 458

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            +         +                D I  D                 +       +
Sbjct: 459 EEDLFDEETGGI----------------DVIVGDEMEPTKQQFKYKPVDLESENEQTHVE 502

Query: 529 LRLLHMIEINEERFAKILRKWARSEI 554
             + +  +   E+ A I++ W   + 
Sbjct: 503 NEIKNYAKEKPEQVADIVKSWLAEDE 528


>gi|168187560|ref|ZP_02622195.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund]
 gi|169294591|gb|EDS76724.1| flagellar M-ring protein FliF [Clostridium botulinum C str. Eklund]
          Length = 522

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/564 (19%), Positives = 213/564 (37%), Gaps = 58/564 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I ++          L + + +  + +++  I   +    F+N+  Y  LY  ++ +D   
Sbjct: 4   IKEKFKNLIDKFKGLTKGKKIAFSVLVVGIISGLIYLIVFLNTTKYAVLYKDMDPNDAQT 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L+E  +++++    SSI VP   V + R+ LA Q     S + GYE+ +  +SFG+
Sbjct: 64  VMNKLNEKKVEYKV--ESSSIKVPEDKVSELRLELAPQ---LKSGSKGYEILENADSFGM 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180
           T   +E+    ALEGE+A+ I+S+  +  ++V +VMP  G+F K      ASV I     
Sbjct: 119 TDKERELNYKIALEGELAKNIKSLPEVKDSKVLLVMPQEGNFFKQAENAQASVRIEFNEG 178

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVL--------DSTGKLLTANE--MERNILGKS 230
                +  +AI  LV  +V NL   +V V+        D T  L    +      +  K 
Sbjct: 179 KSISKEQIKAIISLVTGSVKNLKKENVKVIGVVNGQTKDLTEDLFGDEDGKDLTTVTDKQ 238

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
               + ++ E    I   L    G    ++AV  +L+ D  +    V+DP++     +  
Sbjct: 239 NKYKKNLEKEYVKKIMNILTPKYGEG-VKAAVNVDLDFDASEKTSTVWDPNN-----VVR 292

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           S++ ++   +     V+    + +             ++  ++   NYE+      T   
Sbjct: 293 SEETEKDTDTSKGGKVSA-GPVDNNMSNTYNNQDGNGSSTHEKTTKNYEVGKIEQKTVGA 351

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             K++++S +V +N   L+ V               +IN +V+ A   +  RGD IT+  
Sbjct: 352 PGKIKKVSTSVTINDENLSPVD------------KDKINSLVAGAISYDENRGDIITVEG 399

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F E     +        +         I   +      L+   G+ A  R      A 
Sbjct: 400 LKFNEINDAKAEEDAKKQAEEKKAKQKAFIYKCIGGAIVTLLLIAGVIAFIRKRKKKKAN 459

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             E+ G ++L    I        +  D    ++  +                        
Sbjct: 460 NEEIEGINMLIDDEIDPKEELQPINFDEENENTHIE----------------------KE 497

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
           +        ++  +I++ W   + 
Sbjct: 498 IKKYASEKPDQVVEIIKAWMAEDE 521


>gi|317121815|ref|YP_004101818.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM
           12885]
 gi|315591795|gb|ADU51091.1| flagellar M-ring protein FliF [Thermaerobacter marianensis DSM
           12885]
          Length = 560

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 121/514 (23%), Positives = 206/514 (40%), Gaps = 25/514 (4%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
           P ++ L+ +L+ +D   I   L E  + ++++  G +I VP + V + R+ LAAQGLP  
Sbjct: 61  PRWEPLFTRLDPADAAAIVSQLEEKGVPYQLAQGGQAILVPGTEVDRLRLELAAQGLPRE 120

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
               G EL D +   G T F +++  VR L+GE+ARTI  + G+ AARVH+V+P+   F 
Sbjct: 121 G-TVGLELMDSIP-MGATEFERQVQYVRGLQGELARTISRLDGVEAARVHVVLPEDSPFV 178

Query: 166 KIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---- 219
                 TA+V+  ++       +   +I HLVA+AV  L   DVTV+D+TG+LL+A    
Sbjct: 179 GQRRPATAAVLVQLKPGASLAPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAEVPP 238

Query: 220 -NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY 278
                  + G    I +  + E++ ++   L   LG  N  + V AELN D Q I   ++
Sbjct: 239 EEGQGAVVQGDRFEIERRFEQELQQSLQTLLEQVLGPGNVIARVNAELNFDQQVIERHLF 298

Query: 279 DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
            P +   + I  S    +   +     V V  +    +  ++          + E  +NY
Sbjct: 299 QPPADGGQGILRSIQELQETFTGQGVPVGVPGDSNIPTYPQLVGGTG--QYQRTERTANY 356

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398
           EIN            + RLS+AVVVN                       + + V+AA G 
Sbjct: 357 EINEVVDRVQVAPGAVRRLSVAVVVNG-------------DLTPQRQQALQQAVAAAIGT 403

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           + +R D + +  M F +  + +     +            +       V  LL   L + 
Sbjct: 404 DPQRQDQVEVVGMPF-DTSVADRLQQSLDEERQAREQARRMALLAGAAVLALLALGLLVA 462

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
             RR      A      G   +    +  A              +      +        
Sbjct: 463 VWRRRRAARRAAAEAQMGGLGVPVQGMPGAGGLPGAVPPAAPAGAGAVGGPAAGAAAAWA 522

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                   +  ++  +++   E  A+++R W   
Sbjct: 523 NGRAADAAAYDQVAELVKNQPEHVAQVIRSWLAE 556


>gi|313901521|ref|ZP_07834968.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM
           13965]
 gi|313468216|gb|EFR63683.1| flagellar M-ring protein FliF [Thermaerobacter subterraneus DSM
           13965]
          Length = 551

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 117/519 (22%), Positives = 204/519 (39%), Gaps = 29/519 (5%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           + P +  L+ +L+ +D   I+  L E  I F+++  G +I VP+  V + R+ LAAQGLP
Sbjct: 48  SGPQWAPLFTQLDPTDAAAIAGQLEEQGIPFQLAQGGQAILVPAEQVDRLRLDLAAQGLP 107

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                 G EL  +    G T F +++  +R L+GE+ARTI  + G+ AARVH+V P+   
Sbjct: 108 RQG-TVGLELL-ENMPMGATEFERQVQYLRGLQGELARTIGRLEGVEAARVHVVRPERSP 165

Query: 164 FRKIGARPTASVM--IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--- 218
           F       TA+V+  ++       +   +I HLVA+AV  L   DVTV+D+TG+LL+   
Sbjct: 166 FVSQQRPATAAVLVQLKPGAELEPEQVRSIMHLVASAVEGLKPEDVTVVDTTGRLLSAGV 225

Query: 219 --ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
             A E    + G    + +  + E++ ++   L   LG  N  + V AELN D Q +   
Sbjct: 226 ELAQEGTAVVPGDRFEVERRFEAELQRSLQTLLEQVLGPGNVIARVNAELNFDQQVVERH 285

Query: 277 VYDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
           +++P  D        + +  +          V  + N+P        +     +  + E 
Sbjct: 286 LFEPPADGGQGILRSIQELQETFTGQPAPGGVPGDSNIP----TYPQVGGGTLDYQRSER 341

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
            +NYE+N            + RLS+AVVVN                       + + V+A
Sbjct: 342 TANYEVNQVVDRVQVAPGAVRRLSVAVVVNG-------------DLTPERRQALQQAVAA 388

Query: 395 ATGINSRRGDTITITSMDFLENQLF-NSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
           A G + +R D + + +M F          +++       +     ++     L    LV 
Sbjct: 389 AIGSDPQRQDQVEVVAMPFDTTVADRLQQSLEEERQAREATRRVALLAGAGGLALLALVL 448

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            +     RRL       +    G   +      +                          
Sbjct: 449 LVAAWRRRRLARRLLEAQAAGHGLPAVPGSTAGTVAAGPAGRGTAAVPGPGGPVPGPAGA 508

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                           ++  +++   E  A+++R W   
Sbjct: 509 AATGANGKAAEATVLEQVSELVKNQPEHVAQVIRSWLAE 547


>gi|327478787|gb|AEA82097.1| flagellar MS-ring protein [Pseudomonas stutzeri DSM 4166]
          Length = 558

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 104/529 (19%), Positives = 199/529 (37%), Gaps = 20/529 (3%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
              + ++  +  L+   E      +   L    + +RI      I V    + +AR+ L 
Sbjct: 38  FYLWRDNGSFRPLHGAGESFPAAEVMQVLDGEALQYRIHPQSGQILVREDQLARARLLLN 97

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           A+G+   +  +GYELFDK    G + F+Q++   R+LEGE+ART+ ++ G+  ARVH+  
Sbjct: 98  AKGV-KVAQPAGYELFDKEEPLGTSQFVQDVRLKRSLEGELARTVMALKGVQQARVHLAQ 156

Query: 159 PDMGSFRKIGARPTASVM---IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
            +  SF      P+ + +   +            AI +LVA +VPNL   DV V+D  G 
Sbjct: 157 EENSSFVVSKRAPSKASVMLQLEPGYKLSSDQVGAIVNLVANSVPNLKPEDVGVVDQYGA 216

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           LL+          ++   V+  Q +   NI + LA  LG+ NFR +V A+++   ++   
Sbjct: 217 LLSRGLNVGGGPAQNWQAVEDYQQKAAANIEQVLAPVLGLGNFRISVAADIDFSQKEETF 276

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD----- 330
             Y       R        + +             N P     +    +     +     
Sbjct: 277 QSY---GDTPRLRNEVLRNESALDRLALGVPGSLSNRPMPPAPEGEEAQQPATENKGATS 333

Query: 331 -KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEIN 389
            ++E     + +   +   H  + L + S+AVV+N     E        G  D   AE+ 
Sbjct: 334 LREESTRQMDYDQSVVHVRHAGFALRQQSVAVVLNSAAAPE-------GGWTDEARAELE 386

Query: 390 KIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            +V +A G    RGD ++++ + F   +             + +     V   +  L+  
Sbjct: 387 AMVRSAVGFKQERGDLLSLSVLPFAAVEPIEQVVPWWENSQVHALAKVGVAGLIALLLLL 446

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
           ++V     +  +R       ++G  G     S P      +   + +             
Sbjct: 447 IVVRPAVRNLTQRNVAALPQREGLEGSLVEPSAPAALEGDSRPALASPREPGGPHIFGEL 506

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558
           +    ++        +     L  + + + ER +++++ W      D  
Sbjct: 507 NPLSEIRLPAPGSGLELQIEHLQMLAKNDPERVSEVIKHWIGRNERDLN 555


>gi|310816845|ref|YP_003964809.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare
           Y25]
 gi|308755580|gb|ADO43509.1| flagellar M-ring protein FliF, putative [Ketogulonicigenium vulgare
           Y25]
          Length = 500

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 127/546 (23%), Positives = 225/546 (41%), Gaps = 53/546 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +       +     R +IL +  L   +  +     V  P    LY  L+ +    +  A
Sbjct: 1   MQNLLALWSGFSLRRRIILVAATLGIFLAVIGLARGVGRPDMALLYAGLDPAASAEVVAA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           + +  + F +   G +I VP++     R+ LA  GLP+  +  GYEL D ++ FG T+ M
Sbjct: 61  VEQQRLPFEVR--GDAIYVPAASRDLLRMTLAGAGLPAPGAQ-GYELLDNLSGFGTTAQM 117

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI ++ G+ AARVHI  P    F++      A  +  A   +  +
Sbjct: 118 FDAAYWRAKEGELARTILAVPGLQAARVHISPPAARVFQQGEPATAAVTVTMASGSASQQ 177

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A+A R L+AAAVP LD G+V V+D+   L+ A +  +    +   +           + 
Sbjct: 178 QAQAFRSLIAAAVPGLDPGNVAVIDAKAGLIAAPDNAQLADTRQDELR--------NRVR 229

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
             L A +G  N    +  E   DT+ I E   DP+ +V  S  +S+ A+RS+ +  + +V
Sbjct: 230 SLLEARVGAGNAVVELAVETVTDTESIFERRLDPEGRVVVSNDVSETARRSQGN-ADGSV 288

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P  +  +     S E+ + +   +NYE++  S         + RL++AV+VN+ 
Sbjct: 289 TVASNLPDGAANQEAGSSSSEDRESRN-VTNYELSETSREVLRAPGAVRRLTVAVLVNEP 347

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
              E         +    L  + ++V++A G ++ RGD IT+ +M F+   +  +  V  
Sbjct: 348 TGPEA------APRAPDELEALRELVASAVGFDAARGDVITLRAMPFVAPPVLGTEAVAA 401

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                       ++      +  L++    L  L R                        
Sbjct: 402 P---ARLFDPMQLVQFGALALVALILGLFVLRPLLRPK---------------------- 436

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                        +L     D F+ +  +     +  +     RL  +I   +E   ++L
Sbjct: 437 ---------PQVDSLPPLLDDSFAMAMPMADGFAALDAPDPVARLTALIADRQEDSVRLL 487

Query: 547 RKWARS 552
           + W   
Sbjct: 488 QSWVED 493


>gi|288573030|ref|ZP_06391387.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568771|gb|EFC90328.1| flagellar M-ring protein FliF [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 497

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/541 (20%), Positives = 203/541 (37%), Gaps = 57/541 (10%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
             ++ +     +A         ++ L+  LE+ D   I   L E  I +R+    ++I +
Sbjct: 1   MGIVSLVFFGLIALVVLSGRESWEPLFSGLEIQDEASIVAYLKENKIPYRLDPGANAILL 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P   V + R+ LA  GLP      GYE+FD V   G++ F Q+IT VRALEGE+ART+  
Sbjct: 61  PEEHVYEVRLELARAGLPKGGVK-GYEIFDDVQ-MGMSEFQQKITYVRALEGELARTVAQ 118

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLD 203
           I  +  A+++IV+P    F +     TASV++R         +  +AI HLV+ +V  L 
Sbjct: 119 IDSVEYAKINIVIPQPHLFLEQQQPATASVLVRIHQGASINPEQIKAIVHLVSHSVEGLQ 178

Query: 204 MGDVTVLDSTGKLLTANEMERN----------ILGKSLSIVQAIQHEIEMNINKALAAFL 253
             DVTV+D+ G +L+    +            +      + +  + E+E  +   L    
Sbjct: 179 PDDVTVVDTDGNVLSDLIEDDMFIYSDGAGRTVSSVQRELERQQEKEMERKVRAMLERVF 238

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G  +    +  +L++D ++     Y P    +  +R  ++ + S                
Sbjct: 239 GPGSVVVRIKVDLDLDKKRNASTQYIPGPTGKGVVRSEQNTEESYVGPGGPTGGAPGTTT 298

Query: 314 HVSD-RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
           ++           +   +K +  +NYEI T           + RL+ +V+V+        
Sbjct: 299 NIPGYAIDTGAGGVGEYNKTDTVTNYEITTHESENVETPGSIRRLTASVLVDG------- 351

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDIL 432
                    +  L +I  +V+ A G++S RGD I I SM F             +     
Sbjct: 352 ------DLSEEQLEDIRALVAPAIGLDSGRGDQIAIQSMKFSTTLADRMAEQLAAERRQK 405

Query: 433 SRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTG 492
                T++  L+ L+   L  +      R+  +     +      S+        A+   
Sbjct: 406 IVAAVTLLGILLILLALALFMWYRRRRRRKSLDAARRAEDAGQVPSLQDLLSSPGAMEAQ 465

Query: 493 LMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                                              + ++ +    N E FA  +R+W   
Sbjct: 466 G-----------------------------ELAVLEEQIRNYALNNPEEFAAFIREWIVE 496

Query: 553 E 553
           +
Sbjct: 497 D 497


>gi|217076889|ref|YP_002334605.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B]
 gi|217036742|gb|ACJ75264.1| flagellar M-ring protein FliF [Thermosipho africanus TCF52B]
          Length = 534

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/559 (18%), Positives = 208/559 (37%), Gaps = 42/559 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
            LD   +F      L + + + + S+++  ++  +     +N+P Y  L      +D   
Sbjct: 7   FLDSFSKFPDFWKGLKKNQKITMLSLLVAILIAVVLTVI-LNAPKYVLLISANNETDAGA 65

Query: 63  ISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           I   L    I +++   G+ I +PSS  V + R+ LA+      SS+ G+EL D+ +SFG
Sbjct: 66  IIQQLEAQGIPYKVEA-GNRIFIPSSYNVYEVRMKLASS-GALGSSSKGFELLDQ-SSFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIR 178
            TSF +++   RAL+GE+ RTI +I+G+  ARVH+ +P    + +      R +  +++ 
Sbjct: 123 ATSFDKQVNYQRALQGELERTIATINGVKFARVHLTLPKYTYYVRGEMAETRASVQLVLD 182

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQ 235
                  +  + I +L+  AV  L   +V V+D+ G+ L+     +         + +  
Sbjct: 183 PGVSLSKEQIKGIIYLLTGAVEGLKPENVKVVDNYGRALSDLVNFDDNTVAASTKVELKM 242

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++   +  I  AL    G          +LN    +     Y          + ++  +
Sbjct: 243 QLESYYKKKIQPALETVFGFGTVEVIPDVKLNWQKAEKTITTYSTPKGGLIRSQETESEK 302

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YKL 354
            +        V  E N+P    + +         +K  + +NYE+N        +N  ++
Sbjct: 303 STTAPADGGPVGTESNIPTTYYQSIEGSSVTL-YEKNHQITNYELNQIVENIVQNNEGEI 361

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E +S++V+++                      EINK+VS     +     + +  S    
Sbjct: 362 ENISLSVIIDSSSTV----------FNKISKEEINKMVSDVIEKSIAANSSPSAISYSLA 411

Query: 415 ENQLFNSGTVQVSF-MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
                     + S  ++  ++       A + L+ T+LV F     L +L  +   K   
Sbjct: 412 FIPFSREMEEEFSKIIEQQTKQKEFFYKATLLLIATILVFFGTYGFLLQLKKVKSRKLVL 471

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
              K +           TG      ++                      V ++       
Sbjct: 472 QRYKMLEEEVQKVMEEKTGEEAEQILSEAQ------------------KVIEELRNYAKQ 513

Query: 534 MIEINEERFAKILRKWARS 552
           +   + E  A I++ W   
Sbjct: 514 LAVKSPEEVASIIKIWISE 532


>gi|163789650|ref|ZP_02184088.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7]
 gi|159875182|gb|EDP69248.1| flagellar M-ring protein fliF [Carnobacterium sp. AT7]
          Length = 524

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/564 (19%), Positives = 220/564 (39%), Gaps = 51/564 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  I           T+LG+++ + L  V+   I +  A  ++     Y  L+  LE +D
Sbjct: 1   MDGIKKIWTGIKDGWTNLGKSKRIGLVMVLFFVISIVTAMTYYTQKVEYATLFSNLEEAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   +    ID+++ DNG++I +  + V   RI LA   L    S +G+E+FD+ + 
Sbjct: 61  AGTIVNDIKTKGIDYKLEDNGTTILIDQAQVDAYRIELAVNDL-LPKSTTGFEIFDETSM 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVMI 177
              T   ++I   RA+ GE+ R+I ++  I  A+V + +P+   F   +  ++ +ASV++
Sbjct: 120 M-ATDEDRKIMYQRAVTGELERSISALDSIEEAKVMLSLPEDSVFTSEENQSKASASVVL 178

Query: 178 RA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGK 229
                +     + + I  L++ AV NL   ++ ++D+ G LL+    +       +++ K
Sbjct: 179 TPLSGSQIPANAVQGIASLISGAVDNLPKENIKIVDTAGNLLSVALEDEVNLNATDLVSK 238

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
             +I  + + ++E  + + L    G+D    AV A++N D+ +    + +      RS  
Sbjct: 239 YQAITNSYEQQLEQKLLQTLGPIYGIDKLTVAVNADMNFDSSE--SEIINYGDSSVRSET 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           +S              + VE+     +                +  +NYE+N+++  T  
Sbjct: 297 VS---------AGGKTIGVEEGEGFDNAINQVTSGEEGGNSTYDRTTNYELNSETTNTIK 347

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              ++ERLS +V+ +                  +    +  IV+A  G  + R D I+I 
Sbjct: 348 APGEVERLSTSVIFDGN-------------LSPADKESLEAIVAATVGTVAEREDVISIQ 394

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            +DF  +      T        +          LV  +  L+V  + L  L R       
Sbjct: 395 GIDFATSTEVVEPTAPEQLKSSIRDTLLRYWPYLVGGLVLLIVMIVLLRMLLRNRK---- 450

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                                  ++        +  Q       +L+  +N     + + 
Sbjct: 451 ---------DDELDFFDEEEPEPIVQPMRPVQPTDEQKKAKEKADLKRELN-KNMSEKET 500

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
            +    + + E  A +++ W + E
Sbjct: 501 TVREYAKESPEGAADLIKIWMKDE 524


>gi|322432996|ref|YP_004210245.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9]
 gi|321165223|gb|ADW70927.1| flagellar M-ring protein FliF [Acidobacterium sp. MP5ACTX9]
          Length = 525

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/562 (20%), Positives = 226/562 (40%), Gaps = 44/562 (7%)

Query: 1   MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           MA  DQ  +Q  +   +  +++ L L       + L       + +P Y  L   LE +D
Sbjct: 1   MAGFDQIFVQAKQFWATRTQSQRLFLGVGAAATVGLLALFANLMVTPDYKPLISGLESAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              IS  L+   I F++S +G SISVP+  V  AR+ +A+     S    G+E+FDKV+ 
Sbjct: 61  AQAISADLTAKKIPFQLSPDGKSISVPADQVDAARLDVASNQSTHSG-RLGFEIFDKVS- 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           +G T F +++   RALEGE+ RTI ++ G+ +ARVH+VM     F        ASV ++ 
Sbjct: 119 WGQTEFDEKVNYQRALEGELERTIVTLGGVKSARVHLVMATDSVFLDREKSAKASVTLKL 178

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                 +    +I+ LV+ AV  L   DV+++D+               G      +  +
Sbjct: 179 NRGGLSHDETASIQRLVSGAVEGLKPTDVSIIDADSN------QSMGAAGDGAMGEEGAE 232

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            ++   +   L   +G D+ R++V  E +  T +  +  YDP   V  +I+ S ++  + 
Sbjct: 233 RQLTQRLMATLTPVVGGDHLRASVNVEYDPGTTEENQEKYDPAVSVPLTIQRSDESTGAG 292

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                   T   N+P       P          K E + Y +N  +  +     +++R++
Sbjct: 293 AGVGGVPGTT-SNVPQNKANVPPPVGEDSAQVSKTENATYGVNKITRHSLEPAGRIKRIT 351

Query: 359 IAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            A+VV+                   +    L +I  +   A G+++ RGD I++ ++ F 
Sbjct: 352 AALVVDDSVKRKLGANGKWTEIRTKRSPQELKQIETLAQNAIGLDTTRGDVISVENLAFD 411

Query: 415 ENQLFN-SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
                + +    +         F++V+   + L+  +L   L +  +++       +  +
Sbjct: 412 RPDEPDVAPVTALDRARKGVSDFSSVVRYAMLLILFVLAYVLMIRPVQKKVLAVSVQLPQ 471

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                 ++      A +T +     +                              +++ 
Sbjct: 472 QPLLPEMAAALPLLAPSTSMARALAL----------------------------KEQVVQ 503

Query: 534 MIEINEERFAKILRKWARSEIE 555
            ++   E  A++++ W R E E
Sbjct: 504 QVKSEPEGSARVVQAWLRGEAE 525


>gi|312621568|ref|YP_004023181.1| flagellar m-ring protein flif [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202035|gb|ADQ45362.1| flagellar M-ring protein FliF [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 560

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/569 (18%), Positives = 221/569 (38%), Gaps = 29/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L    +  +SL +++ ++      + ++  + A +    PHY  ++  L+  +   
Sbjct: 5   LNDYLKNIKEKWSSLSKSQKIMFVVSSSIILLSVIVAIYITTRPHYVTIFSGLDPKEAAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   LS+  ID + ++ G++I V    V +A++  A  G P +SS +  +     +S   
Sbjct: 65  IQNILSDQKIDSKAANGGTTILVRDKDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI + ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TETDKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A 
Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  I + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+
Sbjct: 245 KNEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  S        + N    + +             K +E  NY+ N K I T     
Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406
            +     +   V+      T+     ++Q K  S+     +      +           I
Sbjct: 365 TINYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETII 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R     ++ +   +  LL+       L +  + 
Sbjct: 425 NLIKSATGIQNVTVEGYEIPTFVDKPQRQIP--VDYIYVALAFLLLMVFAASVLIK-ASR 481

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             +K  E+ G   L            L   +        +            +  +   Q
Sbjct: 482 SKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI----------NVEEFGVSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  +++   E  A++LR W   + E
Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|148554208|ref|YP_001261790.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1]
 gi|148499398|gb|ABQ67652.1| flagellar M-ring protein FliF [Sphingomonas wittichii RW1]
          Length = 578

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/565 (19%), Positives = 217/565 (38%), Gaps = 35/565 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +L+  K  T     +  +    +L  +         ++     +L+  +  +D   ++ A
Sbjct: 28  VLERIKDFTGQPAVQRSLPMIGLLGLLGGAALLWSTMSGAPQRDLFAGMGDADKAAVAEA 87

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  ANI ++I     +++VP +   +A++ LA QGLP S+ +   +        G +  +
Sbjct: 88  LKTANIPYQIDRGTGALTVPETSFYQAKMLLAQQGLPKSAPDG--DALISSLPLGASRAV 145

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184
           +      A E ++ARTI++I  + +A+VH+       F +  A+P ASVM+R        
Sbjct: 146 EGEKLRTAREMDLARTIEAIDAVESAKVHVAAEQPSVFLRDEAKPQASVMLRLRAGRALA 205

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIE 242
               +AI HLVA++VPNL    V+++D  G+LL+A+  +       + + I   I+    
Sbjct: 206 DSQVQAIVHLVASSVPNLTPDGVSIVDQAGRLLSASGGDPMSQASTRQVDIQNKIEQRYL 265

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
             + K L   +G  NF + V A+++    Q     Y  D+ V R  + S    + +  + 
Sbjct: 266 DALTKILTPIVGPGNFTAEVHADVDFTETQATRESYPKDTAVVRQEQGSWTGDK-KDGEA 324

Query: 303 ESAVTVEQNMPHVSDRKVPLPR-------------SLENTDKKEEQSNYEINTKSIATTH 349
                   N P  + +    P              +      +     YE+  +   T  
Sbjct: 325 TGIPGALSNQPPAASQVAAAPNQTVAAPTAGTTDAANAGKTSENYNRTYELGREVSVTRA 384

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RLS+AV + +G                + LA I  +V  A G +  RGD + ++
Sbjct: 385 PIGTVKRLSVAVALREGSRK----------FSRAELASIETLVRGAIGADQARGDVVALS 434

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +  F    +     V+ ++ D  +   +T+   L  L+   L+ F     L +       
Sbjct: 435 ARSF---AVAEDAEVKPNWWD--APWVSTLARNLSALLVVALLVFGVAKPLLKRRAAYIE 489

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +K         S   +       +       +        +    L     +        
Sbjct: 490 EKKAALDAMAASGGRLPQGTNPSIRAEIASEMAQQALIDPNKPVTLDMIEATPGYANRAE 549

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            + + +  + +R A ++R   R+++
Sbjct: 550 LIRNFVRQDPDRAALVVRDLIRADM 574


>gi|27904573|ref|NP_777699.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|38257545|sp|Q89B00|FLIF_BUCBP RecName: Full=Flagellar M-ring protein
 gi|27903970|gb|AAO26804.1| flagellar M-ring protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 555

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/579 (20%), Positives = 218/579 (37%), Gaps = 80/579 (13%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
               ++L     ++L   ++  I L +   FF    +Y  LY  L   D   I   L   
Sbjct: 18  RNFFSNLSLNVRVLL---LVFLITLIVFYIFFFKPLNYSILYNNLSNDDEKSIVSRLISL 74

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I F+ + N S + +PS+ + K  + LA QGLP      G+EL D    FGL+ F +E+ 
Sbjct: 75  KIPFKFNQNHSELLIPSNALKKVYLDLAEQGLPKEK-KVGFELLD-TEKFGLSQFNEEVN 132

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSA 188
             RALEGE+AR+IQ +  I  ARVHIV+     F +    P+ASV++  +      Y   
Sbjct: 133 YERALEGELARSIQKLENIKTARVHIVLSKSSVFIREKKIPSASVILEIKPGRYLNYNQI 192

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQAIQHEIEMNIN 246
            +I H+VA  V NL + ++T++D  G LL++       +     L     I+   +  I 
Sbjct: 193 NSILHIVAQGVSNLQIENITIVDQFGNLLSSMNDLYNDSYSNNQLKYSNEIETGYKNKIE 252

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS----------KDAQR 296
             L   +GV+N  + V A+++ D Q+  E  + P+   E+    S          +    
Sbjct: 253 SVLVPLVGVNNIHAQVTAQISFDKQENSEERFTPNYSNEKQSVRSVQNKKNIEFSEKYSD 312

Query: 297 SETSQPESAVTVE--------------QNMPHVSDRKVPLPRSL----------ENTDKK 332
           +  S  +  ++ +               N+P+ S++      S           +++  +
Sbjct: 313 NSFSSNQGVLSNKKLNDLSNSSLLFNHNNIPNFSEQVSSTKNSKRNLSDESVIPQSSTNQ 372

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
               NYE++        +   ++RLS+AVV+N  +                 L  I K+V
Sbjct: 373 NYIVNYELDHVISHNKFNVGNVKRLSVAVVINYVK----DKHGKFVSLSTDKLNSIKKLV 428

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             + G + +RGD++++ +  F   +++           I   +        + ++   L+
Sbjct: 429 CESVGFSRKRGDSVSVVNFKFSTPEVYFQSPPSNYNKYISFNNLFEFFLICLGVIILCLL 488

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
                       N                                       + +     
Sbjct: 489 IIKLNFLKILFKNKKRI---------------------------------DISNNYAVKD 515

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                       K+   +L  ++E + +  A ++RKW  
Sbjct: 516 NLTSQNKGVEDDKELKKKLSSVLESDPKEIAMVIRKWIS 554


>gi|284041509|ref|YP_003391849.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684]
 gi|283945730|gb|ADB48474.1| flagellar M-ring protein FliF [Conexibacter woesei DSM 14684]
          Length = 505

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/544 (20%), Positives = 206/544 (37%), Gaps = 49/544 (9%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
             +L     ++LA   L  +++         +P Y  L   ++  D   ++ AL E  I 
Sbjct: 7   LANLSTRGKIVLAGGALAIVVVLFFLFQIATAPSYTTLLTGMDPKDTGEVTAALDERGIA 66

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           + + +NG++++V      +ARI LA  GLP  ++N GY++ D     G ++F Q +   R
Sbjct: 67  YELQNNGTALAVQKGQTAQARIALAGAGLP-GNTNDGYKILD-DQKMGTSNFQQNVNYQR 124

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDM--GSFRKIGARPTASVMIRAINPSVYKSAEAI 191
           ALEGEI  TI+ + G+ +A+V +V+PD     F +     TA+V++   +         I
Sbjct: 125 ALEGEIGTTIEEVDGVSSAQVQLVLPDREAQLFAENVNPATAAVLLSGASTLDEGQVRGI 184

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKAL 249
             LV  +VP L    VT+ DS+G +L       +  G     +       +   NI   L
Sbjct: 185 AQLVTNSVPGLKSEKVTITDSSGTMLWPTATSGSSSGLLAKQAAEARYNQQTATNITAML 244

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
           A  +G D  +  V A+L+ +     + +         S R  ++   S   +        
Sbjct: 245 ARTVGPDKVQVQVKADLDANEATQ-DRLVYGRDGTPLSNRAERETLVSRGGRAGGPAGTA 303

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            N P V   +        +  ++ E  N  +N     T      + R  +AV+V+     
Sbjct: 304 GNNPPVYAGQAGGDS---DYRRESEDENLAVNKTVTRTRIAPGAVNRQQVAVLVDDSV-- 358

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFM 429
                        + L +I   V +A GI+  RGD +T+ S+ F E     + +      
Sbjct: 359 -----------PAAMLPQIRDAVMSAAGIDEDRGDVLTLGSIPFAELPRPAASSPVDDIW 407

Query: 430 DILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAV 489
           D             +  +  L+   L    LR+  N   A +     +            
Sbjct: 408 D--------YARYALLGMAALVFLALVARQLRKRENETLAGEPTWLREIESPRTLAELER 459

Query: 490 TTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
               +    +    S ++                   + +++  ++E + ER A+ +R W
Sbjct: 460 FEEPVAPTQVLPLRSPENA------------------ARMQVEELVERDPERVAQHVRAW 501

Query: 550 ARSE 553
            + +
Sbjct: 502 MQED 505


>gi|241761170|ref|ZP_04759259.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374789|gb|EER64250.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 619

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 110/614 (17%), Positives = 227/614 (36%), Gaps = 81/614 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             ++++ +  K        +  +    ++    +     F +++P   +LY     +D  
Sbjct: 32  DRVNKVYERVKDFVQQPAIKRSLPLMRLISLTAIGALIWFLLSAPPQRDLYPGAGDADRA 91

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+ AL    I + I+     I+V      KAR+ LA QGLP S+ +  + +       G
Sbjct: 92  SIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDHVI--SSLPLG 149

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            +  ++      A E ++ARTI++I  +  ARVHI  P    F +     TASVM++   
Sbjct: 150 ASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238
                    +AI++LVAA++P +    V+V+D  G LL+A    + +I  + L + Q ++
Sbjct: 210 GRNLSNAQVQAIQNLVAASLPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTLE 269

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                 +NK L   LG +N+ + V  +L+    Q     Y  +  +          +   
Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327

Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320
             Q         NMP                                             
Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387

Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           +  +    +     YE+  +     +    ++R+S+A+ + +  
Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
             +              +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S
Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           ++ +L+R+ +        LV  L++       L+      + ++        L    I +
Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
            +  G  P +     +   D+   +   ++R++          + H ++ +  R A ++ 
Sbjct: 554 LIAEGEQPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604

Query: 548 KWARSEIEDRYTQH 561
              RS+++     +
Sbjct: 605 DMMRSDLKSLENHN 618


>gi|254487125|ref|ZP_05100330.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101]
 gi|214043994|gb|EEB84632.1| flagellar M-ring protein FliF, putative [Roseobacter sp. GAI101]
          Length = 422

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 111/412 (26%), Positives = 184/412 (44%), Gaps = 10/412 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + QF      L   R L + +  L      +A    V SP    LY  LE      +  A
Sbjct: 5   VQQFLNIWAGLTFRRQLTIVAATLAMFFGVLAMSKMVASPTLTLLYAGLESGAAGDVVRA 64

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  + + +   G SI V +    + R+ LA++GLP++  N GYEL D +  FG TS M
Sbjct: 65  LEQRGVVYEVR--GGSIFVDAKARDELRLTLASEGLPANG-NRGYELLDNLTGFGTTSQM 121

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +    RA EGE+ARTI +   I  ARVHI       F++      +  +          
Sbjct: 122 FDAAYWRAKEGELARTIVANPQISMARVHIAGTGSNPFQRGVVPKASVSLTPNGGEISAA 181

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
            A+A+R LVA+AV  L   DV V+D+ G L+ +++                    +  + 
Sbjct: 182 EAKAVRFLVASAVAGLSPDDVAVIDANGSLIGSSDDAMPTSQG-----DDKAEMFKEKVQ 236

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
           + L A +G+ N    V  +   +++ +RE  +DP+ +V  S    ++   S +      V
Sbjct: 237 RILEARVGLGNAIVEVSVDTETESESVRERRFDPEGRVAISTDT-EERSNSSSDAGSGDV 295

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
           TV  N+P  + +      S  +  +  E+ NYE++            ++R+++AV++N  
Sbjct: 296 TVASNLPSNNGQ-PGGDSSSSSNSETRERVNYEVSETEREIVRAPGAVKRITVAVLINDA 354

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
             T+  G    Q + D+ L  + ++VS+A G ++ RGD ITI SM       
Sbjct: 355 IATDESGVETSQPRDDTELEALRELVSSAVGFDAERGDIITIKSMALQSIPP 406


>gi|312876496|ref|ZP_07736479.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311796707|gb|EFR13053.1| flagellar M-ring protein FliF [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 560

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 110/569 (19%), Positives = 221/569 (38%), Gaps = 29/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L    +  +SL +++ ++L     + ++  +AA +    PHY  ++  L+  +   
Sbjct: 5   LNDFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   
Sbjct: 65  IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI   ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TEADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A 
Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+
Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  S        + N    + +             K +E  NY+ N K I T     
Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406
            +   + +   V+      T+     +DQ K  S+     +      +           +
Sbjct: 365 TINYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIV 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R        +      L+     L         
Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDKPQRQIPVDYIYIALAFLLLMAFAASLLIKATRSKP 484

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              +   VG   I    P +  +  G+       ++  N             +  +   Q
Sbjct: 485 RRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEIN-------------VEEFGVSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  +++   E  A++LR W   + E
Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|312126819|ref|YP_003991693.1| flagellar m-ring protein flif [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776838|gb|ADQ06324.1| flagellar M-ring protein FliF [Caldicellulosiruptor hydrothermalis
           108]
          Length = 560

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 108/569 (18%), Positives = 224/569 (39%), Gaps = 29/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L    +  +SL +++ ++L     + ++  +AA +    PHY  ++  L+  +   
Sbjct: 5   LNDFLKNIKEKWSSLSKSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   
Sbjct: 65  IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI + ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TEADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEATKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L++N  +    +  K L +  A 
Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQLKIAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+
Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  S        + N    + +             K +E  NY+ N K I T     
Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406
            +     +   V+      T+     +DQ K  S+     +      +           +
Sbjct: 365 TINYDKSSIAVVLYRYVTYTQEDFEKSDQAKNMSWAQFKLQNQNNKRSFLTDQKEVETIV 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R     ++ +   +  LL+       L +  + 
Sbjct: 425 NLIKSATGIQNVTVEGYEIPTFVDKPQRQIP--VDYIYVALAFLLLMVFAASLLIK-ASK 481

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              +  E+ G   +            L   +        +            +  +   Q
Sbjct: 482 SKPRTVELAGVGPVEISEEKPVAEEILQEAEKRKKAEVEEI----------NVEEFGVSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  +++   E  A++LR W   + E
Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|262166236|ref|ZP_06033973.1| flagellar M-ring protein FliF [Vibrio mimicus VM223]
 gi|262025952|gb|EEY44620.1| flagellar M-ring protein FliF [Vibrio mimicus VM223]
          Length = 510

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 97/526 (18%), Positives = 201/526 (38%), Gaps = 30/526 (5%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
             F+V  P    L    E  ++  +   L +    +++  +G++I VP S     ++ + 
Sbjct: 2   LFFWVREPDMRPL-GAYETEELIPVLDYLDQQKQQYKL--DGNTILVPVSDYNSLKLSMV 58

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
             GL +    +G E+  +   FG++  +++     + E ++A+ I+ +  I  ARV + +
Sbjct: 59  RAGL-NQERQAGDEILMQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQINKARVLLAL 117

Query: 159 PDMGSFRKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
           P    F +     +ASV +  R       +  +A+  +VA+AVP +    VTV D  G+L
Sbjct: 118 PKQSVFVRQNQEASASVFLSLRTGANLKQEEIDAVVDMVASAVPGMKPSRVTVTDQHGRL 177

Query: 217 LTANEMERNILGKSLSIVQAIQHE--IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
           L++   +     +        Q E  +   I+  L   LG+ N+ + V  EL+    +  
Sbjct: 178 LSSGSQDPVSAARRKEQELEKQQEEALRGKIDSVLIPILGLGNYTAQVDIELDFSAVEQT 237

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-------LPRSLE 327
             V+DP++   RS    +D      +          N P                    +
Sbjct: 238 RKVFDPNTPATRSEYTLEDYNNG--NVVAGVPGALSNQPPADASIPQDVAQMKDGSVMGQ 295

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN-KGRLTEVLGRSADQGKIDSYLA 386
            +  KE   N+E++T        +  + R ++AV V  +  +    G        ++ L 
Sbjct: 296 GSVHKEATRNFELDTTISHERKQSGVVNRQTVAVAVKSRSNVNSETGEVTYTPLSEADLN 355

Query: 387 EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFL 446
            I +I+    G +  RGD + + SM F E ++     V +      +     + +ALV +
Sbjct: 356 SIRQILIGTVGYSENRGDLLNVLSMPFAEPEVEQIADVPIWEHPNFNDWIRWLASALVII 415

Query: 447 VGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ 506
           +  L+   L   A+++L N       ++ G   +           G   +     +  + 
Sbjct: 416 IVVLV---LVRPAMKKLINPAADSDDQMYGPDGMPIGADGETSLIGSDIDSGELFEFGSG 472

Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                        N +  +     +  ++    E  A++++ W ++
Sbjct: 473 IDLP---------NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 509


>gi|15642994|ref|NP_228036.1| flagellar M-ring protein [Thermotoga maritima MSB8]
 gi|4980719|gb|AAD35313.1|AE001706_12 flagellar M-ring protein [Thermotoga maritima MSB8]
          Length = 532

 Score =  276 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 98/502 (19%), Positives = 202/502 (40%), Gaps = 28/502 (5%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M I+++L   +K       S+ R R  ++  + +  ++  +      + PHY  L   L 
Sbjct: 1   MNIVERLRDLWKKIVDLWNSMPRERKFLVGGIGIALVIAIVLFAVVASVPHYRLLVSGLN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L E N+ +++S  G  I VP S  V + R+ LA++G+   SS  G+ +  
Sbjct: 61  EDEAGVIIQKLEEMNVPYKVSP-GGDIYVPDSYNVYELRMKLASEGV-LGSSRKGFSILS 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPT 172
           + + FG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +      R +
Sbjct: 119 ENS-FGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229
             V++        +    I  LV+ AV  L   +V V+D+  + L+     +    +   
Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            L + Q ++   E  I KAL +  G           +N    +     Y+  ++ E  +R
Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297

Query: 290 LSKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
             +       + P        + N+P ++   V    +    ++    +NYE+N      
Sbjct: 298 SQETQVEKSQNLPPTGGPAGTDSNIPPLTYPSVTSEGTS-TYERTHTITNYELNEVYQKI 356

Query: 348 THD-NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405
             +   ++  LS+AV++           S+       + + IN +V    G I S    +
Sbjct: 357 IQNREGEISSLSVAVII--------DASSSVLQNSSDWSSVINDLVEKGVGSITSSASLS 408

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + +  + F    +  +   ++  ++   R     +   +    T ++ +L +  +RR+  
Sbjct: 409 VAVAFLPFDR-SIERALQEELKQIETRRRFVLYSVGIALLGFLTFMLIYLMIVQIRRIRA 467

Query: 466 IDDAKKGEVGGKSILSPPPISS 487
              A++     +  +       
Sbjct: 468 RKLAEERRRKLEEEVKEILQEE 489


>gi|295696113|ref|YP_003589351.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912]
 gi|295411715|gb|ADG06207.1| flagellar M-ring protein FliF [Bacillus tusciae DSM 2912]
          Length = 506

 Score =  276 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 107/558 (19%), Positives = 186/558 (33%), Gaps = 71/558 (12%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L Q       L   R   L +     ++L +A  ++  +P Y  +Y  L+      ++  
Sbjct: 9   LEQARTMWRGLDPKRRRWLIAGAAAGLVLLVALSWYALAPRYVVIYQNLDAKAAGEVTNK 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  I +R S  G  + VP     +AR+ LA  GLP S      +LF   N  G++   
Sbjct: 69  LDELKIPYRTS--GGQVMVPEQDADRARMQLAIAGLPKSGYVGYEDLFGNTNIGGMSDNE 126

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIRAINPS 183
             +  + ALEG +A TI+ I G+   +VH+VMP+   F +     A+ +  + I      
Sbjct: 127 FNVKSLMALEGSLAGTIRQIDGVEDVQVHLVMPEQHMFVEQPVGQAKASVFLKIAPGAQL 186

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLSIVQAIQHE 240
                  I+ LV+ +V  L+  DV V+D  G  L   E          + + I +  +  
Sbjct: 187 GPDQVAGIQQLVSHSVKGLNATDVAVVDQNGVRLDHPEDAGTAVSNADRQILIQKQYEQL 246

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRS 297
           I   +  AL   LG  N      A LN D  +  +    P    + V  S++ S  +   
Sbjct: 247 ISDRLQSALGRILGPGNVVVLANARLNFDQVKSTQSDVRPVVGQNGVPVSVQKSTKSATG 306

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                         M   +             D+ ++  NYE++          + L+ L
Sbjct: 307 TGVGGVPGTATAGGMATGAPPTYQGATGNGTYDESQQTINYEVSKIVTERVGQPFTLQDL 366

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI--NSRRGDTITITSMDFLE 415
           +++V+VN                    + +I   V  A G   +  +   +T+T M F  
Sbjct: 367 TVSVLVNGQP-------------TPLQVQQIRNYVLTAVGYPNDGTQDQKVTVTGMPFQT 413

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            Q          +   +    A      ++             AL+R    +        
Sbjct: 414 AQSAPQVAWWARYGWAIGAFAAVAAAIGIW------------FALKRRRMAE-------- 453

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
                                           I +   +L        ++Q    +  + 
Sbjct: 454 -------------------------EGLPEPVIPAPRPSLFEESELPEAEQRRREVEQLA 488

Query: 536 EINEERFAKILRKWARSE 553
               + FA++LR W   E
Sbjct: 489 RTRPQEFAELLRTWLAEE 506


>gi|283856295|ref|YP_162369.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|283775291|gb|AAV89258.2| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 619

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/614 (18%), Positives = 227/614 (36%), Gaps = 81/614 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             ++++ +  K        +  +    ++    +     F +++P   +LY     +D  
Sbjct: 32  DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRA 91

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+ AL    I + I+     I+V      KAR+ LA QGLP S+ +  + +       G
Sbjct: 92  SIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDHVI--SSLPLG 149

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            +  ++      A E ++ARTI++I  +  ARVHI  P    F +     TASVM++   
Sbjct: 150 ASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238
                    +AI++LVAA+VP +    V+V+D  G LL+A    + +I  + L + Q ++
Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                 +NK L   LG +N+ + V  +L+    Q     Y  +  +          +   
Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327

Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320
             Q         NMP                                             
Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387

Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           +  +    +     YE+  +     +    ++R+S+A+ + +  
Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
             +              +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S
Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           ++ +L+R+ +        LV  L++       L+      + ++        L    I +
Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
            +  G  P +     +   D+   +   ++R++          + H ++ +  R A ++ 
Sbjct: 554 LIAEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604

Query: 548 KWARSEIEDRYTQH 561
              RS+++     +
Sbjct: 605 DMMRSDLKSLENHN 618


>gi|260752868|ref|YP_003225761.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552231|gb|ACV75177.1| flagellar M-ring protein FliF [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 619

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/614 (17%), Positives = 227/614 (36%), Gaps = 81/614 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             ++++ +  K        +  +    ++    +     F +++P   +LY     +D  
Sbjct: 32  DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPPQRDLYPGAGDADRA 91

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+ AL    I + I+     I+V      KAR+ LA QGLP S+ +  + +       G
Sbjct: 92  SIASALETGGIHYNINRGNGVITVSEKDYYKARMLLAQQGLPKSAPDGDHVI--SSLPLG 149

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            +  ++      A E ++ARTI++I  +  ARVHI  P    F +     TASVM++   
Sbjct: 150 ASRAVEGERLRAAREVDLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238
                    +AI++LVAA+VP +    V+V+D  G LL+A    + +I  + L + Q ++
Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                 +NK L   LG +N+ + V  +L+    Q     Y  +  +          +   
Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327

Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320
             Q         NMP                                             
Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387

Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           +  +    +     YE+  +     +    ++R+++A+ + +  
Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVTVAIALRQIN 447

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
             +              +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S
Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           ++ +L+R+ +        LV  L++       L+      + ++        L    I +
Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
            +  G  P +     +   D+   +   ++R++          + H ++ +  R A ++ 
Sbjct: 554 LIAEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604

Query: 548 KWARSEIEDRYTQH 561
              RS+++     +
Sbjct: 605 DMMRSDLKSLENHN 618


>gi|188589083|ref|YP_001920202.1| flagellar MS-ring protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499364|gb|ACD52500.1| flagellar M-ring protein FliF [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 520

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 117/565 (20%), Positives = 223/565 (39%), Gaps = 57/565 (10%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  +L+++   ++   S  +   + +    +  I+  ++   + +S  Y  L+  L+  D
Sbjct: 1   MNKLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIISTMIYTSSNKYQVLFSNLDPKD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L+E  +  +I   G +I VP+  V + R+ LA +     S +SGYEL D  +S
Sbjct: 61  AQTILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSS 115

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--I 177
           FG+T    ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V   +
Sbjct: 116 FGMTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLEL 175

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKS 230
           +  +       ++I  LV+ +  N+   ++ V+D    LLTAN  +          L K 
Sbjct: 176 KTGSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEVMSSESLDKQ 235

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
            S+ +  + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S + 
Sbjct: 236 YSLEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQT 294

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            K+   +      S   V+ N+   S+       +  N+ ++E+++NYEI          
Sbjct: 295 IKEVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISA 351

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             +++R++ +VVV+                  +    I   VS A G NS RGD I++  
Sbjct: 352 PGEVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLG 398

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           M+F  +   ++ +   +F     +                           + + I  A 
Sbjct: 399 MNFDPSLKEDAQSQVDAFNAEAKQKEM------------------------QKYMIMGAI 434

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL- 529
                   I+               ++   LD    D             +   K     
Sbjct: 435 ALIAIIIVIVILVKKRRKNAADEYDDETQLLDVVIGDEKEAEIFEPIEFETKNEKTHMEN 494

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +        E+  +I++ W   + 
Sbjct: 495 EIKKYATDKPEQVVEIIKSWLSEDE 519


>gi|312792647|ref|YP_004025570.1| flagellar m-ring protein flif [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179787|gb|ADQ39957.1| flagellar M-ring protein FliF [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 560

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/569 (19%), Positives = 220/569 (38%), Gaps = 29/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L    +  +SL  ++ ++L     + ++  +AA +    PHY  ++  L+  +   
Sbjct: 5   LNDFLKNIKEKWSSLSNSQKIMLVVSSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   
Sbjct: 65  IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI   ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TEADKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKSEATKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A 
Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSENSSDSTEGLSSKQLQLKIAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+
Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  S        + N    + +             K +E  NY+ N K I T     
Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTPQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406
            +   + +   V+      T+     +DQ K  S+     +      +           +
Sbjct: 365 TINYDNSSIAVVLYRYVTYTQEDFEKSDQAKTMSWAQFKLQNQNNKRSFLTDQKEVETIV 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R        +      L+     L         
Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDKPQRQIPVDYIYIALAFLLLMAFAASLLIKATRSKP 484

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              +   VG   I    P +  +  G+       ++  N             +  +   Q
Sbjct: 485 RRLELAGVGPVEISEEKPTAEEILQGIEKKKEPEVEEIN-------------VEEFGVSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  +++   E  A++LR W   + E
Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|114566385|ref|YP_753539.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337320|gb|ABI68168.1| flagellar M-ring protein FliF [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 540

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 226/565 (40%), Gaps = 46/565 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVN 61
           + +   +   S  ++   + ++    IL+ +   +      +    Y+ LY +L+  D +
Sbjct: 8   LKETAGRVAGSWQNMNLNQKVLAGGGILLILAAAIILVISSSRDTAYEVLYTELDKKDAS 67

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I+  L E  + +++ + G++I VP  +  K R+ LA++ LP     +G+ELF + + FG
Sbjct: 68  QITAKLDEGKVPYKLENGGTTILVPPDLKDKTRLTLASENLPR--GETGFELF-QESKFG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T   +++    AL+GE+AR+IQS+  + AA+V++ +P+   F      P ASV++    
Sbjct: 125 ETQVDKKVKYQVALQGELARSIQSLDKVKAAKVNLALPESTLFSDNEELPKASVVVNTRE 184

Query: 182 P--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIV 234
                 K  + I +LVA +V  L   +V ++D  G L++     AN      +   +++ 
Sbjct: 185 EEKLSPKEIQGIINLVANSVDKLTTENVVIVDQHGNLVSENLPMANGDISETVKWQMAMK 244

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSK 292
           +  + E +  I   L   LG +N    V AEL+ D ++ ++    +D      RS  + K
Sbjct: 245 RQYEKEKQDAIQSMLDKSLGQNNSVVRVNAELDFDNKEQKDELYSHDDAGPFVRSEEIKK 304

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           ++    T         + N+P   +       S    DK  +  NYEIN     T     
Sbjct: 305 ESGTDTTQPVVGVPGTDTNIPQYQEVDAAGGVST--YDKSSKIRNYEINKTEKVTKVAQG 362

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT----I 408
            ++   + V V     ++           +  +A I  IV+ A G+   R D        
Sbjct: 363 DVKYDYLTVAV--LVNSKATEPLKLGETEEEKIATIRNIVATACGLRENRKDESVRLEDN 420

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            S+ F++             MD + R   T    L FLV  +++    L   R     ++
Sbjct: 421 ISVAFVDFYTEPQAEAPGGTMDQIMRSPLT-PWLLAFLVVLIILLAWWLMQRRERRRAEE 479

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
             +       I     +   + TGL P +                           ++  
Sbjct: 480 EAEEAGIDTLIQEEIRVEDLIETGLSPEE------------------------KERRKIR 515

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
             +  +I  N E  A++L+ W   E
Sbjct: 516 EEIDRIINENPEIAAQVLKTWLAEE 540


>gi|237666941|ref|ZP_04526926.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237658140|gb|EEP55695.1| flagellar M-ring protein FliF [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 520

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/561 (19%), Positives = 223/561 (39%), Gaps = 54/561 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L+++ + F+   S  +   + + + I   ++  ++A F+  S  Y  L+  L+ +D   
Sbjct: 4   LLEKVKELFEKFKSQNKKIKIAVIASIAAVLIAIVSAVFYSTSNKYAVLFSNLDTTDAKT 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L+   ++ +I  + ++I VP + V K ++ LA       S ++GYEL D+ +SFG+
Sbjct: 64  VVDRLTTEKVESKIDSSTNTIWVPKNQVDKLKLELAPD---LKSGSTGYELMDEQSSFGM 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--I 180
           T    ++ + R LEGEI + I+S+  I  A+V+I   D   F K  A  +A+V I+    
Sbjct: 121 TDEEFKLKKKRMLEGEIEKVIKSLEPIENAKVNITEADNSVFVKDKAVGSAAVTIKLKEG 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-------EMERNILGKSLSI 233
                   +AI  +V+ ++ N+   +VTV+D    LLT +       +     + K    
Sbjct: 181 ATLTDDQVKAIVAVVSTSIENVPKENVTVIDQNSNLLTRDLNEEANGQASSETISKQHRA 240

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            +  +  ++ +I   L   +G  N  + V A L+ D++Q  E   DP+  +     L + 
Sbjct: 241 EEEYEDRLQKSIVSLLEPIVGKGNVTAVVKANLDFDSKQQTETTIDPNKVIVSQETLKEI 300

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               + +  +        + +    ++    S  N+ K+E+++NY+       T     K
Sbjct: 301 NNNGDGTVSQ------SPVDNNMSNEIVNNNSSSNSSKEEQKTNYDSGKSESKTIQAQGK 354

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RL+  V +NK                     E    V+ A GI++ RGD IT++ M F
Sbjct: 355 VDRLTATVYLNK-------------TLTQEERQEFEDGVANAIGIDATRGDQITVSGMTF 401

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             + +  +           + +  T++     ++G +L+  +    ++R     + ++  
Sbjct: 402 DTSSIDKAQATLEEMNAEEAANKKTMMMIAGGVIGAILIGAIIFFIIKRRKKKQEEEEQL 461

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           +      +  P        +                                     +  
Sbjct: 462 LDTLIDDTIIPKEPDTFDPIEFETKTQKSHLE-----------------------NEIKK 498

Query: 534 MIEINEERFAKILRKWARSEI 554
                 E+  +I++ W     
Sbjct: 499 YATEKPEQVVEIIKSWLTENE 519


>gi|167041778|gb|ABZ06520.1| putative Secretory protein of YscJ/FliF family protein [uncultured
           marine microorganism HF4000_093M11]
          Length = 461

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/456 (23%), Positives = 196/456 (42%), Gaps = 14/456 (3%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D  LQF     +L   + + + + + + ++  ++  F  N   +  L+  +E  D   
Sbjct: 8   LSDVRLQFQDFFGALSLPKRITILAALGIILIGMVSMIFVANRSSWAPLFSNVEPGDAAA 67

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I + ++  G +I V    V  AR+ LA + +    S  G+       S G 
Sbjct: 68  IVEKLQENQIPYMLAPGGRTIMVEPHRVDHARLTLAKEKV-LPGSGVGFLDLFATPSLGE 126

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-IN 181
           T F Q +    A EGE+AR I +I+ + +A+V + +P    F      PTA++ +    +
Sbjct: 127 TEFQQGVKFRVAQEGELARLISTINVVKSAKVSLAIPQKTLFSDNQVEPTAAIALNLTSS 186

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT---ANEMERNILGKSLSIVQAIQ 238
            +  K  E I HLVA+AV  L   +V + D TG LL+   +++     +  + S    ++
Sbjct: 187 GASRKQIETIVHLVASAVEGLSPRNVKITDQTGTLLSRGISDDSAGGKMNDNYSYKSRLE 246

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            E+E  + + +   +G D  R  V A L  D + I+E + DPD     S ++  ++    
Sbjct: 247 KELEAKVVRQIEEVVGKDRVRVNVSATLRFDRRTIKEQLIDPDQTSVVSEQIVDESSTGT 306

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            S P     V  N+P  + R+     ++    KK    N+E + + I       ++ RLS
Sbjct: 307 RSIPVGPAGVTTNLPEATGREAA---TVSEFSKKNSTRNFESSRREIILESAVGEVVRLS 363

Query: 359 IAVVVNKGRLTEVLGR-----SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++V+++  R   +          +    +     I  +V AA G N  RGD + + +M F
Sbjct: 364 VSVLLDNRRSQILDESGNSLGRTNTPWTEGEKETIIGLVKAAMGYNEERGDRVFVGNMPF 423

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
            E  +      ++    + ++    V+  +   +  
Sbjct: 424 -EAAVEEDKASEIEATRVRNKFILDVVRYVALGLSA 458


>gi|251779126|ref|ZP_04822046.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243083441|gb|EES49331.1| flagellar M-ring protein FliF [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 520

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 225/564 (39%), Gaps = 55/564 (9%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  +L+++   ++   S  +   + +    +  I+  ++   + +S  Y  L+  L+  D
Sbjct: 1   MNKLLEKVKGLWEKFKSQSKKIKIAIFISCVAVIIAIVSTIIYTSSNKYQVLFSNLDPKD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I   L+E  +  +I   G +I VP+  V + R+ LA +     S +SGYEL D  +S
Sbjct: 61  AQTILAKLNEQKVTTKIQ--GDTILVPNDKVDQLRLELAPE---LKSGSSGYELMDSGSS 115

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--I 177
           FG+T    ++ ++R  EGE+ +TI+S S I +ARVHI       F K      A+V   +
Sbjct: 116 FGMTDEEFKVKKLRMQEGELEKTIKSFSQIESARVHITPSTDSVFVKESTPGKAAVYLEL 175

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-------RNILGKS 230
           +  +       ++I  LV+ +  N+   ++ V+D    LLTAN  +          L K 
Sbjct: 176 KTGSEITKDQVKSIVALVSGSTENVPKENIEVIDDKMNLLTANLNDDENEMMSSESLDKQ 235

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
            S+ +  + +++  I   L   +G D  ++ V  +L+ D++Q  + V DP+ KV  S + 
Sbjct: 236 YSLEKNYEGKLQKEIVSLLEPVIGKDKVKATVNVDLDFDSKQQTQTVLDPN-KVVVSQQT 294

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            K+   +      S   V+ N+   S+       +  N+ ++E+++NYEI          
Sbjct: 295 IKEVNNTGADGNISESPVDNNI---SNTTDDTNNTNSNSSREEQKNNYEIGKTETKVISA 351

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
             +++R++ +VVV+                  +    I   VS A G NS RGD I++  
Sbjct: 352 PGEVKRMTASVVVDGN-------------LDAATQQAIENAVSNAIGFNSVRGDQISVLG 398

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           M+F  +   ++ +   +F     +                   ++ + A+  +  I    
Sbjct: 399 MNFDPSLKEDAQSQVDAFNAEAKQKEMQK--------------YMIMGAIALIAIIIVIV 444

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +   +           ++  D    +      F          N          
Sbjct: 445 ILVKKRRKNAANEYDDETQLLDVVIGDEKEAEVFEPIEFETKNEKTHMEN---------E 495

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
           +        E+  +I++ W   + 
Sbjct: 496 IKKYATDKPEQVVEIIKSWLSEDE 519


>gi|222530139|ref|YP_002574021.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456986|gb|ACM61248.1| flagellar M-ring protein FliF [Caldicellulosiruptor bescii DSM
           6725]
          Length = 560

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/569 (18%), Positives = 221/569 (38%), Gaps = 29/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L    +  +S  +++ ++      + ++  + A +    PHY  ++  L+  +   
Sbjct: 5   LNDYLKSIKEKWSSFSKSQKIMFVVSSSIILLSVIVAIYITTRPHYITIFSGLDPKEAAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   LS+  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   
Sbjct: 65  IQNILSDQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI + ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TEADKRRTFIKLKESEIQQALKQMSDYIEDAVVNLSIPEDYTFALKSEAEKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L +  A 
Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQLKIAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  I + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+
Sbjct: 245 KNEIEKKIKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  S        + N    + +             K +E  NY+ N K I T     
Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNAPQYPITSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406
            +     +   V+      T+     ++Q K  S+     +      +           I
Sbjct: 365 TINYDKSSIAVVLYRYVTYTQEDFEKSEQAKNMSWAQFKLQNQNNKRSFLTDQKEVETII 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R     ++ +   +  LL+       L +  + 
Sbjct: 425 NLIKSATGIQNVTVEGYEIPTFVDKPQRQIP--VDYIYVALAFLLLMVFAASVLIK-ASR 481

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             +K  E+ G   L            L   +        +            +  +   Q
Sbjct: 482 SKSKTVELAGVGPLEISEGKPTAEEILHEAEKRKEPEVEEI----------NVEEFGVSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  +++   E  A++LR W   + E
Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|329896193|ref|ZP_08271387.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088]
 gi|328921936|gb|EGG29302.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC3088]
          Length = 640

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/589 (18%), Positives = 209/589 (35%), Gaps = 53/589 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +        +  + A  +L+ ++LF+     +NS  Y ++   +   D      AL  +
Sbjct: 55  VRRVLQQPAVKRSMPAISVLLAVLLFVIFGSMLNSTGYRSISNGMSEPDRQASYDALLAS 114

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
               RI+     I VP     +A++ LA+QGLP S+   GY   ++  S   + FM+++ 
Sbjct: 115 QYKVRINPASGMIEVPDGSYQQAKLFLASQGLPRSAIAGGYSALNENASMTQSQFMEQVQ 174

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188
              A+E E+A+TI  I  I +ARVHI +     F +      ASV+++            
Sbjct: 175 YNNAMELELAKTISQIDSIESARVHIAVNKQSVFVRERMPSKASVVVKPYFGRVVTQPQV 234

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTG-KLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247
           ++I HLV+++VP +   DVTV+D+ G  L + +  +     K++   + ++ E+   I  
Sbjct: 235 QSIIHLVSSSVPYMSTTDVTVVDNYGILLSSDSSDDSLGTQKNIDFERRMEAELSGRIVD 294

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            +   LG  N +S V  +++    +     +D      ++                    
Sbjct: 295 LIMPVLGEGNVKSIVNVDVDFTETESTFEEFDRSGTGPKTRSEVLSNDEVIGQAAAGIPG 354

Query: 308 VEQNMPHVSDR------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              N+   +               LE T + +   NYE++           ++  L+ A+
Sbjct: 355 GVSNIAPDAPELEATGAAAGAGAGLETTQRTQTTRNYELDKAVRYVKEQPGRVLGLTAAI 414

Query: 362 VVNKGRLTE---------------------------------------VLGRSADQGKID 382
           ++N+  L +                                                ++D
Sbjct: 415 MLNESALRDLVLIKLRQAAGTTSNSTPLEGRLAPDSAGDVNATSVGLEEFSEQQINEQMD 474

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
             +     +V  A   +  RGD+I I +  F                + +          
Sbjct: 475 IEIERFRGLVIRALPFDDVRGDSINIAAAPFY-IDAPIEIITPWWEQEGIVEWGKHGFTV 533

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
           + FL   LLV    +       ++DD        K     P    A+  G    +  A  
Sbjct: 534 IAFLFLLLLVVRPIMAFYMPKPSVDDLAVLAEKMKDGELTPAELEALEKGETLEEIKAKL 593

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
              +   S S ++    N+Y  K +   +  ++  +  R A +L+K  +
Sbjct: 594 KPKK--SSISADMLDTANTYDDKVAL--IRLLVAEDSGRVANVLKKMIK 638


>gi|146296280|ref|YP_001180051.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409856|gb|ABP66860.1| flagellar M-ring protein FliF [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 562

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 112/569 (19%), Positives = 223/569 (39%), Gaps = 27/569 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L +  +    L +++ ++L     + I+  + A +    PHY  L+  L+  D  +
Sbjct: 5   LNDFLKRIKERLDKLSKSQKIMLIVSSSIIILSVIIALYVTTRPHYVVLFSGLDPKDAAQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  ID ++++ G++I V  + + KA++  A  G P SS  +  +     +S   
Sbjct: 65  IQQTLLEQKIDSKVTNGGTTILVKDTDIDKAKMVAALSGYPKSSEITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI R ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TESDKRRTFIKLKESEIQRALKEMTDYIDDAVVNLSVPEDYTFALKDETTKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L+    +    I  K L I  A 
Sbjct: 185 KKSLSSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSFDSSEGISSKQLQIKIAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  + + L  ++   ++ + +V  ++N D Q++ E  Y P   D  +  S + +K+
Sbjct: 245 KNEIERKVKELLGNYVSSPEDVKVSVNLDMNFDMQKVSETKYSPVLEDGGIVVSRKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  +        + N    + +          +  K +E  NY+ N K I T     
Sbjct: 305 EAQSTNAGANGIPGTDTNPTQNNPQYPLSSQGGQSSYSKTDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKI---DSYLAEINKIVSAATGINSRRGDTI 406
            +     +   V+       +     ++Q K    D +  +      +         + +
Sbjct: 365 TINYDKSSIAVVLYRYVTYRQEDYEKSNQAKTMSWDEFKLQNQNNKRSFLTDQKEVENIV 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R     ++ +      LL+    +  L +   +
Sbjct: 425 NLVKSATGIQNVTVEGYEIPTFVDKPQRQIP--LDYIYVAFAFLLLMAFAISLLIKSLKV 482

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             AK+ E+ G   +S P     V   L            Q         +  I  +   Q
Sbjct: 483 KPAKQVELAGVGGVSIPSEQEKVEEILQE---------AQKKKEEQPIEEINIEEFGVSQ 533

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  ++    E  A++LR W   + E
Sbjct: 534 YEKQIDKLLREKPEVVAQLLRNWLNEDWE 562


>gi|312135854|ref|YP_004003192.1| flagellar m-ring protein flif [Caldicellulosiruptor owensensis OL]
 gi|311775905|gb|ADQ05392.1| flagellar M-ring protein FliF [Caldicellulosiruptor owensensis OL]
          Length = 560

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/569 (18%), Positives = 221/569 (38%), Gaps = 29/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L    +      +++ ++L     + ++  + A +    PHY  ++  L+  +   
Sbjct: 5   LNDFLKNIKEKWDKFAKSQKIMLVISSSIILLSVIIALYITTRPHYVTIFSGLDPKEAAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L+E  ID ++++ G++I V  + V +A++  A  G P +SS +  +     +S   
Sbjct: 65  IQNILNEQKIDSKVANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI   ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TESDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSVPEDYTFALKDEATKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L++N  +    +  K L I  A 
Sbjct: 185 KKSLGSNQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSSNSSDTTEGLSSKQLQIKIAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  + + L +++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+
Sbjct: 245 KNEIEKKVKELLGSYVSSPEDVKVSVNLDMNFDMQKISETKYFPVLEDSGIVVSKKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  S        + N    + +             K +E  NY+ N K I T     
Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTTQYPISSQGGQSTYTKTDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406
            +     +   V+      T+     +DQ K  ++     +      +           +
Sbjct: 365 TINYDRSSIAVVLYRYVTYTQEDFEKSDQAKNMNWAQFKLQNQNNKRSFLTDQKEIETIV 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R     ++ +   +  LL+       L +  + 
Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDRPQRQIP--VDYIYVALAFLLLMVFAASLLIK-ASK 481

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
              ++ E+ G   +            L   +        +            I  +   Q
Sbjct: 482 SKPRRLELAGVGPVEISEEKPVAEEILQEAEKRKEAEVEEI----------NIEEFGVSQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  +++   E  A++LR W   + E
Sbjct: 532 YEKQIDKLLKEKPEIVAQLLRNWLNEDWE 560


>gi|154249519|ref|YP_001410344.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1]
 gi|154153455|gb|ABS60687.1| flagellar M-ring protein FliF [Fervidobacterium nodosum Rt17-B1]
          Length = 535

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 96/561 (17%), Positives = 204/561 (36%), Gaps = 44/561 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
            +D   +F +   +L + + L++  +I   I+  +     VN+P Y  L       D   
Sbjct: 7   FVDWFAKFPEKWKALQKGQKLVIIMIIASVILAIILLAI-VNAPKYVLLLTTRTEQDAGS 65

Query: 63  ISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +   L    I +++   G+ I +PSS  V + R+ LA+ G+  S S+ G+E+ D+ +  G
Sbjct: 66  VIQQLETLGIPYKVEA-GNRILIPSSYNVYEVRMRLASTGI-LSGSSRGFEILDQTS-LG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIR 178
            TSF +++    AL+GE+ RTI +I G+ ++RV + +P    + +      R +  V++ 
Sbjct: 123 ATSFDKQVRYQIALQGELERTISTIKGVQSSRVVLTLPKYTYYVRGEMSEPRASVMVVMD 182

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQ 235
                  +  + I  L+  AV  +   ++ ++D TG+ LTA    +    +    + +  
Sbjct: 183 PGQSLSKEQVKGIVSLIQGAVEGIKTENIKIIDQTGQDLTAMLNLDQSTALASTKMELKV 242

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL--SKD 293
            +++  +  I   L    G          +LN +  + +   Y   +K E  +R   ++ 
Sbjct: 243 NLENYYKQKIKVPLENIFGPGRVEVIPDVKLNWEKVEKQITTYTAPNKKEGLVRSKETES 302

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-Y 352
              + +      V  E N+P  +              K  E  NYE+N        +   
Sbjct: 303 EYSTTSQGAGGPVGTESNIPPTTYESTEGTGVT-TYQKSHEIVNYELNQVIENIVKNTEG 361

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-TITITSM 411
           ++E ++++VV++             +   D     I  I+  +   N+  G  T  +  +
Sbjct: 362 EIENITVSVVIDSSSTVLE------RTSKDEVQNYIKTIIEKSISANTPNGSVTYAVAFL 415

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F             +  +I       ++  L  ++         +   +        ++
Sbjct: 416 PFSREIQEQFYKELQTTTEIQKLRTRLILVLLASILIFFASYLGLIQFRKIKARKMIQER 475

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            ++  +                   +  A+                       +Q    L
Sbjct: 476 YKLLQEEAQRALEAIEQAEEVQPGGEEEAI----------------------LEQLKEYL 513

Query: 532 LHMIEINEERFAKILRKWARS 552
             + E + E  A +L+ W   
Sbjct: 514 QQVSEASPEEVATVLKVWISE 534


>gi|332187937|ref|ZP_08389670.1| flagellar M-ring protein FliF [Sphingomonas sp. S17]
 gi|332012098|gb|EGI54170.1| flagellar M-ring protein FliF [Sphingomonas sp. S17]
          Length = 580

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 115/536 (21%), Positives = 211/536 (39%), Gaps = 41/536 (7%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +SP    L+  L  +D   ++ ALS ANI  +I+D   +++V      KAR+ LA QGLP
Sbjct: 63  SSPPQKTLFENLSDADKQAVTTALSAANIKSKINDGTGALTVNEEDYSKARMLLAGQGLP 122

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
              +  GY + D++   G++  ++     +A E E+AR+I+ I  +  ARVH+ MP+   
Sbjct: 123 KQ-APGGYAILDQLP-MGVSRAVEGERLRQARESELARSIEEIDAVAEARVHLAMPEASV 180

Query: 164 FRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
           F +  A P+ASV+++            ++I +LVA++VP +   DVTV+D  G LL+   
Sbjct: 181 FVRDKASPSASVVLKLNAGRALSEAQVQSIINLVASSVPGMKPEDVTVVDQMGGLLSKKG 240

Query: 222 -MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP 280
               +   + +   + ++ +    + + L   +G  NF + V A++N+D        YD 
Sbjct: 241 ADGASGDDRRIDFQRRLEEKYRTQLIQLLTPLVGAGNFTAEVQADVNLDETSATSERYDK 300

Query: 281 DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD--------------------RKV 320
           D    R+   +    + + + P        N P  +                        
Sbjct: 301 DGA-LRAETGNWTGNQKDPTPPGGIPGALSNTPPPASTLQQPQAANGANGAPPADGKPVA 359

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
             P           Q  Y++N +   T      ++RL++AV++            A   +
Sbjct: 360 GGPGLNPEKQSDAFQRAYDLNKQVSVTRAAPGSIKRLTVAVLLR---------DPATGKR 410

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               + +I+ +V +A G + +R D +T+ S  F +  + +            +     V 
Sbjct: 411 SQMEITQISDLVKSAVGFDQQRNDNVTVISRKFADAGVEDKRA------WYDNSWLPIVA 464

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
                LV  LLV  LG+  L +       +        + +    ++A   G    D   
Sbjct: 465 RNATALVIALLVLLLGVRPLVKAMTKKKDEAEAAKALPMGAADGTATAAQGGAPRVDADG 524

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                Q     +  L     +       +++      N  R A  +R   RSE + 
Sbjct: 525 QPLPEQIAIQPAVTLDEIEETNNFDDRIVKVRGFTRDNPARAALAIRDMIRSEAQS 580


>gi|261419419|ref|YP_003253101.1| flagellar MS-ring protein [Geobacillus sp. Y412MC61]
 gi|319766234|ref|YP_004131735.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52]
 gi|261375876|gb|ACX78619.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC61]
 gi|317111100|gb|ADU93592.1| flagellar M-ring protein FliF [Geobacillus sp. Y412MC52]
          Length = 528

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 94/532 (17%), Positives = 186/532 (34%), Gaps = 65/532 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P+S     Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I +P 
Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161

Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F        +AS++++         +  +A+ HLVA +VPNL   ++ +++   +  
Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221

Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
                  N  G        I + I+ +I+  + + L   +G D    +V A+++   ++ 
Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281

Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            E +  P        +  S++  K+      + P  A     N   V   +     +  N
Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGATNGN 339

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            ++ EE  N E+N          YK+  L I V+V      +    S     ++     +
Sbjct: 340 YERTEETINNEVNKIKKQIVESPYKIRDLGIQVMVEPPDPNDPN--SLPPETVNDIQKLL 397

Query: 389 NKIVSAAT-------GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
             IV  +          +    + I ++   F     F                      
Sbjct: 398 GTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWY--------- 448

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
                                            G  ++L    +          ++    
Sbjct: 449 -------------------------------ASGAGALLLVALLLFLWLRRRREDEEEEE 477

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       S   +L     +  +     +L  + +   + FAK+L+ W   E
Sbjct: 478 EHLFTPPLSTEPDLPEPPETE-AALRRRQLERLAKEKPDEFAKLLKTWLSEE 528


>gi|253682590|ref|ZP_04863387.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873]
 gi|253562302|gb|EES91754.1| flagellar M-ring protein FliF [Clostridium botulinum D str. 1873]
          Length = 524

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/567 (19%), Positives = 219/567 (38%), Gaps = 57/567 (10%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  I +Q  + F+    L + + +  + ++L  I+  +     +N+  Y  LY  ++ +D
Sbjct: 1   MDKIKEQFRKLFEKFKELSKIKKIAFSILVLGIIIGIVYLVISLNTTKYAVLYKDMDPND 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L++  +++++ +N  SI VP     + R+ LA Q    +S + GYE+ D  ++
Sbjct: 61  AQTVMAKLADKKLEYKVENN--SIKVPEDKAAELRMELAPQ---LTSGSKGYEILDDGDT 115

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-- 177
           FG+T   +E+   RALEGE+AR I+S+  +  A+V +VM   G+F K     +ASV +  
Sbjct: 116 FGMTDKERELKYKRALEGELARDIKSLPEVKEAKVLLVMQQEGNFFKQEDPGSASVTLEF 175

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGD---VTVLDSTGKLLTA-------NEMERNIL 227
                   +  +AI  LV+ +V NL   +   V V++   + L+        N+   ++ 
Sbjct: 176 ETGKKVTKEQIKAIVALVSGSVKNLPKENIKVVGVVNGKTQDLSEDLFKEDGNKDISSVT 235

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K  +  + ++ E    I   L    G    ++AV  ++N D  +    ++DP+  V RS
Sbjct: 236 EKQENYKKNLEKEYVKKIMNVLTPKYGEG-VKAAVNVDVNFDASEKTSTLWDPN-NVVRS 293

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
               KD + S+      + T    + +              +  ++   NYE+       
Sbjct: 294 EETEKDTENSK-----GSKTSASPVDNNMSNTYNSKDENGTSTHEKTTKNYEVGKIEQKV 348

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                K++++S +V +N   L+ V               +IN +V+ A   +  RGD ++
Sbjct: 349 VGAPGKIKKISASVTINDENLSPVD------------KDKINSLVAGAISYDESRGDIVS 396

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           +  M F E    ++        +         I          L    G+ A  R     
Sbjct: 397 VEGMKFNEVNESDAAEEAKKKAEEQKAKEKAFIYKCAGGALLALAIIAGIVAFIRKRRKK 456

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
           +  + EV   SI      +                       +      +      +   
Sbjct: 457 NESEEEVVSDSIDMLIDDNVE--------------------PTEQLKSINFDEENENTYV 496

Query: 528 DLRLLHMIEINEERFAKILRKWARSEI 554
           +  +        E+  +I++ W   + 
Sbjct: 497 EKEIKKYATEKPEQVVEIIKAWMAEDE 523


>gi|56419754|ref|YP_147072.1| flagellar MS-ring protein [Geobacillus kaustophilus HTA426]
 gi|56379596|dbj|BAD75504.1| flagellar basal-body M-ring protein [Geobacillus kaustophilus
           HTA426]
          Length = 528

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/532 (17%), Positives = 187/532 (35%), Gaps = 65/532 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P+S     Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I +P 
Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161

Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F        +AS++++         +  +A+ HLVA +VPNL   ++ +++   +  
Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221

Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
                  N  G        I + I+ +I+  + + L   +G D    +V A+++   ++ 
Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281

Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            E +  P        +  S++  K+      + P  A     N   V   +     +  N
Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGATNGN 339

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            ++ EE  N E+N          YK+  L I V+V      +    S     ++     +
Sbjct: 340 YERTEETINNEVNKIKKQIVESPYKIRDLGIQVMVEPPDPNDPN--SLPPETVNDIQKLL 397

Query: 389 NKIVSAAT-------GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
             IV  +          +    + I ++   F     F   T                  
Sbjct: 398 GTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTESTPDRPAWWWY--------- 448

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
                                            G  ++L    +          ++    
Sbjct: 449 -------------------------------AAGAGALLLVALLLFLWLRRRREDEEEEE 477

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       S   +L     +  +     +L  + +   + FAK+L+ W   E
Sbjct: 478 EHLFTPPLSTEPDLPEPPETE-AALRRRQLERLAKEKPDEFAKLLKTWLSEE 528


>gi|188586017|ref|YP_001917562.1| flagellar M-ring protein FliF [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350704|gb|ACB84974.1| flagellar M-ring protein FliF [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 519

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 202/568 (35%), Gaps = 64/568 (11%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   + +   Q  +   +L + + +  A+ + + I+  +     +    Y  +   L+  
Sbjct: 1   MNEMLANAKNQSQQFWGNLSKGQKITFATALGLFIIGTLVLSVSMLQTDYTEVARDLDPR 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D + I+  + +  + ++I D GS I VP     + R+ LA  GLP      GYE  D   
Sbjct: 61  DASEIAEMIEDMGVSYQIEDGGSRILVPEDDHDQVRLELAGAGLPRGGV-LGYEELD-TQ 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
             GLT   +E+ +  ALEGE+ RTI+    +  ARVH+V+P+   F +      A+V + 
Sbjct: 119 QLGLTESEREMRQKIALEGELVRTIRRYPEVEDARVHLVLPERSIFEETREDSQAAVFLD 178

Query: 179 AINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------- 229
                    +   +I +LVA +V  L   +VT+      L    + +             
Sbjct: 179 LEPHRELTEQQISSIVNLVAHSVEGLTPKNVTLTSGDRMLSDKTQSDDKNSPSAGSEVEK 238

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVER 286
            LSI +  Q+ ++ ++   L   +G  N  + V AEL+ D  +    +++P   D  +  
Sbjct: 239 RLSIQEEFQNTLQSSVESMLENIVGRGNVTARVNAELDFDEFESFSELFEPVEGDEGILV 298

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S+   ++    E                             + ++ +E  NYE+N     
Sbjct: 299 SMHREEEFYSGEDVSQGGVPGDPAEGTPEYQEVT-GEGGSFDYERIDETRNYEVNKIEER 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-T 405
           +      L +LS+AV VN             Q   +  +  I  +V  A GIN    +  
Sbjct: 358 SRLAPGALNKLSVAVAVN-------------QELDEDEMDSIEALVEDAVGINLENENHQ 404

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           IT+  MDF  +              + ++     +     ++  L +       + +   
Sbjct: 405 ITVEQMDFDTSLQDMLAAQHEKKQQMAAQQRWITLGIGAAVLVVLALIG---RKIYKTIR 461

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                +  +  + ++     +S      +P                              
Sbjct: 462 DRKEIEDRLEREQMVQDQAAASEDIEPEVPK----------------------------- 492

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               ++    E   E FAK+L+ W   E
Sbjct: 493 -VQKQISDFAEKKPEEFAKVLKAWLAEE 519


>gi|103488413|ref|YP_617974.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256]
 gi|98978490|gb|ABF54641.1| flagellar M-ring protein FliF [Sphingopyxis alaskensis RB2256]
          Length = 551

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 196/552 (35%), Gaps = 44/552 (7%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                     +  + A  +   I +   A F + +     L+  L+ +D   ++ AL   
Sbjct: 30  LTQFVRQPAVQRALPAIAMTAAIGIAALAYFTMQTAPQAQLFAGLDDADKAAVAEALQAQ 89

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I   I     +++V +  + +ARI LA QGLP ++ +   +        G +  ++   
Sbjct: 90  GIGHSIDGTTGALTVDADKLHQARIALAGQGLPKAAPSG--DSLIAALPMGSSRAIEGEA 147

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188
              A E +++RTI++I  + +ARVHI   +   F +     TASVM+             
Sbjct: 148 LRSAREADLSRTIETIDAVKSARVHIAAAEPSLFVRDDKPATASVMLTLQNGRALGDGQV 207

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           +AIR LVA++VP ++   V+V+D  G LL+      ++    L +   ++      ++  
Sbjct: 208 QAIRFLVASSVPGMNADQVSVIDQRGALLSDTASGSDMKAFQLQL--QVEDRFRRALDTL 265

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   LG  N+   V A+++M   Q     +  + +   S ++++    +  +        
Sbjct: 266 LGPMLGAGNYTVEVHADVDMSESQATRESFPENDRALTSEQITRSVSGTANAPAVGIPGA 325

Query: 309 EQNMPHVSDRKVPLPRSLE--------NTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
             N P  +                       +     YE+  +   T     KL R+S+A
Sbjct: 326 LANQPPQATTITAEGPQPAPANAPLPGTESNENAARAYEVGREISVTHSPQGKLRRVSVA 385

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V +N+G+          +    + LA+I+ +V  A G ++ RGD + I    F   +   
Sbjct: 386 VALNQGK----------KALTQADLAKIDALVKGAIGYDAARGDMVAINQRPFAPVEDTA 435

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                  +   L +    ++ AL+  +                    +    E    +  
Sbjct: 436 PAFYDQGWFLPLVKQVGAILAALLAFLFIGRPMIRAARQRAAARLEQNQALEETLLAATD 495

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
            P   S A +  +      A  S                     +     +   +  +  
Sbjct: 496 RPALASGANSREITLEMIEAAPS--------------------YEARANLVRAFVRQDSA 535

Query: 541 RFAKILRKWARS 552
           R A ++R   + 
Sbjct: 536 RAALVVRHLMQE 547


>gi|229896276|ref|ZP_04511446.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229701199|gb|EEO89228.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
          Length = 475

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 187/482 (38%), Gaps = 58/482 (12%)

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G+EL D+   FG++ F ++I   RALEGE++RTI ++  ++  RVH+ MP    F +
Sbjct: 16  GAVGFELLDQE-KFGISQFSEQINYQRALEGELSRTIGTLGPVLNVRVHLAMPKPSLFVR 74

Query: 167 IGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224
               PTASV +  +           AI ++V+++V  L  G+VTV+D TG+LLT ++   
Sbjct: 75  EQKSPTASVTLALQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQTGRLLTQSDSAG 134

Query: 225 N-ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
             +    L     +++  +  I   LA  +G  N  + V A+++  +++  +  Y P+  
Sbjct: 135 RDLNASQLKFTSEVENRYQRRIENILAPMVGNGNVHAQVTAQVDFASREQTDEEYKPNQA 194

Query: 284 VERSIRLSKDAQRSETSQP---ESAVTVEQNMPHVSDRKV-------------------- 320
             +    S+    SE               N P V+                        
Sbjct: 195 ANQGAVRSQQVSTSEQLGGTNVGGVPGALSNQPPVAPIAPIEIPQPAGAAANNAAPANTA 254

Query: 321 ---------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
                       ++  +  + ++ +N+E++     T      ++RLS+AVVVN       
Sbjct: 255 ATANANTTATAAKASSSNSRHDQTTNFEVDRTIRHTQQQAGMVQRLSVAVVVNYTS---- 310

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
                        LA++  +   A G ++ RGDT+ + +  F  +      ++       
Sbjct: 311 DKAGKPIALSKDQLAQVESLTREAMGFSTVRGDTLNVVNTPFTASDDTRGSSLPFW---Q 367

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTT 491
               F  ++NA  +L+  L+   L    LR +              + +     + A  T
Sbjct: 368 QQSFFDQLLNAGRYLLILLVAWILWRKLLRPMLAKKQVADKAAASVNNIV--QTAQAAET 425

Query: 492 GLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                + +AL   NQ   S              +    R+  + + +    A ++R+W  
Sbjct: 426 VKQSKEELALRKKNQQRVSA-------------EVQAQRIRELADKDPRVVALVIRQWMS 472

Query: 552 SE 553
           ++
Sbjct: 473 ND 474


>gi|302874589|ref|YP_003843222.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B]
 gi|307690800|ref|ZP_07633246.1| flagellar MS-ring protein [Clostridium cellulovorans 743B]
 gi|302577446|gb|ADL51458.1| flagellar M-ring protein FliF [Clostridium cellulovorans 743B]
          Length = 522

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 202/561 (36%), Gaps = 52/561 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I D + +       + + R + +  +  V I+  +A         Y  L+  L+ +D   
Sbjct: 4   IADLIAKIKGIFNGMSKVRKISIGLITAVVIVAIVALIITTGKTKYTALFNNLDATDSQN 63

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L E  I +++ ++ ++I VP   VG+ R+  AA      S + G E+FD  +  G+
Sbjct: 64  IVTKLKEEGIPYKVENSTNTIMVPDEQVGQLRLQYAAD---IKSGSIGLEIFDTSSQLGI 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           +     +   RAL+GEI RT++S   +  A+V+IV+P+  +F K  A  + S+ ++    
Sbjct: 121 SDAEFNVKYQRALQGEIERTVKSFEQVEDAKVNIVLPEDSTFVKDTAPASVSITLKLKPG 180

Query: 182 -PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA------NEMERNILGKSLSIV 234
                +  +AI  LV+ +V NL   ++ ++D+  +LLT        +         L   
Sbjct: 181 TELSEEQVKAIVSLVSTSVKNLPKENIQIVDNNMRLLTDKLFKGSEDESSVTASTQLEEK 240

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
              +  +E  I   L    G    ++ V A LN D+        D    +         +
Sbjct: 241 MKFEDYLEEKILSQLEPMYGQGKVKANVNAVLNFDSVSTETTTVDKTPPIVSQNISINAS 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN-YK 353
             + T+          N+ +   +   +           + +NY  + K I    +    
Sbjct: 301 DANNTTGNSPVDNNLSNVINEYMQNGNI-------SSANQTTNYSTDGKVIERKQNALGN 353

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +  +S AV ++                 +  LA++ K+V+   G   +  D   + + +F
Sbjct: 354 VTAVSAAVAIDN------------AELTERQLADVKKLVNKTIGQAKQNEDETIVMAYEF 401

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
              +L  S    +  M+   +  A      +  +G  +V  L   AL         ++ E
Sbjct: 402 N-PELKASIQKSLEEMEAAQKAEAQKKLYTMIGLGAAVVIGLVAFALVLRKRRSKKEELE 460

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           +     +    +         P D       +                         +  
Sbjct: 461 MIETEDVVLEEMPIENEINFKPLDLEQKSQKDHIE--------------------DEIRK 500

Query: 534 MIEINEERFAKILRKWARSEI 554
             +   ++ A+I++ W  S+ 
Sbjct: 501 YAQNKPDQVAEIIKSWLVSDE 521


>gi|297530606|ref|YP_003671881.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3]
 gi|297253858|gb|ADI27304.1| flagellar M-ring protein FliF [Geobacillus sp. C56-T3]
          Length = 528

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/532 (17%), Positives = 186/532 (34%), Gaps = 65/532 (12%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           FF        LY  L   +  +I   L +  +   ++D G++I VP   V   ++ LAA+
Sbjct: 43  FFATRTEMVPLYSNLSPQEAGQIKATLDQRGVPAEVADGGTTIKVPKEQVDALKVELAAE 102

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           G+P+S     Y  F +  SFG+T     + +++A++ E+A  I++I G+  A+V I +P 
Sbjct: 103 GIPNSGV-IDYSFFGQNASFGMTDNEFNMVKLKAMQTELANLIKTIDGVEDAKVMINLPQ 161

Query: 161 MGSFRKIGA-RPTASVMIRAINPS--VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
              F        +AS++++         +  +A+ HLVA +VPNL   ++ +++   +  
Sbjct: 162 PSVFVSDEKGEASASIVLKTKPGYQFSDEQIKALYHLVAKSVPNLSTDNIVIMNQFFEYY 221

Query: 218 TANEMERNILG----KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI 273
                  N  G        I + I+ +I+  + + L   +G D    +V A+++   ++ 
Sbjct: 222 DLKNDGENSTGTTFASQQQIKKQIERDIQRQVQQLLGTMMGQDKVVVSVTADVDFTQEKR 281

Query: 274 REIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
            E +  P        +  S++  K+      + P  A     N   V   +     +  N
Sbjct: 282 EENLVSPVDEKTKQGIAVSVQRIKETYSGSGAPPGGAAGTGAN--EVPGYQNANGATNGN 339

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
            ++ EE  N E+N          YK+  L I V+V      +    S     ++     +
Sbjct: 340 YERTEETINNEVNKIKKQIVESPYKIRDLGIQVMVEPPDPNDPN--SLPPETVNDIQKLL 397

Query: 389 NKIVSAAT-------GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
             IV  +          +    + I ++   F     F                      
Sbjct: 398 GTIVRTSIDKSEAQTLTDQDINNRIVVSVQKFNGKPTFTELAPDRPAWWWY--------- 448

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
                                            G  ++L    +          ++    
Sbjct: 449 -------------------------------AAGAGALLLVALLLFLWLRRRREDEEEEE 477

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           +       S   +L     +  +     +L  + +   + FAK+L+ W   E
Sbjct: 478 EHLFTPPLSTEPDLPEPPETE-AALRRRQLERLAKEKPDEFAKLLKTWLSEE 528


>gi|28211331|ref|NP_782275.1| flagellar MS-ring protein [Clostridium tetani E88]
 gi|28203771|gb|AAO36212.1| flagellar M-ring protein fliF [Clostridium tetani E88]
          Length = 521

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 215/562 (38%), Gaps = 53/562 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRIL----ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           +++L Q+F +     +           ++ +  I   ++   +++ P Y  L+  +E  D
Sbjct: 1   MNKLSQWFNTLKDKIKDLSKKKKIAYGAIAVGIIGALISGIVYISKPKYAILFSNMEQED 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  +   L ++  +F++  +G++I VP   V   R+ + +Q +P  + ++G+EL DK   
Sbjct: 61  MGTVYNKLKDSKENFKV--DGNTILVPREKVDSLRMEVMSQ-VPIKNGSNGFELLDKN-K 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           FG T    +I   RAL+GEI RTI+    I  ARVH+VMP+   F K      AS+ ++ 
Sbjct: 117 FGATEEEMKINYQRALQGEIERTIKGFPEIENARVHLVMPEDSVFIKDDTPAKASITLKI 176

Query: 180 INP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDST---GKLLTANE--MERNILGKSLS 232
                      +AI  L + +V NL   +V + D+     K L   +       + K  +
Sbjct: 177 KPYKKITDNQVKAIVALASGSVKNLPKENVEINDTNQILTKDLFKEDEFDSSESIQKQQA 236

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + +  +  +E  +   L A  G +  +  + A+LN D  Q    +YDP     +++ +S+
Sbjct: 237 LKKEYEKTLEDKVTSMLEAVYGKERAKIKINADLNFDAIQDESTIYDP-----KNVVVSE 291

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
              +  T       T    +      +            +E   NYE++ +   T     
Sbjct: 292 KNVKETTPGGNDLATGGSPVDDNMRNRAGNNEKDALVTHEENVRNYEVSERKNKTLRAPG 351

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + RL+++VV++                 ++    +   V +A G N +RGDTI++  + 
Sbjct: 352 SVRRLTVSVVLDGN-------------LDNATRNAVQNTVKSAVGYNEQRGDTISVEGLP 398

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F           + +  + L+R     +  ++  +G L +  +    +++  N +D +  
Sbjct: 399 FDTAYRERIEKDKEAMEEELARDKKMNLYKILAALGVLALGIIIGILVKKRRNKEDNELD 458

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            +     +      +                                        +  + 
Sbjct: 459 LINEGLDVVIDDEITE--------------------EKPKFKPIQLEEESEGAYIEREIR 498

Query: 533 HMIEINEERFAKILRKWARSEI 554
                  ++  +I++ W   + 
Sbjct: 499 KYATEKPDQVIEIVKAWLAEDE 520


>gi|254436608|ref|ZP_05050102.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307]
 gi|198252054|gb|EDY76368.1| flagellar M-ring protein FliF [Octadecabacter antarcticus 307]
          Length = 602

 Score =  271 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/600 (16%), Positives = 217/600 (36%), Gaps = 61/600 (10%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +S       +    A      ++L +     + +P    L+  L  ++   +  AL    
Sbjct: 5   RSFYMQPAVQRAFPAVAAAFLVVLGLILYLLLQAPQRTTLFASLPEAEKAAVMDALRNNG 64

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           +D +I      I+VP +    +R+ LAAQGLP S    GY +       G +  ++ +  
Sbjct: 65  MDVQIDSTTGDITVPVADYHSSRMSLAAQGLPQS-MPDGYSVL-SDMPMGTSRSVENMRL 122

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAE 189
            ++ E E+AR+I  I+ I A+RVH+ +P+  +F +    PTASV +  +A      +   
Sbjct: 123 KQSQEIELARSINEINVISASRVHLAIPERSAFARNAQNPTASVFLQVQAGRSLSEQQVM 182

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTA--NEMERNILGKSLSIVQAIQHEIEMNINK 247
           AI +LV+++V NL    VTV+D  G+LL+   ++   ++  + L     ++      +  
Sbjct: 183 AIVNLVSSSVANLPRTSVTVVDQNGRLLSDTVDDPATDLADRQLEYRLRLEEIYRARVEN 242

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L   +G  N  + V  +++    +  E +  P   +       ++   ++         
Sbjct: 243 LLTPIVGPGNVSAQVSLDIDFTQTERTEDLVIPGRALLSEQVALEEDVIAQM---GGIPG 299

Query: 308 VEQNMPHVSD---------------------------------------------RKVPL 322
              N P                                                     L
Sbjct: 300 AVANTPPPRPELDGAPPADGAAPPADGAAPPADGAAPPADGAAPPADGAAPPADGNGQGL 359

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR-----LTEVLGRSAD 377
                         NYEI+    A +    ++  + +AV++ +       L         
Sbjct: 360 ASEESRVRSTNSLRNYEISRSITAQSSPMAQIVSVQVAVLLREQPSAVEGLDAEDSIPPQ 419

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ-LFNSGTVQVSFMDILSRHF 436
            G   +++ ++  +VS   GI+  RGDT+ ++S+ F+  + +F+S +    F+       
Sbjct: 420 VGFDPAWIDDVRGLVSRTVGIDESRGDTLIVSSLPFISTEAVFSSMSENTDFLWYEDPWV 479

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
              +  ++ ++   +VT   +  L         +   + G +  +   + + +    M  
Sbjct: 480 REAVRNVLMVMVLAVVTLGLIKPLLMQFLSAPGEGMMMPGNTGTAGGGVLTDMDVIEMEE 539

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR-LLHMIEINEERFAKILRKWARSEIE 555
                D   +     +      +++  S    +  +  ++     R + + + +   +++
Sbjct: 540 GQTLEDIKAKLKPKKTTISAEMLDTANSYDDKVALIRMIVSDEAGRVSNVFKAFMEDDMD 599


>gi|148269839|ref|YP_001244299.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1]
 gi|281412278|ref|YP_003346357.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10]
 gi|147735383|gb|ABQ46723.1| flagellar M-ring protein FliF [Thermotoga petrophila RKU-1]
 gi|281373381|gb|ADA66943.1| flagellar M-ring protein FliF [Thermotoga naphthophila RKU-10]
          Length = 532

 Score =  271 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 192/472 (40%), Gaps = 28/472 (5%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M I+++L   +K       S+ R R  ++  + +  ++  +      + PHY  L   L 
Sbjct: 1   MNIVERLRDLWKKIVELWNSMSRERKFLVGGIGIALVITIVLFAVVASVPHYRLLVAGLN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L E NI +++S  G  I VP S  V + R+ LA++G+   SS  G+ + +
Sbjct: 61  EDEAGVIIQKLEEMNIPYKVSP-GGDIYVPDSYNVYELRMKLASEGV-LGSSRKGFSILN 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPT 172
           + + FG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +      R +
Sbjct: 119 ENS-FGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229
             V++        +    I  LV+ AV  L   +V V+D+  + L+     +    +   
Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER--S 287
            L + Q ++   E  I KAL +  G           +N    +     Y+  ++ E    
Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            + ++  +    S        + N+P ++        +    ++    +NYE+N      
Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPLTYPSATSEGTS-TYERTHTITNYELNEVYQKI 356

Query: 348 THD-NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405
             +   ++  LS+AV++           S+       +   IN +V    G I S    +
Sbjct: 357 IQNREGEISSLSVAVII--------DASSSVLQNSSDWSGVINDLVEKGVGSITSSASLS 408

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           + +  + F    +  +   ++  ++   R     +   +    T ++ +L +
Sbjct: 409 VAVAFLPFDR-SIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVI 459


>gi|170288525|ref|YP_001738763.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2]
 gi|170176028|gb|ACB09080.1| flagellar M-ring protein FliF [Thermotoga sp. RQ2]
          Length = 532

 Score =  270 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 192/472 (40%), Gaps = 28/472 (5%)

Query: 1   MAILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M I+++L   +K      +S+ R R  ++  + +  ++  +      + PHY  L   L 
Sbjct: 1   MNIVERLRDLWKKIVDMWSSMPRERKFLVGGIGIALVITIVLFAVVTSVPHYRLLVAGLN 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L E NI +++S  G  I VP S  V + R+ LA++G+   SS  G+ +  
Sbjct: 61  EDEAGVIIQKLEEMNIPYKVSP-GGDIYVPDSYNVYELRMKLASEGV-LGSSRKGFSILS 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPT 172
           + + FG TSF +++    AL+ E+ R+I +I G+  ARVH+V+P    + +      R +
Sbjct: 119 ENS-FGATSFDKQVKYQIALQEELERSIMTIKGVKDARVHLVLPKYTYYVRGEMAEPRAS 177

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGK 229
             V++        +    I  LV+ AV  L   +V V+D+  + L+     +    +   
Sbjct: 178 VLVVLEPGAELTREQVRGIVELVSGAVEGLKPENVRVVDNYSRSLSDMLETDEGTFLASS 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER--S 287
            L + Q ++   E  I KAL +  G           +N    +     Y+  ++ E    
Sbjct: 238 KLELKQQLEKYYESKIKKALESVFGPGRVEVIPDISINWSKIETEMKKYEAPARREGLVR 297

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            + ++  +    S        + N+P  +        +    ++    +NYE+N      
Sbjct: 298 SQETQVEKSQNLSPTGGPAGTDSNIPPFTYPSATSEGTS-TYERTHTITNYELNEVYQKI 356

Query: 348 THD-NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG-INSRRGDT 405
             +   ++  LS+AV++           S+       + + IN +V    G I S    +
Sbjct: 357 IQNREGEISSLSVAVII--------DASSSVLQNNSDWSSVINDLVEKGVGSITSSASLS 408

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           + +  + F    +  +   ++  ++   R     +   +    T ++ +L +
Sbjct: 409 VAVAFLPFDR-SIERALQEELKQIETRRRFILYSVGIALLGFLTFILIYLVI 459


>gi|225871927|ref|YP_002753381.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC
           51196]
 gi|225792578|gb|ACO32668.1| flagellar M-ring protein FliF [Acidobacterium capsulatum ATCC
           51196]
          Length = 534

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 115/556 (20%), Positives = 223/556 (40%), Gaps = 39/556 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +      F      L   + +    +  + + L     ++     +  LY  L   D  
Sbjct: 14  QLRGAATGFTAWVRQLTPAQRMRWGGLAALGVALLAGLFWYGTRTDWRTLYAGLNPDDAR 73

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L+ A I F +S +G+++ VP+  + KAR+ + A G PSS    G+ LFDK N  G
Sbjct: 74  TMAGQLTTAGIPFEVSPDGTALEVPAPDLDKARLTVTAGGGPSSG-RMGFALFDKPNWVG 132

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI- 180
            + F +++   RALEGE+ +TI ++  + ++RV++VMP    F        ASV++R   
Sbjct: 133 -SDFDEQVNYQRALEGELEQTIDTLEDVRSSRVNLVMPHDSLFTSEQRAAKASVVLRLKH 191

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                + A+AIR+LVAAAV  L   +V ++ + G        ++       ++  A +  
Sbjct: 192 RTLSEEEAQAIRNLVAAAVDGLTPANVVLVSANG-------EDQFGAHGQNALELAQEQA 244

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L    G+ N  +AV  + +  T    + +Y+P+     S++ S  +  S+  
Sbjct: 245 LTQQVIGTLQPVAGLGNVHAAVHMDFDTATTSETDEIYNPNQTATLSMQRSTQSTGSQPV 304

Query: 301 QPESAVTVEQNMPHVSDRKVP---LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                     N P+ +    P    P++    + +EE S Y ++ K         KL RL
Sbjct: 305 -AAGVPGAASNAPNSNATGKPPLYPPQATGQQNSQEESSTYGVSKKIEHRAQGPGKLNRL 363

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           ++AVV+N+  + +   +   Q +  + +  + ++V AA G N  RGD +T+  M F    
Sbjct: 364 TVAVVLNEPWVMQGK-KKVWQPRSAAEMQRLTQLVQAAVGYNQARGDIVTVEQMPFDTGS 422

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
             ++       +    R  + ++     L+G LLV  +    + +  +            
Sbjct: 423 --DTPLSLQERVQSWMRMASPLLRPAALLLGILLVVLMVFRPMLKAASSSGKALPAGVSV 480

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
             +     +  +      +       +                         R+   +  
Sbjct: 481 KAVIGDTTAEGLAELPQADRQQLQAQA----------------------IYERVAERVNK 518

Query: 538 NEERFAKILRKWARSE 553
              + A++L+ W  SE
Sbjct: 519 EPAQSARLLQSWIHSE 534


>gi|332669190|ref|YP_004452198.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484]
 gi|332338228|gb|AEE44811.1| flagellar M-ring protein FliF [Cellulomonas fimi ATCC 484]
          Length = 535

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/547 (19%), Positives = 210/547 (38%), Gaps = 36/547 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +   +       +  +    + V ++   A   +++ P    L+  L  +D + +   L+
Sbjct: 11  RLTGAVRQFSIAQRTLGLIGVAVLLLGAFALSTYLSRPTMSPLFSGLSGADASAVVDELT 70

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A + ++++D GS++ VP + +   RI LAA GLP+++   GY L D++     + F Q+
Sbjct: 71  AAGVQYQLADGGSTVLVPDAQLYDQRIRLAAAGLPTNADGGGYSLLDEMP-MTSSEFQQQ 129

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYK 186
            T  RALEGE+ART+ +I G+ +A V + +P+   F    A PTASV IR          
Sbjct: 130 TTYQRALEGELARTVGAIDGVESASVKLALPEESVFVSEKADPTASVFIRTRPGTSLSLD 189

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
             +AI HLV+A +  +   DV V+D+TG++L+A                  +  +  ++ 
Sbjct: 190 QVQAIVHLVSAGIDGMTPTDVAVVDATGEVLSAVGTGTTGGVAGQQ-ASDYEARVAASVQ 248

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREI--VYDPDSKVERSIRLSKDAQRSETSQPES 304
             L   +G       V AE++              PD+    S   ++       S    
Sbjct: 249 ALLDPLVGPGRSAVTVTAEIDQSQTDRTVEEFTATPDTPPLASSTTTETYTGGAASGAAG 308

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
            +       ++            + +   E     +N  +  TT     ++R S+AVV++
Sbjct: 309 VLG----PDNIQVPNGDGTTGEGSYESTTEDVTNAVNKSTERTTQGPGAIQRQSVAVVLD 364

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ-LFNSGT 423
           +     +             LA++ + ++AA GI+  RGDTI + ++ F   Q       
Sbjct: 365 EKAAAPID------------LAQLRETIAAAAGIDPERGDTIAVQAVPFDTTQAEEAGAA 412

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           +  +     +    ++I         L +      A+ R          ++G    +   
Sbjct: 413 LAAAEEAEKAAQQTSLIRQAAIGGVVLALLLAIAIAMTRRSRKARRTAIDLGELQPV--- 469

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
                     + ++  AL+   +D                  +    +  + +   +  A
Sbjct: 470 ----------LTDEQRALEGLPEDALPELPPGPLPGEPDPVARKRAEITALADDQPQEVA 519

Query: 544 KILRKWA 550
            +LR W 
Sbjct: 520 DLLRGWL 526


>gi|320107022|ref|YP_004182612.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4]
 gi|319925543|gb|ADV82618.1| flagellar M-ring protein FliF [Terriglobus saanensis SP1PR4]
          Length = 559

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 119/567 (20%), Positives = 220/567 (38%), Gaps = 60/567 (10%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +      ++ + + + L +         +A  ++     +  L+  LE  D+ ++   L 
Sbjct: 25  ELRSRVAAMPQRQRMTLLASAFALAAFCVALVWWTGRTDWRPLFKGLEGRDLQQVEQQLG 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            A I ++ + +GS I V +  + KAR+ +AA+G+P  S   G+ELFDK N  G + F ++
Sbjct: 85  SAGIAYQPTPDGSGIEVAAEQMDKARMVVAAKGMP-GSGRMGFELFDKPNWVG-SEFDEK 142

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI-NPSVYKS 187
           +   RALEGE+  TI+++  + +ARVH+ +     F       TASV+++          
Sbjct: 143 VNYQRALEGELEHTIETLGAVRSARVHLTLSRQSLFAAEEHPATASVVLKMRNASLARDQ 202

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINK 247
           A +IR LVA AV NL    V ++D+ G                   VQ  +  +E  +  
Sbjct: 203 AASIRALVAGAVENLHPEQVALVDADGHF-------DLNGPTQRGEVQEQEQALERKLVA 255

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT 307
            L    G  N R+ V    + + ++  + VYDP      S++ S+    ++ ++  +   
Sbjct: 256 MLEPLAGTGNVRATVNLSFDSEAEERTDEVYDPQQSAPVSMQRSEQ-SSTQANRQGAVAG 314

Query: 308 VEQNMPHVSDRKVP----------------LPRSLENTDKKEEQSNYEINTKSIATTHDN 351
              NMP  +    P                      +   +EE S+Y +    + T    
Sbjct: 315 AAANMPGPAPAVPPLLATPEKKDANGLPVYPQAGGPSQAVREESSSYAVTRHLVHTQRGP 374

Query: 352 YKLERLSIAVVVNKGRLTEV---LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
            +++R+  AVVVN   +TE     G +  + +    +  + ++  AA G + +R D + I
Sbjct: 375 GRVQRIVAAVVVNDRAVTEKAGKDGATLWKQRTPEEMRRLEQLAQAAVGFDPKRADQVVI 434

Query: 409 TSMDFLENQLFNSG---TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
            ++ F EN           Q        R    +I  L  +V   LV F  L  L    +
Sbjct: 435 ENIAFSENAADARPNWFERQAEHGSNFLRMQPVLIRTLGVVVCGALVCFFVLRPLGEQVS 494

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
                       +I    P+                                +I+    +
Sbjct: 495 KALQPALPAPRTAIDLNIPVPPEGG---------------------------QISPSQVQ 527

Query: 526 QSDLRLLHMIEINEERFAKILRKWARS 552
            +   + + I  + ++ A++L  W  S
Sbjct: 528 STFEAVKNQIRSDPQQSARLLESWIGS 554


>gi|296283238|ref|ZP_06861236.1| flagellar MS-ring protein [Citromicrobium bathyomarinum JL354]
          Length = 514

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/511 (22%), Positives = 216/511 (42%), Gaps = 24/511 (4%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           +S     LY  L+ +    I+  L   N+ F +S +G+++  P + + + R+ +A + L 
Sbjct: 24  SSDKMGYLYTDLDPTAAQAITEKLRAQNVPFSLSGDGTAVMAPENRLPELRMSMAGEQL- 82

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                 GYE+ D   +FG++S  +++   RA+EGE+ R+I ++  IV ARVH+VMP+   
Sbjct: 83  --GGAIGYEVLDTQQAFGVSSSREKMNETRAIEGELGRSIATLQSIVNARVHLVMPERAL 140

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
           F     + +ASV ++        + EAIR+LVAAAVP L    ++++D TG LL      
Sbjct: 141 FAPEARKASASVTVKTRGKLSSGNVEAIRYLVAAAVPELSPESISIVDQTGALLARAGEA 200

Query: 224 RNILGKSLSIVQ-AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS 282
                      Q A +  I   I   +   +GV   R+ V AE++ D  +    V+DPD+
Sbjct: 201 GEAGASQADERQVATEARIRSQIEALIEPIVGVGKVRAEVSAEIDRDQTREESEVFDPDT 260

Query: 283 KVERSIRLSKDAQRS-ETSQPESAVTVEQNMPHVSDRKVPLPRSLEN-TDKKEEQSNYEI 340
           +V       +   ++ E +     VTV   +P   D       + E+  ++  E   ++ 
Sbjct: 261 QVIARQISVESGDQNRENAGATPGVTVGAQLPEGGDVMGGGGDTRESARNETSEDITFQN 320

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
           +++   TT    K+ RL++AV+V+ G           QG     +  + ++V  A G ++
Sbjct: 321 SSRRTLTTRTPGKVSRLTVAVMVDGGE----------QGLPAPQVQRLTRLVENAVGYDA 370

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
            RGD++ + SM F +                L + F      L  L+   +V    L  L
Sbjct: 371 ERGDSVIVESMPFAQPDEIADAEGDFWSDLPLGQLFD-----LGKLLVIAVVGLFVLRML 425

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           R  +    A       +  +             + ND     S  +          +++ 
Sbjct: 426 RPKNVPASAAGQLPSPEQNVIDLTPEGRGGEEQLENDGAPALSGPE---LDDEIALAQVE 482

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
             +   +  ++   +  +    A ++R+W  
Sbjct: 483 GKLKASALKKIGDAVAASPAESAAVVRQWLS 513


>gi|150019080|ref|YP_001311334.1| flagellar MS-ring protein [Clostridium beijerinckii NCIMB 8052]
 gi|149905545|gb|ABR36378.1| flagellar M-ring protein FliF [Clostridium beijerinckii NCIMB 8052]
          Length = 522

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/524 (18%), Positives = 203/524 (38%), Gaps = 52/524 (9%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
            F+ +S  Y  L+  L+ +D   +  +L+E  +D +I  N ++I VP   V K R+ LA 
Sbjct: 41  IFYSSSNKYQVLFSDLDAADAQTVVNSLNEKKVDTKIDSNTNTIWVPKDQVDKLRLELAP 100

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
                +S + GYEL D  +SFG+T    +I +VR  +GE+ +TI+S   +  ARVHI   
Sbjct: 101 ---TLTSGSKGYELMDSGSSFGMTDEEFKIKKVRMQQGELEKTIKSFPQVEEARVHITEA 157

Query: 160 DMGSFRKIGARPTASVMIRAINPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
               F K      A+V ++    +       ++I  LV+ A  N+   ++ V+D    LL
Sbjct: 158 KDSVFVKDKEPGKAAVYLKLKKGTTIGEDQVKSIVALVSGATENIPRENIDVIDDNMNLL 217

Query: 218 T-------ANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT 270
           T        N +    + K     +  +  ++  I   L   +G    ++ V   L+ D+
Sbjct: 218 TKDINSDKNNSVSSEAISKQQDAEKNYEDRMQKAIVSLLEPIVGKGKVKATVNVNLDFDS 277

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +Q  + V DP+      + +S++  +   +   +A +      ++S+       +   + 
Sbjct: 278 KQKTQTVVDPNK-----VIVSQENSKETNNSGSTATSQSPVDNNMSNTTTATNNNPSASS 332

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           K+++++NYE+            +++RL+ +V+V+                  +    +  
Sbjct: 333 KEDQKTNYEVGKSESKVISAPGEVKRLTASVMVDGN-------------LDAATQQTLEN 379

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
            V  A G+++ RGD +++  M F       + +   +     +      +  +  ++G L
Sbjct: 380 AVGNAIGLDALRGDKVSVVGMAFDTTAQDQAKSEIDAMNAEAATAGKNKMMIVAGVLGAL 439

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           L+  +     RR     +  +  +      +  P  S      +  ++            
Sbjct: 440 LLGMVIFFIARRRKKNKEENEELLNTLIDDTILPKESDEVFEPIEFESKT---------- 489

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                            +  +        E+  +I++ W     
Sbjct: 490 ------------QKSHLEEEIKRYATEKPEQVVEIIKSWLTENE 521


>gi|304316908|ref|YP_003852053.1| flagellar M-ring protein FliF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778410|gb|ADL68969.1| flagellar M-ring protein FliF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 505

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/561 (18%), Positives = 197/561 (35%), Gaps = 71/561 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I  Q+  F+       + + + +  + L+ I       + +N P+Y+ LY  L V D  
Sbjct: 7   NIRSQINNFWNKF---DKKQKIQIGIISLLLISSIALLVYIINRPNYEVLYSDLSVKDAG 63

Query: 62  RISVALS-EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +   L  E  I ++I  NGS+I VP+    +ARI LA +G+P    +    +    NS 
Sbjct: 64  AVVDKLKNELKIPYKIEGNGSTILVPAQYKDEARIQLATEGIPQDGFSFSDAM---NNSL 120

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF----RKIGARPTASVM 176
             T   ++   +  ++ EI  T+++I G+  A+V+IV+PD  +F        +     + 
Sbjct: 121 ATTDQERKQKYIYFVQNEIQNTLKAIDGVQDAKVNIVVPDENNFVLSNNDNSSTAAVMLQ 180

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-NILGKSLSIVQ 235
           ++       +    I + V+ +V  L    VT++D  GK+L A      +      ++  
Sbjct: 181 LKPGVTLTNQQINGITNFVSKSVEGLSPDKVTIIDGNGKVLVAQNDNSLDGASSQYALQM 240

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q++++ NI   L    G  N        LN D Q   ++ + P   ++ + RS +  K
Sbjct: 241 KVQNDLQNNIQSLLEQVFGPGNVIVRASVNLNFDKQVQDKVEWQPVIDNNGIIRSTQTIK 300

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +     ++          N P  S           N  K +   NYEIN      T    
Sbjct: 301 EIANGSSNGA--PAGTATNNPPGSTTYTTQNNGNSNYSKTDTTINYEINQIKTTLTSAQG 358

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K++ +S++VVVN                  +   ++  +VS A G  +    ++++  + 
Sbjct: 359 KIQNISLSVVVNNNN------------LSPTMKQQLTDLVSNAAGGKNV---SVSVMGIK 403

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  + L      Q      +       +     +   +           +  N +     
Sbjct: 404 FNTDLLNQMKNTQKQTFPYVWLIILGALLLAGGVFYAM-----------KKKNKELIPAT 452

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            +        P             D                                ++ 
Sbjct: 453 NLEEAMSTEEPGKEIEELDVTSEKDE----------------------------KMKQIE 484

Query: 533 HMIEINEERFAKILRKWARSE 553
             I+   +  A+++R W   E
Sbjct: 485 KFIKQKPDIVAQLIRTWLNEE 505


>gi|260772323|ref|ZP_05881239.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14]
 gi|260611462|gb|EEX36665.1| flagellar M-ring protein FliF [Vibrio metschnikovii CIP 69.14]
          Length = 500

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 198/517 (38%), Gaps = 30/517 (5%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
              L    E  ++  +   L +   ++R+  +G++I VPS      R+++   GL   + 
Sbjct: 1   MRPL-GAFETEELIPVLDYLDQQKQNYRL--DGNTILVPSKDFNSIRLNMVRSGL-HQTR 56

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           ++G ++  +   FG++  +++     + E ++A+ I+ +  +  ARV + +P    F + 
Sbjct: 57  HAGDDILLQDMGFGVSQRLEQERLKLSRERQLAKAIEEMRQVNRARVLLALPQQSVFVRH 116

Query: 168 GARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
               +ASV +        K    ++I  +VA+AVP +    VTV D  G+LL++   +  
Sbjct: 117 NQEASASVSLTLRTGMNLKQEEVDSIVDMVASAVPGMRPTRVTVTDQHGRLLSSGSQDPI 176

Query: 226 ILGKS--LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK 283
              +     + +  +  +   I+  L   LG+ N+ + V  EL+    +    V+DP++ 
Sbjct: 177 ATARRKEQELERRQEENLRNKIDSVLIPILGLGNYTAQVDIELDFSAIEQTRKVFDPNTP 236

Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRS-------LENTDKKEEQS 336
             RS    +D      +          N P                      +  +E   
Sbjct: 237 ATRSEYTLEDYNNG--NVVAGIPGALSNQPPADASIPQDIAQMKDGSILGRGSVHREATR 294

Query: 337 NYEINTKSIATTHDNYKLERLSIAV-VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           N+E++T           + R ++AV + N+  +    G+   Q   +S +  I  ++   
Sbjct: 295 NFELDTTISHERRQTGVINRQTVAVAIKNRAVVNPETGQVTYQALSESEINAIRTLLIGT 354

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G N  RGD + + SM F E +      + +      +     + +ALV +V  L+   L
Sbjct: 355 VGFNENRGDLLKVLSMQFAEPETDPLIDIPIWENPHFNDWVRWLASALVIIVIVLV---L 411

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
              A+++L N       ++ G   L           G         +  +          
Sbjct: 412 VRPAMKKLLNPVVDDDDQLYGPDGLPIGADGETSLIGSDIEGGDLFEFGSGIDLP----- 466

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
               N +  +     +  ++    E  A++++ W ++
Sbjct: 467 ----NLHKDEDVLKAVRALVANEPELAAQVVKNWMQN 499


>gi|323341386|ref|ZP_08081630.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC
           25644]
 gi|323091263|gb|EFZ33891.1| putative flagellar M-ring protein fliF [Lactobacillus ruminis ATCC
           25644]
          Length = 537

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 204/562 (36%), Gaps = 42/562 (7%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + D L       + L R   + +   ++    +     +      Y  L+  L  +D
Sbjct: 1   MDKVKDALEALKAKWSELSRLVKIAIVLGVISLFAIIGTVYYMNTRVEYSVLFSNLSEAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118
              IS  L   NI ++++D+G +I V  + V + RI LA    LPSSS   G+ELFD  +
Sbjct: 61  AGTISQDLDSQNIKYKLADDGKTIMVDKTKVDQYRIDLAVDNKLPSSS--KGFELFDSAS 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS--FRKIGARPTASVM 176
               T   ++I   RAL GE+  +I ++  +  A+V++ +P   +        +  AS++
Sbjct: 119 MM-TTDEDRKIMYQRALTGELENSIAALDDVDKAKVNLTIPKSDNVFDNSTSKKAKASIV 177

Query: 177 IRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-----ERNILGKS 230
           +          + + I  L   AV  LD  +V V+D TGK+L  NE        +   K 
Sbjct: 178 LTLKGTSISKDAVQGIVALTTGAVQGLDKKNVKVVDQTGKILNKNEEDDASDSSSATSKY 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
           + +    + ++E  I   +   +G    +++V  +LN D  + +   Y        +++ 
Sbjct: 238 MKLKSQYEKQMEKKITGLIEPVVGKGKVKASVNVDLNFDAVEKKITNYSNPQIRSENVQA 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           S      + +Q         N+            +  +        N E+NT++    + 
Sbjct: 298 SGKQAEIKQAQTGQVNDNVDNV---------TGDANNDNASYNRTVNNELNTETTKVINA 348

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
              + R++ +VV+N                       I K++  A G + +RGDT+++ +
Sbjct: 349 PGSINRMTSSVVING-------------DLSAGDARNIRKLIQGALGYDKQRGDTVSVQA 395

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           ++F   +     TV    +                ++    + FL +   RRL   ++  
Sbjct: 396 VNFARAKSTKKKTVAKKPVKKT-NWVLIGALIAAGVLTLGTIIFLVIRRRRRLAEEEEEY 454

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             +     +                 D   L    +         +  +++        R
Sbjct: 455 YDDDYDVDVTDEGEEEEEAEEAAEELDPEILAEQERQRKETETKRKIAVSTE------QR 508

Query: 531 LLHMIEINEERFAKILRKWARS 552
                  + +  A ++  W + 
Sbjct: 509 AKEYATKHPDVVADLISAWVKE 530


>gi|213622939|ref|ZP_03375722.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 344

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 8/330 (2%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINK 247
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++  I+  I  
Sbjct: 192 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEA 251

Query: 248 ALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PES 304
            L+  +G  N  + V A+L+   ++  E  Y P+    ++   S+    SE      P  
Sbjct: 252 ILSPIVGNGNVHAQVTAQLDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGG 311

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
                 N P   +            + +  
Sbjct: 312 VPGALSNQPAPPNEAPIATPPTNQQNAQNT 341


>gi|11095419|gb|AAG29859.1|AF313764_2 flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 619

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 111/614 (18%), Positives = 223/614 (36%), Gaps = 81/614 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             ++++ +  K        +  +    ++    +     F +++P   +LY      D  
Sbjct: 32  DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRA 91

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+ AL    I + I      I+V      KAR  LA QGLP S+ +  + +       G
Sbjct: 92  SIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVHVI--SSLPLG 149

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            +  ++      A E  +ARTI++I  +  ARVHI  P    F +     TASVM++   
Sbjct: 150 ASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238
                    +AI++LVAA+VP +    V+V+D  G LL+A    + +I  + L + Q ++
Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                 +NK L   LG +N+ + V  +L+    Q     Y  +  +          +   
Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327

Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320
             Q         NMP                                             
Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387

Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           +  +    +     YE+  +     +    ++R+S+A+ + +  
Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
             +              +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S
Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           ++ +L+R+ +        LV  L++       L+      + ++        L    I +
Sbjct: 500 WVPLLARNLS------ALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQTNIDN 553

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
            +  G  P +     +   D+   +   ++R++          + H ++ +  R A ++ 
Sbjct: 554 LIAEGEEPAEEAGSQAITLDMIDAAPGYKARVDL---------VRHFVKQDPARAALVVH 604

Query: 548 KWARSEIEDRYTQH 561
              RS+++     +
Sbjct: 605 DMMRSDLKSLENHN 618


>gi|168698710|ref|ZP_02730987.1| Flagellar FliF M-ring protein [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 204/558 (36%), Gaps = 44/558 (7%)

Query: 1   MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVS 58
           M + ++LL Q       L   R + +    L  ++   A  +      Y  L    L   
Sbjct: 1   MDVFNRLLEQARAYWAGLSAGRRIGVVLSFLGVLLALGAVVYLSPGGRYTPLGAGPLPPE 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           DV+ +   LS   I FR+S  G+ I VP     +A + LA  G+P+     G+E+FD+ +
Sbjct: 61  DVSAMRTRLSGDGIPFRLSSGGTGIEVPDERYAEAVVSLAGAGIPARGGK-GFEVFDETS 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
               T F+Q +   RAL+ E+AR+I  +  + +ARV I  P+   F +    PTASV+I+
Sbjct: 120 -LMTTPFVQSVNYQRALQAELARSIMQMESVQSARVMIAKPEPSPFVRDQKNPTASVVIK 178

Query: 179 AINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIV 234
                     +A AI  LVA ++  L   +VTV+++ G+LL+         +    L  +
Sbjct: 179 LKPRMTMNPATAGAIVSLVAHSIEGLRPENVTVMETGGRLLSDPNAAARSGLPTPQLEYI 238

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           + ++  +     + L+  LG       V A++N    + R   Y PD +V  + R +   
Sbjct: 239 ERLETYLSTKAEEMLSKTLGPGRAVIRVSADVNFQKIKERVKTYSPDGRVGVAERTA--N 296

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             S  ++         N+                + ++  Q+++ ++         +  +
Sbjct: 297 STSTGTRAGGVTGATANITRTGGSTANAGSGGGTSKEEVIQTDFLVSETLRDIEEGSGAV 356

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
            RLS+A +V+   LT   G++         +      +  A G    R D++TI      
Sbjct: 357 TRLSVAALVD---LTAADGQAVISQADAEEI------IRQAVGFRPGR-DSVTIARAPLT 406

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                      +  +  +  + +   N  V     L    +GL  LRR            
Sbjct: 407 GPNA-GEPDDTLVRLQRIQTYVSLARNLSVAFAAVLSFLVIGLLLLRRR----------- 454

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                  P P +   T      +      +     +     + R N+       +R   M
Sbjct: 455 -------PVPEAQGATGTEPGAETAGAGPTGPVAPTPPPTTEERRNAE-----LIRFQTM 502

Query: 535 IEINEERFAKILRKWARS 552
                     +L      
Sbjct: 503 ARNEPATVVHVLSVMLGE 520


>gi|307293804|ref|ZP_07573648.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1]
 gi|306879955|gb|EFN11172.1| flagellar M-ring protein FliF [Sphingobium chlorophenolicum L-1]
          Length = 587

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 114/575 (19%), Positives = 228/575 (39%), Gaps = 55/575 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D L   F            +    +L  +    AA   +  P   +L+  L  +D + ++
Sbjct: 35  DALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAVA 94

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L ++ I +   ++G   +V      KA++ LAAQGLP S +  G  + D +   G + 
Sbjct: 95  QVLDQSGIRYDFDNSGGM-TVGEDDYFKAKMMLAAQGLPKS-APDGNSMIDSLP-MGASR 151

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++      A E ++ARTI++I  + +A+VH+ +     F +  ++P+ASVM+R      
Sbjct: 152 AVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGRS 211

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              +   AI HLVA+++P L+  D++V+D  G+LL+ N+       + L++   ++    
Sbjct: 212 LTDQQVSAIVHLVASSIPELNPEDISVVDQNGRLLSNNDGNA-ADDRQLAVQTKMEDRYR 270

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSET 299
            ++   L   LG   F + V AELN   +Q     Y  D    R+   S  +    +   
Sbjct: 271 QSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRTETGSWQSDPRGQGAG 330

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--------------------KKEEQSN-- 337
            +         N   V+        + +                       K EE  N  
Sbjct: 331 GEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTQSAQTAAQPGTPGNPLMKTEETFNRS 390

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           +E+  +   T      ++RLS+AV ++ G   +         +    +A +  +V  A G
Sbjct: 391 FELGREVSVTKDAIGTVKRLSVAVALDNGADGK--------PRTAQEIAALEALVKGAVG 442

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            +  RGD + ++S  F + ++  +   +  ++  L R+ + ++ AL+ + G         
Sbjct: 443 FDQARGDVVALSSRSFAKEEVVEAPWYEAEWVSPLVRNVSALLVALLLIFGI-------- 494

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
              R L     A +     ++ +    I   ++T +     +  D S             
Sbjct: 495 --GRPLLKRRAAAQAAAAEQTAVVGQKIGREISTEITRQATVNPDGSTPVTLDMIS---- 548

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             ++Y   Q    + + ++ + +R A ++R   + 
Sbjct: 549 --STYDYAQRADLIRNFVKQDPDRAALVVRDLLKE 581


>gi|237751136|ref|ZP_04581616.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879]
 gi|229373581|gb|EEO23972.1| flagellar M-ring protein [Helicobacter bilis ATCC 43879]
          Length = 563

 Score =  266 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 104/575 (18%), Positives = 218/575 (37%), Gaps = 30/575 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFV-------NSPHYDNLYV 53
           M       Q       L R + +++   ++V +                 +   +  L+ 
Sbjct: 1   MDFKAIFTQLQNLIKKLNRKQQIVILVTVVVFVAFLSYLIVSSLGSKKGDSVDGFGILFS 60

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113
               +D       L + NI +++ ++ ++I+VP   V   R  LAAQG+        Y++
Sbjct: 61  AENPADAGSAISYLKQQNIPYKMIND-NTIAVPQDQVFVLRNELAAQGIIK--GRVDYDI 117

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
           F++ + FG T    ++ ++RA++G++ +T+ +++ I  ARV I  P    F K  A P+A
Sbjct: 118 FNENS-FGATQSEFDVKKLRAIKGQLEKTLMALAPIQDARVEIAEPKDDVFVKTRAVPSA 176

Query: 174 SVMIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM---ERNILG 228
           SV +   +           I++L+A +   L   +V ++D  G  L   +    E     
Sbjct: 177 SVALTLRDGMTLTQNQIFGIQNLIANSFNGLKPENVIMVDQYGNPLNKRDEATIENEQAF 236

Query: 229 KSLSIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
           K+ +     + EI   I ++L+    G D    +V  + +   Q+  E +Y  +S V   
Sbjct: 237 KNFAYKVQAEQEIANKIRQSLSRLAGGTDRMTVSVNLDYDFGKQESTEEIYSKESAVASE 296

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
                + +      P     V  N+  V D       + E   + +   NY  + K+   
Sbjct: 297 SGKEIERKGLAPKDPGGVPGVINNIAEVKDLDS---NNREEYRESQFVKNYMPDKKTTTM 353

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYLAEINKIVSAATGINSRR 402
                +L+R+++ VV++     E              +    LAEI KIV A++G +  R
Sbjct: 354 RLQTPQLKRMTVGVVIDGTYTEETNEETGFITMKYTPRSPEELAEIKKIVEASSGYDESR 413

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            D +++ +          SGT  ++  + +++     +   + L+  +LV  +     ++
Sbjct: 414 NDIVSVIAGQLNA---IGSGTPPLTNFEKVAQAVEKYLGPFMPLLRYVLVVIVLFFFYKK 470

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           +      +  EV  +      P+          N    +    ++            ++ 
Sbjct: 471 VIAPFAERMLEVHEEEETEKQPLFDFDDDDDTLNRANEMRKRVEEQLGIGGGFNE--DAV 528

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR 557
                  ++   +    +  A + +   R EIE +
Sbjct: 529 KYDVLLEKIKEAVRTKPDEIAGLFQALIRDEIEMK 563


>gi|160902819|ref|YP_001568400.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95]
 gi|160360463|gb|ABX32077.1| flagellar M-ring protein FliF [Petrotoga mobilis SJ95]
          Length = 516

 Score =  266 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/555 (16%), Positives = 203/555 (36%), Gaps = 55/555 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q      +L   +      +++  + L +     ++  +Y+     L+ ++   I   
Sbjct: 5   MQQIRDWWKNLEDRKKRNYIVLLITVVALIVFFSILLSRKNYEFFIGGLDQANAGNIVTK 64

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L E  I++++ D G+ I V +  V + R+ LA++G     +  GYEL  +   FG TS+ 
Sbjct: 65  LEEMGIEYKVDDFGN-IYVANQNVSELRMKLASEG-SLGYNLQGYELL-QNQGFGATSYD 121

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASVMIRAINPS 183
           +++    ALEGE++R+I S+  + +ARVH+V+P    ++   +     +  +++      
Sbjct: 122 KQVNYQIALEGELSRSIASMDSVQSARVHLVIPPRTYYQVGESPKPSASVLLVLNPGASV 181

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHE 240
                + I +LVA AV  L   ++ V+D+    L+A      +         +   I+  
Sbjct: 182 TSSQIKGIINLVAGAVAGLQPENIKVVDNFSNDLSAQIALGEDIGSADTKFKLKAEIERY 241

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSKDAQRSE 298
            +  +   L +  G+ N       ELN    +  + + +P  D       + +K  Q S 
Sbjct: 242 YKEKVESGLQSVFGLGNVVVVPEIELNWQKIEEEQRMVEPVVDENGIILSQQTKTEQSSS 301

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK-SIATTHDNYKLERL 357
           +        V+ N+P  + +      +       +  +NY++N   +      N ++   
Sbjct: 302 SPNSGGVPGVDSNIPPYTYQTPTSTGN--YYSSSDVITNYDVNEIYTRTIEDKNGEISNK 359

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           SI + ++                     ++I   V+ A G      D I++  + F  + 
Sbjct: 360 SITIFIDFQNSKVGD--------SQELRSQIKTAVATAIGTPE---DNISLVDIQFNRDL 408

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL-HALRRLHNIDDAKKGEVGG 476
                 ++        R    VI  +V     +LV  +     +R+   + + +K E+  
Sbjct: 409 EAMRADIEYQLQLRRQRITNIVIAIIVIAFVMMLVILIARARRVRKASQLVEERKRELES 468

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
           +   +       V       +                                 +  + E
Sbjct: 469 RVEEAMKERGVEVEEVSPEQERF-----------------------------REIATLAE 499

Query: 537 INEERFAKILRKWAR 551
            N +  A I++ W +
Sbjct: 500 NNPDEVADIIKSWLK 514


>gi|15615021|ref|NP_243324.1| flagellar MS-ring protein [Bacillus halodurans C-125]
 gi|10175078|dbj|BAB06177.1| flagellar basal-body M-ring protein [Bacillus halodurans C-125]
          Length = 525

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/563 (18%), Positives = 206/563 (36%), Gaps = 66/563 (11%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  +   +  + + +++   +L+ I+L     FF    HY  LY  L + +   I   L 
Sbjct: 11  RVTEYWRNRTKKQQMVIVGAVLLIIILLAFLTFFSTRTHYVPLYSNLTLQETGNIKETLD 70

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
              I   I+++G++I VP + V   ++ LAA+GLP S     Y  F     FG+T     
Sbjct: 71  ARGISSEIANDGTTILVPETQVDALKVELAAEGLPQSG-TINYSTFRDSMGFGMTDNEFS 129

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN--PSVY 185
           +    A+E E+A  I+S+ G+  A V I +P+   +        TASV++          
Sbjct: 130 LMERAAIESELADLIRSVDGVNQANVMITLPEQTLWVSDSQQEATASVVVDLAPGFQLDA 189

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQHE 240
               A+ HLV+ +VPNL + ++ +++   +    ++            +  +I + I+ +
Sbjct: 190 SQVRALYHLVSRSVPNLPIENIVIMNQMFEDYLYDDHHSTGSTLSVYEQQRAIQRDIERD 249

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSKDAQRSE 298
           +  N+ + L   +G D    +V  +++   +  +E   +P  +  +E      ++   + 
Sbjct: 250 LTRNLQQMLGTLVGRDKVLVSVTTDIDFTQENRQEERVEPVDEENMEGIAVSVENITETY 309

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
           + +      +E     + +          + +  E++ NYE+N          YK+  L 
Sbjct: 310 SGEGTPEGGIEGVGDDIPNFPGVYGTGEVDYELTEDRINYEVNRIRSDIVESPYKIRDLG 369

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS--------AATGINSRRGDTITITS 410
           I V+     +    G         + + +I   V         AA   +    + I ++S
Sbjct: 370 IQVM-----VEPPEGMEELPADRLADIQQILGTVVRTSISGVYAAELTDDEFNEKIFVSS 424

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
             F       +G                V   +V  +    + FL +  +RR  + D+  
Sbjct: 425 QPFEGKADLETGAGSS----------VPVWVYVVGGILLATIIFLIVLLVRRRGDSDEDL 474

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             + G  +   P        TG                                 Q   +
Sbjct: 475 MDDDGALTEEIPDLPQEEEGTG--------------------------------AQKRKQ 502

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           +  M +   E F+K+LR W   +
Sbjct: 503 IERMAKERPEEFSKLLRTWLSED 525


>gi|18642464|emb|CAD22875.1| basal-body M-ring protein [Erwinia chrysanthemi]
          Length = 357

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 5/323 (1%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F +    L     + L       I + +A   +   P Y  LY  L   D   I   L
Sbjct: 13  KSFGEILNRLRANPKIPLLIASAATIAIVVALSLWARGPDYRVLYTNLNERDGGSIVSEL 72

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            + NI +R +++G++I +PS  V + R+ LA QGLP   +  G+EL D+   FG++ F +
Sbjct: 73  GKMNIPYRFTESGAAIMIPSDKVYETRLKLAQQGLPKGGA-VGFELLDQE-KFGISQFSE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVY 185
           +I   RALEGE+ART++++  I  ARVH+ +P    F +    P+A+V +          
Sbjct: 131 QINYQRALEGELARTMETLGPIQNARVHLAIPKPSLFVREQKSPSAAVTVTLQPGRALDD 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQHEIEMN 244
               AI +LV+++V  L    VTV+D TGKLLT N+     +    L     ++   +  
Sbjct: 191 SQISAITYLVSSSVAGLPADKVTVVDQTGKLLTQNDSSGRDLNAAQLKYANEVESNYQRR 250

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           I   L   +G  N  + V A+++  +++  +  Y P+    ++   S+   +S+     +
Sbjct: 251 IEAILTPVVGAGNVHAQVTAQIDFASREQTDEQYQPNQTPNQAAVRSQQNSQSDQRGGPN 310

Query: 305 AVTVEQNMPHVSDRKVPLPRSLE 327
              V   + +        P S  
Sbjct: 311 VGGVPGALSNTPTPAPTAPISTP 333


>gi|294013069|ref|YP_003546529.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S]
 gi|292676399|dbj|BAI97917.1| flagellar M-ring protein FliF [Sphingobium japonicum UT26S]
          Length = 583

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 113/575 (19%), Positives = 226/575 (39%), Gaps = 55/575 (9%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           D L   F            +    +L  +    AA   +  P   +L+  L  +D + ++
Sbjct: 31  DALKARFTGFMKQPAVAKSLPLLGLLGVVATAGAAWLALREPPQRDLFRALPDADKSAVA 90

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L +  I +   ++G   +V      KA++ LAAQGLP S +  G  + D +   G + 
Sbjct: 91  QVLDQNGIRYDFDNSGGM-TVGEDEYFKAKMMLAAQGLPKS-APDGNSMIDSLP-MGASR 147

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
            ++      A E ++ARTI++I  + +A+VH+ +     F +  ++P+ASVM+R      
Sbjct: 148 AVEGEKLRSAREMDLARTIEAIDSVESAKVHLAVEPPSVFLRERSKPSASVMLRLASGRS 207

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
              +   AI HLVA+++P L+  D++++D  G+LL+ N+       + L++   ++    
Sbjct: 208 LTDQQVSAIVHLVASSIPELNPEDISLVDQNGRLLSNNDGNA-ADDRQLAVQTRMEDRYR 266

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ---RSET 299
            ++   L   LG   F + V AELN   +Q     Y  D    RS + +  +    +   
Sbjct: 267 QSVIALLTPILGAGKFSTEVHAELNFAERQATRETYPQDEARLRSEQGTWASDPRGQGAG 326

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTD--------------------KKEEQSN-- 337
            +         N   V+        + +                       K EE  N  
Sbjct: 327 GEASGIPGALSNQAPVNPTVTQTNPNGQAVAQGTESAQTAAQPGTPGNPLMKTEETFNRS 386

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           +E+  +   T      ++RLS+AV ++ G   +         +    +A +  +V  A G
Sbjct: 387 FELGREVSVTKDAVGTVKRLSVAVALDNGPDGK--------PRSAQEIAALEALVKGAVG 438

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            +  RGD + ++S  F + ++  +   +  ++  L R+ + ++ AL+ + G         
Sbjct: 439 FDQARGDVVALSSRSFAKEEVVEAPWYEAQWVSPLVRNVSALLVALLLIFGI-------- 490

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
              R L     A +     +  +    I   ++T +        D S             
Sbjct: 491 --GRPLLKRRAAAQAAAAEQIAVQGQKIGREISTEIGRQATANPDGSTPITLDMIS---- 544

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             ++Y   Q    + + ++ + +R A ++R   + 
Sbjct: 545 --STYDYAQRADLIRNFVKQDPDRAALVVRDLLKE 577


>gi|302872571|ref|YP_003841207.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575430|gb|ADL43221.1| flagellar M-ring protein FliF [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 560

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/569 (18%), Positives = 218/569 (38%), Gaps = 29/569 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           + D L    +   +  +++ ++      + ++  +AA +    PHY  ++  L+  +   
Sbjct: 5   LNDFLKNIREKWANFSKSQKIMFIISSSIILLSVIAAIYITTRPHYVTIFSGLDPKEAAE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   LSE  ID + ++ G++I V  + V +A++  A  G P +SS +  +     +S   
Sbjct: 65  IQNILSEQKIDSKAANGGTTILVRDTDVDRAKMAAAQAGYPKNSSITFEDALKLSSSMTA 124

Query: 123 TSFMQEITRVRALEGEIARTIQSI-SGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
           T   +  T ++  E EI   ++ +   I  A V++ +P+  +F  +    +PTASV +  
Sbjct: 125 TESDKRRTFIKLKESEIQEALKQMSDYIEDAVVNLSIPEDYTFALKDEATKPTASVKLTL 184

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAI 237
                    E I+  VAA+V  L   +V ++D+ G  L+ N  +    +  K L I  A 
Sbjct: 185 KKSLGSDQIEGIQRFVAASVEGLLPENVVIIDNKGNYLSDNSSDTTEGLSSKQLQIKVAT 244

Query: 238 QHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKD 293
           ++EIE  + + L  ++   ++ + +V  ++N D Q+I E  Y P   DS +  S + +K+
Sbjct: 245 KNEIEKKVKELLGNYVNSPEDVKVSVNLDMNFDMQKISETKYSPVLEDSGIVVSKKTTKE 304

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKV-PLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +S  S        + N    + +             K +E  NY+ N K I T     
Sbjct: 305 EAQSTNSSSSGVPGTDTNPTQNTTQYPITSQGGQSTYTKSDETVNYQNNEKKIETIKAPG 364

Query: 353 KLERLSIA---VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINSRRGDTI 406
            +     +   V+      T+     +DQ K  ++     +                  +
Sbjct: 365 TINYDKSSIAVVLYRYITYTQEDFEKSDQAKNMTWAQFKLQNQNNKRPFLTDQKEIETIV 424

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            +         +   G    +F+D   R     ++ +   +  LL+    +  L +  + 
Sbjct: 425 NLIKSATGIQNVTVEGYEVPTFVDRPQRQIP--VDYIYVALAFLLLMVFAISLLIK-ASR 481

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             ++  E+ G   +            L   +        +            +  +   Q
Sbjct: 482 GKSRTVELAGVGPVEISEEKPVAEGILQEAEKRKEAEVEEI----------NVEEFGVNQ 531

Query: 527 SDLRLLHMIEINEERFAKILRKWARSEIE 555
            + ++  ++    E  A++LR W   + E
Sbjct: 532 YEKQIDKLLREKPEIVAQLLRNWLNEDWE 560


>gi|157364749|ref|YP_001471516.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO]
 gi|157315353|gb|ABV34452.1| flagellar M-ring protein FliF [Thermotoga lettingae TMO]
          Length = 536

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/569 (18%), Positives = 213/569 (37%), Gaps = 53/569 (9%)

Query: 1   MAILDQLLQ----FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M  L ++ +    F++    L R   ++ + + +  I++ +    FV +P Y  L   L 
Sbjct: 1   MEFLKKIQEYLKGFYEKWKGLPRGNKILFSGIAVSIIIVGILTIIFVAAPRYTLLVSGLT 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQGLPSSSSNSGYELFD 115
                 +   L    +++++      + V     V + R+ LA+ G+   ++  G+E+ D
Sbjct: 61  DEQSGYLIQQLETMGVEYKVEP--GRVLVSDKYNVYELRMRLASMGV-LGATTKGFEILD 117

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG---ARPT 172
           +  SFG TSF +++    AL+GE+ R+I +ISG+ +ARVH+ +P    + +      + +
Sbjct: 118 Q-QSFGATSFDKQVRYQVALQGELERSIMTISGVRSARVHLTLPKYTYYVRGEMAEPKAS 176

Query: 173 ASVMIRAINPSVYKSAEAI-RHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILG 228
             V+++          + I   LVA AV  + + +V V+D   ++L+       +  +  
Sbjct: 177 VLVVLQPGQDLSQNQIKGIMVELVAGAVEGMKLENVKVIDQMSRVLSDKVTASQDMLLAS 236

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
               +  +++   +  I + L +  G          +LN +  + +   Y+P ++    +
Sbjct: 237 NRAELKMSLESYYQKKIKQTLESVFGPSRVEVIPDIKLNWERVERQLTKYEPATRQGGIV 296

Query: 289 RLSKDAQRSETSQP--ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           R  +       + P    AV  + N+P           S    ++    +NYE+NT    
Sbjct: 297 RSQEQESEKSANLPATGGAVGTDSNIPPTYPTTTSQGTST--YERSHTITNYELNTVVEN 354

Query: 347 TTHDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--GINSRRG 403
              +   +++ LS++V+++          S  Q   ++       IVS     GI +   
Sbjct: 355 VVQNKEGEIDTLSLSVIIDASS-------SVFQNFDEAERERWANIVSDLVEKGIGANSS 407

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D     S+ FL          Q S  +I  +   T++   V L+  L      L  ++  
Sbjct: 408 DPNLAVSVAFLPFDRTFEEEYQKSLSEIERKRRFTMMVTGVSLLFALGFMLFYLMIIQFR 467

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                    E   K       +        +  +  AL    ++                
Sbjct: 468 RIRSRRLIEERKLKMEEELKKVFEEEEEVPLTPEQQALLELKEN---------------- 511

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARS 552
                  L  +   + E  A I++ W   
Sbjct: 512 -------LEKIYRESPEEVANIIKLWLVE 533


>gi|322382303|ref|ZP_08056210.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153656|gb|EFX46031.1| flagellar MS-ring protein-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 527

 Score =  263 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 218/568 (38%), Gaps = 58/568 (10%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +++ Q++    +      +   + L +  +  I+      + ++   Y   +  L+ +
Sbjct: 1   MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L +  I +++S +G SI VP++ V + +I + ++GL     N GY +FD+  
Sbjct: 61  AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNK-GGNVGYGIFDQSG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMI 177
           SFG T    E+ ++ A++GE+ + I S   I  ++V I +P+ G F      + +ASV++
Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179

Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKS 230
             +          + I +LV+ +V NL + ++T+ D  G+ +       +      +   
Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSKVE 285
             + +  + +++ NI   LA   G +     VV+ +N D ++ +E +      D    +E
Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
            S++  + +  S+ +          N   V   +         +++ ++  NYE+N  + 
Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTN--DVPGYESTSNSGNSKSEENQKTVNYEVNRITN 357

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
                 Y ++ L+I V ++   +    G+  +   +++ +  I K   A +G+   + D 
Sbjct: 358 DIIRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD- 416

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
                   ++ ++        S     + +    +      +  L +    + ALRR   
Sbjct: 417 --------IDKKVTIIPKELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKK 468

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               ++ E            +  +                              N     
Sbjct: 469 NLLEEEEEYITTGQQQMEYPTIDIE-----------------------------NVTNDN 499

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
           Q   +L  + +   E F  +LR W   E
Sbjct: 500 QVRKQLETLAKKKPEEFVNLLRTWLVDE 527


>gi|82523970|emb|CAI78781.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [uncultured epsilon proteobacterium]
          Length = 572

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 202/491 (41%), Gaps = 21/491 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS----PHYDNLYVKLE 56
           M       Q     T L + + +I+A+ I+  +   +    + +       ++ L+  L 
Sbjct: 1   MDFKVLFSQLVVLYTKLTKQQRIIIAAAIIGIVGFLIFMVVYTSKNTKESKFEVLFDSLS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            +D  ++   L +  I++ I DN + I VP  +V K RI +AA G+P  S   G+ELFD 
Sbjct: 61  SADAAKVVEQLEKDGIEYEIEDN-NVIRVPRDVVYKQRISIAALGIPKDSG-VGFELFD- 117

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG TSF Q I  +RALEGE++RTI +++ I +A V + +P    F +    PTASVM
Sbjct: 118 TQEFGATSFDQNIKYLRALEGELSRTINALAPIESASVSLALPKETLFVEKSVSPTASVM 177

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSL 231
           I          K    I++LVA+AV  L   +V +++S G+ L   +    +        
Sbjct: 178 ITLVEGRNLSSKQVRGIKNLVASAVTKLTPANVMLVNSDGETLGDEDEMAQMGELSSVQQ 237

Query: 232 SIVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRL 290
              +  + + +  I + L+ F+ G     + V  E +   +      +DP++ V      
Sbjct: 238 KYKEKEEKKRQKKIIQVLSPFVGGTKKVVAQVTIEFDFSIKNSTSETFDPENVVRSEQNS 297

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
            +  +    ++         N+  V   K    ++ E  +K    +NYE+      T   
Sbjct: 298 EEKREGGAPAEVGGVPGTVSNIGPVQGLK--SNQTSEKYEKSTGTTNYEVGKTVSTTKSQ 355

Query: 351 NYKLERLSIAVVVNKGRLTE------VLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
             ++ R++ AV+V+     +                 ++ +  I+ +  ++ GI+  RGD
Sbjct: 356 FARINRITAAVIVDGKYKNKLNADGVPTEELEYLPLDETDIQAISSLAGSSIGIDEARGD 415

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            +++ ++ F  +++          +     + A       ++   +L+  L    +    
Sbjct: 416 QLSVKNLQFKRDKVSVGEDGVSQALVFSETYLAPFSGLFKYIFVLILLLILYKKVISPFA 475

Query: 465 NIDDAKKGEVG 475
                   E  
Sbjct: 476 QRMLEISKEEE 486


>gi|226225737|ref|YP_002759843.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27]
 gi|226088928|dbj|BAH37373.1| flagellar M-ring protein [Gemmatimonas aurantiaca T-27]
          Length = 540

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 119/571 (20%), Positives = 218/571 (38%), Gaps = 56/571 (9%)

Query: 7   LLQFFKSGTS-LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           +    +S T  LG  R  ++ +V +V   L      +   P    LY  + V  V  ++ 
Sbjct: 1   MNSLLESLTGRLGGARQAMIIAVGVVVTALVFGVSRWATKPTMVPLYADVPVEQVKAMTD 60

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L+EA I + +   GS+I V S+ + +AR+ LAA  +P+S    G ELFDK  ++G+T F
Sbjct: 61  KLTEAGITYELDRTGSTIMVQSADLARARVDLAAGTVPNSGRP-GLELFDK-PTWGMTDF 118

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            Q++   RALEGE+ RTI  +  + + +VH+ + D   F++      ASV +   N    
Sbjct: 119 TQKVNYRRALEGELERTISKMKDVKSVKVHLAIEDDQLFKQNERPSKASVTLAMNNSIAP 178

Query: 186 --KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQAIQHEI 241
             ++   I  LVA++V  L+   VT++D  G+ LT  +         + LS+ +  +  +
Sbjct: 179 RAEAVRGIASLVASSVGGLEPEHVTIVDERGEALTMEDDGSMAGLTSRQLSVQREAESYL 238

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ 301
           E   +K L++ +G  N R  V A +N D  +      DPD +   + + ++    +    
Sbjct: 239 EQKADKLLSSLVGSGNARVQVSASMNFDKVERTVQAVDPDRQAIATEQKAEVTPSNPQQG 298

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
              + T                              YE        T     +++L++AV
Sbjct: 299 AGYSTTATS---------------------------YENTRSVENFTGAVGNIKKLTVAV 331

Query: 362 VVNKG------------------RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
           +V                                + +    L  I  +V  A G++S RG
Sbjct: 332 LVADRVVLPPAAPVPADSAAAAAAAALPPVAPTIETRTPDELTRIEALVRNALGVDSTRG 391

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D I++ S  F       +          L     +    +V +   +++  L L  +  +
Sbjct: 392 DMISVVSAPFDMPAPVVAVKETNPVPTDLLGRIQSNPKPVVAIAALVVL--LILALVTVV 449

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 ++ E       +P       +T +       LD    D  +     + +I    
Sbjct: 450 LLRPKKQQIEAPAVLPAAPAYAELPASTQMQQAMQEMLDEEPMDQMALIEEQRRQIVLPP 509

Query: 524 SKQSDLRLLHM--IEINEERFAKILRKWARS 552
              +  R   M  ++   +   +++R W R 
Sbjct: 510 PPTTPEREQAMATVDQRPDAALRVVRNWLRQ 540


>gi|220917658|ref|YP_002492962.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955512|gb|ACL65896.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 533

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 123/553 (22%), Positives = 219/553 (39%), Gaps = 39/553 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L QL +  +   +L     L+L +  LV I +   +    +   Y   +  L   D   
Sbjct: 4   LLKQLRELPRLLGALPAGLKLVLVAGALVAIGVAALSAVRSSE-AYQYAFTNLTPEDSAE 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
            + AL  A + +R+   GS+++VP+S V  AR+ LA  GLP      G+E+FD+ +  G+
Sbjct: 63  AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDRGD-LGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           + F Q++   RA EGE+ARTI  ++ + +ARVH+ +P+ G +R       A+V++     
Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                     IRHLV++AV  L    V+V+D  G++L+        LG+++   + ++ +
Sbjct: 181 RTLDQREISGIRHLVSSAVAGLAPAGVSVVDGRGEVLSDEGP----LGEAMGYQRRMERD 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +E  I   L   +G     + V A L+    Q    V DPDS   RS R       S+ +
Sbjct: 237 LERRIVDLLGQAVGPGAVVARVTASLDQTEVQSSAQVLDPDSATLRSERKLTQQSSSDGA 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P        N P          R   +   +++  NY+++T +  +     +LER+S+A
Sbjct: 297 GPAGVAGAAANQPLAPPAPAAGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERISVA 356

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+          +A   + D+ +A + ++   A G ++ RGDT  I+S  F+  +   
Sbjct: 357 VLVDG---------AAGAPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
                                        LL              +          +   
Sbjct: 408 PPPAPP---------------------PALLERPAVRWGALGAGALVGLALLAAALRRRR 446

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
           +P                I    +       +   +    +  S     R   +   +  
Sbjct: 447 APAAPEVLPIRPGARVAEIEAALARDAALPGAPPPRPAALADPSATLRDRARDLASQDPT 506

Query: 541 RFAKILRKWARSE 553
           R A +L+ W   E
Sbjct: 507 RTAHLLKAWIAQE 519


>gi|89098644|ref|ZP_01171526.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911]
 gi|89086606|gb|EAR65725.1| flagellar M-ring protein [Bacillus sp. NRRL B-14911]
          Length = 528

 Score =  261 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/574 (17%), Positives = 209/574 (36%), Gaps = 69/574 (12%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + ++L +FF    +   S  + +  ++A  +++ +++  AA           LY  L  S
Sbjct: 1   MKEKLQKFFNPLKEFWQSRTKKQKGLMAGSLILLLLIASAAVLLAGRTTMVPLYSNLSPS 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +   I  +L    I   I+D GS+I VP  +V   ++ LAA+G+P S S   Y  F +  
Sbjct: 61  ETGAIKESLDGRGIASEIADGGSTIMVPEEVVDTLKVELAAEGIPKSGS-IDYSFFSQNA 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI- 177
             G+T     + ++ A++ E++  I+ I G+  A+V I +P+ G F        ++ ++ 
Sbjct: 120 GIGMTENEFNVLKLDAMQTELSNLIKGIEGVNDAKVMINLPEKGIFINDQTEEASASIVL 179

Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK---LLTANEMERNILGKSLS 232
             +       +  +++ HL++ +VPNL   ++ V +   +   L  +N+     +   L 
Sbjct: 180 NTKPGYQFETEQIKSLYHLISKSVPNLPTDNIVVTNQFFEYFDLENSNDTSGKTITAQLD 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERS 287
           + + I+ +++  +   L+  +G +    +V A+++   +   E +  P        +  S
Sbjct: 240 VKKQIERDVQRQVQSMLSTLMGPEKVVVSVSADIDFTQENREENLVTPVDEENMEGIAIS 299

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            +   +       +         N   +++       S  + ++ EE  N E+N      
Sbjct: 300 AKKITETFTGSAEEAGGIAGTGDN--EITNYPGAAEGSNGDYERIEETINNEVNKIRKEI 357

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG--------IN 399
               YK+  L I V+V      +    S  Q ++D     ++ IV              +
Sbjct: 358 VESPYKVRDLGIQVMVEPPTADDP--TSLPQERVDDITQILSTIVRTTIDKKAAGADLTD 415

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
               D + ++   F     F   +  V    +            +  V   ++  L    
Sbjct: 416 EDIADKVVVSVQQFQGKTEFPEESAAVIPWWV----------YAIGGVLVAIILLLVFLF 465

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           +R      + +         ++   ++    T                            
Sbjct: 466 IRARRKSQEEQAELEEQVEPVTIKDVNEEQET---------------------------- 497

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
               S     +L  M +   E FAK+LR W   +
Sbjct: 498 ---ESSLRRKQLEKMAKEKPEDFAKLLRSWIAED 528


>gi|255022056|ref|ZP_05294062.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
 gi|254968542|gb|EET26098.1| Flagellar M-ring protein fliF [Acidithiobacillus caldus ATCC 51756]
          Length = 599

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 113/599 (18%), Positives = 225/599 (37%), Gaps = 73/599 (12%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
             F     S  + + L +   I + +   +     V+   Y  +Y  L       +  AL
Sbjct: 12  SDFRNWWHSRNQRQRLTILGGIALVLAASLGIGEAVSHTSYAVVYSGLSPQTGGSVIAAL 71

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I FR+ DNG+ I VP +   + R+ LA QGLP+ ++++ +    +    G +SF++
Sbjct: 72  QKGGIPFRLLDNGNVIEVPKADAARVRLQLAEQGLPAQATSALWHQL-QNEKLGTSSFVE 130

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVY 185
             T +RALE  +++ I+SI G+ AA V++ +P+   F +    P A+V ++         
Sbjct: 131 HTTYIRALEAGLSKDIESIQGVEAATVNLAIPNRTPFLERMPSPKAAVTLKLAPGMMLTQ 190

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
           +    I HLVA++VP L  G VTV+D  G+ LTA           L + Q ++      I
Sbjct: 191 EQVYGITHLVASSVPGLKAGSVTVVDQYGRALTAKPTGSQSSAI-LRLQQRVESAYRKQI 249

Query: 246 NKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
              LA  + G  N R AV A +++   Q   +       V  +   S   + S +S    
Sbjct: 250 VDLLAPIVGGKRNLRVAVDANIDLSHTQKSFVT-YGMGHVVTAAVESSRTKGSASSSTFG 308

Query: 305 AVTVEQNMPHVSDRKVPLPRSL---------------ENTDKKEEQSNYEINTKSIATTH 349
                 N P  + +      +                  + +  ++ +Y ++     T  
Sbjct: 309 IPGALSNQPPGNPQAPITAPATSAAPGLTLQEIRAMIPRSSQANQRFHYVLDKTVGFTKG 368

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSAD------------------------------QG 379
           + ++L  LS++V++N   ++     SA                                 
Sbjct: 369 EPWRLTSLSVSVLINGKSISPTSAVSAKPVSASTVSGVSAATTSAVRPASKRRTLAGIPE 428

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
                L ++ ++V+     ++ +G T+ ++ + +            + +   +S      
Sbjct: 429 YGPKTLLQLKRMVTNTIHASAPQG-TVVLSVLPYERPA----PIPHLPWWRRISPW---- 479

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
                  V    + +  L  +  L     A +     K+I S  P S A ++G    D  
Sbjct: 480 -------VVWSRLEWFLLGLIALLLFRKLAVEFMKQRKTIFSQQPSSDASSSGEDAPDKG 532

Query: 500 ALDSSNQDIFSHSRN------LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             +       S S          + ++    +++   +  +I  +  R  +++R+W  +
Sbjct: 533 RSNVPPVQNVSPSIPLDHATLDLNGVSQASLEENLNTIKELIRSDTVRAVEVIREWIGN 591


>gi|261216584|ref|ZP_05930865.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1]
 gi|261319454|ref|ZP_05958651.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1]
 gi|260921673|gb|EEX88241.1| flagellar M-ring protein FliF [Brucella ceti M13/05/1]
 gi|261292144|gb|EEX95640.1| flagellar M-ring protein FliF [Brucella ceti M644/93/1]
          Length = 332

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 147/332 (44%), Positives = 213/332 (64%), Gaps = 2/332 (0%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVNR+ +A
Sbjct: 2   IEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVNRMGLA 61

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S GLTSFM
Sbjct: 62  LGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLGLTSFM 120

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
           QEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA      +
Sbjct: 121 QEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAE 180

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHEIEMNI 245
           SA++IR LV AAVP+LD   VTVLD+ G LL +     N     + S+ Q +   ++ +I
Sbjct: 181 SAQSIRQLVTAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASHVDDSI 240

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  ++ ++A
Sbjct: 241 RKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNNRNDNA 300

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
             VEQN+P    +      S E TD++EE +N
Sbjct: 301 TGVEQNIPQEQIQNRNGESSTEKTDRREELTN 332


>gi|86157820|ref|YP_464605.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774331|gb|ABC81168.1| flagellar M-ring protein FliF [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 533

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 125/553 (22%), Positives = 221/553 (39%), Gaps = 39/553 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L QL +  +   +L     L+L +  L  I +        ++  Y   +  L   D   
Sbjct: 4   LLKQLRELPRLLGALPGGLKLVLVAGALAAIGVAALTAVR-SAEAYQYAFTNLTPEDSAE 62

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
            + AL  A + +R+   GS+++VP+S V  AR+ LA  GLP      G+E+FD+ +  G+
Sbjct: 63  AAGALGAAGVPYRLEAGGSALAVPASRVYDARLLLAGAGLPRGGG-VGFEIFDRGD-LGV 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP 182
           + F Q++   RA EGE+ARTI  ++ + +ARVH+ +P+ G +R       A+V++     
Sbjct: 121 SEFTQKVNLRRATEGELARTISRLAQVRSARVHLTLPEKGLYRDQDRPAAAAVVVNLQPG 180

Query: 183 SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
                     IRHLV++AVP L    V+V+D  G++++    +   LG+++   + ++ +
Sbjct: 181 RTLGQREISGIRHLVSSAVPGLAPAGVSVVDGRGEVIS----DEGALGEAIGYQRRMERD 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +E  I   L   +G     + V A L+    Q    V DPDS   RS R       S+ +
Sbjct: 237 LERRIVDLLGQAVGAGAVVARVTASLDQTEIQSSAQVLDPDSATLRSERKLTQQSSSDGA 296

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P        N P       P  R   +   +++  NY+++T +  +     +LERLS+A
Sbjct: 297 GPAGVAGAAANQPLAPPAPAPGARGRSSASTEDQTRNYDVSTTTTTSVARVPRLERLSVA 356

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           V+V+          +  Q + D+ +A + ++   A G ++ RGDT  I+S  F+  +   
Sbjct: 357 VLVDG---------AGGQPRADAEIARLGELAKRAVGFDADRGDTFEISSSPFVRAEEPA 407

Query: 421 SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSIL 480
           +                        L    +              +           +  
Sbjct: 408 APPAPPP----------------TLLERPAVRWGALGAGALVGLALLALALRRRRPPAAP 451

Query: 481 SPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEE 540
              PI        +        +        S  L        S     R   +   +  
Sbjct: 452 EVLPIRPGARVAEIEAALARDAALPGAPAPRSAALADP-----SATLRDRARDLATQDPT 506

Query: 541 RFAKILRKWARSE 553
           R A +L+ W   E
Sbjct: 507 RTAHLLKAWIAQE 519


>gi|220913732|ref|YP_002489041.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6]
 gi|219860610|gb|ACL40952.1| flagellar M-ring protein FliF [Arthrobacter chlorophenolicus A6]
          Length = 532

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 111/558 (19%), Positives = 205/558 (36%), Gaps = 40/558 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I     +           +  +    + V ++  +A   ++  P Y  L+  L+ +D N
Sbjct: 4   QITAFFTRMGSGIKGFSAAQRTLAIIGVAVLVLGTVALTSWLAKPAYTPLFSGLKDTDAN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + N+ + I++ GS+I VP   V   R+  AA     S++ +GY L DK+    
Sbjct: 64  GIVEQLRKDNVPYEIANGGSTILVPEEKVYDERLK-AAAAGLPSAAATGYSLLDKL-GVT 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RA 179
            + F Q +T  RALEGE+A TIQ++ G+ AA V + +P+   F       TASV +  + 
Sbjct: 122 SSEFQQSVTYKRALEGELATTIQAMEGVKAAAVRLAIPEKSVFVDKTPDATASVFVETQP 181

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                    +A+ HL +AA+ NL   +V+V+DS G +L+                   Q 
Sbjct: 182 GTTLSPDKVQAVVHLTSAAIENLKPANVSVVDSQGNVLSTVGGGAAGSSS--KQAGEYQE 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
               ++   L + +G  N   AV A++  ++ Q R   +   + V      +K    + T
Sbjct: 240 RTTDSVKAVLDSVVGPGNATVAVAADVTGESAQQRSETFTAAADVPALSESTKSETYTGT 299

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
               + V    N+                 D  +   N  +N  +         ++R +I
Sbjct: 300 GGGAAGVLGPDNIA-----VPGGTNGNSTFDSTDSTKNNAVNKVTEDRIIPQGAVKRQTI 354

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE---- 415
           +V +N+     V             LA +  +V++A G +  RGD +T+  + F      
Sbjct: 355 SVAINQAAAAGVN------------LASVRSLVTSAAGADPARGDVVTVEVLPFSTAAAD 402

Query: 416 -NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                 +     +          T++ A   L+  L +  + L + RR    +    G  
Sbjct: 403 NAAASLAEAKAEAEAAQQGELMKTLVIAGSILLAALALIVVALISWRRRQRREPVDLGIG 462

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
               +     +  A  T  +             +           +    ++   ++  M
Sbjct: 463 IEYPVAPVTALEPAPATSAIQ------------LPLAEPLPLPGADVLDGERRRAQIEAM 510

Query: 535 IEINEERFAKILRKWARS 552
           +  +  R A  LR     
Sbjct: 511 VAESPARTADYLRGLMDE 528


>gi|257871289|ref|ZP_05650942.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2]
 gi|257805453|gb|EEV34275.1| flagellar M-ring protein fliF [Enterococcus gallinarum EG2]
          Length = 540

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +   Q           + +I+   ++  + +  A  +      Y  L+  L  +D
Sbjct: 1   MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118
              IS  L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N
Sbjct: 61  AGTISKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
               T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++ 
Sbjct: 119 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLT 177

Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
                   +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I
Sbjct: 178 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 237

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
             + +  +E  + K L    G D F+ ++  +LN D+ + +++ YD       +++ +  
Sbjct: 238 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 297

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               + +Q  +      N+              E  +        E++T++  T      
Sbjct: 298 QGTVQEAQTGTVDDNVSNV---------TGTDGEGNNSYSRSVENELDTETTTTITAPGM 348

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +ER++ ++V+N                  +  AE+ +++++A G ++ RGD I I   DF
Sbjct: 349 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 395

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + ++  +   Q +     ++ +         ++   LV  + +  +RR    D+ +   
Sbjct: 396 AQAEVDPAADPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDV 455

Query: 474 VGGKSILSPPPISSAVTTGLMPND----NIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                  + P   S   +  +  +     +   S+     +   + Q     +  + +  
Sbjct: 456 TEEMVTFAQPSAVSTGASPTVAQEVVFGGVGNRSAETKPAAPEASTQETAAEHSGEPTLD 515

Query: 530 R-LLHMIEINEERFAKILRKWARS 552
           +   +  E N E  A++++ W + 
Sbjct: 516 QTARNYAESNPEVAAELIKAWMKE 539


>gi|321315387|ref|YP_004207674.1| flagellar MS-ring protein [Bacillus subtilis BSn5]
 gi|320021661|gb|ADV96647.1| flagellar MS-ring protein [Bacillus subtilis BSn5]
          Length = 531

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 95/575 (16%), Positives = 208/575 (36%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L   + +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177
           GLT    ++ +V+A + E++  I  + GI +++V I +P    F        ++ +   I
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKSSKVMINLPKDAVFVGEEQSAASASIVLQI 176

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
           +            + HLV+ +VPNL   ++ ++D        ++ +     +       I
Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P        +  S 
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +               + +         N +K   + NYE+N       
Sbjct: 297 EKVSETYQGDGAANGGTAGT-GEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 355

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398
              YK+  L I V+V      +    ++   +    + +I   V                
Sbjct: 356 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDETQNQNLS 412

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           ++   + I ++   F      ++ T + S + + +     V+ A + ++  +L+      
Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                              +P + I L   N++           
Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---------- 497

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            N         +L  M +   E FAK+LR W   +
Sbjct: 498 -NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 531


>gi|311068142|ref|YP_003973065.1| flagellar MS-ring protein [Bacillus atrophaeus 1942]
 gi|310868659|gb|ADP32134.1| flagellar MS-ring protein [Bacillus atrophaeus 1942]
          Length = 530

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/573 (16%), Positives = 197/573 (34%), Gaps = 63/573 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+ +     +T+ +++ S     I+L      F +S     LY  L   + 
Sbjct: 1   MQLKNKTSEFWNNR---SKTQKVLMISSFAAIIILITVISIFSSSEKMVPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +SD G+ I VP   V   ++ LAA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPSELSDGGTVIKVPEEQVDTLKVQLAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I  + GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 117 GLTDNEFDMLKVEATQTELSNLINEMKGIKNSKVMINLPKDAVFVGEEQSTASASIVLQM 176

Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
                        + HLV+ +VPNL   ++ ++D        +  +     +       I
Sbjct: 177 NPGYTLDQSQVNGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSNGDAGSYADSYSSQQGI 236

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288
              ++ +I+ ++   L   +G D    +V  +++   +   E + +P        +  S 
Sbjct: 237 KTQVEKDIQKHVQTLLGTMMGQDKVVVSVTTDIDFTKENRTEDLVEPVDKENMEGIAVSA 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +                 +      +  N DK   + NYE+N       
Sbjct: 297 EKVAETYQGDNAANGGTAGTGDEDTTGYAQTDENSENG-NYDKSSNKINYEVNRIHKEIA 355

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT--------GINS 400
              YK+  L I V+V           S    + D     +  +V  +           + 
Sbjct: 356 ESPYKVRDLGIQVMVEPPDAKNTASLST--ERQDDIQKILATVVRTSIDKDSQDQELTDE 413

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
              + I ++   F      ++ + + S +          I   V L   +++  + +   
Sbjct: 414 EINNKIVLSVQPFDGKVSLDTASEKSSVLP-----IWVYIAGGVLLAAIIVLIIMLVRKK 468

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           R                                  ++             +  ++    +
Sbjct: 469 R-------------------------------SNEDEYEEWTYETPQEPINLPDINEEES 497

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    +L  M +   E FAK+LR W   +
Sbjct: 498 ETEETVRRKQLEKMAKDKPEDFAKLLRSWLTED 530


>gi|167567191|ref|ZP_02360107.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 441

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 171/432 (39%), Gaps = 21/432 (4%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
               +  +Y  ++   E   + +++  L    I +RI  +   + VP + + +AR+ LAA
Sbjct: 17  YLRYDEANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAA 76

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ +     G E  D+ +  G + F+Q++   R LE E+A+++ ++  +  ARVH+ + 
Sbjct: 77  RGV-TGQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIA 135

Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                       +  +  + ++       +   AI +LVA +VPNL    V+V+D TG  
Sbjct: 136 KSSSFVMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAF 195

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           L+A     +  G         + E   ++   LA  LG+DNFR +V A +N D  +    
Sbjct: 196 LSARVDLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAGVNNDRVEEMRE 255

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +    +  +    +   +++             N P  +    P         +     
Sbjct: 256 QF---GEAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADGGVQ--RHATTR 310

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            Y  +       H   +LE+LS+AVV+N          +  +      LA I +I+    
Sbjct: 311 QYAYDRNVTQIKHSRGRLEKLSVAVVLNNAVSP-----AKGKPWSAEQLAHIEQILRNGL 365

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+++RGD + ++S+DF                          +    + +G LL+  L 
Sbjct: 366 GIDAQRGDQLVVSSLDFPAPN----APEPWWRERETLEQGGWYV---AYAIGALLLYLLV 418

Query: 457 LHALRRLHNIDD 468
              L R      
Sbjct: 419 ARPLLRTLQQWA 430


>gi|257875991|ref|ZP_05655644.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20]
 gi|257810157|gb|EEV38977.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC20]
          Length = 540

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 116/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +   Q           + +I+   ++  + +  A  +      Y  L+  L  +D
Sbjct: 1   MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118
              IS  L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N
Sbjct: 61  AGTISKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
               T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++ 
Sbjct: 119 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLT 177

Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
                   +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I
Sbjct: 178 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 237

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
             + +  +E  + K L    G D F+ ++  +LN D+ + +++ YD       +++ +  
Sbjct: 238 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 297

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               + +Q  +      N+              E  +        E++T++  T      
Sbjct: 298 QGTVQEAQTGTVDDNVSNV---------TGTDGEGNNSYSRSVENELDTETTTTITAPGM 348

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +ER++ ++V+N                  +  AE+ +++++A G ++ RGD I I   DF
Sbjct: 349 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 395

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + ++  +   Q +     ++ +         ++   LV  + +  +RR    D+ +   
Sbjct: 396 AQAEVDPAVDPQGNEPIAAAKGYLKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDV 455

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL---- 529
                  + P   S  T+  +  + +     N+   +     ++      ++ S      
Sbjct: 456 TEEMVTFTQPSAVSTGTSPTVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLD 515

Query: 530 -RLLHMIEINEERFAKILRKWARS 552
               +  E N E  A++++ W + 
Sbjct: 516 QTARNYAESNPEVAAELIKAWMKE 539


>gi|221309496|ref|ZP_03591343.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313821|ref|ZP_03595626.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318745|ref|ZP_03600039.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323016|ref|ZP_03604310.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           SMY]
          Length = 531

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/575 (16%), Positives = 207/575 (36%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L   + +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F        ++ +   I
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
           +            + HLV+ +VPNL   ++ ++D        ++ +     +       I
Sbjct: 177 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P        +  S 
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +               + +         N +K   + NYE+N       
Sbjct: 297 EKVSETYQGDGAANGGTAGT-GEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 355

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398
              YK+  L I V+V      +    ++   +    + +I   V                
Sbjct: 356 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDETQNQNLS 412

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           ++   + I ++   F      ++ T + S + + +     V+ A + ++  +L+      
Sbjct: 413 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 466

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                              +P + I L   N++           
Sbjct: 467 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---------- 497

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            N         +L  M +   E FAK+LR W   +
Sbjct: 498 -NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 531


>gi|16078684|ref|NP_389503.1| flagellar MS-ring protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|120324|sp|P23447|FLIF_BACSU RecName: Full=Flagellar M-ring protein
 gi|2633993|emb|CAB13494.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 536

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/575 (16%), Positives = 207/575 (36%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L   + +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 6   MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 63  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F        ++ +   I
Sbjct: 122 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 181

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
           +            + HLV+ +VPNL   ++ ++D        ++ +     +       I
Sbjct: 182 QPGYTLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 241

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P        +  S 
Sbjct: 242 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 301

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +               + +         N +K   + NYE+N       
Sbjct: 302 EKVSETYQGDGAANGGTAGT-GEEDVTNYKADGENTESGNYEKNSNKINYEVNRIHKEIA 360

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398
              YK+  L I V+V      +    ++   +    + +I   V                
Sbjct: 361 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDETQNQNLS 417

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           ++   + I ++   F      ++ T + S + + +     V+ A + ++  +L+      
Sbjct: 418 DADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI------ 471

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                              +P + I L   N++           
Sbjct: 472 -------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---------- 502

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            N         +L  M +   E FAK+LR W   +
Sbjct: 503 -NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 536


>gi|257866378|ref|ZP_05646031.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30]
 gi|257873106|ref|ZP_05652759.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10]
 gi|257800336|gb|EEV29364.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC30]
 gi|257807270|gb|EEV36092.1| flagellar M-ring protein fliF [Enterococcus casseliflavus EC10]
          Length = 540

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 116/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +   Q           + +I+   ++  + +  A  +      Y  L+  L  +D
Sbjct: 1   MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118
              IS  L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N
Sbjct: 61  AGTISKDLEEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
               T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++ 
Sbjct: 119 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLT 177

Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
                   +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I
Sbjct: 178 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 237

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
             + +  +E  + K L    G D F+ ++  +LN D+ + +++ YD       +++ +  
Sbjct: 238 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 297

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               + +Q  +      N+              E  +        E++T++  T      
Sbjct: 298 QGTVQEAQTGTVDDNVSNV---------TGTDGEENNSYSRSVENELDTETTTTITAPGM 348

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +ER++ ++V+N                  +  AE+ +++++A G ++ RGD I I   DF
Sbjct: 349 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 395

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + ++  +   Q +     ++ +         ++   LV  + +  +RR    D+ +   
Sbjct: 396 AQAEVDPAVDPQGNEPIAAAKGYLKYAIIGGIVLALFLVILMIVGVIRRRRKEDELEVDV 455

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL---- 529
                  + P   S  T+  +  + +     N+   +     ++      ++ S      
Sbjct: 456 TEEMVTFAQPSAVSTGTSPSVAQEVVFGGVGNRSAETKPAVPEASTQEAAAEHSGEPTLD 515

Query: 530 -RLLHMIEINEERFAKILRKWARS 552
               +  E N E  A++++ W + 
Sbjct: 516 QTARNYAESNPEVAAELIKAWMKE 539


>gi|167574616|ref|ZP_02367490.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786]
          Length = 448

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 171/432 (39%), Gaps = 21/432 (4%)

Query: 40  RFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAA 99
               +  +Y  ++   E   + +++  L    I +RI  +   + VP + + +AR+ LAA
Sbjct: 17  YLRYDEANYKPVFGAREPVQLGQLASVLDGERIPYRIHPDTGQVLVPRADLARARMILAA 76

Query: 100 QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP 159
           +G+ +     G E  D+ +  G + F+Q++   R LE E+A+++ ++  +  ARVH+ + 
Sbjct: 77  RGV-TGQPAPGLEQIDRDDPLGTSQFVQDVRFRRGLESELAQSVMTMEAVEKARVHLSIA 135

Query: 160 DMG---SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
                       +  +  + ++       +   AI +LVA +VPNL    V+V+D TG  
Sbjct: 136 KSSSFVMMDGEKSSASVMLTLKPGRRLGKEQIAAILNLVAGSVPNLAPSRVSVVDQTGAF 195

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
           L+A     +  G         + E   ++   LA  LG+DNFR +V A +N D  +    
Sbjct: 196 LSARVDLDDDFGDGNDAAARFRDETIRSVQDLLAPTLGIDNFRVSVTAAVNNDRVEEMRE 255

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            +    +  +    +   +++             N P  +    P         +     
Sbjct: 256 QF---GEAPKVTNEATRDEQNRDRIALGVPGSLSNRPVDAPASAPQADDGVQ--RHATTR 310

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            Y  +       H   +LE+LS+AVV+N          +  +      LA I +I+    
Sbjct: 311 QYAYDRNVTQIKHSRGRLEKLSVAVVLNNAVSP-----AKGKPWSAEQLAHIEQILRNGL 365

Query: 397 GINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
           GI+++RGD + ++S+DF                          +    + +G LL+  L 
Sbjct: 366 GIDAQRGDQLVVSSLDFPAPN----APEPWWRERETLEQGGWYV---AYAIGALLLYLLV 418

Query: 457 LHALRRLHNIDD 468
              L R      
Sbjct: 419 ARPLLRTLQQWA 430


>gi|265985824|ref|ZP_06098559.1| flagellar M-ring protein FliF [Brucella sp. 83/13]
 gi|264664416|gb|EEZ34677.1| flagellar M-ring protein FliF [Brucella sp. 83/13]
          Length = 324

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 140/316 (44%), Positives = 201/316 (63%), Gaps = 2/316 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGCPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            + +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  CMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVAGH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESCVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVS 316
           + ++A  VEQN+P   
Sbjct: 308 RNDNATGVEQNIPQEQ 323


>gi|114800445|ref|YP_758973.1| flagellar MS-ring protein [Hyphomonas neptunium ATCC 15444]
 gi|114740619|gb|ABI78744.1| flagellar M-ring protein FliF [Hyphomonas neptunium ATCC 15444]
          Length = 528

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 129/555 (23%), Positives = 222/555 (40%), Gaps = 40/555 (7%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +F  +  +L  +R L+LA+ +   I                 LY  LE +    I   L 
Sbjct: 2   KFLDTLKALPVSRQLMLAAAVAGMIAAMSFLVQGATRDPMTLLYSGLEPAHAGDIIKELE 61

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           ++   + I   G +I VP       R  LA QGLP  S   GYEL D+VN F +TS M  
Sbjct: 62  QSGTPYEIK--GEAIFVPQGKRDAIRFTLAQQGLPRPSVQ-GYELLDEVNGFSVTSEMYN 118

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA 188
               RA EGE+ RTI +I G+ +ARVHI       F +     TASV +          A
Sbjct: 119 AAYWRAKEGELTRTILAIPGVSSARVHIGANLRSGFSRSQPNQTASVTLTTARDMTAGQA 178

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           EAI+++VA AV  L   DV V+D    +L   +  R       +  QA    +E  I   
Sbjct: 179 EAIQYMVALAVAGLRAEDVAVIDPVKGILAGPKANRTEEPAVAAATQA--SLLEQKILSL 236

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   +GV N R +   +++   Q    + +DP+S+V R+   + +     ++     +TV
Sbjct: 237 LEPRVGVGNARVSATVDVSRQRQVTSAVTFDPNSRVIRN--RTTNDSTGASAGAGGGMTV 294

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
             N+P   +       + +N+    E  +YEIN           +++R++IAV++N+  L
Sbjct: 295 ASNLPQGGEGGGGNTSTNKNST---ETVSYEINETRTEVETLPGEVQRITIAVLLNEQAL 351

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                 +          A+  +++++A GI++ RGDTI+I  M F    + +   V    
Sbjct: 352 GIDPAAADVATLTQQMAADFEQLIASAAGIDTARGDTISIELMPFQAVPVDDLIEVPGMV 411

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
             ++ R+F + + AL+  +  +++    +  +                            
Sbjct: 412 EQLMERYFWSGLQALLLGLVVIVLGVGVVRPML--------------------------- 444

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                   D ++ +       +          + V       L       +E  A +L++
Sbjct: 445 ---VQKSKDALSPEDLGAGAGAEGAGRAVASGADVESDPFAYLKDYATDRQEETAALLQQ 501

Query: 549 WARSEIEDRYTQHIS 563
           W   + +   T  I+
Sbjct: 502 WLTEDQQSGQTDQIA 516


>gi|269796398|ref|YP_003315853.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Sanguibacter keddieii DSM 10542]
 gi|269098583|gb|ACZ23019.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Sanguibacter keddieii DSM 10542]
          Length = 530

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 106/553 (19%), Positives = 220/553 (39%), Gaps = 32/553 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I   L +   S       +  +    + V ++  +A   + + P +  LY  L  +D +
Sbjct: 4   QITSALGRVTSSIREFTVAQRTLALIGLAVAVVGVVALSMWFSRPQFSPLYTDLAPADAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+   + +++++ GS++ VP+  V   R+ +AA G+ S S++ GY L D      
Sbjct: 64  AIVDQLTAQGVKYQLTNGGSTVLVPTESVYDMRLKVAASGM-SPSADGGYSLLD-DMGMT 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            + F Q++T  RALEGE+ +T+ S+ G+  A V + MP    F      PTASV ++  +
Sbjct: 122 SSEFQQDVTYKRALEGEMGKTVSSMQGVELATVKLAMPAESVFVDQATDPTASVFVKTRS 181

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQH 239
                    ++I +LV+A+V  +   DV V+DS+G +L+A        G +       + 
Sbjct: 182 GVTLTDDQVQSIVNLVSASVEGMKATDVAVIDSSGAVLSAVGTGLAGSGGNKQ-TVEYEQ 240

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
            +  +I   L   +GV      V A+L+ D  +  +  +     V      +   + +  
Sbjct: 241 RVAQSIQAMLEPIVGVGKAVVTVTADLDYDATERTQESFSSAEGVLPLTERTTTEEFAGG 300

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
             P + V    N+      +VP   +  +   +  ++N  ++  +  T      + R S+
Sbjct: 301 GNPATGVLGPDNI------QVPNGTADGSYTNETSEANNAVDKLTEHTVTAPGTVRRQSV 354

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           A                        +A++  +VS+A+G +  RGD +T++ M F  +   
Sbjct: 355 A------------VAVDAAAAAAVDMAQLQAMVSSASGFDEARGDVVTVSQMPFDTSAAE 402

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           ++     +  +  +   ++ +     + G  L+  + L         +     E      
Sbjct: 403 SAQAALDAAAEAEAAAASSRMMQTYVIAGAALLALVLLAIFLARRGRNREDPRESLDLGD 462

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
           L       A+    +    + L    +   +   +++ + N          +  +++   
Sbjct: 463 LPIMDEPLALEPADLDTQLLELPEVPELPSAEQVSIERKRND---------VALLVDEQP 513

Query: 540 ERFAKILRKWARS 552
           E+ A++LR W   
Sbjct: 514 EQVAELLRGWMDE 526


>gi|325567531|ref|ZP_08144198.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC
           12755]
 gi|325158964|gb|EGC71110.1| flagellar M-ring protein fliF [Enterococcus casseliflavus ATCC
           12755]
          Length = 541

 Score =  257 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 236/564 (41%), Gaps = 37/564 (6%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + +   Q           + +I+   ++  + +  A  +      Y  L+  L  +D
Sbjct: 2   MDKVKEWTEQLKDRWQMQSSLKKMIVVLSVISVLGITAAVYYLNTRIEYGILFTDLSDAD 61

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA-AQGLPSSSSNSGYELFDKVN 118
              IS  L E  I ++++DNG++I +    V + RI+LA    LP++S  +G+ELFD  N
Sbjct: 62  AGTISKDLDEQQIAYKLADNGTTILIDKDQVDEYRINLAVDNKLPNTS--TGFELFDDAN 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
               T   ++I   RA+ GE+ R I+SI  + +A+V +VMP+   F    + PTAS+++ 
Sbjct: 120 MM-TTDEDRKIMYQRAVTGELQRAIESIDAVKSAKVLLVMPEESVFSSEESAPTASIVLS 178

Query: 179 AI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
                   +S + I  L + AV  L   +V V+DS G  LT  E E      +  K ++I
Sbjct: 179 LKNQQISDESVQGIVTLTSGAVEKLKPENVKVVDSAGNTLTRTEDEASQLSGLNNKYIAI 238

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
             + +  +E  + K L    G D F+ ++  +LN D+ + +++ YD       +++ +  
Sbjct: 239 KDSYEKTLEEKVAKLLTPIYGADKFQVSINLDLNFDSIERKKVTYDDPEIKSETVQAAGS 298

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               + +Q  +      N+              E  +        E++T++  T      
Sbjct: 299 QGTVQEAQTGTVDDNVSNV---------TGTDGEGNNSYSRSVENELDTETTTTITAPGM 349

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           +ER++ ++V+N                  +  AE+ +++++A G ++ RGD I I   DF
Sbjct: 350 IERMTSSIVIN-------------ANLSQADQAELQQLIASAVGYDNDRGDQIAIQGFDF 396

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
            + ++  +   Q +     ++ +         ++   LV  + +  +RR    D+ +   
Sbjct: 397 AQAEVDPAADPQGNEQIAAAKGYVKYAIIGGIVLTLFLVILMIVGVIRRRRKEDELEVDV 456

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK-----QSD 528
                  + P  +S   +  +  + +     N+   +     ++      ++       D
Sbjct: 457 TDEMVTFAQPSAASIGASNPVAQEVVFGGVGNRSAETKPAVPEASTQEATAEHTGEPTLD 516

Query: 529 LRLLHMIEINEERFAKILRKWARS 552
               +  E N E  A++++ W + 
Sbjct: 517 QTARNYAESNPEVAAELIKAWMKE 540


>gi|297584035|ref|YP_003699815.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10]
 gi|297142492|gb|ADH99249.1| flagellar M-ring protein FliF [Bacillus selenitireducens MLS10]
          Length = 528

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 87/564 (15%), Positives = 194/564 (34%), Gaps = 70/564 (12%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +   S  + +  +L   +++ I   +A  +  +  +   LY  L + +   I   L    
Sbjct: 14  EFWQSRSKKQRGLLIGAVVLIIAFIIALSWVGSRTNLVPLYSNLTIQETGEIKANLDGRG 73

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           I   +S +G+SI VP + V   ++ LAA+G+P +     Y  F     FG T    ++  
Sbjct: 74  IQNEVSADGTSILVPETAVDNLKVELAAEGIPQTG-RIDYGTFGDNMGFGTTDSEFQLLE 132

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSVYKSA 188
             AL+  +   I+++ G+  A+V I +P+   + +       + ++   +A         
Sbjct: 133 RAALQTTLEDLIRNVDGVTNAQVMITLPEESVWLQETPSEATASILLNMQAGYSLDESQI 192

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEIE 242
            ++ HL + +VPNL + ++ ++D   + L   +                +I + I+ +++
Sbjct: 193 RSLYHLASRSVPNLPVENIVIMDQFSRYLELEDQPGMADSSLSVYEQHRAIQRDIERDLQ 252

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRS 297
            ++ + L   +G D    ++  +L+   +   E + +P        +  S+    +    
Sbjct: 253 RDLQQMLGTMMGPDKVLVSISTDLDFTEENRTEDLVEPVDEENMEGIAISVERITETFSG 312

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           E           ++                + +  EE+ N ++N      T   Y+L  +
Sbjct: 313 EDIADGGVPGAGEDDIPNFPGVGA-GAGAGDYELIEERINNDVNRIHREITESPYQLRDI 371

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-------NSRRGDTITITS 410
           SI V+V           S  Q  +D   A + +IV             +    D + ++ 
Sbjct: 372 SIQVMVEPP--DPEDIGSLPQQTLDDIQAMLTQIVRTTIPDEVTAEWGDEELADRVLVSP 429

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
            +F     F      + +                 ++G +++  + L   R         
Sbjct: 430 QEFFGRVEFEEPQTGIPWW---------YFLVGALVLGAVILAVVLLRRGR--------- 471

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                             VT      D+  L   ++   +                   +
Sbjct: 472 ---------------EEEVTEVASAEDDFRLPPIDKKPQTEEGA------------RKQQ 504

Query: 531 LLHMIEINEERFAKILRKWARSEI 554
           L  + +   + F+K++R W   E 
Sbjct: 505 LEDLAKDKPDEFSKLIRTWLSDEN 528


>gi|149182503|ref|ZP_01860976.1| flagellar M-ring protein [Bacillus sp. SG-1]
 gi|148849763|gb|EDL63940.1| flagellar M-ring protein [Bacillus sp. SG-1]
          Length = 529

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 100/564 (17%), Positives = 192/564 (34%), Gaps = 63/564 (11%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            Q     ++  + +  +     LV I+      F     +   LY  L  S+   I   L
Sbjct: 11  EQLNTFWSARTKKQKGMYGVAALVIILAIAVTGFLSTRTNLVPLYSNLAPSETGSIKENL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I   I+D GS+I VPS MV   ++ LAA+G+P+S S   Y  F +   FG+T    
Sbjct: 71  DGRGIVSEITDGGSTIMVPSEMVDTLKVELAAEGIPNSGS-IDYSFFSQNAGFGMTDNEF 129

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIRAINPSV 184
            + ++ A++ E+A  ++ I G+  A V I +P+ G F       A  +  +  +      
Sbjct: 130 NVMKLDAMQTELANLMKGIEGVQDANVMITLPEKGVFISDAVEQASASIVLNTKPGFNFD 189

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAIQHEI 241
            K  +++ HLV+ +VP+L   ++ +++   +         +  G   + + I   ++ +I
Sbjct: 190 QKQIKSLYHLVSKSVPDLPTDNIVIMNQLFEYFEMENENSSFGGTVVQQMDIKDRVEKDI 249

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQR 296
           +  +   L   +G +    +V  +++   +        P        +  S++   +   
Sbjct: 250 QKQVQSMLGTLIGFNKVVVSVTTDIDFTQENREVNEVTPVDAENMEGIAVSVQRITETFT 309

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                       E +        V    S  + ++ EE  N E+N          YK+  
Sbjct: 310 GNGQTAGGVPAAE-DAGDGLGTYVEGENSNGDYERMEETINNEVNRIRREIVESPYKIRD 368

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRRGDTITIT 409
           + I V+V           S  Q + +     ++ I+  +               D I ++
Sbjct: 369 IGIQVMVEPP--DPEDPNSFPQDRQEDISQILSTIIRTSIDKEAGTELTPEAIEDKIVVS 426

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
              F     F   T                   +V  +   ++  L    +RR   + + 
Sbjct: 427 VQPFNGKMEFEQETPSALPWWT----------YVVGGILLAVIILLIFLMVRRNKTVVEE 476

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
           +      +  ++ P I +   T                                S     
Sbjct: 477 EVVYEERQQPVNIPDIDTEKET-------------------------------ESSVRRK 505

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           +L  M     E FAK+LR W   E
Sbjct: 506 QLEKMAREKPEEFAKLLRSWLADE 529


>gi|330899425|gb|EGH30844.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 319

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 4/295 (1%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+ 
Sbjct: 85  AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYK 186
               R LEGE+ARTI +++ +  ARVH+ +P    F +   +P+ASV++           
Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPS 204

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMN 244
              AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  +   
Sbjct: 205 QVMAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGMLTQR 264

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSET 299
           +   L   LG D +++ V A ++    +     ++PD    RS +   + + S +
Sbjct: 265 VQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSVNEQRSSSS 319


>gi|319649567|ref|ZP_08003723.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2]
 gi|317398729|gb|EFV79411.1| flagellar M-ring protein [Bacillus sp. 2_A_57_CT2]
          Length = 533

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/569 (17%), Positives = 197/569 (34%), Gaps = 66/569 (11%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +  +  +S  + +  ++     + I+L  AA F         LY  L  S+   I  +
Sbjct: 9   IGKVKEYWSSRTKKQKTVMIGAAAICILLIAAAAFLSTRTTLVPLYSNLTPSETGTIKES 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L    +   I+D G++I VP   V   ++ LAA+G+P S S   Y  F +    G+T   
Sbjct: 69  LDTRGVVSEIADGGTTIKVPEEAVDSLKVELAAEGIPKSGS-IDYSFFSQNAGIGMTENE 127

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRAINPS 183
             + ++ A++ E+A  ++ I G+  A+V I +P+ G F       A  +  +  +     
Sbjct: 128 FNVLKLEAMQTELANLMKGIDGVNDAKVMINLPEKGIFVNDSSEEASASIVLNTKPGYQF 187

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL----GKSLSIVQAIQH 239
                +A+ HL A ++PNL   ++ + +   +       + +           I + I+ 
Sbjct: 188 EESQIQALYHLAAKSIPNLPTDNIVITNQFFEYFDLKNKQNSSSESTFAAQHEIKKEIER 247

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDA 294
           +++  +   L   +G D    +V A+++   +   E +  P        +  S +   + 
Sbjct: 248 DVQRQVQNMLGTLMGQDKVVVSVTADIDFTQENREENLVTPVDEENMEGIAISAQKITET 307

Query: 295 QRSETSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
                        +  N  P  +D  V    S  + ++ EE  N E+N          YK
Sbjct: 308 FTGNGEGAGGTPALGGNDEPAGTDSYVATGDSSGDYERIEETINNEVNKIRREIVESPYK 367

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG---------INSRRGD 404
           +  L I V+V      +    S  Q +I+     +  +V               +    D
Sbjct: 368 VRDLGIQVMVEPPTADDP--ASLPQERINDITQILGTVVRTTINKDAAADAELTDEAIQD 425

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I ++   F     F + T       I            +  V  L++  L    ++   
Sbjct: 426 KIVVSVQPFNGKVEFTNETSTRIPWWI----------YAIGGVLLLIIVLLIFLFVKARK 475

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                ++ EV      + P ++    T                                S
Sbjct: 476 RQKQEEEMEVQTAETFNLPDVNEEHET-------------------------------ES 504

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
                +L  M +   E FAK+LR W   +
Sbjct: 505 TVRRKQLEKMAKEKPEDFAKLLRTWIAED 533


>gi|153953778|ref|YP_001394543.1| flagellar MS-ring protein [Clostridium kluyveri DSM 555]
 gi|219854394|ref|YP_002471516.1| hypothetical protein CKR_1051 [Clostridium kluyveri NBRC 12016]
 gi|146346659|gb|EDK33195.1| FliF [Clostridium kluyveri DSM 555]
 gi|219568118|dbj|BAH06102.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 527

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 209/568 (36%), Gaps = 59/568 (10%)

Query: 4   LDQLLQFFKSG----TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           + +L Q FK+       L + + +    +    I   + A   +    Y  L+  ++  D
Sbjct: 1   MGKLSQIFKNLIDKFKKLSKNKKIAFGVITAGIIAAIVFAAISLGKTKYAVLFSNMDSKD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++ +   L E  +D ++   G+SI VP   V   R+ + ++ +  ++ + G+EL D+ + 
Sbjct: 61  LSSVYKQLQEDKVDVKV--EGNSILVPEGEVDATRMKVLSE-VEITNGSEGFELLDQ-SK 116

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T    +I   RAL+GE+ RTI+S+  +  ARVH+V+PD   F K  +  +ASV ++ 
Sbjct: 117 LGSTDTEIKINYQRALQGELERTIKSLPEVENARVHLVLPDDTEFVKDTSPGSASVTLKL 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN--------EMERNILGK 229
                   +  +A+  LV+ AV N+   +V V+D    LL+ +        E       K
Sbjct: 177 KEGEELSKEQVKALVSLVSGAVKNVPKENVQVIDDNMTLLSKDLFEDEANSEDSTIPAEK 236

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
              + +  +  +E N+   L A  G D  +  V A+L+ D  Q     YD +S V     
Sbjct: 237 QQQLKEQYEKNLEKNLLSMLEAVYGKDKVQVKVNADLDFDAVQQNSTTYDNNSVVVSEHT 296

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
           +++  Q   T+Q          + +     +    +  N+   E   NY +      T  
Sbjct: 297 INETNQGDTTNQTG------SPVDNNMSNTITNNTTGGNSTYNETTRNYNVPKVEQKTVK 350

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++RL+ +V ++                 D+    I  +  +A G +  RGDTI++ 
Sbjct: 351 APGSVKRLTASVALDGDV-------------DDATTTAIRNLAVSAIGYDGNRGDTISVE 397

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
            + F      N+                                         +  I  A
Sbjct: 398 GLPFDTTAKDNAQKDMEDMEQAEQAAKRN-------------------RLFAVIGGIAAA 438

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD- 528
               + G  I         +    +    I +   ++D  +  +     +      +   
Sbjct: 439 IIATIIGVIIWRRRHAEDELLEDELRPGGIDVVIGDEDTKASEKIKFKPLELEQDTEDVH 498

Query: 529 --LRLLHMIEINEERFAKILRKWARSEI 554
               +    +   ++ A I++ W   + 
Sbjct: 499 IEREIKKYAKDKPDQVADIIKSWLAEDE 526


>gi|157692300|ref|YP_001486762.1| flagellar MS-ring protein [Bacillus pumilus SAFR-032]
 gi|157681058|gb|ABV62202.1| flagellar basal-body M-ring protein [Bacillus pumilus SAFR-032]
          Length = 530

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/563 (16%), Positives = 211/563 (37%), Gaps = 48/563 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  + ++F+++ + L   + +++   +    ++      F +S     L+  L  S+ 
Sbjct: 6   MQLRTKTVEFWRNRSKL---QKILMIGGVAALAIIITVVSIFASSEKMVPLFKDLSESEA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    I   +++NG++I VP       ++ LA+QGLP +     Y  F   + F
Sbjct: 63  GQIKQELDGKKIKSELANNGTTILVPEKQADSLKVTLASQGLPKTG-KIDYSFFANNSGF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I +I GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 122 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 181

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234
                   +  + + HL++ +VPNL   ++ ++D         ++++   + +       
Sbjct: 182 ERGYTLSPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRL 290
           + I+  ++  I + L   +G +    +V  +++   ++ +E + +P    + +       
Sbjct: 242 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 301

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                 S             +    + +         N +K E++ NYE+N         
Sbjct: 302 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGNYEKSEDRINYEVNRIHKDIKES 361

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            YK+  + I  +V      +V   S    + D     ++ I+S +       G  +T   
Sbjct: 362 PYKIRDVGIQALVEPPTANDVN--SLTAERQDDIKKILSTIISTSIDKEYTNGQALTQAD 419

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
              L+N++  S +         + + +  I   V++VG +                    
Sbjct: 420 ---LDNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVGGV-------------------L 457

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
              +    IL               ++   L   + D    +  +              +
Sbjct: 458 LLAIIALIILLVRRRRKEEEEEFEFDERTPLHVPDIDTEPETEEM----------VRKNQ 507

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  M +   E FAK+LR W   +
Sbjct: 508 LEKMAKDKPEDFAKLLRSWLSED 530


>gi|261313942|ref|ZP_05953139.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
 gi|261302968|gb|EEY06465.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 335

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 2/328 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 247

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 248 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 307

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN 328
           + ++A  VEQN+P    +      S E 
Sbjct: 308 RNDNATGVEQNIPQEQIQNRNGESSTEK 335


>gi|254706488|ref|ZP_05168316.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 330

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 143/328 (43%), Positives = 206/328 (62%), Gaps = 2/328 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 4   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-KSLSIVQAIQHE 240
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N     + S+ Q +   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAALMTASLEQQVASH 242

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 243 VDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 302

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLEN 328
           + ++A  VEQN+P    +      S E 
Sbjct: 303 RNDNATGVEQNIPQEQIQNRNGESSTEK 330


>gi|308173583|ref|YP_003920288.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM
           7]
 gi|307606447|emb|CBI42818.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens DSM
           7]
          Length = 536

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 95/574 (16%), Positives = 197/574 (34%), Gaps = 63/574 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++    +      +  +T+ +++ S +   I+L +    F +S     LY  L   +  
Sbjct: 4   TLMQMKTKTSAFWNNRSKTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   Y  F K   FG
Sbjct: 64  QIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI--R 178
           LT    ++ +V A + E++  I  + GI +++V I MP    F  +     +AS+++  +
Sbjct: 123 LTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQIK 182

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIV 234
                       + HLV+ +VPNL   ++ ++D        ++       +       I 
Sbjct: 183 PGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGIK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
             ++ +I+ ++   L   +G D    +V A+++   ++  E + +P        +  S  
Sbjct: 243 SQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISAE 302

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              +  + + +          N    +        +  + +K   + NYE+N        
Sbjct: 303 KVAETYKGDGAANGGTAGTGSN-DTANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIAE 361

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----------IN 399
             YK+  L I V+V           ++   +  + + +I   V   +            N
Sbjct: 362 SPYKVRDLGIQVMVEPP---NPKNAASLTAQRQADIQKILGTVVRTSLDKNEAQNQKLTN 418

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           +   + I ++   F      N+ +   S + I       V                    
Sbjct: 419 NDINNKIVVSVQPFDGKVSTNTASANSSGLPIWVYITGGV-------------------- 458

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
                             + +    I          ++    +           ++    
Sbjct: 459 ----------------LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEQ 502

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           N         +L  M +   E FAK+LR W   +
Sbjct: 503 NETEETVRRKQLEKMAKEKPEDFAKLLRSWLDED 536


>gi|256370955|ref|YP_003108779.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007539|gb|ACU53106.1| flagellar M-ring protein FliF [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 513

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 105/554 (18%), Positives = 206/554 (37%), Gaps = 54/554 (9%)

Query: 2   AILDQLLQFFKSG-TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
            +L +     +   +     +  ++   I + + + +A     +SP Y  L+  L   D 
Sbjct: 5   DLLAKARDSLRRFASGFTTGQKAVVMVGIALVVAIAVALASLTSSPSYGVLFSGLSAQDA 64

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I+  L  A + + +++ G+++ VP ++V + R+ LA  GLPS    +G    + ++  
Sbjct: 65  GSITAKLQSAGVPYELTNGGTTVLVPQNLVDQERVSLAEAGLPSQ--TAGLTSLNGLS-I 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMI 177
             +   Q+     AL+ ++A+TI++I+G+ +A+V++ +P   +F   +      +  V +
Sbjct: 122 TSSQITQQADYQAALQSQLAQTIEAINGVQSAQVNLALPPTDAFAIGQSSQPSASVIVTL 181

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI 237
            A      +  EAI HLVA+A+P ++  DVTV D  G +L A  +  N  G   S  Q  
Sbjct: 182 DAGVSLTSQQVEAIVHLVASAIPGMNANDVTVADQNGDVLAAPGLGVNAQGAGQS-AQGF 240

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
             ++E +I   L   +G  N    V A L+ +    +            +       Q  
Sbjct: 241 DSQLEASIQSMLDTIVGPGNANVRVAATLSTNQVTTKTQSIQTQKGKPLTTPTQTQTQTQ 300

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             +   +           +         +    +    + Y I   +         ++RL
Sbjct: 301 TFTGNGTVPGGTL----GTTGIATTGNQVSTYKQTSSTTQYAIGQVTQTVQQAPGAIQRL 356

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AV VN                    LA++ ++V+AA GI   RGDT+++ ++ F    
Sbjct: 357 SVAVAVNSHVKGL-------------SLAKLRQVVAAAAGIVPARGDTLSVVAVPF---- 399

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                T        L      +   ++ ++G L    L                      
Sbjct: 400 -PALATTPSGAGSSLFGSILGIAKVVLLVLGALGAILLMSR-----------------AA 441

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           +     P+  A     +      L    +++ + +      +           +L  I+ 
Sbjct: 442 ARTEVEPLFPAELEPALAGTGGQLAGPTEELPAVALPQSQPVVGED-------VLDYIDR 494

Query: 538 NEERFAKILRKWAR 551
             E  AK+LR W  
Sbjct: 495 QPEDVAKLLRVWMT 508


>gi|154686037|ref|YP_001421198.1| flagellar MS-ring protein [Bacillus amyloliquefaciens FZB42]
 gi|154351888|gb|ABS73967.1| FliF [Bacillus amyloliquefaciens FZB42]
          Length = 536

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 93/574 (16%), Positives = 194/574 (33%), Gaps = 63/574 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++    +      +  +T+ +++ S +   I+L +    F +S     LY  L   +  
Sbjct: 4   TLMQMKTKTAAFWNNRSKTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   Y  F +   FG
Sbjct: 64  KIKEELDTKKVSSELADGGTVIKVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGQNAGFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---R 178
           LT    ++ +V A + E++  I  + GI +++V I MP    F        ++ ++   +
Sbjct: 123 LTDNEFDVLKVEATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPAASASIVLQMK 182

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIV 234
                       + HLV+ +VPNL   ++ ++D        ++       +       I 
Sbjct: 183 PGYSLDQNQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGIK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
             ++ +I+ ++   L   +G D    +V A+++   ++  E   +P        +  S  
Sbjct: 243 SQVEKDIQKHVQSLLGTMMGQDKVVVSVTADVDFTKEKRTEDTVEPVDKDNMEGIAVSAE 302

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              +  + + +          N    +  +     +  + +K   + NYE+N        
Sbjct: 303 KVAETYKGDGAANGGTAGTGSN-DTANYAETNGGSNSGDYEKSSNKINYEVNRIHKEIAE 361

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGIN 399
             YK+  L I V+V           ++   +  + + +I   V                +
Sbjct: 362 SPYKVRDLGIQVMVEPP---NPKNAASLSAQRQADIQKILGTVVRTSLDKNETQNQNLTD 418

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           +   + I ++   F      N+ + Q S + I       V                    
Sbjct: 419 NDINNKIVVSVQPFDGKTSLNTDSAQSSGLPIWVYITGGV-------------------- 458

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
                 +       +                    P + + L   N++            
Sbjct: 459 -----LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEKIETEE------ 507

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     +L  M +   E FAK+LR W   +
Sbjct: 508 -----TVRRKQLEKMAKEKPEDFAKLLRSWLDED 536


>gi|328553485|gb|AEB23977.1| flagellar MS-ring protein [Bacillus amyloliquefaciens TA208]
          Length = 531

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 199/575 (34%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  +   F+ +     +T+ +++ S +   I+L +    F +S     LY  L   + 
Sbjct: 1   MQMKTKTSAFWNNR---SKTQKILMVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   ++D G+ I VP S V   ++ LAA+GLP + S   Y  F K   F
Sbjct: 58  GQIKEELDTKKVSSELADGGTVIMVPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMI-- 177
           GLT    ++ +V A + E++  I  + GI +++V I MP    F  +     +AS+++  
Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINEMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQI 176

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
           +            + HLV+ +VPNL   ++ ++D        ++       +       I
Sbjct: 177 KPGYSLDQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGI 236

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   ++  E + +P        +  S 
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISA 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +          N    +        +  + +K   + NYE+N       
Sbjct: 297 EKVAETYKGDGAANGGTAGTGSN-DTANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIA 355

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG----------I 398
              YK+  L I V+V           ++   +  + + +I   V   +            
Sbjct: 356 ESPYKVRDLGIQVMVEPP---NPKNAASLTAQRQADIQKILGTVVRTSLDKNEAQNQKLT 412

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           N+   + I ++   F      N+ +   S + I       V                   
Sbjct: 413 NNDINNKIVVSVQPFDGKVSTNTASANSSGLPIWVYITGGV------------------- 453

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                              + +    I          ++    +           ++   
Sbjct: 454 -----------------LLAAIILLIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEE 496

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            N         +L  M +   E FAK+LR W   +
Sbjct: 497 QNETEETVRRKQLEKMAKEKPEDFAKLLRSWLDED 531


>gi|326386946|ref|ZP_08208560.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208626|gb|EGD59429.1| flagellar M-ring protein FliF [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 561

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 102/555 (18%), Positives = 197/555 (35%), Gaps = 45/555 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                S    R  +     +  + +       +       LY  L  S+  +++ AL +A
Sbjct: 32  LGQFASQAPVRRALPWFAGVAAVGMAGLLWLEMAPAPQRVLYTDLNDSERAQVTAALDKA 91

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I + I++   +++V    + KAR+  AA G  + ++    E        G +  ++   
Sbjct: 92  AIRYTINNQTGAVTVGEDDLYKARMVAAADG--ALATPETGEQMIDKLPMGASRTVEGQR 149

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188
              A E E+  TI  I G+ A RVH+  P+   F +  A  TASVM++            
Sbjct: 150 LQAARERELELTIMQIEGVEAVRVHLAEPEKSVFVRDNAPATASVMVKLAKGRQLSDSQV 209

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
            AI +LVA +V  L +  V V+D  G LL+     R      + +   ++ ++   +   
Sbjct: 210 TAIVNLVAGSVAGLSVDAVKVIDQQGHLLS---SGRPGDDDRIEMQARLEDKLRQQVETL 266

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L   LG  NF S +  +L+MD Q      YD    V    + +  +Q +    P     V
Sbjct: 267 LTPMLGTGNFSSEIQVDLDMDQQTSARESYDKQGVVRSETQTA--SQTTGNGAPVGVPGV 324

Query: 309 EQN-----------MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
             N            P  +      P     +       NYE+  +   T     K+ RL
Sbjct: 325 LSNTPPPQTQPSPGAPTANTTPASPPAPSPTSSDTSSTRNYELGREVAVTNASPGKVRRL 384

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AV ++   + +              + +I ++VSAA G +  RGD +T+   +F    
Sbjct: 385 SVAVALSGAAMAKAK---------PGEIDQIKQLVSAAVGADPTRGDQVTVVVRNFQPTT 435

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
           +      +  +  ++ R+   ++  L+ L+        G+  L +    D     ++   
Sbjct: 436 VEQPKFWETPWFAMMVRNGVALLAVLLTLLL-------GVRPLIKALRRDHRGAAKIESD 488

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
                    +  +                ++          ++  +  +       ++  
Sbjct: 489 ESEDSETAEAEDSEPE---------PDRPELIPAQNPDTGVVDPELLGRQVGLAQRLVRE 539

Query: 538 NEERFAKILRKWARS 552
             E    +LR+  + 
Sbjct: 540 RPETAVAVLRQMLKD 554


>gi|126653749|ref|ZP_01725667.1| flagellar M-ring protein [Bacillus sp. B14905]
 gi|126589713|gb|EAZ83849.1| flagellar M-ring protein [Bacillus sp. B14905]
          Length = 531

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 86/571 (15%), Positives = 195/571 (34%), Gaps = 67/571 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +   QF+K   S  + + +++   ++  I L     FF +   Y  LY  L   ++ +
Sbjct: 8   IKNDTSQFWK---SRSKKQKIVMVGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIGQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL    + ++I+  G+SI VP   V    + LA++G P +     Y  F   + FG+
Sbjct: 65  VKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTG-TIDYS-FANSSGFGM 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRA 179
           T     + +  A E EIA+  +++ G+  A+V I +P+ G F    K  A  +  +    
Sbjct: 123 TDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTDP 182

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIV 234
                 +    + +LV+ ++PNL   ++ + +   +       T +          L + 
Sbjct: 183 GYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGTSTATAEGQLQMK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + ++ +++  +   L   +G D    +V  +++   +   E +  P        +  S +
Sbjct: 243 KLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISAQ 302

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              +      +   +     +                 + ++ EE  N ++N        
Sbjct: 303 RITEQYSGTGAAAATGTPEAETTTDNFTTYNEGTSGNGDYERTEETINNDVNRIRKDIQE 362

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRR 402
             YK++ + I V+V     T+    S   G  +     ++ IV      +        + 
Sbjct: 363 APYKVQDIGIQVIVEPPTATDA--ASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            + + ++           +    +    +        +   + L   +L+ F  + + +R
Sbjct: 421 DEKVAVSVQPLYGKATQVADEKPMIPWWVW-------VIGGILLAVIVLLAFFIIRSRKR 473

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
               ++    E     ++            +                             
Sbjct: 474 AQEEEELSILEEQEDLMIDDINEEIETEATM----------------------------- 504

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  +L  M +   + FAK+LR W   +
Sbjct: 505 ----RRKQLEKMAKDKPDDFAKLLRSWIAED 531


>gi|194014358|ref|ZP_03052975.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061]
 gi|194013384|gb|EDW22949.1| flagellar M-ring protein FliF [Bacillus pumilus ATCC 7061]
          Length = 525

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 90/563 (15%), Positives = 210/563 (37%), Gaps = 48/563 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M +  + ++F+++ + L   + +++   +    ++      F +S     L+  L  ++ 
Sbjct: 1   MQLRTKTVEFWRNRSKL---QKILMIGGVAALAIIITVVSIFASSEKMVPLFRDLSEAEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L   N+   +++NG++I VP       ++ LA++GLP +  N  Y  F   + F
Sbjct: 58  GQIKQELDGKNVKSELANNGTTILVPEKQADSLKVTLASEGLPKTG-NIDYSFFANNSGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRA 179
           GLT    ++ +V A + E++  I +I GI  ++V I +P    F  +  +  +AS++++ 
Sbjct: 117 GLTDNEFDVLKVDATQTELSNLINTIDGIKDSKVMINLPKDSVFVGEEQSNASASIVLQV 176

Query: 180 --INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234
                   +  + + HL++ +VPNL   ++ ++D         ++++   + +       
Sbjct: 177 ERGYTLAPQQVKGLYHLISKSVPNLKTENIVIMDQDSNYYDLNSSSDSYASGMDAQQQKK 236

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP----DSKVERSIRL 290
           + I+  ++  I + L   +G +    +V  +++   ++ +E + +P    + +       
Sbjct: 237 EEIEKNLQRKIQQLLGTMMGQEKVAVSVTTDIDFTEEKRKEDLVEPVDKENMQGIAVSAE 296

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                 S             +    + +         + +K E++ NYE+N         
Sbjct: 297 KIAETYSGNGAAAGGTAGTGDDDVTNYQGADGANGSGDYEKSEDRINYEVNRIHKDIKES 356

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410
            YK+  + I  +V      +V   S    + D     ++ I+S +       G  +T   
Sbjct: 357 PYKIRDVGIQALVEPPTANDVN--SLTAERQDDIKKILSTIISTSIDKEYTNGQALTQAD 414

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           +D       +    +         +   +   +V  V  L +  L +  +R+    ++ +
Sbjct: 415 LDNKIVLSVSKLDGKQQTAAENPSNNIPIWVYIVGGVLLLAIIALIILLVRKRRKEEEEE 474

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                   I  P   +   T  +                                    +
Sbjct: 475 FEFDEHTPIHVPDIDTEPETEEM--------------------------------VRKNQ 502

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  M +   E FAK+LR W   +
Sbjct: 503 LEKMAKDKPEDFAKLLRSWLSED 525


>gi|229918627|ref|YP_002887273.1| flagellar MS-ring protein [Exiguobacterium sp. AT1b]
 gi|229470056|gb|ACQ71828.1| flagellar M-ring protein FliF [Exiguobacterium sp. AT1b]
          Length = 523

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 101/572 (17%), Positives = 206/572 (36%), Gaps = 68/572 (11%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   + ++      +  ++   R L+    I V ++  +   FF++ P+   LY  L   
Sbjct: 1   MNEQLKERFKSMTDALKAMPAKRKLVWGISIAVILIAALVLTFFLSRPNMAPLYTNLSAQ 60

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           +   ++  L+   +   I  + NG S+ VP+ MV + ++ LAA G+P S S   Y  F +
Sbjct: 61  EAGEVTEKLTADGVQSEIKATSNGVSVYVPTEMVDQLKVSLAAAGIPKSGS-IDYSFFSE 119

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASV 175
              FG T     +    A++ E+ R I  I GI  A+V I +P+   F  +    PTAS+
Sbjct: 120 NAGFGTTDREMAVIERSAMQTELERLITQIEGINQAKVIISLPEKSVFLAEDQGEPTASI 179

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL--LTANEMERNILGKSL 231
           ++           + + + HL++ +VPNL   +++++D       L    +        L
Sbjct: 180 VLNIGAGTNLEPNTVKGLYHLISKSVPNLKPENISIMDQYFTYYDLDQTVVAGGSSSDPL 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           ++ + ++ ++   I + L+  LG  +   +V A+++       + +  P  +      ++
Sbjct: 240 ALKRQVEKDVRQQIQQMLSVLLGERSVLVSVTADIDTTQTAEEQNLVTPVDEENMEGIVT 299

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDR---KVPLPRSLENTDKKEEQSNYEINTKSIATT 348
              + +E     +    E      +D            E ++K  E  NYE+N  +    
Sbjct: 300 SAERIAEAYTGGTGTATEATGTGENDTINFPAATGEGTEESEKNHEIINYEVNRITKQIQ 359

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV-------SAATGINSR 401
           +  Y +  L + ++     +    G ++   +++  L  +   +       +     ++ 
Sbjct: 360 NAPYTIRDLGVQLI-----VEPPDGATSIDPQLEGDLETMMYSIIRTSLAKTDEAITDAE 414

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
               + + S  F E +   +      +    +   A V+ A            L   A+R
Sbjct: 415 LEQKVVVVSRPFAEVEEVAATEQPTPWWMYAAAAGAVVLLA------------LIFFAMR 462

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           R       +  E         P +                                    
Sbjct: 463 RRKQEVVEETNEWEVPYEDEVPDLDLEERGEG---------------------------- 494

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                   +L  + E N E FAK+LR W   E
Sbjct: 495 ---AVKKKQLEKLAESNPEEFAKLLRTWMSEE 523


>gi|328958284|ref|YP_004375670.1| flagellar M-ring protein [Carnobacterium sp. 17-4]
 gi|328674608|gb|AEB30654.1| flagellar M-ring protein [Carnobacterium sp. 17-4]
          Length = 524

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 227/565 (40%), Gaps = 53/565 (9%)

Query: 1   MAILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  + ++         +LG+++ + L  V++  + +  +  ++     Y  L+  LE +D
Sbjct: 1   MDGMKKIWTGIKDGWKNLGKSKQIGLVFVLIFVVSIVTSLTYYTQKVEYATLFSDLEEAD 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDKVN 118
              I   +    I +++ D+G++I +  + V   RI LA    LP S   +G+E+FD+ +
Sbjct: 61  AGTIVNDIKTKGIKYKLEDDGTTILIDQAQVDTYRIELAVNDMLPKS--TTGFEIFDETS 118

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASVM 176
               T   ++I   RA+ GE+ R+I ++  I  A+V + +P+   F   +  ++ +AS++
Sbjct: 119 MM-ATDEDRKIMYQRAVTGELERSISALDSIEQAKVMLSLPEDSVFTSEENQSQASASIV 177

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILG 228
           +     +     + + I  LV+ AV NL   ++ ++D+ G LL+    +       +++ 
Sbjct: 178 LTPISGSQIPMSAVQGIASLVSGAVDNLPKENIKIVDTAGNLLSTALEDEGNLNATDLVS 237

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
           K  +I ++ + E+E  + + L    G+D    AV A++N D+ +    + +      RS 
Sbjct: 238 KYQAITKSYEQELEQKLLQTLGPIYGMDKMTVAVNAKMNFDSNE--SEIINYGDSSVRSE 295

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
            +S              + VE+     +                   +NYE+N+++  T 
Sbjct: 296 AVS---------AGGGTIDVEEGEGFENSINQIQSGEEGGNSTYNRTTNYELNSETTNTI 346

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
               ++E+LS +V+ +                  +    +  IV+   G    R DTI+I
Sbjct: 347 KAPGEVEKLSASVIFDGN-------------LNPADQESLEAIVATTIGSVEER-DTISI 392

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
             +DF         T        +          LV  +  L++  + L  LR+ ++ DD
Sbjct: 393 QGIDFATTTDATDTTAPEQLKSSIRDTLVRYWPYLVGGLAILVILIVLLRLLRKRNDDDD 452

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
                   +      P+     T              +       +L+ ++N     + +
Sbjct: 453 ELDFFDEEEPEPIIEPVRPVRPTDE------------ERKAKEQADLKRQLN-KNMSEKE 499

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
             +    + + E  A +++ W + E
Sbjct: 500 STVRDYAKESPEGAADLIKIWMKDE 524


>gi|150020374|ref|YP_001305728.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429]
 gi|149792895|gb|ABR30343.1| flagellar M-ring protein FliF [Thermosipho melanesiensis BI429]
          Length = 489

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 192/518 (37%), Gaps = 39/518 (7%)

Query: 43  VNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSS-MVGKARIHLAAQG 101
           +N+P Y  L      +D   I   L  + I +++   G+ I +PSS  V + R+ LA+ G
Sbjct: 1   MNAPRYVLLITANNETDAGAIVQQLESSGIPYKVEA-GNRILIPSSYNVYEVRMKLASSG 59

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           +   +S+ G+E+ D+ + FG TSF +++   RAL+GE+ RTI +I+G+  ARVH+ +P  
Sbjct: 60  I-LGASSKGFEILDQTS-FGATSFDKQVNYQRALQGELERTIATINGVKYARVHLTLPKY 117

Query: 162 GSFRKI---GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
             + +      R +  +++        +  + I +L+  AV  L   +V V+D+ G+ L+
Sbjct: 118 TYYVRGDMAETRASVQLVLEPGASLSKEQVKGIIYLLTGAVEGLKPENVKVVDNFGRALS 177

Query: 219 A---NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
                +           +   ++      I  AL A  G+          LN    +   
Sbjct: 178 DLVNFDENTYAASTKAELKMQLERYYRSKIQPALEAVFGLGKVEVITDINLNWQKTEKTI 237

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
             Y          + ++  + +        V  E N+P    + +    S    +KK E 
Sbjct: 238 TTYSSPKGGFIRSKETESEKSTTFPSDGGPVGTESNIPTTYYQSLESSNSTL-YEKKHEI 296

Query: 336 SNYEINTKSIATTHDN-YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
           +NYE+N        +   ++E +S++V+++                      EINK+V+ 
Sbjct: 297 TNYELNQIVENIVQNTEGEIENISVSVIIDSSSTV----------FNKVSKNEINKMVAD 346

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
               +     + +  S              Q   +    +    +I  +  L+   ++ F
Sbjct: 347 VIQKSIAANASPSNISYSLAFIPFSRELEEQYQKLIQSEQTKKDIIFKISLLLIATVLMF 406

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
              + +        A+K  +    +L           G    + I  ++           
Sbjct: 407 FSSYGILLQIRKSKARKLVLQRYKMLEEEARKLVEKEGQEEAEEILSEAQK--------- 457

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                   V ++       +   + E  A I++ W   
Sbjct: 458 --------VIEELKNYAQQLAVKSPEETAAIIKIWLSE 487


>gi|296330835|ref|ZP_06873310.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674353|ref|YP_003866025.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151840|gb|EFG92714.1| flagellar MS-ring protein [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412597|gb|ADM37716.1| flagellar basal-body M-ring protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 531

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 93/575 (16%), Positives = 204/575 (35%), Gaps = 66/575 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L   + +++ S +   I++ +    F +S     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKL---QKILMISALAAIIIIGIIISVFASSSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKEELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---I 177
           GLT    ++ +V+A + E++  I  + GI  ++V I +P    F        ++ +   I
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMINLPKDAVFVGEEQSAASASIVLQI 176

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSI 233
           +            + HLV+ +VPNL   ++ ++D        ++ +     +       I
Sbjct: 177 QPGYTLEQSQINGLYHLVSKSVPNLKEDNIVIMDQNSTYYDKSDSDAGSYADSYSSQQGI 236

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288
              ++ +I+ ++   L   +G D    +V A+++   +   E + +P        +  S 
Sbjct: 237 KSQVEKDIQKHVQSLLGTMMGQDKVVVSVTADIDFTKENRTEDIVEPVDKENMEGIAVSA 296

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
               +  + + +          +    +           N +K   + NYE+N       
Sbjct: 297 EKVSETYQGDGAANGGTAGT-GDEDVTNYEADGENTESGNYEKSSNKINYEVNRIHKEIA 355

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV----------SAATGI 398
              YK+  L I V+V      +    ++   +    + +I   V                
Sbjct: 356 ESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDATQNQNLS 412

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           +    + I ++   F      ++ T + S + + +     V+ A + ++  +LV      
Sbjct: 413 DEDINNKIVVSVQPFDGKVNLDTNTEKSSGIPLWAYIVGGVLIAAIIVLIIMLV------ 466

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                                ++    +        +  ++   
Sbjct: 467 ------------------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEE 496

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            N         +L  M +   E FAK+LR W   +
Sbjct: 497 ENETAETVRRKQLEKMAKDKPEDFAKLLRSWLAED 531


>gi|172057888|ref|YP_001814348.1| flagellar MS-ring protein [Exiguobacterium sibiricum 255-15]
 gi|171990409|gb|ACB61331.1| flagellar M-ring protein FliF [Exiguobacterium sibiricum 255-15]
          Length = 522

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 94/568 (16%), Positives = 190/568 (33%), Gaps = 61/568 (10%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   +  +      +       +   +  +IL  I   + A  +++ P    LY KL   
Sbjct: 1   MNEGLKTRFGALKTTWQEWSLVKKATIIGIILFLIAAIIVAAIWLSKPTMTPLYSKLSPQ 60

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           +  +++  L+E  +   +    +G +I VP       ++ LA  G+P S     Y  F +
Sbjct: 61  EAGQVTEKLNEDGVKSEVVSGTDGVTILVPEESAENLKVELATAGIPKSG-QIDYSFFSE 119

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA-SV 175
              FG T     I     ++ E+   I  ++GI AA+V I +P+   F       +  SV
Sbjct: 120 NAGFGTTDKEMNILERDTMQTELENLITQVNGIDAAKVMITLPEKSVFLSDKEETSTVSV 179

Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS-LS 232
           ++ +   S       + + HL+A ++PNL   ++T++D         +  +   G   + 
Sbjct: 180 VLTSSAGSDLNQQTVQGLYHLIAKSIPNLKEENITIMDQYFTYYEPGKGAQTAGGTDPMQ 239

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERSIR 289
           + +  + ++   I + L+  LG      +V A++++  +Q  +      DPD        
Sbjct: 240 LKKTTEKDLRQQIQQMLSVVLGPQKALVSVTADVDVTQRQEEQKLVEPVDPDKIEGIVTS 299

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             K A+    +  E      +N      +      + + ++K  +  NYE+N  +   T 
Sbjct: 300 AEKVAEAYTGAANEGTAGTGENETINFPQ--GTGTTGDTSEKTHDIINYEVNRITKQITG 357

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY----LAEINKIVSAATGINSRRGDT 405
             Y++  L I V+V   +    +                   + K  +  T  ++   + 
Sbjct: 358 APYEIRDLGIQVIVEPPKGQNQIDPQLQTDLQTMMYSIIRTSLTKTDAKTTLTDAELANK 417

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
           + + S  F E       T                          L+V       +RR   
Sbjct: 418 VVVMSRPFAETPKQTVTTETTPMWVWF-----------ALGAAALVVIGAIFLLMRRRKT 466

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
            +  +  E        P   +                                 ++    
Sbjct: 467 AEIEELEEWTPIETEVPELSTE--------------------------------DTSDGA 494

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               +L  +   N + FAK+LR W   +
Sbjct: 495 VKRKQLEKLAASNPDEFAKLLRTWLAED 522


>gi|311030130|ref|ZP_07708220.1| flagellar MS-ring protein [Bacillus sp. m3-13]
          Length = 529

 Score =  249 bits (636), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 98/574 (17%), Positives = 198/574 (34%), Gaps = 69/574 (12%)

Query: 3   ILDQLLQF----FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + ++L +     F   TS  + +   + S ++V I    A  +F+N      LY  L V 
Sbjct: 1   MKERLQEIKTKTFSFWTSRTKAQKTAMLSTVIVSIFAIAAMVYFLNKTDMAPLYKDLTVQ 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +  +I   L    I  +I++NG++I VP   V   ++ LAA+GLP S S   Y  F + +
Sbjct: 61  ETGQIKEVLDGRGIQSQITNNGTAILVPQQSVDSLKVELAAEGLPKSGS-IDYGFFGERS 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMI 177
            FG+T     I ++ A++ E+A  ++SI G+  A+V + +P+ G F +      +AS++I
Sbjct: 120 GFGMTDNEFRIMKLDAMQTELANLVKSIEGVKEAQVMLSLPEEGVFVRESTQEASASIVI 179

Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL----TANEMERNILGKSL 231
                         A+ HLV+ ++PNL   ++ +++   +        +          L
Sbjct: 180 ENDPGYQFDQNHVNALYHLVSKSIPNLATDNIVIMNQNFEYFDLNNNQSSGNTFNASTQL 239

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER----- 286
            + + I+ +I+  + + L   +G +    +V  +++   +   E    P           
Sbjct: 240 ELKKEIERDIQRQVQQMLGMMMGYNKVVVSVTTDIDFTQEAREENRVTPVDPENMEGIAV 299

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
           S+    ++               +    +            + +K EE+ N E+N     
Sbjct: 300 SVERITESYTGSEDTAGGVPGTGE--ADIPAYVAGGGSGSGDYEKMEERINNEVNRIRSE 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN------- 399
                YK+  L I V+V      +    S  +  I+     ++ IV      N       
Sbjct: 358 IVESPYKVRDLGIQVMVEPPVADDP--LSMQENTINDIRQILSTIVRTTIDKNMLGEDPE 415

Query: 400 -SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
            +   + I ++  +F         T       +                           
Sbjct: 416 LANIDEKIVVSVQEFNGKVEMEESTESTIPTWVYI------------------------- 450

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                            G  +     +   +       +   +  + ++         + 
Sbjct: 451 ---------------AAGILLAVILLLLFLLFKRSSKEEEEEIMVTEEETVPFQVPDINN 495

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                S     +L  M +   + FAK+LR W   
Sbjct: 496 EKESESSARRKQLEKMAKEKPDEFAKLLRSWLSE 529


>gi|304321127|ref|YP_003854770.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503]
 gi|303300029|gb|ADM09628.1| flagellar M-ring protein FliF [Parvularcula bermudensis HTCC2503]
          Length = 485

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 191/467 (40%), Gaps = 8/467 (1%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI 95
            +A  F         L+  L  +    I   L E  + + I  +GS+I VP     + R+
Sbjct: 14  LLAMVFMAGGRTDALLFSGLSPAASGDIIGKLDEMAVPYTI--DGSAIYVPEGERDRLRL 71

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            LA  G+P +   +GYE+ D +N F  TS M +    RA EGE+ RTI +I  + AARVH
Sbjct: 72  ELARLGMPPAGG-AGYEILDDLNGFSTTSDMFDAAYWRAKEGELTRTILAIPTVTAARVH 130

Query: 156 IVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           + +    +FR+     +ASV + A        A++I++L A AVP L    V V+D+   
Sbjct: 131 LGVTRQSAFRRARLDKSASVTVEASGGLSKSQAQSIQYLTALAVPELRPESVAVIDTARG 190

Query: 216 LLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE 275
           ++       +       I    +  +   +   L A +G  N R +V  +++  +   +E
Sbjct: 191 VIAGPGATGDESPMGDEI--DREDRLASRLTHLLEAHVGPGNARVSVAMDIDRQSIAQKE 248

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH-VSDRKVPLPRSLENTDKKEE 334
            V DPDS+   S  +S+++     S  +  VT+  N+P   +        +     +++E
Sbjct: 249 RVIDPDSRQIVSRSISEESD--AESDADIPVTIASNLPDGDAAEDPEEAGTRLVKRRRDE 306

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
           +  Y               + RLS+AV++N+       G +    +    +  +  +V+ 
Sbjct: 307 EVTYTGTEIERVIETAAGTVRRLSVAVLLNERYTVNEEGETVPAPRSPEEVEALETLVAN 366

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A GI   RGD + I  + F   +             ++ R       +++ L+   +  F
Sbjct: 367 AAGIEDERGDRLAIRVLPFEGEEPQLVTAPGFVEAHVMPRAVDIAQFSVLALLVASIAFF 426

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
           +   AL        A+  E   K           + T   P+D  A+
Sbjct: 427 VLRPALSPKTPFAQAEIAEGEDKLENLDAAEVLTMLTEENPDDAAAI 473


>gi|289670544|ref|ZP_06491619.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 335

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 141/315 (44%), Gaps = 6/315 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTISTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++  +   +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQV--NDTSTTAT 312

Query: 301 QPESAVTVEQNMPHV 315
            P+       N P  
Sbjct: 313 GPQGPPGATSNSPGQ 327


>gi|225375317|ref|ZP_03752538.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM
           16841]
 gi|225212806|gb|EEG95160.1| hypothetical protein ROSEINA2194_00942 [Roseburia inulinivorans DSM
           16841]
          Length = 536

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/566 (15%), Positives = 183/566 (32%), Gaps = 41/566 (7%)

Query: 1   MAILDQLL----QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M + +Q+     +  +        +  +L S++ V ++        V+ P    L     
Sbjct: 1   MKMPEQVQKVLDRILEWWKKFNTKQKTLLISIVAVVLVALAILAAVVSKPKMVTLVTCAT 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            ++  ++   L   NI + +S +G +  V       A I L    +P+S +    ++FD 
Sbjct: 61  TAESGQVKNILDSENISYELSADGLAFQVNEKDYANASIVLGTNDIPTSGTKLS-DVFD- 118

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASV 175
              F  T   +       LE   A  ++++S + AA V + +PD   +    G +   + 
Sbjct: 119 -GGFSSTEADKTKKYKLYLEEYYAEKLETLSNVDAAAVTLDLPDEDGTILSKGEQAYVTA 177

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGKSLS 232
           ++        + A  +   +A  V N D  +V +LD++  +L + + + ++       LS
Sbjct: 178 ILTLNGTMDDEQAAGLAKYLATNVGNDDTSNVLILDNSSNVLFSGQDDTSVTGNANNQLS 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDT-QQIREIVYDPDSKVERSIRLS 291
           +    +++++  +   L      DN    +   +N D   +     Y PD +    +   
Sbjct: 238 LKTKAENQVKGQVKDVLVGSSLFDNVEVGLNLAMNFDQTTESTHEYYAPDGQTNGMVGSK 297

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            + + +      +    + N    +        +  ++   E  +NY+ N K   TT   
Sbjct: 298 SEYESNAVGGAAATPGTDSNDDDTTYVMEDNDYT--SSSVSETNTNYQNNEKITTTTPAV 355

Query: 352 YKLERL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
             +     SI+ V     + +     A     D    E     S        +     I+
Sbjct: 356 GTVNYDGSSISAVATNYVIYDEDTLRASGTLGDMTFDEYVVANSEPVKAEVDQDLYTLIS 415

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           +   +                       T+ + L  ++  L+   LG    R        
Sbjct: 416 NATGVPVSNITIIAYDQPMFQYSKGSTRTISDYLQIILAVLIFALLGYVVFRSTRK---- 471

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                                   +  +      S  +    S +    I      ++ +
Sbjct: 472 ---------------------EKAVEPEPELSVESLLESTKESADTLQDIGFNEKSETRV 510

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
            +   +E N E  A +LR W   E E
Sbjct: 511 LIEKFVEENPEAAASLLRNWLNEEWE 536


>gi|205373372|ref|ZP_03226176.1| flagellar MS-ring protein [Bacillus coahuilensis m4-4]
          Length = 504

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 97/550 (17%), Positives = 200/550 (36%), Gaps = 67/550 (12%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           +  V+L+ I+L +A  FF        LY  L  ++   I  +L    I   IS+ G++I 
Sbjct: 1   MGIVVLLTILLIVAVTFFSTRTALVPLYSNLSPAETGSIKESLDSKGITSEISEGGTTIL 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP+ MV   ++ LA++GLP + S   Y  F +   FG+T     + ++ A++ E+A  I+
Sbjct: 61  VPTEMVDTLKVQLASEGLPKTGS-IDYSFFSQNAGFGMTDNEFNVLKLDAMQTELALLIK 119

Query: 145 SISGIVAARVHIVMPDMGSFRKIG-ARPTASVMIR--AINPSVYKSAEAIRHLVAAAVPN 201
           SI G+  A V I +P+ G F      + +AS++++              + +LV+ +VPN
Sbjct: 120 SIEGVQDASVMISLPEQGIFVNDQTQQASASIVLQTQPGYQFEQSQISGLYNLVSKSVPN 179

Query: 202 LDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           L   ++ +++   +      +  +     +   + + + I+ +I+  +   L   +G + 
Sbjct: 180 LPTDNIVIMNQFFEYFELENVNNSSFAGNISSQMDVKKQIERDIQQQVQSMLGTLIGFNK 239

Query: 258 FRSAVVAELNMDTQQIREIVYDP------DSKVERSIRLSKDAQRSETSQPESAVTVEQN 311
              +V  +++   +   E +  P      +     + R+++       +        E  
Sbjct: 240 VVVSVSTDIDFTQEAREENLVVPVDEENLEGITMSAQRITETFTGEGANAAGGVPAGEDP 299

Query: 312 MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
              +    V       + ++ EE  NYE++          YK+  + I V+V        
Sbjct: 300 ADSLGTTYVGSTDGDGDYERIEETMNYEVSRVMKEIVESPYKVRDIGIQVMVEPPT---P 356

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGD--------TITITSMDFLENQLFNSGT 423
              ++   +    + +I   +   +       D         + ++  +F   Q F S  
Sbjct: 357 DDPTSLPLETQDDITQILSTIIRTSIDKESNPDLTPEAIEQKVVVSVAEFNGKQEFTSTN 416

Query: 424 VQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           +      +            V     L V  L +  + R    +  ++ E      +S P
Sbjct: 417 IPAIPWWVY-----------VIGGILLAVIILLIFMIVRSRKNNIEEELEYEEPVRISIP 465

Query: 484 PISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
            ++    +                                +     +L  M     E FA
Sbjct: 466 DVNEEKES-------------------------------ETTVRKKQLEKMARDKPEEFA 494

Query: 544 KILRKWARSE 553
           K+LR W   E
Sbjct: 495 KLLRTWMTEE 504


>gi|317129209|ref|YP_004095491.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522]
 gi|315474157|gb|ADU30760.1| flagellar M-ring protein FliF [Bacillus cellulosilyticus DSM 2522]
          Length = 532

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/566 (15%), Positives = 193/566 (34%), Gaps = 69/566 (12%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +      + +  +L + IL+ +++F+A  +F +  +Y  LY  L V +   I   L   
Sbjct: 13  IEFWQGRTKRQRGLLVTTILLILLVFLAFMWFGSRTNYVPLYSNLTVQETGEIKNTLDAR 72

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            +   +S +G+SI VP + V + ++ LAA+GLP+S     Y  F +   FG T     + 
Sbjct: 73  GVPSEVSSDGTSILVPEAQVNELKVSLAAEGLPNSG-RIDYSTFSENMGFGTTDNTFNLL 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSVYKS 187
              AL+  I   I++I G+  A+V I +P+   +         + ++             
Sbjct: 132 ERAALQTSIEDLIRNIDGVRNAQVMITLPEESVWLSDDREAATASVLLNLDHGYSLDQNQ 191

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK------SLSIVQAIQHEI 241
             A+ HLV+ ++PNL + ++ ++D   + L  ++    +            I + I+ ++
Sbjct: 192 VRALYHLVSRSIPNLPVENIVMMDQMSRYLELDDQTTTVDSSLTIYEQQRQIQRDIERDL 251

Query: 242 EMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQR 296
           +  + + L   +G D     V  +L+   +  +E +  P      S +  SI    +   
Sbjct: 252 QRQVQQMLGTMVGTDKVLVTVSTDLDFTQENRQEQLVTPVNEEDMSGIAVSIERITETYT 311

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
            +           +                 + +K EE+ N ++N          YK+  
Sbjct: 312 GQELADGGVAGTGETDIPGYPGVGNGGVG--DYEKMEERINNDVNRIQREIVESPYKIRD 369

Query: 357 LSIAVVVNKGRLTEVLGRS--ADQGKIDSYLAEINKIVSAATGIN-------SRRGDTIT 407
           ++I V++    L +        +Q ++++    + +IV  +                 I 
Sbjct: 370 IAIQVMLEPQVLEDATPEQLQQEQERVNAVQQMLGQIVRTSIDAEYTAQWEEEDIDSRIF 429

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           ++S  F            + F   +                                 + 
Sbjct: 430 VSSQQFFGKPDIPEPPSNIPFWYYIVGG-----------------------------LVL 460

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                 +       P      +       +N       +D   +              Q 
Sbjct: 461 LILILIILLFRKGKPSEELDMMEVVEQSGNNEIEPIKEKDTEGN--------------QR 506

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L  + +   E F+K++R W   +
Sbjct: 507 RKQLEKLAKDKPEEFSKLIRTWLSED 532


>gi|299066535|emb|CBJ37725.1| putative Flagellar M-ring protein FliF [Ralstonia solanacearum
           CMR15]
          Length = 506

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/422 (20%), Positives = 160/422 (37%), Gaps = 29/422 (6%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
                  L       L +  +   +      ++     Y  L+  L   D   +   L  
Sbjct: 8   IRDLWEGLSALARAGLVAGAICIAVAMGVFSYWALHTDYQVLFSDLTPQDSAAMVAELDR 67

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             + +++ D G+SI V    V K RI L  + LP   +  G ELF+  + FG+T F Q+I
Sbjct: 68  LKVPYQLGDQGTSILVARDQVYKTRIKLMGKDLPLHGA-VGLELFNNSD-FGMTEFAQKI 125

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKS 187
              RAL+GE+ RTI S+S I   RVH+ +P+ G F++ G+R  A+V +          + 
Sbjct: 126 NYQRALQGELTRTILSLSEIHDVRVHLALPEQGLFKQAGSRAKAAVTLTLKQGQVLRPEQ 185

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQAIQHEIEMN 244
              I+ LV+A+VP +   DVT++D  G  L   +  E E +     L + +  ++ ++  
Sbjct: 186 ITGIQRLVSASVPGIATQDVTIVDQHGVALTRASGAEGEIDATSGRLDLKKETENYLQRK 245

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +   L    G     ++V   L+MD  Q       P +            +  E+ +   
Sbjct: 246 VADVLERSFGPGQSIASVDVTLDMDRIQTTTEDVIPAASRTGHTPSGVVTRERESVRDNG 305

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
           A           D +V            + +++Y +  +          + R+ +  +  
Sbjct: 306 AP---------LDTRVADASGGARGGSSQRETDYAVGRRVEQVVSQPGSVRRIQVVAM-- 354

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
                                  + ++V+AA G +  RGD++ +  +  L  Q       
Sbjct: 355 -----------VRTPLDADQQERLRRLVAAAAGASFERGDSVVVQPLGALVTQGAVDAPA 403

Query: 425 QV 426
             
Sbjct: 404 DT 405


>gi|288553065|ref|YP_003425000.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4]
 gi|288544225|gb|ADC48108.1| flagellar MS-ring protein [Bacillus pseudofirmus OF4]
          Length = 524

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/566 (17%), Positives = 199/566 (35%), Gaps = 71/566 (12%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +  +  +   + +  I A   +   +L +      N  +   LY  L + +  +I   L
Sbjct: 10  QKVTEFWSGRTKKQKSIYAGAFIAVALLLILLLLLGNRSNNVPLYSNLTLQETGQIKETL 69

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I   ISDNG++I VP +MV   ++ LAA+G+P S S   Y  F     FG+T    
Sbjct: 70  DARGIPAEISDNGTTILVPEAMVDSLKVDLAAEGIPRSGS-IDYSFFQDQMGFGMTDNEF 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---AINPSV 184
            +     ++ E+   I++I+G+  A V I +P+   +         + ++          
Sbjct: 129 SVMERGLMQTELQDLIRNINGVNHANVMITLPEESVWLNTTQEAATASIVVDLAPGYQLD 188

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQH 239
               +A+ HLV+ +VPNL + ++ +++   +    +             +  +I + I+ 
Sbjct: 189 QNQVKALYHLVSKSVPNLPIENIVIMNQMFEDYFYDNDGNQSTTLSAFEQQRTIQREIER 248

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER-----SIRLSKDA 294
           ++ +N+ + L   +G D    +V  +++   +  +E + +P           SI    + 
Sbjct: 249 DLTLNLQRMLGTVVGQDKVLVSVTTDIDFTQENRQESLVEPVDPENIEGIAVSIERVTET 308

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
              E +         + +P+               ++ E++ N E+N  +       YK+
Sbjct: 309 YTGEGTPAGGVEGTGEGIPNFPGAVGQGES---EYERTEDRINNEVNRINRDIVESPYKI 365

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT-------GINSRRGDTIT 407
             L I V+V              Q ++D     +  IV  +           +   + I 
Sbjct: 366 RDLGIQVMVE----PPEGMDVLPQERLDDIQQILGTIVRTSISGVYADELTEAGINEKIY 421

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           ++S  F                        TVI   +++V  +LV  + L  +  +    
Sbjct: 422 VSSQPFEGKPDTTQAP-------------LTVIPVWMYVVAGVLVVIIILLIVLLMRKRK 468

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
             ++ E+  +   +  P      TG                                   
Sbjct: 469 QEEEEELVIQQQAAVVPDLPDEDTGESAT------------------------------K 498

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L  M +   E F+K+LR W   +
Sbjct: 499 RKQLERMAKEKPEEFSKLLRTWLSED 524


>gi|261407984|ref|YP_003244225.1| flagellar MS-ring protein [Paenibacillus sp. Y412MC10]
 gi|329929286|ref|ZP_08283039.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5]
 gi|261284447|gb|ACX66418.1| flagellar M-ring protein FliF [Paenibacillus sp. Y412MC10]
 gi|328936655|gb|EGG33098.1| flagellar M-ring protein FliF [Paenibacillus sp. HGF5]
          Length = 526

 Score =  247 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 97/566 (17%), Positives = 219/566 (38%), Gaps = 64/566 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            +++ Q++   ++    + ++L + +   ++  +      +   Y+  +  L  SD   I
Sbjct: 9   RERMTQYWNQFSN---KQKIMLIATVAFVLIALVVLTMQFSKTKYEVAFRDLNSSDAAGI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV-NSFGL 122
              L    I +++S++G SI VPS+   K +I + +QGL  +    G+E F+K  ++ G+
Sbjct: 66  ISHLETQGISYKLSEDGRSILVPSTSAAKVQIDVGSQGLVQNG-TIGFETFEKNASAIGM 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASVMIRAI 180
           T    E+  V AL GE+ R ++ + G+  A V + +P    F K     + +ASV+++  
Sbjct: 125 TDNEFEVKYVNALNGEVERLLEKMQGVQDATVLLNLPKESVFAKNGNEDQASASVVVQFK 184

Query: 181 NPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI----LGKSLSIV 234
                     +   +LV  A+PNL + ++T+ +   +LL   +  +      + ++ ++ 
Sbjct: 185 PGYRPNQEVIDGYYNLVKTAIPNLPIENITITNDEVELLATAKGGQGGLIGKVEENFALQ 244

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           +  ++++  N+ + L+ ++G +     V ++LN D  Q +E +  P        +E S++
Sbjct: 245 KKFENDVRQNVQQFLSQYMGSNKVNVLVASKLNFDQVQSKENIVTPVDEEEMKGIELSVQ 304

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             +       S       V +              +   +++  +  NYE+N  +     
Sbjct: 305 EIQKNYSGTGSPTGGVAGVGEEAVPGYPSDSGSGETN--SEELSKTVNYEVNRITKDIIA 362

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV--SAATGINSRRGDTIT 407
             Y ++ L+I V V      + L  +      +  +  +   +  S +T  ++     ++
Sbjct: 363 SPYTVKDLTINVSVEPPAGQQTLDDATRTAIQNILVNIVRASLSDSDSTYTDADLSKKVS 422

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + S  F  N   N  +V           F+  +   + +    L+       +RR     
Sbjct: 423 VISQVFNVNADENPKSV-----------FSQPVLWGIGIAALALIAGGTYFFIRRRRQQQ 471

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
           +  + ++    +   P I+    T                                  Q 
Sbjct: 472 EELEEDIQLPPVTEFPSINLESITNE-------------------------------SQV 500

Query: 528 DLRLLHMIEINEERFAKILRKWARSE 553
             +L  + +   + F  +LR W   E
Sbjct: 501 RKQLETLAKKKPDEFVNLLRTWLAEE 526


>gi|296531738|ref|ZP_06894564.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
 gi|296267937|gb|EFH13738.1| flagellar M-ring protein FliF [Roseomonas cervicalis ATCC 49957]
          Length = 472

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 194/370 (52%), Gaps = 9/370 (2%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109
            LY  LE ++  RIS  L E  I      +G +I VP   V + R+ LAA+GLP     +
Sbjct: 55  LLYAGLEPAEAGRISARLEELKIPVEARGDG-TILVPMDQVARLRMQLAAEGLPRQGG-A 112

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           GYEL D+ +   +TSFMQ + R+RALEGE+ARTI ++ G+ AARVHIV+P+  SF +   
Sbjct: 113 GYELLDQTSPMQMTSFMQRVQRLRALEGELARTIVTMQGVRAARVHIVLPERESFSRDAP 172

Query: 170 RPTASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
            PTASV +   A        A AIR LVA AVP L   DV+V+D  G +L A+       
Sbjct: 173 PPTASVTVTTSAGQRLGAAQAAAIRLLVAGAVPRLRQEDVSVMDGNGVVLAADGGMGAAA 232

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
           G+   I  A +H ++  +   L   +G    R+    E+       R   +DP  +VER 
Sbjct: 233 GRLGEIRVAQEHALQKAVLDLLEPLVGRGKVRAVASVEVEGARTVARAETFDPLGQVERG 292

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
            +L  + + SE  + ++ VTV QN+P+         RS+    +  E  N+EI++K   T
Sbjct: 293 RQLQTEQENSEDGRGQAPVTVGQNLPN-QQVNQNATRSVSAVQRNNETVNFEISSKVEET 351

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
             +   ++R+S+AVVV+             Q +  + L  +  +V +A G N +RGDT+T
Sbjct: 352 VREPGAVKRVSVAVVVDGIT----DAEGNVQPRPPAELERLAALVRSAVGYNQQRGDTVT 407

Query: 408 ITSMDFLENQ 417
           + ++ FL ++
Sbjct: 408 VDTLRFLPDE 417


>gi|299534787|ref|ZP_07048117.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1]
 gi|298729875|gb|EFI70420.1| flagellar MS-ring protein [Lysinibacillus fusiformis ZC1]
          Length = 531

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 82/562 (14%), Positives = 192/562 (34%), Gaps = 64/562 (11%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           +  TS  + + +++   ++  I L     FF +   Y  LY  L   ++ ++  AL    
Sbjct: 14  QFWTSRSKKQKIVMIGSVVGVIALAAIVTFFASKTTYVPLYKDLSTREIGQVKEALDSQG 73

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITR 131
           + ++I+  G+SI VP   V    + LA++G P + S   Y  F   + FG+T     + +
Sbjct: 74  VTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTGS-IDYS-FANSSGFGMTDNEFNLLK 131

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSVYKSA 188
             A E EIA+  +++ G+  A+V I +P+ G F         + ++           +  
Sbjct: 132 KAATETEIAKLFKNLEGVKDAKVMITVPEEGVFVTDVQGEATASIVLNTDPGYKFTEQQI 191

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIVQAIQHEIEM 243
             + +LV+ ++PNL   ++ + +   +       TA+          L + + ++ +++ 
Sbjct: 192 TTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATADGTSTTTAEGQLQMKKLVERDLQR 251

Query: 244 NINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSE 298
            +   L   +G D    +V  +++   +   E +  P        +  S +   +     
Sbjct: 252 QVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISAQRITEQYSGT 311

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
            +   +     +                 + ++ EE  N ++N          YK++ + 
Sbjct: 312 GAAAAAGTPEAETTTDNFTTYNEGAAGNGDYERTEETINNDVNRIRKDIQEAPYKIQDIG 371

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRRGDTITITSM 411
           I V+V     T+         +    +  ++ IV      +        +  + + ++  
Sbjct: 372 IQVIVEPPTATDAASLPDGVQEDIEKI--LSTIVRTTISKDVAAELTQEQIDEKVAVSVQ 429

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
                    +    +    +        +   + L   LL+ F  + + +R    ++   
Sbjct: 430 PLYGKATEVADEKPIIPWWVW-------VIGGILLAVILLLAFFIIRSRKRAKEEEELSI 482

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            E   + ++            +                                    +L
Sbjct: 483 LEEQEELMVDDINEEIETEATM---------------------------------RRKQL 509

Query: 532 LHMIEINEERFAKILRKWARSE 553
             M +   + FAK+LR W   +
Sbjct: 510 EKMAKEKPDDFAKLLRSWIAED 531


>gi|169827120|ref|YP_001697278.1| flagellar MS-ring protein [Lysinibacillus sphaericus C3-41]
 gi|168991608|gb|ACA39148.1| Flagellar M-ring protein [Lysinibacillus sphaericus C3-41]
          Length = 531

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 87/571 (15%), Positives = 195/571 (34%), Gaps = 67/571 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +   QF+K   S  + + +++   ++  I L     FF +   Y  LY  L   ++ +
Sbjct: 8   IKNDTSQFWK---SRSKKQKIVMIGSLVGVIALAAIVTFFASKTTYVPLYKDLSTREIGQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +  AL    + ++I+  G+SI VP   V    + LA++G P +     Y  F   + FG+
Sbjct: 65  VKEALDSQGVTYQIAPGGTSILVPEEQVDSLLVQLASEGYPQTG-TIDYS-FANSSGFGM 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR---KIGARPTASVMIRA 179
           T     + +  A E EIA+  +++ G+  A+V I +P+ G F    K  A  +  +    
Sbjct: 123 TDNEFNLLKKAATETEIAKLFRNLEGVKDAKVMITVPEEGVFVTDVKEDATASIVLNTDP 182

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKSLSIV 234
                 +    + +LV+ ++PNL   ++ + +   +       T +          L + 
Sbjct: 183 GYKFTEQQITTMYNLVSKSIPNLKTENIVISNQFSEYFDLNAATTDGASTTTAEGQLQMK 242

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIR 289
           + ++ +++  +   L   +G D    +V  +++   +   E +  P        +  S +
Sbjct: 243 KLVERDLQRQVQNMLGTLMGQDKVMVSVTTDIDFKKENREENLVTPVDEENMEGIAISAQ 302

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              +      +   +     +                 + ++ EE  N ++N        
Sbjct: 303 RITEQYSGTGAGAATGTPEAETTTDNFTTYNEGTSGNGDYERTEETINNDVNRIRKDIQE 362

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN-------SRR 402
             YK++ + I V+V     T+    S   G  +     ++ IV      +        + 
Sbjct: 363 APYKVQDIGIQVIVEPPTATDA--ASLPDGVREDIEKILSTIVRTTISKDVAAELTQEQI 420

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
            + + ++           +    +    +        +   + L   LL+ F  + + +R
Sbjct: 421 DEKVAVSVQPLYGKATQVADEKPIIPWWVW-------VIGGILLAVILLLAFFIIRSRKR 473

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
               ++    E     ++            +                             
Sbjct: 474 AQEEEELSILEEQEDLMIDDINEEIETEATM----------------------------- 504

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  +L  M +   + FAK+LR W   +
Sbjct: 505 ----RRKQLEKMAKDKPDDFAKLLRSWIAED 531


>gi|158320512|ref|YP_001513019.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs]
 gi|158140711|gb|ABW19023.1| flagellar M-ring protein FliF [Alkaliphilus oremlandii OhILAs]
          Length = 515

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 98/564 (17%), Positives = 205/564 (36%), Gaps = 64/564 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           +I     Q  +    + + + ++LAS  +  ++      ++ + P Y  LY  L      
Sbjct: 4   SINQIRNQLNEYFQGMDKKKKIMLASGTIFILLALTGIIYYFSRPEYVELYSNLRPEQTG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L+E NI  +       I VP     +A++ +A +GLPS+  +  +E     NSF 
Sbjct: 64  EIIERLTENNIKAKFGQTSGIILVPKEDQKRAQVVVATEGLPSAKFS--FEDVFSGNSFM 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF----RKIGARPTASVMI 177
           +TS  +    V AL+  +A  I+ I+G+ +A V +V+P+   F        A+ +  + +
Sbjct: 122 MTSEEKSKQYVYALQNYLASIIEEINGVKSANVALVVPENSGFILKNNNNLAKASVRLDL 181

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIV 234
           +        S   I  LV+ AV  L   +VT+  S G++L   +  + +      +L++ 
Sbjct: 182 QGNAILDKNSINGIAILVSNAVEGLSPENVTIHGSDGRVLNTDSDEDSDVFASNNNLALQ 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPD-----SKVERSIR 289
           Q+++ ++E +I   L+   G  N       +L+ D++      + P      + + RS++
Sbjct: 242 QSVKEKLEESITNFLSNVYGYGNIVVMANVKLDFDSEVTEIKEFAPPIEGETTGIPRSLQ 301

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
                  +  +          +      + V          +     NYEIN        
Sbjct: 302 ELSKESVNGGTGGAPGTPTNADDDTDPAQYVVGDEEYSTYSEASRTINYEINELYKKIVK 361

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
              +++ +++AV VN   L +                ++  I+SAA G++++    + + 
Sbjct: 362 AQGQVKDITVAVFVNSAALADGD-------LTAEQRTDLANIISAAAGLDTK---VVQVG 411

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
              F    +    ++  +    L           + ++   LV    L A  R  N + A
Sbjct: 412 VQQFNNGAMEPGDSLAGTSSSSLPLW-------AIGMIAVALVGITYLIASSRAKNKNKA 464

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +         +   I   ++                                   Q   
Sbjct: 465 MEPLEEMIIPETIAEIDLELSG---------------------------------SQVKQ 491

Query: 530 RLLHMIEINEERFAKILRKWARSE 553
           ++  ++    E  A++L+ W   +
Sbjct: 492 QIEKLVSKKPEAVAQLLKNWLNED 515


>gi|333004041|gb|EGK23575.1| flagellar M-ring protein domain protein [Shigella flexneri K-272]
 gi|333017814|gb|EGK37121.1| flagellar M-ring protein domain protein [Shigella flexneri K-227]
          Length = 261

 Score =  246 bits (627), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 5/263 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRS 260
           +  I+  I   L+  +G  N  +
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHA 261


>gi|333003033|gb|EGK22587.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6]
          Length = 261

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 5/263 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +  +
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 181 NPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PSRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRS 260
           +  I+  I   L+  +G  N  +
Sbjct: 239 EGRIQRRIEAILSPIVGNGNIHA 261


>gi|332756092|gb|EGJ86445.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70]
 gi|333003272|gb|EGK22818.1| flagellar M-ring protein domain protein [Shigella flexneri K-218]
          Length = 261

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 125/263 (47%), Gaps = 5/263 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 178

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 179 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 238

Query: 238 QHEIEMNINKALAAFLGVDNFRS 260
           +  I+  I   L+  +G  N  +
Sbjct: 239 EGRIQQRIEAILSPIVGNGNIHA 261


>gi|295706285|ref|YP_003599360.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319]
 gi|294803944|gb|ADF41010.1| flagellar M-ring protein FliF [Bacillus megaterium DSM 319]
          Length = 530

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/570 (17%), Positives = 213/570 (37%), Gaps = 68/570 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D++  F+ +     + + + L +  L  +++   A  F+N   +  LY  L   +  +I
Sbjct: 9   RDKMKVFWNNRK---KGQKIALIAAPLAAVLVISLASVFLNQDKFVPLYSNLSAQETGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L   ++   ISDNG++ISVP   V   ++ LAAQG+P S S   Y  F K  SFG+T
Sbjct: 66  KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI--RAI 180
                + ++ A++ E+A  +++I G+  A+V I +P+   +        +AS+++  +A 
Sbjct: 125 DNEFNVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK----SLSIVQA 236
                +  +++ HLV+ +VPNL   ++ +++   +       E N             + 
Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEAKKE 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291
           ++ +I+  + + L   +G D    +V A+L+   +   E + +P        +  S    
Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +    E +Q        +                 + +K EE+ NYE+N          
Sbjct: 305 NETFSGENAQDGGVAGTGEEDTTNYSSSTTSGDG--DYEKNEERINYEVNRIHKEIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR--------G 403
           YK++ L I V+++                       +  IV  +   ++           
Sbjct: 363 YKIQDLGIQVMIDPSNAKGK--LQVSDTLESDVQKMLGTIVRTSISKDANTKDLSDNAVS 420

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D IT++   F   +  ++    +             I     L+  +++  L +   R+ 
Sbjct: 421 DKITVSVQPFNGQETADNTASSIPLW--------MYITGGALLLIIVVLIVLLVRKRRQD 472

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
            + ++  +              + A++                                 
Sbjct: 473 LDEEEYNEEYDETFEAYEAAQKAPALSAE------------------------------- 501

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +Q+   L  + + + E FAK+LR W   +
Sbjct: 502 -QQTKTNLETLAKQDPEEFAKLLRTWISED 530


>gi|251797445|ref|YP_003012176.1| flagellar MS-ring protein [Paenibacillus sp. JDR-2]
 gi|247545071|gb|ACT02090.1| flagellar M-ring protein FliF [Paenibacillus sp. JDR-2]
          Length = 527

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/567 (17%), Positives = 206/567 (36%), Gaps = 54/567 (9%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I     +  +    +G+ + + L + I   ++  +   +      Y+  +  L+ +
Sbjct: 1   MNERIAQYRQRLTQFWGQMGKKQKIGLGASIGALLLTIVILTYIFTRTDYEVAFQNLDTT 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L    I +++S +G SISVPS++  + R+ + +QGL  + S  G+E F+  +
Sbjct: 61  DAAAIMTYLDGNGIPYKLSADGQSISVPSAVATRTRVDVGSQGLVQNGS-IGFEAFEGGS 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVM 176
           +FG T     +  + AL GE+ + +  + G+ +++V I +P    F   +   + +AS+M
Sbjct: 120 AFGQTENEFNVKYINALNGEVQQLLNRMQGVQSSKVLINLPKESVFLTPEEKEQASASIM 179

Query: 177 IRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER------NILG 228
           +             +   +LV  AVP L + D+T+    G+L+++           +   
Sbjct: 180 MNFTPGYRPSQQEVDGYYNLVKTAVPKLAVQDITISSPQGELVSSEIDGNKIGAATDAAE 239

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVER 286
               I +  + E++ NI + L+  LG DN   +V +  N D +  +E +  P  ++    
Sbjct: 240 SHFMIQRKYEAEVKKNIQQFLSPMLG-DNLVISVASSFNFDKKVTQENLVRPLENNNNNG 298

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
            I   +    + T+   +A  V                +  ++++    +NY+ +  +  
Sbjct: 299 IIVSEQQDNSTTTNGSANAGGVAGTGETDVPGYTATDNTNGSSEQSSRVTNYDYDRINNQ 358

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
                Y+L+ LSI++ V + +LT+   +           A++          ++     +
Sbjct: 359 IESAPYQLKDLSISIGVEQSKLTDQSRQELTNFLSSLVRAQLADSGQD-VNDDAMIAKKV 417

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           TI   +F       S +       I     A  +   +          L     ++    
Sbjct: 418 TILGQNFAATDAGTSSSGLSMQWAIGLGAAALALIGGL-------TVMLVRRRRKQAEEA 470

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
             A+   +         P     T                                   Q
Sbjct: 471 AAAEAAAMMETQAKPEFPTIDFETV------------------------------NNDSQ 500

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
           +   L  + +   E F  +LR W   E
Sbjct: 501 ARKNLETLAKRKPEEFVNLLRTWLVDE 527


>gi|325926946|ref|ZP_08188226.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas perforans 91-118]
 gi|325542683|gb|EGD14145.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein FliF [Xanthomonas perforans 91-118]
          Length = 687

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 145/329 (44%), Gaps = 6/329 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++  Q+F    SL  TR L + ++I + +   +A  F+   P Y +LY  L+       +
Sbjct: 15  EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAA 74

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L  A I ++I     +ISVP   +  AR+ LA  GL    +  G+EL +K   FG++ 
Sbjct: 75  DLLRTAQIPYKIDQATGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQ 134

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F++      ALE E++RTI ++  +  ARVH+ +P   +F +     +ASV++       
Sbjct: 135 FVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQG 194

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQAIQHE 240
                 +AI +LVA+++P++    VTV+D +G++L+  +   +          V+  +  
Sbjct: 195 LERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
               I + L    G          +++    +    +Y+ +    RS ++S     +  +
Sbjct: 255 YNQRIRELLEPMTGPGRVNPETSVDMDFSVVEEARELYNGEPAKLRSEQVS--DTSTSAT 312

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENT 329
            P+       N P           +LE T
Sbjct: 313 GPQGPPGATSNSPGQPPAAGNQALNLEET 341


>gi|296103640|ref|YP_003613786.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058099|gb|ADF62837.1| flagellar M-ring protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 302

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 141/284 (49%), Gaps = 5/284 (1%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           +   +     +SL  +  L+L       + + +A  F+   P Y  L+  +   +   I 
Sbjct: 11  NPAERIKSMLSSLRGSPKLLLVICGAAALSVIIALMFWAKEPDYRVLFSNISDEEGGAIV 70

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             LS+ N+ +RI   G  I VP+S V + R+ LA QGLP      G+EL D+   FG++ 
Sbjct: 71  AQLSQLNVPYRIDTPGGVIMVPASQVHEVRMKLAQQGLPKGGG-VGFELLDQE-KFGVSQ 128

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INP 182
           F +++   RALEGE+ARTI+++  I +A VH+  P    F +   +PTASV +       
Sbjct: 129 FTEQVNYQRALEGELARTIENLGPIQSACVHLATPKPSMFVREQKKPTASVTVNLLQGRT 188

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                  AI HL+++AV  L  G VT++D  G LLT + +        L     I+ + +
Sbjct: 189 LDDSQVVAITHLISSAVTGLAAGSVTIVDQRGNLLTQSGLRGLQTA-HLKYTSEIETDYQ 247

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
             I + LA  +G +N R+ V A+++   Q+  +  Y P+S  E+
Sbjct: 248 QRIQRILAPLVGDENIRAQVTAQIDFTEQEQTQEQYQPNSDPEK 291


>gi|56964034|ref|YP_175765.1| flagellar MS-ring protein [Bacillus clausii KSM-K16]
 gi|56910277|dbj|BAD64804.1| flagellar M-ring protein FliF [Bacillus clausii KSM-K16]
          Length = 527

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 107/569 (18%), Positives = 214/569 (37%), Gaps = 65/569 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +Q+  F+   ++L   R   + SV+L+ ++    A   +   +Y  LY +L +++  
Sbjct: 7   QFKNQVQTFWTESSTL---RKSAVISVVLLLLLAIALAAALLFRTNYAPLYSQLTLAEAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I  AL +  +  R+S++G++I VP + V + ++ LAA+GLP S S   Y  F     FG
Sbjct: 64  QIQEALEQRGVAARVSNDGTTIHVPEADVDRLKVDLAAEGLPKSGS-IDYAFFQNQMGFG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM---IR 178
           +T     +     ++ E+A  I+ + G+  A V I +P+   +   G   + + +   + 
Sbjct: 123 MTDNEFTVIERSLMQTELAELIRGVQGVEQANVIITLPEESVWLNSGQESSTAAVVLQLE 182

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235
                     +A+ HL++ +VPNL + ++ + DS     T  E E +          I Q
Sbjct: 183 PGYTLDSSQVKALYHLISKSVPNLPIENIVLSDSQFNNYTYQEEETSPAASFQSQREIKQ 242

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRL 290
            I+ +++  IN+ L+A +G +N   +V A+++   +Q  E + +P      S +  S+  
Sbjct: 243 EIESDLKQTINQLLSAVVGPENAIVSVTADIDFTQEQRTEDLVEPVDEEEVSGLAISVER 302

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +     T   E    V   +P+ +            +++ EE+ NYE+N         
Sbjct: 303 INEMYEGTTGNEEGVAGVGDEIPNYTGAAGGGDS---ESERTEERINYEVNRIHKEIIES 359

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN------SRRGD 404
            Y++  L I V+VN         ++    +     A +  I+      +         GD
Sbjct: 360 PYEIRDLGIQVMVN----PPEGMQALPPQQTADITAMLETIIRTTLPDDGEEEGEQDVGD 415

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            + +TSM F + +   +     + + +                                 
Sbjct: 416 RVVVTSMPFAQTETGEAEQPSSATIPVWIY------------------------------ 445

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                      G  +L               +     D + +                  
Sbjct: 446 -------AVAAGLVLLIIILAVLLYRKREPADLAEEQDEAAEPEPEQEDEPLMETEETEE 498

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
            +   +L  + +   E F+K+LR W   E
Sbjct: 499 SKQMRQLNRLAKEQPEDFSKLLRTWLSDE 527


>gi|308068652|ref|YP_003870257.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681]
 gi|305857931|gb|ADM69719.1| flagellar M-ring protein FliF [Paenibacillus polymyxa E681]
          Length = 527

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 93/576 (16%), Positives = 204/576 (35%), Gaps = 74/576 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +++ Q+         +  + + ++L S +   I+  +          Y+  +  L  +
Sbjct: 1   MNERIAQYRDKISGYWNNFSKKQKILLVSTLAFIIIAVVVLTMQFTKTEYEVAFRDLNAN 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   +   L  A I ++++  G+ ISVP++   KA++ + +QGL    S  G   FD+ +
Sbjct: 61  DAAGVIKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSS 119

Query: 119 S-FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175
           S  G+T     +    AL GEI + ++ + G+ +++  I MP    F   +   + +AS+
Sbjct: 120 SAIGMTENEFNVKYNNALNGEIQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASI 179

Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS- 230
            +             +   +LV  AVPNL + ++T+ +   +L+            G   
Sbjct: 180 QMEFEPGFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQE 239

Query: 231 -LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKV 284
            +++ +  + ++  N+ + L+  +G D     V+++LN D    +E +  P        +
Sbjct: 240 NMALQKKFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGI 299

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
           E S +  +++    + Q             V            ++DK     NYE+N  +
Sbjct: 300 EISAQQIQESYTGSSGQTGGVAGTGTQ--DVPGYPGGANSGNTSSDKSSSTINYEVNRIA 357

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG------- 397
                  Y ++ L+I V      +    G+        + +  I   +  A+        
Sbjct: 358 RDIIQSPYTVKDLTINV-----AVEPPTGQQTLDTATQTAIQNILVNIVRASLANSGTTI 412

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            ++     +++ S         N      +F    +     +  A++ L+    V FL +
Sbjct: 413 TDADLAKKVSVFSQAVPAPASTN------TFFSASNPWLWGIGAAVLALLAG--VIFLIV 464

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
              R+     D +   +                                          +
Sbjct: 465 RGRRKQEEELDEELQLMP---------------------------------TPTEFPSIT 491

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +     Q   +L  + +   + F  +LR W   E
Sbjct: 492 MESVTNESQVRKQLESLAKKKPDEFVNLLRTWLADE 527


>gi|304404244|ref|ZP_07385906.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9]
 gi|304347222|gb|EFM13054.1| flagellar M-ring protein FliF [Paenibacillus curdlanolyticus YK9]
          Length = 527

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/565 (16%), Positives = 202/565 (35%), Gaps = 61/565 (10%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D+L Q++   +  G+ + + L   +   I+  +   +  +   Y+  +  L+ +D   +
Sbjct: 9   RDRLSQWW---SQTGKKQKIWLGGTLGFLILAIILLTYIFSRTDYEIAFQNLDTTDSAAV 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS-FGL 122
              L  + I +++S +G SI VPS++  + +I + +QGL  + S  G++ F++ +S +G 
Sbjct: 66  MTYLDSSGIKYQLSSDGKSILVPSAVASRVKIDVGSQGLVRNGS-IGFDSFNQNSSQWGT 124

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPTASVMIRAIN 181
           T     +    AL GE+ + + ++ G+ +++V + +P    F  +      AS+ ++  N
Sbjct: 125 TDNEFNVKYRNALNGEVQQLLNNMQGVESSKVLVTLPQESVFADREEEHAIASITLKFTN 184

Query: 182 PSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI------LGKSLSI 233
                    +    LV  AVPNL + D+T+  + G+L+++               +   I
Sbjct: 185 GYRPSQKEVDGYFKLVKTAVPNLAIDDITIASTEGELVSSEAGGSPANGGTEVADQLFQI 244

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSI 288
            +  + E++ NI + L+  +G  N    + + LN D +   + + +P     +  V  S 
Sbjct: 245 QRKYETELKKNIQQYLSTMIGEGNVAVYIASSLNFDQKTSEQNLVEPIANNNNKGVVLSE 304

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           + +     +  S              V            + ++     NYEIN       
Sbjct: 305 QETSKTSTNTDSAVGGVPG--SGETDVPGYTAANGAGNSSNEETSSIRNYEINRIKNIVE 362

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
              + ++ L+I++ VN+  L                  ++ +        +S     +T+
Sbjct: 363 SSPFMIKDLNISIGVNRASLQGEAQTQITNYVKQILRTQLAQSGLD-VTSDSVVSQRVTV 421

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            + DF      +  +   +              A + +    L+    +  +R+     +
Sbjct: 422 MAQDFAAGGAGSESSKLSTAW-----------MAGIGIAALALIAGFAIGMMRKRKRNAE 470

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
               E    +        +                                +     Q  
Sbjct: 471 IAAAEAAAAADPVRVEFPTLDLD----------------------------SGANDHQVR 502

Query: 529 LRLLHMIEINEERFAKILRKWARSE 553
             L  + +   E F  +LR W   E
Sbjct: 503 KNLETLAKRKPEEFVNLLRTWLVDE 527


>gi|4378873|gb|AAD19741.1| flagellar M-Ring protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 555

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 101/536 (18%), Positives = 190/536 (35%), Gaps = 73/536 (13%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
             ++++ +  K        +  +    ++    +     F +++P   +LY      D  
Sbjct: 32  DRVNKVYERVKDFVQQPAIKRSLPLMGLISLTAIGALIWFLLSAPTQRDLYPGARDGDRA 91

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+ AL    I + I      I+V      KAR  LA QGLP S+ +  + +       G
Sbjct: 92  SIARALETGGIHYNIKRGNGVITVSEKEFYKARDLLAQQGLPKSAPDGVHVI--SSLPLG 149

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            +  ++      A E  +ARTI++I  +  ARVHI  P    F +     TASVM++   
Sbjct: 150 ASRAVEAKRLRAAREVVLARTIETIDVVNQARVHIAEPQPSPFVREQVHGTASVMLKLMT 209

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQ 238
                    +AI++LVAA+VP +    V+V+D  G LL+A    + +I  + L + Q ++
Sbjct: 210 GRNLSNAQVQAIQNLVAASVPGMAPEAVSVVDQAGHLLSATSNADNDINDRQLRLQQTVE 269

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
                 +NK L   LG +N+ + V  +L+    Q     Y  +  +          +   
Sbjct: 270 ARYMDALNKLLVPLLGENNYTAEVHTDLDFTESQATRESYPKEGSLR--SESGSWNKDGG 327

Query: 299 TSQPESAVTVEQNMPHVSDRKV-------------------------------------- 320
             Q         NMP                                             
Sbjct: 328 PDQNGGIPGAMSNMPPTPANPTQNPPPNLQPPAQPNNQQNAQNGQQGQNAQGQPNGQNAQ 387

Query: 321 -------------PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                           +  +    +     YE+  +     +    ++R+S+A+ + +  
Sbjct: 388 QGQNARAPGSVPAETAQQAQARTSENFNRYYELGREVSVIRNPTGSVKRVSVAIALRQIN 447

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
             +              +A++ K++  A G ++ RGD + I+S DF+   +F+    Q S
Sbjct: 448 HGKPP--------SPEQVAQLEKLIKGAIGFDASRGDVVAISSSDFMGGSVFSMPWYQNS 499

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPP 483
           ++ +L+R+       L  L+   LV F       +       ++            
Sbjct: 500 WVPLLARN-------LSALLVAALVIFGFARPFLKARAEAAERRRLAENPLPQLEQ 548


>gi|310641543|ref|YP_003946301.1| flagellar m-ring protein flif [Paenibacillus polymyxa SC2]
 gi|309246493|gb|ADO56060.1| Flagellar M-ring protein FliF [Paenibacillus polymyxa SC2]
          Length = 527

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/576 (16%), Positives = 205/576 (35%), Gaps = 74/576 (12%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +++ Q+         +  + + ++L S +   I+  +          Y+  +  L  +
Sbjct: 1   MNERIAQYRDKISGYWNNFSKKQKILLVSTLAFIIIAIVVLTMQFTKTEYEVAFQDLNAN 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   +   L  A I ++++  G+ ISVP++   KA++ + +QGL    S  G   FD+ +
Sbjct: 61  DAAGVIKYLDSAGIPYQLNAGGTQISVPTANADKAKVDVGSQGLIQKGS-IGMSAFDQSS 119

Query: 119 S-FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175
           S  G+T     +    AL GE+ + ++ + G+ +++  I MP    F   +   + +ASV
Sbjct: 120 SAIGMTENEFNVKYNNALNGEVQQLLERMDGVQSSKAVINMPKENIFAGLEEKDKASASV 179

Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKS- 230
            +             +   +LV  AVPNL + ++T+ +   +L+            G   
Sbjct: 180 QMEFEPGFTPNQQAIDGYFNLVKTAVPNLPVENITITNKEYELIPTAKGGQGGLTSGVQE 239

Query: 231 -LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKV 284
            +++ +  + ++  N+ + L+  +G D     V+++LN D    +E +  P        +
Sbjct: 240 NMALQKKFESDVRNNVQQFLSKIVGDDKVNVLVMSQLNFDKVTSKEQMVTPVDQTKMKGI 299

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
           E S +  +++    + Q             V            ++DK     NYE+N  +
Sbjct: 300 EISAQQIQESYTGSSGQTGGVAGTGTQ--DVPGYPGGANSGNTSSDKSSSTINYEVNRIA 357

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG------- 397
                  Y ++ L+I V      +    G+        + +  I   +  A+        
Sbjct: 358 RDIIQSPYTVKDLTINV-----AVEPPTGQQTLDTATQTAIQNILVNIVRASLANSGTTF 412

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
            ++     +++ S      Q   + T   +F    +     +  A++ L+    V F  +
Sbjct: 413 TDADLAKKVSVFS------QAAPAPTSTNTFFSASNPWMWGIGAAVLALLAG--VIFFIV 464

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
            + R      D +   +                                          +
Sbjct: 465 RSRRNQEEELDEELQLMP---------------------------------TPTEFPSIT 491

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             +     Q   +L  + +   + F  +LR W   E
Sbjct: 492 MESVTNESQVRKQLESLAKKKPDEFVNLLRTWLADE 527


>gi|328911724|gb|AEB63320.1| flagellar basal-body M-ring protein [Bacillus amyloliquefaciens
           LL3]
          Length = 510

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 188/551 (34%), Gaps = 63/551 (11%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84
           + S +   I+L +    F +S     LY  L   +  +I   L    +   ++D G+ I 
Sbjct: 1   MVSGLAAFIILLIVVIIFTSSEKMVPLYKDLSAEEAGQIKEELDTKKVSSELADGGTVIM 60

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           VP S V   ++ LAA+GLP + S   Y  F K   FGLT    ++ +V A + E++  I 
Sbjct: 61  VPESQVDSLKVQLAAEGLPKTGS-IDYSFFGKNAGFGLTDNEFDVLKVDATQTELSNLIN 119

Query: 145 SISGIVAARVHIVMPDMGSF-RKIGARPTASVMI--RAINPSVYKSAEAIRHLVAAAVPN 201
            + GI +++V I MP    F  +     +AS+++  +            + HLV+ +VPN
Sbjct: 120 EMDGIKSSKVMINMPKEAVFVGEDQPEASASIVLQIKPGYSLDQSQINGLYHLVSKSVPN 179

Query: 202 LDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           L   ++ ++D        ++       +       I   ++ +I+ ++   L   +G D 
Sbjct: 180 LKEDNIVIMDQNSTYYDKSDSGAGSVSDSYASQQGIKSQVEKDIQKHVQSLLGTMMGQDK 239

Query: 258 FRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
              +V A+++   ++  E + +P        +  S     +  + + +          N 
Sbjct: 240 VVVSVTADIDFTKEKRTEDIVEPVDKDNMEGIAISAEKVAETYKGDGAANGGTAGTGSN- 298

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
              +        +  + +K   + NYE+N          YK+  L I V+V         
Sbjct: 299 DTANYAAANGGSNSGDYEKSSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEPP---NPK 355

Query: 373 GRSADQGKIDSYLAEINKIVSAATG----------INSRRGDTITITSMDFLENQLFNSG 422
             ++   +  + + +I   V   +            N+   + I ++   F      N+ 
Sbjct: 356 NAASLTAQRQADIQKILGTVVRTSLDKNEAQNQKLTNNDINNKIVVSVQPFDGKVSTNTA 415

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
           +   S + I       V                                      + +  
Sbjct: 416 SANSSGLPIWVYITGGV------------------------------------LLAAIIL 439

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
             I          ++    +           ++    N         +L  M +   E F
Sbjct: 440 LIILLIRKKRSQEDEYEEYEYETPPEPVRLPDINEEQNETEETVRRKQLEKMAKEKPEDF 499

Query: 543 AKILRKWARSE 553
           AK+LR W   +
Sbjct: 500 AKLLRSWLDED 510


>gi|294500939|ref|YP_003564639.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551]
 gi|294350876|gb|ADE71205.1| flagellar M-ring protein FliF [Bacillus megaterium QM B1551]
          Length = 530

 Score =  240 bits (611), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 100/570 (17%), Positives = 212/570 (37%), Gaps = 68/570 (11%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
            D++  F+ +     +  ++      ++ I L   A  F+N   +  LY  L   +  +I
Sbjct: 9   RDKMKVFWNNRKKGQKIALIAAPLAAILVISL---ASVFLNQDKFVPLYSNLSAQETGQI 65

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L   ++   ISDNG++ISVP   V   ++ LAAQG+P S S   Y  F K  SFG+T
Sbjct: 66  KAELDARSVPSEISDNGTTISVPEQSVDSLKVDLAAQGIPDSGS-IDYSFFGKNASFGMT 124

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMI--RAI 180
               ++ ++ A++ E+A  +++I G+  A+V I +P+   +        +AS+++  +A 
Sbjct: 125 DNEFDVLKLDAMQTELANLMKNIQGVNDAKVMITLPNESVWANEKQGEASASIVLNTKAG 184

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----KSLSIVQA 236
                +  +++ HLV+ +VPNL   ++ +++   +       E N           + + 
Sbjct: 185 YKFDDQQIKSLYHLVSKSVPNLPTDNIVIMNQYFEYFDLKGNETNSASSSFASQNEVKKE 244

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291
           ++ +I+  + + L   +G D    +V A+L+   +   E + +P        +  S    
Sbjct: 245 VERDIQRQVQQMLGRLVGQDKVMVSVTADLDFTQENREEKLVEPVDKDNMQGIAVSAEKI 304

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +    + +Q        +                 + +K EE+ NYE+N          
Sbjct: 305 NETFSGKNAQDGGVAGAGEEDTTNYSSSTTSGDG--DYEKNEERINYEVNRIHKEIVESP 362

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR--------G 403
           YK++ L I V+++                       +  IV  +   ++           
Sbjct: 363 YKIQDLGIQVMIDPSNAKGK--SQVSDTLESDVQKMLGTIVRTSISKDANTKALSDNAVS 420

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D IT++   F   +  ++    +             I     L+  +++  L +   R+ 
Sbjct: 421 DKITVSVQPFNGQETADNTASSIPLW--------MYIIGGALLLIIVVLIVLLIRKRRQD 472

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
            + ++  +              +  ++                                 
Sbjct: 473 LDEEEYDEEYDETFEAYEAAQKAPVLSAE------------------------------- 501

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +Q+   L  + + + E FAK+LR W   +
Sbjct: 502 -QQTKSNLETLAKQDPEEFAKLLRTWISED 530


>gi|149184178|ref|ZP_01862496.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21]
 gi|148831498|gb|EDL49931.1| flagellar M-ring protein FliF [Erythrobacter sp. SD-21]
          Length = 517

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 100/547 (18%), Positives = 194/547 (35%), Gaps = 41/547 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
             +  +S  +    R        +  + L       ++      LY  L  ++   +   
Sbjct: 2   FGERLRSFAAQSAVRKAAPWFAGVAGMGLLALTWAALSPAPQRVLYSSLGDAERASVVTT 61

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +A I + I  +  +++V    V +AR+ +A+ G  S ++             G +  +
Sbjct: 62  LDKAGISYTIDSSTGALTVGEDDVYRARMLVASDG--SLAAPETGSDLIASLPMGASRTL 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSV 184
           +      A E E+  TI  I G+ A RVHI   +   F +    P+AS+M+R        
Sbjct: 120 EGDRLRAAQERELTMTIMEIVGVEAVRVHIAKAERSVFVREDVAPSASIMVRLARGRQLT 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
                AI +LVA +VP L +  V V+D  GKLLT            + +   ++ ++   
Sbjct: 180 DGQVVAITNLVAGSVPGLSIDAVKVVDQHGKLLTQARDPH---SGRIDLQAQMEAKLNSQ 236

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
           +++ L    G   F + V  EL+M+        YD D  V    R +    +S       
Sbjct: 237 VSQLLTPMFGAGAFTAQVQVELDMNEVTSARESYDKDGTV---RRETTQQSQSSDVTAGG 293

Query: 305 AVTVEQNMPHV-------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
              V  N P         +        +     +      YE+  + + +      ++ L
Sbjct: 294 IPGVLANTPPAEGEARQGAPNDTQQGNTAGGIGESSATRVYELGREVLVSNLSPGSVKYL 353

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S+AV +++  L +            + + ++ ++V+AA G    RGD +T+    F + +
Sbjct: 354 SVAVAIDQAALAKA---------SAADINKVKELVTAAVGAREDRGDKVTVVMRPFEKIE 404

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                  + S+  +  R+   ++  L+ L+  +      L  +               G 
Sbjct: 405 AEEVPFYETSWFAMAVRNGVAILAVLLVLLLAVRPAIKALRGM---------------GV 449

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
           S  +       V   +   D     S N++       L  R+       + L L  ++  
Sbjct: 450 SDKTAGSSGEGVALPIPTYDIEGTTSLNRETLDGQIELAQRVARENPDDAVLALRRLLAE 509

Query: 538 NEERFAK 544
           +    A 
Sbjct: 510 DARAGAS 516


>gi|116327841|ref|YP_797561.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330717|ref|YP_800435.1| flagellar MS-ring protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120585|gb|ABJ78628.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124406|gb|ABJ75677.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 566

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 115/586 (19%), Positives = 218/586 (37%), Gaps = 64/586 (10%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L    +  T+L  T+ LIL  V L  ++            +   L+  L   D   ++  
Sbjct: 9   LNNIREFFTTLDTTKKLILGGVALTVLVAIGILSTISLQKNRVVLFKDLTSKDFAEVTKK 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L      +  S + S I+V      +    LA + L  +    G+ELF  V+ F  T F 
Sbjct: 69  LDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFTETQFD 125

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN---PS 183
           ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I      
Sbjct: 126 KDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIPGVESL 185

Query: 184 VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI-----Q 238
             K  + I +LV+ AVP L   +V+V D+ GK+++  E +       L IVQ       +
Sbjct: 186 SRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKLRIGEE 245

Query: 239 HEIEM--NINKALAAFLG---------------------VDNFRSAVVAELNMDTQQIRE 275
             I+   ++   L   LG                      DN  S VVA  +       E
Sbjct: 246 QRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPNTPYSE 305

Query: 276 IVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
           +       ++ S + +K+  +     P+     E N+P                 K E  
Sbjct: 306 LKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIPP---GYKDTDYQKSEYSKSENI 362

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYLAEINK 390
           +NYE N +        +K+E+++++VV++     +                +  L +I K
Sbjct: 363 NNYEFNRRVSEVQKQPWKVEKVNLSVVIDGMWEKKEKEDGTGYDRKYIPVSEDELRQIRK 422

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
            + +A GI+  RGD I++ ++    +  F +   ++     + +    +I A + ++  L
Sbjct: 423 NLESAVGIDKARGDQISVITIPKDRSSQFAAEDEELRKQKAIRQ----MIIASLVIILLL 478

Query: 451 LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
           +V+ L   A+++        + E            +  V         ++LD        
Sbjct: 479 IVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDE------- 531

Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                         ++     +++     E  A++LR W   E   
Sbjct: 532 -----------KYRRELLENAINLAREKPEEVAQLLRTWLSEEEAS 566


>gi|255305272|ref|ZP_05349444.1| flagellar MS-ring protein [Clostridium difficile ATCC 43255]
          Length = 516

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 198/565 (35%), Gaps = 72/565 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+V D   
Sbjct: 9   IKEQVAKSRTKISSLKKGTKIALGIGVVAICLALVFTAISASKNKYAVLFSELDVQDAAD 68

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           IS  L    ID ++   GS+I VP + V K R+ LA      +  + G+ L D  +S GL
Sbjct: 69  ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180
           T    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V  M++  
Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKPG 183

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------------ANEMERNIL 227
                   +++  L++ +V N+   +V V+D+   LL+                     +
Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPINGGISV 243

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD KV   
Sbjct: 244 DKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
              SK++ +S T+  +            +             D  +E   YE       T
Sbjct: 303 ETRSKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +L RL+ +V ++                     A++  IV+ A G++  RGDT++
Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + SM F       +                                              
Sbjct: 402 VVSMVFDPEGKAEAKQELEEIKKEG------------------------------FKKNI 431

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                       +               + +   +       S  R     +        
Sbjct: 432 IKAVIGAVAVVAIGAIGYLIYKKRSEQEDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491

Query: 528 DLRLLHMIEINEERFAKILRKWARS 552
           +  +    E   ++  +I++ W   
Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|313650158|gb|EFS14571.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T]
 gi|332757276|gb|EGJ87613.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71]
 gi|332757502|gb|EGJ87837.1| flagellar M-ring protein domain protein [Shigella flexneri K-671]
 gi|332766674|gb|EGJ96878.1| hypothetical protein SF293071_2322 [Shigella flexneri 2930-71]
 gi|333017624|gb|EGK36936.1| flagellar M-ring protein domain protein [Shigella flexneri K-304]
          Length = 259

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 124/263 (47%), Gaps = 7/263 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVTGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R  LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELR--LAQQGLPKGGA-VGFELLDQE-KF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV +   
Sbjct: 117 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLL 176

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAI 237
                      AI HLV++AV  L  G+VT++D  G LLT +    R++    L     +
Sbjct: 177 PGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQSNTSGRDLNDAQLKYASDV 236

Query: 238 QHEIEMNINKALAAFLGVDNFRS 260
           +  I+  I   L+  +G  N  +
Sbjct: 237 EGRIQQRIEAILSPIVGNGNIHA 259


>gi|306820113|ref|ZP_07453761.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551891|gb|EFM39834.1| flagellar M-ring protein FliF [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 521

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/571 (16%), Positives = 221/571 (38%), Gaps = 68/571 (11%)

Query: 1   MAILDQLLQFFKSGTSL----GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M +L+ +     S  S      + +I+ +   I+V +++ ++   +     Y  LY  L+
Sbjct: 1   MYVLENINSVRNSINSYLEKYTKKQIITVGISIVVILIVMVSMIMYFTRTKYVTLYSNLD 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           ++ +++++ +L    + +++    +SISVP S   K  I LA Q +P++  +  +     
Sbjct: 61  LNTMSKVTQSLDSMGVQYKVDSQ-NSISVPESSRNKIMIDLAGQNIPNAKFD--FSNLIN 117

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG----SFRKIGARPT 172
           +NS  ++   +   +  AL  +I+  I+SI  +  A+V + +P       S  K   + +
Sbjct: 118 MNSMFMSDDEKNTAKQYALTNQISSIIESIPAVEKAQVTLAIPKNSEFVLSENKQQPKAS 177

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---LGK 229
             +++++ +     S   I  +VA +V  L+  +VT+    G++L  N   +N     G 
Sbjct: 178 VMLILKSGSQLSQDSINGIASMVAGSVEGLEPQNVTIHGPNGQILNQNSTGQNANMQTGT 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS-- 287
           +L + + ++ +IE ++   LA   G +NF   V  +LN D +  +   + P  + E S  
Sbjct: 238 NLEMQEKVKRDIENSLQNFLAPMFGYNNFSVMVSVKLNFDNETTQTKTFAPPVEGETSGL 297

Query: 288 -----IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
                 +  +   ++         +        ++          + ++ E   NYE+N 
Sbjct: 298 VRSEQQQKEQVENKNNALGTPGVTSNNNEAGGTTNYVTVDENGNSSYNRSESTVNYELNE 357

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRR 402
                      ++ ++++V++NK  L             D    +I  +++ ATG++++ 
Sbjct: 358 IVKNVEKARGTIDSVTVSVILNKDTLEG-------GELSDEKRTQIVNLITTATGLDTK- 409

Query: 403 GDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
              + + +  F +    ++                      + ++  + +  L +  LRR
Sbjct: 410 --AVEVFAESFNKTDELSA--------QNTQGSIPMWQWIAIAVIALIPLILLTVTMLRR 459

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
               +  ++ +    + +       A+  G+  +                          
Sbjct: 460 SKAKNKKEELKKLENNAIRQQEEIEAIEIGMKESGK------------------------ 495

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                   +  +I+ N E   ++L+ W   E
Sbjct: 496 -----KKSIEDLIQKNPEIVTQLLKTWIEEE 521


>gi|126697819|ref|YP_001086716.1| flagellar MS-ring protein [Clostridium difficile 630]
 gi|115249256|emb|CAJ67069.1| Flagellar M-ring protein FliF [Clostridium difficile]
          Length = 516

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 105/565 (18%), Positives = 197/565 (34%), Gaps = 72/565 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+  D   
Sbjct: 9   IKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDAQDAAD 68

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           IS  L    ID ++   GS+I VP + V K R+ LA      +  + G+ L D  +S GL
Sbjct: 69  ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180
           T    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V  M++  
Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKPG 183

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------------ANEMERNIL 227
                   +++  L++ +V N+   +V V+D+   LL+                     +
Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVDENNQPINSGISV 243

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD KV   
Sbjct: 244 DKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
              SK++ +S  +  +            +             D  +E   YE       T
Sbjct: 303 ETRSKNSSKSAANNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +L RL+ +V ++                     A++  IV+ A G++  RGDT++
Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + SM F       +                                              
Sbjct: 402 VVSMVFDPEGKKEAKQELEEIKKEG------------------------------FKKNI 431

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                 V     +               + +   +       S  R     +        
Sbjct: 432 IKAVIGVVAVIAVGAIGYLIYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491

Query: 528 DLRLLHMIEINEERFAKILRKWARS 552
           +  +    E   ++  +I++ W   
Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|157738171|ref|YP_001490855.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018]
 gi|157700025|gb|ABV68185.1| flagellar M-ring protein FliF [Arcobacter butzleri RM4018]
          Length = 574

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/577 (18%), Positives = 223/577 (38%), Gaps = 40/577 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLY---VKLEVSDVN 61
           + Q  K   +L +++ +IL S   +  ++ +    + +  +      Y     L  +DV 
Sbjct: 1   MDQLLKFINNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNYTIASNLTQADVM 60

Query: 62  RISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           R S  L  + I F +S +G+++++ +S   +  A+I L      +++ + G+E+F+K +S
Sbjct: 61  RASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFEK-SS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T+F  ++  +RALEGE++R+++S+SG++ A V I +P    F +  A  TAS +I  
Sbjct: 119 LGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASAVISL 178

Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQ 235
                   K  + I++ +A+AVP+L   ++ ++D  G LL  N  E N            
Sbjct: 179 KQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQNKYKD 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            I+ + E  I   L   +G     + V   L+   + + E +Y P+  +     +     
Sbjct: 239 KIEKDYEAKIISLLEPVVGTGRVVAKVNVALDFVKKDVEEEIYSPEGSIRSQQVIENTNN 298

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-L 354
                     V    N   V        +   N++     +NYEI+ K I+    NY  +
Sbjct: 299 TQGMLPNNGGVAGVDNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKDGNYTNI 358

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +R++ +V  +   L +             ++A +  +   A G +  RGDTIT+    F+
Sbjct: 359 KRITASVTFDSAILKD-------HPDKGEFIASLESLSGDAIGYDRGRGDTITVKDFKFV 411

Query: 415 ENQLFNSGTVQVSFM----------------DILSRHFATVINALVFLVGTLLVTFLGLH 458
             +  N     V                     +        + + +L+  +L+      
Sbjct: 412 GAKALNENGQLVDEFGNVINSGDGISVVGTMSTIKSILQDYKDYIQYLIVGILLFVFYKK 471

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +     +      +   ++                 +   A       + S   N    
Sbjct: 472 FIASSDIVILGDGNKKKLEADDDDIVKEMLTNYESEFDTATAQGRLKSKVKSQILNNIEG 531

Query: 519 INSYVSKQSDLRLLHM---IEINEERFAKILRKWARS 552
           ++   + + ++ +  +   I  +    A+++      
Sbjct: 532 LDEESAAKYEVFIEELDREINNSPAEMARMIELLLSE 568


>gi|296274027|ref|YP_003656658.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299]
 gi|296098201|gb|ADG94151.1| flagellar M-ring protein FliF [Arcobacter nitrofigilis DSM 7299]
          Length = 580

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 111/586 (18%), Positives = 232/586 (39%), Gaps = 44/586 (7%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLYV---KLEVSDVN 61
           + Q  K   +L   +  ++     + ++L +    + N  +      Y     L  + V 
Sbjct: 1   MDQLLKFVNNLNSAQRAVIIGGFSLLLVLLLGLLIYSNVKAEDSKLNYTIATNLTKNQVM 60

Query: 62  RISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
             S  L  + I F +  +G+S+++ +S   +  A+I L      ++S + G+E+F+K +S
Sbjct: 61  LASNELEASGILFSVVGSGNSLTLKTSKEFINIAKIKLVTSD-AATSKHVGWEIFEK-SS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T+F  ++  +RALEGE++R+++S+SGI+ A V + +P    F +    PTAS ++  
Sbjct: 119 LGTTNFENKVKYLRALEGELSRSLESLSGILRASVKLAIPKETIFTERKTPPTASAVLTL 178

Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL--TANEMERNILGKSLSIVQ 235
                   K  + I++ +A+A+PNL   ++ ++D  G +L  +  E +           +
Sbjct: 179 KPGVYLTQKQIDGIKNFIASAIPNLTTNNIKLIDQDGSILEQSKEEADNLSSVTQNKYKK 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            ++ + E  I   L  F+G     + V   LN   +  +E +Y+P+    RS + ++   
Sbjct: 239 RLEKDFESKIVDLLEPFVGKGRVVARVSLSLNFSKKHTQEEIYEPEGT-IRSQQTTESTS 297

Query: 296 RSET--SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI-ATTHDNY 352
            S+       +   V+ N+            S +N   K    NYEI+ + I     +  
Sbjct: 298 SSDGVVKDTAAVPGVQSNIQAPQPEGNKGTNSSKNETSKN-IVNYEISKRVIDHEDKNYS 356

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            + +++ AV  +   L        +    D ++  I ++V    G + +RGD IT+    
Sbjct: 357 TINKITAAVTFDSAAL-------TNVQNKDEFINNIVEVVQDTIGYDEKRGDKITVKDFK 409

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALV--------FLVGTLLVTFLGLHALRR-- 462
           F+      +     + +   S     ++ A++        +L+  +L+       + +  
Sbjct: 410 FVTYDNKANLDANGNPIVEDSGDTIGMVKAILAEFSEYFQYLIALILLFIFYRKFIVKND 469

Query: 463 --LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQ---- 516
             + +      G                VT      D   LDS+   + S  R+      
Sbjct: 470 VVILSDGLTSSGTGKAGGGKGKDINIPGVTDDTKLEDEFNLDSAKGRLKSKVRSQILNNL 529

Query: 517 ---SRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYT 559
                 ++   +     +  +I       AK++      +   +Y 
Sbjct: 530 EGLDEESAAKYEVLIEEIDRIINNEPAEMAKMIELLLSEDTGKKYN 575


>gi|326204626|ref|ZP_08194482.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782]
 gi|325985193|gb|EGD46033.1| flagellar M-ring protein FliF [Clostridium papyrosolvens DSM 2782]
          Length = 524

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 194/561 (34%), Gaps = 52/561 (9%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L  LL F+K      +TRI I+  +++V + + +        P Y  +       +V  
Sbjct: 8   LLKPLLDFWKGLDKSQKTRIFIITGIVVVSVSIGLFLI---TRPTYTTVINNASTEEVAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           +   L E  I ++++++ S I V      +A   LA  G   +     +           
Sbjct: 65  MQKILKEKGISYKLTEDKSGIIVNEKDSDEAHFELAT-GYSKNGLT--FADALSNIKINT 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG--ARPTASVMIRAI 180
           T   ++    +  E +IAR +     I  A V IV P+              ASV+I   
Sbjct: 122 TESDKKHIWQQLDESDIARQLMHFQNIENADVTIVRPEKTLLIDDNNSKDAKASVVITPK 181

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-TANEMERNILGKSLSIVQAIQH 239
           +    K AE+I  +VA++V  LD  +VTV+D+ G +L T +            + +  ++
Sbjct: 182 DEISAKQAESIVKIVASSVEGLDPKNVTVVDNKGNVLNTDSGDGIEKTSTQYDMKKKYKN 241

Query: 240 EIEMNINKALAAFLG-VDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERS-IRLSKDAQR 296
           ++E N+ + L   L   D  +  V   L+ DT         +P+     +     +  + 
Sbjct: 242 DLEKNVKEVLVGQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAITSRQETKEN 301

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK--L 354
            +         V  N P  +        S ++ +K +   N++ N  +  +     +   
Sbjct: 302 LKNGDTGGTPGVNSN-PGTTPSYPAGSDSSKSYNKSDVTENFQYNETNKQSEKSLGELIP 360

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           E+ S A+ +  G       +       D  + ++  + S ATGI       I ++ +   
Sbjct: 361 EKSSAAITLLYGNRVADDSK-----LNDEMITQVKNLTSRATGIPVEN---IAVSKLKIQ 412

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              +    T       I S     ++  +      + +                      
Sbjct: 413 PPVVEKPSTADTLKSLISSYGLLALLALMAIAFVIIAL---------------------- 450

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                  P      +      +D+ AL SS         +    I++    +   ++   
Sbjct: 451 -------PKKSKQKLEPAFAIDDDTALTSSKFAYSDMRPDPVPEIDTEERSEVKKQIDKF 503

Query: 535 IEINEERFAKILRKWARSEIE 555
           ++   +  A++LR W   + E
Sbjct: 504 VKQKPDAVAQLLRNWLTDDYE 524


>gi|254973912|ref|ZP_05270384.1| flagellar MS-ring protein [Clostridium difficile QCD-66c26]
 gi|255091298|ref|ZP_05320776.1| flagellar MS-ring protein [Clostridium difficile CIP 107932]
 gi|255312956|ref|ZP_05354539.1| flagellar MS-ring protein [Clostridium difficile QCD-76w55]
 gi|255515715|ref|ZP_05383391.1| flagellar MS-ring protein [Clostridium difficile QCD-97b34]
 gi|255648809|ref|ZP_05395711.1| flagellar MS-ring protein [Clostridium difficile QCD-37x79]
 gi|260682028|ref|YP_003213313.1| flagellar MS-ring protein [Clostridium difficile CD196]
 gi|260685626|ref|YP_003216759.1| flagellar MS-ring protein [Clostridium difficile R20291]
 gi|306518924|ref|ZP_07405271.1| flagellar MS-ring protein [Clostridium difficile QCD-32g58]
 gi|260208191|emb|CBA60528.1| flagellar M-ring protein [Clostridium difficile CD196]
 gi|260211642|emb|CBE01895.1| flagellar M-ring protein [Clostridium difficile R20291]
          Length = 516

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 107/565 (18%), Positives = 199/565 (35%), Gaps = 72/565 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+V D   
Sbjct: 9   IKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAAD 68

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           IS  L    ID ++   GS+I VP + V K R+ LA      +  + G+ L D  +S GL
Sbjct: 69  ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTGGSKGFALMDDSSSIGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180
           T    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V  M++  
Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAIPGSAAVYLMLKPG 183

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------ANEMERNIL------ 227
                   +++  L++ +V N+   +V V+D+   LL+         +            
Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDEDVDENNQPTNSLINV 243

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD KV   
Sbjct: 244 DKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
              SK++ +S T+  +            +             D  +E   YE       T
Sbjct: 303 ETRSKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +L RL+ +V ++                     A++  IV+ A G++  RGDT++
Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + SM F       +                                              
Sbjct: 402 VVSMVFDPEGKAEAKQELEEIKKEG------------------------------FKKNI 431

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                 V     +               + +   +       S  R     +        
Sbjct: 432 IKAVIGVVAVVAIGAIGYLIYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491

Query: 528 DLRLLHMIEINEERFAKILRKWARS 552
           +  +    E   ++  +I++ W   
Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|315186389|gb|EFU20149.1| flagellar M-ring protein FliF [Spirochaeta thermophila DSM 6578]
          Length = 569

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 102/597 (17%), Positives = 203/597 (34%), Gaps = 72/597 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LE 56
           M   + + L +   +       + +I  S+++V +   +       +P    L  K   +
Sbjct: 1   MNEWLKNVLERVKNAWGKWSLVQKIIFISIVVVLVGSLVFLASLSGAPSMVPLLNKAITD 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115
              +  I+  L E N+ ++++ + + I V      +  R  L  + L    ++  +ELFD
Sbjct: 61  PQVLEDITTRLEEENVPYQVTAD-NRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            +  + +T F + +   RA+   +   ++++  I  A V +V+P+   F +    P+AS+
Sbjct: 119 -IERWTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASI 177

Query: 176 MIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226
           +I     S   S     E I  LV  AV  LD   +T+ D  G +L   E         +
Sbjct: 178 IIVPKPGSDITSNRKKIEGIVKLVQFAVEGLDPDYITITDQRGVVLNDFEGMEQFDRLEL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             + L   Q +++E +  I  AL      D      +  EL+M   +++   + P     
Sbjct: 238 ARRQLKTKQELENEYKKRILSALGTVFRSDRVEIVNLDIELDMSDVEVKTEEHFPITMKP 297

Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
                          +  S  +  +        PE     E   P            +  
Sbjct: 298 DNPRTPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKDL---EGLVGK 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR------------SA 376
             +     N  +NT++I    D ++++R+S+AV ++     E   +              
Sbjct: 355 YSRNSLIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRT 414

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
                D  L +  +++  A G    RGD IT+  + F     F              R  
Sbjct: 415 YLPVSDEDLRKAEELIKGAVGYKRERGDLITVQHIQFDRTLQFAEEDAAF----RARRQL 470

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
              +   +  V  LLV F+    + R        K E   +   +    +          
Sbjct: 471 ERTVFYSLLGVAALLVAFIIFRLIAREMERRRRLKEEELARQHQAMREAALRSAEEEAAA 530

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++                  +      +   + ++M   + E  A+++R W   E
Sbjct: 531 VEMS------------------VEERARMELQEQAINMAREHPEEVAQLIRTWLMEE 569


>gi|255099415|ref|ZP_05328392.1| flagellar MS-ring protein [Clostridium difficile QCD-63q42]
          Length = 516

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 108/565 (19%), Positives = 200/565 (35%), Gaps = 72/565 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I +Q+ +     +SL +   + L   ++   +  +      +   Y  L+ +L+V D   
Sbjct: 9   IKEQVAKSRTKISSLKKGTKIALGIGVIAICLALVFTAISASKNKYAVLFSELDVQDAAD 68

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           IS  L    ID ++   GS+I VP + V K R+ LA      +S + G+ L D  +S GL
Sbjct: 69  ISAELESKKIDTKVK--GSTIYVPRTEVDKLRLELAPS---LTSGSKGFALMDDSSSIGL 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV--MIRAI 180
           T    +I + R ++GEI +TI+S   +   RVHI   +   F K     +A+V  M++  
Sbjct: 124 TDEEFQIKKQRMIQGEIEKTIKSFPQVEDTRVHITFGESSVFEKEAVPGSAAVYLMLKPG 183

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-------------ANEMERNIL 227
                   +++  L++ +V N+   +V V+D+   LL+                     +
Sbjct: 184 TTLEKNQIKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVNENNQPINSGISV 243

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERS 287
            K+ +  QA+  ++E +I + L    G    ++ V A+L+ DT +  EI  DPD KV   
Sbjct: 244 DKNKASEQALNKQLEKSILEILEPIFGKGKVKATVNADLSFDTAEKTEIKIDPD-KVAIK 302

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIAT 347
              SK++ +S T+  +            +             D  +E   YE       T
Sbjct: 303 ETRSKNSSKSATNNVQGV--------DANMNNQGNNNGTNTEDSLDESFEYETGKIETHT 354

Query: 348 THDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
                +L RL+ +V ++                     A++  IV+ A G++  RGDT++
Sbjct: 355 IVAPGELNRLTASVAIDGKIAKG-------------VQADVEDIVNNAIGMDGARGDTLS 401

Query: 408 ITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
           + SM F       +                                              
Sbjct: 402 VVSMVFDPEGKKEAKQELEEIKKEG------------------------------FKKNI 431

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
                 V     +               + +   +       S  R     +        
Sbjct: 432 IKAVIGVVAVVAIGAIGYLIYKKRSEREDMDYEDEDYISKSDSVDRKDNPLLGDDPELTL 491

Query: 528 DLRLLHMIEINEERFAKILRKWARS 552
           +  +    E   ++  +I++ W   
Sbjct: 492 EEAVKMYAEEKPDQVTEIIKTWLNE 516


>gi|327441055|dbj|BAK17420.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Solibacillus silvestris StLB046]
          Length = 531

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 90/557 (16%), Positives = 190/557 (34%), Gaps = 56/557 (10%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
              S  + +   L    +  I +  A  +F        L+ ++  ++V RI+  L+   +
Sbjct: 15  FWQSRTKNQKGALIGAFVAVIAIAAAITYFSTRTTMAQLFPEMSQAEVGRITEVLASQGV 74

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            + +++ G+ I VP + V   ++ LAAQG P S        F     FG+T     + + 
Sbjct: 75  KYEVTNGGTVILVPENQVQDLQVSLAAQGYPDSG-EIDTSFFTSNAGFGMTDNEFNVIKQ 133

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIR--AINPSVYKSAE 189
             +E ++A  ++   G+  A V I +P+ G F K       A++++     +       +
Sbjct: 134 ATIETDLANLVRKFEGVKDASVMITLPEEGVFLKDAKGEAQAAIVLDTAPGHKFSDDQIK 193

Query: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLT-----ANEMERNILGKSLSIVQAIQHEIEMN 244
            + +LV+ ++PNL   ++T+++   +          +   + +   + + + I+ +++  
Sbjct: 194 GLFNLVSMSIPNLPKENITIMNQYSEYYDLASAENGDGGIDSVTGQMEVKKTIERDLQRQ 253

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSET 299
           + + L   +G D     V A+++   +   E +  P        +E S +   +      
Sbjct: 254 VQQMLGTLIGPDKVVVNVSADIDFKKENREENLVRPVDEENMEGIEISAQRITETYSGGA 313

Query: 300 SQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
           +      T   ++       V       + ++ EE  N ++N          YK+  L I
Sbjct: 314 AGAAEGTTEAGSVTDNFVDYVEGTNGDGDYERVEETINNDVNRIRREIQESPYKIRNLGI 373

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV---SAATGINSRRGDTITITSMDFLEN 416
            V+V+     E   +             +   +   +A    +    + I ++   F  N
Sbjct: 374 QVMVDPPNTEEGFDQGVRTDIEQILSTIVRTSIDQEAAGNLTDEDIANRIVVSVQQFQGN 433

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                    V    +        +   + +V  +L+    L A RR              
Sbjct: 434 DTAEDQPQSVIPWWVW-------VIGGILVVAIILLVINFLRARRRK------------- 473

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
                               D   L    Q          S      +     +L  M +
Sbjct: 474 -------------------QDEEELGILEQQQQLIEIEDISEEKETEATVRRKQLEKMAK 514

Query: 537 INEERFAKILRKWARSE 553
              E FAK+LR W   +
Sbjct: 515 DKPEDFAKLLRSWIAED 531


>gi|323490142|ref|ZP_08095362.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2]
 gi|323396190|gb|EGA89016.1| flagellar MS-ring protein [Planococcus donghaensis MPA1U2]
          Length = 546

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/569 (17%), Positives = 205/569 (36%), Gaps = 55/569 (9%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +  +S TS        +     + +++     FF N  ++  LY  L  ++   I  A+
Sbjct: 10  SKMSESWTSFSPVTKWSVIGSFFLTLIILGVFVFFSNQSNFSVLYSDLTPAEAGEIKTAI 69

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
               I   +S +G +ISVP   +   ++ LAA+G+P +  N  Y  F +    G+T    
Sbjct: 70  EAQAIPVEVSSDGKTISVPEEHLANLKVSLAAEGIPKNG-NVNYGTFSENMGLGMTDRHF 128

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN---PSV 184
           ++    A++ E+A  I+ I G+  A V I +P    +     + + + ++   +      
Sbjct: 129 DVVERDAMQNELAYLIKQIDGVTEANVMITLPKENIWITDEEQTSTASIVVKGDSTLQLD 188

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAIQH 239
            K    + HL++ +VP+L    + ++D  G++    +  +         +   I + I+ 
Sbjct: 189 QKQINGLYHLISKSVPSLPADQIVIMDQNGQVFEVQDENQLDTNLSVYQQHREIQKGIEQ 248

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLSKDA 294
           +I+  + + L   LG D    +V+  ++   ++  E + +P     +  ++ S+    + 
Sbjct: 249 DIQRELQQMLGLLLGQDKVVVSVMTNIDFTKEKREEQLVEPVDVENNKGLDISVERIIET 308

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
             SE    E A    +              S   +++ EE+ N E+N  +       Y +
Sbjct: 309 YSSEGVVIEDAAGTGETEVANYPGVDGTGNS--ESERTEERINSEVNRINRQIEMSPYVI 366

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN----------SRRGD 404
           + ++I V V                     + +I+ ++  A   +              D
Sbjct: 367 DDITINVGVEPPIPDNP------ASLSQENITDISNLLKNAVSTSLSMNEVQATEIELED 420

Query: 405 TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLH 464
            I++ + +F           +V+F+  +  +   VI A + LV  ++V            
Sbjct: 421 RISVFATEFQGRPDIVEEEPEVTFLTGIPNNLLMVIGAAIVLVMIIVV------------ 468

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
                         +     +              AL  SNQ          S  +S  S
Sbjct: 469 ----------ALLLLRKKKKVDVEEEEYSFEGFEQALAKSNQVEIEEEEIDLSEFSSR-S 517

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSE 553
                 +  + +   E F K+LR W   +
Sbjct: 518 NPKRKTIEKLAKGRPEDFTKLLRSWMADD 546


>gi|24215291|ref|NP_712772.1| flagellar MS-ring protein [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196388|gb|AAN49790.1|AE011426_5 flagellar MS-ring protein [Leptospira interrogans serovar Lai str.
           56601]
          Length = 565

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 109/590 (18%), Positives = 215/590 (36%), Gaps = 65/590 (11%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +   L    +  T+L  T+ LIL  V L  ++            +   L+  L   D  
Sbjct: 4   QLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L      +  S + S I+V      +    LA + L  +    G+ELF  V+ F 
Sbjct: 64  EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I 
Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180

Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237
                  K  + I +LV+ AVP L   +V+V D+ GK+++  E +       L IVQ   
Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240

Query: 238 ----QHEIEM--NINKALAAFLG---------------------VDNFRSAVVAELNMDT 270
               +  I+   ++   L   LG                      DN  S VVA  +   
Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
               E+       ++ S + +K+  +     P+     E N+                  
Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPG---YKDTDYQKAEYS 357

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385
           K E  +NYE N +        +K+E+++++VV++     +                +  L
Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I K + +A GI+  RGD I++ ++    +  F S   ++     + +     +  ++ 
Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIILL 477

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           L+ ++LV       + R    ++    +       +   +  +     +           
Sbjct: 478 LIVSILVYRAIKKEIARRRLREEELAAQQQMMREAALRVMDESGAEVELS---------- 527

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                        ++    ++     +++     E  A++LR W   E  
Sbjct: 528 -------------LDEKYRRELLENAINLAREKPEEVAQLLRTWLSEEEA 564


>gi|307718598|ref|YP_003874130.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192]
 gi|306532323|gb|ADN01857.1| flagellar M-ring protein [Spirochaeta thermophila DSM 6192]
          Length = 569

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 103/597 (17%), Positives = 206/597 (34%), Gaps = 72/597 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LE 56
           M   + + L +   +       + +I  S+++V +   +       +P    L  K   +
Sbjct: 1   MNEWLKNVLERVKNAWGKWSLVQKIIFISIVMVLVGSLVFLASLSGAPSMVPLLNKAITD 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115
              +  I+  L E N+ ++++ + + I V      +  R  L  + L    ++  +ELFD
Sbjct: 61  PQVLEDITTRLEEENVPYQVTAD-NRILVSDEKTARRMRAILVREDLVPRGTDP-WELFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            +  + +T F + +   RA+   +   ++++  I  A V +V+P+   F +    P+AS+
Sbjct: 119 -IERWTITDFERNVNLRRAITRTVEEHLKALDDIDDASVTLVLPEKALFAEDQEPPSASI 177

Query: 176 MIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226
           +I     S   S     E I  LV  AV  LD  ++T+ D  G +L   E         +
Sbjct: 178 IIVPKPGSDITSNRKKIEGIVKLVQFAVEGLDPENITITDQRGVVLNDFEGMEQFDRLEL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             + L   Q +++E +  I  ALA     D      +  EL+M   +++   + P     
Sbjct: 238 ARRQLKTKQELENEYKKRILSALATVFRPDRVEIVNLDIELDMSDVEVKTEEHFPITMKP 297

Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
                          +  S  +  +        PE     E   P            +  
Sbjct: 298 DNPRTPYDESEVVPSITLSKEIQDEKFEGTGFNPEGPPGQEGQTPPAYKDL---EGLVGK 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR------------SA 376
             +     N  +NT++I    D ++++R+S+AV ++     E   +              
Sbjct: 355 YSRNSVIQNEVVNTRNITERKDPWEIKRISVAVALDGVWKWEYNEKGEVVFNPDGSIKRT 414

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
                D  + +  +++ AA G    RGD IT+  + F     F              R  
Sbjct: 415 YLPVSDEDIRKAEELIKAAVGYKRERGDLITVQHIQFDRTLQFAEEDAAF----RARRQL 470

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
              +   +  V  LLV F+    + R        K E   +   +    +          
Sbjct: 471 ERTVFYSLLGVAALLVAFIIFRLIAREMERRRRLKEEELARQHQAMREAALRSAEEEAAA 530

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             ++                  +      +   + ++M   + E  A+++R W   E
Sbjct: 531 VEMS------------------VEERARMELQEQAINMAREHPEEVAQLIRTWLMEE 569


>gi|310659045|ref|YP_003936766.1| flagellar m-ring protein flif [Clostridium sticklandii DSM 519]
 gi|308825823|emb|CBH21861.1| Flagellar M-ring protein FliF [Clostridium sticklandii]
          Length = 521

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 112/567 (19%), Positives = 216/567 (38%), Gaps = 60/567 (10%)

Query: 1   MAILDQLLQFFKSGT-SLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M   + +       +      + ++L  + +  +++  A  F+   P+Y  LY  +++  
Sbjct: 1   MDFFNDIKDKTGKLSEKYSNKQKIMLGGLAVGLVVITTAMIFYFTRPNYVTLYRDIDLKT 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
            + ++  L E  I +R++ + +SISVP + + KA++ LA  GLP ++ +  Y      NS
Sbjct: 61  ASEVTSQLDELKIPYRLNQD-NSISVPDTYINKAKVDLAGAGLPEATFD--YNDLINRNS 117

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMI 177
             ++   +   R  AL+ EIA  IQSI G+  A V++ +P    F  ++      ASV +
Sbjct: 118 MFMSDDEKNQARNYALQNEIANVIQSIPGVKKAFVNLSIPKTQEFILQENKIDAKASVFL 177

Query: 178 RAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLS 232
              +         + I  LVA +V  L   +VTV    G++L  +  + N   +   +L 
Sbjct: 178 NLDDKISLDQTSIQGITMLVANSVEGLKPENVTVHGPNGQVLNEDSTDTNNILVSQTNLE 237

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP------DSKVER 286
           +   ++ ++E ++N  LA   G  N       +LN DT   +   + P      D  V  
Sbjct: 238 LQNKVKLDVEKSLNNFLAPIYGYGNVSVMASVKLNFDTDNTQSKSFAPPIEGETDGLVRS 297

Query: 287 SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
                +  + S+ +     V        V    +       N DK E   NYE+N     
Sbjct: 298 LQENIEKVENSQEAVGNPGVDANAEEEVVDYATLDPNALNSNYDKNERIVNYELNEIVKT 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
                 ++E L++AVV+NK  L             +    EI  +++AATG+ ++   ++
Sbjct: 358 VEKAKGQIENLTVAVVLNKDSLEG-------GELTEEQRTEIASLINAATGLETK---SV 407

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
            I +  F ++       +Q +  D   +    +   + F V  L+        +      
Sbjct: 408 EIYAQSFNQD-------IQNALSDTAGQEGIPIWMWIAFAVIALIPILAIGIYMIMKRRK 460

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
           +  K+ E   +         +AV    +                                
Sbjct: 461 EKKKEAEKLLEIPQESAISKAAVEQIELE--------------------------IKESG 494

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
               +  +I+ N E   ++L+ W   +
Sbjct: 495 RKKSIESLIDTNPEIVTQLLKTWLDED 521


>gi|315636314|ref|ZP_07891564.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22]
 gi|315479403|gb|EFU70086.1| flagellar M-ring protein FliF [Arcobacter butzleri JV22]
          Length = 574

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 106/577 (18%), Positives = 222/577 (38%), Gaps = 40/577 (6%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVN--SPHYDNLY---VKLEVSDVN 61
           + Q  K   +L +++ +IL S   +  ++ +    + +  +      Y     L  +DV 
Sbjct: 1   MDQLLKFINNLNKSQRIILVSGFALLFIIVVGFLIYSSIKAEDKKLNYTIASNLTQADVM 60

Query: 62  RISVALSEANIDFRISDNGSSISVPSSM--VGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           R S  L  + I F +S +G+++++ +S   +  A+I L      +++ + G+E+F+K +S
Sbjct: 61  RASEELEASGIQFVVSGSGNNLTLKTSQEFINIAKIKLVTSE-AATNKHVGWEIFEK-SS 118

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G T+F  ++  +RALEGE++R+++S+SG++ A V I +P    F +  A  TAS +I  
Sbjct: 119 LGTTNFENKVKYLRALEGELSRSLESLSGVLKANVKIAIPKETIFTEKRADTTASAVISL 178

Query: 180 IN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI--LGKSLSIVQ 235
                   K  + I++ +A+AVP+L   ++ ++D  G LL  N  E N            
Sbjct: 179 KQGIHLTKKQIDGIKNFIASAVPDLKQENIQLIDQDGNLLEQNIDEENTIKSAAQNKYKD 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
            I+ + E  I   L   +      + V   L+   + + E +Y P+  +     +     
Sbjct: 239 KIEKDYEAKIISLLEPVVETGRVVAKVNVALDFVKKDVEEEIYSPEGSIRSQQVIENTNN 298

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK-L 354
                     V    N   V        +   N++     +NYEI+ K I+    NY  +
Sbjct: 299 TQGMLPNNGGVAGVDNNIQVPTTVGDGSKISSNSEGSNTVTNYEISRKVISQKDGNYTNI 358

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +R++ +V  +   L +             ++A +  +   A G +  RGDTIT+    F+
Sbjct: 359 KRITASVTFDSAVLKD-------HPDKGEFIASLESLSGDAIGYDRGRGDTITVKDFKFV 411

Query: 415 ENQLFNSGTVQVSFM----------------DILSRHFATVINALVFLVGTLLVTFLGLH 458
             +  N     V                     +        + + +L+  +L+      
Sbjct: 412 GAKALNENGQLVDEFGNVINSGDGISVVGTMSTIKSILQDYKDYIQYLIVGILLFVFYKK 471

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +     +      +   ++                 +   A       + S   N    
Sbjct: 472 FIASSDIVILGDGNKKKLEADDDDIVKEMLTNYESEFDTATAQGRLKSKVKSQILNNIEG 531

Query: 519 INSYVSKQSDLRLLHM---IEINEERFAKILRKWARS 552
           ++   + + ++ +  +   I  +    A+++      
Sbjct: 532 LDEESAAKYEVFIEELDREINNSPAEMARMIELLLSE 568


>gi|167465322|ref|ZP_02330411.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 425

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 184/419 (43%), Gaps = 20/419 (4%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + +++ Q++    +      +   + L +  +  I+      + ++   Y   +  L+ +
Sbjct: 1   MNEKIGQYWGRVKQYWNKYSKKTKITLIAAAVFMILTVGIISYNLSKTEYSTAFTNLQPN 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
               I   L +  I +++S +G SI VP++ V + +I + ++GL     N GY +FD+  
Sbjct: 61  AAADIKAYLDQEKIPYKLSADGKSIGVPTAQVAEVKIAVESKGLNK-GGNVGYGIFDQSG 119

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK-IGARPTASVMI 177
           SFG T    E+ ++ A++GE+ + I S   I  ++V I +P+ G F      + +ASV++
Sbjct: 120 SFGTTDNQFEMQKLNAMQGELQQLINSNQAIANSKVLINIPEQGVFLSKNEEKASASVVL 179

Query: 178 --RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL-----TANEMERNILGKS 230
             +          + I +LV+ +V NL + ++T+ D  G+ +       +      +   
Sbjct: 180 EVKQGYTLDQNQIDTIYNLVSHSVKNLPLDNITIADQFGQYMVPSKADGSPQGSTQVANQ 239

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSKVE 285
             + +  + +++ NI   LA   G +     VV+ +N D ++ +E +      D    +E
Sbjct: 240 FQVKKQFESDMQRNIVNLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLE 299

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
            S++  + +  S+ +          N   V   +         +++ ++  NYE+N  + 
Sbjct: 300 ISVQELQKSASSDGATAGGVAGSGTN--DVPGYESTSNSGNSKSEENQKTVNYEVNRITN 357

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD 404
                 Y ++ L+I V ++   +    G+  +   +++ +  I K   A +G+   + D
Sbjct: 358 DIIRAPYVVKDLNITVAIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD 416


>gi|45657269|ref|YP_001355.1| flagellar MS-ring protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600507|gb|AAS69992.1| FliF [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 566

 Score =  234 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 115/590 (19%), Positives = 218/590 (36%), Gaps = 64/590 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +   L    +  T+L  T+ LIL  V L  ++            +   L+  L   D  
Sbjct: 4   QLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            ++  L      +  S + S I+V      +    LA + L  +    G+ELF  V+ F 
Sbjct: 64  EVTKKLDSLGYQYG-SSDTSVITVDPEQRQEIVTKLAQENLIPAGVQ-GWELF-NVDKFT 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T F ++I + RAL+G I +++ ++  +  A V+I  P+   F    +   ASV++  I 
Sbjct: 121 ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP 180

Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI- 237
                  K  + I +LV+ AVP L   +V+V D+ GK+++  E +       L IVQ   
Sbjct: 181 GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL 240

Query: 238 ----QHEIEM--NINKALAAFLG---------------------VDNFRSAVVAELNMDT 270
               +  I+   ++   L   LG                      DN  S VVA  +   
Sbjct: 241 RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN 300

Query: 271 QQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
               E+       ++ S + +K+  +     P+     E N+                  
Sbjct: 301 TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPG---YKDTDYQKAEYS 357

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSA-----DQGKIDSYL 385
           K E  +NYE N +        +K+E+++++VV++     +                +  L
Sbjct: 358 KAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDEL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
            +I K + +A GI+  RGD I++ ++    +  F S   ++     + +    +I A + 
Sbjct: 418 RQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQ----MIIASLI 473

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           ++  L+V+ L   A+++        + E            +  V         ++LD   
Sbjct: 474 IILLLIVSILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDE-- 531

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                              ++     +++     E  A++LR W   E  
Sbjct: 532 ----------------KYRRELLENAINLAREKPEEVAQLLRTWLSEEEA 565


>gi|325273535|ref|ZP_08139767.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
 gi|324101328|gb|EGB98942.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
          Length = 424

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 160/442 (36%), Gaps = 57/442 (12%)

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTV 209
           ARVH+ +P    F +   +P+ASV++        +     AI +LVA +VP LD   VTV
Sbjct: 1   ARVHLAIPKSSVFVRDERKPSASVLVELYPGRALEPGQVMAIVNLVATSVPELDKSQVTV 60

Query: 210 LDSTGKLLTAN--EMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           +D  G LL+    +      GK     + ++  +   ++  L   LG D +++ V A+L+
Sbjct: 61  VDQKGNLLSEQIQDSALTQAGKQFDYSRRVESMLTQRVHNILQPVLGNDRYKAEVSADLD 120

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL- 326
               +     ++PD    RS +   + + S +  P+       N P  +           
Sbjct: 121 FSAVESTSEQFNPDQPALRSEQSVDEQRAS-SQGPQGVPGALSNQPPGAATAPQTTGGAA 179

Query: 327 ---------------------------------ENTDKKEEQSNYEINTKSIATTHDNYK 353
                                             +  +++   N+E++     T     +
Sbjct: 180 TPAAAIQPGQPLVDANGQQIMDPATGQPMLAPYPSDKRQQSTKNFELDRSISHTRQQQGR 239

Query: 354 LERLSIAVVVNKGR-LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           + RLS+AVVV+    +    G +         LA   ++V  A G ++ RGD++T+ ++ 
Sbjct: 240 MTRLSVAVVVDDQVKIDPATGDATRAPWGSEDLARFTRLVQDAVGFDASRGDSVTVINVP 299

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  ++      +           F  ++  ++ +V  L++ F  L  +         +  
Sbjct: 300 FAADRGEEIADIAF----YQQPWFWDIVKQVLGVVFILVLVFGVLRPVLNNITGGGKQAA 355

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                              G + ND ++L      +            S   +     + 
Sbjct: 356 -----PDSDMELGGMMGLDGELANDRVSLGGPTSILLPSP--------SEGYEAQLNAIK 402

Query: 533 HMIEINEERFAKILRKWARSEI 554
            ++  +  R A+++++W  ++ 
Sbjct: 403 GLVAEDPGRVAQVVKEWINADE 424


>gi|296282266|ref|ZP_06860264.1| flagellar M-ring protein FliF [Citromicrobium bathyomarinum JL354]
          Length = 526

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 193/561 (34%), Gaps = 57/561 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M     + Q  ++  +    +  +   V +  + +       +       LY  L+ +  
Sbjct: 6   MNGQGNMGQRARAFAAQPVVKKALPWFVGMAGLGIAALLWATLAPGPQRVLYSSLDDASR 65

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             +   L +A ID++I++N  ++SV  S + +AR+ +A+ G  S ++        +    
Sbjct: 66  ASVVATLDQAGIDYQINNNTGALSVSESDLYRARMVVASNG--SIAAPETGAQMIENLPL 123

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR-- 178
           G +  ++      A E E+  T+Q I G+ + RVHI   +   F +    P+AS+M+R  
Sbjct: 124 GASRTLEGDRLRAAQERELMLTVQEIDGVESVRVHIAKAERSVFVRENVAPSASIMVRMA 183

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                      AI +LVA +VP L    V V+D  GKLLT          + L +   ++
Sbjct: 184 PGRELADSQVSAIVNLVAGSVPGLSPDAVRVVDQHGKLLTDKREG--AGNERLDLQTQME 241

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            ++   +++ L+  +G D F S V  EL+M+        YD D       R +     + 
Sbjct: 242 AKLTAQVDQLLSPMIGADAFSSQVQVELDMNEVTSARESYDKDGA---IRRETTQQSSTS 298

Query: 299 TSQPESAVTVEQNMPHV-------SDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
            +          N P         + +  P     +          YE+  +   +    
Sbjct: 299 QAPAAGIPGATANTPPADPQLADRAPQDTPPADGAQTMGDTSASRTYELGREVSVSNLTP 358

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             L+R+S+AV ++K  +              + + +I ++VSAA G    RGD +T+   
Sbjct: 359 GALKRVSVAVAIDKNAMANA---------NAADIKKIEELVSAAVGAQDARGDKVTVMIR 409

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F E  +      +  +  ++ R+                                    
Sbjct: 410 PFTEAVVDKPAFYETGWFAMVVRN--------------------------------AVAL 437

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
             V    +L+  P    +       D    D+      +      S  +           
Sbjct: 438 LAVLLVLLLAVRPALKMLKGKGAKGDKAGADAGGAHDAAQIMLPASGFDREDLDAQIQLA 497

Query: 532 LHMIEINEERFAKILRKWARS 552
             +     +     LR+    
Sbjct: 498 QRIAREQPDDAVLALRRMLAE 518


>gi|289805827|ref|ZP_06536456.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 410

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 155/433 (35%), Gaps = 50/433 (11%)

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDV 207
            +ARVH+ MP    F +    P+ASV +              A+ HLV++AV  L  G+V
Sbjct: 1   KSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNV 60

Query: 208 TVLDSTGKLLTANE-MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266
           T++D +G LLT +    R++    L     ++  I+  I   L+  +G  N  + V A+L
Sbjct: 61  TLVDQSGHLLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQL 120

Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP---------- 313
           +   ++  E  Y P+    ++   S+    SE      P        N P          
Sbjct: 121 DFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIAT 180

Query: 314 -----------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                        +        +     ++ E SNYE++     T  +   +ERLS+AVV
Sbjct: 181 PPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVV 240

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           VN   L +              + +I  +   A G + +RGDT+ + +  F         
Sbjct: 241 VNYKTLADGK----PLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGE 296

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                           ++ A  +L+  ++   L   A+         +      ++ +  
Sbjct: 297 LP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR- 351

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                         +       ++D     R    R+ + V  Q   R+  M + +    
Sbjct: 352 -----------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVV 397

Query: 543 AKILRKWARSEIE 555
           A ++R+W  ++ E
Sbjct: 398 ALVIRQWMSNDHE 410


>gi|229826302|ref|ZP_04452371.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC
           49176]
 gi|229789172|gb|EEP25286.1| hypothetical protein GCWU000182_01674 [Abiotrophia defectiva ATCC
           49176]
          Length = 536

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 79/574 (13%), Positives = 175/574 (30%), Gaps = 59/574 (10%)

Query: 1   MA-ILDQLL----QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKL 55
           M   L++L     +F +        + +++ +V +   +  +   +FV  P    L    
Sbjct: 1   MNTFLERLRKIPARFLEFWNKYSPVQRILMIAVGVGVFLAIILVSYFVTRPVMTTLVKAE 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           + S+  +I   L +  I + +S +  +ISV       A + LA   +PS   +   ELF 
Sbjct: 61  KTSETAKIKDLLDDNGISYELSSDALTISVDQKDYSNALLVLAKNDIPSIGMSID-ELF- 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTAS 174
             N F  T   +++      +  + + + ++  I  A V I  P    +        + S
Sbjct: 119 -NNGFSTTESEKKLKANIYKQDWLRQVLLNMDNIENAVVSITSPTTGNTLFAETKDTSVS 177

Query: 175 VMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSL 231
           V++   +    ++A+ I +++A AV N     +T+ D +G LL          G      
Sbjct: 178 VILTVSSDFKQENAKTIANILAGAVGNDSTKAITIADQSGNLLFNGADNDVFSGGINSIS 237

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
              + +    +  I K L      D+ + A     +M+        Y P +  E+ ++  
Sbjct: 238 DYEKNVTGVKKEEIYKLLVGLPAYDDAKVAANFIFDMNKISSVYTEYTPPTGAEQGLKSH 297

Query: 292 KDAQRSETSQP-ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
             +  ++ S         + N       +         +  + +   Y  N K   T   
Sbjct: 298 DYSYEAQNSNANGGTPGTDANSETDYMVQSGGNAQGNVSINEND---YLPNKKVTNTEAA 354

Query: 351 NYKLERLSIAVVVNKGRLTEVLGR----------SADQGKIDSYLAEINKIVSAATGINS 400
              ++    ++ +                     +     + +  A     V        
Sbjct: 355 MGAIKPNESSIAITLISYVNYNETEMKKNGRLEGTTFDEFMFANQAATELTVPENVITLV 414

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
            R   +   ++  L  Q+      +       +         ++ ++   L+ F+    L
Sbjct: 415 SRATGVPEENIQILAWQMPIFQPEEGGGFFTFTNILM----IMLAVLIVALLIFVVFRGL 470

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
             +                              +      L        +        I 
Sbjct: 471 APV-----------------------------EVVELEPELSVEQLLATTKENQSLDDIE 501

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                ++   +   ++ N E  A++LR W   E 
Sbjct: 502 FSDKSETRKMIEKFVDENPEATAQLLRNWLSDEW 535


>gi|83646781|ref|YP_435216.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
 gi|83634824|gb|ABC30791.1| flagellar M-ring protein FliF [Hahella chejuensis KCTC 2396]
          Length = 462

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 158/402 (39%), Gaps = 34/402 (8%)

Query: 13  SGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI 72
             +     R +      L+ +   +A    + S +Y  LY  L+     +++  L+E  I
Sbjct: 4   FWSEWSGGRRVTFVLAALIVVGAGVALYMMLTSHNYQVLYKDLDTEQAAKLTEKLNELKI 63

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            +++   GS + V    +  A++ LA+ G   +    G+ELFD+ + +G+T F Q+I   
Sbjct: 64  PYQLGAQGSQVLVSQDDLYNAKLKLASSGYALNGG-VGFELFDEAD-YGMTEFAQKINYQ 121

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAINPSVYKSAEA 190
           RAL+GE+ARTI +   I  ARVH+V+P+   F+K     + + ++++             
Sbjct: 122 RALQGELARTIMAFDEIKFARVHLVLPESSLFKKDNKQPKASVTIVMEDGKYLSLDQING 181

Query: 191 IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKAL 249
           I++LVAA+V  L    VT+L+  G  LT  E          L    +++  ++  I   L
Sbjct: 182 IQNLVAASVEGLKPETVTLLNHKGVALTQVETGDQATVSAQLKGKSSMEAFLQQKIVVIL 241

Query: 250 AAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVE 309
                       V   LN    +       P                   +   + +   
Sbjct: 242 NQIFDEGTTAVRVDVALNHKRVERVRETLVPFG----------------DTDKGAVIKSS 285

Query: 310 QNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
            N  +    +    +         ++  Y    +    +    ++ER++++VV+      
Sbjct: 286 ANRQYELPDQDGRKKPSSVISSDVKEEEYAYGKQVETLSDAGGEVERITVSVVI------ 339

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
                          +  I  ++++A G++  RGD + + +M
Sbjct: 340 -------PANASGEQIEVIKSLIASAIGLDFERGDLVNVAAM 374


>gi|51894139|ref|YP_076830.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857828|dbj|BAD41986.1| flagellar basal-body M-ring protein [Symbiobacterium thermophilum
           IAM 14863]
          Length = 576

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 106/589 (17%), Positives = 221/589 (37%), Gaps = 61/589 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            ++ ++ Q +   +   R     L   +LV + L +A   ++N P ++  Y   + S+V+
Sbjct: 7   DVMGRVKQIWGGMSRPVRW----LTVGLLVALALSLAVAVYLNRPRWEVFYKASDPSEVS 62

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L E  +  R++ NG  I VP+     A +  A  GLPSS    G E+F +   FG
Sbjct: 63  TLVAHLDELGVPSRVTGNGLVIEVPARERSAANLAKAQAGLPSSGH-VGLEIFAQ-PQFG 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA-- 179
            T F +++   RA+EGE++R++  I+ I  A+V++ +P+   F +    P+A+V+++   
Sbjct: 121 ATEFDRQVNYKRAMEGELSRSLMRIADIEYAKVNLNVPEKSVFVRDEEPPSAAVLVQLRS 180

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN-ILGKSLSIVQAIQ 238
                  +  AI + VA++V  L    VTV+DS G+ L   + +   +  ++L+  +  +
Sbjct: 181 GRTLDADNVTAIINFVASSVEGLTPDRVTVIDSQGRELRPADDDAQRLDAEALAFQRQRE 240

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
            ++   + + L    G  N  ++V  EL+  + +  E +      V      S    +  
Sbjct: 241 EQLTQKLLQVLEPIFGRGNVAASVTVELDHQSSRTEERIVGQGVPVATVSERSGSQTQGT 300

Query: 299 TSQPESA----------VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
           +++P               V      +         S E+   + E   Y++  ++  T 
Sbjct: 301 STEPAPVSTQLPGQGETPGVTAPAVPIYQEPSVSTESGESYQSRTETR-YDVGERNQVTV 359

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
                ++R+S AV +N+                 S +  I +  ++ATG        +T+
Sbjct: 360 SPAGSVKRISAAVTINQ------------DTLTQSEIDLIRQHAASATGAQLS---DVTV 404

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +M F      ++               A  +   + +   LL+    L   R       
Sbjct: 405 LAMSFRPTAQADAAPPAPEAAAGSRLFDARALAIGLGIASFLLILAALLTRRRESEPEFA 464

Query: 469 AKKGEVGGKSILSPPPISSAVT------------------------TGLMPNDNIALDSS 504
                  G ++     +   +                         T +     +     
Sbjct: 465 LPGHPAVGTALDVALGLDQPLPVQQAAAAEAAPAAPEAPEAAPAEETDVQITGEMTAAEK 524

Query: 505 NQDIFSHSRNLQSRINSYV--SKQSDLRLLHMIEINEERFAKILRKWAR 551
            +++    R  +  I+            +  ++E   E  A+++R W +
Sbjct: 525 FEEVMKRRRPPRQPIDPEDFMDDDILADIDVLLEQAPEACAEVIRHWLK 573


>gi|315657517|ref|ZP_07910399.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315491989|gb|EFU81598.1| flagellar M-ring protein [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 538

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 105/555 (18%), Positives = 207/555 (37%), Gaps = 31/555 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I++ + +   +       +  +    + V I+  +    +V SP Y  LY  L   D   
Sbjct: 5   IVNAVDKVKNTVGQFSLGQKTLSIIGVAVLILGGVVLYSWVASPDYTTLYSGLTDKDQAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L    I ++++DNG  + VP+  V  AR+ LAA  LP +   SGY + D +     
Sbjct: 65  VTEQLDSQGIKYQVADNG-VVKVPAKDVQSARMSLAAADLP-AQPTSGYAVLDNL-GVAA 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           + F Q++ + RALEGE+A+TI ++  I  + V + +P    F         +  +     
Sbjct: 122 SDFQQQMAKKRALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPK 181

Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                   + +AI ++VAA+VPNLD   VTV+D+ G  L+                  ++
Sbjct: 182 NRKDVSNDTVQAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EME 235

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297
             +       +   +G  N R +   +L+ D Q     +Y DP+  V+     +   Q S
Sbjct: 236 KSLVDKALAVVEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYS 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   V    N+ +          +  N    +   N  +N +   +T       R 
Sbjct: 296 GGGAVVGGVLGPDNIGNP---YELNGNNGGNYTNTQNVQNNAVNEEVTQSTRAPGAALRK 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S++VV+N+     +             +A++  +V+AATGI++  GD + I+   F +  
Sbjct: 353 SVSVVLNQETARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTA 400

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +           +      +     + G +++  + + A+ +       ++    G+
Sbjct: 401 KKAAEKAAADEAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY--VSKQSDLRLLHMI 535
               P P + +           A     +         +   +      +     +  + 
Sbjct: 461 LDQLPDPYTLSAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELA 520

Query: 536 EINEERFAKILRKWA 550
               +  A+ LR W 
Sbjct: 521 LDKPQLVAEQLRAWM 535


>gi|23099010|ref|NP_692476.1| flagellar MS-ring protein [Oceanobacillus iheyensis HTE831]
 gi|22777238|dbj|BAC13511.1| flagellar basal-body M-ring protein [Oceanobacillus iheyensis
           HTE831]
          Length = 532

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 198/562 (35%), Gaps = 45/562 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +L           S  + +   +    L+ I+L     F   + +Y  LY  L   +  +
Sbjct: 5   LLKGKDSVSSFWASRSKVQKGSVIGGFLLIILLIGVITFASTNTNYVPLYNNLSTQEAGQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  L    + F + +  S+I+VP   V    + LA+ GLP++ S   Y  F +  S+G+
Sbjct: 65  ITTELESRGVPFELENGRSTITVPEEQVDTLLLDLASMGLPNNGS-IDYSFFSENTSWGI 123

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI---GARPTASVMIRA 179
           T     + ++ A++ E+A  I+S+ GI  A+V I +P+   F       A  +  +  + 
Sbjct: 124 TDNEFNVMKLDAMQTELANLIKSVEGIQDAQVMINVPEEPVFATDVTGEASASIVLNTQP 183

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQA 236
                    E + HLVA AVPNL   ++ +++   +     T     ++      ++ + 
Sbjct: 184 GYQFEGNQIEGLHHLVAKAVPNLPEENIVIMNQYFEYFDQNTQQTANQDTYTHQQTVKKE 243

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DSKVERSIRLS 291
           ++ +I+  + + L   +G +N   +V A+++   +  +E + +P        +  S+   
Sbjct: 244 VERDIQRRLQQMLGTMVGNENIVVSVTADIDFTQENRKEELVEPVDIENMEGLPVSLETI 303

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           +++   E +                             +  +E  NYE N          
Sbjct: 304 QESYVGEGAAEAGTNEEVGTGEGDVPGYNSGDNGDGEYELDKETINYEFNRIRRDIVESP 363

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           YKL  L I V VN  R  +       Q +  S    IN I+++    +            
Sbjct: 364 YKLRDLGIQVAVNNTRSVDNELEYLSQQEQTSVEEGINSILNSIITSSID---------- 413

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
                  +N   V      I+ + F             +      +              
Sbjct: 414 -----GEYNQDLVPDDKTSIVFQEFTETTTPSAEGTTGIPTWLYVV-------------- 454

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
               G  +L    +   +      +D +       +  +   +L  +  S  +     +L
Sbjct: 455 ---AGILLLIIIVLLFFLIRNRKTSDEVVDQYEEINEQTPIPDLPEKEESEAT-IRRKQL 510

Query: 532 LHMIEINEERFAKILRKWARSE 553
             + +   E FAK+LR W   +
Sbjct: 511 EKIAKEKPEDFAKLLRSWIGED 532


>gi|296125414|ref|YP_003632666.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563]
 gi|296017230|gb|ADG70467.1| flagellar M-ring protein FliF [Brachyspira murdochii DSM 12563]
          Length = 567

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 108/593 (18%), Positives = 215/593 (36%), Gaps = 71/593 (11%)

Query: 2   AILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSD 59
             +++L  Q     +     +  +L  V++V +   +A     +      L+ + L   D
Sbjct: 3   DFINKLTSQIRNIFSKTTTLQKAVLIGVLVVGLGAIIATIMLTSRKTGTLLFQQALTQED 62

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L   NI ++   NG       +   +A + L  +G   +  + G+ELFD    
Sbjct: 63  ARNVIAVLDANNIRYQYR-NGFITLNNQNDKARAELELVKEGRMPTGVD-GWELFD-APR 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G+T    +I + R+L   I + +  +  +  A V +  P       I +  TASV+I+A
Sbjct: 120 IGITDVELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKA 179

Query: 180 INP-----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGK 229
                      K+   ++ L+A  V  L    VT+ DSTG +LT    E       +  +
Sbjct: 180 QPFKEDVLRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQE 239

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--------- 280
            L IV   +  IE  I + L      +   + +  EL  D   I   +  P         
Sbjct: 240 ELKIVDRERKNIENKIRQTLGRIY-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPT 298

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                    +KV+ S R   +  + +   P+ A   E+N+P     K    ++     K 
Sbjct: 299 TPYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKSDRWQT---YTKT 355

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGRSA----------DQGK 380
           + Q NYE++ +  A    +Y++ ++S AV ++     + +V G                 
Sbjct: 356 DSQDNYELSKRYEAIKKGSYQIGKISAAVALDGRWTKVYDVNGDPVITNGNSYVREYHPV 415

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               +  +  +V AA G + +RGD +++T + F     FN+   ++    +  R     +
Sbjct: 416 TTEEIRNVTSLVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKL----MRDRFIKKTL 471

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
              +  +  L V  L + A+++        + E   +  +     +              
Sbjct: 472 IITMISLLILFVLALVIRAIQKELARRRRLREEELERKQMEMRRQAMM------------ 519

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    +     +  +     K+    ++ +     +  A++LR W   +
Sbjct: 520 -------NANEEPISEMSLEDAARKKLMDEVIRVSHERPDDVAQLLRTWMADD 565


>gi|171321207|ref|ZP_02910177.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
 gi|171093517|gb|EDT38687.1| flagellar M-ring protein FliF [Burkholderia ambifaria MEX-5]
          Length = 495

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 93/423 (21%), Positives = 167/423 (39%), Gaps = 35/423 (8%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +   + +      +  R R   LA  +   +     A +    P Y  L   L+  D   
Sbjct: 1   MKRSISRLGAYFLAGSRARQFALAGTLTAVVGCAGLAAWLALRPSYQILARDLKPQDAAA 60

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L +  I FR  ++ ++I VP++    AR+ L +  L      +G+ELF++ + FGL
Sbjct: 61  VAAQLDKEKIPFRYDESTAAILVPANDARAARVRLTSADL-RLQGVAGFELFNQSD-FGL 118

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAI 180
           T F Q++   RAL+GE+ARTI ++  I  ARVH+ +P+   FR+     + + ++ +R  
Sbjct: 119 TEFAQKVNYQRALQGELARTIATLDAIELARVHLSLPEASLFRRDRGRPKASVALFVRDG 178

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHE 240
           +       + I+ LVAAAVP +   DV+VL+ +G   +A+    ++     ++  A++  
Sbjct: 179 HALEPDVVKGIQRLVAAAVPEMSAADVSVLNQSGA--SADARGADVDDPKFALKNAVEQR 236

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
            E  I   +A   G      +V A L+ D  +                        +   
Sbjct: 237 YEHKILAQIAPIAGAGRATVSVDASLDFDQIRTTRE-------------SGLTQSAANPG 283

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
            P  A T        +    PLP +     + E   +                + +LS+ 
Sbjct: 284 NPPGAPTHSATAGWPNAGLPPLPGARTAPIEPETARS---ERSVEQIVRSPGAIRKLSVG 340

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFN 420
           +V++                       +  IVSA+ G +  RGDT+ I + D        
Sbjct: 341 IVLDD-------------TMTPERATRLRDIVSASIGFDPARGDTLAIYTPDAAPAPQNG 387

Query: 421 SGT 423
              
Sbjct: 388 QAA 390


>gi|298345990|ref|YP_003718677.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063]
 gi|304390252|ref|ZP_07372206.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298236051|gb|ADI67183.1| flagellar M-ring protein FliF [Mobiluncus curtisii ATCC 43063]
 gi|304326734|gb|EFL93978.1| flagellar M-ring protein FliF [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 538

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 103/555 (18%), Positives = 206/555 (37%), Gaps = 31/555 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I++ + +   +       +  +    + V I+  +    +V SP Y  LY  L   D   
Sbjct: 5   IVNAVDKVKNTVGQFSLGQKTLSIIGVAVLILGGVVLYSWVASPDYTTLYSGLTDKDQAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L    I ++++DNG  + VP+  V  AR+ LAA  LP +   SGY + D +     
Sbjct: 65  VTEQLDSQGIKYQVADNG-VVKVPAKDVQSARMSLAAADLP-AQPTSGYAVLDNL-GVAA 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           + F Q++ + RALEGE+A+TI ++  I  + V + +P    F         +  +     
Sbjct: 122 SDFQQQMAKKRALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPK 181

Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                   + +AI ++VAA+VPNLD   VTV+D+ G  L+                  ++
Sbjct: 182 NRKDVSNDTVQAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGAAAAS------EME 235

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDAQRS 297
             +       +   +G  N R +   +L+ D   +   +  DP+  V+     +   Q S
Sbjct: 236 KSLVDKALAVVEPLVGAGNARVSAQVDLSQDNQVKTTRVYTDPEGGVKPLSASNAAEQYS 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   V    N+ +          +  N    +   N  +N +   +T       R 
Sbjct: 296 GGGAVVGGVLGPDNIGNP---YELNGNNGGNYTNTQNVQNNAVNEEVTQSTRAPGAALRK 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           S++VV+N+     +             +A++  +V+AATGI++  GD + I+   F +  
Sbjct: 353 SVSVVLNQETARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFDDTA 400

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
              +           +      +     + G +++  + + A+ +       ++    G+
Sbjct: 401 KKAAEKAAADEAAAEAAAKTASLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY--VSKQSDLRLLHMI 535
               P P + +           A     +         +   +      +     +  + 
Sbjct: 461 LDQLPDPYTLSAPEEEALEIEAATIPEPEPEPEPEPEPEPEPDPILLKIEAKREEIAELA 520

Query: 536 EINEERFAKILRKWA 550
               +  A+ LR W 
Sbjct: 521 LDKPQLVAEQLRAWM 535


>gi|300871679|ref|YP_003786552.1| flagellar M-ring protein FliF [Brachyspira pilosicoli 95/1000]
 gi|300689380|gb|ADK32051.1| flagellar M-ring FliF protein, FliF [Brachyspira pilosicoli
           95/1000]
          Length = 562

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/593 (18%), Positives = 216/593 (36%), Gaps = 72/593 (12%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSD 59
           M  L  + Q         + +  IL  V++V +   +A  FF +      L+   L   D
Sbjct: 1   MNKL--IGQVKNIFAKTTKVQKAILIGVLVVALGAIVATVFFTSRRAGTLLFQNALTQED 58

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              +   L   NI ++   NG       +   KA + L  +G      + G+ELFD    
Sbjct: 59  ARNVIAVLDANNIKYQYR-NGFITLNNEADKAKAELELVKEGRMPMGVD-GWELFD-APR 115

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
            G+T    +I + R+L   I + +  +  +  A V +  P       + +  TASV+I+A
Sbjct: 116 IGITDAELDINKRRSLTKAITQLLTKLDFVQEATVDLAFPKKEYLTDVDSPVTASVVIKA 175

Query: 180 INP-----SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGK 229
                      K+   ++ L+A  V  L    VT+ DSTG +LT    E       +  +
Sbjct: 176 QPFKEEILRDPKTVRGLQQLIAMGVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQE 235

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--------- 280
            L IV   + +IE  I + L      +   + +  EL  D   I   +  P         
Sbjct: 236 ELKIVDRERKKIENKIRQTLGRIY-TNRVETTIALELIWDDISITNNLVLPIILKEDDPA 294

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                    +KV+ S R   +  + +   P+ A   E+N+P     K    ++     K 
Sbjct: 295 TPYDDSQFTNKVQVSSRTVTEDWKGQQFIPQGAAGAEENVPPGYKDKTDRWQT---YTKT 351

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGRS----------ADQGK 380
           + Q NYE++ +  A    +Y++ ++S AV ++     + +  G +               
Sbjct: 352 DSQDNYELSKRYEAIKKGSYQIGKISAAVALDGRWTKVYDANGNAIITNGSSYLREYHPV 411

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               +  +  +V AA G + +RGD +++T + F     FN+   ++    + +     V+
Sbjct: 412 TADEIKNVTALVQAAIGYDLKRGDQVSVTHIQFDHWDRFNAEDAKL----LRNNFIKRVL 467

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
              +  +  L +  L + ++++        + E   +  +     +              
Sbjct: 468 IISMIGLLALFILVLIIRSIQKELARRRRLREEELERKQMEMRRQAMM------------ 515

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    +     +  +     K+    ++ +     E  A++LR W   +
Sbjct: 516 -------NANEEPMSEINLEDAARKKLMEEVIRVSHERPEDVAQLLRTWMADD 561


>gi|218133660|ref|ZP_03462464.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991035|gb|EEC57041.1| hypothetical protein BACPEC_01529 [Bacteroides pectinophilus ATCC
           43243]
          Length = 542

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/573 (14%), Positives = 179/573 (31%), Gaps = 49/573 (8%)

Query: 1   MAILDQLLQ-FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M    Q+ Q            +  ++ S + V I+  +     VN P Y+ L      + 
Sbjct: 1   MDRFKQIGQKLLDVWNKYTVKQRAVIVSSVAVVIIALVILAVVVNRPQYETLTTCSSYAQ 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +  ++  L++ +I + ++DN   + V    +  A++ LA+  + S        L     S
Sbjct: 61  MQEVTNLLTDNSISYNVADNSMVVKVRKEDLTNAKMALASSNIQSDGYTIEDAL---SGS 117

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIR 178
           F  T   ++    + LE +    ++S  G+  A V + + +  + +       T  V+++
Sbjct: 118 FSTTENDKQKKWQKYLESKFKTDLESFDGVKEASVTVTLGEATNIYYSTKQEATVGVVLQ 177

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--------ERNILGKS 230
                  + A  +  L+A +V N    ++T++ + G  L +               L   
Sbjct: 178 LTKQIDDEVAAGMAQLLATSVGNKTTDNITIISTDGTTLFSKSDTDLSVSGTSTVGLNGR 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIR 289
           L     I+  I  ++ + + A    D     +  ++N D    I      PD   +    
Sbjct: 238 LKYQSQIESSITSHLRQGMLATGLYDEAYVQMNLDMNWDAVNTINTQYSAPDGMEQGLYS 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
            S +   S T+          N    S        +   ++   ++  Y  N     T  
Sbjct: 298 ESYEEASSGTNGAGGVPGTSSNSGDNSTTYYVSDGTNSTSEYSVKKYAYLPNVLVTTTDS 357

Query: 350 DNYKL--ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
              K+     S+ V   K  +             ++   +     + +      +     
Sbjct: 358 QPGKVIYNTSSMTVTFVKNVIYNEDECRKRGLLDNTTWDDFKAQNAQSVAAQVDQTWINA 417

Query: 408 ITSMDFLENQLFNSGTVQVSFM-----DILSRHFATVINALVFLVGTLLVTFLGLHALRR 462
           I++   ++ Q       Q  F      +   R++   +   + +V   L+ F+   + R 
Sbjct: 418 ISTGTGIDTQNITVLAYQKPFFVDSEGNAFVRNWTFWLQIALAVVILGLLAFVVFRSARP 477

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
           L   +   +  V      +                               +     I+  
Sbjct: 478 LTVEEKEPELSVEEMLRTT----------------------------KEQQEPLEDIDLQ 509

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
              +    +   ++ N E  A +LR W     +
Sbjct: 510 EKSEIRKAIEKFVDENPEAVALLLRNWLNDGWD 542


>gi|150388445|ref|YP_001318494.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
 gi|149948307|gb|ABR46835.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
          Length = 517

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 211/561 (37%), Gaps = 59/561 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +QL ++ +    L + + + +    L  ++      +F + P Y  LY  L   +  
Sbjct: 7   QIRNQLNEYIQ---GLDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L  +NI     D   +I V      +A++ +A QGLP++  +  YE     NS+ 
Sbjct: 64  SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG--SFRKIGARPTASVMIRA 179
           +TS  +    + A +  +A T++ I G+  A V++ +P+          A   ASV +  
Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181

Query: 180 INPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIV 234
            + +  +S   + I  LV+ AV  L+  +VT+    G++L      +         +++ 
Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292
           QA+Q ++E +I   L++  G  N        L  D+     + + P  + +    IR   
Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   +    P   +           + V     L   D+  +  NYEIN         + 
Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVKAHG 361

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           ++  +S+AV VNK  L +           D    E+  IVSAA G+++R    + +   +
Sbjct: 362 QVHDISVAVYVNKSTLADGD-------LSDQERRELINIVSAAAGLDTR---VVQVGVQE 411

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++    +   Q++    L+         L+ L+ TL++    +   +   N    ++ 
Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEEI 468

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            V    I       +   +G                                 Q   ++ 
Sbjct: 469 LVQDVMIPDELEEINLDLSG--------------------------------SQVKQQIE 496

Query: 533 HMIEINEERFAKILRKWARSE 553
            ++    +  A++L+ W   E
Sbjct: 497 KLVNKKPDAVAQMLKNWINEE 517


>gi|307699904|ref|ZP_07636955.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16]
 gi|307614942|gb|EFN94160.1| flagellar M-ring protein FliF [Mobiluncus mulieris FB024-16]
          Length = 536

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 210/553 (37%), Gaps = 29/553 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I++ L +   +       +  ++   + V ++  +    +V  P Y  L+  L   D   
Sbjct: 5   IVNTLDRVKDTVKEFTLAQKTLVIIGVAVLVLGGVVLYSWVGRPSYTVLFSGLTEKDQAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L    I ++++DNG  + VPS+ + +AR+ LAA  LP+    +GY + D +     
Sbjct: 65  VTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLPAE-PTTGYAVLDNL-GVAA 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           + F Q++ + RALEGE+A+TI S+  I  + V + +P    F         +  +     
Sbjct: 122 SDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPK 181

Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                   + +AI ++V+A++PNL  G V+V+D+ G  L+      +            +
Sbjct: 182 KGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETE 235

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297
             +       +   +GV N + +   EL  +T+Q    VY DP+  V++          S
Sbjct: 236 KSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYS 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
            +    + V    N+ +  + +          +  +  +N  +N +   TT         
Sbjct: 296 GSGAVVAGVLGPDNIGNPYELRNGNGG---KYENNQTVNNNAVNEELTNTTRSPGAAMSK 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +I+VV+N+     +             + ++   V+AATGIN+ RGD I ++   F +  
Sbjct: 353 TISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTA 400

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                           R   T +     + G +++  + + A+ +       ++    G+
Sbjct: 401 QKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
               P P +             A     +         +        +     +  +   
Sbjct: 461 LDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELALD 520

Query: 538 NEERFAKILRKWA 550
             +  A+ LR W 
Sbjct: 521 KPQLVAEQLRAWM 533


>gi|150390487|ref|YP_001320536.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
 gi|149950349|gb|ABR48877.1| flagellar M-ring protein FliF [Alkaliphilus metalliredigens QYMF]
          Length = 517

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 211/561 (37%), Gaps = 59/561 (10%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I +QL ++ +    L + + + +    L  ++      +F + P Y  LY  L   +  
Sbjct: 7   QIRNQLNEYVQ---GLDKNKKIKIGLSALFILISLTGIIYFFSRPDYVVLYNNLNPEESG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L  +NI     D   +I V      +A++ +A QGLP++  +  YE     NS+ 
Sbjct: 64  SVMETLQGSNIRADFGDTSGTILVRKQDEKRAQVVVATQGLPTARFS--YEDAFSGNSWM 121

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG--SFRKIGARPTASVMIRA 179
           +TS  +    + A +  +A T++ I G+  A V++ +P+          A   ASV +  
Sbjct: 122 MTSEERAQRILIAQQNYLASTMEEIPGVSKAVVNLTIPERTGFMMADNNANAKASVWLDI 181

Query: 180 INPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIV 234
            + +  +S   + I  LV+ AV  L+  +VT+    G++L      +         +++ 
Sbjct: 182 SSNANLESGSIKGIAILVSNAVQGLEPENVTIHGPDGRVLNQEAGSDSSLLGASDQMNLQ 241

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSK 292
           QA+Q ++E +I   L++  G  N        L  D+     + + P  + +    IR   
Sbjct: 242 QAVQKDLEKSITDFLSSVYGHGNVVVMAGVRLGFDSNVTELVEFAPPIEGQETGIIRSMH 301

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
           +   +    P   +           + V     L   D+  +  NYEIN         + 
Sbjct: 302 ELTHTAIDGPGGGIPGVDPNVGDIPQNVEDDEYLSRYDEASQTINYEINELRQKIVRAHG 361

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           ++  +S+AV VNK  L +           D    E+  IVSAA G+++R    + +   +
Sbjct: 362 QVHDISVAVYVNKSTLADGD-------LSDQERRELINIVSAAAGLDTR---VVQVGVQE 411

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F ++    +   Q++    L+         L+ L+ TL++    +   +   N    ++ 
Sbjct: 412 FNDS---LADQWQLAMDGNLAAGEGGQPWWLIGLLATLILGAAYIVINKVRKNRSQEEEI 468

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            V    I       +   +G                                 Q   ++ 
Sbjct: 469 LVQDVMIPDELEEINLDLSG--------------------------------SQVKQQIE 496

Query: 533 HMIEINEERFAKILRKWARSE 553
            ++    +  A++L+ W   E
Sbjct: 497 KLVNKKPDAVAQMLKNWINEE 517


>gi|332981431|ref|YP_004462872.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON]
 gi|332699109|gb|AEE96050.1| flagellar M-ring protein FliF [Mahella australiensis 50-1 BON]
          Length = 533

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/574 (18%), Positives = 221/574 (38%), Gaps = 71/574 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +  QL +F++  T   + RI+I A +I+  I +  A   +     Y  LY  L++ +  
Sbjct: 9   NMRKQLNEFWQGLTPSQKNRIIIAAVLIIAGIAVTGAI--WGRR-QYTVLYSGLDIKEAG 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I+  L E  + +R +  G++I VP     K R+ LA QG+P +  N  Y+LF + ++FG
Sbjct: 66  EITQKLDEMGVPWRTAAGGTAIEVPKGQDAKIRMQLATQGIPKTGGN--YDLFMQSSAFG 123

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RKIGARPTASVMIRA 179
            T + ++   +   +  +  +I +I G+  A V+I +P+  SF  +      TASV+++ 
Sbjct: 124 TTDYKEQKLYIFQQQERLQESIMTIQGVDQAVVNISVPEKDSFVLKNDVQPATASVLLKL 183

Query: 180 INPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQ 235
                 K      I+ LVA +V  L   +VTV+D    +L+    E +     + + + +
Sbjct: 184 SPGVEMKSAQVSGIQQLVAKSVIGLKSENVTVIDDKANILSVEQKEDDIRTADQQVDLEK 243

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSK 292
            +Q E++  + + L    G       V  +L+ D +    I + P   D  +  S++  K
Sbjct: 244 KVQDELQQKLLQLLEPIFGPKKVVVGVGVQLDFDKRSSESIQWQPVLDDEGIAVSMQTIK 303

Query: 293 DA-------------QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYE 339
           ++                  +  +    VE +  +  D      +     +K+E   NYE
Sbjct: 304 ESMINMPAGEVPGTANNGADTGGQGPPPVEDDTGNNPDGYPGTNQGNSEYNKEENTINYE 363

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
           +N           KL+ ++I+VVV+   +             +    ++  +V+ A GI+
Sbjct: 364 VNQLKQQVEEAQGKLKSMTISVVVDGENI------------SEQVRQQVQSVVAGAAGID 411

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
           ++    + + +M F                    +   ++ N ++ L+   +       A
Sbjct: 412 AQ---YVIVQAMPF-SVASLQEDINNALNASQQQKQADSMRNIILGLITAAVAGAAAFIA 467

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
           +R  +    A + E+    I     I                                  
Sbjct: 468 VRVANGRRGAVEPEMVEAGIPEGVSIEEIPMEPEDE------------------------ 503

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                 +   ++  +++   +  A++LR W   +
Sbjct: 504 ----HTKIKQQIEKLVDQKPDVVAQLLRTWLNED 533


>gi|257140593|ref|ZP_05588855.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 377

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 131/382 (34%), Gaps = 18/382 (4%)

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIE 242
                  AI  LV+++VP++   +VT++D  G LLT       +    L  VQ I+   +
Sbjct: 2   LDEGQVLAITRLVSSSVPDMPAKNVTIVDQDGNLLTQTASATGLDASQLKYVQQIERNTQ 61

Query: 243 MNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE---T 299
             I+  LA   G  N RS V A+++    +     Y P+   ++S   S+    S     
Sbjct: 62  KRIDAILAPIFGAGNARSQVSADVDFSKIEQTSESYAPNGTPQQSAIRSQQTSTSTELAQ 121

Query: 300 SQPESAVTVEQNMPHVSDR--------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
           S          N P             +   P +   +D+K+  +NYE++          
Sbjct: 122 SGTSGVPGALSNTPPQPASAPIVASNGQPAAPAATPVSDRKDSTTNYELDKTVRHVEQSM 181

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
             ++RLS+AVVVN    T+  GR   Q      LA++ ++V  A G + +RGD++ + + 
Sbjct: 182 GTIKRLSVAVVVNYQPSTDAKGRVTMQPLTADKLAQVQQLVKDAMGYDEKRGDSVNVVNS 241

Query: 412 DFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
            F       +        D++           V      L       ALRR         
Sbjct: 242 AFSAAADPFANLPWWRQPDMIELGKDIAKWLGVAAAAAALYFMFVRPALRRAFPPPAEPA 301

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
             V              + +          +     +   S            +++    
Sbjct: 302 AAVPALDGPDDALALDGLPSPDKKQLAEEDEEHPALLAFESEK-------NRYERNLDYA 354

Query: 532 LHMIEINEERFAKILRKWARSE 553
             +   + +  A +++ W   E
Sbjct: 355 RTIARQDPKIVATVVKNWVSDE 376


>gi|303240288|ref|ZP_07326807.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2]
 gi|302592198|gb|EFL61927.1| flagellar M-ring protein FliF [Acetivibrio cellulolyticus CD2]
          Length = 524

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/553 (15%), Positives = 174/553 (31%), Gaps = 43/553 (7%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
            +  +   +L +++   +  +  + ++    +   +    Y  L    +  D   I   L
Sbjct: 10  QRITELWKNLDKSQKGRIYVISAILVIAITVSIVMLTRTTYVPLVTIDDTKDAAEIEKVL 69

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
            +  I+++    G+ I V S    KA   LA+ G  SS  N  +E    + S   T   +
Sbjct: 70  QDKGINYK-PGEGNKILVDSKEKNKAEFALASSGFTSSGMN--FEDAWNLVSITSTESDK 126

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVY 185
           +       +  +   ++    +  A + + MP    F    +  + TA V I        
Sbjct: 127 KQLWENFKKNSLVAKLKMFDNVRDADIEVTMPKDSLFFDDTSSDKATAFVRIDPKGEITS 186

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI-LGKSLSIVQAIQHEIEMN 244
           +  + I  +V+A++  LD  DVTV+D+   +L+ +  +          +   ++ E+E N
Sbjct: 187 EQVKGIVSVVSASIDGLDPKDVTVVDNNFNILSTDASDAIGDTSTQYKMKLKVKQELEKN 246

Query: 245 INKALA-AFLGVDNFRSAVVAELNMDTQQIR-EIVYDPDSKVERSIRLSKDAQRSETSQP 302
           I           D     V   L  D Q+   + V  P+   E  +    + +       
Sbjct: 247 IKVLYPNKSSSYDYISVVVNPVLEFDKQKTTKKEVGKPNDIDEAVVSSHTEKEELVNGAN 306

Query: 303 ESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVV 362
                 + N  + +             +K     N + N            +     +V 
Sbjct: 307 GGVPGTDSNPGNGTTTYPIQAGDNSTYNKTTTDINRQFNETMTEVEKAQGDINFDQSSVA 366

Query: 363 VNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
           V    L      + D      +LA+  +++S AT         I ++ +   + +L    
Sbjct: 367 V---TLWYGQKVADDSAITPEFLAQCQQVISGAT--------NIPVSKISINKYKLAPEE 415

Query: 423 TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSP 482
                  D + ++                                      +G    + P
Sbjct: 416 VYTEPLSDKIQQYIEDYGYFA------------------------LMLMLIIGLLIAVIP 451

Query: 483 PPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
                A   G M +  +A  S  Q I          I+     +   ++   ++   E  
Sbjct: 452 RKKKEAAAVGEMLSPELATASGPQFIVPEDEEPVPEISYEEKSEVKKQIERFVKEKPESV 511

Query: 543 AKILRKWARSEIE 555
           A++LR W   + +
Sbjct: 512 AQLLRNWLSDDWD 524


>gi|239815256|ref|YP_002944166.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
 gi|239801833|gb|ACS18900.1| flagellar M-ring protein FliF [Variovorax paradoxus S110]
          Length = 502

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 187/524 (35%), Gaps = 46/524 (8%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
                 L +   + L   +L  ++   AA ++V    Y  L+  L+  D   ++  L   
Sbjct: 1   MNFWQGLTQRARIGLVGGVLAIVLAMSAAAWWVFHTEYQVLFADLKPQDAQAMTTELDRL 60

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
            I +R+ D+G+SI V  + V   RI L  + LP      G ELF+  + FG+T F Q+I 
Sbjct: 61  KIPYRLGDSGTSILVDKATVHATRIKLMGKELPLQG-TVGLELFNNTD-FGMTEFAQKIN 118

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188
             RAL+GE+ RTIQS++ +   RV + +P+ G F++  ++  AS+ +          +  
Sbjct: 119 YQRALQGELTRTIQSLAQVREVRVLLALPEQGLFKQATSKAKASITLTLRQGQTLRAEQV 178

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER---NILGKSLSIVQAIQHEIEMNI 245
             ++ LVAAAVP +   DVT++DS G  LT  E            L + +  +  +   +
Sbjct: 179 TGVQRLVAAAVPGMATQDVTIVDSHGVALTRAEGSSGELETSSARLDLKRDTEAYLSRKV 238

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
              L    G     ++V   LNMD  +       P +            +  ET +   A
Sbjct: 239 AAVLDRSFGAGQALASVDVMLNMDQIRTTTEDVLPAATRSGLQSTGVVVRERETLRDAGA 298

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
                                  +   +    Y +  +          + R+ +  VV K
Sbjct: 299 AL----------DARASDVGGPRSGSAQRDVEYAVGRRVEQVVSQQGSIRRIQVVAVVRK 348

Query: 366 GRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE---------- 415
                            +   ++ K+++AA G +  RGDTI + S+              
Sbjct: 349 -------------TLDAAQEDQLRKVIAAAAGASIERGDTIVVQSLAGSAMLAPDAAAGA 395

Query: 416 ------NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
                               + L +   T +  L+      ++    L A RR   + +A
Sbjct: 396 AAAAHAALTSEESDEAPVSSNSLDKASPTPVQWLLGGALITMLAVWLLRAGRRGVAVREA 455

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            +G            +         P  +    +      + +R
Sbjct: 456 SQGAASLSEAERAAALRRVRDWMREPMSSAPAGNPAAPGPTGAR 499


>gi|269976266|ref|ZP_06183262.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1]
 gi|269935595|gb|EEZ92133.1| flagellar M-ring protein FliF [Mobiluncus mulieris 28-1]
          Length = 536

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 208/553 (37%), Gaps = 29/553 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I++ L +   +       +  ++   + V ++  +    +V  P Y  L+  L   D   
Sbjct: 5   IVNTLDRVKDTVKEFTLAQKTLVIIGVAVLVLGGVVLYSWVGRPSYTVLFSGLTEKDQAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L    I ++++DNG  + VPS+ + +AR+ LAA  LP+    +GY + D +     
Sbjct: 65  VTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLPAE-PTTGYAVLDNL-GVAA 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--- 179
           + F Q++ + RALEGE+A+TI S+  I  + V + +P    F         +  +     
Sbjct: 122 SDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPK 181

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                   + +AI ++V+A++PNL  G V+V+D+ G  L+      +            +
Sbjct: 182 KGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETE 235

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297
             +       +   +GV N + +   EL  +T+Q    VY DP+  V++          S
Sbjct: 236 KSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYS 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   V    N+ +  + +          +  +  +N  +N +   TT         
Sbjct: 296 GGGAVVGGVLGPDNIGNPYELRNGNGG---KYENNQTVNNNAVNEELTNTTRSPGAAMSK 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +I+VV+N+     +             + ++   V+AATGIN+ RGD I ++   F +  
Sbjct: 353 TISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTA 400

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                           R   T +     + G +++  + + A+ +       ++    G+
Sbjct: 401 QKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
               P P +             A     +         +        +     +  +   
Sbjct: 461 LDQLPDPYTLTPPEEEALAIESAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELALD 520

Query: 538 NEERFAKILRKWA 550
             +  A+ LR W 
Sbjct: 521 KPQLVAEQLRAWM 533


>gi|227876739|ref|ZP_03994848.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243]
 gi|306817686|ref|ZP_07451428.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239]
 gi|227842636|gb|EEJ52836.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35243]
 gi|304649500|gb|EFM46783.1| flagellar M-ring protein FliF [Mobiluncus mulieris ATCC 35239]
          Length = 536

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 208/553 (37%), Gaps = 29/553 (5%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I++ L +   +       +  ++   + V ++  +    +V  P Y  L+  L   D   
Sbjct: 5   IVNTLDRVKDTVKEFTLAQKTLVIIGVAVLVLGGVVLYSWVGRPSYTVLFSGLTEKDQAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L    I ++++DNG  + VPS+ + +AR+ LAA  LP+    +GY + D +     
Sbjct: 65  VTQQLDATGIKYQVADNG-IVKVPSNDIQRARMDLAANNLPAE-PTTGYAVLDNL-GVAA 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           + F Q++ + RALEGE+A+TI S+  I  + V + +P    F         +  +     
Sbjct: 122 SDFQQQMAKKRALEGELAKTINSMDVIEKSSVALAIPAETVFADPKKPVATTASVTVEPK 181

Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                   + +AI ++V+A++PNL  G V+V+D+ G  L+      +            +
Sbjct: 182 KGREVDNNTVQAIVNMVSASIPNLAKGGVSVVDTAGNTLSDKVSAGSAAAT------ETE 235

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297
             +       +   +GV N + +   EL  +T+Q    VY DP+  V++          S
Sbjct: 236 KSLVAKALAMVEPLVGVGNAKVSAHVELAQETEQKTTRVYTDPEGGVKQLSSSKASENYS 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   V    N+ +  + +          +  +  +N  +N +   TT         
Sbjct: 296 GGGAVVGGVLGPDNIGNPYELRNGNGG---KYENNQTVNNNAVNEELTNTTRSPGAAMSK 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQ 417
           +I+VV+N+     +             + ++   V+AATGIN+ RGD I ++   F +  
Sbjct: 353 TISVVLNQETARRLD------------MTQVRDSVAAATGINAARGDVINVSRAPFDDTA 400

Query: 418 LFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGK 477
                           R   T +     + G +++  + + A+ +       ++    G+
Sbjct: 401 QKAREKAAEEAAAAAERAKTTTLIRQAVIAGLIILLLIIIAAVAKKRAKAREREALDLGE 460

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
               P P +             A     +         +        +     +  +   
Sbjct: 461 LDQLPDPYTLTPPEEEALAIEAAEVPEPEPEPEEEPEPELDPIMLKLEAKREEIAELALD 520

Query: 538 NEERFAKILRKWA 550
             +  A+ LR W 
Sbjct: 521 KPQLVAEQLRAWM 533


>gi|85710179|ref|ZP_01041244.1| flagellar M-Ring protein [Erythrobacter sp. NAP1]
 gi|85688889|gb|EAQ28893.1| flagellar M-Ring protein [Erythrobacter sp. NAP1]
          Length = 547

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 196/551 (35%), Gaps = 60/551 (10%)

Query: 12  KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEAN 71
           ++  +    +  + A V L+ +++  A  F +       LY  L   +  ++  AL    
Sbjct: 32  RAFMAQPAFQRALAALVGLIAVVVAGALYFAIAQGPQRILYSDLSDVERAKVVQALETGG 91

Query: 72  IDFRISDNGSSISVPSSMVGKARIHLAAQ-GLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           I + I ++  +I+V  + + +AR+ +A+  GL   ++  G          G +  ++   
Sbjct: 92  IGYAIDNSTGAITVAETDLYRARMLVASDTGL---AAPEGASAMLDAIPLGSSRTLEGER 148

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSA 188
              A E E+  TI+ I GI + RVH+  P+  +F +    P+ASVM+R            
Sbjct: 149 LRLARERELMLTIREIDGIESVRVHLATPERSAFVRENNPPSASVMVRLVSGRSLGRSQV 208

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           EAI +LV+ +VP L    V V+D  G+LL+A   E       L + +  + ++   +   
Sbjct: 209 EAIVNLVSGSVPGLTPDKVRVVDQNGRLLSAAREEALGG---LVLQREFEAKLREQLGTL 265

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           LA  LG  NF S V  E  ++ ++        D +        + A R           V
Sbjct: 266 LAPLLGEGNFSSQVQVE--LEQEESTSARESYDREGVIRSESERSATRMAGGAVGGIPGV 323

Query: 309 EQNMPHVSDRKVPLP---------RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSI 359
             N P    + V  P         ++ +   +   Q NYE+  +   T+     L +LS 
Sbjct: 324 AANTPPPDAQLVDGPPEATAVDGEQAADRDQEVSTQRNYELGREVAVTSTRPGGLVKLS- 382

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
                   +   +  +A          ++  ++SAA G +  RGDT+ +    F   Q  
Sbjct: 383 --------VAVAVSDAALAAAAPMTAEQLQSLISAAVGADEGRGDTVEVVVSAFENAQTQ 434

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                +  +   + R+   +I                         +          K +
Sbjct: 435 PLAFYEQKWFADVLRYATALIA----------------------VLLVLLLGVRPLVKRL 472

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             P   ++ + +     D  A D         S     ++              +     
Sbjct: 473 REPSAAAAELASDEGEGDETAYDQQQIAEEPVSDAFPQKVELA---------RQLAASQP 523

Query: 540 ERFAKILRKWA 550
           +R  + L++  
Sbjct: 524 DRAVEALQRML 534


>gi|125972986|ref|YP_001036896.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405]
 gi|125713211|gb|ABN51703.1| flagellar M-ring protein FliF [Clostridium thermocellum ATCC 27405]
          Length = 517

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/560 (15%), Positives = 178/560 (31%), Gaps = 57/560 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +  Q+  F+K+     +TRIL+ + +++V + + +     +    Y  L    +   ++ 
Sbjct: 8   MQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVQDPDSISA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I  AL E NI ++    G  I V S    +A   LA+ GL        +E    +     
Sbjct: 65  IEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVSS 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181
           +   ++       +  +   ++    +  A + + +P+   F         A+V I    
Sbjct: 122 SESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPKG 181

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHE 240
               +  E I  +VA+++  LD  +VTV+D+   +L  +     NI      +   I+ E
Sbjct: 182 ELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKEE 241

Query: 241 IEMNINKALAAFLG-VDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQRSE 298
           +E NI    +      D    AV   L++D     R+ +  P    E  +   +  +   
Sbjct: 242 LEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEELI 301

Query: 299 TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-- 355
                 A  ++ N                 + + K E  N        A       +   
Sbjct: 302 NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGTMNFQ 361

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
             S+ V +  G       +       D ++ E  + +S ATGI       IT+       
Sbjct: 362 ESSMTVALWYGNRVPDDSK-----LTDEFIEEFKQGLSNATGIPVG---KITVNKQKL-- 411

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                        +      +      ++ ++  +L         ++       +    G
Sbjct: 412 APQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVM----PRKKKSPQLAPELATAG 467

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G ++                                       IN     +   ++ + +
Sbjct: 468 GPNVDEAEEELP------------------------------PINFEEHSEIKKQIENFV 497

Query: 536 EINEERFAKILRKWARSEIE 555
           +   E  A++LR W   + +
Sbjct: 498 KQKPESVAQLLRNWLSEDWD 517


>gi|256004783|ref|ZP_05429758.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360]
 gi|281417197|ref|ZP_06248217.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20]
 gi|255991233|gb|EEU01340.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 2360]
 gi|281408599|gb|EFB38857.1| flagellar M-ring protein FliF [Clostridium thermocellum JW20]
 gi|316940778|gb|ADU74812.1| flagellar M-ring protein FliF [Clostridium thermocellum DSM 1313]
          Length = 517

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 86/560 (15%), Positives = 178/560 (31%), Gaps = 57/560 (10%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +  Q+  F+K+     +TRIL+ + +++V + + +     +    Y  L    +   ++ 
Sbjct: 8   MQQQVTDFWKNLDKSQKTRILVTSGILVVVLTIAIVM---LTRTTYVPLITVEDPDSISA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I  AL E NI ++    G  I V S    +A   LA+ GL        +E    +     
Sbjct: 65  IEEALKERNIKYK-HGEGRRILVDSKDKNEAEFALASAGLTEPGMT--FEDAWSLLKVSS 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAIN 181
           +   ++       +  +   ++    +  A + + +P+   F         A+V I    
Sbjct: 122 SESDKKQLWQNFKKNSLIAKLKMFDNVKDADIELTIPEDTMFFTDSKSEAKAAVRITPKG 181

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIVQAIQHE 240
               +  E I  +VA+++  LD  +VTV+D+   +L  +     NI      +   I+ E
Sbjct: 182 ELTPEQVEGIVMVVASSIEGLDPKNVTVVDNNFNILNQDLSDGMNIPSSHYKLKLRIKEE 241

Query: 241 IEMNINKALAAFLG-VDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQRSE 298
           +E NI    +      D    AV   L++D     R+ +  P    E  +   +  +   
Sbjct: 242 LEKNIKNLYSGRSDSYDFISVAVNPVLDLDKVTKNRKEIEKPTGLDEAVVSEERKTEELI 301

Query: 299 TSQPESAVTVEQN-MPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE-- 355
                 A  ++ N                 + + K E  N        A       +   
Sbjct: 302 NGNQGGAPGMDANPGTGDVPTYPIDAGQNSSYESKSEIINRIFTETLTAEEKAIGTMNFQ 361

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
             S+ V +  G       +       D ++ E  + +S ATGI       IT+       
Sbjct: 362 ESSMTVALWYGNRVPDDSK-----LTDEFIEEFKQGLSNATGIPVG---KITVNKQKL-- 411

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
                        +      +      ++ ++  +L         ++       +    G
Sbjct: 412 APQEEEIVPMSERIKQFIDDYGFFALLIILIIALMLSVM----PRKKKSPQLAPELATAG 467

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
           G ++                                       IN     +   ++ + +
Sbjct: 468 GPNVDEAEEELP------------------------------PINFEEHSEIKKQIENFV 497

Query: 536 EINEERFAKILRKWARSEIE 555
           +   E  A++LR W   + +
Sbjct: 498 KQKPESVAQLLRNWLSEDWD 517


>gi|253573518|ref|ZP_04850861.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251847046|gb|EES75051.1| flagellar M-ring protein FliF [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 527

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 93/578 (16%), Positives = 205/578 (35%), Gaps = 76/578 (13%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I     +F        + +  +L S     ++  +      +   Y+  +  L+ +
Sbjct: 1   MNERITQYRDRFLGYWNQFSKKQKTLLVSTATFILLAIILLTIQFSKTEYEVAFTGLDST 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           D   I   L    I +++  +G++ISVPS    + ++ + +QG+  + S  G E F++ +
Sbjct: 61  DAAGIINYLESGGISYKLGPDGTTISVPSKDAARVKVDVGSQGIVQNGS-IGLEAFNESS 119

Query: 119 SF-GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK--IGARPTASV 175
           S  G+T     +    A+ GE+ + ++ + G+  A+V I +P    F       + TAS+
Sbjct: 120 SLIGMTDNEFNVKYKNAINGEVEQLLKRMQGVNDAKVLINLPAENVFASPDEQEKATASI 179

Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG----- 228
           ++             +   +LV  +VPNL + ++++  S   +L  +             
Sbjct: 180 VLTFKPGYRPNQEAIDGYFNLVKTSVPNLPVENISLSSSDDTILLPSGQGGTTGSLTSAV 239

Query: 229 -KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP-----DS 282
            +++++ +  + ++  ++ + L+   G D     V ++LN D    ++ +  P       
Sbjct: 240 QENMALQKKFESDVRQSVKQFLSRLTGPDKIEVLVASKLNFDQVSQKDNLVTPVDTENMK 299

Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINT 342
            +E S +  + +     +         +    V +          ++++     NYE+N 
Sbjct: 300 GIEISAQKVQKSYTGSANPTSGVPGTGEE--DVVNYPSSETNGGSSSEESSSTINYEVNR 357

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV-------SAA 395
            +       Y ++ L+I V      +    G+        S +  I K +       S  
Sbjct: 358 ITKDIIASPYVIKDLTINV-----AVEPPEGQETLDENTRSAIENILKNIVGSYLADSGT 412

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           T  +      +++ S  F                D + +   ++ + LV+ VG   +  L
Sbjct: 413 TYTDEELQRKVSVLSQPFHS--------------DTVQKAGLSLSSPLVWGVGGAALLAL 458

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
               +        A++ E      L+P   S  + T    N                   
Sbjct: 459 AGLGIVLFRRRKQAQEEEEEIALPLTPEFPSINLDTVTNEN------------------- 499

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     Q   +L  + +   + F  +LR W   E
Sbjct: 500 ----------QVRKQLETLAKKKPDEFVNLLRTWLADE 527


>gi|330809237|ref|YP_004353699.1| flagellar M-ring protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377345|gb|AEA68695.1| Putative Flagellar M-ring protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 458

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 177/413 (42%), Gaps = 44/413 (10%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           +S    R  +     L+ + L  A+ ++V  P Y  LY   + +   +I   LS+ ++ +
Sbjct: 7   SSFLAGRTRVFLIGALLIVGLLAASAWWVLRPQYVALYRNADEASQAQILATLSQRHVPY 66

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           RI+    +I V +     AR++LA  G+P+     G+ELFDK + +G++ F Q+I   RA
Sbjct: 67  RINTQQGAIEVLADHAASARMYLAEAGIPTRGGT-GFELFDKAD-YGMSEFSQKINYQRA 124

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI--NPSVYKSAEAIR 192
           +EGE+ARTI S+S +  ARVH+       +++    P ASV++R       + +    I+
Sbjct: 125 MEGELARTIMSMSEVEYARVHLTFKKTSLYQQAEEPPKASVIVRLRSAGTLMPQRVRGIQ 184

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252
            LV++AV  + +  V+VL+  G++L+A++       + L +   ++  +++   + LA  
Sbjct: 185 QLVSSAVEGMTLERVSVLNEDGQVLSASD-GAAAAPEHLQLTAQVEQVLKLKAEELLARP 243

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNM 312
           LG      +V   +N D  +        +         S +    E              
Sbjct: 244 LGHRGVDVSVRVLMNFDRVKSISEQPLTNKMRREKRTESTENSNGE-------------- 289

Query: 313 PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVL 372
                       S     +   + +YE+      T H   K+ER+++ VV+         
Sbjct: 290 ------------STSKRSQNNREIDYEVGKARAETEHAAGKIERITVGVVL--------- 328

Query: 373 GRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQ 425
                    D+ + +I  ++ AA G++ +RGD + +  +  +           
Sbjct: 329 ----STPVSDAQMKDIQALLEAALGLDLKRGDRLVMVYIPDMPVPETTPVAEP 377


>gi|183220151|ref|YP_001838147.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910271|ref|YP_001961826.1| flagellar MS-ring protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774947|gb|ABZ93248.1| Endoflagellar biosynthesis/type III secretory pathway protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778573|gb|ABZ96871.1| Flagellar M-ring FliF protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 566

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 114/590 (19%), Positives = 217/590 (36%), Gaps = 66/590 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +   +    +    L +T+ +ILA V+ V ++  +      +  +   L+  L+  D + 
Sbjct: 5   LQKIIDNLKELFNKLDKTKKMILAGVLAVVVVAVIILSNVSSQRNRVVLFKDLDSKDFSE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L      +  S   S I+V      +    LA + L  +    G+ELFD +  F  
Sbjct: 65  VTKKLDALGYSYG-SSETSLITVDPEQRQEIVTKLAQENLIPAGVT-GWELFD-IEKFTE 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           T F ++I + RAL+G I +++ ++  I  A V+I +P+   F        ASV++     
Sbjct: 122 TQFDKDIKKYRALKGAIEKSLNTLRPIEKADVNIAIPEGDLFESNSYPVKASVILHFRPG 181

Query: 182 --PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAI-- 237
                 K  + I +LVA AVP L   +V+V D  GK+++  E +       L IVQ    
Sbjct: 182 VEGISKKEIKGIVNLVARAVPKLKPENVSVADPDGKIISDFEEDLEKERLELRIVQEKLR 241

Query: 238 --QHEIEMN---INKALAAFLGVDNFRSAVVA---ELNMDTQQIRE--------IVYDPD 281
             + E       I   L  +LG    R  +       N D + + E           +PD
Sbjct: 242 IEEEERVKRLIDIRNTLRWYLG-GEDRVDITRFEYSFNWDQESLTENEVLPVVAEEDNPD 300

Query: 282 SKVER-----------SIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
           +               S + +K++ +     P+     E N+P                 
Sbjct: 301 TPYNERKLVDGYSLKVSSKETKESFKGRGFTPDGPAGTEPNLPP---GYKDTDYQKAEYS 357

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----RSADQGKIDSYL 385
           K E  +NYE N +        +K+E++ ++VVV+     +                +  L
Sbjct: 358 KDENINNYEFNKRVKDIKRQPWKIEKIGLSVVVDGVWERKEREDGLGYDRKYIPVAEPDL 417

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
             I K + AA G    RGD I++ ++     + F +   +        R    ++ A + 
Sbjct: 418 KLIRKNLEAAIGYTRSRGDQISVITIPKDRTEQFRAEDEEF----QRQRAIRNMVIASLV 473

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
           ++  L++  L   A+++        + E            +  V         ++LD   
Sbjct: 474 ILILLILAILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDEGGAEVELSLDE-- 531

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                            + ++     +++ +   E  A++LR W   E +
Sbjct: 532 ----------------KLRRELLENAINLAKEKPEDVAQLLRTWLAEEEQ 565


>gi|302338077|ref|YP_003803283.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293]
 gi|301635262|gb|ADK80689.1| flagellar M-ring protein FliF [Spirochaeta smaragdinae DSM 11293]
          Length = 569

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 103/598 (17%), Positives = 209/598 (34%), Gaps = 74/598 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEV 57
           M   +   + Q           + LILA+V++V ++  +       +P    L    +  
Sbjct: 1   MNEWLKKSIDQLKALWGKWSMVQKLILAAVVVVAVVGIVLMLHVSATPSMVPLITAPITD 60

Query: 58  SDV-NRISVALSEANIDFRISDNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELF 114
            D  ++ISV L E  ++  I+  G  I VP     + R+   LA + L  + ++  +++F
Sbjct: 61  QDKLDKISVRLDEEGVEHTITAEGL-ILVPDKRTAQ-RMVSILAREDLIPADTSP-WDIF 117

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
            K++ + LT F + +   RA+   + + I+++  +  A+V +V+P+   F++     TAS
Sbjct: 118 -KMDRWTLTDFERNVNLRRAITENLEQHIEALEDVDNAQVTLVLPEDKLFQEDQNPVTAS 176

Query: 175 VMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----N 225
           V+I     S         E I  LV  AV  L   ++ + D  G +L             
Sbjct: 177 VIITPRPGSDITQSRSKIEGIVKLVRLAVEGLKDENIVISDQRGVVLNDFADMADFDRLE 236

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVY------ 278
           +  + L   Q ++   +  I   ++   G D      V  +L+   + +    +      
Sbjct: 237 LSKRQLDQKQRLEATYKNQIFTEMSQIFGSDRVSILKVDIDLDFRKETVSTEEHFPVTTV 296

Query: 279 --DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
             +P++            RS  + K+  +     PE     E   P            + 
Sbjct: 297 EDNPNTPYNEREYVLSIPRSSEIVKEEFKGTGFNPEGPPGQEGQTPPAYKDM---NNLVG 353

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG------------RS 375
           N +K  E  N E+NT++I      + + R+++ V V+                       
Sbjct: 354 NYNKNSEIINQEVNTRNIVEEKSPWTIRRITVGVAVDGVWRWSYNENGTVKLDTDGSIER 413

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                 D  L +   ++  A G N  RGD++T+  + F  +  F            L + 
Sbjct: 414 EYTPVSDEDLNKAQTLIEHAVGFNRERGDSVTVQHIQFDRSNQFAQEDEHFRAQKRLQQ- 472

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
               I   +  +  ++V F+    + R        + E   +        +         
Sbjct: 473 ---AILYSIIGLAVIIVAFIVFRLISRELERRRRLREEELARQHQMMREAAL-------- 521

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                     ++       +   +      +     ++M   + E  A+++R W   E
Sbjct: 522 ----------RNAEEEEMEVAMSVEERARMEMQENAINMAREHPEDVAQLIRTWLAEE 569


>gi|220929468|ref|YP_002506377.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10]
 gi|219999796|gb|ACL76397.1| flagellar M-ring protein FliF [Clostridium cellulolyticum H10]
          Length = 523

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 95/559 (16%), Positives = 190/559 (33%), Gaps = 54/559 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L         L +++   +  +  V ++      F +  P Y  +      +DV  +   
Sbjct: 9   LKPLLDFWKGLDKSQKTRIFIITGVVVVSVGIGLFLITRPTYTTVISNASSADVAAMQKI 68

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN--SFGLTS 124
           L E  I ++++D+ S I V      +A   L      S+ S SG+   D ++      T 
Sbjct: 69  LKEKGISYKLTDDKSGIIVNEKDSDEAHFEL------STGSKSGFTFADALSNLKINTTE 122

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS--FRKIGARPTASVMIRAINP 182
             ++    +  E +IAR ++    I  A V IV P+              ASV+I   + 
Sbjct: 123 SDKKHIWQQLDESDIARQLKLFQNIEDANVTIVRPEKTLLIDDSNSKDAKASVVITPKDE 182

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT-ANEMERNILGKSLSIVQAIQHEI 241
              K AE+I  LVA++V  LD  +VTV+D+ G +L   +E   +       + +  ++++
Sbjct: 183 ISAKQAESIVKLVASSVEGLDPKNVTVVDNKGNILNIDSESGMDKTSTQYDMKKKYKNDL 242

Query: 242 EMNINKAL-AAFLGVDNFRSAVVAELNMDTQQIRE-IVYDPDSKVERSIRLSKDAQRS-E 298
           E N+ + L       D  +  V   L+ DT         +P+     +I   ++ +   +
Sbjct: 243 ERNLREVLVDQLDSFDTAKVVVNPVLDFDTLTQSSKEYTNPNGADSGAILSRQETREDLK 302

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK--LER 356
                    V  N P  +          ++  K +   N++ N  +        +   ER
Sbjct: 303 NGDTGGTPGVNSN-PGTTPTYPAGSDDSKSYKKSDLTENFQYNETNKQIEKSLGELIPER 361

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
            S A+ +  G       +       D  + ++  + S ATGI +       I        
Sbjct: 362 SSAAITLLYGNRVLDDSK-----LNDEMITQVKNLASMATGIPAE-----NIAVTKLKIQ 411

Query: 417 QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGG 476
                       +  L  ++  +    +  +  +++                        
Sbjct: 412 PPVVETPSTADTIRNLISNYGLLALLALMAIAFVIIAL---------------------- 449

Query: 477 KSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIE 536
                P      +   L  +DN A+ S               I++    +   ++   ++
Sbjct: 450 -----PKKSKQKLEPALAVDDNAAITSPKFVYNEIRPEPVPEIDTEERSEVKKQIDKFVK 504

Query: 537 INEERFAKILRKWARSEIE 555
              +  A++LR W   + E
Sbjct: 505 QKPDAVAQLLRNWLTDDYE 523


>gi|330946121|gb|EGH47363.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 236

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 4/236 (1%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK 92
           + +  A   +   P Y  LY  L   D  +I   L+ ANI++ +  N  ++ V S  V +
Sbjct: 1   MAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLTAANINYTVEPNSGALLVKSDDVQR 60

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  S +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 61  ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 120

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++              AI +LVA +VP L    +TV+
Sbjct: 121 RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 180

Query: 211 DSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVA 264
           D  G LL+         + GK     + ++  +   +   L   LG D +++ V A
Sbjct: 181 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSA 236


>gi|218681104|ref|ZP_03529001.1| flagellar MS-ring protein [Rhizobium etli CIAT 894]
          Length = 282

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 167/272 (61%), Positives = 212/272 (77%), Gaps = 2/272 (0%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +IL  V  V I + +AA  FVN P  + LYV L+  D+N+IS+AL+EANI+F++  +GSS
Sbjct: 1   MILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDQPDLNQISMALAEANINFQVGTDGSS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           ISVP+ M GKAR+ LA +GLP +S+N+GYELFD V S GLTSFMQE+TRVRALEGEIART
Sbjct: 61  ISVPAGMTGKARLMLAERGLP-NSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIART 119

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           IQSISGI AARVHIVMP++G+FRK   +PTASVMIRA   +   +A +IRHLVA+AVP L
Sbjct: 120 IQSISGITAARVHIVMPEVGNFRKQEQKPTASVMIRASAVTGRSAATSIRHLVASAVPGL 179

Query: 203 DMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSA 261
           D+ DVT+LDS G+LL + +   N    +SL IVQ +Q E+E NI+KALA FLG+DNFRS+
Sbjct: 180 DVDDVTILDSAGQLLASGDDASNSSLNRSLGIVQNVQQEVESNIDKALAPFLGMDNFRSS 239

Query: 262 VVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           V A+LN D QQI+E  YDP+SKVERS+R +K+
Sbjct: 240 VTADLNTDAQQIQETTYDPESKVERSVRSTKE 271


>gi|291519597|emb|CBK74818.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Butyrivibrio fibrisolvens 16/4]
          Length = 537

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/560 (13%), Positives = 175/560 (31%), Gaps = 37/560 (6%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AIL+++L++++  T   R + +++ S+  V ++  +     +  P    L V  +     
Sbjct: 7   AILNKILEWWRKFT---RRQQVLIVSITAVVVVSLIILGVILTRPTMMQLVVCEDGKQAA 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L +  I +  S +G +  +      +A + L +  +P+S       +     SF 
Sbjct: 64  AVKTLLEDEGIKYETSQDGYTFYIDEKDEWRANVLLGSNEIPTSKYTIDNVI---DGSFS 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180
            T   ++      LE + A  I+    +  ARV + +P+   +         +SV++   
Sbjct: 121 TTEADKQKRYKILLEQQFAEDIEQFEMVEKARVTLNIPEDDGTIIARDQPGWSSVILTLS 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA---NEMERNILGKSLSIVQAI 237
            P   ++   I  ++A  + N    ++T++D+ G LL               +       
Sbjct: 181 APISDETVTGIATIMATNLANETTDNITIMDTDGNLLYPTANTGSAGASASANQDARDKA 240

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ-IREIVYDPDSKVERSIRLSKDAQR 296
           + EI   +   L      D     V   +N D    +       + + E  +     +  
Sbjct: 241 RAEIVSRVQTVLDGTNLYDAVSVGVNLSMNFDENSYVDYDYSVDEGRTEGYLDSESGSSS 300

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK--L 354
           S           +          V    +   T  +E   +Y  + +      +  K  L
Sbjct: 301 SSIGGNGGVPGTD--TNDDDTTYVMEDNNQTQTSTEEFVKDYLPDERITTHKDEIGKQIL 358

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +  SI+V   K  +        D    ++       + + +  +     D I        
Sbjct: 359 DDSSISVTCKKFAIYNQDKMEKDGTLTEAGQTFDEFVKANSNPVQMEVTDDIVEIVARTT 418

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              + N   V              +    +  +   L+ F  L  +       + ++   
Sbjct: 419 GFPVANVKVVAYEIPMFQYSEGMPIKPTDIIQIVLALLIFAMLGFVVFRSLKTEEEEPVE 478

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
              +I      ++A     + +                      I      ++ + +   
Sbjct: 479 QELTIDDLIASTAAEEEEELED----------------------IGYTEKSEARILIEKF 516

Query: 535 IEINEERFAKILRKWARSEI 554
           ++   E  A++LR W   + 
Sbjct: 517 VDEKPEAVAQLLRNWLNEDW 536


>gi|326411311|gb|ADZ68375.1| flagellar MS-ring protein [Brucella melitensis M28]
          Length = 239

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 144/227 (63%), Gaps = 1/227 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 6   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 65

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 66  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 125 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 184

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N   
Sbjct: 185 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAA 231


>gi|50954404|ref|YP_061692.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950886|gb|AAT88587.1| flagellar M-ring protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 441

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/404 (24%), Positives = 175/404 (43%), Gaps = 20/404 (4%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
                 +  +    +LV  +       +++ P    LY  L  +D   I+  L   N+ +
Sbjct: 17  AGFSFAQKTVSILAVLVLALGVTGLSLWMSQPQRVPLYTGLSAADAEAITQQLKTDNVSY 76

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           +++D GSSI VP   V   R+  AA GLP +++N GY L D ++    + F Q +T  RA
Sbjct: 77  QLTDGGSSILVPQESVYTERLKSAAAGLP-TAANKGYSLLDNMS-ITTSEFQQSVTYQRA 134

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIR 192
           +EGE+A TI+++ G+ ++ V + +P+   F    A PTASV I     +       +AI 
Sbjct: 135 MEGELANTIEAMDGVKSSSVKLAIPEKTVFTDQAADPTASVFIATASGHTLTRGQVQAIV 194

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF 252
           HL +AA+  +   DV+V+DS+G +L+A     ++   +      +Q  ++  +   L   
Sbjct: 195 HLTSAAIVGMKPADVSVIDSSGAVLSAIGGSASVSDGTAD---TLQASVQSAVQGMLDKV 251

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQRSETSQPESAVTVEQ- 310
           LG  N      A L+  T       Y  P      S    K+            +     
Sbjct: 252 LGSGNSTVTANASLSQATGTKTTQTYTVPTGAPVTSSSEEKETYTGSGPAAAGVLGQPSL 311

Query: 311 -NMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
               + +           +    +   +  +N+ +   +     L+RL+++VVVNK    
Sbjct: 312 DVATNGTRNTTRAVGGNGSYQSAKLVKDNALNSVTETQSIPAGLLQRLTVSVVVNKTVAE 371

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
                +          A+++++VSAA G+ + RGDT+++  + F
Sbjct: 372 AAGLAT----------AQLSQMVSAAAGVETTRGDTVSVEFVGF 405


>gi|256042874|ref|ZP_05445820.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112169|ref|ZP_05453090.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 3 str.
           Ether]
          Length = 237

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 144/227 (63%), Gaps = 1/227 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 4   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 64  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 122

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 123 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N   
Sbjct: 183 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAA 229


>gi|17988495|ref|NP_541128.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M]
 gi|265998972|ref|ZP_05464502.2| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|17984286|gb|AAL53392.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M]
 gi|263091454|gb|EEZ15990.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|326554600|gb|ADZ89239.1| flagellar MS-ring protein [Brucella melitensis M5-90]
          Length = 242

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/227 (48%), Positives = 144/227 (63%), Gaps = 1/227 (0%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
                + Q   +   LG  +++ L  V    +   +    ++  P Y+ LYV L   DVN
Sbjct: 9   NFQQLIEQLKGTLGKLGARKLIALGLVGAALMGAILYTSIYLGRPSYETLYVGLSRDDVN 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           R+ +AL EA I F +  +GSSI VP      AR++LA +GLP+S+ N+GYELFD + S G
Sbjct: 69  RMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGLPTSN-NAGYELFDNMGSLG 127

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
           LTSFMQEITRVRALEGEIARTIQ+I G+ AARVHIV+ + GSFR+   +P+ASV+IRA  
Sbjct: 128 LTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEG 187

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG 228
               +SA++IR LVAAAVP+LD   VTVLD+ G LL +     N   
Sbjct: 188 GFSAESAQSIRQLVAAAVPSLDASSVTVLDTNGHLLASAGEGANGAA 234


>gi|291536002|emb|CBL09114.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Roseburia intestinalis M50/1]
          Length = 532

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/561 (14%), Positives = 182/561 (32%), Gaps = 42/561 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            IL+++ +++K        +  +L S++ V I+        V+ P+   L+     ++  
Sbjct: 7   NILNKITEWWKKFN---TKQKALLISIVAVIIVALAILAAVVSKPNMVTLHECQTTAEAG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L   +I +++S +G    V +     A I L    +PS  ++    +FD    F 
Sbjct: 64  TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASID-NVFD--GGFS 120

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180
            T   +       L+   A  ++++S + +A V + +P+   +         A+V++   
Sbjct: 121 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 180

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237
                  A  +   +A  + N +  ++ +LDS   +L + +            LS+    
Sbjct: 181 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 240

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQR 296
           ++ ++  +   +      D+   A    ++ DT +      Y PD +    +    + + 
Sbjct: 241 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 300

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  +    + N        V    +  ++   +  +NY+ N K    + +   +  
Sbjct: 301 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 357

Query: 357 --LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
              S+++V  K R+ +     A     +    E     S  T I   +     I++   +
Sbjct: 358 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYITMISNATGI 417

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                     +       S                            R  +        V
Sbjct: 418 PTDKITIIAQEEPVFQYSSGG--------------------------RSASDYLQIVLVV 451

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
               +L      S     +   +      S  +    S+     I      ++ + +   
Sbjct: 452 LILLLLGYVVFRSTRKEKVAEIEPELSVESLLESTKESQEEMQDIGYNEKSETRILIEKF 511

Query: 535 IEINEERFAKILRKWARSEIE 555
           +E N E  A +LR W   E E
Sbjct: 512 VEDNPEAAASLLRNWLNEEWE 532


>gi|257413753|ref|ZP_04744108.2| flagellar M-ring protein FliF [Roseburia intestinalis L1-82]
 gi|257202322|gb|EEV00607.1| flagellar M-ring protein FliF [Roseburia intestinalis L1-82]
 gi|291538496|emb|CBL11607.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Roseburia intestinalis XB6B4]
          Length = 537

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/561 (14%), Positives = 182/561 (32%), Gaps = 42/561 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            IL+++ +++K        +  +L S++ V I+        V+ P+   L+     ++  
Sbjct: 12  NILNKITEWWKKFN---TKQKALLISIVAVIIVALAILAAVVSKPNMVTLHECQTTAEAG 68

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            +   L   +I +++S +G    V +     A I L    +PS  ++    +FD    F 
Sbjct: 69  TVKDLLDGESISYQMSQDGLIFYVDAKDEAAASILLGKNDIPSQGASID-NVFD--GGFS 125

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180
            T   +       L+   A  ++++S + +A V + +P+   +         A+V++   
Sbjct: 126 STEADKTKKYKVYLQKYFAEQLETLSNVESASVTLDIPNDDGTILAKDQDSYAAVILTLN 185

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAI 237
                  A  +   +A  + N +  ++ +LDS   +L + +            LS+    
Sbjct: 186 GDMDEDQAAGLAKYIATQLGNKNTDNIQILDSNSNVLFSGDSSDTNVGTANSQLSVKSKA 245

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQI-REIVYDPDSKVERSIRLSKDAQR 296
           ++ ++  +   +      D+   A    ++ DT +      Y PD +    +    + + 
Sbjct: 246 ENLVKSKVKDVMVGSSLFDHVEVAPELVMDFDTSEEATHEYYAPDGQTNGMVGSKSEYES 305

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                  +    + N        V    +  ++   +  +NY+ N K    + +   +  
Sbjct: 306 ESEGGAAATPGTDSN---DDTSYVIEDNNYTHSTVTDTTTNYQNNEKVTKKSSNGGTVNY 362

Query: 357 --LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
              S+++V  K R+ +     A     +    E     S  T I   +     I++   +
Sbjct: 363 ADSSVSLVATKYRIYDEDTLRASGALDNMTFDEYVAANSDPTPITVDQEYITMISNATGI 422

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                     +       S                            R  +        V
Sbjct: 423 PTDKITIIAQEEPVFQYSSGG--------------------------RSASDYLQIVLVV 456

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
               +L      S     +   +      S  +    S+     I      ++ + +   
Sbjct: 457 LILLLLGYVVFRSTRKEKVAEIEPELSVESLLESTKESQEEMQDIGYNEKSETRILIEKF 516

Query: 535 IEINEERFAKILRKWARSEIE 555
           +E N E  A +LR W   E E
Sbjct: 517 VEDNPEAAASLLRNWLNEEWE 537


>gi|225619610|ref|YP_002720867.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1]
 gi|225214429|gb|ACN83163.1| flagellar MS-ring protein [Brachyspira hyodysenteriae WA1]
          Length = 542

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/570 (18%), Positives = 205/570 (35%), Gaps = 70/570 (12%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVALSEANIDFRISDNGSS 82
           +L  ++++ +   +A     +      L+ + L   D   +   L   NI ++   NG  
Sbjct: 1   MLIGILVIGLGAIIATIVLTSRRTGTLLFQQALTQEDARNVIAVLDANNIRYQYR-NGFI 59

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
                +   KA + L  +G   +  + G+ELFD     G+T    +I + R+L   I + 
Sbjct: 60  TLNSEADKAKAELELVKEGRMPTGVD-GWELFD-APRIGITDVELDINKRRSLTKAITQL 117

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-----SVYKSAEAIRHLVAA 197
           +  +  +  A V +  P       I +  TASV+I+A           K+   ++ L+A 
Sbjct: 118 LTKLDFVQEATVDLAFPKKEYLTDIDSPVTASVVIKAQPFKEEVLRDPKTVRGLQQLIAM 177

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSLSIVQAIQHEIEMNINKALAAF 252
            V  L    VT+ DSTG +LT    E       +  + L IV   + +IE  I + L   
Sbjct: 178 GVDKLKPEFVTITDSTGYVLTDFTDEAANLKLKVAQEELKIVDRERKKIENKIRQTLGRI 237

Query: 253 LGVDNFRSAVVAELNMDTQQIREIVYDP-----------------DSKVERSIRLSKDAQ 295
              +   + +  EL  D   I   +  P                  +KV+ S R   +  
Sbjct: 238 Y-TNRVETTIALELIWDDVSITNNLVLPIILKEDDPATPYDDSQFTNKVQVSTRTVTEDW 296

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           + +   P+ A   E+N+P     K    ++     K + Q NYE++ +  A    +Y++ 
Sbjct: 297 KGQQFIPQGAAGAEENVPPGYKDKSDRWQT---YTKTDSQDNYELSKRYEAIKKGSYQIG 353

Query: 356 RLSIAVVVNKGRLTEVLGR------------SADQGKIDSYLAEINKIVSAATGINSRRG 403
           ++S AV ++                                +  +  +V AA G + +RG
Sbjct: 354 KISAAVALDGRWTKSYDQNGDPIITNGTSYVREYHPVTAEEIRNVTSLVQAAIGYDLKRG 413

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           D +++T + F     FN+   ++    +  R     +   +  +  L V  L + A+++ 
Sbjct: 414 DQVSVTHIQFDHWDRFNAEDAKL----MRDRFIRKTLIITMISLLILFVLALAIRAIQKE 469

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                  + E   +  +     +                       +     +  +    
Sbjct: 470 LARRRRLREEELERKQMEMRRQAMM-------------------NANEEPISEMSLEDAA 510

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
            K+    ++ +     +  A++LR W   +
Sbjct: 511 RKKLMDEVIRVSHERPDDVAQLLRTWMADD 540


>gi|331005448|ref|ZP_08328827.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
 gi|330420724|gb|EGG95011.1| Flagellar M-ring protein fliF [gamma proteobacterium IMCC1989]
          Length = 469

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/433 (21%), Positives = 168/433 (38%), Gaps = 44/433 (10%)

Query: 14  GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
                +   +ILA V ++ +++      +  + +Y +L+V LE  D   I   L     +
Sbjct: 2   LNGFSKQSKIILAVVSIILLIILGFTAQWALNKNYQSLFVGLEPKDSAAIVQQLDALKAE 61

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
           +RI+    ++ VPSS V   R+ L    +  S    GYE+FD  + FG+T F Q I   R
Sbjct: 62  YRINKETGNVEVPSSQVHSTRLQLMGTDVTISGG-VGYEIFDNSD-FGMTEFAQRINYQR 119

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSVYKSAEAI 191
           ALEGE+ RTI S+S +  +RVH+V+P+   FR+   +P+ASV +  +            I
Sbjct: 120 ALEGELQRTITSLSQVKKSRVHLVLPERSLFRENKEQPSASVTLIVKKGMSLTGTQISGI 179

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTAN---EMERNILGKSLSIVQAIQHEIEMNINKA 248
           + LV+++V  L    V + D  G  L+     +     +   L   + I+  +   +++ 
Sbjct: 180 QRLVSSSVSGLKEPMVIINDQQGVTLSQEIPADEIAQAIPWRLKQKKDIESYLTEKVSRV 239

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308
           L       +   ++   ++ +  +  E    P ++ +   R  +           +   V
Sbjct: 240 LRYAFKDGDIAVSIDVIIDFNYTKKMEEKVIPLAEGKAISREKESFIGGNKKTKNNNSNV 299

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
            +                         + YE+      TT    K+++LSI +++ K   
Sbjct: 300 TKE------------------------TEYEMGRSVAETTESPGKIQQLSIGIILTKF-- 333

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                        ++   E+ ++V    G N  RGD I I +   +           +S 
Sbjct: 334 -----------LSENDKQELQRLVETTVGFNENRGDHIAIYTSLAIPETKEMGDKPALSV 382

Query: 429 MDILSRHFATVIN 441
                      I 
Sbjct: 383 QPKTLDDHLPPIK 395


>gi|213861543|ref|ZP_03386013.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 264

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 13  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 72

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 73  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 130

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK--SA 188
             RALEGE+ARTI+++  + +ARVH+ MP    F +    P+ASV +             
Sbjct: 131 YQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQI 190

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSLSIVQAIQ 238
            A+ HLV++AV  L  G+VT++D +G LLT +    R++    L     ++
Sbjct: 191 SAVVHLVSSAVAGLPPGNVTLVDQSGHLLTQSNTSGRDLNDAQLKFANDVE 241


>gi|315654577|ref|ZP_07907483.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333]
 gi|315491041|gb|EFU80660.1| flagellar M-ring protein [Mobiluncus curtisii ATCC 51333]
          Length = 453

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 95/417 (22%), Positives = 172/417 (41%), Gaps = 29/417 (6%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I++ + +   +       +  +    + V I+  +    +V SP Y  LY  L   D   
Sbjct: 5   IVNAVDKVKNTVGQFSLGQKTLSIIGVAVLILGGVVLYSWVASPDYTTLYSGLTDKDQAA 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L    I ++++DNG  + VP+  V  AR+ LAA  LP +   SGY + D +     
Sbjct: 65  VTEQLDSQGIKYQVADNG-VVKVPAKDVQSARMSLAAADLP-AQPTSGYAVLDNL-GVAA 121

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN- 181
           + F Q++ + RALEGE+A+TI ++  I  + V + +P    F         +  +     
Sbjct: 122 SDFQQQMAKKRALEGELAKTIDTMDDIDKSSVALAIPQETVFADPKKPVATTASVTITPK 181

Query: 182 ---PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQ 238
                   + +AI ++VAA+VPNLD   VTV+D+ G  L+                  ++
Sbjct: 182 NRKDVSNDTVQAIINMVAASVPNLDKTGVTVVDTLGNSLSDKVEGGTAAAS------EME 235

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVERSIRLSKDAQRS 297
             +       +   +G  N R +   +L+ D Q     +Y DP+  V+     +   Q S
Sbjct: 236 KSLVDKALAVVEPLVGAGNARVSAQVDLSQDNQVKTTRIYTDPEGGVKPLSASNAAEQYS 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
                   V    N+ +          +  N    +   N  +N +   +T       R 
Sbjct: 296 GGGAVVGGVLGPDNIGNP---YELNGNNGGNYTNTQNVQNNAVNEEVTQSTRAPGAALRK 352

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           S++VV+N+     +             +A++  +V+AATGI++  GD + I+   F 
Sbjct: 353 SVSVVLNQETARRLD------------MAQVRDMVAAATGIDAATGDVVNISRSPFD 397


>gi|326791543|ref|YP_004309364.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427]
 gi|326542307|gb|ADZ84166.1| flagellar M-ring protein FliF [Clostridium lentocellum DSM 5427]
          Length = 529

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 85/575 (14%), Positives = 193/575 (33%), Gaps = 73/575 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYV-KLEVSDV 60
            I     Q  +   +L + + + +   +L  I+   A    +  P   NL+   L+   +
Sbjct: 4   TIEQISNQITEKLNNLTKKQKIQIGIGVLALIIAITAVVL-LTRPKMKNLFSENLDSKSI 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +++  L+E  I +++ ++ ++I V  +   +A ++ A   +P S       +    N+ 
Sbjct: 63  GQVATVLNENGIKYKLINDSTNIQVQENQYEQALMYTAMSDVPESGMTFDQVI---NNTM 119

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRA 179
             T            + ++ RT++S+ GI +ARV +V+P+   ++ +      AS+ +  
Sbjct: 120 STTQTEMTAKNNEYKKQQLERTLRSMEGIESARVELVIPEQKNAYLQSQVESRASIFLTL 179

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQ 238
                 K  E I   ++++V NLD  ++ V+DS G  L +   E  +   K   I    +
Sbjct: 180 SKTLTTKQCEGIATYISSSVANLDKKNIVVIDSQGNTLYSGSEESQLGLNKQQEIKLLAE 239

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERSIRLSKDAQ 295
            ++   ++  L      D+ R +    L+ D  Q           D       + ++ + 
Sbjct: 240 QDVTQKVSNLLGNMY--DDVRVSPNLILDFDQYQESSQKYQTQGEDESRGVIQQETQASS 297

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            ++ +Q  +      N   +   +     S E+ + +++ + Y  +        +   ++
Sbjct: 298 STKNNQTGAEPGTTTNGGDIPTYQTNNGTSGESKETQKDIT-YAPDKTESVYVKNPGNVD 356

Query: 356 ----RLSIAVVVNKGR------------LTEVLGRSADQGKIDSYLAEINKIVSAATGIN 399
                LS+ +  NK                     S  + +  +    I   V +ATGI+
Sbjct: 357 LEKSSLSVNLFKNKIYREEEVKPTLTGMTWNEFKVSNREQRTLAVDESIVNSVKSATGID 416

Query: 400 SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHA 459
                   +    +      +    Q+ + D L   F  +   L+  V            
Sbjct: 417 -------NVVVNAYENPIFLDQEVYQIDYKDYLPLVFLVLALLLIAFVVLRF-------- 461

Query: 460 LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRI 519
                                             +      L+       +  +     I
Sbjct: 462 -----------------------------RKHEEIVEVEPELEVEEMLKAAKEQVELEEI 492

Query: 520 NSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
               + ++  ++   ++   E  A +LR W   E 
Sbjct: 493 ELKETLETKRQIDKFVDEKPEAVANLLRNWLTEED 527


>gi|238916746|ref|YP_002930263.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750]
 gi|238872106|gb|ACR71816.1| flagellar M-ring protein FliF [Eubacterium eligens ATCC 27750]
          Length = 536

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 83/571 (14%), Positives = 192/571 (33%), Gaps = 54/571 (9%)

Query: 3   ILDQLLQF----FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           +LD+L Q      +   +  R + +I+ S ++V I   +   + ++ P Y  L    + S
Sbjct: 1   MLDRLKQIPARLLEIWKNWTRNQKIIIVSAVVVFIAAVIVIAYVLSRPTYQELTKCEDYS 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-V 117
           ++N ++  L++    ++I++   +++V    +  A++ +A+  +      SGY L D   
Sbjct: 61  EMNTVTTLLTDNGYTYQINN--MTVNVKKQDLTNAKMLIASNDI----KPSGYSLDDALN 114

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVM 176
           +S   T   +     + LE + A  I S+ GI  A V + + D  + F       T +V 
Sbjct: 115 SSLTTTEADKNKKYAKYLETKFATDIASLDGIKKASVTVHLSDDTNSFYSTKKDTTVAVT 174

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER-----NILGKSL 231
           +         +AE+I   +A AV +     +T++D+TGK L                  L
Sbjct: 175 VDTSKTVSDDAAESIAVFLATAVGSSTTNGITIIDTTGKTLFNGSDNSGSVSNISYSSKL 234

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ-QIREIVYDPDSKVERSIRL 290
                I+  +   +     +    ++   A+  +L+ DT  +I       + + E     
Sbjct: 235 KYKSQIESTVAAGVKNTALSTSLFNDATVAINLDLDWDTVNKIATEYTAQEGREEGLYDT 294

Query: 291 SKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           S + + +  +          N    +        +  ++    +Q  Y  N     T  +
Sbjct: 295 SYELESTGNNGAGGTPGTTSNGEGGT-TYDLTDGTSSSSTYTVKQYQYLPNQLVTTTNTE 353

Query: 351 NYKLERL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408
             K+     +++V + K  +             +    E     +    +         +
Sbjct: 354 PGKIVYDTSTMSVTLIKNVVYNEDDCKKLGYLDNMTWDEFKAQNADPVQVQVNADWMNML 413

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSR-----HFATVINALVFLVGTLLVTFLGLHALRRL 463
           ++   +           V +    ++       +  I   + +    ++ F+ L + R L
Sbjct: 414 SNATGISTNNITVLAYNVPYFYDAAKTSVLSRASFWIQIALAVAILGILVFIVLRSARPL 473

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
              +   +  V      +                              ++     I+   
Sbjct: 474 TVEEKEPELSVEEMLAST----------------------------KENQPTVDEIDLQE 505

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             ++   +   ++ N E  A +LR W   + 
Sbjct: 506 KSETRKAIEKFVDENPEAVALLLRNWLNDDW 536


>gi|254499113|ref|ZP_05111803.1| truncated flagellar M-ring protein FliF [Legionella drancourtii
           LLAP12]
 gi|254351652|gb|EET10497.1| truncated flagellar M-ring protein FliF [Legionella drancourtii
           LLAP12]
          Length = 403

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/411 (21%), Positives = 166/411 (40%), Gaps = 48/411 (11%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +  L+  D N++   L + NI +++   G  I +   +V K R+ +   GL   + N G+
Sbjct: 2   FSHLDEQDANKVLSQLEQENISYQVRHGGQDILIDKDLVAKTRLKIMGSGL-QLAGNVGF 60

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
           ELFDK + FG+T F Q+I   RAL+GE+ RTI S   I  ARVH+V+P+   F     +P
Sbjct: 61  ELFDKND-FGMTDFSQKINYQRALQGELERTISSFDEIRQARVHLVIPETHLFDHEENQP 119

Query: 172 TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL 231
            A++ +        +   +I+ LVAA+V +L + +V V+D  G  L+  E +  +     
Sbjct: 120 KAAITLHLKQALTNQQVRSIQQLVAASVAHLSLKNVVVVDQNGNTLSQTEED--LSSTHF 177

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
           +  + I+H +   + + L      +     + AE+N D  +++  +  P +K + +    
Sbjct: 178 ASKKNIEHYLNDKVTQMLHKIFAKNQVMVKINAEINYD--ELQRELIKPQTKGQITHEKE 235

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
                                  V  +           +K      YE  ++       +
Sbjct: 236 IKHST------------------VDKKGKQKGNQDLTLEKT-----YEFGSEKELFKRAS 272

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS- 410
             +ERLSI+VV+ +                   +A++ +++    G N +RGD I++ + 
Sbjct: 273 GTIERLSISVVIPQYT-------------DAKTIAQVQRLIKNTVGFNEKRGDVISVEAL 319

Query: 411 -----MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
                          + T Q +          T  +        L + F  
Sbjct: 320 IAQPVFSTKRPSPILNATPQTAMTISFWETMHTYWDKDKQWQAILALLFFI 370


>gi|302387796|ref|YP_003823618.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1]
 gi|302198424|gb|ADL05995.1| flagellar M-ring protein FliF [Clostridium saccharolyticum WM1]
          Length = 534

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 169/528 (32%), Gaps = 50/528 (9%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA 98
               +    Y+ ++  +   +  +I   L E  +D++  +    I VP++ +   +  L 
Sbjct: 35  MALSMREKPYEVMFTSVGNEEAKQIIGKLQEEKVDYQYLN--GDILVPAAQMDVTKARLV 92

Query: 99  AQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           ++G P S     Y++F    +   T   ++  ++  LE  I  TIQ   G+  A V I +
Sbjct: 93  SEGYPKSGFT--YDVFKNNVNLMTTDSDRQTFKLYDLETRIGSTIQLFDGVKEAYVTIAL 150

Query: 159 PDMGSF-----RKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +   +         A   A V+++       + A++I+ L++ ++P + + +V+V D  
Sbjct: 151 GETSKYALSEDDAQEASAQAVVVMKDGGSPTEEQAKSIQLLISRSIPGMVISNVSVFDGN 210

Query: 214 GKLLTANEMERNILG--KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           GK ++ +  E +I     +  I + I+ +I   +   L    G  N R +V   +NMD  
Sbjct: 211 GKEVSTDSGEEDINSGKTAEEISKLIEDQIAAKVMNVLGPVYGNGNVRVSVKGTVNMDKL 270

Query: 272 QIREIVYD-------PDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
                VY+        D     S                     E N             
Sbjct: 271 IRESTVYNVPEKIDENDKTGLTSEESIYREYSGNGQTASGVAGSEANADIPQYNAGGAAG 330

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSY 384
                        Y +N        +   LE L+++VVVN              G     
Sbjct: 331 DNSAYGSSSLNRKYLLNQIKEQGQINPGSLENLTVSVVVNGN------------GFGTMT 378

Query: 385 LAEINKIVSAATGI-NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINAL 443
           + +I  +   A GI  + R + IT  +  F    +          ++  +         L
Sbjct: 379 IDDIRNLAGNAAGIAQADRAEKITAVAAPFYTIDVPKQPDEP---VETGANGILVNQWIL 435

Query: 444 VFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDS 503
           +  +  + +  L +  + R      A    +                T     +   L  
Sbjct: 436 IAALAGVFLLLLIIILVVRHRRKKKALMENMEDLEDSQEDVPIIPEFTKEPDEEREILVP 495

Query: 504 SNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551
                                 +    +    E N E  A++L+ W  
Sbjct: 496 EEDRG----------------AELRESVREFAEQNPEISAQLLKTWLN 527


>gi|224531746|ref|ZP_03672378.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116]
 gi|224511211|gb|EEF81617.1| flagellar M-ring protein FliF [Borrelia valaisiana VS116]
          Length = 569

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 95/589 (16%), Positives = 197/589 (33%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   I+ F+             L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGLSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPIHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL+  L VD F  + V  +L+   + I    Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETIESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLG---------RSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G         +   +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWSFVYDEKGNFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +   +   +  D++  
Sbjct: 475 IASIIFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D    +  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|289433991|ref|YP_003463863.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170235|emb|CBH26775.1| flagellar M-ring protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 547

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 89/575 (15%), Positives = 206/575 (35%), Gaps = 51/575 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNR 62
           + ++   +    +  +       ++ +   ++      ++N+P  +  LY  L  +   +
Sbjct: 1   MAKIKTMYSKLKNWHK------GAIFVGLFVVVTVFLLYLNTPKTEITLYKNLSETSQQQ 54

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L++  +D+ +  +G+ I V   +    R   A  G+P +    G ++    +S G 
Sbjct: 55  VTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADLGIPYTG-QDGNDILLN-SSLGA 111

Query: 123 TS----FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---PTASV 175
           +       +++     LE EI ++  +   + +A V + +P+  S  +  ++      ++
Sbjct: 112 SEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEEASQKGSAAVTL 169

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGKSL 231
             +       +    I+  V+AAVPN+   DV ++D+   +++  +       +     +
Sbjct: 170 KTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKNEV 229

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
            I  AI   ++ +I   L++   +DNFR      +N D  +       P+    RS +  
Sbjct: 230 DIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQKD 288

Query: 292 KDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                S+ S   +      N        +     +   ++K  E +NYE+++        
Sbjct: 289 TSTDTSKGSTNTTESGTAANADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIKKH 348

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS---------- 400
              L + ++ V V++  L       A+  K     A +   ++   G             
Sbjct: 349 P-ALAKTNVVVWVDQQALNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEGTF 407

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           + GD +TI  + FL+NQ         +           +            + F  + A 
Sbjct: 408 QNGD-VTIMPIQFLDNQAPVEKDTGKTPEPASKAWIWWLAGG---------LLFAIIAAG 457

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
              + I   +K ++             A    ++P D+   +            L++R  
Sbjct: 458 IIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVVPEDHPDFNFQTDAFHLSEPELKAR-- 515

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               +    +L  M + +  R A +++KW     E
Sbjct: 516 ---KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 547


>gi|225552378|ref|ZP_03773318.1| flagellar M-ring protein FliF [Borrelia sp. SV1]
 gi|225371376|gb|EEH00806.1| flagellar M-ring protein FliF [Borrelia sp. SV1]
          Length = 569

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 193/589 (32%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   I+  +    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D+ G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNRGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL+  L VD F  + V  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G             +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREIDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +       +  D++  
Sbjct: 475 IASIVFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D    +  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|195941355|ref|ZP_03086737.1| flagellar MS-ring protein [Borrelia burgdorferi 80a]
 gi|224533205|ref|ZP_03673805.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23]
 gi|226320592|ref|ZP_03796152.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805]
 gi|224511932|gb|EEF82333.1| flagellar M-ring protein FliF [Borrelia burgdorferi WI91-23]
 gi|226234011|gb|EEH32732.1| flagellar M-ring protein FliF [Borrelia burgdorferi 29805]
 gi|312149702|gb|ADQ29773.1| flagellar M-ring protein FliF [Borrelia burgdorferi N40]
          Length = 569

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 194/589 (32%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   I+  +    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL+  L VD F  + V  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRSEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G             +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREIDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +       +  D++  
Sbjct: 475 IASIVFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D    +  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|111115116|ref|YP_709734.1| flagellar MS-ring protein [Borrelia afzelii PKo]
 gi|216264082|ref|ZP_03436076.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1]
 gi|110890390|gb|ABH01558.1| flagellar basal-body rod protein [Borrelia afzelii PKo]
 gi|215980126|gb|EEC20948.1| flagellar M-ring protein FliF [Borrelia afzelii ACA-1]
          Length = 569

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/589 (16%), Positives = 196/589 (33%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   I+ F+    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL   L VD F  + V  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDTALGKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLG---------RSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G         +   +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKMDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +       +  D++  
Sbjct: 475 IASIIFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D   ++  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|15594636|ref|NP_212425.1| flagellar MS-ring protein [Borrelia burgdorferi B31]
 gi|216264746|ref|ZP_03436738.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a]
 gi|218249820|ref|YP_002374814.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7]
 gi|221217640|ref|ZP_03589108.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a]
 gi|223888733|ref|ZP_03623324.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b]
 gi|224533718|ref|ZP_03674306.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a]
 gi|225549084|ref|ZP_03770059.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a]
 gi|225550193|ref|ZP_03771153.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a]
 gi|226321609|ref|ZP_03797135.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26]
 gi|3915695|sp|Q44912|FLIF_BORBU RecName: Full=Flagellar M-ring protein
 gi|1165275|gb|AAA85614.1| FliF [Borrelia burgdorferi]
 gi|1196318|gb|AAB51410.1| flagellar basal body rod protein [Borrelia burgdorferi]
 gi|2688175|gb|AAC66657.1| flagellar basal-body rod protein (fliF) [Borrelia burgdorferi B31]
 gi|215981219|gb|EEC22026.1| flagellar M-ring protein FliF [Borrelia burgdorferi 156a]
 gi|218165008|gb|ACK75069.1| flagellar M-ring protein FliF [Borrelia burgdorferi ZS7]
 gi|221192317|gb|EEE18536.1| flagellar M-ring protein FliF [Borrelia burgdorferi 72a]
 gi|223885549|gb|EEF56648.1| flagellar M-ring protein FliF [Borrelia burgdorferi 64b]
 gi|224513011|gb|EEF83374.1| flagellar M-ring protein FliF [Borrelia burgdorferi CA-11.2a]
 gi|225369305|gb|EEG98758.1| flagellar M-ring protein FliF [Borrelia burgdorferi 118a]
 gi|225370310|gb|EEG99748.1| flagellar M-ring protein FliF [Borrelia burgdorferi 94a]
 gi|226232798|gb|EEH31551.1| flagellar M-ring protein FliF [Borrelia burgdorferi Bol26]
 gi|312147990|gb|ADQ30649.1| flagellar M-ring protein FliF [Borrelia burgdorferi JD1]
          Length = 569

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 194/589 (32%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   I+  +    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILALVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL+  L VD F  + V  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSVDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G             +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREIDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +       +  D++  
Sbjct: 475 IASIVFSLLILVFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D    +  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQSNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|224534391|ref|ZP_03674969.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S]
 gi|224514493|gb|EEF84809.1| flagellar M-ring protein FliF [Borrelia spielmanii A14S]
          Length = 569

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 196/589 (33%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   ++ F+             L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVVLAFIFLIGLSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYILSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKESQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKIEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL   L VD F  + +  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDSALGKVLSVDRFMIARINVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNEY 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLG---------RSADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G         +   +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGNFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFREMDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +   +   +  D++  
Sbjct: 475 IASIIFSLLILMFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDSGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D   ++  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|167770218|ref|ZP_02442271.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM
           17241]
 gi|167667540|gb|EDS11670.1| hypothetical protein ANACOL_01561 [Anaerotruncus colihominis DSM
           17241]
          Length = 530

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/565 (17%), Positives = 189/565 (33%), Gaps = 46/565 (8%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEV 57
           M   I D + +     T L R + +I  S     +++       +N P     L+  +  
Sbjct: 1   MNEKIKDGVTKVKTFWTGLPRKKKIIFTSSAAGIVVIAAVVALILNRPSGNQVLFPDMTR 60

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            +  ++   L +  +   I+ +G  + VP+     A   +AAQG P S  N  Y+ F   
Sbjct: 61  EESQQVYAKLQDMGVQAEINRDGQVV-VPTEDWDNAIFEMAAQGYPKSEPN--YDFFLSN 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG-----ARPT 172
           + +  + F Q        E  + + +    GI +A V   +P+   +         +   
Sbjct: 118 SGWTKSEFEQRQVLKMQAEDRMRQILMGQDGIESADVSFSIPETSDYIWDQNNKEESTAA 177

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGK 229
            ++ +R       +  +A+++L A ++PNL   +V V+D+   +      +        K
Sbjct: 178 ITIKMRKGAELSPERVQAVKNLAAYSIPNLTADNVVVVDAATGVQMEAADDESASMFSDK 237

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            L   + I   IE NI + L+   GVD   +    EL+ D  +       P+   +  + 
Sbjct: 238 RLEFERQIARGIEDNIIRILSPRYGVDGVTAVARVELDYDKMKTETRQLTPEDTGKGVMT 297

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
             ++            +  E+N   V      +      T       +Y+I         
Sbjct: 298 HFEEQFSQNGQVAAEGLVGEENNTDVPKYPNQVGAGDGTTSDYSNSIDYDIGYVLTQIEK 357

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               L+  ++ VVVN            D    D    E+  ++S +  I       I++T
Sbjct: 358 GEPILKSATVGVVVN------------DSAFDDRKKEELTDLISKSVNIQPEN---ISVT 402

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++D+ E +                     +I     L+  +L+  + L   RR  N   A
Sbjct: 403 NLDYPEPET-QQTGGAGEGDGAAGNSILPIIGVGALLLLLILIPIILLLLRRRKKNKVHA 461

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +  +          +   +    +   N AL S N    +  +                
Sbjct: 462 AEQALIDAEKERQAQMEREIAEHKLMLQNEALASKNVKEDAIMQE--------------- 506

Query: 530 RLLHMIEINEERFAKILRKWARSEI 554
            +    E N E  A ++    R + 
Sbjct: 507 -VRTFAEQNPEITANLISSMLREDD 530


>gi|51598551|ref|YP_072739.1| flagellar MS-ring protein [Borrelia garinii PBi]
 gi|51573122|gb|AAU07147.1| flagellar basal-body rod protein [Borrelia garinii PBi]
          Length = 569

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 195/589 (33%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +               + + L  +I   I+ F+    F        L+  +E+ D   
Sbjct: 5   FTNFFASAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL+  L +D F  + V  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G             +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +       +  D++  
Sbjct: 475 IASIMFSLLILAFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D   ++  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|219685754|ref|ZP_03540565.1| flagellar M-ring protein FliF [Borrelia garinii Far04]
 gi|219672693|gb|EED29721.1| flagellar M-ring protein FliF [Borrelia garinii Far04]
          Length = 569

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 196/589 (33%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   I+ F+    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL+  L +D F  + V  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G             +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGVWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +       +  D++  
Sbjct: 475 IASVIFSLLILAFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D   ++  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|167750730|ref|ZP_02422857.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702]
 gi|167656409|gb|EDS00539.1| hypothetical protein EUBSIR_01708 [Eubacterium siraeum DSM 15702]
          Length = 542

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 91/566 (16%), Positives = 208/566 (36%), Gaps = 42/566 (7%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+L  F+       +SL +   + + + + V I+  +     +N   Y  +Y  L+  
Sbjct: 1   MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60

Query: 59  DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           + +++  A++E  I D ++  +G SISVPS      R+ L+ QG P S+ N  +++++  
Sbjct: 61  ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTA 173
                T   +++ +++ L+  + + I +IS +  + V I MP+  ++         R + 
Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177

Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKS 230
            + ++          E I  LV  ++P L+  ++++LDS GKLL+       E  +    
Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERS 287
           L+  + +Q  ++  +N  L            V    +    +       V +  +     
Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYKDYTINVNVKLNYDNSKSEYTIYTPSVAEDGTSGGMI 297

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
              +K+            V    N     +   +      +   +        +NT+   
Sbjct: 298 ESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNTEIRQ 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
              + Y +++++ AV V++  + E                ++ ++++ A G +      +
Sbjct: 358 LEKNGYSVDKITAAVTVDQINMLEAD------------KEQLREVIAFAIGADVAN---V 402

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           T+ +  F+ N    +     +     S  +   I  L+ L        L L  L      
Sbjct: 403 TVANYPFVINGNNGTNGNGNTINRGGSVDWTVYIILLLGL--------LVLALLIVAILT 454

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
            +AKK +       +    ++A                  D   + ++L    +   S  
Sbjct: 455 SNAKKKKRAKARAKAAAAQAAAAQAAQESAALSFEPQPQPDEEFNIQHLDDYDDESKSAV 514

Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552
               +      N +  A+++R   ++
Sbjct: 515 LKKEIKDFSRTNPDVVAQLIRSMMKN 540


>gi|225569979|ref|ZP_03779004.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM
           15053]
 gi|225161449|gb|EEG74068.1| hypothetical protein CLOHYLEM_06074 [Clostridium hylemonae DSM
           15053]
          Length = 536

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 101/579 (17%), Positives = 195/579 (33%), Gaps = 61/579 (10%)

Query: 1   MA-ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD 59
           M  I  +L Q         +   +I  +  +  I   +     +N   Y  L+  +   +
Sbjct: 1   MDKIKLKLGQLKDFLGKYSKKTKIIAGTAAVAVIAAAVIIALVLNHKDYTTLFTGVTEEE 60

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
             +I   L E+ +DF+  +NG  I V   +  K R  L  +G P S     Y++F + + 
Sbjct: 61  ATKIIGKLQESGVDFQYKENGD-ILVDEKVADKTRADLVYEGYPKSGFT--YDVFTENSG 117

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-----RKIGARPTAS 174
              T   +E  ++  L+  I  TI+   G+  A+V+I + +   +      +    P+AS
Sbjct: 118 GMTTDSEKETYKLYDLQDRIGATIRFFDGVKDAKVNIALKEEQKYVLEEDGEKAGTPSAS 177

Query: 175 VMIRAINPSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL- 231
           V++   +        A AI+ LVA +VP ++M +V V D  G  ++ N+   +  G +  
Sbjct: 178 VVVTMESGESPSEKQAAAIQRLVAKSVPEMEMENVAVFDGNGIEVSVNKDGSSASGSNAT 237

Query: 232 -SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ------IREIVYDPDSKV 284
             I Q I+ +I   +   L +F G +N R +   ++NM+               D   K 
Sbjct: 238 EEIAQLIEMQISKKVINVLGSFYGAENIRVSARGKVNMEKVIRESTTYTTPEKIDEKDKT 297

Query: 285 ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKS 344
                 S            + V   +      +       +   +  +    +Y +N   
Sbjct: 298 GIVSSESTTKDTVNGGGAGTGVAGSETNADTPEYNAGTDNNASGSASESATRDYLVNQVK 357

Query: 345 IATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI-NSRRG 403
                D   LE L+++V +N                    + E+  +V  ATGI  + R 
Sbjct: 358 EQGELDTGVLEDLTVSVAINGKNAGN------------ISMNELRDLVGNATGIAAADRL 405

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
           + ITI +  F E           + +  +  +                            
Sbjct: 406 EKITIVNAPFYEENADKDTKEVSNILKNIKDNLP-------------------------- 439

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
             +            IL+   I       +   + +             +     + +  
Sbjct: 440 --VIAVAAVIAVVIIILAVILIRRRRKRRMEEEEELEDLLIPDVTEEIRKPEILNLKNEK 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR-SEIEDRYTQH 561
           S++    +    + N E  A+++R W    E + R    
Sbjct: 498 SRELRENVRDFADENPEISAQMIRNWLNGGEQDGRKADE 536


>gi|219684584|ref|ZP_03539527.1| flagellar M-ring protein FliF [Borrelia garinii PBr]
 gi|219671946|gb|EED29000.1| flagellar M-ring protein FliF [Borrelia garinii PBr]
          Length = 569

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 196/589 (33%), Gaps = 69/589 (11%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSD--- 59
             +  +            + + L  +I   I+ F+    F        L+  +E+ D   
Sbjct: 5   FTNFFVSAKGIFKKASTVQKIALGLIIFFVILAFVFLIGFSTKSQSIALF-GVEIKDQYL 63

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           ++RIS  L   N+ + +S +G        +  K R  L  + L     +  + LFD ++ 
Sbjct: 64  LDRISQRLDRENVKYFLSSDGRIYLDDEKLAKKMRAILVREELVPVHMDP-WALFD-IDR 121

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
           + +T F + I   R++   + + I ++  + A  V++VMP+   F++      ASV I  
Sbjct: 122 WTITDFERSINLRRSITRAVEQHIVALDDVDAVSVNLVMPEKALFKEAQEPVKASVRITP 181

Query: 180 INPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKS 230
              S      K  E +  L+  A+  L+  ++ ++D++G +L            ++  K 
Sbjct: 182 RPGSDIITNRKKVEGLVKLIQYAIEGLESDNIAIVDNSGTILNDFSNLDGIDRIDLAEKE 241

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------- 280
             +    +  +   I+ AL+  L +D F  + V  +L+   +      Y P         
Sbjct: 242 RKLKLKYEAMLRGEIDSALSKVLSIDRFMIARVNVKLDTSKETTESKEYAPIELQSQDPK 301

Query: 281 --------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKK 332
                         S +  K   + +   P      E N P                ++ 
Sbjct: 302 ASYNTRKVSDSTIISSQTQKKEYQGQGYSPWGPPGQEGNTPPEYQDLSD---ITGKYNES 358

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR--LTEVLGR---------SADQGKI 381
           +E  N  +N K   +  +  ++  +S+ + V+     + +  G             +   
Sbjct: 359 QEIKNVALNEKKSTSEKEPARIVGVSLGIFVDGIWNFVYDEKGDFVIENGMRKREYKPMA 418

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
              +  I  ++ ++      RGD+IT+ ++ F     F             S  F   + 
Sbjct: 419 LEEIKNIEDVLQSSFEYKPERGDSITVRNISFDRMNEFRKIDENY----FASERFKYFLF 474

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIAL 501
               +   L++ F    A+ R        + E   K        +       +  D++  
Sbjct: 475 IASVMFSLLILAFTIFFAISRELERRRRLREEELAKQAHLRRQQALMDGGDDIGVDDVVG 534

Query: 502 DSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                D   ++  L                  +     E  AK++R W 
Sbjct: 535 GIREGDELQNNAEL------------------LAREKPEDVAKLIRTWL 565


>gi|291558199|emb|CBL35316.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium siraeum V10Sc8a]
          Length = 541

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 93/566 (16%), Positives = 207/566 (36%), Gaps = 42/566 (7%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+L  F+       +SL +   + + + + V I+  +     +N   Y  +Y  L+  
Sbjct: 1   MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60

Query: 59  DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           + +++  A++E  I D ++  +G SISVPS      R+ L+ QG P S+ N  +++++  
Sbjct: 61  ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR--KIGARPTASV 175
                T   +++ +++ L+  + + I +IS +  + V I MP+  ++        P  SV
Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177

Query: 176 MIRAI--NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKS 230
            +             E I  LV  ++P L+  ++++LDS GKLL+       E  +    
Sbjct: 178 KLDLKNDAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIRE---IVYDPDSKVERS 287
           L+  + +Q  ++  +N  L            V    +    +       V +  +     
Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYKDYTINVNVKLNYDNSKSEYTIYTPSVAEDGTSGGMI 297

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
              +K+            V    N     +   +      +   +        +NT+   
Sbjct: 298 ESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTITGDGDNQYYYQNSITVKRLVNTEIRQ 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
              + Y +++++ AV V++  + E                ++ ++++ A G +      +
Sbjct: 358 LEKNGYSVDKITAAVTVDQVNMLEAD------------KEQLREVIAFAIGADVAN---V 402

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           T+ +  F+ N    +     +     S  +   I  L+ L        L L  L      
Sbjct: 403 TVANYPFVINGNNGTNGGGNTINRGGSVDWTVYIILLLGL--------LVLALLIVAILT 454

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
            +AKK +       +    ++A                  D   + ++L    +   S  
Sbjct: 455 SNAKKKKRAKARAKAAAAQAAAAQAAQESAALSFEPQPQPDEEFNIQHLDDYDDESKSAV 514

Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552
               +      N +  A+++R   ++
Sbjct: 515 LKKEIKDFSRTNPDVVAQLIRSMMKN 540


>gi|238924170|ref|YP_002937686.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Eubacterium rectale ATCC 33656]
 gi|238875845|gb|ACR75552.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Eubacterium rectale ATCC 33656]
 gi|291524899|emb|CBK90486.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium rectale DSM 17629]
 gi|291529040|emb|CBK94626.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium rectale M104/1]
          Length = 533

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 94/564 (16%), Positives = 194/564 (34%), Gaps = 47/564 (8%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           AILD++  ++K        +  +L S++ V I+  +     ++ P    L      S+ +
Sbjct: 7   AILDKITAWWKKFN---TKQRSVLISIVAVVIVALVILGVVISRPTQVELVEAQSASEAS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L + NI + +        V  S    A + L   G+P+ + +          SF 
Sbjct: 64  TIKGVLEDNNISYEVDSK-LVFFVNKSDEVNAIMALGDNGIPAQAYSIDNV---TDGSFS 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG-SFRKIGARPTASVMIRAI 180
            T   ++      LE ++   ++  S +  A V I MPD   +  K     TA+V +   
Sbjct: 120 TTEADKQKKYQVYLEDKLKDHLEKQSYVNEASVDITMPDKDGTILKSKEEATAAVTLGLK 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQAI 237
           +      A AI  LVA A+ N     +T++D    +L +        G     LS  Q +
Sbjct: 180 DSITDDQAYAIARLVATALGNDTTKGITIIDKKANVLYSGGDSDTSAGLATSQLSYKQKL 239

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD-PDSKVERSIRLSKDAQR 296
           + +++  + K L +     N    +  +++    +  +  Y  PD + +  +  S+   +
Sbjct: 240 EEQVKNEVKKTLESSNIFSNIEVGMNLDIDFSKTETAQKNYTLPDGQTDTGLLDSESNYQ 299

Query: 297 S-ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
           S  T+   +    + N    +        S   +   +    Y  + K   + +D   ++
Sbjct: 300 SDATNGQAAVPGTDSNSDDTTYTTQDGTPS--ESSITDNDKKYLNDEKITTSKNDGGSIK 357

Query: 356 RL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               SI VV  + ++ +      +    D+   E     +    +     D +T      
Sbjct: 358 YDSSSITVVATRYKVYDESTLEKNGKLKDTSWEEYKAKHADPVKVTDVDQDLVTSVQNAT 417

Query: 414 LENQLFNSGTVQVSFMDILS--RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
             +Q+      Q  F+D  S  R  + ++   + ++   L+ F+   + R        ++
Sbjct: 418 GISQISFLVYEQPEFVDKASGVRSLSDILQIAITVLIFALLGFVVFKSTRSSEEEPKEEE 477

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
             V      +                                     I      ++ L +
Sbjct: 478 LSVDSLLEQTAENNEP----------------------------LEDIGYNEKTETRLLI 509

Query: 532 LHMIEINEERFAKILRKWARSEIE 555
              ++ N E  A++LR W   + E
Sbjct: 510 EKFVDENPEAAAQLLRNWLNEDWE 533


>gi|291532064|emb|CBK97649.1| flagellar basal-body M-ring protein/flagellar hook-basal body
           protein (fliF) [Eubacterium siraeum 70/3]
          Length = 542

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/566 (16%), Positives = 208/566 (36%), Gaps = 42/566 (7%)

Query: 3   ILDQLLQFF----KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+L  F+       +SL +   + + + + V I+  +     +N   Y  +Y  L+  
Sbjct: 1   MKDKLSAFWSGFKDKWSSLAKNLRIFIITAVSVVIVAAIVLAIVLNQKGYTAIYTGLDSE 60

Query: 59  DVNRISVALSEANI-DFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
           + +++  A++E  I D ++  +G SISVPS      R+ L+ QG P S+ N  +++++  
Sbjct: 61  ESSQVVSAINELGITDVKMGTDG-SISVPSDQADNVRMQLSIQGYPKSTFN--FDVWNSG 117

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTA 173
                T   +++ +++ L+  + + I +IS +  + V I MP+  ++         R + 
Sbjct: 118 IGIWSTDTEKKVLQIQQLQTHLMKAINTISAVKNSYVIITMPENSNYVISTDSEEPRVSV 177

Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE---MERNILGKS 230
            + ++          E I  LV  ++P L+  ++++LDS GKLL+       E  +    
Sbjct: 178 KLDLKNGAQLTSDQVEGIYALVLNSLPGLERENISILDSDGKLLSGENTTVEEDVLYQSR 237

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ---IREIVYDPDSKVERS 287
           L+  + +Q  ++  +N  L            V    +    +       V +  +     
Sbjct: 238 LNFQEQMQSLLKSQLNDTLKKLYKDYTINVNVKLNYDNSKSEYPIYTPSVAEDGTSGGMI 297

Query: 288 IRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
              +K+            V    N     +   +      +   +        +NT+   
Sbjct: 298 ESSTKNEGWGGIGSLSGVVGTTSNSDISPNYPTIKGDDDNQYYYQNSITVKRLVNTEIRQ 357

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTI 406
              + Y +++++ AV V++  + E                ++ ++++ A G +      +
Sbjct: 358 LEKNGYSVDKITAAVTVDQINMLEAD------------KEQLREVIAFAIGADVAN---V 402

Query: 407 TITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNI 466
           T+ +  F+ N    +     +     S  +   I  L+ L        L L  L      
Sbjct: 403 TVANYPFVINGNNGTNGNGNTINRGGSVDWTVYIILLLGL--------LVLALLIVAILT 454

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
            +AKK +       +    ++A                  D   + ++L    +   S  
Sbjct: 455 SNAKKKKRAKARAKAAAAQAAAAQAAQESAALSFEPQPQPDEEFNIQHLDEYDDESKSAV 514

Query: 527 SDLRLLHMIEINEERFAKILRKWARS 552
               +      N +  A+++R   ++
Sbjct: 515 LKKEIKDFSRTNPDVVAQLIRSMMKN 540


>gi|289678988|ref|ZP_06499878.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5]
          Length = 395

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 136/410 (33%), Gaps = 54/410 (13%)

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN--ILGKSLSIVQAIQHE 240
                  AI +LVA +VP L    +TV+D  G LL+         + GK     + ++  
Sbjct: 2   REPSQVLAIINLVATSVPELSKSQITVVDQKGALLSDQAENSELTMAGKQFDYSRRMEGM 61

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   +   L   LG D +++ V A ++    +     ++PD    RS +   + QRS +S
Sbjct: 62  LTQRVQNILQPILGNDRYKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSS 120

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSL---------------------------------- 326
                     N P           +                                   
Sbjct: 121 SSGGVPGALSNQPPGPATAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAP 180

Query: 327 -ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSY 384
                + +   N+E++     T     +L RLS+AVVV+    T    G  +      + 
Sbjct: 181 YPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAAD 240

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           LA   ++V  A G ++ RGD++++ ++ F   +                  F  ++   V
Sbjct: 241 LARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAV 296

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
            ++  L++ F  L  +         K+    G               G + ND ++L   
Sbjct: 297 GVIFILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGP 353

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +            +         +  ++  +  R A+++++W  ++ 
Sbjct: 354 QSILLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 395


>gi|16802755|ref|NP_464240.1| flagellar MS-ring protein [Listeria monocytogenes EGD-e]
 gi|47095279|ref|ZP_00232890.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498795|ref|ZP_03667144.1| flagellar MS-ring protein [Listeria monocytogenes Finland 1988]
 gi|224501982|ref|ZP_03670289.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-561]
 gi|254829370|ref|ZP_05234057.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165]
 gi|254830296|ref|ZP_05234951.1| flagellar MS-ring protein [Listeria monocytogenes 10403S]
 gi|254900051|ref|ZP_05259975.1| flagellar MS-ring protein [Listeria monocytogenes J0161]
 gi|254911396|ref|ZP_05261408.1| flagellar MS-ring protein [Listeria monocytogenes J2818]
 gi|254935723|ref|ZP_05267420.1| flagellar MS-ring protein [Listeria monocytogenes F6900]
 gi|255028428|ref|ZP_05300379.1| flagellar MS-ring protein [Listeria monocytogenes LO28]
 gi|284801043|ref|YP_003412908.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578]
 gi|284994185|ref|YP_003415953.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923]
 gi|16410102|emb|CAC98791.1| lmo0713 [Listeria monocytogenes EGD-e]
 gi|47016350|gb|EAL07272.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601784|gb|EEW15109.1| flagellar MS-ring protein [Listeria monocytogenes FSL N3-165]
 gi|258608307|gb|EEW20915.1| flagellar MS-ring protein [Listeria monocytogenes F6900]
 gi|284056605|gb|ADB67546.1| flagellar MS-ring protein [Listeria monocytogenes 08-5578]
 gi|284059652|gb|ADB70591.1| flagellar MS-ring protein [Listeria monocytogenes 08-5923]
 gi|293589334|gb|EFF97668.1| flagellar MS-ring protein [Listeria monocytogenes J2818]
          Length = 550

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/540 (15%), Positives = 181/540 (33%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAEPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +   L+F V    +    +   R+    +  +  E                      
Sbjct: 445 IWWLAGGLLFAVIAAGIITYIILLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQ 504

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            D   L                       +    +L  M + +  R A +++KW     E
Sbjct: 505 TDAFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|255025681|ref|ZP_05297667.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-003]
          Length = 550

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 84/540 (15%), Positives = 181/540 (33%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSAA-------------TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEAAAAPIFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAEPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +   L+F V    +    +   R+    +  +  E                      
Sbjct: 445 IWWLAGGLLFAVIAAGIITYIILLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQ 504

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            D   L                       +    +L  M + +  R A +++KW     E
Sbjct: 505 TDAFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|229160710|ref|ZP_04288702.1| Flagellar M-ring protein fliF [Bacillus cereus R309803]
 gi|228622725|gb|EEK79559.1| Flagellar M-ring protein fliF [Bacillus cereus R309803]
          Length = 524

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 80/561 (14%), Positives = 195/561 (34%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKIRNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   L++      N        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKPEEVSVIDSKKGLISKGADAANTNSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVTVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F       +   +      L+      I   +  +  L+  FL     ++     +  
Sbjct: 405 VQF---DQPKAEGPKKQEESGLNWWLIGGITGGLLALVGLVWFFLARRKKKKEEEEYEEY 461

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             E    +                     +               +  +        D +
Sbjct: 462 LVEDEVAA--------------------SSESIMEIPEEKIEPEPKPELEKPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|317133489|ref|YP_004092803.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3]
 gi|315471468|gb|ADU28072.1| flagellar M-ring protein FliF [Ethanoligenens harbinense YUAN-3]
          Length = 528

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 90/559 (16%), Positives = 190/559 (33%), Gaps = 43/559 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +        +  T L     ++L  V++  I+  +AA   +    Y+ +Y  L  ++  +
Sbjct: 5   LKKIAAGLNRFWTGLSAKVRVLLVIVVVGAIVGAVAANMLLTQTQYELIYSGLSDAESGQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L    I +++  +G+SI V  S+  +AR+ LA  G P ++ N  Y +++  N++ +
Sbjct: 65  IVADLQTRGIKYKL--DGNSIYVDKSVADQARMELAVDGYPQTTLN--YSVYESGNNWAM 120

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR---- 178
           T   ++   +  ++  +  TIQ+I G+  A V I   +  ++     + + +  ++    
Sbjct: 121 TDKDKQQLALYQIQDRLQSTIQTIPGVKNAIVTITQGNDDTYVLESDKVSPTASVKLTLT 180

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME-RNILGKSLSIVQAI 237
                  K    I ++V+ +V  L   +VTV DS G  L     +        L++   +
Sbjct: 181 PGTTLTQKQVTGIVNIVSHSVSGLSADNVTVADSDGNTLNNTGDDLSGATSDQLALRVQV 240

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY---DPDSKVERSIRLSKDA 294
           + EI   +   L    G  N + +  A L+  T       Y   D       S+  S   
Sbjct: 241 ESEIRQKVLSVLGPVYGAANVQVSPAAILDFTTTTTNTTTYSGPDNGQGFPSSVSSSITV 300

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
                +     V V    P                 ++   + Y  N            +
Sbjct: 301 SGGTGTASGGTVGVNGAQPAYPTSGSQTSSLSGTVTQQNTNTTYLYNQVQQQVQDKGGSI 360

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           + L+I +++N                      ++ + V+ A G   +    + +  M F 
Sbjct: 361 KNLTIGIMLNSANQAIAGLDPT----------QVQQFVAYAVGTAPQN---VNVQLMRFA 407

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
            +   +SG    +          T++         +++  L L  L R      A + E 
Sbjct: 408 SSSAVSSGGKGSASGTSGLGSPTTLLTIAGIGAAAVVLILLLLFFLLRGRKRKKALQEEA 467

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
             ++  +                        +     S  L  +++         ++   
Sbjct: 468 EAQAEQAQA------------------AQPVKPGPPMSAELAQKLDEMPDNPVKKQIEDF 509

Query: 535 IEINEERFAKILRKWARSE 553
            +   E  A++LR W +  
Sbjct: 510 TDSKPELVAQLLRNWLKDN 528


>gi|227873553|ref|ZP_03991796.1| flagellar M-ring protein FliF [Oribacterium sinus F0268]
 gi|227840599|gb|EEJ50986.1| flagellar M-ring protein FliF [Oribacterium sinus F0268]
          Length = 557

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 95/574 (16%), Positives = 199/574 (34%), Gaps = 51/574 (8%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRI 63
           + +L + +++ ++  +  + I+A + +V I + +          Y  L+  L   +  +I
Sbjct: 1   MQKLKEMWQNLSAKSKKLLGIIAGITVVVIAVAVFLLARGQKTEYQTLFSSLSQGEAQQI 60

Query: 64  SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLT 123
              L E N+ +       ++ VPS  V   R  L ++G P S     Y+++   +    T
Sbjct: 61  VSLLQEQNVPYLYDGKSGALKVPSESVDTLRAQLLSKGYPKSGFA--YDMYIGNSGLMTT 118

Query: 124 SFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRA- 179
              ++   +  L+  +  TI+   G+  A+V I      ++    +   + +ASV++   
Sbjct: 119 ESDKKQYTLYDLQDRLGATIRLFDGVRDAKVTIAEGTDQTYAIEDENPVQASASVVVTME 178

Query: 180 -INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG---KSLSIVQ 235
                  K+AEAI++L+A +V  ++  +V+V D+      A +   +  G      ++  
Sbjct: 179 EGQSLSEKNAEAIKNLIARSVKGMNFTNVSVFDAGTMEEVAADAGDSASGSGTSMANLTT 238

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK--- 292
            +++ I  NI + L    G +N   +V   LNM         Y    K E + +      
Sbjct: 239 TVENNIANNIKRVLGKIYGGENLAVSVKGTLNMAKLIQENTQYTVPEKTEATDKRGLLSN 298

Query: 293 -----DAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIA 346
                +   +           + N        +     + +N         +  N     
Sbjct: 299 EEVAGENAGNSGENAAGVAGADANADTPRYTTQNGTATTTDNYSNSSATREWLYNVLKEQ 358

Query: 347 TTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-RRGDT 405
                  LE  S+A+V+N    +                  +  +V+ A GI      D 
Sbjct: 359 KEIAPGVLEDASVAIVINTDDNSIPESD-------------LINLVADAAGIKRDEAADK 405

Query: 406 ITIT-SMDFLENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRR 462
           ITI  S++    Q              L   F    +I A V     +L+  + +   R+
Sbjct: 406 ITILRSLNKTAVQQTTEEKKPAEEPKTLLNQFPLWALIGAAVSAFLLILILLILILRGRK 465

Query: 463 LHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSY 522
              +    + E+   + LS    +  +T     +++                        
Sbjct: 466 KKKLKKLAQEEMENAAALSVEQPTDEITPVEEVDEDELTAEGKMAHGMK----------- 514

Query: 523 VSKQSDLRLLHMIEINEERFAKILRKWARSEIED 556
                   +    + N +  AK+++ W R E ++
Sbjct: 515 ----LKKSIGEFTDQNPQVVAKLIQSWMREEEQN 544


>gi|255594469|ref|XP_002536098.1| Flagellar M-ring protein, putative [Ricinus communis]
 gi|223520885|gb|EEF26286.1| Flagellar M-ring protein, putative [Ricinus communis]
          Length = 263

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 126/264 (47%), Gaps = 7/264 (2%)

Query: 26  ASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISV 85
             V+ + I   +    + +   Y  ++   E    + +   L   ++ +RI  +   + V
Sbjct: 1   MLVLAIGITAAVMLYMWNDQAGYKPVFGAHEKVAASDMMSVLDAEHVPYRIHPDSGQVMV 60

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P+  +GK R+ LAA+G+ ++   +G EL DK +  G++ F+Q++   R LEGE+A++I +
Sbjct: 61  PTGQLGKVRMLLAAKGV-TAQLPAGLELMDKNDPLGVSQFVQDVRFRRGLEGELAQSILT 119

Query: 146 ISGIVAARVHIVMPDMGSFRK---IGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           +  I +ARVH+ +    SF       +  +  V ++       +   AI ++V+ +V  L
Sbjct: 120 LDAIASARVHLAIAKSSSFVANDGDKSSASVVVAVKPGRTLSNEQIAAIVNMVSGSVAGL 179

Query: 203 DMGDVTVLDSTGKLLTANEM---ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR 259
               V+++D  G  L++        +   +  +  +  Q E+  N+   L   LG DNF+
Sbjct: 180 APARVSLVDQNGNYLSSRVDLTEGFDGAAQGDAAAKRYQDEVRTNVAGLLGPVLGADNFK 239

Query: 260 SAVVAELNMDTQQIREIVYDPDSK 283
            +V A+++ D  +  +  Y  D K
Sbjct: 240 VSVTADVDNDKVEETQEKYGADPK 263


>gi|168334480|ref|ZP_02692651.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 533

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/563 (14%), Positives = 185/563 (32%), Gaps = 41/563 (7%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            I        +  T+L   + + +       I+  +AA FF +SP    LY  L++  ++
Sbjct: 4   TITQVSNNLTERWTNLPSRQKIQIGVGAGAIIVAIIAAVFFFSSPQTAILYQNLDMEAIS 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           +I   L   NI + +  +G +I V    +  A+I L  + +P         +    NS  
Sbjct: 64  QIDEVLGANNITYELI-DGRTIQVNEEDLNTAKIILTRENVPRGDYTFYDAI---TNSMS 119

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIRAI 180
            T   +    +   + ++   +  + GI  A V + +P +  SF       +ASV++   
Sbjct: 120 TTEAEKRTKLIYLKQVDLENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLH 179

Query: 181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQH 239
                   E I  L++ AV NL + ++T+LDS   +L + +           S+  + + 
Sbjct: 180 RQISDNQIEGIARLLSNAVDNLKLENITILDSDSNVLFSGDEFGEMTASDQQSLKSSAEK 239

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI---VYDPDSKVERSIRLSKDAQR 296
           +I   +   L+     D    +    L+ D  +  +        DS+     + S+    
Sbjct: 240 DIVNKLTTLLSPIY--DEVAISPNLILDFDYFEQTKEEYTTPITDSQTGLVDQESRRNYE 297

Query: 297 SETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
           +   Q   A  ++ N+  V +       S        +   Y+ N        +   ++ 
Sbjct: 298 ATNIQDGFAPGLDPNVEDVPEYVAGNELSGNYEGGTSDII-YKHNKTLSNEIKNIGTIDY 356

Query: 357 LSIAVVVN--KGRLTEVLGRSADQGKIDSYLA-EINKIVSAATGINSRRGDTITITSMDF 413
            + +V +N  K  + +            ++   ++   V+    +     D I       
Sbjct: 357 NNSSVAINLTKYNVYDEALLEDTLPDDQTWAEFKLANDVTNILVVEQATIDAIK-MGAGL 415

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
               +           +  +     VI  ++ L    ++  + +   + +  +    + E
Sbjct: 416 ENVAVIAYEKPVFIDKEPFTLQTEDVIPYILLLALGAVIVVVMIRFRKPVEEVVTEDEFE 475

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
                 ++ P                              +    I      ++  ++  
Sbjct: 476 FEDLLPVAGPEEEEE-------------------------DSLQDIELKEVIETKAKIDK 510

Query: 534 MIEINEERFAKILRKWARSEIED 556
            I+   E  A +LR W   +  D
Sbjct: 511 FIDEKPEAVAGLLRNWLEEDWGD 533


>gi|187918165|ref|YP_001883728.1| flagellar MS-ring protein [Borrelia hermsii DAH]
 gi|119861013|gb|AAX16808.1| flagellar M-ring protein FliF [Borrelia hermsii DAH]
          Length = 568

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/597 (14%), Positives = 193/597 (32%), Gaps = 72/597 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I        KS       + +    + L  I+  +    F        L+  + + 
Sbjct: 1   MNNFITKFFASVNKSFKKASIVQRVAFGVIFLFIILALIFLVGFSTRKQGIALF-GVGIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   +++I   L   N+ + I+ +G       +   K R  L  + L     +  + LFD
Sbjct: 60  DQYLLDKIVQRLDRENVGYTITVDGKIYLSDENTSKKMRAILVREELVPVHMDP-WSLFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + +   R++   + + I ++  + A  +++VMP+   F++      ASV
Sbjct: 119 -IDRWTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226
            I     S      K  E +  L+  A+  L+  ++ ++D+ G +L            ++
Sbjct: 178 RITPKPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTILNDFSNVDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  ++  I+ AL+  L V  F  + V   L+   Q      Y P     
Sbjct: 238 AEKERKLKLKYESMLKDEIDSALSKVLSVGRFMIARVNVTLDTSRQTTESKEYAPIEIEP 297

Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
                             S ++ K     +   P      E N P        +      
Sbjct: 298 QDPKVSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDLSDIIG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377
           +++ +E  N  +N K   +  +  ++  +S+ + ++                    +   
Sbjct: 355 SNEFKEIKNVALNEKKSLSEKEPARVAGISLGIFIDGVWDFVYDESGKFVIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +   D  L  I  ++ ++      RGD+IT+ ++ F     F             +    
Sbjct: 415 KPISDEALKNITDVLQSSFEYKPERGDSITVRNIAFDRVNEFRKIDEA-----YFASEKF 469

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
             +   V L+   L+    +  +         +  E             + + +  +  D
Sbjct: 470 NFVVFAVSLIFAFLILIFTIFFIVSRELERKRRLREEEFARQAHLRRQQALMDSDDIGVD 529

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           ++      +D    +  L                  +     E  AK++R W    +
Sbjct: 530 DVVGGLREEDELQSNAEL------------------LAREKPEDVAKLIRTWIVKNV 568


>gi|119953090|ref|YP_945299.1| flagellar MS-ring protein [Borrelia turicatae 91E135]
 gi|119861861|gb|AAX17629.1| flagellar M-ring protein FliF [Borrelia turicatae 91E135]
          Length = 568

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/597 (15%), Positives = 195/597 (32%), Gaps = 72/597 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I        K        + +    + L  I+ F+    F        L+  + + 
Sbjct: 1   MNNFITKFFASVNKKFQKASMVQKVAFGVIALFIILAFIFLIGFSTKKQGVALF-GVGIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   ++RI   L   ++++ I+ +G       +M  K R  L  + L     +  + LFD
Sbjct: 60  DQYLLDRIVQRLDRESVEYIITADGKIYLSDENMSKKMRAILVREELVPVHMDP-WSLFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + +   R++   + + I ++  + A  +++VMP+   F++      ASV
Sbjct: 119 -IDRWTITDFERNVNLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQEAVKASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226
            I     S      K  E +  L+  A+  L+  ++ ++D+ G +L            ++
Sbjct: 178 RITPKPGSDIVTNRKKVEGLVKLIQYAIEGLESDNIAIVDNKGTVLNDFSNLDGIDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL+  L VD F  + V   L+   Q      Y P     
Sbjct: 238 AEKERKLKLKYESMLRDEIDSALSKVLSVDRFMIARVNVTLDTSRQTTESKEYAPIEIEP 297

Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
                             S ++ K     +   P      E N P        +      
Sbjct: 298 QDPKVSYNTRKVSDSTLLSSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDLSDIIG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377
           +++ +E  N  +N K      +  ++  +S+ + ++                    +   
Sbjct: 355 SNEFKEIKNVALNEKKSLNEKEPARIAGISLGIFIDGVWDFVYDESGNFIIENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +   D  L  I  ++ ++      RGD+I I ++ F     F          D  S    
Sbjct: 415 KPISDEALKNITDVLQSSFEYKPERGDSIAIRNVAFDRVNEFRKIDE-----DYFSTEKF 469

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
             +   V ++  LL+    +  +         +  E             + + +  +  D
Sbjct: 470 KFLIFTVSIIFALLILIFTVFFIVSRELERRRRLREEEFSRQAHLRRQQALMDSDDIGVD 529

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           ++      +D    +  L                  +     E  AK++R W    +
Sbjct: 530 DVVGGIREEDELQSNAEL------------------LAREKPEDVAKLIRTWIVKNV 568


>gi|332297609|ref|YP_004439531.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168]
 gi|332180712|gb|AEE16400.1| flagellar M-ring protein FliF [Treponema brennaborense DSM 12168]
          Length = 568

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 101/598 (16%), Positives = 210/598 (35%), Gaps = 75/598 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   +   +    +        + +IL  +I V I   +    F   P    L+  + ++
Sbjct: 1   MNEWLKKLVSSIKELWAKWTLIQKIILFGIIAVVIAALVFMLRFSAKPATVPLF-NVAIT 59

Query: 59  DVNR---ISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELF 114
           DV+    I   LS+ N++  ++  G  ISV      +  R  L  + L  ++ +  + LF
Sbjct: 60  DVSARDNILYRLSQENVEAEVNAAG-VISVKDEQTARRMRSVLVREDLVPTNVDP-WALF 117

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D    + +T F + +   R++   + + I+++  I +A V I +P+   F       TAS
Sbjct: 118 D-TERWTITDFERNVNLQRSITQMVKQHIEALDDIDSANVVITLPERTLFASDQNPTTAS 176

Query: 175 VMIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI---- 226
           V+I     S      K  + I+ L+  AV  L   ++T+ DSTG+++   E         
Sbjct: 177 VIIYPKPGSDIADNKKKIQGIQKLLLRAVEGLKEENITIADSTGRIVNDFEGMAASERVD 236

Query: 227 -LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVY------ 278
            + K   +++ ++ E   ++ K+L    G D  R   +  +++M  +Q+    Y      
Sbjct: 237 IVAKEQKLIKQLEMEYRASVLKSLQQIFGTDRVRDLNIKIDMDMSKKQVAGTEYSPIVIK 296

Query: 279 --DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
             +P++             S              PE    VE   P V            
Sbjct: 297 ADNPNTPYDDSELRDYLPISSETVTKVWTGTGYNPEGPAGVEGQNPPVYSDMS---NLYG 353

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGR------------S 375
            +++   + N  INTK          ++R++++V ++         +             
Sbjct: 354 KSEETGVKQNNVINTKEYQEEKSP-SIDRVTVSVNIDGTWRRTYDDKGQLVLNPNGTIAR 412

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                  + L+   K+V  A G N  RGD++T+ ++ +     F           I ++ 
Sbjct: 413 EYVPVDSAVLSSAAKLVQDAIGYNRNRGDSVTVQNIQYDRTAQFEEED----MAYIRAQQ 468

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
               I  ++  +  +L+ F+    + R        + E   +        +  +      
Sbjct: 469 QRKTIMLVIAGIAVVLLAFMVFRFISRELERRRRLREEEILRRNQMEREKT--LWEAEQA 526

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              + +                 +      +     + M + + E  A ++R W   E
Sbjct: 527 GMEVTMS----------------VEERHRAELQENAITMAKEHPEDVAMLIRTWLMEE 568


>gi|323174683|gb|EFZ60303.1| flagellar M-ring protein FliF [Escherichia coli LT-68]
          Length = 380

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 150/403 (37%), Gaps = 43/403 (10%)

Query: 173 ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-MERNILGKSL 231
            +V +            AI HLV++AV  L  G+VT++D  G LLT      R++    L
Sbjct: 1   MTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLTQFNTSGRDLNDAQL 60

Query: 232 SIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                ++  I+  I   L+  +G  N  + V A+L+  +++  E  Y P+    ++   S
Sbjct: 61  KYASDVEGRIQRRIEAILSPIVGKGNIHAQVTAQLDFASKEQTEEQYRPNGDESQAALRS 120

Query: 292 K---DAQRSETSQPESAVTVEQNMPHVSDRKV----------------PLPRSLENTDKK 332
           +   ++++S +  P        N P  ++                       S   + ++
Sbjct: 121 RQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNNRQQQASTTSNSGPRSTQR 180

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
            E SNYE++     T  +   ++RLS+AVVVN   L +           +  + +I  + 
Sbjct: 181 NETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLT 236

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
             A G + +RGD++ + +  F  +                      ++ A  +L+  L+ 
Sbjct: 237 REAMGFSEKRGDSLNVVNSPFNSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVA 292

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
             L   A+R            V  ++                  ++      ++D     
Sbjct: 293 WLLWRKAVRPQLTRRAEAMKAVQQQAQARE------------EVEDAVEVRLSKDEQLQQ 340

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 341 RRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWINNDHE 380


>gi|307264866|ref|ZP_07546428.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306920124|gb|EFN50336.1| secretory protein YscJ/FliF family protein [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 253

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/252 (22%), Positives = 108/252 (42%), Gaps = 14/252 (5%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
              +QL  F+       + + + L  + ++  +      + VN P+Y  LY  L + D  
Sbjct: 7   NFREQLTNFWNKF---DKKQKIQLGIIAILLFIGISLLVYIVNRPNYVVLYSDLSIKDAG 63

Query: 62  RISVALSEA-NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK-VNS 119
            +   L     I ++IS++G++I VP+    + R+ LA +G+P      G+   D   NS
Sbjct: 64  AVVEKLKTEFKIPYKISNDGTTILVPAQYKDEVRMKLATEGIPQG----GFSFQDAMNNS 119

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR----KIGARPTASV 175
              T   +    +  L+ EI  ++++I G+  A V+IV+PD  +F        A     +
Sbjct: 120 LATTDQERRQKYLYFLQNEIQNSLKTIDGVQDAIVNIVVPDQNAFVLSNTTNQATAAVML 179

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNILGKSLSIV 234
            ++          + I   V+ +V  L   +VTV+D+ GK+LTA  +          ++ 
Sbjct: 180 TLKPGVTLSSSQVKGIIDFVSKSVEGLKPENVTVIDNNGKILTAESDTTAENANTQFALQ 239

Query: 235 QAIQHEIEMNIN 246
           +  +   +    
Sbjct: 240 KKFKKTYKTAFK 251


>gi|299822289|ref|ZP_07054175.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601]
 gi|299815818|gb|EFI83056.1| flagellar M-ring protein FliF [Listeria grayi DSM 20601]
          Length = 554

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 90/578 (15%), Positives = 204/578 (35%), Gaps = 59/578 (10%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +     + L     + +     V +   +A  +         L+  L  +   +++  
Sbjct: 1   MTRIKTMYSKLKNWHKVAILVGFFVIVT--VALLYMNQPSTKVTLFKNLSETSQTQVTDE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS-- 124
           L +  +D+ I  NG  I V  S+    R  +   G+P + ++ G ++    +S G +   
Sbjct: 59  LGKIGVDYTIDKNGD-ILVDKSVEKLVRDKMEEDGIPYTGTD-GNDILLN-SSLGASEED 115

Query: 125 --FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAIN 181
               +++     LE EI ++  ++  + +A V + MP+  S  +    + +A+V I+   
Sbjct: 116 KKMQEQVGTKANLEKEILQSYSNV--VDSATVQMTMPESDSIFEEASQKGSAAVTIKTKG 173

Query: 182 PSVYK--SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-----NEMERNILGKSLSIV 234
                    + I+  V+AA+PN++  +V V+DS   +++       +   +     + I 
Sbjct: 174 QMSLSTAQVQGIQRTVSAAIPNINAEEVAVIDSKRGVVSDSATTAKDEGSSAYKNEVDIQ 233

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
            AI  +I+ +I   L++   + NFR      +N D  + +     P     RS +     
Sbjct: 234 DAIGKDIKTDIEDTLSSIFALKNFRVNTNVTVNFDEIKQKTEK-YPRDGKVRSEQKDSTT 292

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKL 354
            +S  S  +++ T                 S   ++K  E +NYE+++           L
Sbjct: 293 DKSTGSAGQASGTESNADVPNYTENGGNSDSTYTSEKNSETTNYELDSTMQEIKKHP-AL 351

Query: 355 ERLSIAVVVNKGRLT----EVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD------ 404
            + ++ V V++  L     ++   +   G        +        G  +   D      
Sbjct: 352 AKTNVVVWVDQNTLDANRVDMNEFTKAVGVAAGLTPNMTDPNGDGGGNANANADGNGTNQ 411

Query: 405 ----------TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
                      +TI  + FL++          +     +  +  + + L+ L+   +V +
Sbjct: 412 EVFDGTFKNGEVTIMPITFLKDDTAAPTAKPAAKPASHAWVWWILGSTLLLLIAGGIVFY 471

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
           +              +  E   +  +SP            P+  I  D+  +      R 
Sbjct: 472 IIW-------LKRKEQIEEAIAEDYISPEEALVEKELSEQPDFQIDPDAMTEPSILTRR- 523

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                     +    ++  + + +  R A I++KW   
Sbjct: 524 ----------ENLKEKISDLAKEDPGRAAAIIQKWLNE 551


>gi|228952126|ref|ZP_04114221.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228807658|gb|EEM54182.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 524

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 197/568 (34%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L     ++ 
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLLARRKRKKE 454

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
               +    E    +                                     +       
Sbjct: 455 EEEYEEYLVEEEIAASNESILEIPE--------------------EKIVPEPKPEPEEPK 494

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
               D ++    + + E  AK+++KW  
Sbjct: 495 EPTLDEQVQDATKEHVEGTAKVIKKWLN 522


>gi|46906964|ref|YP_013353.1| flagellar MS-ring protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|46880230|gb|AAT03530.1| flagellar M-ring protein FliF [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 550

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNPTPAEEDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|320535381|ref|ZP_08035495.1| flagellar M-ring protein FliF [Treponema phagedenis F0421]
 gi|320147783|gb|EFW39285.1| flagellar M-ring protein FliF [Treponema phagedenis F0421]
          Length = 571

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 99/596 (16%), Positives = 207/596 (34%), Gaps = 72/596 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I     +  +        + L+LA VIL  I+       + ++P    L       
Sbjct: 5   MNEWIKKTGTKLKELWGKWSVVQKLVLAGVILAAIIGMAVLFTWSSAPTTVPLIDVPISD 64

Query: 59  DVNR--ISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115
           +  R  I + L+E NI   +S  G  ISVP     +  R  L  + L   + +  + +FD
Sbjct: 65  EAAREKIILRLNEENISASVSATGL-ISVPDEKTARRMRSILIREDLIPKNVDP-WAIFD 122

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            V  +  T F +++   RA+   +   I+++  +  A V I +P+   F+      TASV
Sbjct: 123 -VERWTRTDFERKVDVRRAINKMVTDHIKALDDVDDANVIINVPEDTLFKADQKPITASV 181

Query: 176 MIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--- 228
           ++     S  ++     + I+ L+  AVP L   ++T+ DS  K+L   E  +++     
Sbjct: 182 VLFTKPGSDIETDRKKIQGIQKLLKLAVPGLLDENITIADSNAKILNDFEGMKDMDRLTL 241

Query: 229 --KSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDPD---- 281
             K   ++  ++ + E+ I   L    G D  R   +  +++M  +  +   Y P     
Sbjct: 242 IEKQQKMIAKLETQYEIKILTLLQKTYGKDRVRDLNIKIDMDMSEKTAQTTKYLPTEIRP 301

Query: 282 -------------SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
                          +      +    +     PE    VE   P            L  
Sbjct: 302 DNPETPWDDSEIVPSITAISETATTTWQGTGLTPEGPAGVEGQTPPAYKDMT---NQLGM 358

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377
           +++   +    I+   I+       L R +++V ++     +                  
Sbjct: 359 SNQSIVKRQEAISKSEISEVISP-VLGRRTVSVNIDGEWRKKRDDKGNLVISEGRIEREY 417

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
                  L E  + V  A G ++ R D+I++ ++ F     F +     ++     R+  
Sbjct: 418 IPISPEELQEATRAVQNAIGYDANRKDSISVLNIRFDRVAEFEA--EDAAYFRAQQRNMI 475

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +I+        LL+ F+    +                        +        +   
Sbjct: 476 ILISLG--GFAILLLIFILYRII------------------SRELERLRRLREEDELRKA 515

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +A +++ +    ++ ++   +      +    +++M   + E  A ++R W   E
Sbjct: 516 QMAREAALRAAEMNNIDVAMSVEERKRLELQENVINMAREHPEDVALLIRTWLMEE 571


>gi|16799796|ref|NP_470064.1| flagellar MS-ring protein [Listeria innocua Clip11262]
 gi|16413173|emb|CAC95953.1| lin0721 [Listeria innocua Clip11262]
          Length = 550

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 191/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   + +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S  ++      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKI-------------VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                            +       + GD +TI  + FL+NQ                  
Sbjct: 386 TPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAEPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              ++ +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 VWWLVGS---------LLFALIAAGIIAYIIFLKRKEQIEEALEAEEKDFIPAEEAIVNP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|119503663|ref|ZP_01625746.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
 gi|119460725|gb|EAW41817.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
          Length = 243

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 6/241 (2%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           + +L       +   TR + L   +   + L +    +   P +  LY  +  +D     
Sbjct: 4   NPILNRVSGFAAQPVTRQMALLIGMAASVALGVGVIQWAMKPDFQPLYGAMSPADNATAV 63

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L    I + ++     +SVPS  + +AR+ LA++G P      G+E   +    GL+S
Sbjct: 64  SLLQANGIPYTMAGGSGLLSVPSDQIPQARMALASEGFPRGGG-VGFESLYQEQEMGLSS 122

Query: 125 FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--P 182
           FM++    RA+E E+ARTI ++  +  ARVH+      +F + G  P+ASVM+       
Sbjct: 123 FMEQARYNRAVEAELARTISAMDSVKGARVHVAASKQSAFIRRGQEPSASVMVSLYPGRG 182

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN---ILGKSLSIVQAIQH 239
              +    I HLVA+++P L    V+V+D  GKLL++ + E N      +   I Q ++ 
Sbjct: 183 LSERQLAGIVHLVASSIPELQASKVSVVDQAGKLLSSQDGEDNDFGYTSEQFRIAQQLED 242

Query: 240 E 240
            
Sbjct: 243 S 243


>gi|313624697|gb|EFR94654.1| flagellar M-ring protein FliF [Listeria innocua FSL J1-023]
          Length = 549

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 85/539 (15%), Positives = 191/539 (35%), Gaps = 46/539 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   + +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S  ++      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKI------------VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
                           +       + GD +TI  + FL+NQ                   
Sbjct: 386 TPNMTTEEAGEGGEAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAEPASKAWV 444

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
             ++ +         + F  + A    + I   +K ++             A    + P 
Sbjct: 445 WWLVGS---------LLFALIAAGIIAYIIFLKRKEQIEEALEAEEKDFIPAEEAIVNPE 495

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 549


>gi|313610108|gb|EFR85433.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL F2-208]
          Length = 550

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLTEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|328467278|gb|EGF38358.1| flagellar MS-ring protein [Listeria monocytogenes 1816]
          Length = 544

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 27  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 85

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 86  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 142 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 201

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 202 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 261

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 262 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 320

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 321 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 379

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 380 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 438

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 439 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 489

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 490 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 544


>gi|229058380|ref|ZP_04196764.1| Flagellar M-ring protein fliF [Bacillus cereus AH603]
 gi|229132559|ref|ZP_04261408.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196]
 gi|228650905|gb|EEL06891.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST196]
 gi|228719889|gb|EEL71479.1| Flagellar M-ring protein fliF [Bacillus cereus AH603]
          Length = 526

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 82/561 (14%), Positives = 200/561 (35%), Gaps = 53/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L       A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKIKNVFQSLKTWHKLVIGAALLAI--ATGALLYFTLPDKYVVVYQNLNDTDKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + I  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + ++      + S M   +      I A +  +  L+  FL               
Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 K           +    +   + ++    ++        +           D +
Sbjct: 447 ---ARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPEPVEPSEPTLDDQ 503

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 504 VQEATKEHVEGTAKVIKKWLN 524


>gi|313620042|gb|EFR91558.1| flagellar M-ring protein FliF [Listeria innocua FSL S4-378]
          Length = 550

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 191/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   + +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSQEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S  ++      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKETSTDTSKGSTNQTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQQSLNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKI-------------VSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                            +       + GD +TI  + FL+NQ                  
Sbjct: 386 TPNMTTEEAGEGGEAAATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAEPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              ++ +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 VWWLVGS---------LLFALIAAGIIAYIIFLKRKEQIEEALEAEEKDFIPAEEAIVNP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|226223344|ref|YP_002757451.1| flagellar basal-body M-ring protein FliF [Listeria monocytogenes
           Clip81459]
 gi|225875806|emb|CAS04509.1| Putative flagellar basal-body M-ring protein FliF [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 550

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEEDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|290894011|ref|ZP_06556986.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071]
 gi|290556457|gb|EFD89996.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J2-071]
          Length = 550

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   + +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-------- 380
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K        
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 381 -----IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                 +   A+     +       + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGETAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|47091676|ref|ZP_00229472.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b
           H7858]
 gi|254824007|ref|ZP_05229008.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194]
 gi|254932007|ref|ZP_05265366.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262]
 gi|255521223|ref|ZP_05388460.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-175]
 gi|300764526|ref|ZP_07074519.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017]
 gi|47019995|gb|EAL10732.1| flagellar M-ring protein FliF [Listeria monocytogenes str. 4b
           H7858]
 gi|293583558|gb|EFF95590.1| flagellar M-ring protein FliF [Listeria monocytogenes HPB2262]
 gi|293593234|gb|EFG00995.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL J1-194]
 gi|300514880|gb|EFK41934.1| flagellar M-ring protein FliF [Listeria monocytogenes FSL N1-017]
 gi|328475674|gb|EGF46423.1| flagellar MS-ring protein [Listeria monocytogenes 220]
 gi|332311137|gb|EGJ24232.1| Flagellar M-ring protein FliF [Listeria monocytogenes str. Scott A]
          Length = 550

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|116872102|ref|YP_848883.1| flagellar MS-ring protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740980|emb|CAK20100.1| flagellar M-ring protein FliF [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 550

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/538 (14%), Positives = 183/538 (34%), Gaps = 43/538 (7%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG--IVAARVHIVM 158
           G+P +    G ++    +S G +   +++      +  + + I    G  + +A V + +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGITVDSASVQLTL 149

Query: 159 PDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
           P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+   
Sbjct: 150 PESSSIFEEASQKGTAAVTLKTKNNQTLTKEQVLGIQRTVSAAVPNVASEDVAIIDTKNG 209

Query: 216 LLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
           +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D  
Sbjct: 210 VISEADTANEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVAVNFDEI 269

Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTD 330
           +       P+    RS +       S+ S   +      N        +    ++   ++
Sbjct: 270 KQNTER-YPNDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEENGGDQNTYTSE 328

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           K  E +NYE+++           L + ++ V V++  L +     A+  K     A +  
Sbjct: 329 KSSETTNYELDSTIQEIEKHP-SLAKTNVVVWVDQQTLNKNGVDMAEFTKAIGVSAGLTP 387

Query: 391 IVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
            ++                    + GD +TI  + FL+NQ         +          
Sbjct: 388 NMTTEEAGAGGEATATPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDPAKTTEPASKAWIW 446

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            ++ +L+F +    +    +   R+    +  +  E                       +
Sbjct: 447 WLVGSLLFAIIAAGIIAYIIFLKRKEQLEEALEAEEKDFIPAEEAIIDPEEHPDFHFQTN 506

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
              L                       +    +L  M + +  R A +++KW     E
Sbjct: 507 AFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|217965189|ref|YP_002350867.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23]
 gi|217334459|gb|ACK40253.1| flagellar M-ring protein FliF [Listeria monocytogenes HCC23]
 gi|307570252|emb|CAR83431.1| flagellar M-ring protein [Listeria monocytogenes L99]
          Length = 550

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 84/540 (15%), Positives = 189/540 (35%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   + +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK-------- 380
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K        
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 381 -----IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                 +   A+     +       + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEVAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            ++   +            L++R      +    +L  M + +  R A +++KW     E
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|42780839|ref|NP_978086.1| flagellar MS-ring protein [Bacillus cereus ATCC 10987]
 gi|42736759|gb|AAS40694.1| flagellar M-ring protein [Bacillus cereus ATCC 10987]
          Length = 524

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/561 (13%), Positives = 191/561 (34%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F           +      ++      I A +  +G L+   L               
Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFLL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|239628992|ref|ZP_04672023.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519138|gb|EEQ59004.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 537

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/568 (14%), Positives = 184/568 (32%), Gaps = 48/568 (8%)

Query: 1   MAILDQLLQFFKSGTSLGR-----TRILILASVILVPIMLFMAARFFVNSP--HYDNLYV 53
           M I ++L         +GR      +  + A +    ++   A+         +Y  L+ 
Sbjct: 1   MGIKEKLKSVSGEKGGIGRVLDTGKKKAVAAGITAAVVIALAASVLLNTKKSGNYVALFP 60

Query: 54  KLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYEL 113
            +   + N +   L+   ++ R +  G  ++VP   +G   + ++  G P ++    +++
Sbjct: 61  GISKEENNEVLTVLNARGVEARRNSEG-EVTVPEDQLGDIMLDMSELGYPKTALP--FDI 117

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG----A 169
           F     F  T F +    +  L+  I RT++ ++G+  A V + +PD  ++        +
Sbjct: 118 FSDNMGFTTTEFEKRQYLLMNLQDRIERTLKDMTGVKNAIVTLNVPDESNYVWDEGGSNS 177

Query: 170 RPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL-- 227
             + S+ +        +   AI++LVA +VP L   +VTV+++        +        
Sbjct: 178 TGSISLTLMPSYELSPEKVSAIKNLVADSVPRLLPENVTVVNAETMQEMVADDIGTTSYG 237

Query: 228 GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDP--DSKVE 285
              L     ++  +E  I   L      D  R +    ++ D     ++ Y+P  + +  
Sbjct: 238 LNRLDFEAKVEERLENKIKNVLTLAYSPDKLRVSATVVIDYDRMITEDLHYEPQDNGQGV 297

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSI 345
                   +     +        E N    +            T       +Y ++    
Sbjct: 298 VEQYKEGRSLNGGAAGAGGIAGEENNTDIPAYGTAGTGGGAGGTGDYYRDVDYLVSYIKK 357

Query: 346 ATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDT 405
               DN KL++ ++A+ VN   LT+   +        +       IV             
Sbjct: 358 QIEKDNVKLQKATVAITVNDDNLTDSKKQQLIDAASKAANIAPEDIV------------- 404

Query: 406 ITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHN 465
             ++S   +  +   +    +             + A    VG L+   L L  +R    
Sbjct: 405 --VSSFREIPKETVKNDKPALPVQAPAQTGLDYRLIAAAAGVGILIFLLLLLLLMRSRKK 462

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
               +        +L  P                A D+    +     +           
Sbjct: 463 KHLKE------DQMLFAPFEDGDTQEPESVEQRAAEDAVQNSLGRIQPDS---------S 507

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSE 553
               ++    ++N E  A ++  W + +
Sbjct: 508 DPVDQVRSFAQMNPEIIASMISSWLKED 535


>gi|324325764|gb|ADY21024.1| flagellar MS-ring protein [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 524

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----SLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +          + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F           +      ++      I   + ++  L+  FL               
Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLFGGITGGLLVLFGLIWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|228984830|ref|ZP_04145002.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775028|gb|EEM23422.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 524

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 201/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVTGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +   G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAFGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|315281378|ref|ZP_07870015.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120]
 gi|313614975|gb|EFR88482.1| flagellar M-ring protein FliF [Listeria marthii FSL S4-120]
          Length = 550

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/540 (15%), Positives = 181/540 (33%), Gaps = 47/540 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVTVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P     RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPSDGKVRSNQKDTSTDTSKGSTNTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              +                     + GD +TI  + FL+NQ                  
Sbjct: 386 TPNMRTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNQTPVEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +L+F +    +    +   R+    +  +  E                      
Sbjct: 445 IWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEAEEKDYIPAEEAIINPEEHPDFNFQ 504

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
            D   L                       +    +L  M + +  R A +++KW     E
Sbjct: 505 TDAFDLSEPELK--------------ARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 550


>gi|222095370|ref|YP_002529430.1| flagellar ms-ring protein [Bacillus cereus Q1]
 gi|221239428|gb|ACM12138.1| flagellar M-ring protein [Bacillus cereus Q1]
          Length = 524

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHATSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    +  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEETSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F           +      ++      I   +  +  L+  FL               
Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLFGGITGGLLALFGLIWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|116514986|ref|YP_802615.1| hypothetical protein BCc_043 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256840|gb|ABJ90522.1| flagellar basal-body MS-ring and collar protein [Buchnera
           aphidicola str. Cc (Cinara cedri)]
          Length = 489

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 151/432 (34%), Gaps = 50/432 (11%)

Query: 1   MAILDQLL-QFFKSGTSL---GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M  + +L  Q  K    L      +I  +  V L+ I+  ++   +    HY  LY  L 
Sbjct: 1   MNFIKKLFFQIKKKLNYLFFCILKKIKYIFFVSLISIISIISIFLWSKKVHYVVLYNNLS 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
             D   I   L   +I +R +++  ++ VP   +    + L          N G+EL DK
Sbjct: 61  QEDSKWIISRLKILHIPYRCNNSFKTLLVPEDKINILNLSLLKN-NNILKKNFGFELLDK 119

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG++ F + I   R LEGE+++T++ I  I  ARVH+V      F +    P+ASV+
Sbjct: 120 E-KFGISQFHEHINYHRGLEGELSKTLEQIFPIQCARVHLVCKKDTDFFENNQIPSASVI 178

Query: 177 IRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLS 232
           I         Y+   AI  L++ +VP+L   ++ ++D  G +L   ++   +        
Sbjct: 179 ITLFPNMHLTYEQINAIILLISGSVPDLSSDNIVLVDQFGNILNKYDLNHTKFFNNSQYK 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            +  ++      I   L   L   +F   V  +L  D         + +   +       
Sbjct: 239 KITILEEYYSQRIKDILLPILDSKDFVVQVTTKLKKDNHASTFSDKNYNVNQKIDNSFIS 298

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
                                                 K+    N +I        +++ 
Sbjct: 299 -----------------------------------PNFKELNIKNIKITVLINYKKNNSG 323

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           K+  LS                 +      + L  I  +V +   ++  +GD I + +  
Sbjct: 324 KMVPLS-----KNELNNIENLVKSVINLSKNKLNNIENLVKSVINLSKNKGDRINLINYM 378

Query: 413 FLENQLFNSGTV 424
           FL+       + 
Sbjct: 379 FLDTPSVIDASY 390


>gi|300117335|ref|ZP_07055125.1| flagellar MS-ring protein [Bacillus cereus SJ1]
 gi|298725170|gb|EFI65822.1| flagellar MS-ring protein [Bacillus cereus SJ1]
          Length = 520

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/568 (14%), Positives = 194/568 (34%), Gaps = 67/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  FL        
Sbjct: 398 GQVNVVTVQF---DQPKEEKPKEPEESGINWWLFGGIPAGLLAIGGLVWFFL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                                            +     SS   +      +        
Sbjct: 447 ----------------ARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPEEPK 490

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
               D ++    + + E  AK+++KW  
Sbjct: 491 EPTLDEQVQDATKEHVEGTAKVIKKWLN 518


>gi|229090707|ref|ZP_04221940.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42]
 gi|228692649|gb|EEL46375.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-42]
          Length = 524

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSTSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|228914325|ref|ZP_04077940.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845319|gb|EEM90355.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 524

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKLEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|49477313|ref|YP_035866.1| flagellar MS-ring protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52143713|ref|YP_083117.1| flagellar MS-ring protein [Bacillus cereus E33L]
 gi|196038966|ref|ZP_03106273.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99]
 gi|218902861|ref|YP_002450695.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820]
 gi|225863605|ref|YP_002748983.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102]
 gi|228926782|ref|ZP_04089850.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228945349|ref|ZP_04107704.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229183938|ref|ZP_04311154.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1]
 gi|254723823|ref|ZP_05185609.1| flagellar MS-ring protein [Bacillus anthracis str. A1055]
 gi|301053283|ref|YP_003791494.1| flagellar M-ring protein [Bacillus anthracis CI]
 gi|49328869|gb|AAT59515.1| flagellar M-ring protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51977182|gb|AAU18732.1| flagellar M-ring protein [Bacillus cereus E33L]
 gi|196030111|gb|EDX68711.1| putative flagellar M-ring protein FliF [Bacillus cereus NVH0597-99]
 gi|218537965|gb|ACK90363.1| putative flagellar M-ring protein FliF [Bacillus cereus AH820]
 gi|225787831|gb|ACO28048.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB102]
 gi|228599590|gb|EEK57194.1| Flagellar M-ring protein fliF [Bacillus cereus BGSC 6E1]
 gi|228814321|gb|EEM60587.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832895|gb|EEM78464.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|300375452|gb|ADK04356.1| flagellar M-ring protein [Bacillus cereus biovar anthracis str. CI]
          Length = 524

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|196033494|ref|ZP_03100906.1| putative flagellar M-ring protein FliF [Bacillus cereus W]
 gi|195993928|gb|EDX57884.1| putative flagellar M-ring protein FliF [Bacillus cereus W]
          Length = 524

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|229166587|ref|ZP_04294339.1| Flagellar M-ring protein fliF [Bacillus cereus AH621]
 gi|228616841|gb|EEK73914.1| Flagellar M-ring protein fliF [Bacillus cereus AH621]
          Length = 524

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 80/561 (14%), Positives = 194/561 (34%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L       A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKIKNVFQSLKTWHKLVIGAALLAI--ATGALLYFTLPDKYVVVYQNLNDTDKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGTDEAHSNSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + ++      + S M   +      I A +  +  L+  FL               
Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522


>gi|84502563|ref|ZP_01000699.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597]
 gi|84389375|gb|EAQ02172.1| flagellar FliF M-ring protein [Oceanicola batsensis HTCC2597]
          Length = 238

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 84/239 (35%), Positives = 139/239 (58%), Gaps = 3/239 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           +    ++  +LG+ R++ L    +V ++        V  P Y  LY  L  S+ +R+  A
Sbjct: 1   MQALLENLKALGQGRLIALGVTGVVLVLATFFGVRAVLEPSYSTLYRDLTPSEASRMVGA 60

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A    ++  +GS +SVP   + +AR+ LA QGL    + +G+E+FD+ +  G+ SFM
Sbjct: 61  LEGAGFAVQVDSSGSILSVPQEDLARARMELAGQGLVGDGA-AGWEIFDEASGLGMNSFM 119

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI--RAINPSV 184
           Q+I R+RALEGE+AR+IQ+I G+ AARVH+V+P+  +F +   +P++SV+I  RA +   
Sbjct: 120 QKINRLRALEGELARSIQTIDGVDAARVHLVLPEREAFSRERPQPSSSVIIRSRAGHQVN 179

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEM 243
            + A+AIR LV++AVP +  G VTVL + G+ + A E          S+  +++  I  
Sbjct: 180 LRQAQAIRALVSSAVPEMSPGRVTVLTANGETILAEEGTDVAEVTQQSLKASVEDRIAS 238


>gi|163939552|ref|YP_001644436.1| flagellar MS-ring protein [Bacillus weihenstephanensis KBAB4]
 gi|163861749|gb|ABY42808.1| flagellar M-ring protein FliF [Bacillus weihenstephanensis KBAB4]
          Length = 524

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/561 (14%), Positives = 194/561 (34%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L       A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKIKNVFQSLKTWHKLVIGAALLAI--ATGALLYFTLPDKYVVVYQNLNDTDKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + I  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + ++      + S M   +      I A +  +  L+  FL               
Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKKKREEEEYEEYLAEEEVAASSESIFEIPEEKIVPEPKPEPVEPSEPTLDDQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522


>gi|228933030|ref|ZP_04095893.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826631|gb|EEM72402.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 524

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/568 (14%), Positives = 204/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + + Q I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAEAKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +  S  +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPESKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|229096232|ref|ZP_04227205.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29]
 gi|229115187|ref|ZP_04244597.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3]
 gi|228668327|gb|EEL23759.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-3]
 gi|228687192|gb|EEL41097.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-29]
          Length = 524

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/561 (14%), Positives = 199/561 (35%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKIKNVIQSLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T   ++P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+            + + +
Sbjct: 355 KTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQVDPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + ++      + S M   +      I A +  +  L+  FL               
Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 K               +  ++   L+   + I                     +
Sbjct: 447 --ARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDD---Q 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522


>gi|217959230|ref|YP_002337778.1| flagellar MS-ring protein [Bacillus cereus AH187]
 gi|229138446|ref|ZP_04267035.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26]
 gi|217064704|gb|ACJ78954.1| putative flagellar M-ring protein FliF [Bacillus cereus AH187]
 gi|228644983|gb|EEL01226.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST26]
          Length = 524

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 79/561 (14%), Positives = 193/561 (34%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++++ +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVISAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F           +      ++      I A +  +G L+  FL               
Sbjct: 405 VQF---DQPKEEKPKEPEESGINWWLFGGIPAGLLAIGGLVWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKRKKEEEEYEEYLAEDEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|229155317|ref|ZP_04283428.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342]
 gi|228628242|gb|EEK84958.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 4342]
          Length = 524

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 201/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++     ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTRKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|229109203|ref|ZP_04238802.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15]
 gi|228674213|gb|EEL29458.1| Flagellar M-ring protein fliF [Bacillus cereus Rock1-15]
          Length = 524

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K    L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKMWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        K           +    +   N ++    ++        +       
Sbjct: 447 ----------ASRKRKKEEEEYGEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
           +     ++    + + E  AK+++KW  
Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522


>gi|229121298|ref|ZP_04250529.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201]
 gi|228662143|gb|EEL17752.1| Flagellar M-ring protein fliF [Bacillus cereus 95/8201]
          Length = 524

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 81/568 (14%), Positives = 201/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKMDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+            
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFL--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEKPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|203287751|ref|YP_002222766.1| flagellar M-ring protein [Borrelia recurrentis A1]
 gi|201084971|gb|ACH94545.1| flagellar M-ring protein [Borrelia recurrentis A1]
          Length = 568

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 89/597 (14%), Positives = 193/597 (32%), Gaps = 72/597 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I        K        + +    + L  I+  +    F        L+  + + 
Sbjct: 1   MNNFITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   +++I   L   N  + I+ +G       +M  + R  L  + L     +  + LFD
Sbjct: 60  DQYLLDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  +++VMP+   F++      ASV
Sbjct: 119 -IDRWTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226
            I     S      +  E +  L+  AV  L+  ++ ++D+ G +L            ++
Sbjct: 178 RITPKPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL+  L  D F  + V   L+   Q      Y P     
Sbjct: 238 AEKERKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEP 297

Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
                             S ++ K     +   P      E N P        +      
Sbjct: 298 QNPKVSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYGDMSDIIG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377
           +++ +E  N  +N K   +  +  ++  +S+ + ++                    +   
Sbjct: 355 SNEFKEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +   D  L  I  ++ ++      RGD+IT+ ++ F     F          D  +    
Sbjct: 415 KPISDETLKSITDVLQSSFEYKPERGDSITVRNIIFDRASEFRKIDE-----DYFAGEKF 469

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
             +  +V ++  LL+    +  +         +  E             + +    +  D
Sbjct: 470 KFLIFVVSIIIALLILIFTVFFIISRELERRRRLREEEFARQAHLRRQQALMDGDNIGID 529

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           N+      +D    +  +                  +     E  AK++R W    +
Sbjct: 530 NVVGGFREEDELQSNAEI------------------LAREKPEDVAKLIRTWIVKNV 568


>gi|75761142|ref|ZP_00741134.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218896679|ref|YP_002445090.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842]
 gi|228900328|ref|ZP_04064558.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222]
 gi|74491370|gb|EAO54594.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218541808|gb|ACK94202.1| putative flagellar M-ring protein FliF [Bacillus cereus G9842]
 gi|228859363|gb|EEN03793.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 4222]
          Length = 525

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 201/568 (35%), Gaps = 62/568 (10%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + N     +  NYEI+       
Sbjct: 289 EESSTAQEGTDTKQSAGITANGEVPNYGTNNNQNGKVVYNNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRMDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + ++      + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +           +    +   N ++    ++        +       
Sbjct: 447 ---------ARRKRKKEEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
           +     ++    + + E  AK+++KW  
Sbjct: 498 TLD--EQVQDATKEHVEGTAKVIKKWLN 523


>gi|229102345|ref|ZP_04233053.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28]
 gi|228680992|gb|EEL35161.1| Flagellar M-ring protein fliF [Bacillus cereus Rock3-28]
          Length = 524

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 82/561 (14%), Positives = 200/561 (35%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKIKNVIQSLKTWHKLVIGAALLAVVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGIISKGADEAHSNSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T   ++P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGDVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + ++      + S M   +      I A +  +  L+  FL               
Sbjct: 405 VQFDQPKVEKEKEPEKSGM---NWWLFGGITAGLLALIGLVWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 K               +  ++   L+   + I                     +
Sbjct: 447 --ARRKKKREEEEYEEYLAEEEIAASNESILEIPEEKIVPEPTPEPEGPKEPTLDD---Q 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQEATKEHVEGTAKVIKKWLN 522


>gi|30019791|ref|NP_831422.1| flagellar MS-ring protein [Bacillus cereus ATCC 14579]
 gi|229127072|ref|ZP_04256071.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4]
 gi|229144358|ref|ZP_04272764.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24]
 gi|29895336|gb|AAP08623.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 14579]
 gi|228639145|gb|EEK95569.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-ST24]
 gi|228656425|gb|EEL12264.1| Flagellar M-ring protein fliF [Bacillus cereus BDRD-Cer4]
          Length = 524

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 200/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        K           +    +   N ++    ++        +       
Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
           +     ++    + + E  AK+++KW  
Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522


>gi|228938860|ref|ZP_04101460.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228971741|ref|ZP_04132362.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978350|ref|ZP_04138727.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407]
 gi|228781367|gb|EEM29568.1| Flagellar M-ring protein fliF [Bacillus thuringiensis Bt407]
 gi|228787831|gb|EEM35789.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820709|gb|EEM66734.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939360|gb|AEA15256.1| flagellar MS-ring protein [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 524

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 200/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRMDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        K           +    +   N ++    ++        +       
Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
           +     ++    + + E  AK+++KW  
Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522


>gi|229043500|ref|ZP_04191210.1| Flagellar M-ring protein fliF [Bacillus cereus AH676]
 gi|228725878|gb|EEL77125.1| Flagellar M-ring protein fliF [Bacillus cereus AH676]
          Length = 524

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 78/568 (13%), Positives = 198/568 (34%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F       +   +      ++      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQF---DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        K           +    +   N ++    ++        +       
Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
           +     ++    + + E  AK+++KW  
Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522


>gi|206974945|ref|ZP_03235860.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97]
 gi|206746964|gb|EDZ58356.1| putative flagellar M-ring protein FliF [Bacillus cereus H3081.97]
          Length = 524

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    +  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEETSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F           +      ++      I   +  +  L+  FL               
Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLIGGITGGLLALFGLIWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|229172393|ref|ZP_04299952.1| Flagellar M-ring protein fliF [Bacillus cereus MM3]
 gi|228610864|gb|EEK68127.1| Flagellar M-ring protein fliF [Bacillus cereus MM3]
          Length = 524

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/568 (14%), Positives = 205/568 (36%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + + Q I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQQQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 K+ E   + +      +S+ +   +P + I  +   +        L  +++   
Sbjct: 447 ARRKRKKEEEEYEEYLAEEEIAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVHDAT 506

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                       + + E  AK+++KW  
Sbjct: 507 ------------KEHVEGTAKVIKKWLN 522


>gi|118477182|ref|YP_894333.1| flagellar MS-ring protein [Bacillus thuringiensis str. Al Hakam]
 gi|118416407|gb|ABK84826.1| flagellar M-ring protein [Bacillus thuringiensis str. Al Hakam]
          Length = 524

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 202/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KLEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F           +      ++      I A +  +G L+  F         
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFF--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|196045123|ref|ZP_03112356.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108]
 gi|196024125|gb|EDX62799.1| putative flagellar M-ring protein FliF [Bacillus cereus 03BB108]
          Length = 524

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/568 (14%), Positives = 203/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+          
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQVDPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S    ++      I A +  +G L+            
Sbjct: 398 GQVNVVTVQFDQPKEEKKKEQEES---GINWWLFGGIPAGLLAIGGLVWFL--------- 445

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                 KK E   +  L+   I+++  + +   +   +     +                
Sbjct: 446 LARRKRKKEEEEYEEYLAEEEIAASNESIMEIPEEKIVPEPKPEPEEPKEPTLD------ 499

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 500 -----EQVQDATKEHVEGTAKVIKKWLN 522


>gi|296502346|ref|YP_003664046.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171]
 gi|296323398|gb|ADH06326.1| flagellar MS-ring protein [Bacillus thuringiensis BMB171]
          Length = 524

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/568 (13%), Positives = 198/568 (34%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F       +   +      ++      I A +  +G ++   L        
Sbjct: 398 GQVNVVTVQF---DQPKAEKEKEPEKSDMNWWLFGGITAGLLAIGGIVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        K           +    +   N ++    ++        +       
Sbjct: 447 ----------ARRKRKKEEEEYEEYLAEDEIAASNESILEIPEEKIVPEPKPEPEEPKEP 496

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
           +     ++    + + E  AK+++KW  
Sbjct: 497 TLD--EQVQDATKEHVEGTAKVIKKWLN 522


>gi|229078928|ref|ZP_04211480.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2]
 gi|228704342|gb|EEL56776.1| Flagellar M-ring protein fliF [Bacillus cereus Rock4-2]
          Length = 524

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|254993621|ref|ZP_05275811.1| flagellar MS-ring protein [Listeria monocytogenes FSL J2-064]
          Length = 544

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/534 (15%), Positives = 188/534 (35%), Gaps = 47/534 (8%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA-------------ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
              ++                    + GD +TI  + FL+N                   
Sbjct: 386 TPNMTTEEAGADGEAAAAPTFEGTFQNGD-VTIMPIQFLDNATPAEKDTTEKAAPASKAW 444

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              +  +         + F  + A    + I   +K ++             A    + P
Sbjct: 445 IWWLAGS---------LLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINP 495

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKW 549
            ++   +            L++R      +    +L  M + +  R A +++KW
Sbjct: 496 EEHPDFNFQTDAFDLSEPELKAR-----KESLKNKLGEMAKEDPGRAAAVIQKW 544


>gi|152975158|ref|YP_001374675.1| flagellar MS-ring protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152023910|gb|ABS21680.1| flagellar M-ring protein FliF [Bacillus cytotoxicus NVH 391-98]
          Length = 521

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/561 (13%), Positives = 203/561 (36%), Gaps = 55/561 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSDVNR 62
           ++++   F+S  +  +        +    + +   A  +   P  Y  +Y  L  +D   
Sbjct: 1   MEKIKNVFQSLKTWHK------MVIGAAILAIGTGALLYFTLPDKYVVVYQNLNDADKQE 54

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I+  LS+  +D+++ ++G +I VP+      R  +   GLP +S  SG E+  + +S G 
Sbjct: 55  ITAELSKLGVDYQLVNDG-AIKVPTKDAPWIRKEMNGMGLPFNS-KSGEEILLE-SSLGS 111

Query: 123 TSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIR 178
           +   +++ ++   + ++ + I ++ + I +A V I +P+  +             +V ++
Sbjct: 112 SEQDKKMKQLVGTKKQLEQDIVRNFATIESANVQITLPEKETIFDEEKAKGTAAITVGVK 171

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSI 233
                       I+ +++AAV  +   +V+V+DS   +++               K + +
Sbjct: 172 RGQLLTEDQVAGIQQMISAAVSGVKPEEVSVIDSKKGIVSKGADASTHASSSSYEKEVEM 231

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLS 291
            Q I+++++ +I+  L      + F+      +N D    +   Y      +  +  +  
Sbjct: 232 QQQIENKLKQDIDATLMTMFKANEFKVNTKVSVNYDEVTRQSEKYGDKGVLRSRQDQQER 291

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDN 351
             AQ    ++  + +T    +P+         + + + +   +  NYEI+          
Sbjct: 292 STAQEGADAKQGAGITANGEVPNYGTNNNQNGKVVYDNNNGNKIENYEIDKTVETIKKHP 351

Query: 352 YKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGD-TITITS 410
            +L + ++ V V+   LT+             +   I          N    +  + + +
Sbjct: 352 -ELTKTNVVVWVDNDTLTKRRIDMTT------FKEAIGTAAGLQIDPNGEFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + +   +   + +  +             +  +   L+                 K
Sbjct: 405 VQFDQQKEEKTKEPEPNGFNWWLIGGIAGGLLALGGLVWYLL------------ARRKRK 452

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
           + E+     L+   +++   T +   +     +   +    + +               +
Sbjct: 453 QEEIEEYESLAEEEVAATDETIMEIPEEKLEPTEQAEPTEPTLD--------------EQ 498

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 499 VQDAAKEHVEGTAKVIKKWLN 519


>gi|203284212|ref|YP_002221952.1| flagellar M-ring protein [Borrelia duttonii Ly]
 gi|201083655|gb|ACH93246.1| flagellar M-ring protein [Borrelia duttonii Ly]
          Length = 568

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 88/597 (14%), Positives = 194/597 (32%), Gaps = 72/597 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M   I        K        + +    + L  I+  +    F        L+  + + 
Sbjct: 1   MNNFITKFFASISKKIKKATMVQKVAFGVIALFIILSLVFLVSFSTRKQGIALF-GISIK 59

Query: 59  D---VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           D   +++I   L   N  + I+ +G       +M  + R  L  + L     +  + LFD
Sbjct: 60  DQYLLDKIVQRLDRENAKYTITADGRIYLSDENMSKRIRAILVREELIPMHMDP-WSLFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            ++ + +T F + I   R++   + + I ++  + A  +++VMP+   F++      ASV
Sbjct: 119 -IDRWTITDFERNINLRRSITRAVEQHIVALDDVDAVSINLVMPEKALFKESQESVRASV 177

Query: 176 MIRAINPSV----YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNI 226
            I     S      +  E +  L+  AV  L+  ++ ++D+ G +L            ++
Sbjct: 178 RITPKPGSDIATNRQKVEGLVKLIQYAVEGLEADNIVIVDNKGTILNDFSNLDGVDRIDL 237

Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP----- 280
             K   +    +  +   I+ AL+  L  D F  + V   L+   Q      Y P     
Sbjct: 238 AEKERKLKLKYESMLRDEIDFALSKVLSSDRFMIARVNVTLDTSKQTTESKEYAPIELEP 297

Query: 281 ------------DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
                             S ++ K     +   P      E N P        +      
Sbjct: 298 QDPKVSYNTRKVSDSTLISSQVHKREYEGQGYSPWGPPGQEGNTPPEYRDMSDIIG---K 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377
           +++ +E  N  +N K   +  +  ++  +S+ + ++                    +   
Sbjct: 355 SNEFKEIKNVALNEKKSLSEKEPARVSGISLGIFIDGIWDFVYDESGNFVMENGMRKREY 414

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +   D  L  I  ++ ++      RGD+IT+ ++ F  +  F          D  +    
Sbjct: 415 KPISDETLKSITDVLQSSFEYKPERGDSITVRNIIFDRSSEFRKIDE-----DYFAGEKF 469

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
             +  +V ++  LL+    +  +         +  E             + +    +  D
Sbjct: 470 KFLIFVVSIIIALLILIFTVFFIISRELERRRRLREEEFARQAHLRRQQALMDGDNIGID 529

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           ++      +D    +  +                  +     E  AK++R W    +
Sbjct: 530 DVVGGFREEDELQSNAEI------------------LAREKPEDVAKLIRTWIVKNV 568


>gi|229069298|ref|ZP_04202588.1| Flagellar M-ring protein fliF [Bacillus cereus F65185]
 gi|228713785|gb|EEL65670.1| Flagellar M-ring protein fliF [Bacillus cereus F65185]
          Length = 524

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|160880849|ref|YP_001559817.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg]
 gi|160429515|gb|ABX43078.1| flagellar M-ring protein FliF [Clostridium phytofermentans ISDg]
          Length = 531

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/572 (13%), Positives = 173/572 (30%), Gaps = 70/572 (12%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           I    ++  +      + + +I+ SV+   I   +   F +    Y  L    +    ++
Sbjct: 5   IKQIPVRLLEIWKKYSKKQKIIIISVVSSVICALLLLIFLLGRTEYVELIKLEDTKTASQ 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
               L E  I +++ D+G ++ V +S   +A++ +A   + S +  S  +L +       
Sbjct: 65  AIDILKENGIAYQLKDDGVTVLVDNSKKTEAKLLIADSEIASKAKLSLEQLLNND--MST 122

Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARV-HIVMPDMGSFRKIGARPTASVMIRAIN 181
           T++ ++       +G++   ++   GI  AR+ ++      S  +     + S+ +   +
Sbjct: 123 TNYDKQTKLHLYYQGDLEELLKKQEGIDDARISYLPSDKRSSILEQEKEISCSIFLTINS 182

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQAIQH 239
                SAEAI   VA ++ N     V V+D  G LL     + E     K+L   QA+  
Sbjct: 183 KFKKSSAEAIAITVANSLGNETTNKVKVIDQYGNLLYNGPEDEESEYTNKNLEFRQAVLG 242

Query: 240 EIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR-EIVYDPDSKVERSIRLSKDAQRSE 298
           +    + +      G D    +   ++N D         +  +   +   +  +      
Sbjct: 243 DYTERVVR-FGLMNGFDYVEPSFALDINFDKTTEEIREYFAGEGLEQGLYQSYQKISSEN 301

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLS 358
                     + N       +         +   E   +Y  + K   T      +   +
Sbjct: 302 QGSNGDIPGTDSNTDTDYYIQTEKSG---KSSYDELNISYLPSEKLTKTLKGWGIVNVDT 358

Query: 359 IAVVVNKGRLTEVLGR------------------SADQGKIDSYLAEINKIVSAATGINS 400
             V +   R+ ++                     +  + K      E   + + ATG+N 
Sbjct: 359 SKVAIALKRVKDIKEEDLKLLGLLNGTTFEEYVLNNSEPKQLDVSKEYYTLFANATGLNE 418

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
                I     +F+     +     +  + + +     +I             F+    +
Sbjct: 419 NNISLIMWEVPNFIPTPKSDVNWQLILEIILAALILGLLI-------------FVVFRGM 465

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
             +                              +      L        +        I 
Sbjct: 466 APV-----------------------------EVTEIEPELSVEQLLATTKENQSLDDIE 496

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                ++   +   ++ N E  A +LR W   
Sbjct: 497 FSEKSETRRMIEKFVDENPEAVANLLRNWLTD 528


>gi|229029426|ref|ZP_04185509.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271]
 gi|228731885|gb|EEL82784.1| Flagellar M-ring protein fliF [Bacillus cereus AH1271]
          Length = 524

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/561 (14%), Positives = 193/561 (34%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + I  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFAAIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   ++ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + +       + S M   +      I   +  +  L+  FL               
Sbjct: 405 VQFDQPKEEKKKEPEASGM---NWWLIGGITGGLLALVGLIWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|302670718|ref|YP_003830678.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316]
 gi|302395191|gb|ADL34096.1| flagellar M-ring protein FliF [Butyrivibrio proteoclasticus B316]
          Length = 539

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/562 (14%), Positives = 170/562 (30%), Gaps = 41/562 (7%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +     +           +  ++     V ++  +     +N P Y  L       + + 
Sbjct: 5   LRAAWQKVLDWWNQFTAKQKTLIVGAGTVVLLTIIILVTVLNQPQYVLLAQATSTKEASE 64

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           I   L   +I++++SD+G    V       A + L A  + S +            SF  
Sbjct: 65  IKDLLDSNSINYKMSDDGLEFRVLKKDQANANLILGANDIQSYAYTIDNV---TEGSFST 121

Query: 123 TSFMQEITRVRALEGEIAR-TIQSISGIVAARVHIVMPDMG---SFRKIGARPTASVMIR 178
           T + ++   V+ LE ++    +     I +A V + +PD        K  A     + I 
Sbjct: 122 TEYDKQKKYVKYLESKLEHDMLAKFDTIDSANVTLHIPDDDGTLIGNKDEASAWILLNIN 181

Query: 179 AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL---TANEMERNILGKSLSIVQ 235
             N    ++A  +   VAA++      D+ +LD +G LL   +    +  I    L++  
Sbjct: 182 DPNGFGEENANFVAKAVAASLGKKSTNDIVILDYSGNLLFSGSEETTDAGIASNQLNLKT 241

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295
             +  ++  + K L      D+ + A    L+   ++     Y P     + +   +   
Sbjct: 242 KAEQIVKNEVKKVLLGTKLYDDIQVASNLVLDFSKEERTTHNYTPAEDQTQGVLSHESIY 301

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
            +E     S +             V    +  ++   EE  +Y  N      T+    ++
Sbjct: 302 NAENVNGVSGIPGTDTNEDDETTYVTQDNTNSSSTITEEDRSYLPNEDITTRTNIPGAIK 361

Query: 356 RL--SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
               SI+V      + +             +          AT         +   +   
Sbjct: 362 YDESSISVTAINYVVMKEEDYDKAANGDLDWKDYKIANTEPATMQVPDEMINVVAKATGI 421

Query: 414 LENQLFNSGTVQVSFMDILSRHF--ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471
               +  +   Q  F+D    +     ++     L+   L+ F+ + ++           
Sbjct: 422 AAGNVAMAAYTQYVFIDKTGANITVTDILQIATILIILGLLAFIVIRSMW---------- 471

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                             +            S  Q + S        I      ++   +
Sbjct: 472 -----------------TSKKTEEEPEPEELSVEQLLESTPEETLEDIEMDTGSETKRLI 514

Query: 532 LHMIEINEERFAKILRKWARSE 553
              ++ N E  A +LR W   +
Sbjct: 515 EKFVDENPEAAATLLRNWLNED 536


>gi|226327719|ref|ZP_03803237.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198]
 gi|225203423|gb|EEG85777.1| hypothetical protein PROPEN_01592 [Proteus penneri ATCC 35198]
          Length = 396

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 139/409 (33%), Gaps = 54/409 (13%)

Query: 180 INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQ 238
                     AI H+VA++V  +    VT++D +GKLLT  +   R++    L  VQ ++
Sbjct: 6   GRALDEGQINAIVHIVASSVAGMPDSSVTIVDQSGKLLTQPDALGRDLNSIQLKYVQELE 65

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSE 298
              +  I   L   +G  N  + V A+++    +     Y P+    ++   SK   +SE
Sbjct: 66  SRYQQRIETLLGPIVGRGNVHAQVTAQVDFSHTEETAEEYKPNQPPNQAAVRSKQLSQSE 125

Query: 299 TSQ---PESAVTVEQNMPHVSDRKVPLPR----------------------SLENTDKKE 333
            +             N P    +                            +  +  + +
Sbjct: 126 QNGGMLAGGVPGALSNQPVAPPQAPIETPKAQEGEKTEGTNATGTNRSLTRNPNSNSRLD 185

Query: 334 EQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG---------RSADQGKIDSY 384
           E +NYE++ +          +ERLS+AV+VN   +               +      D  
Sbjct: 186 ETTNYEVDRRIRHIKRPVGNVERLSVAVIVNYKTVENKKEAAEGEEPVVETKLVPLTDEQ 245

Query: 385 LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALV 444
           + +I  +V  A G +  RGD++++ +  F + +            +IL++     ++   
Sbjct: 246 IQQIEGLVREAMGYSQERGDSLSVVNSQFNDIEEKVITVPVWENPEILAK----ALDLGR 301

Query: 445 FLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSS 504
           +L+  ++   L    ++         +       + +   +   V    + ++     + 
Sbjct: 302 WLLLIIIAWILWRKLVKPQIEKRREAEAAAQKAVLKTKLQVKDDVDEAELDDEARRKQAR 361

Query: 505 NQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +                       R+  M E +    A ++R+W   E
Sbjct: 362 KRVSAELQS---------------QRIREMAEKDPRVVAMVIREWMSKE 395


>gi|229195959|ref|ZP_04322712.1| Flagellar M-ring protein fliF [Bacillus cereus m1293]
 gi|228587518|gb|EEK45583.1| Flagellar M-ring protein fliF [Bacillus cereus m1293]
          Length = 524

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/561 (13%), Positives = 190/561 (33%), Gaps = 55/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLATDG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           + + ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KRMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
            +      ++ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LMADQVAGVQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
               ++  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +                   + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F           +      ++      I   +  +  L+  FL               
Sbjct: 405 VQF---DQPKEEKKKEPEESGINWWLIGGITGGLLALFGLIWFFL--------------- 446

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 +                      +               +           D +
Sbjct: 447 -----ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEQPKEPTLDEQ 501

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +    + + E  AK+++KW  
Sbjct: 502 VQDATKEHVEGTAKVIKKWLN 522


>gi|229149948|ref|ZP_04278176.1| Flagellar M-ring protein fliF [Bacillus cereus m1550]
 gi|228633629|gb|EEK90230.1| Flagellar M-ring protein fliF [Bacillus cereus m1550]
          Length = 524

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|228958026|ref|ZP_04119762.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801651|gb|EEM48532.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 524

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRRKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|218232102|ref|YP_002366431.1| flagellar MS-ring protein [Bacillus cereus B4264]
 gi|218160059|gb|ACK60051.1| putative flagellar M-ring protein FliF [Bacillus cereus B4264]
          Length = 524

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/568 (13%), Positives = 197/568 (34%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F       +   +      ++      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQF---DQPKAEKEKEPEKSGINWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|229189843|ref|ZP_04316854.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876]
 gi|228593651|gb|EEK51459.1| Flagellar M-ring protein fliF [Bacillus cereus ATCC 10876]
          Length = 524

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKAEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|206970714|ref|ZP_03231666.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134]
 gi|228964729|ref|ZP_04125836.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|229178155|ref|ZP_04305526.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W]
 gi|206734350|gb|EDZ51520.1| putative flagellar M-ring protein FliF [Bacillus cereus AH1134]
 gi|228605285|gb|EEK62735.1| Flagellar M-ring protein fliF [Bacillus cereus 172560W]
 gi|228794979|gb|EEM42478.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 524

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|228920457|ref|ZP_04083802.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839087|gb|EEM84383.1| Flagellar M-ring protein fliF [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 524

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 79/568 (13%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  + G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTSAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEIAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|228907379|ref|ZP_04071237.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200]
 gi|228852240|gb|EEM97036.1| Flagellar M-ring protein fliF [Bacillus thuringiensis IBL 200]
          Length = 524

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 199/568 (35%), Gaps = 63/568 (11%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDTD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KS 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +        K 
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGTDEAHSSSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   ++ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQLEGKLKQDIDATLMTMFKSNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGADTKQGAGITANGEVPNYGTNNNQNGKVVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFIN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
             + + ++ F + +       + S M   +      I A +  +G L+   L        
Sbjct: 398 GQVNVVTVQFDQPKAEKEKEPEKSGM---NWWLFGGITAGLLAIGGLVWFLL-------- 446

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                        +               +  ++   L+   + I    +          
Sbjct: 447 ---------ARRKRKKEEEEYEEYLAEEEVAASNESILEIPEEKIVPEPKPEPEEPKEPT 497

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWAR 551
                 ++    + + E  AK+++KW  
Sbjct: 498 LD---EQVQDATKEHVEGTAKVIKKWLN 522


>gi|313905127|ref|ZP_07838496.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6]
 gi|313470030|gb|EFR65363.1| flagellar M-ring protein FliF [Eubacterium cellulosolvens 6]
          Length = 563

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 88/586 (15%), Positives = 194/586 (33%), Gaps = 51/586 (8%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M IL++L + ++  +++ R  ++I+    +  + + +       +  Y  L+  L   + 
Sbjct: 1   MKILNKLKETWQQLSAMARRLLIIVLVGAVAFVAIGIVLLNQKKTTEYTTLFTGLNQEES 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   + E    +       +I VP     K R  + ++G P S     Y ++   +  
Sbjct: 61  REIVSMIQEEGKQYLYDAGSGTIQVPVEQADKLRAEILSKGYPQSGFT--YSMYVGNSGI 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGAR---------- 170
             T   +E   +  L+  +  TI+   G+  A+V I   D   +                
Sbjct: 119 MATESDKEQYTLYDLQDRLGATIRLFDGVRDAKVTIAQADDDGYVLDEDGDTKSNSDDDV 178

Query: 171 ---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG--KLLTANEMERN 225
               +  V ++  +    K+A+AIR+LVA +V  ++  +V+V D+    ++    + E  
Sbjct: 179 NASASVVVTMKRGSELTEKNADAIRNLVARSVRGINFTNVSVFDAATMQEIGGNADDESA 238

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY------- 278
                  + + +++ I  N+ K LA    ++N   AV  +L+  T       Y       
Sbjct: 239 NSEAVNELTKQVENNIAANVKKVLAKLYHMENVEVAVRGKLDTSTLLSENTQYTVPVQAD 298

Query: 279 --DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
             D +  ++     S        +    A T           +        ++       
Sbjct: 299 STDKEGLLDHEEDASAYTGPGAATAAGVAGTDANADTPRYTTENGANGDEYSSFDTSTSR 358

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
            +  NT       +   L+  ++AVV++    +                 ++  +V+ A 
Sbjct: 359 QWLYNTLKEQVQRNPGTLQDCTVAVVIDTEDTSVDE-------------NDLINLVADAA 405

Query: 397 GIN-SRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           GI+     + IT+      +     +   + +      R    +I A V           
Sbjct: 406 GISREDAPEKITVVRSAIPKATATPTPGPEDNSEAEQQRQQMIIIAAAVGAFLF------ 459

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
                  L  +    K +   +  L     +      L   +  A  ++  +        
Sbjct: 460 -----LLLIILIIRGKKKKKKQRELEAQLAAEQEAAELAAAEAEAAAAAQSEKELSEEES 514

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQH 561
            S  +    ++    +   +E N +  AK+++ W R   E    + 
Sbjct: 515 ASNEHVARGQELKDNIGDFVEENPQVAAKLIQSWLREGDEKSGRKQ 560


>gi|229017034|ref|ZP_04173954.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273]
 gi|229023215|ref|ZP_04179726.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272]
 gi|228738140|gb|EEL88625.1| Flagellar M-ring protein fliF [Bacillus cereus AH1272]
 gi|228744305|gb|EEL94387.1| Flagellar M-ring protein fliF [Bacillus cereus AH1273]
          Length = 525

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 79/561 (14%), Positives = 194/561 (34%), Gaps = 53/561 (9%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + I  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFAVIETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGAGEAHSSSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSIRLSKDAQ 295
           + +++ +I+  L      + ++      +N D    +   Y      + ++    S  AQ
Sbjct: 236 EGKLKRDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEESSTAQ 295

Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355
                +  + +T    +P+         + + +     +  NYEI+           +L 
Sbjct: 296 EGADMKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIKKHP-ELT 354

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITS 410
           + ++ V V+   L +              +    + +  A G+ +          + + +
Sbjct: 355 KTNVVVWVDNDTLVK----------RRIDMETFKEAIGTAAGLQADPNGNFTNGQVNVVT 404

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           + F + +       + S M   +      I   +                  L       
Sbjct: 405 VQFDQPKEDKPKKPEESGM---NWWLIGGITGGL------------------LALALLIW 443

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
                 K           +    +   + ++    ++        +           D +
Sbjct: 444 FLLARSKKKKEEEEYEEYLAEEEVAVSSESIMEIPEEKIVPEPKREPEPVEPTEPTLDDQ 503

Query: 531 LLHMIEINEERFAKILRKWAR 551
           +      + E  AK+++KW  
Sbjct: 504 VQEATREHVEGTAKVIKKWLN 524


>gi|15639390|ref|NP_218839.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025632|ref|YP_001933404.1| flagellar MS-ring protein [Treponema pallidum subsp. pallidum SS14]
 gi|6016022|sp|O83414|FLIF_TREPA RecName: Full=Flagellar M-ring protein
 gi|3322682|gb|AAC65387.1| flagellar basal-body M ring protein (fliF) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018207|gb|ACD70825.1| flagellar basal-body M ring protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059789|gb|ADD72524.1| flagellar M-ring protein FliF [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 567

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/586 (16%), Positives = 193/586 (32%), Gaps = 70/586 (11%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEVSDVNRISVA 66
           +           +  +LA   LV +M  +    +   P    L      + +   +I + 
Sbjct: 11  KLKTQWKKWTLVQKSVLAGAALVSVMGVVVLLTWSAKPTLVPLIDTPITDETVREKIILR 70

Query: 67  LSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
           L+E N+   +S  G  ISV      +  R  L  + L   + +  + +FD V  +  T F
Sbjct: 71  LNEENVRATVSSVGL-ISVSDEKTARRMRSILIREDLIPKNVDP-WAIFD-VERWTRTDF 127

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            + +   RA+   +   I+++  I  A V I +P+   F+      TASV+I     S  
Sbjct: 128 ERRVDVRRAINNTVTNHIKALDDIDDAHVVINVPEDALFQADQKPITASVVIFPKPSSTI 187

Query: 186 KS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERNILGKSLSIVQA 236
            S     E I+ L+  AVP L   ++T++DS   +L   E        +++ K   ++  
Sbjct: 188 ASERKKIEGIQKLLKLAVPGLKDENITIVDSDATVLNDFEGFKDADRLSLIEKQQKMIAK 247

Query: 237 IQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQQIREIVYDP--------------- 280
           ++ + E  +   L    G D  R   +  E+++  +  +   Y P               
Sbjct: 248 LESQYEAKVLALLQKTYGKDRVRDLNIKIEMDLSEKTSQTTKYLPIEIRQDNPDTPWDDS 307

Query: 281 --DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
                V      +    +     PE    VE   P            +  +++   +   
Sbjct: 308 QVVPSVTSISETATTTWQGTGLNPEGPPGVEGQTPPAYKDMS---NQVGLSNQSVVKKQE 364

Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSADQGKIDSYLAE 387
            I+   I        L R +++V ++     +                         L E
Sbjct: 365 AISKSEINEVVSP-VLGRRTVSVNIDGEWRKKRDEHGRFIVKEGHIEREYIPISAEELRE 423

Query: 388 INKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLV 447
             K V  A G ++ R D++++ ++ F     F+          +  +    +I   +  V
Sbjct: 424 ATKAVQDAIGFDAGRKDSVSVLNIKFDRTSEFDREDEHY----LRVQQRNMIILYSLASV 479

Query: 448 GTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQD 507
             +L  F+    + +        + E   +          A+        N+++      
Sbjct: 480 AIVLFIFMVYKVISKEVERRRRLREEELLRQQQLMRER--ALWEAEQAGMNVSMS----- 532

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                      +      +    +L+M   + E  A ++R W   E
Sbjct: 533 -----------VEERKRLELQENVLNMAREHPEDVALLVRTWLMEE 567


>gi|49184575|ref|YP_027827.1| flagellar MS-ring protein [Bacillus anthracis str. Sterne]
 gi|65319014|ref|ZP_00391973.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Bacillus anthracis str. A2012]
 gi|227815496|ref|YP_002815505.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC
           684]
 gi|254683235|ref|ZP_05147096.1| flagellar MS-ring protein [Bacillus anthracis str. CNEVA-9066]
 gi|254734587|ref|ZP_05192299.1| flagellar MS-ring protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740996|ref|ZP_05198684.1| flagellar MS-ring protein [Bacillus anthracis str. Kruger B]
 gi|254755239|ref|ZP_05207273.1| flagellar MS-ring protein [Bacillus anthracis str. Vollum]
 gi|254759775|ref|ZP_05211799.1| flagellar MS-ring protein [Bacillus anthracis str. Australia 94]
 gi|49178502|gb|AAT53878.1| secretory protein of YscJ/FliF family (flagellar M-ring protein)
           [Bacillus anthracis str. Sterne]
 gi|227005826|gb|ACP15569.1| putative flagellar M-ring protein FliF [Bacillus anthracis str. CDC
           684]
          Length = 460

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/473 (15%), Positives = 175/473 (36%), Gaps = 43/473 (9%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-YDNLYVKLEVSD 59
           M  +  ++Q  K+   L          +    + +   A  +   P  Y  +Y  L  +D
Sbjct: 1   MEKMKNVIQSLKTWHKL---------VIGAALLAIVTGALLYFTLPDKYVVVYQNLNDAD 51

Query: 60  VNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
              I+  LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S
Sbjct: 52  KQEITAELSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SS 108

Query: 120 FGLTSFMQEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASV 175
            G +   +++ ++   + ++ + I ++ + +  A V I +P+  +             +V
Sbjct: 109 LGSSEQDKKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITV 168

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGK-----S 230
            ++            I+ +++AAVP +   +V+V+DS   +++    E +          
Sbjct: 169 GVKRGQLLTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSTSSSSYEKE 228

Query: 231 LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDS--KVERSI 288
           + +   I+ +++ +I+  L      + ++      +N D    +   Y      + ++  
Sbjct: 229 VEMQHQIEGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQ 288

Query: 289 RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
             S  AQ    ++  + +T    +P+         + + +     +  NYEI+       
Sbjct: 289 EESSTAQEGAETKQGAGITANGEVPNYGTNNNQNGKIVYDNKNGNKIENYEIDKTVETIK 348

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RG 403
               +L + ++ V V+   L +                   + +  A G+ +        
Sbjct: 349 KHP-ELTKTNVVVWVDNDTLVKRKIDMTT----------FKEAIGTAAGLQADPNGNFTN 397

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLG 456
             + + ++ F           +      ++      I A +  +G L+  FL 
Sbjct: 398 GQVNVVTVQF---DQPKEEKKKEPEESGINWWLFGGIPAGLLAIGGLVWFFLA 447


>gi|315123886|ref|YP_004065890.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017608|gb|ADT65701.1| flagellar M-ring protein FliF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 317

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 147/310 (47%), Gaps = 13/310 (4%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPH-----YDNLYVKL 55
           M   + L Q  +   +L R + +++A+ I+V +   +    F  S       Y  L   +
Sbjct: 1   MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRGSGSNANNGYAVLVENV 60

Query: 56  EVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
             S    I   L + NI +++    + I VP   V + R+ +A++GL   S   G+E FD
Sbjct: 61  SPSSSAAIVAKLEQNNIPYKLESE-NKILVPQDQVYRQRMFIASEGLIKDS-RVGFEAFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
              +FG T+  Q++   RA+EGE+ARTI+++  I +A VHI  P    F +    PTASV
Sbjct: 119 -TQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAFPKDSVFTERQIPPTASV 177

Query: 176 MIRAIN--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLS 232
           ++          K  + I+++V+AAVP L   +V + D +G  L   E  E +++   + 
Sbjct: 178 VVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVPLDEQEAYEDDLVRAQIK 237

Query: 233 IVQAIQHEIEMNINKALAAFL-GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
                +  +E  I + LA F  G+D  + +V  + +   Q+ +  +YDP+  + RS +  
Sbjct: 238 FKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSKQESQSEIYDPN-PIVRSEQTL 296

Query: 292 KDAQRSETSQ 301
            + +      
Sbjct: 297 NEERTGRKDP 306


>gi|258511371|ref|YP_003184805.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478097|gb|ACV58416.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 507

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 193/563 (34%), Gaps = 71/563 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+ +   Q       L       +       +   +   F    PHY  +   L+   + 
Sbjct: 4   ALRNIWTQARGKWAGLPARSRRNVIIAAAALLAALLVVVFAATRPHYVTIMEGLDDKSLG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L    I   I   G+++ VP+    +ARI LA  GLP S  ++   +     S G
Sbjct: 64  QVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLPQSGYDAYSGV---TTSLG 118

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180
            T     +  + AL+  ++ TI  I+G+ +A+VHIVMP    F         ASV +   
Sbjct: 119 ETQDEFNLQVLNALQQSLSTTISDINGVESAQVHIVMPQQQLFVTQPTTDAKASVFVDLG 178

Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN------EMERNILGKSLS 232
                       I+ LVA +VP L +G+VTV+D  G +L+++                L+
Sbjct: 179 PGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSDVAQGGSSSAVGAASSELA 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + + ++++++  +   L   +G +N    V A +  +  Q                  S+
Sbjct: 239 MREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTTTHTLINAPGSNTGFITSQ 298

Query: 293 DAQRSETSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           + Q+S++S         Q    P+++        ++ N+      +NY  + ++  TT D
Sbjct: 299 EVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGAVTNSTTSNTITNYAYSYQNQQTTVD 358

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG-DTITIT 409
             ++   S+ V++N          S D+    +  A+I   V +  G    +G + ++++
Sbjct: 359 PMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFVQSVLGTTPSQGKNVVSVS 408

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++ F                             +          +L     R+       
Sbjct: 409 AVPFANPMQAVPAAPGARTWVYALGGLLLGALVVAG--------YLVFRRRRQPAGEVIE 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                  +  L   P++                                      +    
Sbjct: 461 IPAGETFEQPLEELPLTQE------------------------------------EVLRN 484

Query: 530 RLLHMIEINEERFAKILRKWARS 552
           +L+ + +   + FA +LR W   
Sbjct: 485 QLIQLAQHRPDDFASLLRTWLSE 507


>gi|330946240|gb|EGH47422.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 227

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 5/228 (2%)

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           ARI LA  G+  S +N G+E+ DK    G + FM+     R LEGE+ARTI +++ +  A
Sbjct: 1   ARIQLAQAGVVQSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGA 60

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           RVH+ +P    F +   +P+ASV++              AI +LVA +VP L    +TV+
Sbjct: 61  RVHLAIPKSSVFVRDDRKPSASVLVELYAGRSLEPSQVLAIINLVATSVPELSKSQITVV 120

Query: 211 DSTGKLLTANEMERN--ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           D  G LL+         + GK     + ++  +   +   L   LG D +++ V A ++ 
Sbjct: 121 DQKGTLLSDQAENSELTMAGKQFDYSRRMEGMLTQRVQNILQPILGNDRYKAEVSAVVDF 180

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVS 316
              +     ++PD    RS +   + QRS +S          N P   
Sbjct: 181 SAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGGVPGALSNQPPGP 227


>gi|218288294|ref|ZP_03492593.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241653|gb|EED08826.1| flagellar M-ring protein FliF [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 507

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/563 (17%), Positives = 193/563 (34%), Gaps = 71/563 (12%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
           A+ +   Q       L       +       +   +   F    PHY  +   L+   + 
Sbjct: 4   ALRNIWTQARGKWAGLPARSRRNVIIAAAALLAALLVVVFAATRPHYVTIMEGLDDKSLG 63

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
           ++   L    I   I   G+++ VP+    +ARI LA  GLP S  ++   +     S G
Sbjct: 64  QVQQELDTLKIPNEIQ--GTAVLVPARYADEARIQLAMAGLPQSGYDAYSGI---TTSLG 118

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI-GARPTASVMIRAI 180
            T     +  + AL+  ++ TI  I+G+ +A+VHIVMP    F         ASV +   
Sbjct: 119 ETQDEFNLQVLNALQQSLSSTISDINGVESAQVHIVMPQQQLFVTQPTTDAKASVFVDLG 178

Query: 181 N--PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME------RNILGKSLS 232
                       I+ LVA +VP L +G+VTV+D  G +L+++  +             L+
Sbjct: 179 PGVQLSSAQVYGIQQLVAHSVPGLTVGNVTVVDQYGNVLSSDMAQGGSSSAVGAASSELA 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
           + + ++++++  +   L   +G +N    V A +  +  Q                  S+
Sbjct: 239 MREKLENDLQQTLISGLQQIVGAENAVVVVHANVTFNQTQTTTHTLINAPGSNTGFITSQ 298

Query: 293 DAQRSETSQPESAVTVEQNM--PHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
           + Q+S++S         Q    P+++         + N+      +NY  + ++  TT D
Sbjct: 299 EVQKSQSSSGSPGGAAGQAGSNPNLNSTYAAAGGGVTNSTTSNTITNYAYSYQNQQTTVD 358

Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG-DTITIT 409
             ++   S+ V++N          S D+    +  A+I   V +  G    +G + ++++
Sbjct: 359 PMQVLGYSVGVLLN----------SNDKNITPAVEAQIRNFVLSVLGTTPSQGKNVVSVS 408

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++ F                             +          +L     ++       
Sbjct: 409 AVPFANPMQAVPAAPGARTWVYALGGLLLGALVVAG--------YLVFRRRQQPAGEVIE 460

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
                  +  L   P++                                      +    
Sbjct: 461 IPAGETFEQPLEELPLTQE------------------------------------EVLRN 484

Query: 530 RLLHMIEINEERFAKILRKWARS 552
           +L+ + +   + FA +LR W   
Sbjct: 485 QLIQLAQHRPDDFASLLRTWLSE 507


>gi|260438808|ref|ZP_05792624.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876]
 gi|292808797|gb|EFF68002.1| flagellar M-ring protein FliF [Butyrivibrio crossotus DSM 2876]
          Length = 534

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 178/565 (31%), Gaps = 49/565 (8%)

Query: 3   ILDQLLQFFKS----GTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           + D+L   ++          + + ++  ++ +V I++ +     +       L      +
Sbjct: 1   MKDRLKAIWEKIKNFWLKFNKKQRILFVTIFVVIIVVIIVLSKVIGKKDMVKLRACSNET 60

Query: 59  DVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
           +V  I   L++ NI   + +  ++I V  S   +A++ L +  + S+       +    +
Sbjct: 61  EVVEIRNLLNDNNISATVDEY-NNIFVDDSDYVEAKLVLGSNNISSAGYTLDDAV---SS 116

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM-GSFRKIGARPTASVMI 177
           S   T  + +      LE +  + ++S+  I +ARV+I  P+   S          + ++
Sbjct: 117 SLSTTETVMKEKYTAYLESKFKQDLESMDAIKSARVNISYPETGNSIFSETQDAKITAVL 176

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE--MERNILGKSLSIVQ 235
                   + AEAI  L+A  V N +   V ++DS   +L +            +  +  
Sbjct: 177 DLKKELSDEQAEAIGLLLATNVGNDNTNSVIIVDSQSNVLYSGNKANSSFTSNSTQKVKA 236

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY-DPDSKVER-SIRLSKD 293
            +++ I       + +    ++ +  +  ++N D  ++ +  Y  PD             
Sbjct: 237 MLENAIIKGAEDLIYSTRLYNDVQIMINLDVNFDNVEVVDHKYIAPDGTDNGLPTHSYVI 296

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
               + +        E N        +              + ++  N     T+    +
Sbjct: 297 NSEGQLATAGGNPGTESNDSDTDYDIINSDGKSSKYTLS--KYDWVQNEVITTTSKTPGE 354

Query: 354 L--ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSM 411
           +  +  S+A+V  K  +             D    E  +  S       +      + + 
Sbjct: 355 VNLKNSSMAIVCIKNTILTEEEAEEQGLLDDMTWEEYKQANSEPVETTVQDNILNAVATG 414

Query: 412 DFLENQLFNSGTVQVSFMD----ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNID 467
             +     +                S +   VI  ++ ++   ++ F+ + + R +   +
Sbjct: 415 SGIAAGNVSIIAYNTMTFFDKEVTSSSNPWFVIQIILAVLIAGVLIFIIIRSTRPVAVEE 474

Query: 468 DAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQS 527
              +  V      +                               +     I+     ++
Sbjct: 475 TEPELSVEDMLATT----------------------------KQQQPPVEEIDLQDKSET 506

Query: 528 DLRLLHMIEINEERFAKILRKWARS 552
              +   ++ N E  A +LR W   
Sbjct: 507 RKAIEKFVDENPEAVALLLRNWLNE 531


>gi|266623336|ref|ZP_06116271.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479]
 gi|288864874|gb|EFC97172.1| flagellar M-ring protein FliF [Clostridium hathewayi DSM 13479]
          Length = 539

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/517 (13%), Positives = 163/517 (31%), Gaps = 43/517 (8%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y  L+  +   + N I   L+   +  + +  G  ++VP + VG   + ++  G P ++
Sbjct: 54  EYVVLFPGISREENNEILAVLNGRGVGAKRNAEG-EVTVPENQVGDIMLDMSELGYPKTA 112

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
               +++F     F  T F +    +  L+  I RT++ ++GI  A V + + D  ++  
Sbjct: 113 LP--FDIFSDNMGFTTTEFEKRQYLLLNLQDRIERTLKDMNGIKNAIVTLNVSDDSNYVW 170

Query: 167 IGARP--TASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM 222
                  T +V +  +       +   AI++L+A +VP L   +VTV+++       ++ 
Sbjct: 171 DDQGADSTGAVSLTLMPDCELSPEKVGAIKNLIANSVPRLLPENVTVVNAETMQEMVSDD 230

Query: 223 ERNILG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYD 279
              +       L     ++  ++  I   L         R +    ++ D     ++ Y+
Sbjct: 231 VGGLTSYGLGRLDFETKVEKRLQDKIMNVLTLAYPPGQIRVSATVVIDYDKMITEDLQYE 290

Query: 280 P--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           P  + +       +  +   +          E N    +        +           +
Sbjct: 291 PQDNGQGVVEHYKTGQSVNGQGGGAGGVAGEENNTDIPTYGAAGTGGANGANGDYYRDVD 350

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATG 397
           Y +         DN KL++ ++A+ VN                 +S   ++    S A  
Sbjct: 351 YLVGYIKKQIEKDNVKLQKATVAITVNDSN------------LTESKKQQLIDAASKAAN 398

Query: 398 INSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGL 457
           I         I    F +     +   +   + + +     +   ++             
Sbjct: 399 IAPE-----DIVVSSFQQIASDKTPEPEKPVIPVTAPGVGGIDPRILIAGAAA------- 446

Query: 458 HALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQS 517
                           +  +              G    D + LD    +    S     
Sbjct: 447 ------GIFLFLVLLFLILRHRKKKQRKEDQELFGPFEGDAVELDRDIAERAEESAVENR 500

Query: 518 RINSYVS-KQSDLRLLHMIEINEERFAKILRKWARSE 553
             N  V  +    ++    E N E  A ++  W + +
Sbjct: 501 LTNIPVKPQDPVNQVRSFAEDNPEIIASMISNWLKED 537


>gi|323174686|gb|EFZ60306.1| flagellar M-ring protein domain protein [Escherichia coli LT-68]
          Length = 173

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           G++ F +++   RALEGE++RTI++I  +  ARVH+ MP    F +    P+ASV
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASV 173


>gi|323186389|gb|EFZ71738.1| flagellar M-ring protein domain protein [Escherichia coli 1357]
          Length = 173

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M       +  +    L     + L       + + +A   +  +P Y  L+  L   D 
Sbjct: 1   MNAAAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDG 60

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
             I   L++ NI +R S+   +I VP+  V + R+ LA QGLP   +  G+EL D+   F
Sbjct: 61  GAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KF 118

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           G++ F +++   RALEGE++RTI +I  +  ARVH+ MP    F +    P+ASV
Sbjct: 119 GISQFSEQVNYQRALEGELSRTIATIGPVKGARVHLAMPKPSLFVREQKSPSASV 173


>gi|283782092|ref|YP_003372847.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like
           protein [Pirellula staleyi DSM 6068]
 gi|283440545|gb|ADB18987.1| Flagellar biosynthesis/type III secretory pathway lipoprotein-like
           protein [Pirellula staleyi DSM 6068]
          Length = 553

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/579 (13%), Positives = 160/579 (27%), Gaps = 55/579 (9%)

Query: 1   MAILDQLL-QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEV 57
           M   ++   Q  +   S+     L    +++V ++       +  +   + L        
Sbjct: 1   MDFFNKAAAQLTELVRSMSPGTRLATGLLLIVVVVSIGYLFQYQVTSGDEYLLDGRPFSG 60

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDK 116
           +++  I  A ++A +  + + +G+ I +P          LA    LP+       E    
Sbjct: 61  AELTNIESAFAQAGLG-KSTVDGNRIRIPRGQKEIYLAALAENDALPADFYRYLDEAAAS 119

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              F  +  M+ + +  A + E+A  I  + G+ AA V       G   +   +     +
Sbjct: 120 DTPFTSSRSME-MKKWNAKQKELALIISRMKGVEAATVQYDEELKGGLTRSKQKTAMVAV 178

Query: 177 IRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS---- 232
             A         ++IR+++A+A   LD  D+TV D T  L        +           
Sbjct: 179 QTAGGALEDAQLKSIRNVIASAYAGLDRRDITVTDMTSGLSYGGGSSTDGSMSEEDSIYA 238

Query: 233 -IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLS 291
              Q  + + +  I   LA   G       V  EL+ +     + +      V       
Sbjct: 239 AHKQKYERDWQRKIADQLAMIPG---VIVGVNVELSPELSHQSQTIKLDAKPVAVESNEF 295

Query: 292 KDAQRSETSQPESAVTVEQNMPHVSD---RKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
              Q S +  P        N                  + ++ + E  N     +     
Sbjct: 296 TKEQSSTSPSPAGRPGAIPNGVGNQPVAVNNTSSANESQTSESRSEVRN-VPGHEQTVMK 354

Query: 349 HDNYKLERLSIAVV--------VNKGRLTEVLGRSADQGKIDSYLA-------EINKIVS 393
                   ++ ++         + + R  +  G    Q               ++ + V 
Sbjct: 355 RAPLVPTVVTASIDIPASYFTRIWRERNPQPAGAPPKQPDAAEIAKIETETKGKVQETVR 414

Query: 394 AATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
                 S+  +     ++      L  S   + S  +  +  F +    L  L   +   
Sbjct: 415 NLLPPVSQGTNPYPHIAVA-TYTDLPGSPMPEASIAETATAWFGSNWQTLAVLGVGMFAL 473

Query: 454 FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
            +     R L             K   +         +             N        
Sbjct: 474 VMLRSMTRPLPLPPAPANASSSLKIADTDADDDEEAASPASALRRRLAGGPN-------- 525

Query: 514 NLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                            L  M++ + +  A ILR W   
Sbjct: 526 -------------IKDELRDMVKEDPDAAANILRNWIGD 551


>gi|87307391|ref|ZP_01089536.1| probable polar flagellar M-ring protein FliF [Blastopirellula
           marina DSM 3645]
 gi|87290131|gb|EAQ82020.1| probable polar flagellar M-ring protein FliF [Blastopirellula
           marina DSM 3645]
          Length = 546

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/575 (16%), Positives = 186/575 (32%), Gaps = 58/575 (10%)

Query: 1   MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEV 57
           M  L++   Q      S+     +I   +I+V +  F          H   L     ++ 
Sbjct: 1   MDFLNKAFEQIKDLFFSMTPGSRIIAGLLIVVIVASFAFLFQGGMFEHDAALLAGAAVDP 60

Query: 58  SDVNRISVALSEANID-FRISDNGSSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFD 115
           +D   +  A +   +D +RI   GS I +P +   +    +     +P     S  +  D
Sbjct: 61  ADQKAVLAAFAGEGLDDYRI--EGSQIYIPRAKRAEYVAAMVKHNAIPPEFHESMEDAVD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
             N F  +   +   +  A E ++A  ++ + GI  A VH  + D G F +     TASV
Sbjct: 119 NANPF-ESEQHRSDRQKIAKEKDLALVLRKMRGIEFASVHYDVEDKGGFPR-RKVYTASV 176

Query: 176 MIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           ++R +           +IR+ VA ++  L    V+V D   +   + + E        + 
Sbjct: 177 VVRPLGSEEIDQALVRSIRNYVAYSIAGLSSEHVSVTDLNSRRTYSGDTENPAEDAYAAR 236

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
            Q  ++  +  I  AL    G       V  EL+    Q  E +      +       K 
Sbjct: 237 KQFFENSWQDKIAAALNYIDG---VNVTVNVELDPKMNQREERLEHGARPIALLTSAQKR 293

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            + S+  +      +    P+        P    + ++  E++    +   + +   +  
Sbjct: 294 TESSKVPKEGGRPGLAAQAPNQQAELTTAPARESSMEESSEETASVTDKTLMLSETASLT 353

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSY-------LAEINKIVSAATGIN------- 399
            +++ + V V +     +  +                 L +I + V  +           
Sbjct: 354 PQQVRVVVTVPQDYYAGIWNKQNPPALGAQPTTPDAGVLKKIEEEVKKSIESQVVTLLPP 413

Query: 400 SRRGD----TITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
              GD     + +TS+   +        +  + +  L  ++ TV    V L   L+    
Sbjct: 414 QPPGDDPYPQVHVTSVTRTDQPTLAEPALADTAILWLGANWQTVAMIGVGLFALLM---- 469

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
               LR +      +        + +PP        G M                    +
Sbjct: 470 ----LRSMVRSQPDEPKIDNSIRLATPPQEEEEDDAGDMSG------------------M 507

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
             +  +  S      L+ M+  + +  A IL+ W 
Sbjct: 508 LKKRFTKNSPNLKDELIEMVREDPDTAAGILKNWI 542


>gi|160939666|ref|ZP_02087014.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437457|gb|EDP15221.1| hypothetical protein CLOBOL_04558 [Clostridium bolteae ATCC
           BAA-613]
          Length = 535

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/518 (15%), Positives = 170/518 (32%), Gaps = 43/518 (8%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
           N+  Y  L+  +   + N I   L    +  + +D G  ++VP   +G   I ++  G P
Sbjct: 51  NAGSYVTLFPGISREENNEILAVLGGRGVAAKRNDEG-EVTVPEDQLGDIMIEMSELGYP 109

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
            ++    +++F     F  T F +    +  L+  + RT++ ++GI  A V + +PD  +
Sbjct: 110 KTALP--FDIFSDNMGFTTTEFEKRQYLLMNLQDRLERTLKDMTGIKNAIVTLNVPDESA 167

Query: 164 FRKIGARP----TASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
           +           + S+ +        +   AI++LVA +VP L    VTV+++       
Sbjct: 168 YVWEDEDSGSTGSVSLTLMPSYDLSPEKVSAIKNLVADSVPRLAPERVTVVNAETMQEMV 227

Query: 220 NEMERNIL--GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           ++   N       L     ++  ++  I   L      D  R +    ++ D      + 
Sbjct: 228 SDDIGNTAYGLNRLDFEAKVEERLQNKIKNVLTLAYSPDKIRVSATVVIDYDKMITENLE 287

Query: 278 YDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQ 335
           Y+P  + +                         E N    +        + + T      
Sbjct: 288 YEPQENGQGVVDHYRESRGVAGGQIGAGGIAGEENNTDIPAYGTAGTGGTAQGTGDYYRD 347

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
            +Y ++        DN KL++ ++A+ VN   LTE   +        +       IV ++
Sbjct: 348 VDYLVSYIKKQIEKDNVKLQKATVAITVNDDNLTESKKQQLIDAASKAANIAPEDIVVSS 407

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
                +             E           + +D    +    I A   ++  LL+ FL
Sbjct: 408 FREVPK-------------ETAPAKPALPVQAPVDTGIDYRTIAIAAGAGILLFLLILFL 454

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
                RR    +D +        +     +        + ND   +              
Sbjct: 455 IFGRRRRRQMKEDQELFAPFEGEVPPSADMEERAEEAAVQNDLGRMQV------------ 502

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    +    ++    ++N E  A ++  W + +
Sbjct: 503 -------NPEDPVEQVRSFAQMNPEIIASMISSWLKED 533


>gi|47566129|ref|ZP_00237167.1| flagellar M-ring protein, putative [Bacillus cereus G9241]
 gi|47557046|gb|EAL15376.1| flagellar M-ring protein, putative [Bacillus cereus G9241]
          Length = 515

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/559 (13%), Positives = 183/559 (32%), Gaps = 60/559 (10%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     L++ + +L  +    A  +F     Y  +Y  L  +D   I+  
Sbjct: 1   MEKLKNVFQSLKTWHKLVIGAALLAIVT--GALLYFTLPDKYVVVYQNLNDADKQEITAE 58

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           LS+  +D++++ +G SI V  +     R  +   GLP +S  SG E+  + +S G +   
Sbjct: 59  LSKLGVDYQLAADG-SIRVQKNDAPWVRKEMNGMGLPFNS-KSGEEILLE-SSLGSSEQD 115

Query: 127 QEITRVRALEGEIARTI-QSISGIVAARVHIVMPDMGSFRKIGA---RPTASVMIRAINP 182
           +++ ++   + ++ + I ++ + +  A V I +P+  +             +V ++    
Sbjct: 116 KKMKQIVGTKKQLEQDIVRNFATVETANVQITLPEKETIFDEEKAKGTAAITVGVKRGQL 175

Query: 183 SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG-----KSLSIVQAI 237
                   I+ +++AAVP +   +V+V+DS   +++    E +        K + +   I
Sbjct: 176 LTADQVAGIQQMISAAVPGVKAEEVSVIDSKKGVISKGADEAHSSSSSSYEKEVEMQHQI 235

Query: 238 QHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS 297
           + +++ +I+  L      + ++      +N D    +   Y     +       + +   
Sbjct: 236 EGKLKQDIDATLMTMFKPNEYKVNTKVSVNYDEVTRQSEKYGDKGVLRSKQEQEETSTAQ 295

Query: 298 ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERL 357
           E +  +    +  N    +          +  +       YEI+           +L + 
Sbjct: 296 EGADTKQGAGITANGEVPNYGTNNNKNGNKIEN-------YEIDKTVETIKKHP-ELTKT 347

Query: 358 SIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR-----RGDTITITSMD 412
           ++ V V+   L +                   + +  A G+ +          + + ++ 
Sbjct: 348 NVVVWVDNDTLVKRRIDMTT----------FKEAIGTAAGLQADPNGNFTNGQVNVVTVQ 397

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F           +      ++      I A +  +G L+   L                 
Sbjct: 398 F---DQPKEEKPKEPEESGINWWLFGGIPAGLLAIGGLVWFLL----------------- 437

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
               +                      +               +           D ++ 
Sbjct: 438 ---ARRKRKKEEEEYEEYLAEEEVAASSESIMEIPEEKIVPEPKPEPEEPKEPTLDEQVQ 494

Query: 533 HMIEINEERFAKILRKWAR 551
              + + E  AK+++KW  
Sbjct: 495 DATKEHVEGTAKVIKKWLN 513


>gi|224174161|ref|XP_002339855.1| predicted protein [Populus trichocarpa]
 gi|222832385|gb|EEE70862.1| predicted protein [Populus trichocarpa]
          Length = 312

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 7/215 (3%)

Query: 1   MAI----LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLE 56
           M +     ++  Q+F    SL  TR L L ++I V +   ++  F+   P    LY  L+
Sbjct: 99  MNMPLLNAEKAGQWFDRLQSLQITRRLGLMAMIAVAVAAGLSVFFWSQKPGMVPLYTGLD 158

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
                  +  L  A I F +      I+VP   +  AR+ LA  GL + S   G+EL ++
Sbjct: 159 QKATAEATDLLRAAQIPFALDPATGGITVPEKNLHDARLKLAGSGL-TDSGKLGFELMER 217

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
              FG++ F++      ALE E++RTI ++  +  +RVH+ +P   +F +     +ASV 
Sbjct: 218 DPGFGVSQFVESARYQHALETELSRTINTLRPVRDSRVHLAIPKPSAFTRQRDVASASVT 277

Query: 177 IRA--INPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
           +             +AI H+VAA++P+L    VTV
Sbjct: 278 LELRGGQQLERSQVDAIVHMVAASIPDLAPERVTV 312


>gi|168334544|ref|ZP_02692700.1| flagellar M-ring protein FliF [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 459

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/486 (13%), Positives = 153/486 (31%), Gaps = 40/486 (8%)

Query: 79  NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +G +I V    +  A+I L  + +P         +    NS   T   +    +   + +
Sbjct: 6   DGRTIQVNEEDLNTAKIILTRENVPRGDYTFYDAI---TNSMSTTEAEKRTKLIYLKQVD 62

Query: 139 IARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA 197
           +   +  + GI  A V + +P+   SF       +ASV++           E I  L++ 
Sbjct: 63  LENILMGMEGIAEATVQLNVPEEKNSFIASQMESSASVVLTLHRQISDNQIEGIARLLSN 122

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEM-ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
           AV NL + ++T+LDS   +L + +           S+  + + +I   +   L+     D
Sbjct: 123 AVDNLKLENITILDSDSNVLFSGDEFGEMTASDQQSLKSSAEKDIVNKLTTLLSPIY--D 180

Query: 257 NFRSAVVAELNMDTQQIREI---VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
               +    L+ D  +  +        DS+     + S+    +   Q   A  ++ N+ 
Sbjct: 181 EVAISPNLILDFDYFEQTKEEYTTPITDSQTGLVDQESRRNYEATNIQDGFAPGLDPNVE 240

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN--KGRLTEV 371
            V +       S        +   Y+ N        +   ++  + +V +N  K  + + 
Sbjct: 241 DVPEYVAGNELSGNYEGGTSDII-YKHNKTLSNEIKNIGTIDYNNSSVAINLTKYNVYDE 299

Query: 372 LGRSADQGKIDSYLA-EINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
                      ++   ++   V+    +     D I           +           +
Sbjct: 300 ALLEDTLPDDQTWAEFKLANDVTNILVVEQATIDAIK-MGAGLENVAVIAYEKPVFIDKE 358

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
             +     VI  ++ L    ++  + +   + +  +    + E      ++ P       
Sbjct: 359 PFTLQTEDVIPYILLLALGAVIVVVMIRFRKPVEEVVTEDEFEFEDLLPVAGPEEEEE-- 416

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
                                  +    I      ++  ++   I+   E  A +LR W 
Sbjct: 417 -----------------------DSLQDIELKEVIETKAKIDKFIDEKPEAVAGLLRNWL 453

Query: 551 RSEIED 556
             +  D
Sbjct: 454 EEDWGD 459


>gi|88800454|ref|ZP_01116018.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
 gi|88776784|gb|EAR07995.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
          Length = 318

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 123/339 (36%), Gaps = 31/339 (9%)

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVE 285
           +  +     + ++  +   +N  L+  +G D F++ V A+++    +  E +++PD   +
Sbjct: 1   MTNRQFEYQRKVEESMLARVNSILSPIIGGDKFQAEVSADIDFTKVEQAEELFNPDLIAK 60

Query: 286 RSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV------PLPRSLENTDKKEEQSNYE 339
           RS +   + +  E            N P                     + + E   NYE
Sbjct: 61  RSEQTISEERVGEEQ--GGIPGALTNQPPTDAEAPEEVDGQGQANGPPRSSRDEATINYE 118

Query: 340 INTKSIATTHDNYKLERLSIAVVVNKGRLTEVL-GRSADQGKIDSYLAEINKIVSAATGI 398
           ++     T     ++ RL++AVVV+   +T+   G +  Q   ++ L  +  +V  A G 
Sbjct: 119 VDRTLSYTQFQQGRVRRLTVAVVVDDLEVTDPETGETVTQAWDEASLQRLRTLVQDAVGY 178

Query: 399 NSRRGDTITITSMDFLENQLFNSGTV---QVSFMDILSRHFATVINALVFLVGTLLVTFL 455
           ++ RGD+I + + +FL  Q          +  F +               ++  L V  L
Sbjct: 179 DASRGDSINVINSEFLAEQDAVEQVPFYAEPWFWE-----------IAKQILAGLFVLIL 227

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
               LR       AK  +   +S          V   L+ +D ++L + ++         
Sbjct: 228 IFGILRPAVRNLLAKGEDEQAESDEDAALAQLDVDEDLIADDKVSLSAVDEYNLPGPSES 287

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
             R            L  +I  +  R A +L++W  S  
Sbjct: 288 FER--------QLDALRGLIAEDPGRVALVLKRWIMSND 318


>gi|74317106|ref|YP_314846.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF
           [Thiobacillus denitrificans ATCC 25259]
 gi|74056601|gb|AAZ97041.1| flagellar biosynthesis/type III secretory pathway lipoprotein FliF
           [Thiobacillus denitrificans ATCC 25259]
          Length = 381

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 87/298 (29%), Positives = 135/298 (45%), Gaps = 8/298 (2%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           L    +        R L LA +ILVP+    AA  + N P Y  LY +L       +  A
Sbjct: 5   LSFLRELVAEASPWRRLTLALLILVPLGALAAAYIWFNPPAYRVLYGQLSDRVGGEVIGA 64

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L +  I +R+S     I VP   +  AR  LAA GLP S ++   ++ ++  SFGL+S  
Sbjct: 65  LEQLGIPYRLSAGDGRIEVPVDTLHVARYRLAALGLPRSDADVEADV-ERAPSFGLSSLQ 123

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSV 184
           Q+  + RALE E+AR+IQS+  +  ARVH+ +P +  F +   R TA+V++R        
Sbjct: 124 QQQRQQRALEHELARSIQSLEAVELARVHLALPKVSPFLRDAPRATAAVLVRLRPRAQLS 183

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN 244
            +    I+ LVAAAVP +   DV VLD  G +L     E         +  A++ ++   
Sbjct: 184 TEQVTTIQTLVAAAVPRMKRADVQVLDPRGVVLGGAAPEIEPS-----LRVALEQDLARR 238

Query: 245 INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQP 302
               L  +LG +     V A L   T +         +   ++  L K  + +   + 
Sbjct: 239 ALAVLTPWLGAERVSVQVTATLEDATTRETVERMRRVAGEGQARPLEKTVRTTVEPEG 296


>gi|325473786|gb|EGC76974.1| FliF protein [Treponema denticola F0402]
          Length = 567

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 96/600 (16%), Positives = 209/600 (34%), Gaps = 80/600 (13%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY----VK 54
           M     +   +F        + +  I+  VI++ ++L +    + + P    +       
Sbjct: 1   MNEKFNNLKTKFGTLWGKWTKLQKGIIIGVIVLALVLVVVLGRWSSKPTSVPVIDMAITD 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSSSSNSGY 111
           +++ D  RI + ++E N+   IS +G  ISV      + R+    L    +P ++S    
Sbjct: 61  VDLRD--RIILRINEENVKTTISSDG-IISVADEATAR-RMRTILLREDLIPKNTSPW-- 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
             F  V  +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F       
Sbjct: 115 -AFFDVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPA 173

Query: 172 TASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----M 222
           TA+V+I     S   +     E I+ ++  AVP L   D+T+ D++G  L   E      
Sbjct: 174 TATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDAD 233

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQ---------- 271
              ++ K    +  ++ +   NI   L    G D  R   V  +++M  +          
Sbjct: 234 RLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPT 293

Query: 272 ---QIREIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
              +        DS+V +S+ +S +            P+  +  E   P           
Sbjct: 294 VIKEDNPETSYDDSQVVQSVTVSSENATTVWEGSGINPQGPMGTEGQTPP---SYQDTRN 350

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG----------- 373
            +  + +   + N+ +++  I       K+ R +++V ++     +              
Sbjct: 351 LVGRSTQTITKENHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVI 409

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
               +      + +  KI+  A G ++ R D++++ ++       F        +   L 
Sbjct: 410 EREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LEDKEYFKALQ 467

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
           R    +++     +  +L+ F+    + R        + E   +                
Sbjct: 468 RQTIFLLSLA--GIALILLFFILYRIISREIERRKRLREEELLRQAQLERERMLY----- 520

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                        D      ++   +     ++     ++M   + E  A ++R W   E
Sbjct: 521 -------------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVALLIRTWLMEE 567


>gi|296123331|ref|YP_003631109.1| secretory protein YscJ/FliF family protein [Planctomyces
           limnophilus DSM 3776]
 gi|296015671|gb|ADG68910.1| secretory protein YscJ/FliF family protein [Planctomyces
           limnophilus DSM 3776]
          Length = 532

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 100/552 (18%), Positives = 189/552 (34%), Gaps = 40/552 (7%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LEVSDVNRISVALSEANIDF 74
           +   + + L    L+ +  F    +  N+     L         ++     AL EA +  
Sbjct: 1   MNSAQRISLIVAPLILLAGFGFLYWSNNTSGMVALSWGKVFTTEELIAAEHALMEAGLT- 59

Query: 75  RISDNGSSISVPSSMVGKARIHLAA-QGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
                G  + VP++   +    L     +P    +   + ++ ++ F +T   +   R  
Sbjct: 60  DFQRQGRMLLVPAAEKDRYNAALLEFDAMPEDLGSQLLKHYESLSPF-ITEKQRHEMREA 118

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAI 191
            L  E+A+T+++I  +  ARV I  P+  +        TA+V I         +    +I
Sbjct: 119 MLLKEVAQTLKAIPNVEDARVVIANPNRRNSWSQKGTVTANVTITPKKGRELSTRLVASI 178

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL-SIVQAIQHEIEMNINKALA 250
           R  VA+ VP+L   DVTV D   ++  A +   + L   L   ++ +  + E  I+K+L+
Sbjct: 179 RAAVASMVPDLKTSDVTVFDPVNEVTYAGDAADDPLSSQLVQRIRELTKQYESQISKSLS 238

Query: 251 AFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQ 310
              GV N    V  E N+ +  IR    DP                     P        
Sbjct: 239 YIPGV-NVTVHVDIE-NLKSSVIRTQQIDPKKSAPVISNEFTVNDTQTQRAPRGEPGQVA 296

Query: 311 NMPHVSDRKVPLPRSLENTDKKEEQSN---YEINTKSIATTHDNYKLERLSIAVVVNKGR 367
           N P          R+ + T+      N   +EI+           K  ++SI+V  +  R
Sbjct: 297 NRPASVGGSAGSDRNRQMTESDNRVVNGVSFEIS--EKQLLAAMPKAVQVSISVPRDYYR 354

Query: 368 LTEVLGRSADQGKID-SYLAEINKIVSAATGINSRR-------GDTITITSMDFLENQLF 419
                  +A +     + +  I K V A+   +  R        D I ++++D L  +L 
Sbjct: 355 GIAAQRTAAGEKDPALTEIPAIEKEVLASVSKSVNRLIPADSPDDAIVVSTVDTLAKELP 414

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                         R + + +    F +   +        + R      A+     G S 
Sbjct: 415 TVTIPWTETAWQFFREYGSTMALGAFAIYVAM--------MLRKSMGSLAQANASPGDSR 466

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
                  + +     P   +A+++      +      +R           +L  ++  N 
Sbjct: 467 TDNANGMNPLNPSGGPEAAMAMNALQGASAALPPKPATR---------RDQLQAIVRDNP 517

Query: 540 ERFAKILRKWAR 551
           E  A +L KW +
Sbjct: 518 EATAALLGKWIQ 529


>gi|149178729|ref|ZP_01857312.1| probable polar flagellar M-ring protein FliF [Planctomyces maris
           DSM 8797]
 gi|148842427|gb|EDL56807.1| probable polar flagellar M-ring protein FliF [Planctomyces maris
           DSM 8797]
          Length = 538

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 88/574 (15%), Positives = 171/574 (29%), Gaps = 60/574 (10%)

Query: 1   MAILDQL-LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY--VKLEV 57
           M  + ++  QF     ++  ++  IL SV L+ ++ F    F  +   Y +L        
Sbjct: 1   MDTIKKIYQQFSNLFQTMSGSQRAILLSVPLLMMLAFGFLFFRDSQSSYVSLSLGKDFTT 60

Query: 58  SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFDK 116
            +V      L  A +    S  G  I VP + V +    L   G LP+  ++   E F+K
Sbjct: 61  EEVIHAEEVLLRAGLT-DFSRKGQRIMVPQNEVPRYNAALIEGGGLPTDWASEWQEQFEK 119

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            + F     +Q + R  AL  ++ R I++I  I  A V                   + +
Sbjct: 120 SSMFVSKDQLQ-VMRDIALGNQLRRMIRAIPAIEDASVMWARSKKRLRWNNTTPEVTATV 178

Query: 177 I---RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST-GKLLTANEMERNILGKSLS 232
           +   R           ++R  V+  VP+L    VTV D + G   TA++       K +S
Sbjct: 179 MVKPRPGRELTPVLVTSLRAAVSTMVPDLTTDSVTVFDQSTGTSFTADDKNEAFDSKFIS 238

Query: 233 IVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSK 292
            V       +  I  +L+     D   +  V   N+     R+     D  V    +   
Sbjct: 239 WVNKHTKNYQDKILDSLSYI--PDVIVNVNVDVENLKRYVERKQEISTDGSVTLQSKEQS 296

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE-QSNYEINTKSIATTHDN 351
             +        +      N P+         ++ + T+   E  +               
Sbjct: 297 TERSLVEKPTRAEPGARSNQPNSLAVARGNEKNEKVTETNNEATTAPSFTWTEKEFVAAM 356

Query: 352 YKLERLSIAVVVNK------GRLTEVLGRSADQGKIDSYLAEINKIVSAATGI------- 398
               ++S+++  +        R  +     AD        A I   V  +          
Sbjct: 357 PSTVQVSVSIPEDYYSAVALKRGIKKGEAEADIAAFKQATAAIQTEVETSIQKHVQKLIP 416

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           +    D +++ S   ++ ++          +      + + +   +F +  L +      
Sbjct: 417 SQSATDAVSVASYVRVDAEVPEIALPLTESVGEFVSQWGSTLGLGLFAIWALWML----- 471

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
                                          +   M   N             S   +  
Sbjct: 472 -----------------------------NKSMPQMEEVNSEEIDLPLKRPVDSTPEEES 502

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +           +  ++  N E  A +L KW  S
Sbjct: 503 VKPKKEPTQRDEVQLLVRDNPEVAAMVLSKWIHS 536


>gi|2105148|gb|AAB57899.1| FliF [Treponema denticola]
          Length = 567

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/596 (15%), Positives = 205/596 (34%), Gaps = 72/596 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY----VK 54
           M     +   +F        + +  I+  VI++ ++L +    + + P    +       
Sbjct: 1   MNEKFNNLKTKFGTLWGKWTKLQKGIIIGVIVLALVLVVVLGRWSSKPTSVAVIDMAITD 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSSSSNSGY 111
           +++ D  RI + ++E N+   IS +G  ISV        R+    L    +P ++S    
Sbjct: 61  VDLRD--RIILRINEGNVKTSISSDG-IISVADVEATARRMRTILLREDLIPKNTSPW-- 115

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
             F  V  +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F       
Sbjct: 116 -AFFDVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPA 174

Query: 172 TASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----M 222
           TA+V+I     S   +     E I+ ++  AVP L   D+T+ D++G  L   E      
Sbjct: 175 TATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDAD 234

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQ---------- 271
              ++ K    +  ++ +   NI   L    G D  R   V  +++M  +          
Sbjct: 235 RLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPT 294

Query: 272 ---QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
              +        DS+V +S+ +S +   +      +                     +  
Sbjct: 295 VIKEDNPETSYDDSQVVQSVTVSSENATTVWEGRINPQGPTGTEGQTPPSYQDTRNLVGR 354

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSAD 377
           + +   + N+ +++  I       K+ R +++V ++     +                  
Sbjct: 355 STQTITKENHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYINLNGVIEREY 413

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
           +      + +  KI+  A G ++ R D++++ ++       F        +   L R   
Sbjct: 414 KPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LEDKEYFKALQRQTI 471

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            +++     +  +L+ F+    + R        + E   +                    
Sbjct: 472 FLLSLA--GIALILIFFILYRIISREIERRKRLREEELLRQAQLERERMLY--------- 520

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                    D      ++   +     ++     ++M   + E  A ++R W   E
Sbjct: 521 ---------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVALLIRTWLMEE 567


>gi|42526724|ref|NP_971822.1| flagellar MS-ring protein [Treponema denticola ATCC 35405]
 gi|41817039|gb|AAS11733.1| flagellar M-ring protein FliF [Treponema denticola ATCC 35405]
          Length = 567

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 96/600 (16%), Positives = 208/600 (34%), Gaps = 80/600 (13%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLY----VK 54
           M     +   +F        + +  I+  VI++ ++L +    + + P    +       
Sbjct: 1   MNEKFNNLKTKFGTLWGKWTKLQKGIIIGVIVLALVLVVVLGRWSSKPTSVAVIDMAITD 60

Query: 55  LEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPSSSSNSGY 111
           +++ D  RI + ++E N+   IS +G  ISV      + R+    L    +P ++S    
Sbjct: 61  VDLRD--RIILRINEENVKTTISSDG-IISVADEATAR-RMRTILLREDLIPKNTSPW-- 114

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
             F  V  +  T F +EI   RA+  E+ R ++++  I  A V + +P+   F       
Sbjct: 115 -AFFDVERYSRTDFEREIDVRRAITEEVKRHLKALDDIDDANVVVRIPEKALFESEQLPA 173

Query: 172 TASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----M 222
           TA+V+I     S   +     E I+ ++  AVP L   D+T+ D++G  L   E      
Sbjct: 174 TATVVITPAPGSDISTNRKKIEGIQKMLRLAVPGLKNEDITISDASGIPLNDFEIMKDAD 233

Query: 223 ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-SAVVAELNMDTQ---------- 271
              ++ K    +  ++ +   NI   L    G D  R   V  +++M  +          
Sbjct: 234 RLTLIEKQQKFIAKLERQYGANILTPLQKIYGEDRVRDINVKIDMDMSERSADTTEIRPT 293

Query: 272 ---QIREIVYDPDSKVERSIRLSKDA----QRSETSQPESAVTVEQNMPHVSDRKVPLPR 324
              +        DS+V +S+ +S +            P+     E   P           
Sbjct: 294 VIKEDNPETSYDDSQVVQSVTVSSENATTVWEGSGINPQGPTGTEGQTPP---SYQDTRN 350

Query: 325 SLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG----------- 373
            +  + +   + N+ +++  I       K+ R +++V ++     +              
Sbjct: 351 LVGRSTQTITKENHLVSSSQIKEVFLP-KMGRRTVSVNIDGVWEKKKDVNGKYIIKNGVI 409

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
               +      + +  KI+  A G ++ R D++++ ++       F        +   L 
Sbjct: 410 EREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LEDKEYFKALQ 467

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
           R    +++     +  +L+ F+    + R        + E   +                
Sbjct: 468 RQTIFLLSLA--GIALILIFFILYRIISREIERRKRLREEELLRQAQLERERMLY----- 520

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                        D      ++   +     ++     ++M   + E  A ++R W   E
Sbjct: 521 -------------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVALLIRTWLMEE 567


>gi|218512857|ref|ZP_03509697.1| flagellar MS-ring protein [Rhizobium etli 8C-3]
          Length = 316

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 166/316 (52%), Positives = 233/316 (73%), Gaps = 3/316 (0%)

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
           P++G+FRK   +PTASVMIRA   +   +A +IRHLVA+AVP LD+ DVT+LDS G+LL 
Sbjct: 1   PEVGNFRKAEQKPTASVMIRASAATGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLA 60

Query: 219 ANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV 277
           + +   N    +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V A+LN D QQI+E  
Sbjct: 61  SGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETT 120

Query: 278 YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP--LPRSLENTDKKEEQ 335
           YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P  +        P S + +DK+EEQ
Sbjct: 121 YDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGASGPESQDKSDKREEQ 180

Query: 336 SNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAA 395
           +NYEIN+++ ATT ++YK+E+LSIAVVVNKGR+ +++G  ADQ KID+YLAE+ KIV++A
Sbjct: 181 TNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASA 240

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            GI+++RGD +T+T+MDFLENQL    T  V  MD+LSR+ A +IN+L F+    +V ++
Sbjct: 241 AGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWM 300

Query: 456 GLHALRRLHNIDDAKK 471
           GL  L R  + + A  
Sbjct: 301 GLRPLVRSVSGNGASA 316


>gi|328947994|ref|YP_004365331.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489]
 gi|328448318|gb|AEB14034.1| flagellar M-ring protein FliF [Treponema succinifaciens DSM 2489]
          Length = 568

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 100/597 (16%), Positives = 206/597 (34%), Gaps = 73/597 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK--LE 56
           M       L    +        +  I+A++I+V I + +      + P    L+     +
Sbjct: 1   MNEWFKKNLETIKEKWAKWTTLQKAIVAAIIVVAIAVIVLMASMSSRPSTVRLFNGPVND 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115
             +   I   L + N+   +S +   ISV +S + K  R  L A+G   SS ++ Y LFD
Sbjct: 61  EKERELILSRLDQDNVKAYVSSDNY-ISVENSDIAKKYRSRLIAEGYAPSSLDA-YSLFD 118

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            V  +  T F  ++   RA E  + + ++S+ GI  A V++V+PD   F +     +AS+
Sbjct: 119 -VTRWSRTDFDDKVNWQRATETALKQQLESLDGIQRAEVNLVLPDEALFTENQNPTSASI 177

Query: 176 MIRAINPSVY----KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILG--- 228
           ++ A   S      +    I++L+ A V  L   ++ + D    +   +           
Sbjct: 178 VLYAKGNSDVLTDKRKIRGIQNLIKACVEGLRDENIVINDGASNVQINDFEGMAESDRIS 237

Query: 229 ---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRS-AVVAELNMDTQQIREIVY------ 278
              K   ++   +      + KAL      D  R   +  ++NM  ++     Y      
Sbjct: 238 NIEKQRKLILKQETTYTGLVLKALKGTFSDDRVRVANIKIDMNMSERKTTSKEYTGITIR 297

Query: 279 --DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
             +P++             S      +       PE    VE   P V          + 
Sbjct: 298 PDNPNTPYDDSEIVNSLTLSEETVNKSFTGTGYNPEGPAGVEGQNPPVYSDMS---NVVG 354

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RSA 376
            + ++  + NY +N K+++      +++R++++V ++                    +  
Sbjct: 355 KSTEEGVKRNYALNEKNVSEITSP-QIDRITVSVNIDGQWRKVYDENNRPILENGHLKRE 413

Query: 377 DQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHF 436
                   L    K+V  A G N  RGD++T+T++ F   +        ++++  L+R+ 
Sbjct: 414 YIPITPEQLVNTTKLVQDAVGYNKSRGDSVTVTNIPFDRTE--EQEKEDLAYIAQLNRN- 470

Query: 437 ATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN 496
                               L  +  +     A +               + +       
Sbjct: 471 --------------RTIMFSLIGIAIILIAFIAFRIISREIERRRRLAEEARIRQQEEER 516

Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
               L++  Q +          +      +     + M + + E  A ++R W   E
Sbjct: 517 QRALLEAQQQGMEVTMS-----VEERKRAELQENAIAMAKEHPEDVAMLIRTWLMEE 568


>gi|256112170|ref|ZP_05453091.1| flagellar MS-ring protein [Brucella melitensis bv. 3 str. Ether]
 gi|256261971|ref|ZP_05464503.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|265993596|ref|ZP_06106153.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str.
           Ether]
 gi|262764466|gb|EEZ10498.1| flagellar M-ring protein FliF [Brucella melitensis bv. 3 str.
           Ether]
 gi|263091455|gb|EEZ15991.1| flagellar M-ring protein FliF [Brucella melitensis bv. 2 str. 63/9]
 gi|326411310|gb|ADZ68374.1| flagellar MS-ring protein [Brucella melitensis M28]
 gi|326554599|gb|ADZ89238.1| flagellar MS-ring protein [Brucella melitensis M5-90]
          Length = 333

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 96/321 (29%), Positives = 167/321 (52%), Gaps = 2/321 (0%)

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 1   MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIA
Sbjct: 61  RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL+    
Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGA 180

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 299

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 300 ERVAAVLKQWIHETASGREAD 320


>gi|91791422|ref|YP_561073.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217]
 gi|91713424|gb|ABE53350.1| secretory protein YscJ/FliF [Shewanella denitrificans OS217]
          Length = 439

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 186/457 (40%), Gaps = 45/457 (9%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
           T+ +      +  ++L +   ++V       L+  L  + +   +  L  + I +++   
Sbjct: 8   TKKMRFFIAGISLMLLTLITLWWVIQDSKQVLFSGLSQATLTEYTAKLEASGIGYQV--E 65

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G+SI V SS   +AR+  A +    S++ +G+EL++  +  G T   Q    +RAL+GEI
Sbjct: 66  GTSIFVASSDSNQARVV-AMEDSIQSNNVTGFELYENSD-LGATERAQHANYLRALQGEI 123

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAA 197
            RT+   + I  ARVH+ +P    F        ASV +  ++    ++   EAI+ LV +
Sbjct: 124 ERTLTGFNYIKKARVHLTLPQKRLFMSQNQLTKASVTLFTVDHYQPRTIDIEAIKQLVVS 183

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDN 257
           AV +L +  V V+D  G+     E + ++   +L++ ++ +  +E  + + L A+    +
Sbjct: 184 AVEDLTIDQVVVIDGAGQ-WGVFEPQGDLSSPNLALRRSTESYLEQKVLQVLVAYFSASS 242

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
             +AV  ELN DT +I E         +  I      + +                    
Sbjct: 243 ISAAVAVELNTDTVKIHETKAIKGDGSQGLISSETKFEETH------------------- 283

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                  +   +     +  Y     +  T     ++ RL+ AV +N             
Sbjct: 284 ---LSDDNKPGSKTLRNEVTYAHGALTQETEQAPGQILRLTAAVSIN------------- 327

Query: 378 QGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFA 437
                   A+I++++    G +S+R D+I+++   F   ++       ++   ++ +   
Sbjct: 328 AEVAPELQAQISELIKNTIGFDSQRDDSISVSF--FYLPKVEPLPVTPMAVEPVVVKTVE 385

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
           +      FL+  L   F     +  L N  D+ + ++
Sbjct: 386 SNTWW-PFLLIGLGTLFSLSTGMFYLANKRDSTEQQL 421


>gi|17988496|ref|NP_541129.1| flagellar M-ring protein FLIF [Brucella melitensis bv. 1 str. 16M]
 gi|256042873|ref|ZP_05445819.1| flagellar MS-ring protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|260564110|ref|ZP_05834595.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989308|ref|ZP_06101865.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|17984287|gb|AAL53393.1| flagellar m-ring protein flif [Brucella melitensis bv. 1 str. 16M]
 gi|260151753|gb|EEW86846.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. 16M]
 gi|262999977|gb|EEZ12667.1| flagellar M-ring protein [Brucella melitensis bv. 1 str. Rev.1]
          Length = 333

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 96/321 (29%), Positives = 168/321 (52%), Gaps = 2/321 (0%)

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           ++ +I KALA +LG+ +F+++V A L+ D +Q +E  YDP+S+VERS+R+ +++  S  +
Sbjct: 1   MDDSIRKALAPYLGLGHFQTSVQAALDTDRRQTKETTYDPESRVERSVRVVRESGDSRNN 60

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIA 360
           + ++A  VEQN+P    +      S E TD++EE +NYE+N+ +++T  D Y ++RLSIA
Sbjct: 61  RNDNATGVEQNIPQEQIQNRNGESSTEKTDRREELTNYEVNSMTVSTVSDGYSIKRLSIA 120

Query: 361 VVVNKGRLTEVLGRSADQG-KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
           VV+++ RL +  G +      +D  + +I  +V+ A G+N+ RGD I +T+++FL++   
Sbjct: 121 VVIDQARLLQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDSAGA 180

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
           +   V   + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++ 
Sbjct: 181 DMEPVSAPWTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAG 240

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
               P        +       +           +   S +   +   + LRL  MIE++E
Sbjct: 241 EVATPNFIGGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDE 299

Query: 540 ERFAKILRKWARSEIEDRYTQ 560
           ER A +L++W       R   
Sbjct: 300 ERVAAVLKQWIHETASGREAD 320


>gi|32474826|ref|NP_867820.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica SH 1]
 gi|32445366|emb|CAD75367.1| probable polar flagellar M-ring protein FliF [Rhodopirellula
           baltica SH 1]
 gi|327539960|gb|EGF26559.1| polar flagellar M-ring protein FliF [Rhodopirellula baltica WH47]
          Length = 545

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/559 (12%), Positives = 167/559 (29%), Gaps = 26/559 (4%)

Query: 3   ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62
           +   L QF    +++     +I   ++   I+         ++P  + L      S+   
Sbjct: 2   LQTALDQFRSIYSTMPVPSRIIAGLLLTAIIVAMGFLVRGNSTPSSEYLLGGRSFSER-- 59

Query: 63  ISVALSEANIDFRISD------NGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELFD 115
               L  A + F  +D       G  I +P     +  +   ++  LP S   S     +
Sbjct: 60  ---DLDAAEVAFGNADLRGWTREGRRIKIPIESRSEFLKALESSASLPLSLRTSVQAAIE 116

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
           K + F      +      A   +IAR+I     +  ARV     +     +   +  +  
Sbjct: 117 KSSPFESNE-QRMARERNAKLLDIARSIMMFDEVRTARVEYDQGERMGLSRTRPQSASVT 175

Query: 176 MIRAI-NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIV 234
           +      P        I+ LV AA   +   DV V D+ G        + + L +     
Sbjct: 176 VEPEGIAPLSRDRIFQIKDLVRAAFAGMSTDDVVVTDTNGSSAFGLAEDDDPLSRKRREE 235

Query: 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           +        N        +G      A   E++         +   D     +    K  
Sbjct: 236 EERFEMKIRN------HLMGYGKIHVATHVEIDPTMSTETASLSYEDQPTTLNETSRKRE 289

Query: 295 QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEI-NTKSIATTHDNYK 353
             S    P      + N    +        +  +  K++E+++  +   +   T      
Sbjct: 290 TESSRPMPGGVPGAQTNALSSNRPVKLDATAQTSKTKEDERTSNRVAGQEYSTTRMAGLP 349

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++R+ +++ + +    +V  +   +   D  + +I ++ +        + +T        
Sbjct: 350 VKRVKVSIGLPRSYYKKVWTKQQLETNPDQTVDDIKQMETTDLVTLKEQTET---EIQQA 406

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
           +   L +    +  F  +    +  +    +    T  +    L    +   +       
Sbjct: 407 VTALLPDVAAGEDRFPLVQVWDYIDLPEPEMDSPATAAIALSWLSDSWQTLAMLGLAAAA 466

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           +            +A  T       + L +    +   +  +++             L+ 
Sbjct: 467 LLIARSSVKSLSGNADPTDFKEGFGLELPAPPIAVEEQTEKVEAM--EITGGSLQDELVA 524

Query: 534 MIEINEERFAKILRKWARS 552
           ++E N E  A ++R W   
Sbjct: 525 LVEDNPEVAANVIRSWVGE 543


>gi|88800453|ref|ZP_01116017.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
 gi|88776783|gb|EAR07994.1| flagellar M-ring protein FliF [Reinekea sp. MED297]
          Length = 268

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 7/212 (3%)

Query: 6   QLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISV 65
           ++         L   R   L   +   I L +    +     Y  L       D   +  
Sbjct: 50  RMHPLVVGFNKLTMMRQFGLLIGLAASIALGLGVVLWSQKETYRPLMNSTNSYDARELIE 109

Query: 66  ALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSF 125
            L   NIDF I  +   + V  + + +AR+ +A  GL S     GYEL D+    G + F
Sbjct: 110 VLQANNIDFDIDPSSGVLLVRQNDLHQARLAVAGAGL-SDDQTVGYELLDQDQPLGQSQF 168

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
           M+    +R+LEGE+ARTI SI+ +  ARVH+ +P+   F +     TASV          
Sbjct: 169 MENARYLRSLEGELARTISSINQVKTARVHLAIPERSVFVRDRRETTASVFAELYAVLNL 228

Query: 186 KSAEAIRHLVAAAVPNLD------MGDVTVLD 211
               + + ++ + +P L+      +  ++V+D
Sbjct: 229 PMTPSRQFVIWSRLPFLNCALKMFLSWISVVD 260


>gi|289678989|ref|ZP_06499879.1| flagellar MS-ring protein [Pseudomonas syringae pv. syringae FF5]
          Length = 178

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 78/154 (50%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI++ +  N  ++ V S  V +ARI LA  G+  + +N G+E+ DK    G + FM+ 
Sbjct: 85  AANINYTVEPNSGALLVKSDDVQRARIQLAQAGVVQNDANIGFEILDKDQGLGTSQFMEA 144

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
               R LEGE+ARTI +++ +  ARVH+ +P   
Sbjct: 145 TRYRRGLEGELARTISALNNVKGARVHLAIPKSS 178


>gi|257140592|ref|ZP_05588854.1| flagellar MS-ring protein [Burkholderia thailandensis E264]
          Length = 592

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 2/140 (1%)

Query: 42  FVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG 101
           +  +P Y  LY  L   D   I  AL +AN+ ++ +D G +I VP++ V + R+ LAA G
Sbjct: 78  WSRAPDYRVLYSNLSDRDGGAIIAALQQANVPYKFADAGGAILVPANQVHETRLKLAAMG 137

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP   S  G+EL D    FG++ F +++   RALEGE+ RT++S++ + AARVH+ +P  
Sbjct: 138 LPKGGS-VGFELMDN-QKFGISQFAEQVNYQRALEGELQRTVESVNAVRAARVHLAIPKP 195

Query: 162 GSFRKIGARPTASVMIRAIN 181
             F +    P+ASV++  + 
Sbjct: 196 SVFVRDREAPSASVLVDLVP 215


>gi|254853083|ref|ZP_05242431.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503]
 gi|258606431|gb|EEW19039.1| flagellar MS-ring protein [Listeria monocytogenes FSL R2-503]
          Length = 425

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 142/366 (38%), Gaps = 19/366 (5%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ +  +G+ I V   +    R   A  
Sbjct: 33  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADL 91

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 92  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 147

Query: 157 VMPDMGSFRKIGAR---PTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDST 213
            +P+  S  +  ++      ++  +       +    I+  V+AAVPN+   DV ++D+ 
Sbjct: 148 TLPESSSIFEEASQKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTK 207

Query: 214 GKLLTANE----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD 269
             +++  +       +     + I  AI   ++ +I   L++   +DNFR      +N D
Sbjct: 208 NGVISEADTSKEEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFD 267

Query: 270 TQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLEN 328
             +     + P+    RS +       S+ S   +      N        +     +   
Sbjct: 268 EIKQNTE-HYPNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYT 326

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           ++K  E +NYE+++           L + ++ V V++  L +     A+  K     A +
Sbjct: 327 SEKSSETTNYELDSTIQEIKKHP-ALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGL 385

Query: 389 NKIVSA 394
              ++ 
Sbjct: 386 TPNMTT 391


>gi|257457887|ref|ZP_05623046.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580]
 gi|257444600|gb|EEV19684.1| flagellar M-ring protein FliF [Treponema vincentii ATCC 35580]
          Length = 567

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 103/598 (17%), Positives = 212/598 (35%), Gaps = 76/598 (12%)

Query: 1   MA--ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVS 58
           M       L Q           +  ILA+VI+  I++ +    +   P    L     V+
Sbjct: 1   MNEWFKKTLTQIKTLWGKWTPIQKGILAAVIVAAIVIIVLLASWSAKPSLVPLI-DTPVT 59

Query: 59  DVN---RISVALSEANIDFRISDNGSSISVPSSMVGK-ARIHLAAQGLPSSSSNSGYELF 114
           D     RI + L+E N+   +S +G  ISV      +  R  L  + L   +++  + LF
Sbjct: 60  DATVRERIVLRLNEENVKATVSQSG-IISVNDEQTARRMRAILLREDLIPQNTDP-WALF 117

Query: 115 DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
           D V  +  T F + I   RA+  E+ + I+++  +  A V + +P+   F+      TAS
Sbjct: 118 D-VERWTRTDFERNIDVRRAVIEEVRKHIKALDDVDDASVVVNLPEDKLFQADQNPVTAS 176

Query: 175 VMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE-----MERN 225
           V++     S   +     E I+ L+  AV  L   ++T+ D++G +L            +
Sbjct: 177 VILYPKPGSDISTNRKKIEGIQKLLKYAVEGLTDDNITIADNSGNILNDFAGLKDFDRLS 236

Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVY------- 278
           I+ K   I+  ++ + E+ I   L    G D  R  +  +++MD  +             
Sbjct: 237 IIEKQQKIIAKLETQYEIKILNILQKTYGTDRVR-DLSIKIDMDMSEKTAETVEYLPFQL 295

Query: 279 ---DPDSKV---------ERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
              +P++            RS   +    +     PE    VE      +          
Sbjct: 296 RADNPETPYDESEVRASVTRSSETATTTYQGTGFNPEGPTGVEG---QTAPSYKDTSNLT 352

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG-----------RS 375
             + +   ++N EI ++  +      ++ R +++V ++     +                
Sbjct: 353 GLSTQSIVKTNEEIGSRRTSEIVSP-EMGRRTVSVNIDGQWRKKKDANGNLVIKDGQIER 411

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                 D  L +  + V AA G ++ R D++++ ++ F    L        ++   + R 
Sbjct: 412 EYIPIPDDELQKATQAVQAAIGYSALRNDSVSVLNIQFDR--LAEFEKEDNAYFRSVQRQ 469

Query: 436 FATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMP 495
              ++   +  +  LL+ F+    +                +           +      
Sbjct: 470 --RILLISLAGLALLLLIFIVYRIV--------------SREIERRKRLREEELLRQHQL 513

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
               AL  + Q     S +++        ++    +++    + E  A +LR W   E
Sbjct: 514 EREKALWEAEQAGMEVSMSVEEM----KRRELLENVINNAREHPEDVALLLRTWLMEE 567


>gi|289811515|ref|ZP_06542144.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 158

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 2/147 (1%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
            +    L     + L       + + +A   +  +P Y  L+  L   D   I   L++ 
Sbjct: 14  LEWLNRLRANPRIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQM 73

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
           NI +R ++   +I VP+  V + R+ LA QGLP   +  G+EL D+   FG++ F +++ 
Sbjct: 74  NIPYRFANGSGAIEVPADKVHELRLRLAQQGLPKGGA-VGFELLDQE-KFGISQFSEQVN 131

Query: 131 RVRALEGEIARTIQSISGIVAARVHIV 157
             RALEGE+ARTI+++  + +ARVH+ 
Sbjct: 132 YQRALEGELARTIETLGPVKSARVHLA 158


>gi|1184298|gb|AAA87352.1| flagellar MS-ring protein [Borrelia burgdorferi]
          Length = 475

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/498 (15%), Positives = 160/498 (32%), Gaps = 69/498 (13%)

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
           R  L  + L     +  + LFD ++ + +T F + I   R++   + + I ++  + A  
Sbjct: 2   RAILVREELVPVHMDP-WALFD-IDRWTITDFERSINLRRSITRAVEQHIVALDDVDAVS 59

Query: 154 VHIVMPDMGSFRKIGARPTASVMIRAINPS-----VYKSAEAIRHLVAAAVPNL--DMGD 206
           V++VMP+   F++      ASV I             K  E +  L+   + +   +  +
Sbjct: 60  VNLVMPEKALFKESQEPVKASVRITPRPLVLIFITNRKKVEGLVKLIQP-ICHEGFESDN 118

Query: 207 VTVLDSTGKLLTANE-----MERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFR-S 260
           + ++D++G +L            ++  K   +    +  +   I+ AL+  L VD F  +
Sbjct: 119 IAIVDNSGTILNDFSNLDGIDRIDLAEKERKLKLKYEAMLRGEIDSALSKVLSVDRFMIA 178

Query: 261 AVVAELNMDTQQIREIVYDP-----------------DSKVERSIRLSKDAQRSETSQPE 303
            V  +L+   +      Y P                       S +  K   + +   P 
Sbjct: 179 RVNVKLDTSKETTESKEYAPIELQSQDPKASYNTRKVSDSTIISSQTQKKEYQGQGYSPW 238

Query: 304 SAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVV 363
                E N P                ++ +E  N  +N K   +  +  ++  +S+ + V
Sbjct: 239 GPPGQEGNTPPEYQDLSD---ITGKYNESQEIKNVALNEKKSTSEKEPARIVGVSLGIFV 295

Query: 364 NKGR--LTEVLGR---------SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
           +     + +  G             +      +  I  ++ ++      RGD+IT+ ++ 
Sbjct: 296 DGIWNFVYDEKGDFVIENGMRKREYKPMALEEIKNIEDVLQSSFEYKPERGDSITVRNIS 355

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F     F             S  F   +     +   L++ F    A+ R        + 
Sbjct: 356 FDRMNEFREIDENY----FASERFKYFLFIASIVFSLLILVFTIFFAISRELERRRRLRE 411

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
           E   K        +       +  D++       D    +  L                 
Sbjct: 412 EELAKQAHLRRQQALMDGGDDIGVDDVVGGIREGDELQSNAEL----------------- 454

Query: 533 HMIEINEERFAKILRKWA 550
            +     E  AK++R W 
Sbjct: 455 -LAREKPEDVAKLIRTWL 471


>gi|218508689|ref|ZP_03506567.1| flagellar MS-ring protein [Rhizobium etli Brasil 5]
          Length = 332

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 145/360 (40%), Positives = 207/360 (57%), Gaps = 37/360 (10%)

Query: 205 GDVTVLDSTGKLLTANEMERNIL-GKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVV 263
            DVT+LDS G+LL + +   N    +SL+IVQ +Q E+E NI+KALA FLG+DNFRS+V 
Sbjct: 1   DDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQEVESNIDKALAPFLGMDNFRSSVT 60

Query: 264 AELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVP-- 321
           A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P  +       
Sbjct: 61  ADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIPQAAPDAGGAS 120

Query: 322 LPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKI 381
            P S + +DK+EEQ +Y+IN+++ ATT ++YK+E+LSIAVVVN                 
Sbjct: 121 GPESQDKSDKREEQIHYDINSRTTATTRNSYKVEKLSIAVVVN----------------- 163

Query: 382 DSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVIN 441
                      ++A GI+++RGD +T+T+MDFLENQL    T  V  MD+LSR+ A +IN
Sbjct: 164 -----------TSAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIIN 212

Query: 442 ALVFLVGTLLVTFLGLHALRRLHNIDDA------KKGEVGGKSILSPPPISSAVTTGLMP 495
           +L F+    +V ++GL  L R  + + A         E  G  +    P   A    LM 
Sbjct: 213 SLAFVAVAFVVVWMGLRPLVRSVSGNGASAVLGDATPEAAGLELPDFAPAVGAPGGALMD 272

Query: 496 NDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                    + +      +     N  V +  + +L  M+EINEER AKILRKWA  +  
Sbjct: 273 GFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKILRKWAIDDAA 332


>gi|218460680|ref|ZP_03500771.1| flagellar MS-ring protein [Rhizobium etli Kim 5]
          Length = 310

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 136/310 (43%), Positives = 196/310 (63%), Gaps = 8/310 (2%)

Query: 254 GVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
           G+DNFRS+V A+LN D QQI+E  YDP+SKVERS+R +K+AQ+S+  Q ++A TVEQN+P
Sbjct: 1   GMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDNATTVEQNIP 60

Query: 314 HVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEV 371
             +          S + +DK+EEQ+NYEIN+K+ ATT ++Y++E+LSIAVVVNKGR+ ++
Sbjct: 61  QAAPDAGGAGGPESQDKSDKREEQTNYEINSKTTATTRNSYQVEKLSIAVVVNKGRIAKM 120

Query: 372 LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDI 431
           +G  ADQ K+D+Y+AE+ KIV++A GI+++RGD +T+T+MDFLENQL    T  V  MD+
Sbjct: 121 VGEPADQAKVDAYIAEMQKIVASAAGIDAKRGDVVTVTAMDFLENQLLEDATGGVRVMDM 180

Query: 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG------EVGGKSILSPPPI 485
           LSR+ A +IN+L F+    +V ++GL  L R  + + A         E  G  +    P 
Sbjct: 181 LSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGAGAALGDSSPESAGLELPDFAPA 240

Query: 486 SSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKI 545
           + A    LM          + +      +     N  V +  + +L  M+EINEER AKI
Sbjct: 241 AGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLARMVEINEERAAKI 300

Query: 546 LRKWARSEIE 555
           LRKWA  E  
Sbjct: 301 LRKWAIDEAA 310


>gi|330982829|gb|EGH80932.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 317

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 105/333 (31%), Gaps = 52/333 (15%)

Query: 258 FRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSD 317
           +++ V A ++    +     ++PD    RS +   + QRS +S          N P    
Sbjct: 1   YKAEVSAVVDFSAVESTAESFNPDQPALRSEQSV-NEQRSSSSSSGGVPGALSNQPPGPA 59

Query: 318 RKVPLPRSL-----------------------------------ENTDKKEEQSNYEINT 342
                  +                                        + +   N+E++ 
Sbjct: 60  TAPQTAGAGAAGAAGPIAPGQPLLDANGQQIMDPATGQPALAPYPADKRVQSTKNFELDR 119

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEV-LGRSADQGKIDSYLAEINKIVSAATGINSR 401
               T     +L RLS+AVVV+    T    G  +      + LA   ++V  A G ++ 
Sbjct: 120 SISHTKQQQGRLTRLSVAVVVDDMVKTNAANGEVSRAPWSAADLARFTRLVQDAVGFDAS 179

Query: 402 RGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALR 461
           RGD++++ ++ F   +                  F  ++   V ++  L++ F  L  + 
Sbjct: 180 RGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIFILILVFGVLRPVL 235

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
                   K+    G               G + ND ++L      +            +
Sbjct: 236 NNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSILLPSP--------T 284

Query: 522 YVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                    +  ++  +  R A+++++W  ++ 
Sbjct: 285 EGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 317


>gi|226313070|ref|YP_002772964.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599]
 gi|226096018|dbj|BAH44460.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC
           100599]
          Length = 220

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 7/213 (3%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVK-LEVSDVNRISVAL 67
           +F        + +  ++  + L  ++      +  + P Y  LY + L   ++  I   L
Sbjct: 11  RFTSKWNQFSKKQKWMILGISLFLLISLGLYIYIASQPVYKPLYNQKLSEQEIGTIKQEL 70

Query: 68  SEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQ 127
             + I ++I+ NG+SI VP  M     + LAAQG+PS +  +  E+F   ++ G+T    
Sbjct: 71  EASQIPYQITGNGTSIEVPEKMAQDVIVDLAAQGIPSQAGINA-EIF--SSTLGVTDRQF 127

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI---RAINPSV 184
           ++ +  AL+ E+ + ++ + G+ +A+V I +P    +         + +I          
Sbjct: 128 DVMKKEALQQELRKMLERVKGVRSAQVMITLPQESVWVTETPDTATASVIVDVEPGTTLD 187

Query: 185 YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLL 217
            K   ++  LV+ +VP L M  + + D     L
Sbjct: 188 QKQINSLYLLVSRSVPKLPMEAIAITDQYSNPL 220


>gi|331009141|gb|EGH89197.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 444

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|226327718|ref|ZP_03803236.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198]
 gi|225203422|gb|EEG85776.1| hypothetical protein PROPEN_01591 [Proteus penneri ATCC 35198]
          Length = 158

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 2   AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVN 61
            +++Q   F      +     + L       I +F+AA  ++ SP Y  LY  L   D  
Sbjct: 7   DVVNQKKGFNAIINRIKADPKIPLIIAGSAAIAIFVAAFLWLQSPDYKVLYSNLSDKDGG 66

Query: 62  RISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFG 121
            I   L++ N+ +R+S NGS+I VP + V + R+ LA  GLP   + +G+EL DK   FG
Sbjct: 67  EIVTQLTQMNVPYRLSQNGSAIMVPDNQVHELRLKLAQAGLPKGGA-AGFELLDKE-KFG 124

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIV 150
           ++ F ++I   RALEGE+ARTI+++  + 
Sbjct: 125 ISQFSEQINYQRALEGELARTIETLGPVQ 153


>gi|119503664|ref|ZP_01625747.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
 gi|119460726|gb|EAW41818.1| flagellar M-ring protein [marine gamma proteobacterium HTCC2080]
          Length = 300

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 106/318 (33%), Gaps = 24/318 (7%)

Query: 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETS 300
           +   I   L   LGV   R+ V A+L+    +     Y P++ +           +S   
Sbjct: 1   MNDRIESILEPILGVGAARAQVTADLDFTRVESTSEQYSPETIMRSEQTTEDLTLKS--I 58

Query: 301 QPESAVTVEQNMPHVSDRKVPLPRS-----LENTDKKEEQSNYEINTKSIATTHDNYKLE 355
             E A       P  +        +         + ++   N+E++           KL 
Sbjct: 59  AAEGAPGQLTEQPPGAADPDDAENAVAQAPSPTRESRKATRNFEMDKTISHVREVPGKLR 118

Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415
           RLSIAVV++     +    + +QG+    L EI  +V  A G +  RGDT+++ +  F+ 
Sbjct: 119 RLSIAVVIDYVTDEDGNRTALEQGR----LDEITALVREAVGFDDARGDTVSVINSPFVV 174

Query: 416 NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVG 475
            +                        AL+ L+  +         +R L     +      
Sbjct: 175 PEALEEIPEPGLLEQDWIWQAGKGALALIALLMLIFT------VIRPLIRYSTSYTPPPP 228

Query: 476 GKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMI 535
             S   P   S     G + +D +AL    Q     +        +    QS     +++
Sbjct: 229 PPSDGLPQLASPMGADGGINDDTVALSGPAQAALPGT-------TTPAYHQSIAMARNVV 281

Query: 536 EINEERFAKILRKWARSE 553
                R A +++ W  ++
Sbjct: 282 NEQPARAAYVVKNWMATD 299


>gi|23011692|ref|ZP_00051978.1| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 285

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 122/295 (41%), Gaps = 15/295 (5%)

Query: 261 AVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
            V AEL+++  + R   +DP+S+V RS +   +   +  ++ + +V    N    +++  
Sbjct: 2   QVAAELDLNRVESRSESFDPESRVVRSTQTRSENSLTGGAEGQVSVG---NELPGANQNQ 58

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
             P+  +++ K EE +NYEI+  +   T +  +L RLS+AV+V+        G+   Q +
Sbjct: 59  AQPQQKDSSQKNEETTNYEISRVTKVETLEGGRLRRLSVAVLVDGVYAPGADGKPVYQPR 118

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLE---NQLFNSGTVQVSFMDILSRHFA 437
            D+ +  I  +V  A G +  RGD + + ++ F E      F    +  S +        
Sbjct: 119 PDAEIERIAALVRTAVGYDKGRGDQVEVVNLRFAESPAAPDFAEPGLIQSLLSPTKEDVM 178

Query: 438 TVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
            ++   V  + T++V    +  L R     D      G    L+      A  T  +   
Sbjct: 179 RLVELAVLSLLTVIVLMAVVRPLLRRVLESDEPAALAGPAGALALAGAPGAPGTVEVVVR 238

Query: 498 NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
             A         +      +++N  +  ++  R++ M+  +     ++LR W   
Sbjct: 239 ENA---------TKKFLDSAKLNGEIQAETVERVVDMVRASPSETVEVLRNWIHD 284


>gi|170738287|ref|YP_001779547.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia MC0-3]
 gi|169820475|gb|ACA95057.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia MC0-3]
          Length = 287

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 7/207 (3%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI 76
           +     ++  + +   ++L +A    +     + LY  L   D N I  AL +A ID + 
Sbjct: 1   MNARIRIVGRASVHACVVLCVALCIALAGCKQE-LYGNLSEQDCNEIVAALLQAGIDAKK 59

Query: 77  S--DNGSSIS--VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
              D G + S  V  + + +A   L   GLP+   +   +LF K +    T   + +  +
Sbjct: 60  ESADGGKTWSAKVDDAHIVQAMNVLREHGLPAHKYDDLGDLF-KKDGLVSTPTEERVRFI 118

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAI 191
             +  E+++T+  I G++ ARVHIV+PD           +ASV I+ +  +        I
Sbjct: 119 YGVSQELSKTLSQIDGVMVARVHIVLPDNDPLAMHVKPSSASVFIKYLPTANLAMIEPQI 178

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLT 218
           ++LV  +V  L    V++    G  L 
Sbjct: 179 KNLVVHSVEGLSYDKVSLTAVAGSPLD 205


>gi|315301967|ref|ZP_07872962.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
 gi|313629662|gb|EFR97800.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
          Length = 380

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 134/397 (33%), Gaps = 32/397 (8%)

Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGK 229
           ++  +       +    I+  V+AAVPN+   DV ++D+   +++  +       +    
Sbjct: 1   TLKTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTSKEEGSSAYKN 60

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            + I  AI   ++ +I   L++   +DNFR      +N D  +       P+    RS +
Sbjct: 61  EVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQ 119

Query: 290 LSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                  S+ S   +      N        +     +   ++K  E +NYE+++      
Sbjct: 120 KDTSTDTSKGSTNTTESGTAANADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIK 179

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-------- 400
                L + ++ V V++  L       A+  K     A +   ++   G           
Sbjct: 180 KHP-ALAKTNVVVWVDQQALNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEG 238

Query: 401 --RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
             + GD +TI  + FL+NQ         +           +            + F  + 
Sbjct: 239 TFQNGD-VTIMPIQFLDNQTPVEKDAGKTPEPASKAWIWWLAGG---------LLFAIIA 288

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A    + I   +K ++             A    +MP D+   +            L++R
Sbjct: 289 AGIIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVMPEDHPDFNFQTDAFHLSEPELKAR 348

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 +    +L  M + +  R A +++KW     E
Sbjct: 349 -----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380


>gi|313639030|gb|EFS04021.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171]
          Length = 380

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 134/397 (33%), Gaps = 32/397 (8%)

Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGK 229
           ++  +       +    I+  V+AAVPN+   DV ++D+   +++  +       +    
Sbjct: 1   TLKTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKN 60

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            + I  AI   ++ +I   L++   +DNFR      +N D  +       P+    RS +
Sbjct: 61  EVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQ 119

Query: 290 LSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                  S+ S   +      N        +     +   ++K  E +NYE+++      
Sbjct: 120 KDTSTDTSKGSTNTTESGTASNADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIK 179

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-------- 400
                L + ++ V V++  L       A+  K     A +   ++   G           
Sbjct: 180 KHP-ALAKTNVVVWVDQQALNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEG 238

Query: 401 --RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
             + GD +TI  + FL+NQ         +           +            + F  + 
Sbjct: 239 TFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGG---------LLFAIIA 288

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A    + I   +K ++             A    ++P D+   +            L++R
Sbjct: 289 AGIIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVVPEDHPDFNFQTDAFHLSEPELKAR 348

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 +    +L  M + +  R A +++KW     E
Sbjct: 349 -----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380


>gi|313634347|gb|EFS00945.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067]
          Length = 380

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 134/397 (33%), Gaps = 32/397 (8%)

Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE----MERNILGK 229
           ++  +       +    I+  V+AAVPN+   DV ++D+   +++  +       +    
Sbjct: 1   TLKTKNNQTLTSEQVLGIQRTVSAAVPNVASEDVAIIDTKNGVISEADTTKEEGSSAYKN 60

Query: 230 SLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIR 289
            + I  AI   ++ +I   L++   +DNFR      +N D  +       P+    RS +
Sbjct: 61  EVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTSVTVNFDEIKQNTER-YPNDGKVRSNQ 119

Query: 290 LSKDAQRSETSQPESAVTVEQNMP-HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATT 348
                  S+ S   +      N        +     +   ++K  E +NYE+++      
Sbjct: 120 KDTSTDTSKGSTNTTESGTAANADVPNYTEENGGDTNTYTSEKSSETTNYELDSTIQEIK 179

Query: 349 HDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS-------- 400
                L + ++ V V++  L       A+  K     A +   ++   G           
Sbjct: 180 KHP-ALAKTNVVVWVDQQSLNNNGVDMAEFTKAVGVSAGLTPNMATPEGAEEGATPTFEG 238

Query: 401 --RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
             + GD +TI  + FL+NQ         +           +            + F  + 
Sbjct: 239 TFQNGD-VTIMPIQFLDNQAPVEKDTGKTPESASKAWIWWLAGG---------LLFAIIA 288

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
           A    + I   +K ++             A    ++P D+   +            L++R
Sbjct: 289 AGIIGYIIFLKRKEQLEEALEPEEVDYIPAEEAIVVPEDHPDFNFQTDAFHLSEPELKAR 348

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 +    +L  M + +  R A +++KW     E
Sbjct: 349 -----KESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 380


>gi|82795289|gb|ABB91658.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tagetis]
          Length = 268

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 22  ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDN 79
             + A ++L+ I++              +L+  L   D N +   L++ +ID R  +   
Sbjct: 2   KFLSAGLLLMCILMLGGCS------DDTDLFTGLSEQDSNEVVARLADQHIDARKRLEKT 55

Query: 80  GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
           G  ++V +S + +A   L A GLP  S  S  E+F K      T   +    + AL  E+
Sbjct: 56  GVVVTVATSDMNRAVRVLDAAGLPRHSRTSLGEIFKKEGVI-STPLEERARYIYALSQEL 114

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAA 198
             T+  I G++ ARVH+V+P+  +  +     +A+V I+        S    I+ +VA++
Sbjct: 115 EATLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSASLDPDSVRGRIQQMVASS 174

Query: 199 VPNLDMGD 206
           +P +    
Sbjct: 175 IPGMSTQS 182


>gi|291484172|dbj|BAI85247.1| hypothetical protein BSNT_02643 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 196

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
           M + ++  +F+K+ + L   + +++ S +   I++ +    F ++     LY  L   + 
Sbjct: 1   MQMKNKTSEFWKNRSKL---QKILMVSALAAIIIIGIIISVFASNSKMAPLYKDLSAEEA 57

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            +I   L    +   +S+ G+ ISVP   V   ++ +AA+GLP + S   Y  F +   F
Sbjct: 58  GQIKKELDAKKVPNELSNGGTVISVPEDQVDSLKVQMAAEGLPKTGS-IDYSFFGQNAGF 116

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM 158
           GLT    ++ +V+A + E++  I  + GI  ++V I +
Sbjct: 117 GLTDNEFDMVKVKATQTELSNLINEMDGIKNSKVMITL 154


>gi|307944360|ref|ZP_07659701.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
 gi|307772706|gb|EFO31926.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
          Length = 259

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 4/186 (2%)

Query: 28  VILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSISV 85
              V     + A  F+ +     LY  L   + N+I+  L +A I        +G SI V
Sbjct: 4   ASAVLRSAILLACLFILAGCKVELYSNLSEQEANQIAATLIDAGISVDKEKLRDGVSILV 63

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
             S    A   L   GLP+    +  E+F K +    +   ++   V AL  E+  TI  
Sbjct: 64  ADSEFANAVNLLNENGLPARRYQNMGEIFQK-SGIVSSPTEEKARFVFALSQELENTIAE 122

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           I G+++ARVH+V+P+     +     +AS+ +R +     +     I+ LV+ ++  L  
Sbjct: 123 IDGVLSARVHVVLPEEDILGRQTEPSSASLFVRHVEGVPVEKLIPRIKMLVSNSIEGLVY 182

Query: 205 GDVTVL 210
             V+V+
Sbjct: 183 ERVSVV 188


>gi|289678028|ref|ZP_06498918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           FF5]
 gi|330895842|gb|EGH28130.1| type III secretion protein HrcJ [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 268

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91
           +L +            +L+  L   D N +   L++ +ID R  +   G  ++V +S + 
Sbjct: 8   LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 68  RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +    
Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182


>gi|330975852|gb|EGH75918.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 268

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91
           +L +            +L+  L   D N +   L++ +ID R  +   G  ++V +S + 
Sbjct: 8   LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 68  RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +    
Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182


>gi|330969118|gb|EGH69184.1| type III secretion protein HrcJ [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 268

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91
           +L +            +L+  L   D N +   L++ +ID R  +   G  ++V +S + 
Sbjct: 8   LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 68  RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
           ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|329889303|ref|ZP_08267646.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568]
 gi|328844604|gb|EGF94168.1| hypothetical protein BDIM_09830 [Brevundimonas diminuta ATCC 11568]
          Length = 240

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 4/168 (2%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG--SSISVPSSMVGKARIHLAAQGLP 103
                LY  L   D N +   L    +D   + +G    +        +A   L  +G P
Sbjct: 19  CGQQELYGGLTERDANEMVAVLKAQGLDASKTRDGDNWVLKADRGDFSRAVALLHDRGYP 78

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
             +  S  E+F K   F  +   Q +  + AL+ E+ +TI SI G+V ARVHI +P+   
Sbjct: 79  RQNFASMGEVFQKE-GFVSSPMEQRMRMMYALQQELGQTISSIDGVVQARVHIAVPESDP 137

Query: 164 FRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
             +     +ASV I+            +I+ LV  ++  L    VTV+
Sbjct: 138 LAQEKPPSSASVFIKHRPDYDISAQTGSIKALVVNSIEGLPYDKVTVV 185


>gi|66044446|ref|YP_234287.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255153|gb|AAY36249.1| type III secretion protein HrcJ [Pseudomonas syringae pv. syringae
           B728a]
          Length = 268

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91
           +L +            +L+  L   D N +   L++ +ID R  +   G  ++V +S + 
Sbjct: 8   LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 68  RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +    
Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182


>gi|330950834|gb|EGH51094.1| type III secretion protein HrcJ [Pseudomonas syringae Cit 7]
          Length = 268

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91
           +L +            +L+  L   D N +   L++ +ID R  +   G  ++V +S + 
Sbjct: 8   LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 68  RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
           ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|818896|gb|AAB05080.1| HrcJ [Pseudomonas syringae pv. syringae]
          Length = 268

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91
           +L +            +L+  L   D N +   L++ +ID R  +   G  ++V +S + 
Sbjct: 8   LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 68  RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
           ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +   
Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|330937050|gb|EGH41134.1| type III secretion protein HrcJ [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 229

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVG 91
           +L +            +L+  L   D N +   L++ +ID R  +   G  ++V +S + 
Sbjct: 8   LLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMN 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  S  S  ++F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 68  RAVRVLNAAGLPRQSRASLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIV 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           ARVH+V+P+  +  +     +A+V I+        S    I+ +VA+++P +    
Sbjct: 127 ARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182


>gi|227820519|ref|YP_002824490.1| type III secretion component, RhcJ protein [Sinorhizobium fredii
           NGR234]
 gi|227339518|gb|ACP23737.1| type III secretion component, RhcJ protein [Sinorhizobium fredii
           NGR234]
          Length = 267

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 5/181 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVPSSMV 90
            L++A           +LY  L+  + N +   L    I     +  +G  +++V  +  
Sbjct: 13  GLWLALIVVTLQACSVDLYTNLDEREANEMVATLLSKGIAAGRVVQKDGKLTVTVDENEF 72

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   L   GLP     +   +F +      +   +    + AL  E++RT+  I G++
Sbjct: 73  SEAVTALNMAGLPKQKFATLGSVF-QQEGLVASPVQERAQMIYALSEELSRTVSEIDGVL 131

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
           +ARVH+V+PD    ++     +ASV IR             I+ LVA ++  L    V+V
Sbjct: 132 SARVHVVLPDNDPLQRNAIPASASVFIRHEAGLDVNPLIPRIKTLVANSISGLTYEKVSV 191

Query: 210 L 210
           +
Sbjct: 192 V 192


>gi|330975997|gb|EGH76063.1| flagellar MS-ring protein [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 153

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            ANI++ +  N  ++ V S  V +ARI LA  G   + +N G+E+ DK    G + FM+ 
Sbjct: 85  AANINYTVEPNSGALLVKSDDVQRARIQLAQAGGVQNDANIGFEILDKDQGLGTSQFMEA 144

Query: 129 ITRVRALEG 137
               R LEG
Sbjct: 145 TRYRRGLEG 153


>gi|254253717|ref|ZP_04947034.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa
           AUO158]
 gi|124898362|gb|EAY70205.1| Type III secretory pathway lipoprotein EscJ [Burkholderia dolosa
           AUO158]
          Length = 263

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSS 88
           ++   A    + +   + LY +L  SD N +  AL  + +D + S  +G    S+ V   
Sbjct: 16  LVAVAALVLSLAACKQE-LYGQLTESDCNEMVAALLMSGVDAQKSTPDGGKTWSVGVDEK 74

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            +  A   L A+GLP    +    LF K +    T   + +  +  L  E+  T+  I G
Sbjct: 75  QIVHAVEVLRARGLPRKKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKIDG 133

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDV 207
           +V ARV IV+P+     +     +ASV I+    +  +    AI++LV  ++  L    V
Sbjct: 134 VVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQV 193

Query: 208 TVL 210
           +V 
Sbjct: 194 SVT 196


>gi|312602780|ref|YP_004022625.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
 gi|306431583|emb|CBK52135.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
 gi|312170094|emb|CBW77106.1| type III secretion cytoplasmic membrane protein SctJ [Burkholderia
           rhizoxinica HKI 454]
          Length = 265

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 9/196 (4%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-- 77
            +  I+  +  + + L +    +        LY  L   DVN + VAL E  +D   S  
Sbjct: 4   GQRTIVIRISRIVLALLVCLSLWGCHKE---LYNNLSEQDVNEMMVALLERGVDASKSTP 60

Query: 78  --DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
                 S+SV  + + +A   L A+GLP +  +    LF K +    T   + +  +  L
Sbjct: 61  DNGKTWSLSVEEAEIVRAMEVLRARGLPHAKYDDLGSLF-KRDGLVSTPTEERVRFIYGL 119

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHL 194
             E++ T+  I G+V ARV IV+P+           +ASV I+    S   +    I+ L
Sbjct: 120 SQELSNTLSKIDGVVVARVQIVLPNNDPLALQAKPSSASVFIKYRPDSDVAALVPQIKTL 179

Query: 195 VAAAVPNLDMGDVTVL 210
           V  +V  L    V+V 
Sbjct: 180 VVHSVEGLTYEAVSVT 195


>gi|171316789|ref|ZP_02906000.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
 gi|171098047|gb|EDT42863.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
          Length = 241

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS----SISVPSSMVGKARIHLAAQGLPS 104
            +LY  L   D N +  AL E  ID      G+     +SVP      A   L  +GLP 
Sbjct: 15  TSLYENLTEQDANEMIAALFENGIDASKQRGGNGKFWMVSVPEGEFAGAINVLRDRGLPQ 74

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
              +    LF K + F  T   + +  +  L  E++ TI +I G++ ARV IV+P+    
Sbjct: 75  EKRDDLGNLF-KKDGFVSTPTEERVRFLYGLSQELSSTISAIDGVMVARVQIVLPNNDPL 133

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+    S        I+ LV  +V  L    V+V 
Sbjct: 134 AEQVKPSSASVFIKYNADSSVGQIVPQIKTLVVNSVEGLAYERVSVT 180


>gi|325109012|ref|YP_004270080.1| secretory protein YscJ/FliF family protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324969280|gb|ADY60058.1| secretory protein YscJ/FliF family protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 540

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/572 (15%), Positives = 173/572 (30%), Gaps = 54/572 (9%)

Query: 1   MAILDQ-LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNS-PHYDNLYVKLE-- 56
           M I  Q   QF +   ++  ++  +LA+V ++ +  F    +       Y  + V     
Sbjct: 1   MDIFKQTFTQFRELFLAMPASQRAMLATVTVLLLGGFGYLMYRGTGNGGYVPVSVGKSFR 60

Query: 57  VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG-LPSSSSNSGYELFD 115
           V ++ R    L +          G  + VPSS V +    L A G LP + +    + + 
Sbjct: 61  VEELIRAEETLLQNGYT-DFERRGQRLLVPSSKVEEYNAALLAAGSLPQNWAEEWEKQYS 119

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175
            +  F     M +  +  A     ++ + ++  I  A V     +   + K         
Sbjct: 120 DIGPFANNKQM-DERKEIARAKLASQMLLALPDIEYANVVWDQEEKARWPKQPRSTATVS 178

Query: 176 MI-RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-STGKLLTANEMERNILGKSLSI 233
           +  RA          A+R  +A    NL   DVTVLD   G      +       + L  
Sbjct: 179 VQPRANKQLDETLVHAVRVSIAGMKANLSAEDVTVLDLGRGIAYQQADDNDPFNDRLLQR 238

Query: 234 VQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKD 293
           +Q ++      +  A+      D+ R AV  +++     IR       +           
Sbjct: 239 IQQLKDMYRDEVLTAIDYI---DSVRVAVKVDIDKVKSAIRRSQSVETTGTTLVSINESS 295

Query: 294 AQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
              S   Q         N P     +    +S ++T+ KE       + +          
Sbjct: 296 KHNSNRFQTAKEPGQNANGPMNLAGQQTPTQSADSTETKESSLT-APSFQVTQEDVAGAL 354

Query: 354 LERLSIAVVVNKGRLTEVLGRS------ADQGKIDSYLAEINKIVSAATGINSRRGDTIT 407
            E +S++VV+ +     V  +S      A +  I + + ++   V  A      +   I 
Sbjct: 355 PENVSVSVVIPEQYYRTVALQSGQVAPDATEEDIRAAVQKVRPDVDDAVKARVAKIIPIP 414

Query: 408 I-------TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
           +         +        +   V + +   LS       +A+   +  L   ++    +
Sbjct: 415 VGQNVDDYIDVGAFIPSPTSETIVSIPWTQTLSYWITQWGSAVGLGIFALWAFWMLNKTV 474

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
           R                            +           +   +            + 
Sbjct: 475 R----------------------------SQTETEIPEPEPEQVEEAKSEEEEFSDEDLM 506

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
                +    L ++++ N E  A I+  W + 
Sbjct: 507 PQGDTKRVDHLQYLVKKNPEMTASIISNWIQE 538


>gi|115360597|ref|YP_777734.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria AMMD]
 gi|115285925|gb|ABI91400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria AMMD]
          Length = 263

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 9/185 (4%)

Query: 31  VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVP 86
           +     +             LY +L  SD N +  AL  + +D + S  +G    S+SV 
Sbjct: 16  LVAAAVLVLSLAACKQD---LYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVD 72

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
              +  A   L A+G+P    +    LF K +    T   + +  +  L  E+  T+  I
Sbjct: 73  EKQIVHAVEVLRARGIPRKKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKI 131

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205
            G+V ARV IV+P+     +     +ASV I+    +  +    AI++LV  ++  L   
Sbjct: 132 DGVVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYD 191

Query: 206 DVTVL 210
            V+V 
Sbjct: 192 QVSVT 196


>gi|325926453|ref|ZP_08187774.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Xanthomonas perforans 91-118]
 gi|325543152|gb|EGD14594.1| flagellar biosynthesis/type III secretory pathway lipoprotein
           [Xanthomonas perforans 91-118]
          Length = 241

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 8/229 (3%)

Query: 326 LENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYL 385
                 K    NYE++     T     +++R+S+AV+++        G+  +Q    + L
Sbjct: 19  TPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAEL 78

Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
             I  +V  A G ++ RGDT+++ +  F+   +      +      +       +  LV 
Sbjct: 79  TRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQN----GLRLLVG 134

Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSN 505
            V  L + F  +    R      A K + G       P         ++  D+  +    
Sbjct: 135 AVVVLALLFGVVRPTLRQLTGVTAVKDKQGKAGKDGTPQS---ADVRMVDEDDDLMPRLE 191

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553
           +D     ++ ++ I    + +  +RL    ++ + +R A++++ W  SE
Sbjct: 192 EDTAQIGQDKKTPIALPDAYEERMRLAREAVKADSKRVAQVVKGWVASE 240


>gi|28868592|ref|NP_791211.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968275|ref|ZP_03396419.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           T1]
 gi|301383410|ref|ZP_07231828.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061714|ref|ZP_07253255.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           K40]
 gi|302129971|ref|ZP_07255961.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|790910|gb|AAB00129.1| HrpC [Pseudomonas syringae pv. tomato]
 gi|28851830|gb|AAO54906.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926913|gb|EEB60464.1| type III secretion protein HrcJ [Pseudomonas syringae pv. tomato
           T1]
 gi|331015115|gb|EGH95171.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 268

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSRT 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  TLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
              +A+V I+        S    I+ +VA+++P +    V
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183


>gi|330872935|gb|EGH07084.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963064|gb|EGH63324.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 268

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 4/160 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSEMNRAVRVLDAAGLPRRSRT 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  TLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
              +A+V I+        S    I+ +VA+++P +    V
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQSV 183


>gi|330984953|gb|EGH83056.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 269

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSRT 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182


>gi|330819406|ref|YP_004348268.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia gladioli BSR3]
 gi|327371401|gb|AEA62756.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia gladioli BSR3]
          Length = 277

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 15/195 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN 79
           R   +     +  +L               LY  L   DVN + VAL E  +D  + + +
Sbjct: 9   RRASVVGAFALCALLAGC---------KKELYGNLSEQDVNEMVVALLENGVDAAKETPD 59

Query: 80  GS---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
           G    ++ V    + +A   L ++GLP S  ++  +LF K +    T   + +  +  + 
Sbjct: 60  GGKTWTLEVDGDQMVRAMEALRSRGLPKSRFDNLGDLF-KKDGLVSTPTEERVRFIYGMS 118

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLV 195
            E++ T+  I G++ ARV IV+P+     +     +A+V I+    S   +    I+ LV
Sbjct: 119 QELSSTLSKIDGVLVARVQIVLPNNDPLAQTIKPSSAAVFIKYRPNSDVGALVPQIKTLV 178

Query: 196 AAAVPNLDMGDVTVL 210
             +V  L    V+V 
Sbjct: 179 MHSVEGLTYDQVSVT 193


>gi|330957475|gb|EGH57735.1| type III secretion protein HrcJ [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 269

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSRT 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182


>gi|330894451|gb|EGH27112.1| type III secretion protein HrcJ [Pseudomonas syringae pv. mori str.
           301020]
          Length = 269

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATRDMNRAVRVLNAAGLPRQSRT 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSTQS 182


>gi|172064921|ref|YP_001815633.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria MC40-6]
 gi|171997163|gb|ACB68080.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MC40-6]
          Length = 264

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSS 88
           ++        + +   + LY +L  SD N +  AL  + +D + S  +G    S+SV   
Sbjct: 16  LVATAVLVLSLAACKQE-LYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEK 74

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            +  A   L A+G+P    +    LF K +    T   + +  +  L  E+  T+  I G
Sbjct: 75  QIVHAVEVLRARGIPRKKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKIDG 133

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDV 207
           +V ARV IV+P+     +     +ASV I+    +  +    AI++LV  ++  L    V
Sbjct: 134 VVVARVQIVLPNNDPLAQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQV 193

Query: 208 TVL 210
           +V 
Sbjct: 194 SVT 196


>gi|289623695|ref|ZP_06456649.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647631|ref|ZP_06478974.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330871299|gb|EGH06008.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 268

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|42562013|gb|AAS20455.1| HrcJ [Pseudomonas syringae pv. phaseolicola]
          Length = 268

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|9800448|gb|AAF99294.1|AF268940_4 HrcJ [Pseudomonas syringae pv. phaseolicola]
          Length = 268

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|71734078|ref|YP_273534.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|37528863|gb|AAQ92361.1| HrcJ [Pseudomonas syringae]
 gi|71554631|gb|AAZ33842.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322966|gb|EFW79056.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329911|gb|EFW85899.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874585|gb|EGH08734.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 268

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|257487247|ref|ZP_05641288.1| type III secretion component protein HrcJ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|50508099|dbj|BAD30075.1| HrcJ [Pseudomonas syringae pv. tabaci]
 gi|238577776|gb|ACR46687.1| HrcJ [Pseudomonas syringae pv. tabaci]
          Length = 268

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|289670545|ref|ZP_06491620.1| flagellar MS-ring protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 230

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 8/235 (3%)

Query: 320 VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQG 379
                +      K    NYE++     T     +++R+S+AV+++        G+  +Q 
Sbjct: 2   QATAAAAPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQP 61

Query: 380 KIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATV 439
              + L  I  +V  A G ++ RGDT+++ +  F+   +      +      +       
Sbjct: 62  LTAAELTRIEGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGPKWWEDPRVQN----G 117

Query: 440 INALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
           +  LV  V  L + F  +    R      A K +         P         ++ +++ 
Sbjct: 118 LRLLVGAVVVLALLFGVVRPTLRQLTGVTAIKEKQRKGGNDGTPQS---ADVRMVDDEDS 174

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL-LHMIEINEERFAKILRKWARSE 553
            L    +D  S  ++ +  I    + +  +R+    ++ + +R A++++ W  SE
Sbjct: 175 LLPHMGEDTASIGQDRKPAIALPDAYEERMRVAREAVKADSKRVAQVVKGWVASE 229


>gi|298485938|ref|ZP_07004013.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159524|gb|EFI00570.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 268

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|254469855|ref|ZP_05083260.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudovibrio sp. JE062]
 gi|211961690|gb|EEA96885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudovibrio sp. JE062]
          Length = 267

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 83/181 (45%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSM 89
            +  +     + + +  +LY  L   + N +   L E  +  +   + D   ++ V    
Sbjct: 6   FITIVGMVIGLAACN-TDLYTNLSEQEANTMLSLLLENGVSAQKVGLGDGLVTLQVDDDD 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L A GLP  + ++  ++F K +    + F + I  + AL  E++ TI  I GI
Sbjct: 65  IQRAVTILNANGLPKRARDTLGQVFQK-SGIISSPFEERIRFIYALSEEVSETITEIDGI 123

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVT 208
           V+ARVHIV+P+     +     +A++ I+       +     I+ LV+ A+  ++   V+
Sbjct: 124 VSARVHIVLPEKADLGEEVKPSSAAIFIKHRPEFDIEFLIPQIKRLVSNAIEGVEYASVS 183

Query: 209 V 209
           V
Sbjct: 184 V 184


>gi|3603315|gb|AAC35801.1| putative hrp type III secretion pathway protein [Pseudomonas
           syringae pv. glycinea]
          Length = 268

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPRQSRA 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  ++F K      T   +    + AL  E+  T   I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGDIFKKEGVI-STPLEERARYIYALSQELEATWSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|238023713|ref|YP_002907945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia glumae BGR1]
 gi|237878378|gb|ACR30710.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Burkholderia glumae BGR1]
          Length = 280

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 15/201 (7%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
            S    R   +A    +  +L               LY  L   DVN + VAL E  +D 
Sbjct: 3   QSRSGWRRASVAGGFALCALLAGC---------KKELYGNLSEQDVNEMVVALLENGVDA 53

Query: 75  RIS----DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
                      ++ V    + +A   L ++GLP S  ++  +LF K +    T   + + 
Sbjct: 54  SKETPDAGKTWTLEVDGDQMVRAMEALRSRGLPKSRFDNLGDLF-KKDGLVSTPTEERVR 112

Query: 131 RVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AE 189
            +  +  E++ T+  I G++ ARV IV+P+     +     +A+V I+    S   +   
Sbjct: 113 FIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQTIKPSSAAVFIKYRPNSDVGALVP 172

Query: 190 AIRHLVAAAVPNLDMGDVTVL 210
            I+ LV  +V  L    V+V 
Sbjct: 173 QIKTLVMHSVEGLTYDQVSVT 193


>gi|51103010|gb|AAT96157.1| HrcJ [Pseudomonas viridiflava]
 gi|51103065|gb|AAT96211.1| HrcJ [Pseudomonas viridiflava]
          Length = 268

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 4/158 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  +   D N +   L++ +ID R  +   G  ++V +  + +A   L A GLP  S  
Sbjct: 25  LFTGMSEQDSNEVIARLADQHIDARKRLEKGGVVVTVATQDMNRAVRVLDAAGLPRQSRT 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPV 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMG 205
              +A+V I+        S    I+ +VA+++P +   
Sbjct: 144 QPASAAVFIKHSTALDPDSVRGRIQQMVASSIPGMSTQ 181


>gi|170701293|ref|ZP_02892259.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
 gi|170133816|gb|EDT02178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
          Length = 244

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY +L  SD N +  AL  + +D + S  +G    S+SV    +  A   L A+G+P 
Sbjct: 11  QELYGQLSESDCNEMVAALLSSGVDAQKSTPDGGKTWSVSVDEKQIVHAVEVLRARGIPR 70

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
              +    LF K +    T   + +  +  L  E+  T+  I G+V ARV IV+P+    
Sbjct: 71  KKFDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELDDTLSKIDGVVVARVQIVLPNNDPL 129

Query: 165 RKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
            +     +ASV I+    +  +    AI++LV  ++  L    V+V 
Sbjct: 130 AQSVKPSSASVFIKYRPDANLERMTPAIKNLVVHSIEGLTYDQVSVT 176


>gi|171915741|ref|ZP_02931211.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Verrucomicrobium spinosum DSM 4136]
          Length = 248

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 5/182 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89
           I L +     V+      L+  L   + N +  AL E ++    +    +  ++ V S  
Sbjct: 7   ITLCLCGLLLVSCAKQVPLFSDLREEEANEVMAALMERDVACTKTPGKEDKWALQVKSED 66

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L A GLP  S     E+F K +    +   + +  + AL  E++ T   I G+
Sbjct: 67  FPFAMQTLQAMGLPRQSFQRMGEIFQK-SGLVSSPTEERVRFIYALSQELSETFMKIDGV 125

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVT 208
           VAARVHI +PD     +     +A+V I+         + + +++LV  +V  L   +V 
Sbjct: 126 VAARVHIALPDTDPLAEETNPASAAVFIKCRPGYNLANNTQDLKNLVTRSVEGLKPENVE 185

Query: 209 VL 210
           ++
Sbjct: 186 LV 187


>gi|332526232|ref|ZP_08402363.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Rubrivivax benzoatilyticus JA2]
 gi|332110068|gb|EGJ10696.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Rubrivivax benzoatilyticus JA2]
          Length = 239

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY +L+  + N +   L+ A ID    R+     ++ V      +A   L A G P    
Sbjct: 35  LYAQLDEREANEMVALLTHAGIDAAKQRVDGGQFALRVGGGEFARAVQVLHAAGYPREGH 94

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S   +F K   F  T   +    + AL  E+A T+Q+I G+V ARVH+ +P+   F + 
Sbjct: 95  ESLGTMF-KKEGFVTTQLEERARFMHALSQELAGTLQNIDGVVLARVHLAVPEKRRFAEK 153

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
                A+V ++            +I+ LV  A+  L    VTV+
Sbjct: 154 PEPSAAAVFLKVRPGVDLAPQIGSIKALVVNAIEGLPYEQVTVV 197


>gi|237799989|ref|ZP_04588450.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022844|gb|EGI02901.1| type III secretion protein HrcJ [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 269

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L++ +ID R  +   G  ++V +S + +A   L A GLP  S  
Sbjct: 25  LFTGLSEQDSNEVVARLADQHIDARKRMEKTGVVVTVATSDMNRAVRVLDAAGLPRHSRT 84

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 85  SLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERVAPGEPI 143

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
              +A+V I+        S    I+ +VA+++P +    
Sbjct: 144 QPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMSAQS 182


>gi|167615471|ref|ZP_02384106.1| lipoprotein transmembrane protein [Burkholderia thailandensis Bt4]
          Length = 252

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 39  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 99  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204


>gi|312597814|gb|ADQ89929.1| RscJ [Pseudomonas fluorescens]
          Length = 293

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+  L   D N +   L+  N++   ++  +G ++ V  + +  A   L A GLP 
Sbjct: 18  ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 77

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            S +S  E+F K      T   +    + AL  E+  T+  I G+V ARVH+V+P+  + 
Sbjct: 78  RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 136

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DMGDVTVL 210
            +     +ASV I+  N     S    +R+LVA+ +P +     +   ++V+
Sbjct: 137 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGMADATQNPTKLSVV 188


>gi|167577322|ref|ZP_02370196.1| lipoprotein transmembrane protein [Burkholderia thailandensis
           TXDOH]
          Length = 260

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 39  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 99  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204


>gi|229588272|ref|YP_002870391.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360138|emb|CAY46995.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 271

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 9/172 (5%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+ +L   + N +   L++ +I  R   + +G ++SV ++ +G+A   L A GLP 
Sbjct: 29  DRVELHRQLSEQEANEVIAELADKHIRARKIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  + F K      T   +    + AL  E+  T+ +I G++ ARVH+V+P+  + 
Sbjct: 89  LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147

Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD-----MGDVTVL 210
            +     +ASV I+        +  A +R +VA+++P +         +TV+
Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGMTTAVDNPQKLTVI 199


>gi|167566308|ref|ZP_02359224.1| lipoprotein transmembrane protein [Burkholderia oklahomensis EO147]
          Length = 258

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 37  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+   F
Sbjct: 97  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPF 155

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V       +      
Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVTSVAADPIDLVSAG 215

Query: 224 RNILGK 229
           +    K
Sbjct: 216 QPPARK 221


>gi|330812416|ref|YP_004356878.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380524|gb|AEA71874.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 295

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+  L   D N +   L+  N++   ++  +G ++ V  + +  A   L A GLP 
Sbjct: 20  ERTALHSHLSEQDANEVIAELANKNVEASKQVDKDGLTVLVEPADMNSAVQVLEAAGLPR 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            S +S  E+F K      T   +    + AL  E+  T+  I G+V ARVH+V+P+  + 
Sbjct: 80  RSRSSLGEIFRKEGVI-STPMEERARYIYALSQELESTLSQIDGVVLARVHVVLPERVAP 138

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DMGDVTVL 210
            +     +ASV I+  N     S    +R+LVA+ +P +     +   ++V+
Sbjct: 139 GEPVQPASASVFIKHTNALDPDSITPRVRNLVASGIPGMADATQNPTKLSVV 190


>gi|171319020|ref|ZP_02908147.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
 gi|171095775|gb|EDT40728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MEX-5]
          Length = 264

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 5/181 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89
           ++  + A   + +     L+ ++   D N +   L  A +         +G  +SV S+ 
Sbjct: 1   MLSAVLAVISLTACGNAALFDQINERDANEMLSVLGRAGVAAEKDQRSADGWRLSVASAD 60

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           V  A   L++ GLP     S  ELF K      T   + +  V A+  E++RTI +I G+
Sbjct: 61  VSVALEILSSAGLPRERYKSIGELFPKE-GLISTPVEEHMRSVYAISQELSRTISNIDGV 119

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVT 208
           + ARVH+ +P      ++   PTASV+++       + +  AI+ LV  A+ +LD  +VT
Sbjct: 120 ITARVHLNIPRREPLLRVQQTPTASVLVKYRAEVSMQPNTLAIKDLVVGAIKDLDRANVT 179

Query: 209 V 209
           V
Sbjct: 180 V 180


>gi|85706154|ref|ZP_01037249.1| flagellar M-ring protein FliF [Roseovarius sp. 217]
 gi|85669318|gb|EAQ24184.1| flagellar M-ring protein FliF [Roseovarius sp. 217]
          Length = 268

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 112/266 (42%), Gaps = 4/266 (1%)

Query: 290 LSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH 349
              + + + ++   S VTV  N+P           S     +  E+ NYE+++     T 
Sbjct: 5   TDTEERANTSNDQSSDVTVASNLPD--GDVAANGASASENTETRERINYEVSSTEREITQ 62

Query: 350 DNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITIT 409
               ++R+S+A+++N     +  G  +   + +  L  +  +V AA GI+  RGD +TI 
Sbjct: 63  QPGAIKRMSVAILINGLTTLDASGTPSFALRPEEELTALRDLVVAAVGIDEARGDVVTIR 122

Query: 410 SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           ++ F E    +   V+ S +D L+    T++ +LV  +  L++    L  +     +  +
Sbjct: 123 TLQF-EPIEPSGTLVEASLLDRLAIDVMTLVQSLVLAIVALILGLFVLRPILSRPPLMAS 181

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
            +      +        S V      +++   D S + +   SR   SRI+    +   +
Sbjct: 182 SQIGRLAVASQPEIMPLSGVIDDGEIDESGLSDVSEKALIDRSRQPLSRIDGPP-EDPVV 240

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
           RL  +I   +E   +ILR W   E E
Sbjct: 241 RLRSLIGQRQEETVEILRNWLEGEEE 266


>gi|83716240|ref|YP_438944.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
 gi|83650065|gb|ABC34129.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
          Length = 285

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 37  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 97  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 156 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 202


>gi|76819642|ref|YP_335842.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|76584115|gb|ABA53589.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
          Length = 282

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 34  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 93

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 94  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 152

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 153 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 199


>gi|167743335|ref|ZP_02416109.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 14]
          Length = 230

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|330940716|gb|EGH43724.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 251

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 82/248 (33%), Gaps = 16/248 (6%)

Query: 308 VEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGR 367
                        P         + +   N+E++     T     +L RLS+AVVV+   
Sbjct: 19  ANGQQIMDPATGQPALAPYPADKRVQSTKNFELDRSISHTKQQQGRLTRLSVAVVVDDMV 78

Query: 368 LTEV-LGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
            T    G  +      + LA   ++V  A G ++ RGD++++ ++ F   +         
Sbjct: 79  KTNAANGEVSRAPWSAADLARFTRLVQDAVGFDASRGDSVSVINVPFSSERAEVLPEASF 138

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
                    F  ++   V ++  L++ F  L  +         K+    G          
Sbjct: 139 ----YSQPWFWDIVKQAVGVIFILILVFGVLRPVLNNITNGKRKELAGFGG---DAELGG 191

Query: 487 SAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                G + ND ++L      +            +         +  ++  +  R A+++
Sbjct: 192 MGGLDGELSNDRVSLGGPQSILLPSP--------TEGYDAQLNAIKSLVAEDPGRVAQVV 243

Query: 547 RKWARSEI 554
           ++W  ++ 
Sbjct: 244 KEWINTDE 251


>gi|167924750|ref|ZP_02511841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei BCC215]
          Length = 243

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167907276|ref|ZP_02494481.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei NCTC 13177]
          Length = 244

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167850348|ref|ZP_02475856.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei B7210]
          Length = 242

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167840290|ref|ZP_02466974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia thailandensis MSMB43]
          Length = 253

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 35  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 94

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 95  ARYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 153

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 154 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 200


>gi|167573409|ref|ZP_02366283.1| lipoprotein transmembrane protein [Burkholderia oklahomensis C6786]
          Length = 262

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 37  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 96

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 97  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 155

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V       +      
Sbjct: 156 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVTSVAADPIDLVSAG 215

Query: 224 RNILGK 229
           +    K
Sbjct: 216 QPPARK 221


>gi|323530318|ref|YP_004232470.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1001]
 gi|323387320|gb|ADX59410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1001]
          Length = 282

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N + VAL E  +D   S        ++ V    + +A   L  +GLP + 
Sbjct: 41  LYRNLTEQDANEMVVALLEQGVDASKSTVDNGKTWTLEVDDKQLVRAMQVLRERGLPHNR 100

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    LF K +    T   + +  +  L  E++ T+  I G++ ARV IV+P+     +
Sbjct: 101 YDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPLAQ 159

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 160 QMKPSSASVFIKYRPDSDASALVPQIKTLVMHSVEGLTYDAVSVT 204


>gi|217425426|ref|ZP_03456920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|217391677|gb|EEC31705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
          Length = 274

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 11  LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 70  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 189 YDQVSVT 195


>gi|167915637|ref|ZP_02502728.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 112]
          Length = 239

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|257142047|ref|ZP_05590309.1| lipoprotein transmembrane protein [Burkholderia thailandensis E264]
          Length = 287

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 39  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 98

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 99  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 157

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 158 AQVAKPSSASVFIKYRPSANLATLTPQIKNLVVHSVEGLTYDEVSVT 204


>gi|167584002|ref|ZP_02376390.1| lipoprotein transmembrane protein [Burkholderia ubonensis Bu]
          Length = 227

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 22  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 82  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 140

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 141 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 187


>gi|126442814|ref|YP_001063279.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126222305|gb|ABN85810.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
          Length = 284

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|53722647|ref|YP_111632.1| type III secretion protein [Burkholderia pseudomallei K96243]
 gi|126457668|ref|YP_001076235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|217422397|ref|ZP_03453900.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|242312420|ref|ZP_04811437.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254264523|ref|ZP_04955388.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|52213061|emb|CAH39099.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
 gi|126231436|gb|ABN94849.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|217394628|gb|EEC34647.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|242135659|gb|EES22062.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254215525|gb|EET04910.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 284

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|237509505|ref|ZP_04522220.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001710|gb|EEP51134.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
          Length = 277

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|167724370|ref|ZP_02407606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
          Length = 236

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|226198447|ref|ZP_03794015.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254186953|ref|ZP_04893469.1| lipoprotein transmembrane protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157934637|gb|EDO90307.1| lipoprotein transmembrane protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225929504|gb|EEH25523.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 270

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|260775676|ref|ZP_05884572.1| type III secretion bridge between inner and outermembrane
           lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608092|gb|EEX34261.1| type III secretion bridge between inner and outermembrane
           lipoprotein (yscJ,HrcJ,EscJ PscJ) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 268

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 6/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMV 90
           + + +             L   L   D N +  ALS+ NI     +  NG +I V S+ +
Sbjct: 13  VFMGILLVLLTGCSEQVELNSGLLERDANAVLSALSDKNISAEKRMDKNGVTILVNSNQM 72

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
           GKA   L+  GLP +  +S   +F        T   ++   + AL  E+  T+  I G+V
Sbjct: 73  GKALRVLSIAGLPKAPHDSLGSMFPNDGVI-STPLEEQARYIHALSQELEYTLSEIDGVV 131

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNL--DMGDV 207
            ARVH+V+P+  +  +  +  +ASV I+          +  I+ LVA ++P L  +   +
Sbjct: 132 LARVHVVLPEKIAPGEPISPASASVFIKHQTTLDPDVIKNRIQRLVAGSIPGLIDNKNKL 191

Query: 208 TVL 210
           +V+
Sbjct: 192 SVV 194


>gi|14719872|gb|AAK73236.1| SctJ [Burkholderia pseudomallei]
 gi|48479054|gb|AAT44850.1| lipoprotein transmembrane protein [Burkholderia pseudomallei]
          Length = 274

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 11  LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 70  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 189 YDQVSVT 195


>gi|134282063|ref|ZP_01768769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246592|gb|EBA46680.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 284

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSSISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +          +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDDGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|53722424|ref|YP_111409.1| type III secretion associated protein [Burkholderia pseudomallei
           K96243]
 gi|52212838|emb|CAH38872.1| putative type III secretion associated protein [Burkholderia
           pseudomallei K96243]
          Length = 274

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 11  LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 70  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 189 YDQVSVT 195


>gi|167820515|ref|ZP_02452195.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 91]
 gi|167828888|ref|ZP_02460359.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 9]
          Length = 235

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|307725653|ref|YP_003908866.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1003]
 gi|307586178|gb|ADN59575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. CCGE1003]
          Length = 276

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N + VAL E  +D   S        ++ V    + +A   L  +GLP S 
Sbjct: 35  LYRNLTEQDANEMVVALLEQGVDASKSTVDNGKSWTLEVDDKQLVRAMQVLRERGLPHSR 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    LF K +    T   + +  +  L  E++ T+  I G++ ARV IV+P+     +
Sbjct: 95  YDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPLAQ 153

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 154 QMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 198


>gi|167906939|ref|ZP_02494144.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei NCTC 13177]
          Length = 269

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 6   LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 65  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 184 YDQVSVT 190


>gi|167742984|ref|ZP_02415758.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 14]
          Length = 274

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 11  LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 69

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 70  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 128

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 129 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 188

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 189 YDQVSVT 195


>gi|167898945|ref|ZP_02486346.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 7894]
          Length = 235

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|126442940|ref|YP_001062988.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126458134|ref|YP_001075935.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|167828530|ref|ZP_02460001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 9]
 gi|226199084|ref|ZP_03794646.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242313688|ref|ZP_04812705.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
 gi|254183797|ref|ZP_04890389.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1655]
 gi|254193806|ref|ZP_04900238.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|254301608|ref|ZP_04969052.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|126222431|gb|ABN85936.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
 gi|126231902|gb|ABN95315.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|157811474|gb|EDO88644.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|169650557|gb|EDS83250.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|184214330|gb|EDU11373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1655]
 gi|225928859|gb|EEH24884.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242136927|gb|EES23330.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106b]
          Length = 269

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 6   LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 65  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 184 YDQVSVT 190


>gi|254186712|ref|ZP_04893228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254263992|ref|ZP_04954857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|157934396|gb|EDO90066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254214994|gb|EET04379.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 269

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 6   LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 65  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 184 YDQVSVT 190


>gi|119034700|gb|ABL59995.1| SctJ [Lysobacter enzymogenes]
          Length = 281

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 7/170 (4%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQG 101
                LY +L+    N +  AL +A I      +    G  + V    +  A   L ++G
Sbjct: 40  CTRTPLYSQLDEQQANELMAALLDAGIPAEKDPSPSKTGWEVMVNRGDIPYAMQVLNSRG 99

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP +   S  E+F K   F  ++  ++   +  L  E++RT+  I G+V ARVHI +PD 
Sbjct: 100 LPRAQYRSLGEVF-KKEGFASSALEEKARYLYGLSQELSRTLTRIDGVVEARVHIALPDR 158

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-DMGDVTV 209
                     +ASV+I        +  E  I+  V  +V  L D+  VTV
Sbjct: 159 DPLGGNVQDSSASVLIFERPGQSLRDRETDIKVFVKDSVEGLDDVNKVTV 208


>gi|167898597|ref|ZP_02485998.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 7894]
 gi|237509740|ref|ZP_04522455.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
 gi|235001945|gb|EEP51369.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei MSHR346]
          Length = 269

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 6   LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 65  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLT 183

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 184 YDQVSVT 190


>gi|237678823|emb|CAQ57550.1| RhcJ protein [Bradyrhizobium elkanii]
          Length = 291

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY K++  + N +   L    +D       D  S+I V    +  +   L  +GLP  S 
Sbjct: 41  LYSKIQEREANEMLALLLGKGVDAARVVAKDGTSTIQVEERQLAYSIDLLNVEGLPRQSF 100

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+F K +    +   +    V AL  E++RTI  I G+++ARVH+V+P     R+ 
Sbjct: 101 KNLGEVF-KGSGLVASPIEERARYVYALSEELSRTISDIDGVLSARVHVVLPKNDLLRQD 159

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
               +ASV IR  + +   +    I+ LVA ++  L    V V+
Sbjct: 160 ATPSSASVFIRHGSNAKLSALLPQIKMLVANSIEGLSYDKVAVV 203


>gi|170690590|ref|ZP_02881757.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia graminis C4D1M]
 gi|170145025|gb|EDT13186.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia graminis C4D1M]
          Length = 282

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRIS----DNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L   D N + VAL E  +D   S        ++ V    +  A   L  +GLP S 
Sbjct: 41  LYRNLTEQDANEMVVALLEQGVDASKSTIDNGKTWTLEVDDKQLVHAMQVLRERGLPHSR 100

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    LF K +    T   + +  +  L  E++ T+  I G++ ARV IV+P+     +
Sbjct: 101 YDDLGSLF-KKDGLVSTPTEERVRFIYGLSQELSATLSKIDGVIVARVQIVLPNNDPLAQ 159

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    S   +    I+ LV  +V  L    V+V 
Sbjct: 160 QMKPSSASVFIKYRPDSDANALVPQIKTLVMHSVEGLTYDAVSVT 204


>gi|254193798|ref|ZP_04900230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|169650549|gb|EDS83242.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
          Length = 284

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI-SDNGS---SISVPSSMVGKARIHLAAQGLPS 104
             LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L A+GLP+
Sbjct: 36  QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVLRARGLPA 95

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
           +  +    LF K +    T   + +  +  +  E++ T+  I G+V ARVHIV+P+    
Sbjct: 96  TRYDDLGALF-KKDGLVSTPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPL 154

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ++    +ASV I+    +   +    I++LV  +V  L   +V+V 
Sbjct: 155 AQVAKPSSASVFIKYRPNANLATLTPQIKNLVVHSVEGLTYDEVSVT 201


>gi|294141012|ref|YP_003556990.1| type III secretion system apparatus lipoprotein [Shewanella
           violacea DSS12]
 gi|293327481|dbj|BAJ02212.1| type III secretion system apparatus lipoprotein [Shewanella
           violacea DSS12]
          Length = 243

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 79/204 (38%), Gaps = 6/204 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSIS--VPSSMVGKARIHLAAQGLPSSS 106
           L+  L   D N++   L   +ID    + D   +I+  +       A   L   G P   
Sbjct: 22  LFRDLSQDDANQMVALLMLHHIDAASELDDKSGTITLKIDKDQFINAVELLRQNGFPKPH 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +S  +LF        +   +E       E ++ RT+ ++ G+++ARV I   ++   R+
Sbjct: 82  YSSIEDLFPSGQ-LVTSPTQEEAKMNYLKEQQLERTLSTMDGVISARVTIAEMELDPNRR 140

Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
                +ASV I+    +   +A+  I+ L+  +V  L + +++V                
Sbjct: 141 EPTDKSASVFIKYSPQANLSNAKNNIKKLIQNSVTGLSVDNISVYLQESNYRYQPITPST 200

Query: 226 ILGKSLSIVQAIQHEIEMNINKAL 249
               +  ++ AI+      +   L
Sbjct: 201 SHTGNSGLLSAIETYKLPLVTGLL 224


>gi|167567951|ref|ZP_02360867.1| type III secretion associated protein [Burkholderia oklahomensis
           EO147]
 gi|167573175|ref|ZP_02366049.1| type III secretion associated protein [Burkholderia oklahomensis
           C6786]
          Length = 260

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS-DNGS---SISVPSS 88
           ++  +A    +     + LY  L   DVN + VAL E  +D      +G    ++ V S 
Sbjct: 1   MVCVLALSVQLTGCKKE-LYGGLSEQDVNEMLVALLENGVDASKETADGGKNWTLGVESD 59

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            +  A   L A+GLP S  +    LF K +    T   + I  +  +  E++ T+  I G
Sbjct: 60  QLVHAMGVLRARGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 118

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           ++ ARV IV+P+     +     +ASV I+    S   +    I+ LV  +V  L    V
Sbjct: 119 VLVARVQIVLPNNDPLAQAAKPSSASVFIKYRPSSDIGALIPQIKTLVMHSVEGLTYEQV 178

Query: 208 TVL 210
           +V 
Sbjct: 179 SVT 181


>gi|167915298|ref|ZP_02502389.1| type III secretion associated protein [Burkholderia pseudomallei
           112]
          Length = 262

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88
           ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++V   
Sbjct: 3   LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+  I G
Sbjct: 62  QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           ++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L    V
Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180

Query: 208 TVL 210
           +V 
Sbjct: 181 SVT 183


>gi|149926067|ref|ZP_01914330.1| putative type III secretion protein [Limnobacter sp. MED105]
 gi|149825355|gb|EDM84566.1| putative type III secretion protein [Limnobacter sp. MED105]
          Length = 265

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   + N I  +L EA I    S    G  ISVP  M   A   L +QGLP +   
Sbjct: 30  LFSGLSQEEGNEIYSSLLEAGIPVEKSSGKEGVIISVPKQMSSDALRILQSQGLPRAKKT 89

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           S  E+F K +    +   +    + AL  E+  T+ S+ G+++ARVHIV+P+  +  ++ 
Sbjct: 90  SMGEVFKKESMI-SSPLEERARYLYALSQELEETLMSMDGVLSARVHIVLPERANPGEVL 148

Query: 169 ARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLD 203
           +  +A+V ++  N S + +    +R L+  ++P + 
Sbjct: 149 SPSSAAVFVKYENGSSFPAYVPRVRELIFKSIPGIT 184


>gi|15042153|gb|AAK81934.1|AF292566_18 RscJ [Pseudomonas fluorescens]
          Length = 271

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 9/172 (5%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDF-RI-SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L+ +L   + N +   L++ +I   +I + +G ++SV ++ +G+A   L A GLP 
Sbjct: 29  DRVELHRQLSEQEANEVIAELADKHIRALQIPTKDGVTVSVDTNDIGRAVRTLEAVGLPK 88

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  + F K      T   +    + AL  E+  T+ +I G++ ARVH+V+P+  + 
Sbjct: 89  LARATLGDTFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAP 147

Query: 165 RKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD-----MGDVTVL 210
            +     +ASV I+        +  A +R +VA+++P +         +TV+
Sbjct: 148 GEPVQPASASVFIKHDPRLDPDNIRARVRRMVASSIPGMTTAVDNPQKLTVI 199


>gi|307947525|ref|ZP_07662858.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
 gi|307769343|gb|EFO28571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Roseibium sp. TrichSKD4]
          Length = 250

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 10/197 (5%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-- 74
           L   +  +     +  I++        +      LY KL+  DVN ++  L    I    
Sbjct: 4   LSSIKRFLPNGRFVAAILVAAFLAGCQSE-----LYSKLDERDVNEMAFVLESNGISVSR 58

Query: 75  -RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
            R S+   ++ +      +A   LA  GLP    +   E+F        T+F ++   + 
Sbjct: 59  ERDSEGTYTLFIERGDTARAYGILAQNGLPRQKFDGLGEVFSSD-KLVSTAFEEKARFIH 117

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIR 192
           A+  E++++I  I+G+ +A VHI +P+     +  A   A+V I     +        I+
Sbjct: 118 AVTEELSKSISRIAGVTSAEVHITLPEKAPLEEETAPSRAAVFIYHSQGTDLNAQIPVIK 177

Query: 193 HLVAAAVPNLDMGDVTV 209
           +LVA++V  L   DV+V
Sbjct: 178 NLVASSVERLSYEDVSV 194


>gi|27376924|ref|NP_768453.1| RhcJ protein [Bradyrhizobium japonicum USDA 110]
 gi|12620520|gb|AAG60796.1|AF322012_101 RhcJ [Bradyrhizobium japonicum]
 gi|27350066|dbj|BAC47078.1| RhcJ protein [Bradyrhizobium japonicum USDA 110]
          Length = 287

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 8/184 (4%)

Query: 31  VPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPS 87
           V + + +             LY K++  + N +   L    +D       D  S+I V  
Sbjct: 21  VFLAMPLLLSLIGCKTD---LYTKIQEREANEMLALLLGKGVDAVRVVAKDGTSTIQVEE 77

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
             +  +   L  +GLP  S  +  E+F K +    +   +    V AL  E++RTI  I 
Sbjct: 78  KQLAYSIDLLNVEGLPRQSFKNLGEVF-KGSGLVASPIEERARYVYALSEELSRTISDID 136

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206
           G+++ARVH+V+P     R+     +ASV IR  + +   +    I+ LVA ++  L    
Sbjct: 137 GVLSARVHVVLPKNDLLRQGATPSSASVFIRHGSSARLSALLPQIKMLVANSIEGLSYDK 196

Query: 207 VTVL 210
           V V+
Sbjct: 197 VAVV 200


>gi|330963702|gb|EGH63962.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 259

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86
           ++ +++       + +    +LY  L   + N +   L    I    ++ DNG   + V 
Sbjct: 7   VLRLLIVATLASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                +A   L   GLP  S ++  E+F K N    +   +    V AL  E++ T+  I
Sbjct: 66  EKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205
            GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ LVA  +  L   
Sbjct: 125 DGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTLVANGISGLGYD 184

Query: 206 DVTVL 210
            V+V 
Sbjct: 185 GVSVT 189


>gi|297748689|gb|ADI51235.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia
           trachomatis D-EC]
 gi|297749569|gb|ADI52247.1| type III secretion cytoplasmic membrane protein SctJ [Chlamydia
           trachomatis D-LC]
          Length = 333

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 17  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 76

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 77  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 135

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 136 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 192

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           VP L   +V+V+                L   ++ 
Sbjct: 193 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 227


>gi|167724015|ref|ZP_02407251.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
 gi|167849989|ref|ZP_02475497.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei B7210]
          Length = 262

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88
           ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++V   
Sbjct: 3   LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+  I G
Sbjct: 62  QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           ++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L    V
Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180

Query: 208 TVL 210
           +V 
Sbjct: 181 SVT 183


>gi|167820155|ref|ZP_02451835.1| type III secretion associated protein [Burkholderia pseudomallei
           91]
          Length = 262

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88
           ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++V   
Sbjct: 3   LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+  I G
Sbjct: 62  QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           ++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L    V
Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180

Query: 208 TVL 210
           +V 
Sbjct: 181 SVT 183


>gi|317407862|gb|EFV87788.1| BscJ protein [Achromobacter xylosoxidans C54]
          Length = 284

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 10/202 (4%)

Query: 11  FKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA 70
           F+   +    R + L   +L+ + +  A           +L   +   + N +   L +A
Sbjct: 8   FRRLGARRGYRRVWLIGSLLLLLAMLTACG------ARVDLLAAVPEGEANEVLSVLLDA 61

Query: 71  NIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
            I  + S    G +I+V +  V +A   L A+GLP    +   ++F K      +   + 
Sbjct: 62  GIAAQKSAGKAGVAINVQADQVAQALAVLRARGLPRERFDGMGQIFRKE-GLVSSPLEER 120

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS- 187
              + AL  E+A T+  + G++AARVH+V+P+ G   +     TA+V I+        + 
Sbjct: 121 ARYIYALSQELANTLSQMDGVIAARVHVVLPERGGVGEEATPSTAAVFIKTQPGYALDAL 180

Query: 188 AEAIRHLVAAAVPNLDMGDVTV 209
              IR LV  A+P L    V+V
Sbjct: 181 LPQIRRLVIHAIPGLSEDKVSV 202


>gi|76818699|ref|YP_335583.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
 gi|76583172|gb|ABA52646.1| lipoprotein transmembrane protein [Burkholderia pseudomallei 1710b]
          Length = 262

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSS 88
           ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++V   
Sbjct: 3   LLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGD 61

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+  I G
Sbjct: 62  QLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDG 120

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           ++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L    V
Sbjct: 121 VLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQV 180

Query: 208 TVL 210
           +V 
Sbjct: 181 SVT 183


>gi|251789507|ref|YP_003004228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           zeae Ech1591]
 gi|247538128|gb|ACT06749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           zeae Ech1591]
          Length = 261

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMV 90
            +  + A           L+  L  +D N +  AL   +I      +  G SI +    +
Sbjct: 10  FLTLLLAMLIAGCGDRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDM 69

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   L A GLP  +  +  ++F K      T   +    + AL  E+  T+  I G++
Sbjct: 70  ERAVNILNAAGLPRQARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVL 128

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            ARVH+V+P+  +  +     +A+V I+        S    IR +VA+++P L 
Sbjct: 129 VARVHVVLPERIAPGEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 182


>gi|302185345|ref|ZP_07262018.1| putative type III secretion protein [Pseudomonas syringae pv.
           syringae 642]
 gi|256259415|gb|ACU65052.1| HrcJ [Pseudomonas syringae pv. syringae]
          Length = 276

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 86/186 (46%), Gaps = 10/186 (5%)

Query: 34  MLFMAARFFVNSPHYDN-LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMV 90
           +  +     +++   +  L+ KL  +D N +   LS  +I+     N  G S+ + +S +
Sbjct: 8   LGMIGLVLLLSACGDEIELHGKLSENDANDVIAELSSKHIEATKRSNKEGVSVLLSASDI 67

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   L A GLP  +  +  E+F K      T   +    + AL  E+  T+  I G++
Sbjct: 68  NRAVRVLEAAGLPRRTRTNLGEIFKKEGVI-STPLEERARYIYALSQELEATLSQIDGVI 126

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DM 204
            ARVH+V+P+  +  +     +A+V I+        +    IR +V++++P +     + 
Sbjct: 127 VARVHVVLPERVAPGEPVQPASAAVFIKHAASLDPDTVLPRIRRMVSSSIPGMAGALDNT 186

Query: 205 GDVTVL 210
             ++V+
Sbjct: 187 EKLSVV 192


>gi|330876200|gb|EGH10349.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 259

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86
           ++ +++       + +    +LY  L   + N +   L    I    ++ DNG   + V 
Sbjct: 7   VLRLLIVATLASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                +A   L   GLP  S ++  E+F K N    +   +    V AL  E++ T+  I
Sbjct: 66  EKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205
            GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ LVA  +  L   
Sbjct: 125 DGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTLVANGISGLGYD 184

Query: 206 DVTVL 210
            V+V 
Sbjct: 185 GVSVT 189


>gi|134282581|ref|ZP_01769285.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246138|gb|EBA46228.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 269

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD-NGSS---IS 84
           ++V ++  +A    +     + LY  L   DVN + VAL E  +D      +G     ++
Sbjct: 6   LVVRLLGVLALSVLLAGCKKE-LYTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLN 64

Query: 85  VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQ 144
           V    +  A   L  +GLP S  +    LF K +    T   + I  +  +  E++ T+ 
Sbjct: 65  VDGDQLVHAMEVLRTRGLPRSKFDDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLS 123

Query: 145 SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            I G++ ARV IV+P+     +     +A+V I+    +   +    I+ LV  +V  L 
Sbjct: 124 KIDGVLVARVQIVLPNNDPLAQTAKPSSAAVFIKYRPSADITALTPQIKTLVMHSVEGLT 183

Query: 204 MGDVTVL 210
              V+V 
Sbjct: 184 YDQVSVT 190


>gi|255348939|ref|ZP_05380946.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 70]
 gi|255503478|ref|ZP_05381868.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 70s]
 gi|255507156|ref|ZP_05382795.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis D(s)2923]
 gi|289525604|emb|CBJ15082.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis Sweden2]
 gi|296435164|gb|ADH17342.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis E/150]
 gi|296438884|gb|ADH21037.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis E/11023]
          Length = 326

 Score =  124 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 19/215 (8%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           VP L   +V+V+                L   +  
Sbjct: 186 VPGLCPENVSVVSDRASYSDITINSPWGLSDEMDY 220


>gi|218887520|ref|YP_002436841.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758474|gb|ACL09373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 277

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMV 90
            L +     +       LY  L     N +   L    +          G ++SV    +
Sbjct: 19  ALAVFLLMLLTGCK-AELYKGLNEEQANTMLATLLRHGVPAEKLAAGKEGYALSVERDQI 77

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   L    LP     +  ++F   +    +   ++     A+  E++ T   I G++
Sbjct: 78  VRALEILRENSLPREQYQNLGKVF-SGDGMIASPSEEKARLAYAISQELSDTFSRIDGVL 136

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTV 209
            ARVH+V+    +  +     +A+V +R    S        IR L A AVP LD   V+V
Sbjct: 137 TARVHVVLASSETASETRVPASAAVFLRHGPESPVVNLIPKIRELAAKAVPGLDYERVSV 196

Query: 210 L 210
           +
Sbjct: 197 M 197


>gi|237800789|ref|ZP_04589250.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023647|gb|EGI03704.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 259

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 6/185 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86
           ++ +++       + +    +LY  L   + N +   L    I    ++ DNG   + V 
Sbjct: 7   VLRLLIVATLASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                +A   L   GLP  + ++  E+F K N    +   +    V AL  E++ T+  I
Sbjct: 66  EKRFAEAMAALDDAGLPGQTFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMG 205
            GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ LVA  +  L   
Sbjct: 125 DGILSARVHVVLPDNDLLKRVISPSSASVLVRYDPRTDINVLIPQIKTLVANGISGLGYD 184

Query: 206 DVTVL 210
            V+V 
Sbjct: 185 GVSVT 189


>gi|15605288|ref|NP_220074.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76789296|ref|YP_328382.1| SctJ [Chlamydia trachomatis A/HAR-13]
 gi|237804910|ref|YP_002889064.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|3329000|gb|AAC68161.1| Yop proteins translocation lipoprotein J [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167826|gb|AAX50834.1| SctJ [Chlamydia trachomatis A/HAR-13]
 gi|231273210|emb|CAX10123.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|296436092|gb|ADH18266.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/9768]
 gi|296437020|gb|ADH19190.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/11222]
 gi|296437953|gb|ADH20114.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/11074]
 gi|297140453|gb|ADH97211.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis G/9301]
          Length = 326

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           VP L   +V+V+                L   ++ 
Sbjct: 186 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 220


>gi|325921922|ref|ZP_08183733.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas gardneri ATCC 19865]
 gi|325547624|gb|EGD18667.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas gardneri ATCC 19865]
          Length = 254

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|255311377|ref|ZP_05353947.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 6276]
 gi|255317678|ref|ZP_05358924.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 6276s]
          Length = 326

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           VP L   +V+V+                L   ++ 
Sbjct: 186 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 220


>gi|188992467|ref|YP_001904477.1| HrcJ protein [Xanthomonas campestris pv. campestris str. B100]
 gi|167734227|emb|CAP52435.1| HrcJ protein [Xanthomonas campestris pv. campestris]
          Length = 254

 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|298487098|ref|ZP_07005148.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158341|gb|EFH99411.1| type III secretion system lipoprotein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 259

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +         + +    +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ L
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173

Query: 195 VAAAVPNLDMGDVTVL 210
           VA  +  L    V+V 
Sbjct: 174 VANGISGLGYDGVSVT 189


>gi|21230690|ref|NP_636607.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769315|ref|YP_244077.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21112279|gb|AAM40531.1| HrcJ protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574647|gb|AAY50057.1| HrcJ protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 254

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  A   L   G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKLTPDDGKTWAVNAPHDQVAYALNVLRTHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVQIVLPNNDPLSA 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|237802988|ref|YP_002888182.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/Jali20/OT]
 gi|231274222|emb|CAX11016.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis B/Jali20/OT]
          Length = 326

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 83/215 (38%), Gaps = 19/215 (8%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISF---SPEEEDQRPLTASVYIKYRGVLDNPNSIMVSKIKRLVASA 185

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           VP L   +V+V+                L   ++ 
Sbjct: 186 VPGLCPENVSVVSDRASYSDITINGPWGLSDEMNY 220


>gi|462730|sp|P33209|NOLT_RHIFR RecName: Full=Nodulation protein nolT; Flags: Precursor
 gi|152385|gb|AAB17677.1| nodulation protein [Sinorhizobium fredii]
 gi|19749322|gb|AAL98692.1| NolT [Sinorhizobium fredii]
          Length = 289

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY +L+  + N I   L +  +D  R++  D  S+I V   ++  +   L  +GLP  S 
Sbjct: 38  LYTQLQEREANEIVALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQSF 97

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+F + +    +   +    V AL  E++ TI  I G+ +ARVH+V+P     R  
Sbjct: 98  KNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAG 156

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
               +ASV IR    +   +    I+ LVA ++  L    V V+
Sbjct: 157 DTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200


>gi|83645997|ref|YP_434432.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
 gi|83634040|gb|ABC30007.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
          Length = 265

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSM 89
           +L      F+ S   + LY  L   +   +   L E  ++            ++SV  + 
Sbjct: 16  LLLGFLFVFILSGCKETLYSDLTEKEGAEMLSILLEEGLEAEKVPGQKGQTVALSVERAQ 75

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L ++G P     S  ELF K +    +   +    +  L  EIA T+  + G+
Sbjct: 76  LSQAIRLLKSRGYPRDDFTSVGELF-KKDGLISSPLEERARYIYGLSQEIAATLSQLDGV 134

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
           + ARVH+VMP++ + +      +ASV I+  +          I+ LV  ++  L   ++ 
Sbjct: 135 ITARVHVVMPEVENKKAPLKVSSASVFIKYESTVNLDDFVPQIKLLVNNSIEGLSYDNIA 194

Query: 209 V 209
           V
Sbjct: 195 V 195


>gi|330985209|gb|EGH83312.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 259

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 12/196 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +   +            +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASLL-------QTCDIDLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ L
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173

Query: 195 VAAAVPNLDMGDVTVL 210
           VA  +  L    V+V 
Sbjct: 174 VANGISGLGYDGVSVT 189


>gi|166154774|ref|YP_001654892.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 434/Bu]
 gi|301336048|ref|ZP_07224292.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2tet1]
 gi|165930762|emb|CAP04259.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis 434/Bu]
          Length = 325

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 20/215 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           VP L   +V+V+                L   +  
Sbjct: 185 VPGLYPENVSVVSDRASYSDITINGPWGLSDEMDY 219


>gi|323143306|ref|ZP_08077997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Succinatimonas hippei YIT 12066]
 gi|322416923|gb|EFY07566.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Succinatimonas hippei YIT 12066]
          Length = 252

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 5/183 (2%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSS 88
            +   +     +     + LY  L  SD N +   L +  +D +      NG +I V   
Sbjct: 5   FLGSAVILSAMLLCGCREALYSNLTESDANEMLSTLLQRGVDAKKISEGKNGFTIEVDEQ 64

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            + ++   +    LP     S   +F        +   ++     AL  E++ T   I G
Sbjct: 65  DLVRSLEIIKEHSLPREQFQSLGSVF-SGQGMISSQTEEQARLAYALSQELSATFSRIDG 123

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDV 207
           ++ ARVH+V+        +   P+A+V IR    S       +I+   A +VP L    V
Sbjct: 124 VLDARVHVVLVQHEQSSGVTTPPSAAVFIRHTKESPVVDMISSIKDTTARSVPGLTHDRV 183

Query: 208 TVL 210
            V+
Sbjct: 184 AVM 186


>gi|166714023|ref|ZP_02245230.1| HrpB3 [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|61219462|gb|AAX40639.1| HrpB3 [Xanthomonas oryzae pv. oryzicola]
          Length = 254

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  PS  V  +   L A GLP   
Sbjct: 23  LYSGLTENDANAMLEVLLHAGVDASKVTPDDGKTWAVNAPSDQVSYSLETLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ +V  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSMVPNIKTMVMHSVEGLTYENVSVT 186


>gi|166155649|ref|YP_001653904.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|165931637|emb|CAP07213.1| type III secretion system protein, membrane component [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 325

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 20/215 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI-----SDNGSS----- 82
           + F+ A FF ++    ++    L   D N I V L    +  +      S  G S     
Sbjct: 10  LFFILALFFCSACDSRSMITHGLSGRDANEIVVLLVSKGVAAQKVPQAASSTGGSGEQLW 69

Query: 83  -ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
            ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A 
Sbjct: 70  DISVPAAQITEALAILNQAGLPRMKGTSLLDLFSK-QGLVPSEMQEKIRYQEGLSEQMAT 128

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAA 198
           TI+ + GIV A V I         +     TASV I+        +      I+ LVA+A
Sbjct: 129 TIRKMDGIVDASVQISFSPE----EDQRPLTASVYIKHRGVLDNPNSIMVSKIKRLVASA 184

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           VP L   +V+V+                L   +  
Sbjct: 185 VPGLYPENVSVVSDRASYSDITINGPWGLSDEMDY 219


>gi|331008651|gb|EGH88707.1| type III secretion component [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 259

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +         + +    +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ L
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173

Query: 195 VAAAVPNLDMGDVTVL 210
           VA  +  L    V+V 
Sbjct: 174 VANGISGLGYDGVSVT 189


>gi|30524897|gb|AAP34342.1|AF499777_10 HrcJ [Xanthomonas axonopodis pv. glycines]
          Length = 253

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D  +++ +     +I+ P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|221200558|ref|ZP_03573600.1| bcscJ [Burkholderia multivorans CGD2M]
 gi|221209215|ref|ZP_03582206.1| bcscJ [Burkholderia multivorans CGD2]
 gi|221170905|gb|EEE03361.1| bcscJ [Burkholderia multivorans CGD2]
 gi|221179899|gb|EEE12304.1| bcscJ [Burkholderia multivorans CGD2M]
          Length = 293

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|38639339|gb|AAR25805.1| BcscJ [Burkholderia multivorans E243]
          Length = 293

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|52631916|gb|AAU85366.1| nodulation protein [Sinorhizobium fredii]
          Length = 289

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY +L+  + N +   L +  +D  R++  D  S+I V   ++  +   L  +GLP  S 
Sbjct: 38  LYTQLQEREANEMLALLMDNGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNGKGLPRQSF 97

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+F + +    +   +    V AL  E++ TI  I G+ +ARVH+V+P     R  
Sbjct: 98  KNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAG 156

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
               +ASV IR    +   +    I+ LVA ++  L    V V+
Sbjct: 157 DTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200


>gi|78045985|ref|YP_362160.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325927680|ref|ZP_08188908.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas perforans 91-118]
 gi|462305|sp|P80152|HRB3_XANEU RecName: Full=Protein hrpB3; Flags: Precursor
 gi|398111|gb|AAA27604.1| hrpB3 [Xanthomonas campestris]
 gi|984880|gb|AAB08458.1| HrpB3 [Xanthomonas euvesicatoria]
 gi|78034415|emb|CAJ22060.1| HrcJ protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541881|gb|EGD13395.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas perforans 91-118]
          Length = 253

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|300693814|ref|YP_003749787.1| type III secretion system lipoprotein hrcj [Ralstonia solanacearum
           PSI07]
 gi|299075851|emb|CBJ35160.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           PSI07]
          Length = 269

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L  +D N +   L +A +D +          S
Sbjct: 12  GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGVDAQKTSPDDGKTWS 66

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L A GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 67  VLVDDDAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   S   +I++LV  +V  
Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTSLLPSIKNLVVHSVEG 185

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 186 LTYENVAVT 194


>gi|9885635|gb|AAG01458.1|AF282857_7 HrcJ [Pantoea stewartii subsp. stewartii]
          Length = 259

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVG 91
           ++ M+            L   L  +D N ++  L   +I      + +G ++ V ++ + 
Sbjct: 9   LILMSVLLLFGCNDQVELNHGLTENDANEVAAELGRYHIKAEKHTNKDGITVMVDTADLN 68

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
           +A   L A GLP  +  +  E+F K      T   +    + AL  E+  T+  I G++ 
Sbjct: 69  RAVHILDAAGLPRPTRTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIV 127

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
           ARVH+V+P+  +  +     +A+V I+             IR +VA+++P L 
Sbjct: 128 ARVHVVLPERVAPGEPILPASAAVFIKYRPELDPDVIEPRIRQMVASSLPGLA 180


>gi|221209594|ref|ZP_03582575.1| bcscJ [Burkholderia multivorans CGD1]
 gi|221170282|gb|EEE02748.1| bcscJ [Burkholderia multivorans CGD1]
          Length = 293

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|146305070|ref|YP_001185535.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Pseudomonas mendocina ymp]
 gi|145573271|gb|ABP82803.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pseudomonas mendocina ymp]
          Length = 272

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104
              +L+  L   D N +  +L E  I  R      G  ++V ++ + +A   L A GLP 
Sbjct: 20  DRTDLFSGLSELDANEVIASLGEHRISARKRAEKAGVVVTVDTAEINRAVRVLEAAGLPR 79

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  S  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 80  RARTSLGEIFKKEGVI-STPLEERARYIYALSQELESTLSQIDGVIVARVHVVLPERIAP 138

Query: 165 RKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDV 207
            +     +A+V I+        + +  I+ +V +++P L    V
Sbjct: 139 GEPVQPASAAVFIKHAASLEPDAVQRRIQQMVVSSIPGLASTGV 182


>gi|71734790|ref|YP_274723.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555343|gb|AAZ34554.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320324510|gb|EFW80587.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328370|gb|EFW84373.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330882195|gb|EGH16344.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 259

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +         + +    +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ L
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173

Query: 195 VAAAVPNLDMGDVTVL 210
           VA  +  L    V+V 
Sbjct: 174 VANGISGLGYDGVSVT 189


>gi|16520038|ref|NP_444158.1| outermembrane protein RhcJ; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2497732|sp|P55714|NOLT_RHISN RecName: Full=Nodulation protein nolT; Flags: Precursor
 gi|2182731|gb|AAB91945.1| outermembrane protein RhcJ; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 289

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY +L+  + N +   L ++ +D  R++  D  S+I V   ++  +   L A+GLP  S 
Sbjct: 38  LYTQLQEREANEMLALLMDSGVDAVRVAGKDGTSTIQVDEKLLAFSIKLLNAKGLPRQSF 97

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+F + +    +   +    V AL  E++ TI  I G+ +ARVH+V+P     R  
Sbjct: 98  KNLGEIF-QGSGLIASPTEERARYVYALSEELSHTISDIDGVFSARVHVVLPHNDLLRAG 156

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
               +ASV IR    +   +    I+ LVA ++  L    V V+
Sbjct: 157 DTPSSASVFIRHDAKTNLPALLPKIKMLVAESIEGLAYDKVEVV 200


>gi|1781392|gb|AAC44781.1| PscJ [Pseudomonas aeruginosa]
          Length = 248

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +      +      + V  S + +A   L  +G P  
Sbjct: 25  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 85  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190


>gi|21311402|gb|AAM46696.1|AF448202_7 HrcJ [Erwinia chrysanthemi]
          Length = 245

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 4/160 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104
               L+  L  +D N +  AL   +I      +  G SI +    + +A   L A GLP 
Sbjct: 8   DRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERAVNILNAAGLPR 67

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 68  QARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAP 126

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            +     +A+V I+        S    IR +VA+++P L 
Sbjct: 127 GEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 166


>gi|300310135|ref|YP_003774227.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae
           SmR1]
 gi|300072920|gb|ADJ62319.1| type III secretion HrcJ lipoprotein [Herbaspirillum seropedicae
           SmR1]
          Length = 292

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
              L   L  +D N I + L+   I+   +   +G ++ V    + +A   + A GLP  
Sbjct: 26  MVVLQAALNDADANEIILVLNRKGIEVDKQKGKDGVTLLVKDVELSRATETMNAAGLPRR 85

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S ++  E+F K      +   + I  +  L  E+  T+     +V+ARVH+V+P+  +  
Sbjct: 86  SLSNLGEVF-KKQGMISSPMEERIRYIHGLSEELESTMLQFDHVVSARVHVVLPERIAPG 144

Query: 166 KIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD----VTVLDSTGK 215
           +     +A+V ++   P    +    IR LVA+++P L   D    V+V+   G+
Sbjct: 145 EPIQPSSAAVFVKYRPPLDEDAVMPRIRRLVASSIPGLASEDGRSKVSVVMMPGE 199


>gi|289624381|ref|ZP_06457335.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646620|ref|ZP_06477963.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868635|gb|EGH03344.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 259

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 12/196 (6%)

Query: 19  RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RI 76
             R  +L  +I+  +         + +    +LY  L   + N +   L    I    ++
Sbjct: 2   PKRRRVLRLLIVATLASL------LQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKV 54

Query: 77  SDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            DNG   + V      +A   L   GLP  S ++  E+F K N    +   +    V AL
Sbjct: 55  QDNGQLKVMVDEKRFVQAMAALDDAGLPGQSFSNMGEIF-KGNGLVSSPVQERAQMVYAL 113

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHL 194
             E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R    +        I+ L
Sbjct: 114 SEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVRFDPRTDINVLIPQIKTL 173

Query: 195 VAAAVPNLDMGDVTVL 210
           VA  +  L    V+V 
Sbjct: 174 VANGISGLGYDGVSVT 189


>gi|161520293|ref|YP_001583720.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia multivorans ATCC 17616]
 gi|189353528|ref|YP_001949155.1| type III secretion protein SctJ [Burkholderia multivorans ATCC
           17616]
 gi|160344343|gb|ABX17428.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia multivorans ATCC 17616]
 gi|189337550|dbj|BAG46619.1| type III secretion protein SctJ [Burkholderia multivorans ATCC
           17616]
          Length = 293

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSEHDANQMIAVLGDAGISASKDNDARDASDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G++ ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVIVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|300697469|ref|YP_003748130.1| type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CFBP2957]
 gi|299074193|emb|CBJ53738.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CFBP2957]
          Length = 269

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L   D N +   L +A ID +          S
Sbjct: 12  GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTSPDDGKTWS 66

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L A GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 67  VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   +   +I++LV  +V  
Sbjct: 126 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 186 LTYENVAVT 194


>gi|299069234|emb|CBJ40494.1| Type III secretion system lipoprotein HrcJ [Ralstonia solanacearum
           CMR15]
          Length = 269

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L  +D N +   L +A ID +          S
Sbjct: 12  GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWS 66

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L   GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 67  VLVDDDAFARSMEVLHGHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   +   +I++LV  +V  
Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 186 LTYENVAVT 194


>gi|94496761|ref|ZP_01303336.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp.
           SKA58]
 gi|94423774|gb|EAT08800.1| hrp conserved lipoprotein hrcj transmembrane [Sphingomonas sp.
           SKA58]
          Length = 246

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 5/163 (3%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQGLPSSSSN 108
           Y +L+    N +  AL +A+ID   S +     +++V      KA   L A+GLP     
Sbjct: 27  YGQLKEGQANDMIAALRDAHIDAAKSADKDGQWAVAVSPDDFSKAIQLLRAKGLPREDFA 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +   LF+K      +   +    +  L  E++ T+  I G+V ARVH+ MP+        
Sbjct: 87  NLGSLFEKK-GLVSSPVEERARLIYGLSQELSHTVSEIDGVVQARVHLAMPEADPLSDKI 145

Query: 169 ARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
              +A++ ++            AI+ LV  ++  L    V+V+
Sbjct: 146 KPASAAIFVKYQPGYDLRSQTGAIKSLVTNSIEGLAYDKVSVV 188


>gi|58579711|ref|YP_198727.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84621745|ref|YP_449117.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|7350916|gb|AAF61284.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|9711586|dbj|BAB07855.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|24251290|gb|AAN46409.1| HrpB3 [Xanthomonas oryzae pv. oryzae]
 gi|50428349|dbj|BAD29986.1| HrcJ [Xanthomonas oryzae pv. oryzae]
 gi|58424305|gb|AAW73342.1| HrpB3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84365685|dbj|BAE66843.1| HrcJ protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 253

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 22  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 82  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 140

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ +V  +V  L   +V+V 
Sbjct: 141 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 185


>gi|294625833|ref|ZP_06704449.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|159024050|gb|ABW87278.1| HrcJ [Xanthomonas fuscans subsp. fuscans]
 gi|292599861|gb|EFF43982.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 253

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|219566957|dbj|BAH04988.1| Hrp conserved lipoprotein transmembrane protein [Ralstonia
           solanacearum]
          Length = 269

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L  +D N +   L +A ID +          S
Sbjct: 12  GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWS 66

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L A GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 67  VLVDDDAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   +   +I++LV  +V  
Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 186 LTYENVAVT 194


>gi|207724588|ref|YP_002254985.1| hrp lipoprotein hrcj [Ralstonia solanacearum MolK2]
 gi|206589810|emb|CAQ36771.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum MolK2]
          Length = 268

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L   D N +   L +A ID +          S
Sbjct: 11  GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWS 65

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L A GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 66  VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 124

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   +   +I++LV  +V  
Sbjct: 125 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 184

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 185 LTYENVAVT 193


>gi|207739223|ref|YP_002257616.1| hrp lipoprotein hrcj [Ralstonia solanacearum IPO1609]
 gi|206592596|emb|CAQ59502.1| hrp conserved lipoprotein hrcj [Ralstonia solanacearum IPO1609]
          Length = 267

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L   D N +   L +A ID +          S
Sbjct: 10  GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWS 64

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L A GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 65  VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 123

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   +   +I++LV  +V  
Sbjct: 124 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 183

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 184 LTYENVAVT 192


>gi|323388146|gb|ADX60342.1| inner/outer membrane type III secretion protein RscJ [Pseudomonas
           fluorescens]
          Length = 268

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
             L+ +L   + N +   L++  I  +   + +G  + V +S + +A   L A GLP  +
Sbjct: 24  VELHSRLSEQEANEVVAELADKQIRAQKVPAKDGVVVRVNASDISRAVRTLEAAGLPKLA 83

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            ++  ++F K      T   +    + AL  E+  T+ +I G++ ARVH+V+P+  +  +
Sbjct: 84  RSTLGDIFRKEGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHVVLPERIAPGE 142

Query: 167 IGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNL-----DMGDVTVL 210
                +ASV I+        +    +R +VA+++P +     +   +TV+
Sbjct: 143 PVQPASASVFIKHDPRLEPDNIRPRVRRMVASSIPGMAAAVENTQKLTVV 192


>gi|21241182|ref|NP_640764.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106489|gb|AAM35300.1| HrcJ protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 253

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN---GSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D  +++ +     +I+ P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAINAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLLPNIKTLVMHSVEGLTYENVSVT 186


>gi|325917018|ref|ZP_08179257.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325536769|gb|EGD08526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 254

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI----SDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D            +I+ P + V  +   L A G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLTAGVDAEKVTPDDGKTWAINAPHAQVAYSLEVLRAHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S   +I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPSIKTLVMHSVEGLTYENVSVT 186


>gi|188574352|ref|YP_001911281.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518804|gb|ACD56749.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 246

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 15  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEALRAHGLPHER 74

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 75  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLAT 133

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ +V  +V  L   +V+V 
Sbjct: 134 SVKPSSAAVFIKFRVGSDLTSLVPNIKTMVMHSVEGLTYENVSVT 178


>gi|120609169|ref|YP_968847.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Acidovorax citrulli AAC00-1]
 gi|58700620|gb|AAW81011.1| HrcJ [Acidovorax citrulli]
 gi|120587633|gb|ABM31073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax citrulli AAC00-1]
          Length = 287

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY K   +D N +  AL E+ ID   + +      ++ V  S V ++   L + GLP   
Sbjct: 35  LYTKQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++  T+  I G+V ARV IV+P+      
Sbjct: 95  HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153

Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    +        I+++VA +V  L   +VTV 
Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198


>gi|83747854|ref|ZP_00944887.1| HrcJ [Ralstonia solanacearum UW551]
 gi|83725501|gb|EAP72646.1| HrcJ [Ralstonia solanacearum UW551]
          Length = 269

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L   D N +   L +A ID +          S
Sbjct: 12  GALVVALALTTLLAGCNKQ-----LFAQLTEVDANDMLTVLLQAGIDAQKTTPDDGKTWS 66

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L A GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 67  VLVDDEAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   +   +I++LV  +V  
Sbjct: 126 LSRIDGVAVANVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 186 LTYENVAVT 194


>gi|17549088|ref|NP_522428.1| Hrp conserved lipoprotein HRCJ transmembrane [Ralstonia
           solanacearum GMI1000]
 gi|6066708|emb|CAB58254.1| HrpI protein [Ralstonia solanacearum]
 gi|17431339|emb|CAD18018.1| hrp conserved lipoprotein hrcj transmembrane [Ralstonia
           solanacearum GMI1000]
 gi|1097287|prf||2113360N hrpI gene
          Length = 269

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 11/189 (5%)

Query: 27  SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI----SDNGSS 82
             ++V + L               L+ +L  +D N +   L +A ID +          S
Sbjct: 12  GALVVALALTTLLAGCNKQ-----LFAQLTEADANDMLTVLLQAGIDAQKTSPDDGKTWS 66

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V      ++   L A GLP     +  ++F K +    T   + +  +  +  ++++T
Sbjct: 67  VLVDDDAFARSMEVLHAHGLPREKYANLGDIF-KKDGLISTPTEERVRFIYGVSQQLSQT 125

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
           +  I G+  A V IV+P+      +    +ASV I+    +   +   +I++LV  +V  
Sbjct: 126 LSRIDGVAVASVQIVLPNNDPLASVVKPSSASVFIKYRPTANVTALLPSIKNLVVHSVEG 185

Query: 202 LDMGDVTVL 210
           L   +V V 
Sbjct: 186 LTYENVAVT 194


>gi|326794378|ref|YP_004312198.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Marinomonas mediterranea MMB-1]
 gi|326545142|gb|ADZ90362.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Marinomonas mediterranea MMB-1]
          Length = 265

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+ KL   D N +   L+  +I+     +  G ++ V +S + +A   L A GLP     
Sbjct: 26  LHKKLSEEDANEVIAELASRHIEAEKKATKEGVTVLVEASSMARAVRILEAAGLPRKPRA 85

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      +   +    + AL  E+  TI  I GI+ ARVH+V+P+  +  +  
Sbjct: 86  NFGEVFKKEGVI-SSPLEERARYIYALSQELESTISQIDGILIARVHVVLPERIAPGEAV 144

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD--MGDVTVL 210
              +++V I+             I  LV  ++P L      ++V+
Sbjct: 145 QPASSAVFIKHRPDLDPDVIRPRIERLVRTSIPGLSEKPDKLSVV 189


>gi|313110409|ref|ZP_07796295.1| pscJ type III export protein [Pseudomonas aeruginosa 39016]
 gi|310882797|gb|EFQ41391.1| pscJ type III export protein [Pseudomonas aeruginosa 39016]
          Length = 244

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +      +      + V  S + +A   L  +G P  
Sbjct: 21  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 81  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 139

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 140 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 186


>gi|188532680|ref|YP_001906477.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027722|emb|CAO95575.1| HrcJ protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 257

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 4/163 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I     +  +G ++ V +  + +A   L A GLP 
Sbjct: 22  DRVELNHGLTENDANEVAAELGRYHIQAEKRNNKDGITVLVNAEELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206
            +     +A+V I+             IR +VA+++P L    
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLAARS 183


>gi|15596920|ref|NP_250414.1| type III export protein PscJ [Pseudomonas aeruginosa PAO1]
 gi|116049673|ref|YP_791522.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254240067|ref|ZP_04933389.1| type III export protein PscJ [Pseudomonas aeruginosa 2192]
 gi|9947698|gb|AAG05112.1|AE004598_11 type III export protein PscJ [Pseudomonas aeruginosa PAO1]
 gi|115584894|gb|ABJ10909.1| pscJ type III export protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126193445|gb|EAZ57508.1| type III export protein PscJ [Pseudomonas aeruginosa 2192]
          Length = 248

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +      +      + V  S + +A   L  +G P  
Sbjct: 25  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 85  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190


>gi|107101154|ref|ZP_01365072.1| hypothetical protein PaerPA_01002186 [Pseudomonas aeruginosa PACS2]
 gi|296389892|ref|ZP_06879367.1| type III export protein PscJ [Pseudomonas aeruginosa PAb1]
          Length = 238

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +      +      + V  S + +A   L  +G P  
Sbjct: 15  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 74

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 75  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 133

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 134 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 180


>gi|167923131|ref|ZP_02510222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei BCC215]
          Length = 243

 Score =  120 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRISD-NGSS---ISVPSSMVGKARIHLAAQGLPSSSS 107
           Y  L   DVN + VAL E  +D      +G     ++V    +  A   L  +GLP S  
Sbjct: 2   YTGLSEQDVNEMMVALLENGVDASKDSADGGKSWKLNVDGDQLVHAMEVLRTRGLPRSKF 61

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           +    LF K +    T   + I  +  +  E++ T+  I G++ ARV IV+P+     + 
Sbjct: 62  DDLGNLF-KKDGLVSTPTEERIRFIYGMSQELSSTLSKIDGVLVARVQIVLPNNDPLAQT 120

Query: 168 GARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V I+    +   +    I+ LV  +V  L    V+V 
Sbjct: 121 AKPSSAAVFIKYRPSADITALIPQIKTLVMHSVEGLTYDQVSVT 164


>gi|218892324|ref|YP_002441191.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58]
 gi|254234822|ref|ZP_04928145.1| type III export protein PscJ [Pseudomonas aeruginosa C3719]
 gi|126166753|gb|EAZ52264.1| type III export protein PscJ [Pseudomonas aeruginosa C3719]
 gi|218772550|emb|CAW28333.1| type III export protein PscJ [Pseudomonas aeruginosa LESB58]
          Length = 248

 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 66/167 (39%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +      +      + V  S + +A   L  +G P  
Sbjct: 25  VELYTGISQKEGNEMLALLRSEGVSADKQADKDGTVRLLVEESDIAEAVEVLKRKGYPRE 84

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSF 164
           + ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P +    
Sbjct: 85  NFSTLKDVFPKD-GLISSPIEERARLNYAKAQEISHTLSEIDGVLVARVHVVLPEERDGL 143

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            +  +  +ASV I+        +    I+ LV   +  L    ++V+
Sbjct: 144 GRKSSPASASVFIKHAADVQLDAYVPQIKQLVNNGIEGLSYDRISVV 190


>gi|54124981|gb|AAV30249.1| YscJ [Aeromonas hydrophila]
          Length = 245

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 69/184 (37%), Gaps = 7/184 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSS 88
            +M  +     +       LY  +   + N +   L    I      +      + V  S
Sbjct: 5   MLMGVVFTSLLLGGCK-VELYTGVSQKEGNEMLALLRTEGISSDKQPDKDGHVKLLVEES 63

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            V +A   L  +G P  S ++  ++F K      +   +      A   EI+ T+  I G
Sbjct: 64  DVAQAIEALKRKGYPRESFSTLQDVFPKD-GLISSPTEERARLNYAKAQEISHTLSEIDG 122

Query: 149 IVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206
           ++ ARVH+V+P+            +ASV I+        +    I+ LV  ++  L    
Sbjct: 123 VLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDR 182

Query: 207 VTVL 210
           ++V+
Sbjct: 183 ISVV 186


>gi|94987605|ref|YP_595538.1| putative type III secretion protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731854|emb|CAJ55217.1| putative type III secretion protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 278

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
             +Y  L     N +   L +  I     + G    +I V  S + ++   L   G P  
Sbjct: 43  VEVYQGLNEMQANAMLATLLKHGIVAEKQNTGKAGYTIRVDKSRLAESLELLRESGFPKE 102

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              S   +F        ++   +     AL  E+A T   ISG+++ARVH+ +       
Sbjct: 103 QYKSLGSIF-SGEGMIASASEDQARLSYALSQELAGTFSRISGVLSARVHVALASGDQEL 161

Query: 166 KIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +     +A++ +     S        IR L + +VP L    V+V+
Sbjct: 162 EQRTPASAAIFLLHTPSSPVVNLVPKIRELTSMSVPELSPDKVSVV 207


>gi|294665985|ref|ZP_06731248.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604233|gb|EFF47621.1| HrcJ protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 253

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A GLP   
Sbjct: 23  LYSGLTENDANDMLEVLLHAGVDASKVTPDDGKTWAVNAPHDQVSYSLEVLRAHGLPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G+++A V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVISADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRVGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|289663765|ref|ZP_06485346.1| HrcJ protein [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 254

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A G+P   
Sbjct: 23  LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 82

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 83  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 141

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 142 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 186


>gi|89111146|dbj|BAE80236.1| HrcJ [Acidovorax avenae subsp. avenae]
          Length = 287

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISD----NGSSISVPSSMVGKARIHLAAQGLPSSS 106
           LY +   +D N +  AL E+ ID   +        ++ V  S V ++   L + GLP   
Sbjct: 35  LYTRQTEADANDMVAALLESGIDAGKASADAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++  T+  I G+V ARV IV+P+      
Sbjct: 95  HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153

Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+    +        I+++VA +V  L   +VTV 
Sbjct: 154 TVKPASASVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198


>gi|27550044|gb|AAO18027.1| LscJ [Photorhabdus luminescens]
          Length = 245

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSM 89
           I+  M A   +     + LY  +   + N +   L EA I        +G+  + V  S 
Sbjct: 6   IICVMLAVLMLTGCKIE-LYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESD 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           V +A   L  +G P  + +S  ++F K      +   +      A   EIART+  I G+
Sbjct: 65  VAQAVEVLKRKGYPRENFSSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGV 123

Query: 150 VAARVHIVMPDM-GSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           + ARVH+V+P+      K  +  ++SV I+        +    I+ LV  ++  L    +
Sbjct: 124 LVARVHVVLPEEQDKLGKKLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRI 183

Query: 208 TVL 210
           +V+
Sbjct: 184 SVV 186


>gi|310766432|gb|ADP11382.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia sp. Ejp617]
          Length = 259

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      + +G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            +     +A+V I+             IR +VA+++P L 
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGLA 180


>gi|253988512|ref|YP_003039868.1| type III secretion component protein sctj [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211637906|emb|CAR66535.1| type iii secretion component protein sctj [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779962|emb|CAQ83123.1| type iii secretion component protein sctj [Photorhabdus
           asymbiotica]
          Length = 245

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSM 89
           I+  + A   +     + LY  +   + N +   L EA I        +G+  + V  S 
Sbjct: 6   IICVLLAVLMLAGCKIE-LYTGVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESD 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           V +A   L ++G P  + +S  ++F K      +   +      A   EIART+  I G+
Sbjct: 65  VAQAVEVLKSKGYPRENFSSLQDVFPKD-GLISSPVEERARLNFAKAQEIARTLSEIDGV 123

Query: 150 VAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           + ARVH+V+P+      K     ++SV I+        +    I+ LV  ++  L    +
Sbjct: 124 LVARVHVVLPEEQDRLGKKLLPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRI 183

Query: 208 TVL 210
           +V+
Sbjct: 184 SVV 186


>gi|259909704|ref|YP_002650060.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96]
 gi|76152302|gb|ABA39803.1| HrcJ [Erwinia pyrifoliae]
 gi|224965326|emb|CAX56858.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcJ protein [Erwinia pyrifoliae Ep1/96]
 gi|283479790|emb|CAY75706.1| Type III secretion inner-membreane protein HrcJ [Erwinia pyrifoliae
           DSM 12163]
          Length = 259

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 4/160 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      + +G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            +     +A+V I+             IR +VA+++P L 
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDIIEPRIRRMVASSLPGLA 180


>gi|37527647|ref|NP_930991.1| Type III secretion component protein SctJ [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787082|emb|CAE16157.1| Type III secretion component protein SctJ [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 245

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSM 89
           I+  M A   +     + LY  +   + N +   L EA I        +G+  + V  S 
Sbjct: 6   IICVMLAVLMLTGCKIE-LYTDVSQKEGNEMLALLREAGISSDKQPDKDGNIKLLVEESD 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           V +A   L  +G P  + +S  ++F K      +   +      A   EIART+  I G+
Sbjct: 65  VAQAVEVLKRKGYPRENFSSLQDVFPKD-GLISSPIEERARLNFAKAQEIARTLSEIDGV 123

Query: 150 VAARVHIVMPDMGSF-RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           + ARVH+V+P+      K  +  ++SV I+        +    I+ LV  ++  L    +
Sbjct: 124 LVARVHVVLPEEQDRLGKKLSPASSSVFIKHAADVQLDTYIPQIKQLVNNSIEGLSYDRI 183

Query: 208 TVL 210
           +V+
Sbjct: 184 SVV 186


>gi|289668187|ref|ZP_06489262.1| HrcJ protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 246

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISV--PSSMVGKARIHLAAQGLPSSS 106
           LY  L  +D N +   L  A +D      D+G + +V  P   V  +   L A G+P   
Sbjct: 15  LYSGLTENDANDMLAVLLRAGVDASKVTPDDGKTWAVNAPRDQVAYSLDVLRAHGMPHER 74

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K +    T   + +  +  +  ++++T+ +I G++AA V IV+P+      
Sbjct: 75  HANLGEMF-KKDGLISTPTEERVRFIYGVSQQLSQTLSNIDGVIAADVEIVLPNNDPLST 133

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    S   S    I+ LV  +V  L   +V+V 
Sbjct: 134 SVKPSSAAVFIKFRLGSDLTSLVPNIKTLVMHSVEGLTYENVSVT 178


>gi|238785747|ref|ZP_04629720.1| Type III secretion system apparatus lipoprotein [Yersinia
           bercovieri ATCC 43970]
 gi|238713330|gb|EEQ05369.1| Type III secretion system apparatus lipoprotein [Yersinia
           bercovieri ATCC 43970]
          Length = 236

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 8/227 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSM 89
           ++        ++    + LY  L   + N++   L    I      +     S+SV  + 
Sbjct: 1   MVATWLVVVSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSDKGGAVSLSVDKNQ 59

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     +  ELF        +   ++   V   E ++   +  + G+
Sbjct: 60  FINAVELLRQNGFPRQQFTTVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 118

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVT 208
           + A V I MP      K      ASV I+             I++L+  AVP +D   ++
Sbjct: 119 IHADVTIAMPAPT-DGKSSVPHAASVFIKYSPEVNLLIYQPQIKNLIRDAVPGIDYAQIS 177

Query: 209 VLDSTGKL-LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
           V+        +A    ++ +G+ L  +      +++ +   L   +G
Sbjct: 178 VVMQPANYRFSATPPAQSGMGRGLQWLLRHGEIVQIVLGALLILLVG 224


>gi|46398281|gb|AAS91835.1| AscJ [Aeromonas hydrophila]
          Length = 246

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSS-ISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    I        +G+  + V  S V +A   L  +G P  
Sbjct: 21  VELYTGVSQKEGNEMLALLQTEGISSDKQPDKDGNIKLLVEESDVAQAIETLKRKGYPRE 80

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSF 164
           S ++  ++F K      +   +      A   EI+ T+  I G++ ARVH+V+P+    F
Sbjct: 81  SFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDGVLVARVHVVLPEGNEGF 139

Query: 165 RKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
            K  +  +ASV I+        +    I+ LV  ++  L    ++V+
Sbjct: 140 NKKTSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDRISVV 186


>gi|33593247|ref|NP_880891.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603227|emb|CAC79572.1| bscJ [Bordetella pertussis Tohama I]
 gi|33563622|emb|CAE42523.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382656|gb|AEE67503.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 274

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|2935534|gb|AAC38609.1| BscJ [Bordetella bronchiseptica]
          Length = 274

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|33600610|ref|NP_888170.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568209|emb|CAE32122.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
          Length = 274

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|271500435|ref|YP_003333460.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           dadantii Ech586]
 gi|270343990|gb|ACZ76755.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Dickeya
           dadantii Ech586]
          Length = 268

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 4/160 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPS 104
               L+  L  +D N +  AL   +I      +  G SI +    + ++   L A GLP 
Sbjct: 24  DRVELHRGLSENDANEVIAALGGYHIGAEKRTDKAGVSILIDVKDMERSVNILNAAGLPR 83

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 84  QARTNLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAP 142

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            +     +A+V I+        S    IR +VA+++P L 
Sbjct: 143 GEPIQPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 182


>gi|33596836|ref|NP_884479.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33573537|emb|CAE37528.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 274

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSS 106
             L      ++ N +  AL EA I  +      G ++SVP+  V ++   L A GLP   
Sbjct: 33  VELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSLEILRASGLPREQ 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            +    +F K      +   +    + AL  E+A T+  I G+++ARVH+V+P+ G+  +
Sbjct: 93  FDGMGRIFRKE-GLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGE 151

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                TA V ++  +     +    IR LV  A+P L    V+V
Sbjct: 152 PATPSTAGVFLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSV 195


>gi|326315351|ref|YP_004233023.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|89111179|dbj|BAE80268.1| HrcJ [Acidovorax avenae subsp. avenae]
 gi|323372187|gb|ADX44456.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 287

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGKARIHLAAQGLPSSS 106
           L+ +   +D N +  AL E+ ID   + +      ++ V  S V ++   L + GLP   
Sbjct: 35  LFTRQTEADANDMVAALLESGIDAGKATSDAGKTWNVQVEKSDVVRSLAVLRSYGLPRER 94

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
             +  E+F K      T   + +  +  +  ++  T+  I G+V ARV IV+P+      
Sbjct: 95  HATLGEMF-KKEGLISTPTEERVRFIYGVAQQLEATLSQIDGVVTARVQIVLPNNDPLAS 153

Query: 167 IGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
                +A+V I+    +        I+++VA +V  L   +VTV 
Sbjct: 154 TVKPASAAVFIKYRESANIAGLTAGIKNMVARSVEGLTYENVTVT 198


>gi|194292006|ref|YP_002007913.1| sctj: non flagellar t3S system conserved transmembrane lipoprotein.
           yscj/flif family. [Cupriavidus taiwanensis LMG 19424]
 gi|193225910|emb|CAQ71857.1| SctJ: non flagellar T3S system conserved transmembrane lipoprotein.
           yscJ/FliF family [Cupriavidus taiwanensis LMG 19424]
          Length = 262

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI---SDNGSS------ISVPSSMVGKARIHLAAQG 101
           LY  L   + N++  AL+   ID        +G +      + V  S +  A   L ++G
Sbjct: 30  LYASLNEPEANQVLAALTAEGIDAEKARADTSGGTGEGQWRVRVEESQLPAALEILRSEG 89

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  ++F K      T   + +  + AL  E++ T+++I G+V ARVH+V+P  
Sbjct: 90  LPGERFASLGQVFQK-QGLVATPTEERMRYIFALSQELSETLRNIDGVVTARVHVVIPAT 148

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTV 209
                     +A+V I+    +  +     ++ +VA ++  +   +V++
Sbjct: 149 DPLSDKIRPSSAAVFIKHRADTDLRLLVPTVKDMVAHSIEGVTHDNVSL 197


>gi|13475299|ref|NP_106863.1| nodulation protein NOLT [Mesorhizobium loti MAFF303099]
 gi|14026050|dbj|BAB52649.1| nodulation protein; NolT [Mesorhizobium loti MAFF303099]
          Length = 279

 Score =  118 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY +L+  + N +   L +  +        D  S++ V   ++  +   L  +GLP  S 
Sbjct: 28  LYTQLQEREANEMLALLMDNGVHAVRVAAKDGTSTVQVDEKLLAYSIDLLNGKGLPRQSF 87

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+F + +    +   +    V AL  E++RTI  I G+ + RVH+V+P     R  
Sbjct: 88  KNLGEIF-QGSGLIASPTEERARYVYALSEELSRTISDIDGVFSVRVHVVLPHNDLLRAG 146

Query: 168 GARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               +ASV IR    +        I+ LVA ++  L    V V+
Sbjct: 147 ATPSSASVFIRHDAKADLSVLLPKIKMLVADSIEGLSYDKVEVV 190


>gi|292487032|ref|YP_003529902.1| type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           CFBP1430]
 gi|292900583|ref|YP_003539952.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|1336088|gb|AAB49174.1| HrcJ [Erwinia amylovora]
 gi|291200431|emb|CBJ47559.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552449|emb|CBA19494.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           CFBP1430]
          Length = 260

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 4/160 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      +  G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            +     +A+V I+             IR +VA+++P L 
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLA 180


>gi|145284368|gb|ABP51949.1| AscJ [Aeromonas veronii bv. sobria]
          Length = 246

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSS 88
            +M  + A   ++      LY  +   + N +   L    I      +      + V  S
Sbjct: 5   MLMGVLGASLLLSGCK-VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEES 63

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            V +A   L  +G P  S ++  ++F K      +   +      A   EI+ T+  I G
Sbjct: 64  DVAQAIETLKRKGYPKESFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDG 122

Query: 149 IVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206
           ++ ARVH+V+P+            +ASV I+        +    I+ LV  ++  L    
Sbjct: 123 VLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDR 182

Query: 207 VTVL 210
           ++V+
Sbjct: 183 ISVV 186


>gi|145301433|ref|YP_001144272.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|66947987|emb|CAE83124.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856315|gb|ABO92524.1| AscJ protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 242

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSS 88
            +M  + A   +N      LY  +   + N +   L    I      +      + V  S
Sbjct: 1   MLMGVLGASLLLNGCK-VELYTGVTQKEGNEMLALLQTEGIASDKQPDKDGRIKLLVEES 59

Query: 89  MVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISG 148
            V +A   L  +G P  S ++  ++F K      +   +      A   EI+ T+  I G
Sbjct: 60  DVAQAIETLKRKGYPKESFSTLQDVFPKD-GLISSPTEERARLTYAKAQEISNTLSEIDG 118

Query: 149 IVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGD 206
           ++ ARVH+V+P+            +ASV I+        +    I+ LV  ++  L    
Sbjct: 119 VLVARVHVVLPEGNEGISKKPSPASASVFIKHAADIQLDTYIPQIKQLVNNSIEGLAYDR 178

Query: 207 VTVL 210
           ++V+
Sbjct: 179 ISVV 182


>gi|312171103|emb|CBX79362.1| Type III secretion inner-membreane protein HrcJ [Erwinia amylovora
           ATCC BAA-2158]
          Length = 260

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 4/160 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPS 104
               L   L  +D N ++  L   +I      +  G ++ V ++ + +A   L A GLP 
Sbjct: 22  DQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPR 81

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
            +  +  E+F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  + 
Sbjct: 82  PARTNLGEVFQKNGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAP 140

Query: 165 RKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
            +     +A+V I+             IR +VA+++P L 
Sbjct: 141 GEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPGLA 180


>gi|325273533|ref|ZP_08139766.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
 gi|324101334|gb|EGB98947.1| flagellar MS-ring protein [Pseudomonas sp. TJI-51]
          Length = 154

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 58/128 (45%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSE 69
           F ++   +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L+ 
Sbjct: 27  FLENIAQMPMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLSGMDTKQVMDTLAA 86

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
           A+I + +  N  ++ V S  + +AR+ LAA G+  S  N G+EL DK    G + FM+  
Sbjct: 87  ADIPYNVEPNSGALLVKSDDLARARLKLAAAGVAPSDGNVGFELLDKEQGLGTSQFMEAT 146

Query: 130 TRVRALEG 137
              R L G
Sbjct: 147 RYRRRLGG 154


>gi|329901481|ref|ZP_08272819.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549089|gb|EGF33689.1| Type III secretory pathway, lipoprotein EscJ [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 245

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 8/170 (4%)

Query: 48  YDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSS 105
             NL   L+ +D N I   L    I+ +   +  G +++V  + V +A   + A GLP  
Sbjct: 1   MSNLQTNLQDADANEIVALLRHNGIEAKKVTAKEGITLTVHEADVPRATDIMRAAGLPKR 60

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
           S  +   +F K      T   + +  + AL  E+  T+Q    +V+ARVH+V+P+  +  
Sbjct: 61  SLANLGTVF-KKEGMISTPLEERVRYIHALSEELEFTLQQFDHVVSARVHVVLPERIAPG 119

Query: 166 KIGARPTASVMIRAI-NPSVYKSAEAIRHLVAAAVPNLD----MGDVTVL 210
           +     +A+V ++         +   I +LVA+++P L        V+V+
Sbjct: 120 EPIQPSSAAVFVKYTEPFDEDTNIPRITNLVASSIPGLSGIEGRSKVSVV 169


>gi|307131216|ref|YP_003883232.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii
           3937]
 gi|306528745|gb|ADM98675.1| Type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Dickeya dadantii
           3937]
          Length = 236

 Score =  116 bits (291), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L  +D N +  AL   +I         G SI +    + +A   L A GLP  +  
Sbjct: 3   LHRGLSENDANEVIAALGGYHIGAEKRTEKTGVSILIDVKDMERAVNILNAAGLPRQART 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F K      T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 63  NLGQVFQKTGVI-STPLEERARYIYALSQEVESTLTQIDGVLVARVHVVLPERIAPGEPI 121

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLD 203
              +A+V I+        S    IR +VA+++P L 
Sbjct: 122 QPASAAVFIKYRPELEPDSIEPRIRRMVASSIPGLA 157


>gi|319795607|ref|YP_004157247.1| type III secretion apparatus lipoprotein, yscj/hrcj family
           [Variovorax paradoxus EPS]
 gi|315598070|gb|ADU39136.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Variovorax paradoxus EPS]
          Length = 267

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 5/165 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
             ++  L   + N I VAL+   ID    R+      + V  S +G A   L AQGLP+ 
Sbjct: 35  VAIFSNLNEVEANEIVVALAAEGIDASKTRLEGTNWQVDVEESRMGTALEILRAQGLPAE 94

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              S  ++F K      T   + +  + A+  E+A+T++++ G+VAARVH+V+P      
Sbjct: 95  RYASMGDVFQK-QGLVSTPSEERMRYIYAVSQELAQTLRTVDGVVAARVHVVIPANDPLS 153

Query: 166 KIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209
                 +A+V I+       +    A++ +VA ++  L    V++
Sbjct: 154 DKLRPSSAAVFIKHRPDVDIRLLSSALKDMVAHSIEGLSHEQVSL 198


>gi|91782699|ref|YP_557905.1| secretory protein YscJ/FliF [Burkholderia xenovorans LB400]
 gi|91686653|gb|ABE29853.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia xenovorans LB400]
          Length = 281

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +L+  L+    NRI  ALS   I+ ++    D   +I+V  +    A    +A  LP  
Sbjct: 19  TSLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDADAVVATELASAYALPRG 78

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              +  +LF        +     +  V  L  E++ T++ + G++ ARVHIV+P+     
Sbjct: 79  GHANLGDLF-SRQGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMD 137

Query: 166 KIGAR-PTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
                 P+ASVM+R  +    +     IR LVA  V  L    V++ 
Sbjct: 138 STQDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184


>gi|238752365|ref|ZP_04613843.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei
           ATCC 43380]
 gi|238709406|gb|EEQ01646.1| Type III secretion system apparatus lipoprotein [Yersinia rohdei
           ATCC 43380]
          Length = 236

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 7/206 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSMV 90
           M  +     ++      LY  L   + N++   L    I        G ++  SV  S  
Sbjct: 1   MALLLLVISLSGCGMA-LYSGLSEEEANQMLALLMLHQIKAEKQAEKGGTVGLSVDKSQF 59

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ELF        +   ++   V   E ++   +  + G++
Sbjct: 60  INAVELLRQNGFPRQKFATVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVI 118

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A V I MP      K      ASV I+        S +  I++L+   +P ++   ++V
Sbjct: 119 RANVSIAMPAPT-DGKNSVPNAASVFIKYSPEVNLLSYQTQIKNLIHDGIPGINYSQISV 177

Query: 210 LDSTGKLLTANEMERNILGKSLSIVQ 235
           +  +     +            S+  
Sbjct: 178 VMQSANFRFSATTATTQSRSQASVQW 203


>gi|328468926|gb|EGF39886.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           10329]
          Length = 248

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMV 90
            L +    F+       LY  +   + N +   L    +      +  +   + V SS +
Sbjct: 8   ALCLVLALFLVGCQ-TELYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLMVDSSQI 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L  +G P    ++  E+F K +    +   +    V A   E++ T+  I G++
Sbjct: 67  AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 125

Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+   ++
Sbjct: 126 VARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRIS 185

Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           V+            E  +  +S      +  ++       L   L
Sbjct: 186 VV-------MVPSSEVRVTTQSNQFKSILSVQVTKETANHLIGIL 223


>gi|167842284|ref|ZP_02468968.1| type III secretion system apparatus lipoprotein [Burkholderia
           thailandensis MSMB43]
          Length = 247

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 16/198 (8%)

Query: 17  LGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR- 75
           +   R   L   +L   +                LY  L  ++ N++   L   +ID   
Sbjct: 1   MSARRTHWLGVGLLACALAGC----------KTELYSNLPEAEANQMLALLMLRHIDADK 50

Query: 76  --ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
             I D   +I V       A   L   GLP+    +  E+F        +   ++     
Sbjct: 51  KVIKDGNVTIRVEPGQFVNAVELLRQNGLPARKLATMEEMFPSGQ-LVTSPAQEQAKIQF 109

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIR 192
             E ++ + ++++ G++ A+V +        R+    P+A+V ++      + +    IR
Sbjct: 110 LKEQQLEKMLRAMDGVINAQVSVAEGAAQ-DRRDPEPPSAAVFVKYSPEYNFAARVPEIR 168

Query: 193 HLVAAAVPNLDMGDVTVL 210
            LV + VPNL    V+V+
Sbjct: 169 SLVVSGVPNLSPERVSVV 186


>gi|212702675|ref|ZP_03310803.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098]
 gi|212673947|gb|EEB34430.1| hypothetical protein DESPIG_00703 [Desulfovibrio piger ATCC 29098]
          Length = 260

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 5/163 (3%)

Query: 52  YVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           Y  L     N++   L    I+        NG ++ V    + +A   L    LP  +  
Sbjct: 20  YSGLSEDQANQMLSTLLRRGIEAEKQAAGKNGYTLLVDDDQLVRALQVLKENSLPREAFK 79

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F        TS +Q      AL  E+A T+  I G++ ARVH+V+        I 
Sbjct: 80  NLGEVFAGDGMISSTSEVQ-ARMSYALSQELADTLSRIDGVLTARVHVVLGVNDKVNNIT 138

Query: 169 ARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210
             P+A+V +R    S        IR LVA AV +L   +V+V+
Sbjct: 139 IAPSAAVFLRHTLDSPVVNLVPEIRELVAGAVASLKYDNVSVM 181


>gi|15835462|ref|NP_297221.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
 gi|270285642|ref|ZP_06195036.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
 gi|270289651|ref|ZP_06195953.1| type III secretion protein SctJ [Chlamydia muridarum Weiss]
 gi|301337038|ref|ZP_07225240.1| type III secretion protein SctJ [Chlamydia muridarum MopnTet14]
 gi|7190875|gb|AAF39646.1| type III secretion protein SctJ [Chlamydia muridarum Nigg]
          Length = 328

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 80/216 (37%), Gaps = 21/216 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRI------------SDNG 80
           + F+ A F  ++    ++    L   + N I V L    +  +             S+  
Sbjct: 10  LFFIFALFCCSACDSRSMIAHGLTGREANEIVVLLVSKGVSAQKVPQVAGSSGGGSSEQL 69

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A
Sbjct: 70  WDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197
            TI+ + GIV A V I         +     TASV I+        +      I+ LVA+
Sbjct: 129 TTIRKMDGIVDASVQISFSPE----EDQLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 184

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           AVP L   +V+V+                L   +  
Sbjct: 185 AVPGLCPENVSVVSDRASYSDITINGPWGLSDEIDY 220


>gi|296162486|ref|ZP_06845277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. Ch1-1]
 gi|295887299|gb|EFG67126.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia sp. Ch1-1]
          Length = 281

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANID-FRIS--DNGSSISVPSSMVGKARIHLAAQGLPSS 105
            +L+  L+    NRI  ALS   I+ ++    D   +I+V       A    +A  LP  
Sbjct: 19  TSLFEGLDEDQANRIVAALSHHGINGYKERNPDRTWNITVDDEDAVIATELASAYALPRG 78

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              +  +LF        +     +  V  L  E++ T++ + G++ ARVHIV+P+     
Sbjct: 79  GHANLGDLF-SRQGLISSPEEDRVRYVYGLSQELSETLEKMDGVLLARVHIVLPEKDPMD 137

Query: 166 KIGAR-PTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
                 P+ASVM+R  +    +     IR LVA  V  L    V++ 
Sbjct: 138 PAQDTLPSASVMMRYRSDYNLEPMRDRIRALVAGGVEGLTPARVSLT 184


>gi|282891204|ref|ZP_06299707.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
 gi|281498897|gb|EFB41213.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
          Length = 321

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 19/209 (9%)

Query: 25  LASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF------RISD 78
           + S ++  + L   A    +      +   L+  + N I V LS   ID         + 
Sbjct: 6   ILSKLVGTVFLLCMAFLLTSCESRKTIVNGLDEKEANEIVVFLSSKGIDAMKVQSTEGAG 65

Query: 79  NGSS------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRV 132
            G S      ISV +    +A   L   GLP     S   +F  V     +   + I   
Sbjct: 66  GGGSKIVLWDISVSADKATQAMSILNQSGLPRRKPQSLLGIFSNV-GLVPSELQERIRYQ 124

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSF---RKIGARPTASVMIRAINPSVYKS-- 187
             L  +IA TI+ I G++ A V I  P+        +   +  ASV ++        +  
Sbjct: 125 AGLAEQIASTIRKIDGVLDAEVQISFPEEDPLNPTGEKKGKIVASVYVKHSGVLDDPNSH 184

Query: 188 -AEAIRHLVAAAVPNLDMGDVTVLDSTGK 215
               I+ LVAA+V  LD  +VTV+    +
Sbjct: 185 LVTKIKRLVAASVTGLDYDNVTVIGDRAR 213


>gi|28898464|ref|NP_798069.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260365094|ref|ZP_05777665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus K5030]
 gi|260879510|ref|ZP_05891865.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895015|ref|ZP_05903511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus Peru-466]
 gi|28806682|dbj|BAC59953.1| putative type III secretion lipoprotein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085933|gb|EFO35628.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093438|gb|EFO43133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AN-5034]
 gi|308111628|gb|EFO49168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus K5030]
          Length = 248

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 16/226 (7%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSM 89
           + L +A            LY  +   + N +   L    +      +  +   + V SS 
Sbjct: 9   LCLVLALFLVGCQTE---LYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLMVDSSQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           +  A   L  +G P    ++  E+F K +    +   +    V A   E++ T+  I G+
Sbjct: 66  IAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           + ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+   +
Sbjct: 125 LVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRI 184

Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           +V+            E  +  +S      +  ++       L   L
Sbjct: 185 SVV-------MVPSSEVRVATQSNQFKSILSVQVTKETANHLIGIL 223


>gi|153836290|ref|ZP_01988957.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ3810]
 gi|149750565|gb|EDM61310.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ3810]
          Length = 248

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 16/226 (7%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSM 89
           + L +A            LY  +   + N +   L    +      +  +   + V SS 
Sbjct: 9   LCLVLALFLVGCQTE---LYTNVSQKEGNEMLSILLSEGVVATKEPDKDNKVKLMVDSSQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           +  A   L  +G P    ++  E+F K +    +   +    V A   E++ T+  I G+
Sbjct: 66  IAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDV 207
           + ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+   +
Sbjct: 125 LVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNYDRI 184

Query: 208 TVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           +V+            E  +  +S      +  ++       L   L
Sbjct: 185 SVV-------MVPSSEVRVTTQSNQFKSILSVQVTKETANHLIGIL 223


>gi|84502358|ref|ZP_01000494.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597]
 gi|84389170|gb|EAQ01967.1| flagellar M-ring protein [Oceanicola batsensis HTCC2597]
          Length = 246

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 22/244 (9%)

Query: 331 KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
           K +E  NYEI      T  +  +++R+S+AV+VN     +  G  A + + +  L  +N+
Sbjct: 1   KTDEVVNYEIGNTQSETVREPGEIQRISVAVLVNGIYNIQDNGEVAYEERSEEELQRLNQ 60

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V AA G + +RGD++++ S+ F++  +     V  SF+ IL  +   ++ A+  L    
Sbjct: 61  LVQAAIGFDEQRGDSVSVDSLRFMDYSMDVGEPVSTSFVQILKDNMMAILRAVFALAVIA 120

Query: 451 LVTFLGLHALR-RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
            +   G+  L  R        + +    ++      +              L +  Q   
Sbjct: 121 AILVFGVRPLVARALPERTEGEDQSDVPALPGGEAQAEGELAADGDRAPQGLPAPQQARP 180

Query: 510 ---------------------SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                                         +N  V K     +  ++E   +   K+++ 
Sbjct: 181 RRAGSGGAVSGTVLEPISMAGPDDLVTLGAVNGGVHKGWINTVSGLVEHQPDDSLKVVKT 240

Query: 549 WARS 552
           W   
Sbjct: 241 WLAE 244


>gi|238918870|ref|YP_002932384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family,
           [Edwardsiella ictaluri 93-146]
 gi|84663079|gb|ABC60061.1| EsaJ [Edwardsiella ictaluri 93-146]
 gi|238868438|gb|ACR68149.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family,
           putative [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  115 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY KL+  + N++   L    I    R+  +G ++ V       A   L   GLP   + 
Sbjct: 23  LYSKLDEKEANQMMALLIYNKIPADKRMEKDGVTLLVDQDRFVDAVEVLRQNGLPRPQTV 82

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ELF        +   +E         +I + + S+ G++ A V +  P      +  
Sbjct: 83  TMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLSSMDGVINAEVSVAEP-RAIVGEAP 140

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
              +A+V I+        + EA IR L+   +P L    ++V 
Sbjct: 141 PLASAAVFIKYSPDVNLPAREAEIRALINNGIPGLAPDRISVT 183


>gi|269138213|ref|YP_003294913.1| putative type III secretion system apparatus lipoprotein
           [Edwardsiella tarda EIB202]
 gi|61743038|gb|AAX55258.1| EsaJ [Edwardsiella tarda]
 gi|62199640|gb|AAX76915.1| EsaJ [Edwardsiella tarda]
 gi|267983873|gb|ACY83702.1| putative type III secretion system apparatus lipoprotein
           [Edwardsiella tarda EIB202]
 gi|304558256|gb|ADM40920.1| EsaJ [Edwardsiella tarda FL6-60]
          Length = 243

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 5/163 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY KL+  + N++   L   NI    R+   G ++ V       A   L   GLP   + 
Sbjct: 23  LYSKLDEKEANQMMALLIYNNIPADKRVEKEGVTLLVERERFVDAVEVLRQNGLPRRKTV 82

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ELF        +   +E         +I + + S+ G++ A V +  P      +  
Sbjct: 83  TMQELFPSGQ-LVTSPEQEEAKLNYLKSQQIEKMLGSMDGVINAEVSVAEP-RVIVGEAP 140

Query: 169 ARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
            + +A+V I+        + EA IR L+   +P L    ++V 
Sbjct: 141 PQASAAVFIKYSPEINLPAREAEIRALIHNGIPGLAPDRISVT 183


>gi|153003620|ref|YP_001377945.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027193|gb|ABS24961.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 239

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 10/184 (5%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS-----ISVPSSMV 90
            +     ++    + L   L+ +  N + VAL E  +         S     ++V +   
Sbjct: 7   LLVLATALSGCAEEELLHGLDEAQANEVLVALDEGGLPATKRREEGSDGQWMVAVGAHDA 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   LA + LP +      E+F K  S   T   +    + AL GE++R+++SI G+V
Sbjct: 67  ARAHRVLAERELPRARPPGFGEVFGK-GSMVPTPTEEHALYLHALAGELSRSVESIDGVV 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE----AIRHLVAAAVPNLDMGD 206
            ARVH+ +P     R          ++    P+   +       IR LVA A   L+ G 
Sbjct: 126 EARVHLGLPQPDPLRPGDVPAPRGAVLVKCRPAACDAVRALEAGIRALVAGAAGGLEPGA 185

Query: 207 VTVL 210
           ++V+
Sbjct: 186 ISVV 189


>gi|91224456|ref|ZP_01259718.1| putative type III secretion lipoprotein [Vibrio alginolyticus
           12G01]
 gi|91190798|gb|EAS77065.1| putative type III secretion lipoprotein [Vibrio alginolyticus
           12G01]
 gi|262284512|gb|ACY41049.1| VscJ [Vibrio alginolyticus]
          Length = 247

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 14/225 (6%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
            +F+    F+       LY  +   + N +   L    +      +      + V SS +
Sbjct: 7   AVFIMLTLFLVGCQ-TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L  +G P    ++  E+F K +    +   +    V A   E++ T+  I G++
Sbjct: 66  AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124

Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+   ++
Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184

Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           V+            E  +  ++      +  ++       L A L
Sbjct: 185 VV-------MVPSSEVRVATQNNQFKSILSVQVTKETANNLIAIL 222


>gi|254228230|ref|ZP_04921659.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           sp. Ex25]
 gi|262394115|ref|YP_003285969.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25]
 gi|151939303|gb|EDN58132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           sp. Ex25]
 gi|262337709|gb|ACY51504.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Vibrio sp. Ex25]
          Length = 247

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 7/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
            +F+    F+       LY  +   + N +   L    +      +      + V SS +
Sbjct: 7   AVFIMLTLFLVGCQ-TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQI 65

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L  +G P    ++  E+F K +    +   +    V A   E++ T+  I G++
Sbjct: 66  AFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVL 124

Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+   ++
Sbjct: 125 VARVHVVLEDQDLRPGERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRIS 184

Query: 209 VL 210
           V+
Sbjct: 185 VV 186


>gi|110632466|ref|YP_672674.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Mesorhizobium sp. BNC1]
 gi|110283450|gb|ABG61509.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Chelativorans sp. BNC1]
          Length = 266

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 6/181 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVP 86
           L  ++L  A   F+++     LY  L   + N +   L E +ID     +     ++ V 
Sbjct: 19  LGAVLLAFALCAFLSACK-VPLYSGLSEQEANDMLGKLLEYDIDATKQADKDNYITLLVD 77

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
            +  G+A   L + GLP     +  ++F   +    +   +      AL  E+++ + SI
Sbjct: 78  EAQFGQAVDLLKSFGLPRPQFETIGKVF-TGDGLVTSPVKEWARLNFALSQELSKMVSSI 136

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVM-IRAINPSVYKSAEAIRHLVAAAVPNLDMG 205
            G+V A V I  P   +       P+ASV+ I   +    +    IR LVA ++ N+   
Sbjct: 137 PGVVLAEVQIANPRKTTPFDEVPPPSASVLAIVNRSAVTAELVPRIRQLVAHSIENVQYE 196

Query: 206 D 206
            
Sbjct: 197 K 197


>gi|296103639|ref|YP_003613785.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058098|gb|ADF62836.1| flagellar M-ring protein FliF [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 268

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 93/291 (31%), Gaps = 46/291 (15%)

Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV---------------------PL 322
           +    R +  +++  +           N P                              
Sbjct: 1   MAIRSRQASLSEQGNSRGASGVPGALSNTPPAPATAPLTQPLNTPADDKKEKTTSNSANR 60

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
             +    ++ +E +N+E++   I T  +  +++RLS+AVV+N     E           +
Sbjct: 61  EPAQPYNNRSDETTNFEVDRTLIHTKSNAGRIQRLSVAVVINHLPQGEE---GKPGPISE 117

Query: 383 SYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINA 442
           + L  IN +V  A G N+ RGD++ I +  F    +           D   R +A ++  
Sbjct: 118 AELTRINALVKEAIGFNASRGDSVNILNSAFNG--VVEEPVPPFWEQD---RFYALLMAI 172

Query: 443 LVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALD 502
             +LV  ++   +    ++                         + +    M  +    +
Sbjct: 173 ARYLVIAIIAWVMWRKLVQPAWIRH-----------------QETTLRRLEMEKEAREEE 215

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            + +   +   N         ++ +  +L  + E      A ++R+W   E
Sbjct: 216 IAAKKRAAEKINRDRAQQRVDTELNGQQLRELAEQEPRVIALVIRQWMSKE 266


>gi|16082747|ref|NP_395193.1| needle complex inner membrane lipoprotein [Yersinia pestis CO92]
 gi|31795324|ref|NP_857723.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM]
 gi|31795467|ref|NP_857918.1| needle complex inner membrane lipoprotein [Yersinia pestis KIM]
 gi|45478525|ref|NP_995352.1| putative type III secretion lipoprotein YscJ [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51593928|ref|YP_068495.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108793648|ref|YP_636797.1| type III secretion lipoprotein [Yersinia pestis Antiqua]
 gi|145597125|ref|YP_001154589.1| type III secretion lipoprotein [Yersinia pestis Pestoides F]
 gi|149192680|ref|YP_001293912.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125]
 gi|162417757|ref|YP_001604492.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           Angola]
 gi|165927768|ref|ZP_02223600.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165940079|ref|ZP_02228613.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011735|ref|ZP_02232633.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214472|ref|ZP_02240507.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401937|ref|ZP_02307423.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167422389|ref|ZP_02314142.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167422456|ref|ZP_02314209.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167422890|ref|ZP_02314643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426845|ref|ZP_02318598.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186897504|ref|YP_001874615.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis PB1/+]
 gi|229896875|ref|ZP_04512035.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides
           A]
 gi|229900230|ref|ZP_04515366.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|270491089|ref|ZP_06208161.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|294496851|ref|YP_003560548.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003]
 gi|322836586|ref|YP_004210082.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java
           9]
 gi|57015226|sp|P69972|YSCJ_YERPE RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; AltName: Full=Low calcium
           response locus protein KA; Flags: Precursor
 gi|57015227|sp|P69973|YSCJ_YERPS RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; AltName: Full=Low calcium
           response locus protein KA; Flags: Precursor
 gi|155466|gb|AAA27651.1| lcrKa [Yersinia pseudotuberculosis]
 gi|2996284|gb|AAC62607.1| Yop proteins translocation lipoprotein J [Yersinia pestis KIM 10]
 gi|3822055|gb|AAC69775.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832479|emb|CAB54936.1| putative type III secretion lipoprotein [Yersinia pestis CO92]
 gi|45357147|gb|AAS58543.1| putative type III secretion lipoprotein YscJ [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51591625|emb|CAF25429.1| yscJ, ylpB; putative type III secretion lipoprotein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782195|gb|ABG16250.1| type III secretion lipoprotein [Yersinia pestis Antiqua]
 gi|145212893|gb|ABP42299.1| type III secretion lipoprotein [Yersinia pestis Pestoides F]
 gi|148872338|gb|ABR14828.1| putative type III secretion lipoprotein [Yersinia pestis CA88-4125]
 gi|162354777|gb|ABX88724.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           Angola]
 gi|165911989|gb|EDR30632.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165920204|gb|EDR37505.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989342|gb|EDR41643.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204365|gb|EDR48845.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958180|gb|EDR55201.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|166958626|gb|EDR55647.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|166958693|gb|EDR55714.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048665|gb|EDR60073.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054144|gb|EDR63971.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186700530|gb|ACC91158.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229686750|gb|EEO78830.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700146|gb|EEO88185.1| putative type III secretion lipoprotein [Yersinia pestis Pestoides
           A]
 gi|262363863|gb|ACY60583.1| needle complex inner membrane lipoprotein [Yersinia pestis D106004]
 gi|262364019|gb|ACY64356.1| needle complex inner membrane lipoprotein [Yersinia pestis D182038]
 gi|270334832|gb|EFA45611.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|294352439|gb|ADE66496.1| needle complex inner membrane lipoprotein [Yersinia pestis Z176003]
 gi|317374463|gb|ADV16638.1| type III secretion bridge between inner and outermembrane
           lipoprotein [Yersinia pestis]
 gi|320017494|gb|ADW01065.1| putative type III secretion lipoprotein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
 gi|321161360|gb|ADW67066.1| type III secretion apparatus lipoprotein YscJ [Yersinia pestis Java
           9]
          Length = 244

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKA 93
           +    F+      +LY  +   + N +   L +  +      +      + V  S V +A
Sbjct: 10  LILILFLTGCK-VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              L  +G P  S ++  ++F K      +   +      A   EI+RT+  I G++ AR
Sbjct: 69  IDILKRKGYPHESFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
           VH+V+P +  +  K G   +ASV I+      + +    I+ LV  ++  L    ++V+
Sbjct: 128 VHVVLPEEQNNKGKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186


>gi|118592619|ref|ZP_01550009.1| Type III secretion component protein SctJ [Stappia aggregata IAM
           12614]
 gi|118434670|gb|EAV41321.1| Type III secretion component protein SctJ [Stappia aggregata IAM
           12614]
          Length = 239

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 5/160 (3%)

Query: 55  LEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGY 111
           +   D N +   L    I        D+G S+ V  + +  A   L+  G P +   S  
Sbjct: 1   MSEQDANGMLSVLMANGISVEKRYDGDDGVSLLVDEADLAPAIGILSENGFPRTERESIG 60

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
            +F K +    + F + +  + AL  E++ T+  I G++ ARVH+V+P+     ++    
Sbjct: 61  SVFQK-SGIMSSPFEERVRYIHALGEEVSGTLNEIDGVLMARVHVVLPEKPELGEVIVPS 119

Query: 172 TASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
           +A+V I+             IR LV+ ++  ++   VTV+
Sbjct: 120 SAAVFIKHSKNVDLDFITPQIRRLVSNSIQGVEYDSVTVV 159


>gi|304311662|ref|YP_003811260.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797395|emb|CBL45615.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 244

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 7/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS--ISVPSSM 89
           +  +     +++     LY +LE   VN +   L    I    ++S +G +  + VP + 
Sbjct: 8   VALVVCFLLLSACGGSELYSELEEHQVNEMQALLINVGIPAEKKLSSDGKAWRLLVPKAY 67

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + ++   L+  GLP  +  S  ++F K   F  +   +    V A+  E++ TI  + G+
Sbjct: 68  IPESMTLLSEHGLPRQTLPSIADVF-KKEGFVSSPVEEHARYVYAISQELSNTIMQLDGV 126

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLD-MGDV 207
            +ARVH  +P   +  K     + SV+I           E  I+ +    +  L  +  V
Sbjct: 127 ASARVHAALPARAALEKKQQSASVSVVIIEKPGFDLSKFETDIKAIATDGIEGLSDINRV 186

Query: 208 TV 209
           TV
Sbjct: 187 TV 188


>gi|269963158|ref|ZP_06177493.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832122|gb|EEZ86246.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 247

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 70/186 (37%), Gaps = 11/186 (5%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVP 86
              ++L +             LY  +   + N +   L    +      +      + V 
Sbjct: 7   AACMLLVLFLV-----GCQTELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVD 61

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           ++ +  A   L  +G P    ++  E+F K +    +   +    + A   E++ T+  I
Sbjct: 62  NAQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQI 120

Query: 147 SGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
            G++ ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+ 
Sbjct: 121 DGVLVARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNY 180

Query: 205 GDVTVL 210
             ++V+
Sbjct: 181 DRISVV 186


>gi|83647792|ref|YP_436227.1| type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
 gi|83635835|gb|ABC31802.1| Type III secretory pathway, lipoprotein EscJ [Hahella chejuensis
           KCTC 2396]
          Length = 251

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS------DNGSSISVPSSMVGKARIHLAAQGL 102
             LY  L   + N +   L     +  +       D    + +P   V +A   L  QG 
Sbjct: 23  TELYSGLSQQEGNEMYAILRSTGFNVEMEVLGAGKDQNVRLKLPEQQVARAISVLQRQGY 82

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P     +  E+F K      +   ++   + A+  E++ T+ +I G++ ARVH+VM +  
Sbjct: 83  PKQHFATMGEIFAKD-GLISSPTEEKARFIYAISQELSHTLSNIDGVLVARVHVVMQEGD 141

Query: 163 SFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209
            F K     TASV I+ +  +  ++    I+ LV+ ++  LD   V+V
Sbjct: 142 KFDKNPKPSTASVFIKYVEDAPIETLTPKIKALVSNSILGLDYDQVSV 189


>gi|163802017|ref|ZP_02195913.1| putative type III secretion lipoprotein [Vibrio sp. AND4]
 gi|159174158|gb|EDP58966.1| putative type III secretion lipoprotein [Vibrio sp. AND4]
          Length = 247

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
            L M    F+       LY  ++  + N +   L    +      +      + V ++ +
Sbjct: 7   ALGMLLVVFLVGCQ-TELYTGVDQQEGNEMLSILLSEGVVATKEPDKDNTVKLLVDNAQI 65

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P    ++  E+F K +    +   +    + A   E++ T+  I G++
Sbjct: 66  AFAVDALKRNGYPKEQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQIDGVL 124

Query: 151 AARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+V+ D            +ASV I+        +    I+ LV  ++  L+   ++
Sbjct: 125 VARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDAYVPQIKLLVNHSIEGLNYDRIS 184

Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           V+            E  I  +       +  ++  +    L A L
Sbjct: 185 VV-------MVPSSEARITSQGSQFESILSIQVTKDTASHLIAIL 222


>gi|238787467|ref|ZP_04631265.1| Type III secretion system apparatus lipoprotein [Yersinia
           frederiksenii ATCC 33641]
 gi|238724254|gb|EEQ15896.1| Type III secretion system apparatus lipoprotein [Yersinia
           frederiksenii ATCC 33641]
          Length = 240

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 7/182 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSM 89
           ++  +   F ++      LY  L   + N++   L    I        G ++  SV  S 
Sbjct: 4   MIALLLIVFSLSGCG-IALYSGLSEGEANQMLALLMLHQIKAEKQPEKGGTVGLSVDKSQ 62

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     S  ELF        +   ++   V   E ++   +  + G+
Sbjct: 63  FINAVELLRQHGFPRQRFTSVDELFPPNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 121

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208
           + A V I MP      K      ASV I+        S ++ I++L+   +P +D   ++
Sbjct: 122 IRADVTIAMPAPT-DGKSSVPHAASVFIKYSPEVNLLSYQSQIKNLIRDGIPGIDYSQIS 180

Query: 209 VL 210
           V+
Sbjct: 181 VV 182


>gi|10955579|ref|NP_052420.1| hypothetical protein pYVe227_p43 [Yersinia enterocolitica]
 gi|28373017|ref|NP_783695.1| hypothetical protein pYVa12790_p42 [Yersinia enterocolitica]
 gi|32470307|ref|NP_863542.1| hypothetical protein pYVe8081_p37 [Yersinia enterocolitica]
 gi|122815831|ref|YP_001004097.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163601|ref|YP_004424943.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|267571|sp|Q01251|YSCJ_YEREN RecName: Full=Yop proteins translocation lipoprotein J; AltName:
           Full=Lipoprotein ylpB; Flags: Precursor
 gi|14579365|gb|AAK69242.1|AF336309_37 YscJ [Yersinia enterocolitica]
 gi|155559|gb|AAC37027.1| yscJ [Yersinia enterocolitica]
 gi|4324366|gb|AAD16843.1| YscJ [Yersinia enterocolitica W22703]
 gi|28302112|gb|AAN37545.2| YscJ [Yersinia enterocolitica]
 gi|121663705|emb|CAL10067.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|325667831|gb|ADZ44474.1| type III secretion lipoprotein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 244

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKA 93
           +    F+      +LY  +   + N +   L +  +      +      + V  S V +A
Sbjct: 10  LILILFLTGCK-VDLYTGISQKEGNEMLALLRQEGLSADKEPDKDGKIKLLVEESDVAQA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              L  +G P  S ++  ++F K      +   +      A   EI+RT+  I G++ AR
Sbjct: 69  IDILKRKGYPHESFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
           VH+V+P +  +  K G   +ASV I+      + +    I+ LV  ++  L    ++V+
Sbjct: 128 VHVVLPEEQNNKGKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 186


>gi|238793326|ref|ZP_04636952.1| Type III secretion system apparatus lipoprotein [Yersinia
           intermedia ATCC 29909]
 gi|238727295|gb|EEQ18823.1| Type III secretion system apparatus lipoprotein [Yersinia
           intermedia ATCC 29909]
          Length = 233

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 66/202 (32%), Gaps = 7/202 (3%)

Query: 38  AARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN-GSSI--SVPSSMVGKAR 94
                ++    + LY  L   + N++   L    I        G ++  SV  S    A 
Sbjct: 2   LVVVSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVGLSVDKSQFINAV 60

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
             L   G P     +   LF        +   ++   V   E ++   +  + G++ A V
Sbjct: 61  ELLRQNGFPRQKFTTVDTLFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIHADV 119

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVLDST 213
            I MP      K      ASV I+       +S    I++L+   +P +D   ++V+   
Sbjct: 120 TIAMPAPT-DGKSSVPHAASVFIKYSPEVNLQSYQPQIKNLIRDGIPGIDYSQISVVMQP 178

Query: 214 GKLLTANEMERNILGKSLSIVQ 235
                            LS+  
Sbjct: 179 ANYRFIAAEPHEHAEAQLSLQW 200


>gi|312912394|dbj|BAJ36368.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
          Length = 249

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|695778|emb|CAA55109.1| lcrKa [Yersinia pestis]
          Length = 236

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 7/179 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKA 93
           +    F+      +LY  +   + N +   L +  +      +      + V  S V +A
Sbjct: 2   LILILFLTGCK-VDLYTGISQKEGNEMLALLPQEGLSADKEPDKDGKIKLLVEESDVAQA 60

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              L  +G P  S ++  ++F K      +   +      A   EI+RT+  I G++ AR
Sbjct: 61  IDILKRKGYPHESFSTLQDVFPKD-GLISSPIEELARLNYAKAQEISRTLSEIDGVLVAR 119

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
           VH+V+P +  +  K G   +ASV I+      + +    I+ LV  ++  L    ++V+
Sbjct: 120 VHVVLPEEQNNKGKKGVAASASVFIKHAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 178


>gi|46445839|ref|YP_007204.1| putative type III secretion protein SctJ [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399480|emb|CAF22929.1| putative type III secretion protein SctJ [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 337

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 17/201 (8%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR----ISDNGS------ 81
             +L        +      +   LE  + N I V LS   I+      +S+ G       
Sbjct: 19  FFLLITLMGLVTSCESRRVIVNGLEEKEANEILVFLSNKGINANKVQAVSEGGGGAKGVL 78

Query: 82  -SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
            +ISV      +A   L   GLP     +   +F   +    +   ++I     L  +IA
Sbjct: 79  WNISVEEGQANEAMALLNQVGLPRRRGQNLLGIFANTS-LVPSGMQEKIRYQAGLAEQIA 137

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKI--GARPTASVMIRAINPSVYKS---AEAIRHLV 195
            TI+ I G++ A V I  PD           + TASV ++        +      I+ LV
Sbjct: 138 STIRKIDGVLDADVQISFPDEDPLNPNAPKQKITASVYVKHNGVLDDPNAHLITRIKRLV 197

Query: 196 AAAVPNLDMGDVTVLDSTGKL 216
           A ++  LD   VTV+    + 
Sbjct: 198 AGSINGLDYDYVTVIGDKARY 218


>gi|167589321|ref|ZP_02381709.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ubonensis Bu]
          Length = 264

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISD--------NGSSISVPSSMVGKARIHLAAQGL 102
           LY  L  +D N++   L +A ID    +        +   +SV    +  A   L A GL
Sbjct: 36  LYSGLSEADANQMIAVLGDAGIDASKDNDARDTSDRDAWQVSVADGDLHAALTVLRANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P     S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+  
Sbjct: 96  PKPRHASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIRPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|45440272|ref|NP_991811.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108810010|ref|YP_653926.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Antiqua]
 gi|108813566|ref|YP_649333.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|145600955|ref|YP_001165031.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides F]
 gi|150260689|ref|ZP_01917417.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CA88-4125]
 gi|162418417|ref|YP_001608235.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pestis Angola]
 gi|165926703|ref|ZP_02222535.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936453|ref|ZP_02225021.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010454|ref|ZP_02231352.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213895|ref|ZP_02239930.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402484|ref|ZP_02307939.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419313|ref|ZP_02311066.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167469434|ref|ZP_02334138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis FV-1]
 gi|218927469|ref|YP_002345344.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CO92]
 gi|229836517|ref|ZP_04456683.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides A]
 gi|229840125|ref|ZP_04460284.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842206|ref|ZP_04462361.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904054|ref|ZP_04519167.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|294502335|ref|YP_003566397.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Z176003]
 gi|45435128|gb|AAS60688.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108777214|gb|ABG19733.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|108781923|gb|ABG15981.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Antiqua]
 gi|115346080|emb|CAL18948.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CO92]
 gi|145212651|gb|ABP42058.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides F]
 gi|149290097|gb|EDM40174.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           CA88-4125]
 gi|162351232|gb|ABX85180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis Angola]
 gi|165915569|gb|EDR34178.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921326|gb|EDR38550.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990544|gb|EDR42845.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204870|gb|EDR49350.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963307|gb|EDR59328.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048134|gb|EDR59542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|229679824|gb|EEO75927.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Nepal516]
 gi|229690516|gb|EEO82570.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696491|gb|EEO86538.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706201|gb|EEO92209.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Pestoides A]
 gi|262360415|gb|ACY57136.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           D106004]
 gi|262364365|gb|ACY60922.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           D182038]
 gi|294352794|gb|ADE63135.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           Z176003]
 gi|320013873|gb|ADV97444.1| type III secretion system apparatus lipoprotein [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 243

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 13/240 (5%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89
           ++  +     ++    + LY  L   + N++   L    I+   +I  +G   ++V    
Sbjct: 7   MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     +  ELF        +   ++   V   E ++   +  + G+
Sbjct: 66  FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208
           + A V + MP M    K     TASV I+       +S ++ I+ LV  AVP +D   ++
Sbjct: 125 IHADVTVAMP-MSVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183

Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           V+      +       +              +  +     +   +GV      V+  +  
Sbjct: 184 VV------MQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGW 237


>gi|322615106|gb|EFY12029.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619948|gb|EFY16821.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622259|gb|EFY19104.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627781|gb|EFY24571.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322636635|gb|EFY33338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641172|gb|EFY37814.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322644893|gb|EFY41426.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322655844|gb|EFY52146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660169|gb|EFY56408.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665264|gb|EFY61452.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669521|gb|EFY65669.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673447|gb|EFY69549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677375|gb|EFY73439.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679962|gb|EFY76001.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687434|gb|EFY83406.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323194114|gb|EFZ79313.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198594|gb|EFZ83695.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323202920|gb|EFZ87955.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208640|gb|EFZ93578.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323217618|gb|EGA02333.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323218966|gb|EGA03476.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323229419|gb|EGA13542.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323232642|gb|EGA16738.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240320|gb|EGA24364.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242691|gb|EGA26712.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323245903|gb|EGA29891.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252467|gb|EGA36314.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255110|gb|EGA38894.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260049|gb|EGA43674.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267187|gb|EGA50672.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271490|gb|EGA54911.1| type III secretion system lipoprotein SsaJ [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 249

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|94986985|ref|YP_594918.1| LscJ [Lawsonia intracellularis PHE/MN1-00]
 gi|94731234|emb|CAJ54597.1| LscJ [Lawsonia intracellularis PHE/MN1-00]
          Length = 290

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107
           +Y  L    VN +   L    ID   S  G    S+ V    +  A   L    LP  + 
Sbjct: 45  VYKGLTEDQVNEMVATLIYRGIDVEKSPGGKEGFSLLVAEEQLISALEILKKNALPRENY 104

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  E+F        +   +      A+  E+A T   I G++  RVH+V          
Sbjct: 105 VSLGEVF-SGQGMISSQSEERARMAYAISQELANTFSRIDGVLTTRVHVVPGYTDQAVDS 163

Query: 168 GARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210
              P+  + IR    S       +IR + A ++P+L+    +V+
Sbjct: 164 KILPSMGIFIRHTPDSPVVNMLPSIREVAAKSLPDLEYDRTSVM 207


>gi|46562142|ref|YP_009157.1| type III secretion lipoprotein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447679|gb|AAS94345.1| type III secretion lipoprotein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235505|gb|ADP88358.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris RCH1]
          Length = 271

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L     N +   L +  I+        NG ++SV    V +A   L    LP    
Sbjct: 34  LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  ++F   +    +   ++     A+  E+A T   I G++ AR H+V+         
Sbjct: 94  QSLGKVF-SGDGMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152

Query: 168 GARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V +R    S        IR + A AVP LD   V+V+
Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196


>gi|312883870|ref|ZP_07743587.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368328|gb|EFP95863.1| hypothetical protein VIBC2010_01268 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 247

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  ++  + N +   L    +      +      + V ++ +  A   L   G P    
Sbjct: 23  LYTGVDQKEGNEMLSILLSEGVVASKEPDKDNTVKLMVDNAQIAFAVDVLKRNGYPREQF 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           ++  ++F K +    +   +    + A   E++ T+  I G++ ARVH+V+ +       
Sbjct: 83  STLKDVFPKDD-LISSPLAERARLIYAKSQELSATLSQIDGVLVARVHVVLEEEELRPGE 141

Query: 168 GA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                +ASV I+        S    I+ LV  ++  L+   ++V+
Sbjct: 142 RPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV 186


>gi|153832501|ref|ZP_01985168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           harveyi HY01]
 gi|156973996|ref|YP_001444903.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116]
 gi|148871296|gb|EDL70168.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           harveyi HY01]
 gi|156525590|gb|ABU70676.1| hypothetical protein VIBHAR_01707 [Vibrio harveyi ATCC BAA-1116]
          Length = 252

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 11/186 (5%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVP 86
            V ++L +             LY  +   + N +   L    +      +      + V 
Sbjct: 12  AVSMLLVLFLV-----GCQTELYTGVSQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVD 66

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           ++ +  A   L  +G P    ++  E+F K +    +   +    + A   E++ T+  I
Sbjct: 67  NAQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSSTLSQI 125

Query: 147 SGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
            G++ ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+ 
Sbjct: 126 DGVLVARVHVVLEDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNY 185

Query: 205 GDVTVL 210
             ++V+
Sbjct: 186 DRISVV 191


>gi|84785890|gb|ABC62084.1| secretion and cellular translocation protein J [Chlamydophila
           psittaci]
          Length = 330

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 20/220 (9%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRIS-----DNGSS- 82
           +   + F+   F   S +  +L V  L   + N I V L    +  +         G + 
Sbjct: 6   ISCCLFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAS 65

Query: 83  ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
                 ISVP+  + +A   L   GLP     S  +LF K      +   ++I     L 
Sbjct: 66  SXQLWDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLS 124

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193
            ++A TI+ + GIV A V I      +  +     TASV I+        +      I+ 
Sbjct: 125 EQMASTIRKMDGIVDASVQISF---TTEAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           LVA+AVP L   +V+V+                L   +  
Sbjct: 182 LVASAVPGLSTENVSVISDRASYSDITINGPWGLTDEIDY 221


>gi|332159951|ref|YP_004296528.1| type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607497|emb|CBY28995.1| secretion system apparatus SsaJ [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664181|gb|ADZ40825.1| Type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862423|emb|CBX72582.1| secretion system apparatus lipoprotein ssaJ [Yersinia
           enterocolitica W22703]
          Length = 243

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 7/182 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSM 89
           +M  +     ++    + LY  L   + N++   L    I            +++V  S 
Sbjct: 7   LMALLLVVMSLSGCGME-LYSGLSEGEANQMLALLMLHQIKAEKQSEKGGTVALNVDKSQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     S  ELF        +   ++   V   E ++   +  + G+
Sbjct: 66  FINAVELLRQHGFPRQRFASVDELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVT 208
           + A V I MP      K      ASV I+        S    I++L+   +P +D   ++
Sbjct: 125 IQADVTIAMPAPT-DGKSSVPHAASVFIKYSPEVNLLSYQPQIKNLIRDGIPGIDFSQIS 183

Query: 209 VL 210
           V+
Sbjct: 184 VV 185


>gi|313106063|ref|ZP_07792321.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 39016]
 gi|310878823|gb|EFQ37417.1| Flagella M-ring outer membrane protein precursor [Pseudomonas
           aeruginosa 39016]
          Length = 185

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 73/196 (37%), Gaps = 12/196 (6%)

Query: 359 IAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQL 418
             V+ ++ ++    G  + Q      LA   ++V  + G ++ RGD++++ +  F   Q 
Sbjct: 2   AVVLDDQMKVDAKTGEVSHQPWSADELARFTRLVQDSVGYDASRGDSVSVINAPFAPAQA 61

Query: 419 FNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKS 478
               ++           F  ++  ++ ++  L++ F  L  +          K   GG  
Sbjct: 62  EEIDSIPF----YSQPWFWDIVKQVLGVLFILVLVFGVLRPVLSNITGGGKGKSLAGGGG 117

Query: 479 ILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEIN 538
                 +  +   G + +D +++   +  +            +         + +++  +
Sbjct: 118 RDGDLALGESGLEGSLADDRVSIGGPSSILLPSP--------TEGYDAQLNAIKNLVAQD 169

Query: 539 EERFAKILRKWARSEI 554
             R A+++++W  ++ 
Sbjct: 170 PGRVAQVVKEWINADE 185


>gi|269967253|ref|ZP_06181317.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B]
 gi|269828109|gb|EEZ82379.1| putative type III secretion lipoprotein [Vibrio alginolyticus 40B]
          Length = 237

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 13/210 (6%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVGKARIHLAAQGLPSS 105
             LY  +   + N +   L    +      +      + V SS +  A   L  +G P  
Sbjct: 11  TELYTNVTQKEGNEMLSILLSEGVVATKEPDKDNTVKLMVDSSQIAFAVDALKRKGYPRE 70

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
             ++  E+F K +    +   +    V A   E++ T+  I G++ ARVH+V+ D     
Sbjct: 71  QFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLEDQDLRP 129

Query: 166 KIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
                  +ASV I+        S    I+ LV  ++  L+   ++V+            E
Sbjct: 130 GERPTPASASVFIKHAADIALDSYVPQIKLLVNNSIEGLNYDRISVV-------MVPSSE 182

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFL 253
             +  ++      +  ++       L A L
Sbjct: 183 VRVATQNNQFKSILSVQVTKETANNLIAIL 212


>gi|297620340|ref|YP_003708477.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU
           86-1044]
 gi|297375641|gb|ADI37471.1| type III secretion lipoprotein SctJ [Waddlia chondrophila WSU
           86-1044]
          Length = 341

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 70/219 (31%), Gaps = 18/219 (8%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG----------- 80
            + + ++            +   L+  + N I V LS   +D     +            
Sbjct: 13  ILFIVISLSLLTGCEKRKTIVNGLDEREANEIVVFLSNEGVDAAKVKSAEGSGGGGSKIA 72

Query: 81  -SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEI 139
              ISVP     +A   L   GLP  S  S   +F        +   + I     L  +I
Sbjct: 73  LWDISVPEEQAIEAMSMLNRAGLPKRSGQSLLGIF-SNTGLVPSEMQERIRYQAGLAEQI 131

Query: 140 ARTIQSISGIVAARVHIVMPDMGSFRKIGA--RPTASVMIRAINPSVYKS---AEAIRHL 194
           A TI+   G++ A V I  P+             TASV ++        +      I+ L
Sbjct: 132 ASTIRKFDGVLDAEVQISFPEEDPLNPGQKKGEITASVYVKHSGVLDDPNTHAITKIKRL 191

Query: 195 VAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           V  AV  L   +VTV+    +        +    +    
Sbjct: 192 VTGAVTGLKYDNVTVIADRARFADFPIGLQRARDEDKEY 230


>gi|51594674|ref|YP_068865.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ
           [Yersinia pseudotuberculosis IP 32953]
 gi|153948722|ref|YP_001402777.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis IP 31758]
 gi|170026123|ref|YP_001722628.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis YPIII]
 gi|186893677|ref|YP_001870789.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51587956|emb|CAH19559.1| type III secretion system apparatus lipoprotein, EscJ/SsaJ
           [Yersinia pseudotuberculosis IP 32953]
 gi|152960217|gb|ABS47678.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752657|gb|ACA70175.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696703|gb|ACC87332.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pseudotuberculosis PB1/+]
          Length = 243

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 13/240 (5%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89
           ++  +     ++    + LY  L   + N++   L    I+   +I  +G   ++V    
Sbjct: 7   MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     +  ELF        +   ++   V   E ++   +  + G+
Sbjct: 66  FINAVELLRQNGFPRQRFITVDELFPANQ-LVTSPTQEQAKMVFLKEQQLENMLSHMDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208
           + A V + MP M    K     TASV I+       +S ++ I+ LV  AVP +D   ++
Sbjct: 125 IHADVTVAMP-MSVDGKNPLPHTASVFIKYSPEVNLQSYQSQIKGLVRDAVPGIDYAKIS 183

Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
           V+      +       +              +  +     +   +GV      V+  +  
Sbjct: 184 VV------MQPANYRFSASEAEQQQGPQTTVQWLLRHVGMVQNMVGVAFISLIVLMFVGW 237


>gi|329943273|ref|ZP_08292047.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10]
 gi|332287851|ref|YP_004422752.1| putative type III secretion system protein [Chlamydophila psittaci
           6BC]
 gi|313848423|emb|CBY17427.1| putative type III export protein [Chlamydophila psittaci RD1]
 gi|325506893|gb|ADZ18531.1| putative type III secretion system protein [Chlamydophila psittaci
           6BC]
 gi|328814820|gb|EGF84810.1| hypothetical protein G5Q_0963 [Chlamydophila psittaci Cal10]
 gi|328915113|gb|AEB55946.1| type III secretion protein SctJ [Chlamydophila psittaci 6BC]
          Length = 330

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 20/220 (9%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRIS-----DNGSS- 82
           +   + F+   F   S +  +L V  L   + N I V L    +  +         G + 
Sbjct: 6   ISCCLFFIMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAS 65

Query: 83  ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
                 ISVP+  + +A   L   GLP     S  +LF K      +   ++I     L 
Sbjct: 66  SEQLWDISVPAEQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLS 124

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193
            ++A TI+ + GIV A V I      +  +     TASV I+        +      I+ 
Sbjct: 125 EQMASTIRKMDGIVDASVQISF---TTEAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           LVA+AVP L   +V+V+                L   +  
Sbjct: 182 LVASAVPGLSTENVSVISDRASYSDITINGPWGLTDEIDY 221


>gi|227114184|ref|ZP_03827840.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 255

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89
             +L +        P    L   L  +D N     L    I     +   G ++ + +  
Sbjct: 7   VFLLLIGLLTGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKN 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T+  I G+
Sbjct: 65  MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           + ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P L   D
Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181


>gi|120586845|ref|YP_961190.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564259|gb|ABM30002.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Desulfovibrio vulgaris DP4]
          Length = 271

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 5/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L     N +   L +  I+        NG ++SV    V +A   L    LP    
Sbjct: 34  LYKGLNEEQANTMLATLLKRGIEVDKQSEGKNGYTLSVERRQVVQALEVLRENSLPREQY 93

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            S  ++F   +    +   ++     A+  E+A T   I G++ AR H+V+         
Sbjct: 94  QSLGKVF-SGDGMIASPSEEKARLSYAISQELADTFSRIDGVLTARAHVVLASSDVGTDT 152

Query: 168 GARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V +R    S        IR + A AVP LD   V+V+
Sbjct: 153 RTPASAAVFLRHTEDSPVVNLIPKIREMTAKAVPGLDYEKVSVM 196


>gi|16764759|ref|NP_460374.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167995043|ref|ZP_02576133.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|3024642|sp|P74852|SSAJ_SALTY RecName: Full=Secretion system apparatus lipoprotein ssaJ; Flags:
           Precursor
 gi|1669745|emb|CAA70532.1| secretion system apparatus [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16419930|gb|AAL20333.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205327210|gb|EDZ13974.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261246615|emb|CBG24425.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993298|gb|ACY88183.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157944|emb|CBW17439.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323129681|gb|ADX17111.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988296|gb|AEF07279.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 249

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|168239293|ref|ZP_02664351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736650|ref|YP_002114422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194712152|gb|ACF91373.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288000|gb|EDY27387.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 249

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|62180000|ref|YP_216417.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|168240922|ref|ZP_02665854.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168263759|ref|ZP_02685732.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463181|ref|ZP_02697112.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194446558|ref|YP_002040661.1| type III secretion apparatus lipoprotein YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194449848|ref|YP_002045412.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|197263539|ref|ZP_03163613.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200389425|ref|ZP_03216036.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|62127633|gb|AAX65336.1| Secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194405221|gb|ACF65443.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408152|gb|ACF68371.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195634338|gb|EDX52690.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197241794|gb|EDY24414.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199601870|gb|EDZ00416.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205339355|gb|EDZ26119.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205347655|gb|EDZ34286.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322714467|gb|EFZ06038.1| secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 249

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|16760502|ref|NP_456119.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141738|ref|NP_805080.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213022228|ref|ZP_03336675.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213584548|ref|ZP_03366374.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213620458|ref|ZP_03373284.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647278|ref|ZP_03377331.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213859469|ref|ZP_03385173.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289826228|ref|ZP_06545340.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25512033|pir||AC0698 probable pathogenicity island lipoprotein ssaJ [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502798|emb|CAD01956.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137366|gb|AAO68929.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 249

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IIFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|282890725|ref|ZP_06299245.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
 gi|281499318|gb|EFB41617.1| type III secretion lipoprotein SctJ [Parachlamydia acanthamoebae
           str. Hall's coccus]
          Length = 304

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 18/220 (8%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANI---DFRISDNGSS--- 82
           I+  + LF++     +      +   +   D N I V L+  NI       S+ G +   
Sbjct: 5   IVKIVYLFISLFLLTSCSSERTIVHGIREQDANEIIVFLNSKNIESTKVESSEGGGTGPQ 64

Query: 83  ------ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
                 I VP +    A   L  +GLP     S  ++F   +S   +   + I     L 
Sbjct: 65  KAVFWDIQVPENKAMDAMSFLDEEGLPRKHQESLLDIFGS-SSLVPSETQERIRYQAGLA 123

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVY--KSAEA-IR 192
            +IA TI+ I G++ A V I  P+        + P TASV I+             + IR
Sbjct: 124 QQIANTIKEIDGVIDANVMISFPEENPITGTTSGPITASVYIKHNGILDDPNSQLRSKIR 183

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLS 232
            LVAA+V  L   +VT++     + T      +     L 
Sbjct: 184 QLVAASVTGLKYDNVTIIGERAAI-TEQPFRMHSNALQLE 222


>gi|198244261|ref|YP_002215722.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197938777|gb|ACH76110.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 249

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|56413620|ref|YP_150695.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551622|ref|ZP_02345376.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168822279|ref|ZP_02834279.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|197362544|ref|YP_002142181.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|207857085|ref|YP_002243736.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|56127877|gb|AAV77383.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094021|emb|CAR59517.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|205323639|gb|EDZ11478.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205341290|gb|EDZ28054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|206708888|emb|CAR33218.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|320086111|emb|CBY95885.1| Secretion system apparatus lipoprotein ssaJ Flags: Precursor
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 249

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|317486819|ref|ZP_07945635.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Bilophila wadsworthia 3_1_6]
 gi|316921982|gb|EFV43252.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Bilophila wadsworthia 3_1_6]
          Length = 269

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 5/166 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
             +Y  L  + VN +   L +  I    +  G    ++SV    + ++   L    LP +
Sbjct: 32  VEVYRGLTEAQVNTMLSTLLKRGIRAEKTAAGKAGFTLSVDEDQLVQSLEILKENNLPRA 91

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
              +  ++F        ++  ++     A+  E++ T   I G++ ARVH+V+       
Sbjct: 92  DYENLGKVF-SGQGMISSASEEQARMAYAISQELSDTFSRIDGVLTARVHVVLGGTDQAT 150

Query: 166 KIGARPTASVMIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVL 210
                P+A+V +R    S        IR L + AVP+LD   V+V+
Sbjct: 151 DTRTLPSAAVFLRHTPDSPVVNLVAKIRELTSKAVPDLDYERVSVM 196


>gi|269105034|ref|ZP_06157729.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160669|gb|EEZ39167.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ PscJ) [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 265

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 71/186 (38%), Gaps = 11/186 (5%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVP 86
            V ++L +             LY  +   + N +   L    +      +      + V 
Sbjct: 25  AVSMLLVLFLV-----GCQAELYTGVSQKEGNEMLSVLLSEGVVATKEPDKDNTVKLMVD 79

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
           ++ +  A   L  +G P    ++  E+F K +    +   +    + A   E++ T+  I
Sbjct: 80  NAQIAFAIDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLIYAKSQELSATLSQI 138

Query: 147 SGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
            G++ ARVH+V+ D            +ASV I+        S    I+ LV  ++  L+ 
Sbjct: 139 DGVLVARVHVVLKDQNLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEGLNY 198

Query: 205 GDVTVL 210
             ++V+
Sbjct: 199 DRISVV 204


>gi|160875378|ref|YP_001554694.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Shewanella baltica OS195]
 gi|160860900|gb|ABX49434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS195]
 gi|315267578|gb|ADT94431.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS678]
          Length = 239

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 6/178 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGK 92
           +    F  +    +LY  L   + N++   L   +ID     +      S+ +       
Sbjct: 8   ILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIDKDQFIN 67

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           A   L   G P     +  +LF        +   +E       E ++ RT+ S+ G+++A
Sbjct: 68  AVELLRQNGFPKPHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISA 126

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
           RV I  P   S R+I    +ASV I+    +   + E  I+ LV  AVP L   +++V
Sbjct: 127 RVSIAEPAPDSGRQIALTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184


>gi|89897886|ref|YP_514996.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
 gi|89331258|dbj|BAE80851.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
          Length = 330

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 20/216 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANI------DFRISDNGSS---- 82
           + F+   F   S    +L V  L   + N I V L    +          S  G S    
Sbjct: 10  LFFVMTLFCCTSCDSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGGSTEQL 69

Query: 83  --ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             I+VP++ + +A   L   GLP     S  +LF K      +   ++I     L  ++A
Sbjct: 70  WDIAVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197
            TI+ + GIV A V I      +  +     TASV I+        +      I+ LVA+
Sbjct: 129 STIRKMDGIVDASVQISF---TTEAEENLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           AVP L   +V+V+                L   +  
Sbjct: 186 AVPGLSTENVSVISDRASYSDITINGPWGLSDEIDY 221


>gi|126174186|ref|YP_001050335.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Shewanella baltica OS155]
 gi|125997391|gb|ABN61466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS155]
          Length = 239

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 6/178 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGK 92
           +    F  +    +LY  L   + N++   L   +ID     +      S+ +       
Sbjct: 8   ILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFIN 67

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           A   L   G P     +  +LF        +   +E       E ++ RT+ S+ G+++A
Sbjct: 68  AVELLRQNGFPKPHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISA 126

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
           RV I  P   + R++    +ASV I+    +   + E  I+ LV  AVP L   +++V
Sbjct: 127 RVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184


>gi|168233604|ref|ZP_02658662.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471741|ref|ZP_03077725.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197247506|ref|YP_002146633.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|204927796|ref|ZP_03218997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194458105|gb|EDX46944.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197211209|gb|ACH48606.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|204323138|gb|EDZ08334.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205332334|gb|EDZ19098.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 249

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|269302618|gb|ACZ32718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 335

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 54  KLEVSDVNRISVALSEANIDFRISDNG------------SSISVPSSMVGKARIHLAAQG 101
            L   D N I V L    +  +                   I+VPS+ + +A   L   G
Sbjct: 31  GLPGRDANEIVVLLVSKGVAAQKLPQAAAATAGAATEQMWDIAVPSAQITEALAILNQAG 90

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  +LF K      +   ++I     L  ++A TI+ + GIV A V I     
Sbjct: 91  LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFTTE 149

Query: 162 GSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
               +     TASV I+        +      I+ L+A+AVP L   +V+V+        
Sbjct: 150 N---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLIASAVPGLVPENVSVVSDRAAYSD 206

Query: 219 ANEMERNILGKSLSI 233
                   L + +  
Sbjct: 207 ITINGPWGLTEEIDY 221


>gi|34498043|ref|NP_902258.1| type III secretion system apparatus lipoprotein [Chromobacterium
           violaceum ATCC 12472]
 gi|34103898|gb|AAQ60258.1| type III secretion system apparatus lipoprotein [Chromobacterium
           violaceum ATCC 12472]
          Length = 241

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 9/180 (5%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVG 91
           L +             LY  L   + N++   L   N+D     I +   ++ V      
Sbjct: 10  LLILMSLMGCKVD---LYSGLSEDEANQMLALLMLRNVDAEKKIIKEGNVTVRVEKEQFT 66

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            A   L   GLPS  + +  +LF        +   ++       E  + + ++ + G+++
Sbjct: 67  DAVEVLRQHGLPSKRTETMADLFPSGQ-LVTSPAQEQAKIGYLKEQLLEKMLRGMDGVIS 125

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
           A+V I    +   R+    P+ASV I+       +S E  I+ L+   VPNL   +++V+
Sbjct: 126 AQVSIA-ESVSQNRREAPAPSASVFIKYSPGINMQSRETDIKRLIHTGVPNLRSENISVV 184


>gi|182441001|dbj|BAG24126.1| HrcJ [Pseudomonas cichorii]
          Length = 263

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID +  +   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVKVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206
              +A+V I+        S    IR +VA+++P +   D
Sbjct: 146 QPASAAVFIKYRPDLEPDSVLPRIRRMVASSIPGMANAD 184


>gi|205352875|ref|YP_002226676.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272656|emb|CAR37566.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|309243403|gb|ADO51979.1| SsaJ [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627947|gb|EGE34290.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 249

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISL 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|227328506|ref|ZP_03832530.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 255

 Score =  110 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89
             +L +        P    L   L  +D N     L    I     +   G ++ + +  
Sbjct: 7   VFLLLIGLLTGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKN 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T+  I G+
Sbjct: 65  MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           + ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P L   D
Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181


>gi|238913187|ref|ZP_04657024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 249

 Score =  110 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPLEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|15618737|ref|NP_225023.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae
           CWL029]
 gi|15836361|ref|NP_300885.1| Yop translocation J [Chlamydophila pneumoniae J138]
 gi|16752212|ref|NP_445580.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39]
 gi|33242188|ref|NP_877129.1| secretion protein [Chlamydophila pneumoniae TW-183]
 gi|4377140|gb|AAD18965.1| Yop proteins translocation lipoprotein J [Chlamydophila pneumoniae
           CWL029]
 gi|6672018|dbj|BAA88646.1| Yop translocation J [Chlamydophila pneumoniae]
 gi|7189957|gb|AAF38818.1| type III secretion protein SctJ [Chlamydophila pneumoniae AR39]
 gi|8979202|dbj|BAA99036.1| Yop translocation J [Chlamydophila pneumoniae J138]
 gi|33236699|gb|AAP98786.1| secretion protein [Chlamydophila pneumoniae TW-183]
          Length = 335

 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 20/216 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRISDNG------------ 80
           + F+       S +  +L V  L   + N I V L    +  +                 
Sbjct: 10  LFFLMTLLCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKLPQAAAATAGAATEQM 69

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             I+VPS+ + +A   L   GLP     S  +LF K      +   ++I     L  ++A
Sbjct: 70  WDIAVPSAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMA 128

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197
            TI+ + G+V A V I         +     TASV I+        +      I+ L+A+
Sbjct: 129 STIRKMDGVVDASVQISFTTEN---EDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLIAS 185

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           AVP L   +V+V+                L + +  
Sbjct: 186 AVPGLVPENVSVVSDRAAYSDITINGPWGLTEEIDY 221


>gi|76574834|gb|ABA47308.1| HrcJ [Pseudomonas cichorii]
          Length = 263

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID +  +   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGEVFRKEGVI-SSPMEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206
              +A+V I+  N     S    IR +VA+++P +   D
Sbjct: 146 QPASAAVFIKYRNDLEPDSILPRIRRMVASSIPGMANAD 184


>gi|253688582|ref|YP_003017772.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755160|gb|ACT13236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 255

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89
             +L +        P    L   L  +D N     L    I     +   G ++ + +  
Sbjct: 7   VFLLLIGLLAGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRVDKTGVTLVIDAKN 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T+  I G+
Sbjct: 65  MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206
           + ARVH+V+P+  +  +     +A+V I+             IR +VA+++P L   D
Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLSGKD 181


>gi|291484173|dbj|BAI85248.1| hypothetical protein BSNT_02644 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 323

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 108/363 (29%), Gaps = 59/363 (16%)

Query: 210 LDSTGKLLTANEMER----NILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
           +D        ++ +     +       I   ++ +I+ ++   L   +G D    +V A+
Sbjct: 1   MDQNSTYYDKSDSDAGSYADSYSSQQGIKSQVEKDIQKHVQSLLGTMMGQDKVVVSVTAD 60

Query: 266 LNMDTQQIREIVYDP-----DSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKV 320
           ++   +   E + +P        +  S     +  + + +               + +  
Sbjct: 61  IDFTKENRTEDIVEPVDKENMEGIAVSAEKVSETYQGDGAANGGTAGT-GEEDVTNYKAD 119

Query: 321 PLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGK 380
                  N +K   + NYE+N          YK+  L I V+V      +    ++   +
Sbjct: 120 GENTESGNYEKNSNKINYEVNRIHKEIAESPYKVRDLGIQVMVEPP---DAKNTASLSTE 176

Query: 381 IDSYLAEINKIV----------SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMD 430
               + +I   V                ++   + I ++   F      ++ T + S + 
Sbjct: 177 RQDEIQKILSTVVRTSLDKDETQNQNLSDADINNKIVVSVQPFDGKVNLDTNTEKSSGIP 236

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
           + +     V+ A + ++  +L+                                      
Sbjct: 237 LWAYIVGGVLIAAIIVLIIMLI-------------------------RKKRAQEDEFEEY 271

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWA 550
              +P + I L   N++            N         +L  M +   E FAK+LR W 
Sbjct: 272 EYEVPQEPINLPDINEEE-----------NETAESVRRKQLEKMAKDKPEDFAKLLRSWL 320

Query: 551 RSE 553
             +
Sbjct: 321 AED 323


>gi|34500890|gb|AAQ73918.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 255

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89
             +L +        P    L   L  +D N     L    I     +   G ++ + +  
Sbjct: 7   VFLLLIGLVAGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKN 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T+  I G+
Sbjct: 65  MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLKERARYIYALSQEVEATLAQIDGV 123

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           + ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P L   D
Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181


>gi|170737791|ref|YP_001779051.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia MC0-3]
 gi|169819979|gb|ACA94561.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia MC0-3]
          Length = 295

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|29840690|ref|NP_829796.1| type III secretion protein SctJ [Chlamydophila caviae GPIC]
 gi|29835040|gb|AAP05674.1| type III secretion protein SctJ [Chlamydophila caviae GPIC]
          Length = 330

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 78/216 (36%), Gaps = 20/216 (9%)

Query: 34  MLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRISDNG------------ 80
           + F+   F   S +  +L V  L   + N I V L    +  +                 
Sbjct: 10  LFFVMTLFCCTSCNSRSLIVHGLPGREANEIVVLLVSKGVAAQKQPQAAASTGGAATEQL 69

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIA 140
             ISVP+  + +A   L   GLP     S  +LF K      +   ++I     L  ++A
Sbjct: 70  WDISVPAPQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLSEQMA 128

Query: 141 RTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRHLVAA 197
            TI+ + GIV A V I      +  +     TASV I+        +      I+ LVA+
Sbjct: 129 STIRKMDGIVDASVQISF---TTDAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKRLVAS 185

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           AVP L   +V+V+                L   +  
Sbjct: 186 AVPGLSTENVSVISDRASYSDITINGPWGLSDEIDY 221


>gi|206563892|ref|YP_002234655.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092671|gb|AAL59400.1| BcscJ [Burkholderia cenocepacia]
 gi|28394252|gb|AAO31727.1| BcscJ [Burkholderia cenocepacia]
 gi|198039932|emb|CAR55910.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 294

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|85059273|ref|YP_454975.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|84779793|dbj|BAE74570.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 242

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 6/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   D N++   L + +ID         G ++ V  +    A   L   G P    
Sbjct: 23  LYSGLPEEDANQMLAILMQHHIDADKQRGEGGGITLRVDQTQFINAVELLRLNGFPHRKY 82

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    N   ++   ++   +   E  I   +  + G+V A V I     G     
Sbjct: 83  TTT-EMMFPPNQLVVSPNEEQQKILYLKEQRIEGMLSQMEGVVQADVAIASRSQGGEG-D 140

Query: 168 GARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
            A  + +V I+       ++    IR+LV  AVP L    +++L
Sbjct: 141 TAPISVAVFIKYSPQVNMETFRMQIRNLVENAVPGLQYDHISIL 184


>gi|107025872|ref|YP_623383.1| Type III secretion system lipoprotein HrcJ/YscJ [Burkholderia
           cenocepacia AU 1054]
 gi|116692944|ref|YP_838477.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia cenocepacia HI2424]
 gi|105895246|gb|ABF78410.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia AU 1054]
 gi|116650944|gb|ABK11584.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia cenocepacia HI2424]
          Length = 292

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|291086627|ref|ZP_06356294.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Citrobacter youngae ATCC 29220]
 gi|291067482|gb|EFE05591.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Citrobacter youngae ATCC 29220]
          Length = 247

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 6/182 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNG-SSISVPSSM 89
            +   +    +   +   LY  L   + N+++V L   +ID   +++ +G  S+S+  + 
Sbjct: 7   FIAIFSVVLSLCGCN-AELYDNLSQEEANQMAVLLLARHIDVDKKVNKDGLFSLSIDKAD 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P     S  ++F        +   +    +   E  + R +  + G+
Sbjct: 66  FASAVEILRLHGYPQKKYRSVEDVFPSDQ-LVTSPGQELSKIIYLKEQGLERMLADMDGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVT 208
           ++ RV I  P         A  + +V I+    +    S   I+ LV  ++P+L    ++
Sbjct: 125 ISTRVVIAQPLNTDDDADKAMTSVAVFIKYAPENNLQNSLTQIKGLVHDSIPDLSYDKIS 184

Query: 209 VL 210
           ++
Sbjct: 185 IV 186


>gi|304408569|ref|ZP_07390190.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS183]
 gi|307305397|ref|ZP_07585145.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica BA175]
 gi|304352390|gb|EFM16787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica OS183]
 gi|306911700|gb|EFN42125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shewanella baltica BA175]
          Length = 239

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 6/178 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN----GSSISVPSSMVGK 92
           +    F  +    +LY  L   + N++   L   +ID     +      S+ +       
Sbjct: 8   ILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFIN 67

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           A   L   G P     +  +LF        +   +E       E ++ RT+ S+ G+++A
Sbjct: 68  AVELLRQNGFPKPHYANIEDLFPSGQ-LVTSPAQEEAKMGYLKEQQLERTLSSMDGVISA 126

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            V I  P   + R++    +ASV I+    +   + E  I+ LV  AVP L   +++V
Sbjct: 127 SVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLTNTENQIKSLVQNAVPGLSYDNISV 184


>gi|312881276|ref|ZP_07741074.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309371168|gb|EFP98622.1| YscJ/HrcJ family type III secretion apparatus lipoprotein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 240

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 8/166 (4%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF--RISDNGS--SISVPSSMVGKARIHLAAQGLPSSS 106
           LY  L  ++ N++   L   +ID    +       ++ +       A   L   G P + 
Sbjct: 22  LYQNLPQAEANQMVALLMLNHIDASSEMDAKTGKVTLKIEKDQFINAVELLRQNGYPKAE 81

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
              G E          +   +E       E ++ RT+ ++ G+++ARV I   D  +   
Sbjct: 82  Y-VGIEQLFPSGQLVSSPAQEEAKMSYLKEQQLERTLSNMDGVISARVSIAQNDSSASSS 140

Query: 167 IGAR--PTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTV 209
                  +ASV I+    +   ++E+ IR+L+  AVP+L   ++++
Sbjct: 141 HQTPDQKSASVYIKYSPEANLGNSESQIRNLIKNAVPDLSYENISL 186


>gi|194350719|gb|ACF53790.1| HrcJ [Pantoea stewartii]
          Length = 146

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      + +G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIKAEKHTNKDGITVMVDTADLNRAVHILDAAGLPRPTRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERVAPGEPILPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRPELDPDVIEPRIRQMVASSLPGL 146


>gi|50121023|ref|YP_050190.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560409|gb|AAS20369.1| HrcJ [Pectobacterium atrosepticum]
 gi|49611549|emb|CAG74997.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 255

 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L   L  +D N     L    I     +   G ++ + +  + +A   L A GLP  S  
Sbjct: 24  LNRGLSENDANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRT 83

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  E+F K +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +  
Sbjct: 84  NLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPV 142

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206
              +A+V I+             IR +VA+++P L   D
Sbjct: 143 QPASAAVFIKYRAELEPDGMEPRIRRMVASSIPGLSGKD 181


>gi|167030900|gb|ABZ05768.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 212

 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 6/178 (3%)

Query: 32  PIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSM 89
             +L +        P    L   L  +D N     L    I     +   G ++ + +  
Sbjct: 7   VFLLLIGLLTGCGEP--IELNRGLSENDANEAISMLGRYQIGAEKRMDKTGVTLVIDAKN 64

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           + +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T+  I G+
Sbjct: 65  MERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEATLAQIDGV 123

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGD 206
           + ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P L   D
Sbjct: 124 LVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRRMVASSIPGLSGKD 181


>gi|330443944|ref|YP_004376930.1| type III secretion protein SctJ [Chlamydophila pecorum E58]
 gi|328807054|gb|AEB41227.1| type III secretion protein SctJ [Chlamydophila pecorum E58]
          Length = 330

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 54  KLEVSDVNRISVALSEANIDFRI------SDNGSS------ISVPSSMVGKARIHLAAQG 101
            L   + N I V L    +  +       S  G S      ISVPS+ + +A   L   G
Sbjct: 31  GLPGREANEIVVLLVSKGVAAQKLPKAAASTGGGSTEQLWDISVPSAQITEALAILNQAG 90

Query: 102 LPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161
           LP     S  +LF K      +   ++I     L  ++A TI+ + GIV A V I     
Sbjct: 91  LPRMKGTSLLDLFAK-QGLVPSELQEKIRYQEGLSEQMASTIRKMDGIVDASVQISFSTE 149

Query: 162 GSFRKIGARPTASVMIRAINPSV-YKSAEA--IRHLVAAAVPNLDMGDVTVLDST 213
               +     TASV ++         S  A  I+ L+A+AVP L   +V+V+   
Sbjct: 150 ----EDVVPLTASVYVKHRGVLDNPNSIMASKIKRLIASAVPGLTPENVSVVSDR 200


>gi|62185504|ref|YP_220289.1| putative type III export protein [Chlamydophila abortus S26/3]
 gi|62148571|emb|CAH64343.1| putative type III export protein [Chlamydophila abortus S26/3]
          Length = 330

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 20/220 (9%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYV-KLEVSDVNRISVALSEANIDFRISDNG-------- 80
           +   + F+   F   S +  +L V  L   + N I V L    +  +             
Sbjct: 6   ISCCLFFIMTLFCCTSCNSRSLIVHGLAGREANEIVVLLVSKGVAAQKQPQAAASTGGAS 65

Query: 81  ----SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALE 136
                 ISVP++ + +A   L   GLP     S  +LF K      +   ++I     L 
Sbjct: 66  AEQLWDISVPAAQITEALAILNQAGLPRMKGTSLLDLFAK-QGLVPSEMQEKIRYQEGLS 124

Query: 137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS---AEAIRH 193
            ++A TI+ + GIV A V I      +  +     TASV I+        +      I+ 
Sbjct: 125 EQMASTIRKMDGIVDASVQISF---TTEAEDNLPLTASVYIKHRGVLDNPNSIMVSKIKR 181

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
           LVA+AVP L   +V+V+                L   +  
Sbjct: 182 LVASAVPGLSTENVSVISDRASYSDITINGPWGLTDEIDY 221


>gi|284007036|emb|CBA72311.1| type III secretion system apparatus lipoprotein EscJ,SsaJ
           [Arsenophonus nasoniae]
          Length = 234

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 11/206 (5%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMVGKAR 94
              F+       LY  L   + N++   L   +ID     +G +    + +       A 
Sbjct: 1   MVLFLTGCK-VELYRNLPQDEANQMVALLMLNHIDVNSEIDGKTGKVTLQIEKDKFIDAV 59

Query: 95  IHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARV 154
             L   G P +    G E          +   +E       E ++ RT+ S+ G+++ARV
Sbjct: 60  EILRQNGYPKTQY-VGIEDLFPAGQLVSSPAQEEAKMRYLKEQQLERTLSSMDGVISARV 118

Query: 155 HIVMPDMGSFRKIGARP--TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLD 211
            I   D             + +V I+          EA IR+L+  A+  L    +++  
Sbjct: 119 SIAQADNSESNIDNTTAEKSVAVYIKYSPEVNMNGVEAQIRNLIKNAISGLQSDKISLFL 178

Query: 212 STGKLLTANEMERNILGKSLSIVQAI 237
              +     + ++    +    +Q  
Sbjct: 179 QPAE--FRYQPQKMQTNQQWQYLQNY 202


>gi|333003034|gb|EGK22588.1| flagellar M-ring protein domain protein [Shigella flexneri VA-6]
          Length = 240

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 91/263 (34%), Gaps = 23/263 (8%)

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
            + +   +      T   N  +   +      S   + ++ E SNYE++     T  +  
Sbjct: 1   MSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVG 60

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  
Sbjct: 61  DVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSP 116

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  +                      ++ A  +L+  L+   L   A+R           
Sbjct: 117 FNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAVK 172

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            V  ++                  ++      ++D     R    R+ + V  Q   R+ 
Sbjct: 173 TVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIR 217

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            M + +    A ++R+W  ++ E
Sbjct: 218 EMSDNDPRVVALVIRQWINNDHE 240


>gi|254250200|ref|ZP_04943520.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184]
 gi|124876701|gb|EAY66691.1| Secretory protein YscJ/FliF [Burkholderia cenocepacia PC184]
          Length = 238

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQAALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           P  S  S  ELF K      T   + +  +  +  +++RT+Q I G+V ARV +V+P+  
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSRTLQDIEGVVVARVQVVIPEND 154

Query: 163 SFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
                    +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 155 PLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|312958838|ref|ZP_07773357.1| type III secretion system rscJ [Pseudomonas fluorescens WH6]
 gi|311286608|gb|EFQ65170.1| type III secretion system rscJ [Pseudomonas fluorescens WH6]
          Length = 265

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 25/180 (13%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSM----------VGKARIH 96
               L+ +L   + N +   L++ +I  +         VP+            +G+A   
Sbjct: 22  ERVELHRQLSEQEANEVIAELADKHIRAQK--------VPAKDGVVVVVDAVDIGRAVRT 73

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L A GLP  +  +  + F K      T   +    + AL  E+  T+ +I G++ ARVH+
Sbjct: 74  LEAVGLPKVARTTLGDTFRKDGVI-STPLEERARYIYALSQELEATLSNIDGVIVARVHV 132

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNL-----DMGDVTVL 210
           V+P+  +  +     +ASV I+        +  + +R +VA+++P +     +   +TV+
Sbjct: 133 VLPERIAPGEPVQPASASVFIKHDPRLDPDNIRSRVRRMVASSIPGMSTTVDNPQKLTVV 192


>gi|51103218|gb|AAT96359.1| HrcJ [Pseudomonas viridiflava]
          Length = 263

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID +  +   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELASKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206
              +A+V I+        S    IR +VA+++P +   D
Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNAD 184


>gi|3776130|emb|CAA12196.1| SsaJ [Salmonella typhimurium]
          Length = 189

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 6/181 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            A+V I +P         +  + +V I+       ++    I+ L+  ++P L    +++
Sbjct: 124 NAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISI 182

Query: 210 L 210
           L
Sbjct: 183 L 183


>gi|333004042|gb|EGK23576.1| flagellar M-ring protein domain protein [Shigella flexneri K-272]
 gi|333017815|gb|EGK37122.1| flagellar M-ring protein domain protein [Shigella flexneri K-227]
          Length = 240

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 91/263 (34%), Gaps = 23/263 (8%)

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
            + +   +      T   N  +   +      S   + ++ E SNYE++     T  +  
Sbjct: 1   MSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVG 60

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  
Sbjct: 61  DVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSP 116

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKG 472
           F  +                      ++ A  +L+  L+   L   A+R           
Sbjct: 117 FNSSNESGGALP----FWQQQVFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAVK 172

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
            V  ++                  ++      ++D     R    R+ + V  Q   R+ 
Sbjct: 173 TVQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIR 217

Query: 533 HMIEINEERFAKILRKWARSEIE 555
            M + +    A ++R+W  ++ E
Sbjct: 218 EMSDNDPRVVALVIRQWINNDHE 240


>gi|260778625|ref|ZP_05887517.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604789|gb|EEX31084.1| type III secretion apparatus lipoprotein YscJ/HrcJ family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 242

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 9/182 (4%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS----ISVPSSMV 90
           L +     +       LY  L  S+ N++   L   +ID     +  +    + +     
Sbjct: 7   LALVMALLLTGCK-VELYQNLPQSEANQMVALLMLNHIDASSETDAKTGKVTLKIEKDQF 65

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P +    G E          +   ++       E ++ RT+ S+ G++
Sbjct: 66  INAVELLRQNGYPKAEY-VGIEQLFPSGQLVSSPAQEDAKMSYLKEQQLERTLSSMDGVI 124

Query: 151 AARVHIVMPDMGSFRKIGARP--TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
           +ARV I   D  +     A    +A+V I+    +   ++E+ IR+L+  AVP+L   ++
Sbjct: 125 SARVSIAQSDKSTNTGRAAPSEKSAAVYIKYSPEANLGNSESQIRNLIKNAVPDLQYENI 184

Query: 208 TV 209
           ++
Sbjct: 185 SL 186


>gi|194350697|gb|ACF53779.1| HrcJ [Erwinia psidii]
          Length = 146

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDF--RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I    R S +G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQADKRTSKDGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEPRIRQMVASSLPGL 146


>gi|194350699|gb|ACF53780.1| HrcJ [Erwinia pyrifoliae]
          Length = 146

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      + +G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLANKDGITVMVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRPDLDPDIIEPRIRRMVASSLPGL 146


>gi|190894055|ref|YP_001984349.1| nodulation protein [Rhizobium etli CIAT 652]
 gi|190699716|gb|ACE93799.1| nodulation protein [Rhizobium etli CIAT 652]
          Length = 273

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90
              +A   F+ +   D L   L+  D     V L  A I   +        +I+  ++  
Sbjct: 22  AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAITAETADH 80

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   LA  GLP  S  +  ELF   N F +T + Q+     A E ++A T+  + G+ 
Sbjct: 81  ARAIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYATEQQLAETLSGLDGVA 139

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            ARVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V
Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199

Query: 210 L 210
           +
Sbjct: 200 V 200


>gi|238897378|ref|YP_002923055.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465133|gb|ACQ66907.1| needle complex inner membrane lipoprotein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 249

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 7/225 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSM 89
           I         +++ +   LY  L  S+ N++   L   +I+       D   +++V    
Sbjct: 7   IFYIFLIILSLSACN-VQLYSGLAQSEANQMLALLMLHHINAEKQQNKDGTVTVNVDRKH 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   L   G P  +  +  ++F        +   ++   V   E ++   +  + G+
Sbjct: 66  FIDAVELLRQNGFPRRNYVTVDKIFPSNQ-LVTSPGQEQAKMVYIKEQQLESMLSHMEGV 124

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVT 208
           +   V I +    +  K     +ASV ++       +  ++ I++L+  A+P +D   ++
Sbjct: 125 IRVDVSIAVAAPSND-KNMNPSSASVFMKYSPEINLEIYQSQIKNLIHDAIPGIDYSKIS 183

Query: 209 VLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           +L          +                  E  +   K +   L
Sbjct: 184 ILMQPANFRFTPKKITEADNLQKQEQSHSALEWLLEHIKVIQMIL 228


>gi|89255318|ref|NP_659983.2| nodulation protein [Rhizobium etli CFN 42]
 gi|89213272|gb|AAM54996.2| nodulation protein [Rhizobium etli CFN 42]
          Length = 273

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90
              +A   F+ +   D L   L+  D     V L  A I   +        +I+  S+  
Sbjct: 22  AAMLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADH 80

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+ 
Sbjct: 81  ARAIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 139

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            ARVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V
Sbjct: 140 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 199

Query: 210 L 210
           +
Sbjct: 200 V 200


>gi|194350691|gb|ACF53776.1| HrcJ [Brenneria lupinicola]
          Length = 146

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      +  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVVEPRIRRMVASSLPGL 146


>gi|218681694|ref|ZP_03529495.1| nodulation protein [Rhizobium etli CIAT 894]
          Length = 268

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMV 90
              +A   F+ +   D L   L+  D     V L  A I   +        +I+  ++  
Sbjct: 25  AAMLALCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMKSEKGGTYAIAAETADH 83

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
            +A   LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+ 
Sbjct: 84  ARAIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVA 142

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
            ARVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V
Sbjct: 143 TARVHVVLPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSV 202

Query: 210 L 210
           +
Sbjct: 203 V 203


>gi|167567520|ref|ZP_02360436.1| type III secretion system apparatus lipoprotein [Burkholderia
           oklahomensis EO147]
          Length = 224

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L  ++ N++   L   +I      + D   +I V S     A   +   GLP    
Sbjct: 25  LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  +LF        +   ++       E ++ + ++++ G+V A+V I   +  + R+ 
Sbjct: 85  AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142

Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
             +P+ASV ++      + + E  IR LV    P L    V+V+
Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186


>gi|194350683|gb|ACF53772.1| HrcJ [Erwinia mallotivora]
 gi|194350685|gb|ACF53773.1| HrcJ [Erwinia mallotivora]
 gi|194350693|gb|ACF53777.1| HrcJ [Brenneria lupinicola]
          Length = 146

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      +  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  NGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146


>gi|194350695|gb|ACF53778.1| HrcJ [Erwinia psidii]
          Length = 146

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N ++  L   +I      +  G ++ V ++ + +A   L A GLP  +  +  E+F K
Sbjct: 1   DANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLPRPARTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
                 T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  DGVI-STPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRPDLDPDVIEPRIRRMVASSLPGL 146


>gi|167574399|ref|ZP_02367273.1| type III secretion system apparatus lipoprotein [Burkholderia
           oklahomensis C6786]
          Length = 249

 Score =  105 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L  ++ N++   L   +I      + D   +I V S     A   +   GLP    
Sbjct: 25  LYTNLPEAEANQMIALLMLRDIAVDKKPLKDGNVTIRVESDQFVNAVELMRQNGLPRRKL 84

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  +LF        +   ++       E ++ + ++++ G+V A+V I   +  + R+ 
Sbjct: 85  AALEDLFPPGQ-LVTSPAQEQAKITFLKEQQLEKMLRAMDGVVDAQVSIAEAEPQN-RRD 142

Query: 168 GARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
             +P+ASV ++      + + E  IR LV    P L    V+V+
Sbjct: 143 PPQPSASVFVKYSPERNFGARETEIRSLVVTGTPGLSPDHVSVV 186


>gi|187919914|ref|YP_001888945.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia phytofirmans PsJN]
 gi|187718352|gb|ACD19575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia phytofirmans PsJN]
          Length = 273

 Score =  105 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 10/186 (5%)

Query: 29  ILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISV 85
           + + ++ F+      +S     L+  LE    N+I   LS+  I+    R +D   ++SV
Sbjct: 3   LALIMLPFLFLIGCKSS-----LFEGLEEDQANQIIAVLSQHGIEGVKDRSADKKWNVSV 57

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
               V  A        LP  +  +  +LF              +  V  L  E++ T++ 
Sbjct: 58  DVDDVVSATEITREYALPRDNHANLGDLF-SRQGLISNPDEDRVRYVYGLTQELSETLEK 116

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDM 204
           I G++ ARVHIV P+     +  A P+ASVM+R  +    +   + IR+LVA +V  L  
Sbjct: 117 IDGVLVARVHIVQPERDPLMRQVAPPSASVMLRYRSDYNLEYMRDKIRNLVAGSVEGLTP 176

Query: 205 GDVTVL 210
             V++ 
Sbjct: 177 DRVSLT 182


>gi|257487964|ref|ZP_05642005.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 222

 Score =  105 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 62  RISVALSEANIDF--RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVN 118
            +   L    I    ++ DNG   + V      +A   L   GLP  S ++  E+F K N
Sbjct: 1   AMLAVLLRDGIPASRKVQDNGQLKVMVDEKRFAQAMAALDDAGLPGQSFSNMGEVF-KGN 59

Query: 119 SFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIR 178
               +   +    V AL  E++ T+  I GI++ARVH+V+PD    +++ +  +ASV++R
Sbjct: 60  GLVSSPVQERAQMVYALSEELSHTVSQIDGILSARVHVVLPDNDLLKRVISPSSASVLVR 119

Query: 179 AINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               +        I+ LVA  +  L    V+V 
Sbjct: 120 FDPRTDINVLIPQIKTLVANGISGLGYDGVSVT 152


>gi|327192836|gb|EGE59762.1| nodulation protein [Rhizobium etli CNPAF512]
          Length = 250

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 6/179 (3%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGK 92
            +A   F+ +   D L   L+  D     V L  A I   +        +I+  S+   +
Sbjct: 1   MLAFCLFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHAR 59

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           A   LA  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+  A
Sbjct: 60  AIELLAGAGLPRQSFGNVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATA 118

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
           RVH+V+P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V+
Sbjct: 119 RVHVVLPEENGRGLIKEKAKAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 177


>gi|304414266|ref|ZP_07395634.1| needle complex inner membrane lipoprotein [Candidatus Regiella
           insecticola LSR1]
 gi|304283480|gb|EFL91876.1| needle complex inner membrane lipoprotein [Candidatus Regiella
           insecticola LSR1]
          Length = 243

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 60/181 (33%), Gaps = 6/181 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMV 90
              +       +    +LY  L   + N +   L   NI             + V     
Sbjct: 7   GFMVLLILLSLTGCKVDLYNGLAEGEANEMLALLMLHNISANKESEKGGKVGLKVERDHF 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P  S  +  +LF        +   ++   V   E ++   +  + G++
Sbjct: 67  ITAVELLRQNGYPRKSYATVDQLFPSNQ-LVTSPVQEQAKMVYLKEQQLESMLSHMDGVI 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209
            A V I M       K+    +ASV I+        S    I+ LV  AVP +    ++V
Sbjct: 126 HADVTIAMMAP-VDGKVSVPSSASVFIKFSPEVNLASYSPQIKSLVQDAVPGVAYEKISV 184

Query: 210 L 210
           L
Sbjct: 185 L 185


>gi|51103136|gb|AAT96279.1| HrcJ [Pseudomonas viridiflava]
 gi|51103178|gb|AAT96320.1| HrcJ [Pseudomonas viridiflava]
          Length = 263

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           L+  L   D N +   L+  NID +  +   G ++ V +  + +A   L A GLP  S +
Sbjct: 27  LHRDLTEQDANEVLAELAGKNIDAQKRLDKGGVAVLVSTQDISRAVRVLEAVGLPRRSRS 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F K      +   +    + AL  E+ +T+  I G+V ARVH+V+P+  +  +  
Sbjct: 87  TLGQVFRKEGVI-SSPLEERARYIYALSQELEQTLSQIDGVVVARVHVVLPERIAPGEPV 145

Query: 169 ARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGD 206
              +A+V I+        S    IR +VA+++P +   D
Sbjct: 146 QPASAAVFIKHRADLEPDSVLPRIRRMVASSIPGMTNAD 184


>gi|222082184|ref|YP_002541549.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Agrobacterium radiobacter K84]
 gi|221726863|gb|ACM29952.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Agrobacterium radiobacter K84]
          Length = 274

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 80/185 (43%), Gaps = 6/185 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVP 86
           +  I+  +    F+++   D L   L+  D     V L  A I   ++        I+V 
Sbjct: 21  VAGILSVLVCAAFLSACSEDVL-TGLDQRDARDAQVLLERAGIRATVTGEKGDVFKIAVD 79

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
            +   +A   L+  GLP     +  ELF     F +T   Q+     A+E ++  T+ ++
Sbjct: 80  ETDHARAIELLSDAGLPRLPHRTMAELFPGD-GFLVTPLEQKARMTYAVEQQLGETLSAL 138

Query: 147 SGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMG 205
            G+ +ARVHIV+P+      I  +  AS +++    +     E   R L+  +V  L   
Sbjct: 139 DGVASARVHIVLPEDNGRGLIKEKARASALLQYRPSANLVDIEMKSRSLLLNSVRGLAYE 198

Query: 206 DVTVL 210
           DV+V+
Sbjct: 199 DVSVV 203


>gi|254706489|ref|ZP_05168317.1| flagellar MS-ring protein [Brucella pinnipedialis M163/99/10]
          Length = 207

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 1/193 (0%)

Query: 368 LTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVS 427
           L            +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V   
Sbjct: 3   LQTAGTTPPPANFVDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAP 62

Query: 428 FMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISS 487
           + D L R   +  NAL  L    L+ + GL  L R  N+  A       ++     P   
Sbjct: 63  WTDTLLRQSGSYANALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFI 122

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
                +       +           +   S +   +   + LRL  MIE++EER A +L+
Sbjct: 123 GGAESVGEGVQAVIGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAAVLK 181

Query: 548 KWARSEIEDRYTQ 560
           +W       R   
Sbjct: 182 QWIHETASGREAD 194


>gi|197121159|ref|YP_002133110.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K]
 gi|196171008|gb|ACG71981.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter sp. K]
          Length = 239

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 10/171 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +       G  + V  +   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAPADAVRARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSA----EAIRHLVAAAVPNLDMGDVTVL 210
           FR        + ++     +   +       +R LVA A   LD   V+V+
Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAAAVSVV 189


>gi|321224033|gb|EFX49096.1| Secretion system apparatus SsaJ [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 229

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L   + N++   L + +ID      ++G ++ V  S    A   L   G P     
Sbjct: 3   LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F       ++   ++       E  I   +  + G++ A+V I +P         
Sbjct: 63  TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNA 120

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
           +  + +V I+       ++    I+ L+  ++P L    +++L
Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 163


>gi|307264867|ref|ZP_07546429.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306920125|gb|EFN50337.1| Flagellar M-ring domain protein [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 250

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 94/305 (30%), Gaps = 58/305 (19%)

Query: 252 FLGVDNFRSAVVAELNMDTQQIREIVYDP---DSKVERSIRLSKDAQRSETSQPESAVTV 308
             G  N        LN D +    I Y P   +        + +  +++  +Q  S+   
Sbjct: 1   MFGPGNVVVRANVTLNFDKKTQDTIEYLPVQGNDNKGIVRSIQELKEKATGTQGGSSPGT 60

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
             N P V+           +  + E   NYEIN    +      K+E +S+AVVVN    
Sbjct: 61  SSNNPPVAST---TGNGTSDYSRTETTINYEINQIKTSLVQAQGKIESISVAVVVN---- 113

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
                    Q   +S   +I  +V+ A G +S     +++  + F ++         +  
Sbjct: 114 ---------QNLNNSMKQQIADLVTKAAGGDSLV--KVSVQGIQFNQD---------LLK 153

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
                   +  +   V+ +   LV   GL  +       +        + + +  PI   
Sbjct: 154 TMQQQAKVSKGVPVYVWAILAALVLGGGLFLIMMRRKKKETSLTTAEQEVLATVEPIEP- 212

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
                                         I+     +   ++  +I+   E   +++R 
Sbjct: 213 ---------------------------IEEIDFSEKDEKKKQIERLIKEKPELVVQVIRT 245

Query: 549 WARSE 553
           W   E
Sbjct: 246 WLNEE 250


>gi|161614174|ref|YP_001588139.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224584080|ref|YP_002637878.1| pathogenicity island lipoprotein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|161363538|gb|ABX67306.1| hypothetical protein SPAB_01916 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224468607|gb|ACN46437.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 229

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L   + N++   L + +ID      ++G ++ V  S    A   L   G P     
Sbjct: 3   LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F       ++   ++       E  I   +  + G++ A+V I +P         
Sbjct: 63  TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNA 120

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
           +  + +V I+       ++    I+ L+  ++P L    +++L
Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 163


>gi|326623470|gb|EGE29815.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 229

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L   + N++   L + +ID      ++G ++ V  S    A   L   G P     
Sbjct: 3   LYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFT 62

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F       ++   ++       E  I   +  + G++ A+V I +P         
Sbjct: 63  TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNA 120

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
           +  + +V I+       ++    I+ L+  ++P L    +++L
Sbjct: 121 SPSSVAVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 163


>gi|218458744|ref|ZP_03498835.1| nodulation protein [Rhizobium etli Kim 5]
          Length = 246

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 6/174 (3%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS---DNGSSISVPSSMVGKARIHL 97
            F+ +   D L   L+  D     V L  A I   +        +I+  S+   +A   L
Sbjct: 2   LFLAACSQDVL-TGLDQRDALDAQVLLERAGISVTMRSEKGGTYAIAAESADHARAIELL 60

Query: 98  AAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV 157
           A  GLP  S  +  ELF   N F +T + Q+     A+E ++A T+  + G+  ARVH+V
Sbjct: 61  AGAGLPRQSFENVAELFP-GNGFLVTPYEQKARMSYAIEQQLAETLSGLDGVATARVHVV 119

Query: 158 MPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
           +P+      I  +  A+ +++    +     +   R ++  ++ +L   DV+V+
Sbjct: 120 LPEENGRGLIKEKARAAAVLQYRPGANLNEIDMKSRSVLVNSIRDLSYEDVSVV 173


>gi|167464169|ref|ZP_02329258.1| flagellar MS-ring protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 272

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 99/312 (31%), Gaps = 45/312 (14%)

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSKVERSIRLSKDAQRSETSQ 301
             LA   G +     VV+ +N D ++ +E +      D    +E S++  + +  S+ + 
Sbjct: 1   NLLAPMYGQNKVVVNVVSTMNFDQKKTKEQLVSAPNQDEQKGLEISVQELQKSASSDGAT 60

Query: 302 PESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAV 361
                    N   V   +         +++ ++  NYE+N  +       Y ++ L+I V
Sbjct: 61  AGGVAGSGTN--DVPGYESTSNSGNSKSEENQKTVNYEVNRITNDIIRAPYVVKDLNITV 118

Query: 362 VVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
            ++   +    G+  +   +++ +  I K   A +G+   + D         ++ ++   
Sbjct: 119 AIDTKSVNGNPGKIENAELLENAMKGIVKTALADSGVEYEQAD---------IDKKVTII 169

Query: 422 GTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILS 481
                S     + +    +      +  L +    + ALRR       ++ E        
Sbjct: 170 PKELQSPSSTTASNLNNYLLYGGIGLAALALIAGTVFALRRRKKNLLEEEEEYITTGQQQ 229

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
               +  +                              N     Q   +L  + +   E 
Sbjct: 230 VEYPTIDIE-----------------------------NVTNDNQVRKQLETLAKKKPEE 260

Query: 542 FAKILRKWARSE 553
           F  +LR W   E
Sbjct: 261 FVNLLRTWLVDE 272


>gi|261313943|ref|ZP_05953140.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10]
 gi|261302969|gb|EEY06466.1| flagellar MS-ring protein FliF [Brucella pinnipedialis M163/99/10]
          Length = 192

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 1/180 (0%)

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
           +D  + +I  +V+ A G+N+ RGD I +T+++FL+    +   V   + D L R   +  
Sbjct: 1   MDQQITKIRDLVATAAGLNTNRGDVINVTAVNFLDPAGADMEPVSAPWTDTLLRQSGSYA 60

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
           NAL  L    L+ + GL  L R  N+  A       ++     P        +       
Sbjct: 61  NALAILAAVGLLIWFGLRPLLRDQNVKPAGTEVAIREAGEVATPNFIGGAESVGEGVQAV 120

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQ 560
           +           +   S +   +   + LRL  MIE++EER A +L++W       R   
Sbjct: 121 IGGPA-AYADQMKTSLSDLRQRMRMPAKLRLEQMIEMDEERVAAVLKQWIHETASGREAD 179


>gi|325526929|gb|EGD04393.1| flagellar MS-ring protein [Burkholderia sp. TJI49]
          Length = 185

 Score =  100 bits (249), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 15/199 (7%)

Query: 355 ERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFL 414
           +RLS+AVVVN   + +  G    Q    + LA+I ++V  A G + +RGD++ + +  F 
Sbjct: 1   KRLSVAVVVNSQPVADAKGHVTMQPLPPAKLAQIEQLVKDAMGYDEKRGDSVNVVNSAFS 60

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
                N+        DI+           +      L       A+RR     +     +
Sbjct: 61  TVPDPNADLPWWRQPDIVEMAKEAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEPAAPAL 120

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHM 534
                                     L +  Q        L      +  +++      +
Sbjct: 121 AAPEDPVALD---------------GLPAPEQAEADDPMLLGFENEKHRYERNLDYARTI 165

Query: 535 IEINEERFAKILRKWARSE 553
              + +  A +++ W   E
Sbjct: 166 ARQDPKIVATVVKNWVSDE 184


>gi|161503496|ref|YP_001570608.1| hypothetical protein SARI_01572 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864843|gb|ABX21466.1| hypothetical protein SARI_01572 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 249

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 73/196 (37%), Gaps = 5/196 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSN 108
           LY  L   + N++   L + +I+      +NG ++ V  S    A   L   G P     
Sbjct: 23  LYRSLPEDEANQMLALLMQHHINAEKKQEENGITLRVEQSQFINAVELLRLNGYPHRQFM 82

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +  ++F       ++   ++       E  I   +  + G++  +V I +P         
Sbjct: 83  TADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVINTKVTIALPIYD-EGSNY 140

Query: 169 ARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL 227
           +  + +V I+       ++    I+ L+  ++P L  G +++L    +     +      
Sbjct: 141 SPSSVAVFIKYSPQVNMEALRIKIKDLIEKSIPGLQYGRISILMQPAEFRMVPDAPARQT 200

Query: 228 GKSLSIVQAIQHEIEM 243
              + ++ A + ++  
Sbjct: 201 FSMMDVISANKEKVVK 216


>gi|229896277|ref|ZP_04511447.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
 gi|229701200|gb|EEO89229.1| Flagellar M-ring protein fliF [Yersinia pestis Pestoides A]
          Length = 115

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++   F  +   L     + L       I + +A   +  SP Y  LY  L   D   I 
Sbjct: 10  NRENTFTMTLARLRANPKIPLLIAAAAAIAIIVALMLWAKSPDYRVLYSNLSDRDGGDIV 69

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
             L++ NI +R +DNG ++ +P+  V + R+ LA QGLP   S
Sbjct: 70  TQLTQLNIPYRFADNGGALLIPAEKVHETRLRLAQQGLPKGGS 112


>gi|254575119|gb|ACT68020.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 255

 Score =   99 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 69/181 (38%), Gaps = 5/181 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
           +  +     +++ + + L   L     N++   L + N+          G +++V  S  
Sbjct: 9   LAVVLFALMLSACNDEKLLFNLTQEQANQVLAVLQQHNVSASKEGTLKAGYTVAVNKSES 68

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   +    LP S+     + F +  +   +   ++   +   E  + ++++ I+ +V
Sbjct: 69  TAALSIINQYQLPWSADVQIAQAFPE-GALVTSPNAEQARVISLQEQRLEQSLRMIAQVV 127

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
            ARVH+  P   +           V+I              I+HL+  +  +L   +++V
Sbjct: 128 NARVHVSYPAFNNDSSRTPTGHVGVIITYKGEIDDNLFIPQIKHLIKNSFYDLRYENISV 187

Query: 210 L 210
           +
Sbjct: 188 V 188


>gi|193061969|ref|ZP_03043065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E22]
 gi|194426282|ref|ZP_03058837.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli B171]
 gi|260845702|ref|YP_003223480.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009]
 gi|260858257|ref|YP_003232148.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368]
 gi|13447711|gb|AAK26710.1|AF200363_18 EscJ [Escherichia coli]
 gi|18034515|gb|AAL57537.1|AF453441_21 EscJ [Escherichia coli]
 gi|17384645|emb|CAC81857.1| EscJ protein [Escherichia coli]
 gi|57434462|emb|CAI43879.1| EscJ protein [Escherichia coli]
 gi|192932189|gb|EDV84787.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E22]
 gi|194415590|gb|EDX31857.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli B171]
 gi|195183203|dbj|BAG66748.1| T3SS structure protein EscJ [Escherichia coli O111:H-]
 gi|254692335|emb|CAR47976.1| EscJ protein [Escherichia coli]
 gi|254692403|emb|CAR48046.1| EscJ protein [Escherichia coli]
 gi|257756906|dbj|BAI28408.1| T3SS structure protein EscJ [Escherichia coli O26:H11 str. 11368]
 gi|257760849|dbj|BAI32346.1| T3SS structure protein EscJ [Escherichia coli O103:H2 str. 12009]
 gi|323153823|gb|EFZ40065.1| hypothetical protein ECEPECA14_4272 [Escherichia coli EPECa14]
 gi|323163015|gb|EFZ48848.1| hypothetical protein ECE128010_0611 [Escherichia coli E128010]
          Length = 190

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGK 92
           F+     +     + LY  L   + N++   L     N+   +  +G+ +ISV      +
Sbjct: 9   FLFVFICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVR 68

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           A   L   G P     +  E+    +    +   +        E +I R +  I G++  
Sbjct: 69  AITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDC 127

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
            V + + +           +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 128 SVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|291562021|emb|CBL40836.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [butyrate-producing bacterium SS3/4]
          Length = 420

 Score = 98.5 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 94/319 (29%), Gaps = 22/319 (6%)

Query: 116 KVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVM---PDMGSFRKIGARPT 172
                  T   +E   +  L+  +   I    G+  A+V I                  +
Sbjct: 4   NNAGIMSTEKDKEKYTLYELQDRLGAQIGLFEGVRDAKVTIAEGGTQKYALDDTQQTDAS 63

Query: 173 ASVMIR--AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKS 230
           ASV++            A AI++L+A AV  ++  +V+V D+   +    E E      +
Sbjct: 64  ASVVVTMDPGQDLTDTKAAAIKNLIARAVKGMNFTNVSVFDAATMMEVGGEDEAGNTAGT 123

Query: 231 ----LSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286
                 +   ++  I  N+ + L    G      +V   LNM       + Y    KV++
Sbjct: 124 GKDVAELTSQVEKSIAGNVRRVLELMYGQGKVAVSVKGTLNMQKLIQETVQYTTPDKVDQ 183

Query: 287 SIRLSKDAQRSETSQPESAVT---------VEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
           + +     +     +   + +                    +       +          
Sbjct: 184 NDKTGLLEKEETAGENTGSTSSGNGGAAGADANADTPRYTGQTGTQAGSDTYSNNSAIRE 243

Query: 338 YEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAE----INKIVS 393
           +  N+       D   LE  ++ V ++    +             + + +        V 
Sbjct: 244 WLYNSTKEQRQIDPGVLENTTVGVTIDTDDTSIADADLVSLVANSAGITQEDAPSKITVI 303

Query: 394 AATGINSRRGDTITITSMD 412
            A    S+  D + +T+  
Sbjct: 304 RALSAASKNTDAVPVTAPA 322


>gi|85058534|ref|YP_454236.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|45504742|gb|AAS66833.1| YsaJ [Sodalis glossinidius]
 gi|84779054|dbj|BAE73831.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 259

 Score = 98.1 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVP 86
           L+   + + A           L   L     N++   L + NI  + S     G +I+VP
Sbjct: 5   LLLTCMVIIAALLTTGCDNTILLNNLSQEQANKVLAVLQQHNIASQKSGSLKEGYAITVP 64

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
            S    A   L    LP+       + F   N+   +   +    +   E  + ++++ I
Sbjct: 65  KSDTTTALSILNQYQLPAKPEVQISQAFP-DNALIASPQAERARMLSLQEQRLEQSLKII 123

Query: 147 SGIVAARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           S +V ARVH+  P   +           S++I              I+ L+   + N+  
Sbjct: 124 SQVVNARVHVSYPLNDNTFITDPPAERVSILITYSGSLNENMFISKIKTLIKNGLANVRF 183

Query: 205 GDVTVL 210
            D++V+
Sbjct: 184 EDISVV 189


>gi|16904094|gb|AAL30751.1|AF435079_1 putative EscJ protein [Escherichia coli]
          Length = 190

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGK 92
           F+     +     + LY  L   + N++   L     N+   +  +G+ +ISV      +
Sbjct: 9   FLFVFICLTVACKEQLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVR 68

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           A   L   G P     +  E+    +    +   +        + +I R +  I G++  
Sbjct: 69  AITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKDQDIERLLSKIPGVIDC 127

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
            V + + +           +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 128 SVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|170766695|ref|ZP_02901148.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia albertii TW07627]
 gi|170124133|gb|EDS93064.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia albertii TW07627]
 gi|315617523|gb|EFU98129.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 190

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ +ISV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|283786642|ref|YP_003366507.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168]
 gi|15723917|gb|AAL06364.1|AF311901_16 EscJ [Citrobacter rodentium]
 gi|282950096|emb|CBG89730.1| T3SS structural protein EscJ [Citrobacter rodentium ICC168]
          Length = 190

 Score = 97.7 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N +   L     N+   +  +G+ +ISV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANLMQALLLSNDVNVSKEMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVTSPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +        S   I++L+  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLIKNSVDDLKLENISVV 181


>gi|284007385|emb|CBA72784.1| Type III secretion bridge between inner and outermembrane
           lipoprotein YscJ,HrcJ,EscJ, PscJ [Arsenophonus nasoniae]
          Length = 263

 Score = 97.3 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 6/197 (3%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQ 100
              +   L   L+ +  N +   L + NID      + +G  I +       A   +   
Sbjct: 16  TGCNQQELLKNLDQNQANEVIALLQQNNIDAYKKESAKSGYIIYIEKEDFIPAVDLINRY 75

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
           GLP        ++F   +    +   ++      +E  +A+++ SI GIV A VHI    
Sbjct: 76  GLPRKPRLEIAQMFPSDS-LVSSPLAEKARLYSGIEQRLAQSLHSIEGIVTAHVHISYEL 134

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT 218
                K   +   S +I+  +     +     I+  +  +V  +   D++V+ +  + + 
Sbjct: 135 NSLENKKEHKYHVSALIKYNDTIKDVNLLINDIKRFLKNSVNGVSYDDISVVTTEMEQIN 194

Query: 219 ANEMERNILGKSLSIVQ 235
             +   N  G + S + 
Sbjct: 195 RLKSISNHQGTTSSFIW 211


>gi|238756004|ref|ZP_04617329.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri
           ATCC 29473]
 gi|238705793|gb|EEP98185.1| Type III secretion system apparatus lipoprotein [Yersinia ruckeri
           ATCC 29473]
          Length = 252

 Score = 97.3 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 72/180 (40%), Gaps = 4/180 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90
           +LF  +   + +    NL  +L+    N +   L +  I     +NG    SI+V  +  
Sbjct: 7   LLFAGSTLLLTACDKQNLLTELDQRQSNEVLATLQQNGIQGTKHENGKLGFSINVAKNDF 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L    LPS  +    + F   +    +   +    +  +E  + ++I +I G+V
Sbjct: 67  IAAVDLLKQYNLPSKDAVEIIQAFPGDS-LVASPQAERTRLLSLIEQRLEQSITTIPGVV 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            ARVH+  P   + +    +  +S++  A +         I+  +  +  +    +V+V+
Sbjct: 126 NARVHVSYPLSTNTKVTQPQSISSLVTYAGSEDTKILMSKIKLFLKNSFSDSTYDNVSVV 185


>gi|18072079|gb|AAL58461.1|AF456768_1 putative EscJ protein [Escherichia coli]
          Length = 190

 Score = 96.9 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ ++SV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|193070396|ref|ZP_03051338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E110019]
 gi|192956335|gb|EDV86796.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli E110019]
          Length = 190

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ ++SV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 138 NQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|15804234|ref|NP_290273.1| hypothetical protein Z5124 [Escherichia coli O157:H7 EDL933]
 gi|15833827|ref|NP_312600.1| EscJ [Escherichia coli O157:H7 str. Sakai]
 gi|168748650|ref|ZP_02773672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753523|ref|ZP_02778530.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759820|ref|ZP_02784827.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766120|ref|ZP_02791127.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168772331|ref|ZP_02797338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168779855|ref|ZP_02804862.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189404719|ref|ZP_02810595.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC869]
 gi|189405721|ref|ZP_02823676.2| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936256|ref|ZP_03081638.1| EscJ [Escherichia coli O157:H7 str. EC4024]
 gi|208805778|ref|ZP_03248115.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813611|ref|ZP_03254940.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821249|ref|ZP_03261569.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209399518|ref|YP_002273170.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4115]
 gi|215488984|ref|YP_002331415.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326602|ref|ZP_03442686.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254795648|ref|YP_003080485.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|260869691|ref|YP_003236093.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128]
 gi|261225792|ref|ZP_05940073.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258837|ref|ZP_05951370.1| T3SS structure protein EscJ [Escherichia coli O157:H7 str. FRIK966]
 gi|291285061|ref|YP_003501879.1| EscJ [Escherichia coli O55:H7 str. CB9615]
 gi|312967942|ref|ZP_07782154.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|12518464|gb|AAG58837.1|AE005596_7 escJ [Escherichia coli O157:H7 str. EDL933]
 gi|2865286|gb|AAC38379.1| EscJ [Escherichia coli]
 gi|3414907|gb|AAC31518.1| L0039 [Escherichia coli]
 gi|13364048|dbj|BAB37996.1| type III secretion system EscJ protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187771787|gb|EDU35631.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016943|gb|EDU55065.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189002607|gb|EDU71593.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358868|gb|EDU77287.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189364584|gb|EDU83003.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369495|gb|EDU87911.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189374615|gb|EDU93031.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC869]
 gi|189378814|gb|EDU97230.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC508]
 gi|195957524|gb|ACG59635.1| type III secretion system protein EscJ [Escherichia coli O157:H7]
 gi|195957583|gb|ACG59693.1| type III secretion system protein EscJ [Escherichia coli]
 gi|195957640|gb|ACG59749.1| EscJ [Escherichia coli]
 gi|208725579|gb|EDZ75180.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734888|gb|EDZ83575.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741372|gb|EDZ89054.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160918|gb|ACI38351.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC4115]
 gi|215267056|emb|CAS11501.1| T3SS structure protein EscJ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322823|gb|EEC31247.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. TW14588]
 gi|221361430|emb|CAX18583.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361487|emb|CAX18658.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361548|emb|CAX18738.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|254595048|gb|ACT74409.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|255348321|gb|ACU09463.1| EscJ protein [Escherichia coli]
 gi|257766047|dbj|BAI37542.1| T3SS structure protein EscJ [Escherichia coli O111:H- str. 11128]
 gi|290764934|gb|ADD58895.1| EscJ [Escherichia coli O55:H7 str. CB9615]
 gi|312287503|gb|EFR15411.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320191253|gb|EFW65903.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC1212]
 gi|320193807|gb|EFW68440.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli WV_060327]
 gi|320201524|gb|EFW76103.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli EC4100B]
 gi|320639364|gb|EFX08979.1| EscJ [Escherichia coli O157:H7 str. G5101]
 gi|320644808|gb|EFX13844.1| EscJ [Escherichia coli O157:H- str. 493-89]
 gi|320650072|gb|EFX18568.1| EscJ [Escherichia coli O157:H- str. H 2687]
 gi|320655419|gb|EFX23354.1| EscJ [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661046|gb|EFX28482.1| EscJ [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666171|gb|EFX33177.1| EscJ [Escherichia coli O157:H7 str. LSU-61]
 gi|323178904|gb|EFZ64480.1| hypothetical protein ECOK1180_2638 [Escherichia coli 1180]
 gi|326337303|gb|EGD61138.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. 1044]
 gi|326341677|gb|EGD65466.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. 1125]
          Length = 190

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ ++SV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|54311610|emb|CAG17525.1| EscJ protein [Escherichia coli]
          Length = 190

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ ++SV      +A   L   G P    
Sbjct: 24  LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVEKEDFVRAITILNNNGFPKKKF 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 84  AN-IEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 137

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 138 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 181


>gi|325522916|gb|EGD01366.1| type III secretion protein SctJ [Burkholderia sp. TJI49]
          Length = 263

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 29/193 (15%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158
           P  S  S  ELF K      T   + +  +      L      T+Q I G+V ARV +V+
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 150

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV-------- 209
           P+           +A+V IR       ++ A  ++ LVA ++  L   +V++        
Sbjct: 151 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSLFLQPAAAR 210

Query: 210 ---LDSTGKLLTA 219
              +D  G  LT 
Sbjct: 211 TTRVDGVGSALTD 223


>gi|194350701|gb|ACF53781.1| HrcJ [Brenneria nigrifluens]
 gi|194350703|gb|ACF53782.1| HrcJ [Brenneria nigrifluens]
 gi|194350705|gb|ACF53783.1| HrcJ [Brenneria alni]
          Length = 146

 Score = 95.8 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I     +   G ++ + +  + +A   L A GLP  S  +  E+F K
Sbjct: 1   DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146


>gi|212711714|ref|ZP_03319842.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM
           30120]
 gi|212685816|gb|EEB45344.1| hypothetical protein PROVALCAL_02789 [Providencia alcalifaciens DSM
           30120]
          Length = 240

 Score = 95.4 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 4/178 (2%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGK 92
            ++    +       L   L     N +   L E  +D    + S NG SI V  +    
Sbjct: 1   MISFIGLLLGCDNQLLLSNLSQRQSNEVLAILQEHGVDANRKQDSKNGDSIRVAPNDFVI 60

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAA 152
           A   L    LPS       + F   +    +   +    +  +E  + +++ +I  +V A
Sbjct: 61  AVDLLRQYNLPSKDPVEIIDAFPGDS-LVASPQAERTRLLSLIEQRLEQSLLTIPNVVNA 119

Query: 153 RVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           RVH+  P  G+     A+  +S++  + N         I+  +  +       +V+V+
Sbjct: 120 RVHVSYPISGNGPVKQAQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 177


>gi|194350707|gb|ACF53784.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 146

 Score = 95.4 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I     +   G ++ + +  + +A   L A GLP  S  +  E+F K
Sbjct: 1   DANEAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -SGVISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSAEA-IRHLVAAAVPNL 202
           I+          E  IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEQRIRRMVASSIPGL 146


>gi|310923250|emb|CBW54716.1| YscJ, lipoprotein, signal peptidase II cleavage site LFLTG-CKVDL,
           length difference in automated annotation (should start
           at 35114 gtg/V, point mutation here from M to V), PMID
           18227263 [Yersinia enterocolitica (type O:8)]
 gi|318608181|emb|CBY78155.1| type III secretion bridge between inner and outermembrane
           lipoprotein (YscJ,HrcJ,EscJ, PscJ) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 210

 Score = 95.4 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 6/153 (3%)

Query: 63  ISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
           +   L +  +      +      + V  S V +A   L  +G P  S ++  ++F K   
Sbjct: 1   MLALLRQEGLSADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKD-G 59

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASVMIR 178
              +   +      A   EI+RT+  I G++ ARVH+V+P +  +  K G   +ASV I+
Sbjct: 60  LISSPIEELARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIK 119

Query: 179 AINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
                 + +    I+ LV  ++  L    ++V+
Sbjct: 120 HAADIQFDTYIPQIKQLVNNSIEGLAYDRISVI 152


>gi|115358974|ref|YP_776112.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria AMMD]
 gi|115284262|gb|ABI89778.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria AMMD]
          Length = 309

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 18/172 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L +A I     ++           +SV    +  A   L A GL
Sbjct: 50  LYSGLSERDANQMVAVLGDAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 109

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158
           P  S  S  ELF K      T   + +  +      L      T+Q I G+V ARV +V+
Sbjct: 110 PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 164

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
           P+           +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 165 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 216


>gi|172063766|ref|YP_001811417.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia ambifaria MC40-6]
 gi|171996283|gb|ACB67201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria MC40-6]
          Length = 295

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 18/172 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGSS--------ISVPSSMVGKARIHLAAQGL 102
           LY  L   D N++   L  A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANQMVAVLGAAGISASKDNDARDTSDRNAWLVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158
           P  S  S  ELF K      T   + +  +      L      T+Q I G+V ARV +V+
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 150

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
           P+           +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 151 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|238757855|ref|ZP_04619037.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC
           35236]
 gi|238703840|gb|EEP96375.1| Secretion system apparatus lipoprotein ssaJ [Yersinia aldovae ATCC
           35236]
          Length = 233

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 6/180 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSSISVPSSMVG 91
           ML  A    +      +LY  L   D N++   L + NID   ++   G ++ V  +   
Sbjct: 1   MLISALALLLTGCR-VDLYSALPEEDANQMLAILMQHNIDADKQLVAGGVTLRVEKAQFI 59

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            A   L   G P  S  S   +F       ++   ++   +   E  I   +  + G+V 
Sbjct: 60  NAVELLRLNGFPRRSYISADTMFPPNQ-LVVSPAEEQQKILFLKEQRIENMLSQMDGVVH 118

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
             V I           G   + +V I+        +    I++LV  ++P +    +++L
Sbjct: 119 VDVTIASSGPDEEGATGQ-TSVAVFIKFWAQVNLVALRVQIKNLVEKSIPGVQQDQISIL 177


>gi|7025353|gb|AAF35844.1|AF220002_1 flagellar M ring protein FliF [Rhodospirillum centenum]
          Length = 132

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           F ++      LY  L+ ++  RI   L    + +++S  G +I +P   + + R+ LA Q
Sbjct: 19  FGLSRAPMGLLYAGLDDAEAGRILTQLQSMKVPYQVSGTGGAILLPQDQIARTRMLLAQQ 78

Query: 101 GLPSSSSNSGYELFDKVNS 119
           GLPS+   +GYELFD+  +
Sbjct: 79  GLPSAGG-AGYELFDEQGA 96


>gi|259908651|ref|YP_002649007.1| Type III secretion system [Erwinia pyrifoliae Ep1/96]
 gi|224964273|emb|CAX55780.1| Type III secretion system [Erwinia pyrifoliae Ep1/96]
 gi|283478623|emb|CAY74539.1| Lipoprotein PrgK precursor [Erwinia pyrifoliae DSM 12163]
          Length = 253

 Score = 94.6 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 76/182 (41%), Gaps = 5/182 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89
           I+  + +   ++  + + L   L     N++   L + NI  + S    +G +ISV    
Sbjct: 8   ILFVLISAGSISGCNNEKLLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQE 67

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   +    LP S+     + F + ++   +   ++   +  LE  + ++++ I+ +
Sbjct: 68  NTAALSIINQYQLPWSAEIQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQV 126

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
           V ARVHI  P + S +         V+I              I+ L+  ++ ++   +++
Sbjct: 127 VNARVHISYPGVRSDKGNKTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENIS 186

Query: 209 VL 210
           V+
Sbjct: 187 VV 188


>gi|86157134|ref|YP_463919.1| secretory protein YscJ/FliF [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773645|gb|ABC80482.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score = 94.6 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 10/171 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRIS-----DNGSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +     D G  + V  +   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADGGWEVRVAPADAARARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQ-RPAGFDAVLAKGSMVPTATEEHAMYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSA----EAIRHLVAAAVPNLDMGDVTVL 210
           FR        + ++     +   +       +R LVA A   LD G V+V+
Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAGAVSVV 189


>gi|194350717|gb|ACF53789.1| HrcJ [Pectobacterium carotovorum subsp. odoriferum]
          Length = 146

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I     +   G ++ + +  + +A   L A GLP  S  +  E+F K
Sbjct: 1   DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 61  -SGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146


>gi|194350689|gb|ACF53775.1| HrcJ [Erwinia rhapontici]
          Length = 146

 Score = 93.8 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 59  DVNRISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
           D N     L    I     +   G ++ + +  + +A   L A GLP  S  +  E+F +
Sbjct: 1   DANEAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVF-Q 59

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM 176
            +    T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V 
Sbjct: 60  RSGVISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVF 119

Query: 177 IRAINPSVYKSA-EAIRHLVAAAVPNL 202
           I+             IR +VA+++P L
Sbjct: 120 IKYRAELEPDGMEPRIRRMVASSIPGL 146


>gi|310767451|gb|ADP12401.1| Type III secretion system [Erwinia sp. Ejp617]
          Length = 253

 Score = 93.4 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 76/182 (41%), Gaps = 5/182 (2%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89
           I+  + +   ++  + + L   L     N++   L + NI  + S    +G +ISV    
Sbjct: 8   ILFVLISAGSISGCNNEKLLENLTQEQTNQVLAILQQHNISAQKSGAVKDGFAISVSQQE 67

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
              A   +    LP S+     + F + ++   +   ++   +  LE  + ++++ I+ +
Sbjct: 68  NTAALSIINQYQLPWSAEIQIAQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRIINQV 126

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
           V ARVHI  P + S +         V+I              I+ L+  ++ ++   +++
Sbjct: 127 VNARVHISYPGVRSDKGNKTLSHVGVLISYKGEIDDNLFISQIKSLIKNSLSDVRYENIS 186

Query: 209 VL 210
           V+
Sbjct: 187 VV 188


>gi|134294015|ref|YP_001117751.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia vietnamiensis G4]
 gi|134137172|gb|ABO58286.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia vietnamiensis G4]
          Length = 297

 Score = 93.1 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 18/172 (10%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNG--------SSISVPSSMVGKARIHLAAQGL 102
           LY  L   D N +   L +A I     ++           +SV    +  A   L A GL
Sbjct: 36  LYSGLSERDANEMVAVLGDAGIGASKDNDARDTSDRNAWQVSVADGDMQSALTVLQANGL 95

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVR----ALEGEIARTIQSISGIVAARVHIVM 158
           P  S  S  ELF K      T   + +  +      L      T+Q I G+V ARV +V+
Sbjct: 96  PKPSYASLGELFQK-QGLVSTPAEERVRYLYGVSQDLSR----TLQDIEGVVVARVQVVI 150

Query: 159 PDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
           P+           +A+V IR       ++ A  ++ LVA ++  L   +V++
Sbjct: 151 PENDPLADKIKPSSAAVYIRYRPGVDLRAMAPMVKDLVAHSIEGLQYDNVSL 202


>gi|115377828|ref|ZP_01465016.1| bcscJ [Stigmatella aurantiaca DW4/3-1]
 gi|310820299|ref|YP_003952657.1| type III secretion apparatus lipoprotein, yscj/hrcj family
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365160|gb|EAU64207.1| bcscJ [Stigmatella aurantiaca DW4/3-1]
 gi|309393371|gb|ADO70830.1| Type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 269

 Score = 93.1 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNG------SSISVPSSMVGKARIHLAAQGLPS 104
           L   L   D N I V LS+  I       G       SI VP +   +A   L A  LP 
Sbjct: 25  LQHGLTEQDANEIYVLLSKNGISAVKLKEGEGQDVQFSIQVPKADAAQAAELLRANSLPR 84

Query: 105 SSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164
                G+  F K  S   T+  +    ++A+ GE++  +  I G++ + V + +P+    
Sbjct: 85  P-MEKGFNHFAK-GSMVPTAAEERAMMLKAIAGEVSNALNKIDGVLESNVIVNIPENNDL 142

Query: 165 --RKIGARPTASVMIRAINPSV---YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
              +    P+ASVMIR               ++  VA+AV  L    VTV      LLT 
Sbjct: 143 TQPENKPMPSASVMIRYRPSLEGKAPVEEPQVKQFVASAVQELKPEAVTV------LLTP 196

Query: 220 NEMERNILGKSLSIVQAIQHEIEMNINKALAAFLG 254
             +          +       +           +G
Sbjct: 197 ALVSSAETSPESRLQDVFGMRMTAASASQFRILVG 231


>gi|218508171|ref|ZP_03506049.1| flagellar MS-ring protein [Rhizobium etli Brasil 5]
          Length = 92

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/93 (52%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           +IL  V  + I + +AA  FVN P  + LYV L+  D+N+IS+AL+EANI+F++  +G+S
Sbjct: 1   MILGGVGALSIAIILAAALFVNKPAQETLYVGLDAPDLNQISMALAEANINFQVGTDGAS 60

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFD 115
           ISVP+ M GKAR+ LA +GLP +S+N+GYELFD
Sbjct: 61  ISVPAGMTGKARLMLAERGLP-NSANAGYELFD 92


>gi|226313069|ref|YP_002772963.1| flagellar M-ring protein [Brevibacillus brevis NBRC 100599]
 gi|226096017|dbj|BAH44459.1| probable flagellar M-ring protein [Brevibacillus brevis NBRC
           100599]
          Length = 298

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 88/330 (26%), Gaps = 42/330 (12%)

Query: 229 KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIV-----YDPDSK 283
           +  +I   ++ +I+ N+   L   +G D        ++N D +   E +      + +  
Sbjct: 6   QQETIKADVEKKIQQNLYNLLGTIMGRDKVIVHTFLKMNFDKENRVENIVEAPDKENNEG 65

Query: 284 VERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTK 343
           +  S +    A   +   P        N         P   S    ++  +  N E+N  
Sbjct: 66  LIISSQKLSKAFSGQGQPPGGIAGTNNNAVTNYPGATPQG-SNSQYEELNDTINREVNRI 124

Query: 344 SIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRG 403
           +   T   YK+E ++I V V            A      + L  I +++           
Sbjct: 125 TRNVTSSPYKIEDITINVGV---------EPPAGGTLDAATLESIKQVLRN--------- 166

Query: 404 DTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRL 463
               +  +   +     S T     + +L R F+           +  V +         
Sbjct: 167 ----VVRVTLSDQVTDLSDTELDKHISVLPRQFSGKAEIEDSSALSPAVLWTV------- 215

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                   G            +    +      +   L      + +             
Sbjct: 216 -------GGIAVLALAAVAFLVYRRRSQAKQQQEEEELPDLLPPLNAGEIPDLIYQEDGD 268

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
                 +L  +     + F  +LR W   +
Sbjct: 269 QVVVRKQLEKLARSKPDEFVVLLRTWLAED 298


>gi|194350681|gb|ACF53771.1| HrcJ [Erwinia amylovora]
          Length = 120

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + V ++ + +A   L A GLP  +  +  E+F K      T   +    + AL  E+  T
Sbjct: 1   VLVDAAELNRAVHILDAAGLPRPARTNLGEVFQKNGVI-STPLEERARYIYALSQEVEST 59

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPN 201
           +  I G++ ARVH+V+P+  +  +     +A+V I+             IR +VA+++P 
Sbjct: 60  LSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKYRPDLDPDVIEPRIRRMVASSLPG 119

Query: 202 L 202
           L
Sbjct: 120 L 120


>gi|268592388|ref|ZP_06126609.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rettgeri DSM 1131]
 gi|291312174|gb|EFE52627.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rettgeri DSM 1131]
          Length = 249

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 68/179 (37%), Gaps = 4/179 (2%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVG 91
           + +    F+ +     L  +L     N +   L E  ++    + + NG SI V  S   
Sbjct: 8   ILIGFISFLAACDNQLLLSQLSQRQSNEVLAILQEHGVEATRKQDNKNGDSIRVQPSDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            A   L    LPS       + F   +    +   +    +  +E  + +++ +I  I+ 
Sbjct: 68  IAVDLLRQYNLPSKEPIEIIQAFPGDS-LVASPQAERTRLLSLIEQRLEQSLLTIPDIIN 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           ARVH+  P  G+      +  +S++  + +         I+  +  +    +  +V+V+
Sbjct: 127 ARVHVSYPLNGNNPTKQIQNVSSLVTYSGSEDPQMMMHKIKLFLTNSFAEANYDNVSVV 185


>gi|123443740|ref|YP_001007711.1| type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|8996043|gb|AAF82342.1|AF005744_21 YsaJ [Yersinia enterocolitica]
 gi|122090701|emb|CAL13577.1| type III secretion system apparatus lipoprotein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 247

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 4/179 (2%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVG 91
           L ++A + ++      L  +L     N +   L E  ++    +NG   +SI V  S   
Sbjct: 8   LVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            A   L    LPS  S    + F   +    +   +    +  +E  + +++ +I G+V 
Sbjct: 68  TAVDLLRLYNLPSKESVEIIQAFPGDS-LVASPQAERSRLLSLIEQRLEQSLLTIPGVVN 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           ARVH+  P   + R    +  +S++  A N         I+  +  +       +V+V+
Sbjct: 127 ARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185


>gi|238898342|ref|YP_002924023.1| type III needle complex inner membrane lipoprotein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466101|gb|ACQ67875.1| type III needle complex inner membrane lipoprotein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 249

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 12/192 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +S  L   NI  + +D    G SISV       A   +    LPS   
Sbjct: 24  LLKGLDQQQANEVSALLLRHNIPAQKTDQLKEGYSISVNPEDFVAAVGLIKTYNLPSKPR 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F   +    +   ++      +E  + +++QS+ GIV ARVH+           
Sbjct: 84  VEISQMFPGDS-LISSPRQEKARLYSGIEQRLEQSLQSMRGIVTARVHVSYDLDSGEGGR 142

Query: 168 GARP-TASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
                  S ++              ++  +  +  +LD  +++V+      L+     ++
Sbjct: 143 KTPAIHLSSLVNHDQGMDTSLLIGDVKRFLKNSFNDLDYENISVI------LSEQAPMQH 196

Query: 226 ILGKSLSIVQAI 237
                 +     
Sbjct: 197 QAPVQKAAQVNY 208


>gi|15088593|gb|AAK84104.1|AF369954_2 YsaJ [Yersinia enterocolitica]
          Length = 247

 Score = 91.9 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 4/179 (2%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVG 91
           L ++A + ++      L  +L     N +   L E  ++    +NG   +SI V  S   
Sbjct: 8   LVISAIWLLSGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            A   L    LPS  S    + F   +    +   +    +  +E  + +++ +I G+V 
Sbjct: 68  TAVDLLRLYNLPSQESVEHIQAFPGDS-LVASPQAERSRLLSLIEQRLEQSLLTIPGVVN 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           ARVH+  P   + R    +  +S++  A N         I+  +  +       +V+V+
Sbjct: 127 ARVHVSYPLNSNSRVKEPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185


>gi|308126335|ref|ZP_07663715.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ4037]
 gi|308110706|gb|EFO48246.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family [Vibrio
           parahaemolyticus AQ4037]
          Length = 190

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 84  SVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTI 143
            V SS +  A   L  +G P    ++  E+F K +    +   +    V A   E++ T+
Sbjct: 2   MVDSSQIAFAVDALKRKGYPREQFSTLKEVFPKDD-LISSPLAERARLVYAKSQELSSTL 60

Query: 144 QSISGIVAARVHIVMPDMGSFRKIGA-RPTASVMIRAINPSVYKS-AEAIRHLVAAAVPN 201
             I G++ ARVH+V+ D            +ASV I+        S    I+ LV  ++  
Sbjct: 61  SQIDGVLVARVHVVLEDQDLRPGERPTPASASVFIKHAADVALDSYVPQIKLLVNNSIEG 120

Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           L+   ++V+            E  +  +S      +  ++       L   L
Sbjct: 121 LNYDRISVV-------MVPSSEVRVTTQSNQFKSILSVQVTKETANHLIGIL 165


>gi|188534048|ref|YP_001907845.1| Type III secretion system [Erwinia tasmaniensis Et1/99]
 gi|188029090|emb|CAO96959.1| Type III secretion system [Erwinia tasmaniensis Et1/99]
          Length = 259

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 6/181 (3%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMVG 91
             +   F + +   + L   L     N++   L + NI    S N   G +I V      
Sbjct: 10  FIILTAFLLAACDNERLLENLTQDQANQVLAILQQHNISANKSGNLKAGYTIQVDEIENT 69

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            A   ++   LP  +     + F    +   +   +++  +  LE  + +++++I+ +V 
Sbjct: 70  AALSIISQYQLPWPADIQIGQAFP-DGALVASPNAEQVRVLSLLEQRLGQSLRTIAQVVN 128

Query: 152 ARVHIVMPDMGSFRKIGARP-TASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTV 209
           ARVHI  P + +            V+I              ++ L+  ++ ++   +++V
Sbjct: 129 ARVHISYPPLKNGMADKTLTNHVGVLISYKGDINQSLFIPQVKSLIKNSLDDIKYENISV 188

Query: 210 L 210
           +
Sbjct: 189 V 189


>gi|108759625|ref|YP_633790.1| YscJ/FliF family type III secretion lipoprotein [Myxococcus xanthus
           DK 1622]
 gi|108463505|gb|ABF88690.1| type III secretion lipoprotein, YscJ/FliF family [Myxococcus
           xanthus DK 1622]
          Length = 267

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 10/208 (4%)

Query: 54  KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108
            L+    N +   L E  +D R           SI V       A   L+  GLP     
Sbjct: 27  GLDERQANELQSVLVERGLDARKVPEAGKKPTWSIEVADEHASDAVRILSELGLPRPKEE 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
            G ++F        T   + + RVR +E  + +T+QS+ G++ ARVH+V+P      +  
Sbjct: 87  VGCDVF-GGGGLVRTPVEESVCRVRVMERSLEKTLQSVEGVLLARVHLVVPAPPRVGQAP 145

Query: 169 ARPTASVMIRAIN---PSVYKSAEAIRHLVAAAVPNLDMGDVT-VLDSTGKLLTANEMER 224
               AS M+R        V +S+E ++ L+A  V  L    V+ ++D     + A     
Sbjct: 146 GPSKASAMLRVAPGNAARVRQSSETLKVLLAGGVEGLSPEAVSLLVDEVSTRVEAPTEVG 205

Query: 225 NILGKSLSIVQAIQHEIEMNINKALAAF 252
                 L  + A+   +   ++ AL   
Sbjct: 206 VSPLTRLRALLAVLGLMVTGLSVALVLV 233


>gi|194350709|gb|ACF53785.1| HrcJ [Pectobacterium carotovorum subsp. carotovorum]
          Length = 143

 Score = 91.1 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 62  RISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
                L    I     +   G ++ + +  + +A   L A GLP  S  +  E+F K + 
Sbjct: 1   EAISMLGRYQIGAEKRVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SG 59

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
              T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+ 
Sbjct: 60  VISTPLEERARYIYALSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKY 119

Query: 180 INPSVYKSAEA-IRHLVAAAVPNL 202
                    E  IR +VA+++P L
Sbjct: 120 RAELEPDGMEQRIRRMVASSIPGL 143


>gi|161502085|ref|YP_001569197.1| hypothetical protein SARI_00102 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863432|gb|ABX20055.1| hypothetical protein SARI_00102 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 252

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 75/225 (33%), Gaps = 12/225 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93
                 +      +L   L+    N +   L   NI+  +I     G SI+V       A
Sbjct: 9   FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              +    LP        ++F   +    +   ++     A+E  + +++Q++ G+++AR
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211
           VHI    D G   +       S +      S        I+  +  +  ++D  +++V+ 
Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVD 256
                L+     +     +     +      + I    A   G  
Sbjct: 187 -----LSERSDAQLQAPGTPVKRDSFATSWIVLIILLSAMLAGFG 226


>gi|194350687|gb|ACF53774.1| HrcJ [Erwinia rhapontici]
          Length = 144

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 4/144 (2%)

Query: 62  RISVALSEANIDFR--ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNS 119
                L    I     +   G ++ + +  + +A   L A GLP  S  +  E+F K + 
Sbjct: 2   EAISMLGRYQIGAEKRVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SG 60

Query: 120 FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
              T   +    + AL  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+ 
Sbjct: 61  VISTPLEERARYIYALSQEVEATLAQIDGVMVARVHVVLPERIAPGEPVQPASAAVFIKY 120

Query: 180 INPSVYKSA-EAIRHLVAAAVPNL 202
                       IR +VA+++P L
Sbjct: 121 RAELEPDGMEPRIRRMVASSIPGL 144


>gi|238796123|ref|ZP_04639634.1| Type III secretion system apparatus lipoprotein [Yersinia
           mollaretii ATCC 43969]
 gi|238720068|gb|EEQ11873.1| Type III secretion system apparatus lipoprotein [Yersinia
           mollaretii ATCC 43969]
          Length = 251

 Score = 90.7 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 6/180 (3%)

Query: 35  LFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVG 91
           L +A    ++      L  +L     N +   L E  ++    DNG   SSI V  S   
Sbjct: 8   LIIAVLGLLSGCDNQTLLTELSQRQGNEVLAVLQENGVEGTRRDNGKLGSSIKVARSDFV 67

Query: 92  KARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVA 151
            A   L    LPS       + F   +    +   +    +  +E  + +++ +I G+V 
Sbjct: 68  TAVDLLRLYNLPSKDPVEIIQAFPGDS-LVASPQAERSRLLSLIEQRLQQSLLTIPGVVN 126

Query: 152 ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
           ARVH+  P   +  ++      S ++        K     I+  +  +       +V+V+
Sbjct: 127 ARVHVSYPLNSNN-RVKQLQQVSSLVTYAGNEDPKQMMNKIKLFLTNSFTETSYDNVSVV 185


>gi|313650159|gb|EFS14572.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T]
 gi|332756093|gb|EGJ86446.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70]
 gi|332757293|gb|EGJ87630.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71]
 gi|332757503|gb|EGJ87838.1| flagellar M-ring protein domain protein [Shigella flexneri K-671]
 gi|332766675|gb|EGJ96879.1| flagellar M-ring family protein [Shigella flexneri 2930-71]
 gi|333003355|gb|EGK22901.1| flagellar M-ring protein domain protein [Shigella flexneri K-218]
 gi|333017575|gb|EGK36887.1| flagellar M-ring protein domain protein [Shigella flexneri K-304]
          Length = 205

 Score = 90.4 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 8/157 (5%)

Query: 293 DAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
            + +   +      T   N  +   +      S   + ++ E SNYE++     T  +  
Sbjct: 1   MSNQPAPANNAPISTPPTNQNNRQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVG 60

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  
Sbjct: 61  DVQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEALTREAMGFSEKRGDSLNVVNSP 116

Query: 413 FLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT 449
           F  +                      ++ A  +L+  
Sbjct: 117 FNSSDESGGALP----FWQQQVFIDQLLAAGRWLLVA 149


>gi|197249815|ref|YP_002147769.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197213518|gb|ACH50915.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 252

 Score = 90.4 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93
                 +      +L   L+    N +   L   NI+  +I     G SI+V       A
Sbjct: 9   FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              +    LP        ++F   +    +   ++     A+E  + +++Q++ G+++AR
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211
           VHI    D G   +       S +      S        I+  +  +  ++D  +++V+ 
Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241
                L+     +     +     +     
Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211


>gi|312172181|emb|CBX80438.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158]
          Length = 230

 Score = 90.0 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 73/186 (39%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVP 86
           LV I   + +   +++ +   L   L     N++   L + NI  + S     G +I++ 
Sbjct: 5   LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                 A   +    LP S+     + F + ++   +   ++   +  LE  + ++++ I
Sbjct: 65  QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123

Query: 147 SGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           + +V ARVHI  P          A     V+I              I+  +  ++ ++  
Sbjct: 124 NQVVNARVHISYPGLRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLNDVRY 183

Query: 205 GDVTVL 210
            +++V+
Sbjct: 184 ENISVV 189


>gi|16766177|ref|NP_461792.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56414823|ref|YP_151898.1| pathogenicity island 1 effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181373|ref|YP_217790.1| cell invasion protein; lipoprotein, may link inner and outer
           membranes [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161615781|ref|YP_001589746.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550282|ref|ZP_02344039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167994182|ref|ZP_02575274.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168230939|ref|ZP_02655997.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168235909|ref|ZP_02660967.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242607|ref|ZP_02667539.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262008|ref|ZP_02683981.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463996|ref|ZP_02697913.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168820434|ref|ZP_02832434.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194446696|ref|YP_002042114.1| type III secretion apparatus lipoprotein YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194451609|ref|YP_002046834.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194472324|ref|ZP_03078308.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194737310|ref|YP_002115824.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262326|ref|ZP_03162400.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197363751|ref|YP_002143388.1| pathogenicity island 1 effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198244869|ref|YP_002216842.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388692|ref|ZP_03215304.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928364|ref|ZP_03219564.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205353815|ref|YP_002227616.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858134|ref|YP_002244785.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584649|ref|YP_002638447.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909638|ref|ZP_04653475.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|1172615|sp|P41786|PRGK_SALTY RecName: Full=Lipoprotein prgK; Flags: Precursor
 gi|717103|gb|AAB60191.1| PrgK protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421418|gb|AAL21751.1| cell invasion protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56129080|gb|AAV78586.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129006|gb|AAX66709.1| cell invasion protein; lipoprotein, may link inner and outer
           membranes [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365145|gb|ABX68913.1| hypothetical protein SPAB_03572 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405359|gb|ACF65581.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194409913|gb|ACF70132.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194458688|gb|EDX47527.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194712812|gb|ACF92033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195633338|gb|EDX51752.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197095228|emb|CAR60779.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197240581|gb|EDY23201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197290699|gb|EDY30053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939385|gb|ACH76718.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199605790|gb|EDZ04335.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322686|gb|EDZ07883.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205273596|emb|CAR38583.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324687|gb|EDZ12526.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205327955|gb|EDZ14719.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205334572|gb|EDZ21336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205338256|gb|EDZ25020.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205342832|gb|EDZ29596.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349248|gb|EDZ35879.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206709937|emb|CAR34291.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469176|gb|ACN47006.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261248007|emb|CBG25840.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994999|gb|ACY89884.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159431|emb|CBW18949.1| type III secretion system apparatus [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913889|dbj|BAJ37863.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087276|emb|CBY97041.1| Lipoprotein prgK Flags: Precursor [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223420|gb|EFX48486.1| Type III secretion bridge between inner and outermembrane
           lipoprotein YscJ,HrcJ,EscJ, PscJ [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614310|gb|EFY11241.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621625|gb|EFY18478.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624486|gb|EFY21319.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628817|gb|EFY25600.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633456|gb|EFY30198.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635968|gb|EFY32676.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639676|gb|EFY36361.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646857|gb|EFY43360.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650626|gb|EFY47031.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654761|gb|EFY51080.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658981|gb|EFY55234.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664452|gb|EFY60646.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668299|gb|EFY64456.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673721|gb|EFY69822.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677782|gb|EFY73845.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681388|gb|EFY77420.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683790|gb|EFY79800.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715857|gb|EFZ07428.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131223|gb|ADX18653.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193821|gb|EFZ79024.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200291|gb|EFZ85373.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203206|gb|EFZ88235.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205547|gb|EFZ90512.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210058|gb|EFZ94961.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216361|gb|EGA01088.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221108|gb|EGA05539.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226930|gb|EGA11112.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230786|gb|EGA14904.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234863|gb|EGA18949.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238902|gb|EGA22952.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241602|gb|EGA25633.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248251|gb|EGA32187.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251165|gb|EGA35038.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256049|gb|EGA39787.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263183|gb|EGA46721.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264313|gb|EGA47819.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271139|gb|EGA54567.1| type III secretion system lipoprotein PrgK [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624602|gb|EGE30947.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628923|gb|EGE35266.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989743|gb|AEF08726.1| needle complex inner membrane lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 252

 Score = 90.0 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93
                 +      +L   L+    N +   L   NI+  +I     G SI+V       A
Sbjct: 9   FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              +    LP        ++F   +    +   ++     A+E  + +++Q++ G+++AR
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211
           VHI    D G   +       S +      S        I+  +  +  ++D  +++V+ 
Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241
                L+     +     +     +     
Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211


>gi|194350715|gb|ACF53788.1| HrcJ [Pectobacterium atrosepticum SCRI1043]
          Length = 133

 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K +    T   +    + A
Sbjct: 6   RVDKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 64

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193
           L  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR 
Sbjct: 65  LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 124

Query: 194 LVAAAVPNL 202
           +VA+++P L
Sbjct: 125 MVASSIPGL 133


>gi|292488055|ref|YP_003530932.1| lipoprotein PrgK [Erwinia amylovora CFBP1430]
 gi|292899266|ref|YP_003538635.1| type III secretion system lipoprotein [Erwinia amylovora ATCC
           49946]
 gi|291199114|emb|CBJ46227.1| type III secretion system lipoprotein [Erwinia amylovora ATCC
           49946]
 gi|291553479|emb|CBA20524.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430]
          Length = 259

 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 73/186 (39%), Gaps = 6/186 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVP 86
           LV I   + +   +++ +   L   L     N++   L + NI  + S     G +I++ 
Sbjct: 5   LVHIFFVIISAGLLSACNNQKLLENLTQEQANQVLAILLQHNISAQKSGAAKEGYAINIS 64

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                 A   +    LP S+     + F + ++   +   ++   +  LE  + ++++ I
Sbjct: 65  QQENTVALSIINQYQLPWSADIEIGQAFPE-SALVASPNAEQTRVLSLLEQRLGQSLRVI 123

Query: 147 SGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDM 204
           + +V ARVHI  P          A     V+I              I+  +  ++ ++  
Sbjct: 124 NQVVNARVHISYPGFRSDKGNKTAVNHVGVLISYKGDIDDNLFISQIKSFIKNSLNDVRY 183

Query: 205 GDVTVL 210
            +++V+
Sbjct: 184 ENISVV 189


>gi|183600567|ref|ZP_02962060.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827]
 gi|188019844|gb|EDU57884.1| hypothetical protein PROSTU_04153 [Providencia stuartii ATCC 25827]
          Length = 253

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 4/180 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
           ++ +     +       L   L     N +   L E  ++     +   G SI V     
Sbjct: 7   LILITFVGLLAGCDNQLLLSHLSQRQSNEVLAILQEHGVEASRKQDNKQGDSIKVSPRDF 66

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L    LPS       + F   +    +   +    +  +E  + +++ +I  +V
Sbjct: 67  VIAVDLLRQYNLPSKDPVEIIQAFPGDS-LVASPQAERTRLLSLIEQRLEQSLLTIPDVV 125

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
            ARVH+  P  G+      +  +S++  + N         I+  + ++    +  +V+V+
Sbjct: 126 NARVHVSYPLNGNTPTKQTQKVSSLVTYSGNEDPKLMMNKIKLFLTSSFAETNYDNVSVV 185


>gi|71042041|pdb|1YJ7|A Chain A, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
 gi|71042042|pdb|1YJ7|B Chain B, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
 gi|71042043|pdb|1YJ7|C Chain C, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
 gi|71042044|pdb|1YJ7|D Chain D, Crystal Structure Of Enteropathogenic E.Coli (Epec) Type
           Iii Secretion System Protein Escj
          Length = 171

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 10/164 (6%)

Query: 51  LYVKLEVSDVNRISVALSEA--NIDFRISDNGS-SISVPSSMVGKARIHLAAQGLPSSSS 107
           LY  L   + N++   L     N+   +  +G+ ++SV ++   +A   L   G P    
Sbjct: 5   LYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKKF 64

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
            +  E+    +    +   +        E +I R +  I G++   V + + +       
Sbjct: 65  -ADIEVIFPPSQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN-----E 118

Query: 168 GARPTASVMIRAINPSVY-KSAEAIRHLVAAAVPNLDMGDVTVL 210
               +A+V++ +        S   I++LV  +V +L + +++V+
Sbjct: 119 SQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVV 162


>gi|312972926|ref|ZP_07787099.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|62085073|gb|AAX62937.1| putative type III secretion apparatus lipoprotein [Escherichia
           coli]
 gi|310332868|gb|EFQ00082.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|323941625|gb|EGB37805.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli E482]
 gi|332344751|gb|AEE58085.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 244

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GI+++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQWLEQSLKIMDGIISSRVHVSYDVDN 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|16761648|ref|NP_457265.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143132|ref|NP_806474.1| pathogenicity island 1 effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213417664|ref|ZP_03350792.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425726|ref|ZP_03358476.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213580253|ref|ZP_03362079.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650551|ref|ZP_03380604.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855142|ref|ZP_03383382.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289823852|ref|ZP_06543458.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25317961|pir||AC0849 pathogenicity 1 island effector protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503949|emb|CAD05978.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138765|gb|AAO70334.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 252

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93
                 +      +L   L+    N +   L   NI+  +I     G SI+V       A
Sbjct: 9   FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              +    LP        ++F   +    +   ++     A+E  + +++Q++ G+++AR
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211
           VHI    D G   +       S +      S        I+  +  +  ++D  +++V+ 
Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241
                L+     +     +     +     
Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211


>gi|218988933|gb|ACL13596.1| lipoprotein PrgK [Salmonella enterica subsp. salamae serovar Sofia]
          Length = 252

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 12/210 (5%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93
                 +      +L   L+    N +   L   NI+  +I     G SI+V       A
Sbjct: 9   FLLVVTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              +    LP        ++F   +    +   ++     A+E  + +++Q++ G+++AR
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLD 211
           VHI    D G   +       S +      S        I+  +  +  ++D  +++V+ 
Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV- 186

Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEI 241
                L+     +     +     +     
Sbjct: 187 -----LSERSDAQLQAPGTPVKRNSFATSW 211


>gi|85060054|ref|YP_455756.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|84780574|dbj|BAE75351.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 253

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 67/183 (36%), Gaps = 6/183 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSM 89
           +         +++   + L   L+    N +   L   NI    +D   +G S+++    
Sbjct: 7   LACGAMMIAMLSACKEEPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVD 66

Query: 90  VGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGI 149
           +  A   L    +PS       ++F   +    +   ++     A+E  + +++Q + G+
Sbjct: 67  LPAAVDLLRTYQVPSPPRMEIAQMFPGDS-LVSSPRAEKARLYSAIEQRLEQSLQVLEGV 125

Query: 150 VAARVHIVMP-DMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDV 207
           V ARVH+    D G   +       S ++     S        ++  +  +   +    +
Sbjct: 126 VNARVHVSYDIDAGENGRAPRPVHLSALVSYEPDSDPALLIGDVKRFLKNSFAEVAYEHI 185

Query: 208 TVL 210
           +V+
Sbjct: 186 SVV 188


>gi|301027465|ref|ZP_07190802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 69-1]
 gi|300394973|gb|EFJ78511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 69-1]
          Length = 244

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|261344604|ref|ZP_05972248.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rustigianii DSM 4541]
 gi|282567518|gb|EFB73053.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Providencia rustigianii DSM 4541]
          Length = 249

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 4/168 (2%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRI---SDNGSSISVPSSMVGKARIHLAAQGL 102
                L   L     N +   L E  I+ +    S NG SI V       +   L    L
Sbjct: 19  CDNQLLLSDLSQRQSNEVLAVLQEHGIEAQRKQDSKNGDSIRVSPDDFVISVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMG 162
           PS         F   +    +   +    +  +E  + +++ +I  +V ARVH+  P  G
Sbjct: 79  PSKGPVEIIHAFPGDS-LVASPQAERTRVLSLIEQRLEQSLLTIPHVVNARVHVSYPVAG 137

Query: 163 SFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +      +  +S++  + N         I+  +  +       +V+V+
Sbjct: 138 NGPIKPVQKVSSLVTYSGNEDPKVMMNKIKLFLNNSFAETTYDNVSVV 185


>gi|331664417|ref|ZP_08365323.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli TA143]
 gi|284922795|emb|CBG35883.1| type III secretion system protein [Escherichia coli 042]
 gi|331058348|gb|EGI30329.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli TA143]
          Length = 244

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|62085059|gb|AAX62924.1| putative type III secretion apparatus lipoprotein [Escherichia
           coli]
 gi|323966646|gb|EGB62078.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli M863]
 gi|323978527|gb|EGB73609.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli TW10509]
 gi|327251607|gb|EGE63293.1| hypothetical protein ECSTEC7V_3457 [Escherichia coli STEC_7v]
          Length = 244

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|218706353|ref|YP_002413872.1| putative type III secretion system lipoprotein EprK [Escherichia
           coli UMN026]
 gi|293406346|ref|ZP_06650272.1| lipoprotein prgK [Escherichia coli FVEC1412]
 gi|300898076|ref|ZP_07116444.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 198-1]
 gi|218433450|emb|CAR14352.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli UMN026]
 gi|291426352|gb|EFE99384.1| lipoprotein prgK [Escherichia coli FVEC1412]
 gi|300358214|gb|EFJ74084.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 198-1]
          Length = 244

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|293416099|ref|ZP_06658739.1| type III secretion protein SctJ [Escherichia coli B185]
 gi|291432288|gb|EFF05270.1| type III secretion protein SctJ [Escherichia coli B185]
          Length = 244

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 6/197 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
           G   K       SV+         +     I+  +  +  ++   +++V+ S  + +   
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQ 194

Query: 221 EMERNILGKSLSIVQAI 237
                I     +  +A+
Sbjct: 195 APTNEISEPVFAYDKAM 211


>gi|194350711|gb|ACF53786.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 128

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           R+   G ++ + +  + +A   L A GLP  S  +  E+F K +    T   +    + A
Sbjct: 1   RVEKTGVTLVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYA 59

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRH 193
           L  E+  T+  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR 
Sbjct: 60  LSQEVEATLAQIDGVLVARVHVVLPERIAPGEPVQPASAAVFIKYRAELEPDGMEQRIRR 119

Query: 194 LVAAAVPNL 202
           +VA+++P L
Sbjct: 120 MVASSIPGL 128


>gi|15803380|ref|NP_289413.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 EDL933]
 gi|15832970|ref|NP_311743.1| EprK [Escherichia coli O157:H7 str. Sakai]
 gi|168747678|ref|ZP_02772700.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4113]
 gi|168753782|ref|ZP_02778789.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4401]
 gi|168759972|ref|ZP_02784979.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766837|ref|ZP_02791844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4486]
 gi|168775721|ref|ZP_02800728.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778858|ref|ZP_02803865.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785690|ref|ZP_02810697.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC869]
 gi|168799977|ref|ZP_02824984.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC508]
 gi|195936464|ref|ZP_03081846.1| EprK [Escherichia coli O157:H7 str. EC4024]
 gi|208808993|ref|ZP_03251330.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814265|ref|ZP_03255594.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819767|ref|ZP_03260087.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398387|ref|YP_002272324.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327850|ref|ZP_03443933.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794800|ref|YP_003079637.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. TW14359]
 gi|256024641|ref|ZP_05438506.1| putative lipoprotein of type III secretion apparatus [Escherichia
           sp. 4_1_40B]
 gi|261226159|ref|ZP_05940440.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261256586|ref|ZP_05949119.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. FRIK966]
 gi|300950603|ref|ZP_07164505.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 116-1]
 gi|300958184|ref|ZP_07170338.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 175-1]
 gi|301026133|ref|ZP_07189607.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 196-1]
 gi|301643809|ref|ZP_07243846.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 146-1]
 gi|307139541|ref|ZP_07498897.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli H736]
 gi|331643541|ref|ZP_08344672.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H736]
 gi|12517355|gb|AAG57972.1|AE005514_9 putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. EDL933]
 gi|13363188|dbj|BAB37139.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O157:H7 str. Sakai]
 gi|62085081|gb|AAX62944.1| putative type III secretion apparatus lipoprotein [Escherichia
           coli]
 gi|187768733|gb|EDU32577.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017908|gb|EDU56030.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003460|gb|EDU72446.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358523|gb|EDU76942.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363691|gb|EDU82110.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369428|gb|EDU87844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374196|gb|EDU92612.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC869]
 gi|189377636|gb|EDU96052.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC508]
 gi|208728794|gb|EDZ78395.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735542|gb|EDZ84229.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739890|gb|EDZ87572.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159787|gb|ACI37220.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. EC4115]
 gi|217320217|gb|EEC28642.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594200|gb|ACT73561.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli O157:H7 str. TW14359]
 gi|299879828|gb|EFI88039.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 196-1]
 gi|300315136|gb|EFJ64920.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 175-1]
 gi|300450083|gb|EFK13703.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 116-1]
 gi|301077842|gb|EFK92648.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 146-1]
 gi|320189189|gb|EFW63848.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. EC1212]
 gi|326339070|gb|EGD62885.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli O157:H7 str. 1044]
 gi|326343049|gb|EGD66817.1| type III secretion system BasJ [Escherichia coli O157:H7 str. 1125]
 gi|331037012|gb|EGI09236.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H736]
          Length = 244

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|323935787|gb|EGB32090.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli E1520]
          Length = 244

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|82524583|ref|YP_406178.1| MxiJ [Shigella dysenteriae Sd197]
 gi|81243981|gb|ABB64690.1| MxiJ [Shigella dysenteriae Sd197]
          Length = 241

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 4/163 (2%)

Query: 51  LYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L     N I   L   NI  R  D G    S+ V       A   +    LP+   
Sbjct: 24  LISNLSQRQANEIISVLERHNISARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPER 83

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
               ++F   +    +   ++     A+E  + +++ SI G+++A++H+           
Sbjct: 84  VDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLDDKNISS 142

Query: 168 GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                + + I             I+  +     ++   +++V+
Sbjct: 143 KPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|309703212|emb|CBJ02547.1| type III secretion system protein [Escherichia coli ETEC H10407]
          Length = 244

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   +I+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHHINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|186976174|gb|ACD01056.1| EprK [Escherichia coli O157:H7 str. EC10]
          Length = 244

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G    SI V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|293412203|ref|ZP_06654926.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468974|gb|EFF11465.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 244

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G    SI V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|32307032|gb|AAP79002.1| MxiJ [Shigella flexneri]
          Length = 241

 Score = 88.1 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103
             + L   L     N I   L   NI  R  D G    S+ V       A   +    LP
Sbjct: 20  QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
           +       ++F   +    +   ++     A+E  + +++ SI G+++A++H+       
Sbjct: 80  NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                    + + I             I+  +     ++   +++V+
Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|331654341|ref|ZP_08355341.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli M718]
 gi|331047723|gb|EGI19800.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli M718]
          Length = 244

 Score = 88.1 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 6/197 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN 220
           G   K       SV+         +     I+  +  +  ++   +++V+ S  + +   
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVVLSKRRDIIEQ 194

Query: 221 EMERNILGKSLSIVQAI 237
                I     +  +A+
Sbjct: 195 APTYEISEPVFAYEKAM 211


>gi|312171366|emb|CBX79625.1| Lipoprotein PrgK precursor [Erwinia amylovora ATCC BAA-2158]
          Length = 255

 Score = 88.1 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 6/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
           ++ +      +  + + L   L  S  N +   L + NI    + N   G  I+V  S  
Sbjct: 9   IVILLTAALTSGCNDEKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQSEN 68

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   +    LP S+     E F    S   +   ++   +   E  + ++++ I+ +V
Sbjct: 69  TAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQVV 127

Query: 151 AARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+  P                V+I              I+ L+  ++ ++   +++
Sbjct: 128 NARVHLSYPSFNNDISAKKTVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDVLYENIS 187

Query: 209 VL 210
           V+
Sbjct: 188 VV 189


>gi|292487258|ref|YP_003530130.1| lipoprotein PrgK [Erwinia amylovora CFBP1430]
 gi|292900370|ref|YP_003539739.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200218|emb|CBJ47346.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552677|emb|CBA19722.1| Lipoprotein PrgK precursor [Erwinia amylovora CFBP1430]
          Length = 255

 Score = 87.7 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 68/182 (37%), Gaps = 6/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN---GSSISVPSSMV 90
           ++ +      +  + + L   L  S  N +   L + NI    + N   G  I+V  S  
Sbjct: 9   IVILLTAALTSGCNDEKLLDNLTQSQANHVVAILQQHNISAHKNGNLKAGYVITVGQSEN 68

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   +    LP S+     E F    S   +   ++   +   E  + ++++ I+ +V
Sbjct: 69  TAALSIINQYQLPWSADVQIGEAFPS-GSLVASPNAEQARVLSLQEQRLEQSLRIIAQVV 127

Query: 151 AARVHIVMPD-MGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
            ARVH+  P          +     V+I              I+ L+  ++ ++   +++
Sbjct: 128 NARVHLSYPSFNNDISAKKSVGHVGVLISYKGEIDETMFIPQIKSLIKNSLDDVLYENIS 187

Query: 209 VL 210
           V+
Sbjct: 188 VV 189


>gi|213027569|ref|ZP_03342016.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 204

 Score = 87.3 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 6/179 (3%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93
                 +      +L   L+    N +   L   NI+  +I     G SI+V       A
Sbjct: 9   FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              +    LP        ++F   +    +   ++     A+E  + +++Q++ G+++AR
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127

Query: 154 VHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           VHI    D G   +       S +      S        I+  +  +  ++D  +++V+
Sbjct: 128 VHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 186


>gi|170698158|ref|ZP_02889237.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
 gi|170136923|gb|EDT05172.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia ambifaria IOP40-10]
          Length = 280

 Score = 86.9 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 6/177 (3%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARI 95
               +++ H   L   L  S  N +   L   +I  + S+ G S   + V  +    +  
Sbjct: 12  IVCLLSACHQQALLHGLSESQANEVVALLQAHDITVQKSNQGKSGYMVDVEQTDFPASVD 71

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            L    LPS       + F   +    +   ++   + A+E  + + + ++  +V+ARV 
Sbjct: 72  LLEKYNLPSPPRVEIDQAFPSDS-LVSSPQAEQARLLSAVEQRLEQNLSAMHDVVSARVQ 130

Query: 156 IVMP-DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
           +  P       K       S +I              ++  V  +  ++D  D++V+
Sbjct: 131 VSYPLQQTDLIKSEPHMHVSALITYRGNVDPAMLVSEVKRFVKNSFASIDYDDISVI 187


>gi|74314938|ref|YP_313356.1| MxiJ [Shigella sonnei Ss046]
 gi|2497731|sp|Q55288|MXIJ_SHISO RecName: Full=Lipoprotein mxiJ; Flags: Precursor
 gi|829066|dbj|BAA09148.1| ORF8 [Shigella sonnei]
 gi|73858415|gb|AAZ91121.1| MxiJ [Shigella sonnei Ss046]
 gi|323166429|gb|EFZ52194.1| hypothetical protein SS53G_3273 [Shigella sonnei 53G]
          Length = 241

 Score = 86.9 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103
             + L   L     N I   L   NI  R  D G    S+ V       A   +    LP
Sbjct: 20  QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
           +       ++F   +    +   ++     A+E  + +++ SI G+++A++H+       
Sbjct: 80  NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                    + + I             I+  +     ++   +++V+
Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|293416340|ref|ZP_06658979.1| lipoprotein prgK [Escherichia coli B185]
 gi|291431696|gb|EFF04679.1| lipoprotein prgK [Escherichia coli B185]
          Length = 250

 Score = 86.9 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 71/182 (39%), Gaps = 6/182 (3%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90
           + F+     ++     NL  +L+    N +   L + NI     DNG    S++V     
Sbjct: 6   LFFLLVLTCLSGCKEKNLLQELDQYQANEVISLLQQHNIRADKIDNGKKGFSVTVAEPDF 65

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   +    LP        ++F    +   +   ++     A+E  + +++Q++ GI+
Sbjct: 66  TAAVYWVKVYELPPRPRVEIAQMFPAD-ALVSSPRAEKARLYSAIEQRLEQSLQTLPGII 124

Query: 151 AARVHIVMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVT 208
           +ARVHI    D G   +       S +      +        I+  +  +  N++  +++
Sbjct: 125 SARVHISYDIDAGESGRPSVPVHLSALAVYERGTPLGLQISDIKRFLKNSFANVEYDNIS 184

Query: 209 VL 210
           V+
Sbjct: 185 VV 186


>gi|13449086|ref|NP_085302.1| Type III secretion protein [Shigella flexneri 5a]
 gi|31983564|ref|NP_858272.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri 2a str. 301]
 gi|547955|sp|Q06081|MXIJ_SHIFL RecName: Full=Lipoprotein mxiJ; Flags: Precursor
 gi|13310634|gb|AAK18458.1|AF348706_147 Type III secretion protein [Shigella flexneri 5a]
 gi|152767|gb|AAA26532.1| lipoprotein [Shigella flexneri]
 gi|12329083|emb|CAC05814.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri]
 gi|18462556|gb|AAL72328.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri 2a str. 301]
 gi|281603894|gb|ADA76877.1| MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery
           [Shigella flexneri 2002017]
 gi|333011811|gb|EGK31212.1| hypothetical protein SFK227_5445 [Shigella flexneri K-227]
 gi|333011866|gb|EGK31259.1| hypothetical protein SFK227_5394 [Shigella flexneri K-227]
 gi|333020368|gb|EGK39632.1| hypothetical protein SFK304_1151 [Shigella flexneri K-304]
          Length = 241

 Score = 86.9 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103
             + L   L     N I   L   NI  R  D G    S+ V       A   +    LP
Sbjct: 20  QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
           +       ++F   +    +   ++     A+E  + +++ SI G+++A++H+       
Sbjct: 80  NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                    + + I             I+  +     ++   +++V+
Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|187734478|ref|YP_001883201.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella boydii CDC 3083-94]
 gi|194435204|ref|ZP_03067432.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella dysenteriae 1012]
 gi|187426974|gb|ACD06249.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella boydii CDC 3083-94]
 gi|194416548|gb|EDX32689.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Shigella dysenteriae 1012]
          Length = 241

 Score = 86.9 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 4/167 (2%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLP 103
             + L   L     N I   L   NI  R  D G    S+ V       A   +    LP
Sbjct: 20  QREELISNLSQRQANEIISVLERHNITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
           +       ++F   +    +   ++     A+E  + +++ SI G+++A++H+       
Sbjct: 80  NPERVDISQMFPTDS-LVSSPRAEKARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEK 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
                    + + I             I+  +     ++   +++V+
Sbjct: 139 NISSKPMHISVIAIYDSPKESELLVSNIKRFLKNTFSDVKYENISVI 185


>gi|284007659|emb|CBA73356.1| type III secretion system lipoprotein YscJ,HrcJ,EscJ,PscJ
           [Arsenophonus nasoniae]
          Length = 237

 Score = 86.9 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSS 105
           + L   L ++  N +   L + +I    S  G     I+V    +  A   L    LPS 
Sbjct: 20  EALLNSLTITQANEVLAVLQKHHITVSKSAQGKGLYKINVAKEDLPAAVQLLQEYQLPSP 79

Query: 106 SSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR 165
                 +LF    +   +  +++   +  +E  + +++ ++  I  ARVH+  P   + R
Sbjct: 80  ERLEISQLFPAD-ALVNSPQIEKARLISGIEQRLEQSLMALDKIADARVHLSYPIAANNR 138

Query: 166 KIGARPTASVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTV 209
                  + ++            +  I+  +  A+  L+   +TV
Sbjct: 139 SQAPMKASVIVFYHDENQDIDELKLGIKAFIKNAISELEPQYITV 183


>gi|293449177|ref|ZP_06663598.1| type III secretion protein SctJ [Escherichia coli B088]
 gi|291322267|gb|EFE61696.1| type III secretion protein SctJ [Escherichia coli B088]
          Length = 244

 Score = 86.9 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GI+++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLTVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184


>gi|257484919|ref|ZP_05638960.1| flagellar MS-ring protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 145

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 15/160 (9%)

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A G ++ RGD++++ ++ F   +                         +   VG + +  
Sbjct: 1   AVGFDASRGDSVSVINVPFSSERAEVLPEASFYSQPWFWD-------IVKQAVGVIFILI 53

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
           L    LR +       K +                  G + ND ++L      +      
Sbjct: 54  LVFGVLRPVLTNITTGKSKELAGFGGDAELGGMGGLDGELSNDRVSLGGPQSILLPSP-- 111

Query: 515 LQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                 +         +  ++  +  R A+++++W  ++ 
Sbjct: 112 ------TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 145


>gi|300936210|ref|ZP_07151146.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 21-1]
 gi|300458667|gb|EFK22160.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 21-1]
          Length = 244

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G    SI V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKIGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A++  + ++++ + GIV++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIKQRLEQSLKIMDGIVSSRVHVSYDVDT 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENISVV 184


>gi|323226606|gb|EGA10809.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
          Length = 134

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L   G P     +  ++F       ++   ++       E  I   +  + G++
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLKEQRIEGMLSQMEGVI 123

Query: 151 AARVHIVMP 159
            A+V I +P
Sbjct: 124 NAKVTIALP 132


>gi|220915860|ref|YP_002491164.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953714|gb|ACL64098.1| secretory protein YscJ/FliF family protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 239

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 10/171 (5%)

Query: 49  DNLYVKLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLP 103
           + L   L+    N + VAL E  I    +       G  + V ++   +AR  LA + LP
Sbjct: 20  EALLHGLDEPQANDVLVALDEGGIAAEKAREDGADAGWEVRVAAADAVRARRVLAERDLP 79

Query: 104 SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS 163
                +G++      S   T+  +    + AL GE+AR+I++I G+V ARVH+ +P    
Sbjct: 80  RQ-RPAGFDAVLAKGSMVPTATEEHALYLHALSGELARSIEAIDGVVGARVHLGLPQADP 138

Query: 164 FRKIGARPTASVMIRAINPSVYKSA----EAIRHLVAAAVPNLDMGDVTVL 210
           FR        + ++     +   +       +R LVA A   LD   V+V+
Sbjct: 139 FRPGERPAPRAAVLVRCRAAACAAVRALEPGLRALVAGAADGLDAAAVSVV 189


>gi|323173915|gb|EFZ59544.1| hypothetical protein ECLT68_2234 [Escherichia coli LT-68]
          Length = 244

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GI+++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   ++ V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSFASVQYENIYVV 184


>gi|238759401|ref|ZP_04620566.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae
           ATCC 35236]
 gi|238702428|gb|EEP94980.1| Type III secretion system apparatus lipoprotein [Yersinia aldovae
           ATCC 35236]
          Length = 247

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG---SSISVPSSMVGKARIHLAAQ 100
           +      L  +L     N +   L E  ++    +NG   +SI V  S    A   L   
Sbjct: 17  SGCDNQVLLTELSQRQSNEVLAVLQENGVEGTRRENGKLGNSIKVARSDFVTAVDLLRLY 76

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
            LPS  S    + F   +    +   +    +  +E  + +++ +I G+V ARVH+  P 
Sbjct: 77  NLPSKESVEIIQAFPGDS-LVASPQAERSRLLSLIEQRLEQSLLTIPGVVNARVHVSYP- 134

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
           +    ++      S ++        K   + I+  +  +       +V+V+
Sbjct: 135 LSGNNRVKQPQQVSSLVTYAGNEDPKLMMSKIKLFLTNSFAEASFDNVSVV 185


>gi|45504782|gb|AAS66872.1| PrgK [Sodalis glossinidius]
          Length = 242

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 6/177 (3%)

Query: 39  ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARI 95
               +++   + L   L+    N +   L   NI    +D   +G S+++    +  A  
Sbjct: 2   MIAMLSACKEEPLLKGLDQVQANEVITTLQRNNIAAEKADHGKSGYSVAINKVDLPAAVD 61

Query: 96  HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVH 155
            L    +PS       ++F   +    +   ++     A+E  + +++Q + G+V ARVH
Sbjct: 62  LLRTYQVPSPPRMEIAQMFPGDS-LVSSPRAEKARLYSAIEQRLEQSLQVLEGVVNARVH 120

Query: 156 IVMP-DMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVL 210
           +    D G   +       S ++     S        ++  +  +   +    ++V+
Sbjct: 121 VSYDIDAGENGRAPRPVHLSALVSYEPDSDPALLIGDVKRFLKNSFAEVAYEHISVV 177


>gi|157157566|ref|YP_001464192.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           E24377A]
 gi|191166008|ref|ZP_03027844.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           B7A]
 gi|209920309|ref|YP_002294393.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli SE11]
 gi|218555405|ref|YP_002388318.1| putative Type III secretion system lipoprotein EprK [Escherichia
           coli IAI1]
 gi|218696453|ref|YP_002404120.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli 55989]
 gi|256019349|ref|ZP_05433214.1| Putative Type III secretion system lipoprotein EprK [Shigella sp.
           D9]
 gi|260856970|ref|YP_003230861.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O26:H11 str. 11368]
 gi|260869536|ref|YP_003235938.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O111:H- str. 11128]
 gi|300815719|ref|ZP_07095943.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 107-1]
 gi|300820651|ref|ZP_07100802.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 119-7]
 gi|300906610|ref|ZP_07124301.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 84-1]
 gi|301302998|ref|ZP_07209125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 124-1]
 gi|309793911|ref|ZP_07688336.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 145-7]
 gi|331678837|ref|ZP_08379511.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H591]
 gi|332280462|ref|ZP_08392875.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9]
 gi|71388150|gb|AAZ31284.1| EprK [Escherichia coli]
 gi|157079596|gb|ABV19304.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           E24377A]
 gi|190903956|gb|EDV63669.1| type III secretion apparatus lipoprotein EprK [Escherichia coli
           B7A]
 gi|209913568|dbj|BAG78642.1| putative lipoprotein of type III secretion apparatus [Escherichia
           coli SE11]
 gi|218353185|emb|CAU99067.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli 55989]
 gi|218362173|emb|CAQ99786.1| Putative Type III secretion system lipoprotein EprK [Escherichia
           coli IAI1]
 gi|257755619|dbj|BAI27121.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O26:H11 str. 11368]
 gi|257765892|dbj|BAI37387.1| type III secretion system lipoprotein precursor EprK [Escherichia
           coli O111:H- str. 11128]
 gi|300401649|gb|EFJ85187.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 84-1]
 gi|300526915|gb|EFK47984.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 119-7]
 gi|300531648|gb|EFK52710.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 107-1]
 gi|300841662|gb|EFK69422.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 124-1]
 gi|308122318|gb|EFO59580.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 145-7]
 gi|315256723|gb|EFU36691.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 85-1]
 gi|320202498|gb|EFW77068.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli EC4100B]
 gi|323154782|gb|EFZ40979.1| hypothetical protein ECEPECA14_3340 [Escherichia coli EPECa14]
 gi|323180296|gb|EFZ65848.1| hypothetical protein ECOK1180_0977 [Escherichia coli 1180]
 gi|323183404|gb|EFZ68801.1| hypothetical protein ECOK1357_3182 [Escherichia coli 1357]
 gi|324021198|gb|EGB90417.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli MS 117-3]
 gi|324119892|gb|EGC13771.1| YscJ/HrcJ family protein type III secretion lipoprotein
           [Escherichia coli E1167]
 gi|331073667|gb|EGI44988.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Escherichia coli H591]
 gi|332102814|gb|EGJ06160.1| type III secretion apparatus lipoprotein EprK [Shigella sp. D9]
          Length = 244

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIFVEPTDFASAVDWLKIYNL 75

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           P    +         ++   +   ++     A+E  + ++++ + GI+++RVH+    D 
Sbjct: 76  P-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHVSYDVDN 134

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 135 GDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 184


>gi|330953274|gb|EGH53534.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 130

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 30  LVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGS-SISVP 86
           ++ +++  A    + +    +LY  L   + N +   L    I    ++ DNG   + V 
Sbjct: 7   VLRLLIVAALASLLQACD-IDLYTNLGEREANAMLAVLLRDGIPASRKVQDNGQLKVMVD 65

Query: 87  SSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSI 146
                +A   L   GLP  S ++  E+F K N    +   +    V AL  E++ T+  I
Sbjct: 66  EKRFAEAMAALDDAGLPGQSFSNMGEVF-KGNGLVSSPVQERAQMVYALSEELSHTVSQI 124

Query: 147 SGIVAA 152
            GI++A
Sbjct: 125 DGILSA 130


>gi|226326448|ref|ZP_03801966.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198]
 gi|225205231|gb|EEG87585.1| hypothetical protein PROPEN_00296 [Proteus penneri ATCC 35198]
          Length = 248

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 5/181 (2%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMV 90
           ML       +      +L   L      ++   L +  I    +  G     +SV    V
Sbjct: 1   MLLFCLVSLLTGCKEQSLLTGLNQRQATQVQAVLQKHQITSTQTALGKGLFDVSVKKEDV 60

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIV 150
             A   L    LPS++     ++F    +   +   ++   + A+E  + +++ +I  ++
Sbjct: 61  AVAIQILEQYQLPSNTRVEITQIFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIESVI 119

Query: 151 AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTV 209
            ARVHI  P   S R I     ++++    +    +   E +R  +  +  +++  ++TV
Sbjct: 120 DARVHISYPISPSERIIPPPHASAIIFYEDSVPDAEQLGEDVRAFIHNSFNDMNEDNITV 179

Query: 210 L 210
           L
Sbjct: 180 L 180


>gi|213160801|ref|ZP_03346511.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 233

 Score = 85.4 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 12/196 (6%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 4   LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 63

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRK 166
               ++F   +    +   ++     A+E  + +++Q++ G+++ARVHI    D G   +
Sbjct: 64  VEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGR 122

Query: 167 IGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
                  S +      S        I+  +  +  ++D  +++V+      L+     + 
Sbjct: 123 PPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV------LSERSDAQL 176

Query: 226 ILGKSLSIVQAIQHEI 241
               +     +     
Sbjct: 177 QAPGTPVKRNSFATSW 192


>gi|323211177|gb|EFZ96024.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
          Length = 230

 Score = 85.0 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRA 134
           +  ++G ++ V  S    A   L   G P     +  ++F       ++   ++      
Sbjct: 30  KQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFL 88

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRH 193
            E  I   +  + G++ A+V I +P         +  + +V I+       ++    I+ 
Sbjct: 89  KEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKD 147

Query: 194 LVAAAVPNLDMGDVTVL 210
           L+  ++P L    +++L
Sbjct: 148 LIEMSIPGLQYSKISIL 164


>gi|310823558|ref|YP_003955916.1| type III secretion lipoprotein, yscj/flif family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396630|gb|ADO74089.1| Type III secretion lipoprotein, YscJ/FliF family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 267

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 9/165 (5%)

Query: 54  KLEVSDVNRISVALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGLPSSSSN 108
            L+    N +   L E  ++ R           SI V  +    A   LA  GLP   + 
Sbjct: 27  GLDERQANELQTVLLERGLEARKVPEAGKKPSWSIEVDEAQASAAVRILAELGLPRPVAE 86

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIG 168
           +G ++F    +   T   +++ R R LE  I +T+Q + G++ ARVH+++P         
Sbjct: 87  TGCDVF-GGGALLRTPIEEQLCRTRVLERGIEKTLQGMEGVLVARVHLMVPPPARPGHAP 145

Query: 169 ARPTASVMIRA---INPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
           +   AS ++R        + +S + ++ L+A  V  L    V++L
Sbjct: 146 SAAKASALLRTASGQADRLRQSQDRLQALIAGGVEGLSPEAVSLL 190


>gi|213613043|ref|ZP_03370869.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 161

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 19/177 (10%)

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +I  +   A G + +RGDT+ + +  F                         
Sbjct: 4   PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQ 59

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           ++ A  +L+  ++   L   A+         +      ++ +                + 
Sbjct: 60  LLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------QETEE 107

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 108 AVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 161


>gi|213855154|ref|ZP_03383394.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 160

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 55/177 (31%), Gaps = 19/177 (10%)

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +I  +   A G + +RGDT+ + +  F                         
Sbjct: 3   PLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQ 58

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           ++ A  +L+  ++   L   A+         +      ++ +                + 
Sbjct: 59  LLAAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------QETEE 106

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
                 ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 107 AVEVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 160


>gi|167566213|ref|ZP_02359129.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia oklahomensis EO147]
 gi|167573323|ref|ZP_02366197.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia oklahomensis C6786]
          Length = 298

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   N+  R  D    G ++SV       A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHNLAVRKEDLGKTGYAVSVEQVDFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV I  P   
Sbjct: 79  PSQARVQIGQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQISYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNQDILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|108759060|ref|YP_630659.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Myxococcus xanthus DK 1622]
 gi|108462940|gb|ABF88125.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Myxococcus xanthus DK 1622]
          Length = 272

 Score = 83.8 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 15/210 (7%)

Query: 55  LEVSDVNRISVALSEANIDFRISDNGS------SISVPSSMVGKARIHLAAQGLPSSSSN 108
           L  +D N I V LS+  I+ +             I+VP +   +A   L    LP     
Sbjct: 29  LSEADANEIYVLLSKNGINAKKEKEEGGNEVRFMITVPKADAAQAAELLKLNSLPRP-VE 87

Query: 109 SGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF--RK 166
            G   F K  S   T+  +    ++A+ GE++  +  I G++ AR  +++P+       +
Sbjct: 88  KGLAHFAK-GSMVPTATEERAMLLKAMGGEVSNALNQIDGVLEARAIVMIPENNDLTQPE 146

Query: 167 IGARPTASVMIRAINPS---VYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME 223
               P+ASV I+               ++   A AVP L    VTVL    + L  +   
Sbjct: 147 NKPMPSASVFIKYRPGEGGKPPIDTAVVQQFAATAVPELKASAVTVL--MTQALPPSAET 204

Query: 224 RNILGKSLSIVQAIQHEIEMNINKALAAFL 253
                    +   +            A   
Sbjct: 205 DAESRLQDVLGLRMTAASASQFKVMFAGAF 234


>gi|194350713|gb|ACF53787.1| HrcJ [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 120

 Score = 83.8 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           + + +  + +A   L A GLP  S  +  E+F K +    T   +    + AL  E+  T
Sbjct: 1   LVIDAKNMERAVNILNAAGLPKQSRTNLGEVFQK-SGVISTPLEERARYIYALSQEVEAT 59

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEA-IRHLVAAAVPN 201
           +  I G++ ARVH+V+P+  +  +     +A+V I+          E  IR +VA+++P 
Sbjct: 60  LAQIDGVLVARVHVVLPERIAPGEPVHPASAAVFIKYRAELEPDGMEQRIRRMVASSIPG 119

Query: 202 L 202
           L
Sbjct: 120 L 120


>gi|326634131|pdb|2Y9J|Y Chain Y, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634132|pdb|2Y9J|Z Chain Z, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634133|pdb|2Y9J|AA Chain a, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634134|pdb|2Y9J|BB Chain b, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634135|pdb|2Y9J|CC Chain c, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634136|pdb|2Y9J|DD Chain d, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634137|pdb|2Y9J|EE Chain e, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634138|pdb|2Y9J|FF Chain f, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634139|pdb|2Y9J|GG Chain g, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634140|pdb|2Y9J|HH Chain h, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634141|pdb|2Y9J|II Chain i, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634142|pdb|2Y9J|JJ Chain j, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634143|pdb|2Y9J|KK Chain k, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634144|pdb|2Y9J|LL Chain l, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634145|pdb|2Y9J|MM Chain m, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634146|pdb|2Y9J|NN Chain n, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634147|pdb|2Y9J|OO Chain o, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634148|pdb|2Y9J|PP Chain p, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634149|pdb|2Y9J|QQ Chain q, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634150|pdb|2Y9J|RR Chain r, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634151|pdb|2Y9J|SS Chain s, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634152|pdb|2Y9J|TT Chain t, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634153|pdb|2Y9J|UU Chain u, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
 gi|326634154|pdb|2Y9J|VV Chain v, Three-Dimensional Model Of Salmonella's Needle Complex At
           Subnanometer Resolution
          Length = 170

 Score = 83.4 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 6/165 (3%)

Query: 51  LYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSS 107
           L   L+    N +   L   NI+  +I     G SI+V       A   +    LP    
Sbjct: 3   LLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPR 62

Query: 108 NSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRK 166
               ++F   +    +   ++     A+E  + +++Q++ G+++ARVHI    D G   +
Sbjct: 63  VEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGR 121

Query: 167 IGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
                  S +      S        I+  +  +  ++D  +++V+
Sbjct: 122 PPKPVHLSALAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 166


>gi|330940717|gb|EGH43725.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 104

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
            F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  +I   L+
Sbjct: 25  SFLENLSEMTMLRQIGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMDTLT 84

Query: 69  EANIDFRISDNGSSISVPSS 88
            ANI++ +  N  ++ V S 
Sbjct: 85  AANINYTVEPNSGALLVKSD 104


>gi|213028051|ref|ZP_03342498.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 156

 Score = 81.9 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 19/175 (10%)

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
               + +I  +   A G + +RGDT+ + +  F                         ++
Sbjct: 1   TADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELP----FWQQQSFIDQLL 56

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
            A  +L+  ++   L   A+         +      ++ +                +   
Sbjct: 57  AAGRWLLVLVVAWILWRKAVHPQLTRRVEEAKAAQEQAQVR------------QETEEAV 104

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
               ++D     R    R+ + V  Q   R+  M + +    A ++R+W  ++ E
Sbjct: 105 EVRLSKDEQLQQRRANQRLGAEVMSQ---RIREMSDNDPRVVALVIRQWMSNDHE 156


>gi|167577420|ref|ZP_02370294.1| type III secretion system BasJ [Burkholderia thailandensis TXDOH]
          Length = 234

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|289803181|ref|ZP_06533810.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 210

 Score = 81.5 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 3/136 (2%)

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
             ++G ++ V  S    A   L   G P     +  ++F       ++   ++       
Sbjct: 11  KEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLK 69

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHL 194
           E  I   +  + G++ A+V I +P         +  + +V I+       ++    I+ L
Sbjct: 70  EQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDL 128

Query: 195 VAAAVPNLDMGDVTVL 210
           +  ++P L    +++L
Sbjct: 129 IEMSIPGLQYSKISIL 144


>gi|217425204|ref|ZP_03456699.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
 gi|217391809|gb|EEC31836.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 576]
          Length = 315

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|76819532|ref|YP_335750.1| Type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|254264263|ref|ZP_04955128.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
 gi|76584005|gb|ABA53479.1| Type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|254215265|gb|EET04650.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1710a]
          Length = 315

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|53716312|ref|YP_106138.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344]
 gi|124381716|ref|YP_001025850.1| type III secretion system BasJ [Burkholderia mallei NCTC 10229]
 gi|126447771|ref|YP_001077934.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247]
 gi|52422282|gb|AAU45852.1| type III secretion system BasJ [Burkholderia mallei ATCC 23344]
 gi|126240625|gb|ABO03737.1| type III secretion system BasJ [Burkholderia mallei NCTC 10247]
 gi|261826463|gb|ABN00251.2| type III secretion system BasJ [Burkholderia mallei NCTC 10229]
          Length = 316

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|83716456|ref|YP_439020.1| type III secretion system BasJ [Burkholderia thailandensis E264]
 gi|257142128|ref|ZP_05590390.1| type III secretion system BasJ [Burkholderia thailandensis E264]
 gi|83650281|gb|ABC34345.1| type III secretion system BasJ [Burkholderia thailandensis E264]
          Length = 315

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|134281957|ref|ZP_01768663.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
 gi|134246486|gb|EBA46574.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 305]
          Length = 316

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167615572|ref|ZP_02384207.1| type III secretion system BasJ [Burkholderia thailandensis Bt4]
          Length = 235

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|53722571|ref|YP_111556.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|126456880|ref|YP_001076127.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 1106a]
 gi|254186868|ref|ZP_04893384.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193641|ref|ZP_04900073.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
 gi|254301444|ref|ZP_04968888.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|52212985|emb|CAH39023.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|126230648|gb|ABN94061.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 1106a]
 gi|157810759|gb|EDO87929.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 406e]
 gi|157934552|gb|EDO90222.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650392|gb|EDS83085.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei S13]
          Length = 315

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|226196079|ref|ZP_03791665.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225931972|gb|EEH27973.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 315

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|126442499|ref|YP_001063176.1| YscJ/HrcJ family type III secretion apparatus lipoprotein
           [Burkholderia pseudomallei 668]
 gi|126221990|gb|ABN85495.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei 668]
          Length = 315

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|313634363|gb|EFS00960.1| flagellar M-ring protein FliF [Listeria seeligeri FSL N1-067]
 gi|313639038|gb|EFS04028.1| flagellar M-ring protein FliF [Listeria seeligeri FSL S4-171]
          Length = 160

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNR 62
           + ++   +    +  +       ++ +   ++      ++N+P  +  LY  L  +   +
Sbjct: 1   MAKIKTMYSKLKNWHK------GAIFVGLFVVVTVFLLYLNTPKTEITLYKNLSETSQQQ 54

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L++  +D+ +  +G+ I V   +    R   A  G+P +    G ++    +S G 
Sbjct: 55  VTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADLGIPYTG-QDGNDILLN-SSLGA 111

Query: 123 TS----FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           +       +++     LE EI ++  +   + +A V + +P+  S  + 
Sbjct: 112 SEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEE 158


>gi|167923356|ref|ZP_02510447.1| type III secretion system BasJ [Burkholderia pseudomallei BCC215]
          Length = 238

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167908415|ref|ZP_02495620.1| type III secretion system BasJ [Burkholderia pseudomallei NCTC
           13177]
          Length = 233

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167820398|ref|ZP_02452078.1| type III secretion system BasJ [Burkholderia pseudomallei 91]
          Length = 226

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167743223|ref|ZP_02415997.1| type III secretion system BasJ [Burkholderia pseudomallei 14]
          Length = 225

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|237507749|ref|ZP_04520464.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|234999954|gb|EEP49378.1| type III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 315

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|67639417|ref|ZP_00438277.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia mallei GB8 horse 4]
 gi|238519955|gb|EEP83420.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia mallei GB8 horse 4]
          Length = 264

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167850225|ref|ZP_02475733.1| type III secretion system BasJ [Burkholderia pseudomallei B7210]
          Length = 233

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167898828|ref|ZP_02486229.1| type III secretion system BasJ [Burkholderia pseudomallei 7894]
          Length = 232

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167828770|ref|ZP_02460241.1| type III secretion system BasJ [Burkholderia pseudomallei 9]
          Length = 230

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|213426025|ref|ZP_03358775.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 205

 Score = 80.0 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 3/136 (2%)

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
             ++G ++ V  S    A   L   G P     +  ++F       ++   ++       
Sbjct: 6   KEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQKINFLK 64

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAE-AIRHL 194
           E  I   +  + G++ A+V I +P         +  + +V I+       ++    I+ L
Sbjct: 65  EQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSVAVFIKYSPQVNMEAFRVKIKDL 123

Query: 195 VAAAVPNLDMGDVTVL 210
           +  ++P L    +++L
Sbjct: 124 IEMSIPGLQYSKISIL 139


>gi|291562020|emb|CBL40835.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [butyrate-producing bacterium SS3/4]
          Length = 110

 Score = 80.0 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
             L + ++      +  I ++A+  ++     +          Y  L+  +   D   + 
Sbjct: 6   QNLKEAWQKMPGKTKKMIAVIAAGTIILAAAGLLVLNIGTKKGYSTLFTGMSSDDAQAVV 65

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105
             L +  +D+R +D   S+ V S  V K R  L ++G P  
Sbjct: 66  SLLQDEGVDYRYNDKNGSVQVMSDTVDKTRAELLSKGYPKK 106


>gi|227357604|ref|ZP_03841957.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
 gi|227162314|gb|EEI47318.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
          Length = 250

 Score = 80.0 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 5/171 (2%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQ 100
           N     +L   L       I   L +  I    +  G     ISV    +G A   L   
Sbjct: 19  NGCKDQSLLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEY 78

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
            LP+ S     +LF    +   +   ++   + A+E  + +++ +I  ++ ARVH+  P 
Sbjct: 79  QLPTISRIEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPL 137

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
             + R       ++++             + +R  +  A  ++D  ++TVL
Sbjct: 138 SSNDRITPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188


>gi|167724247|ref|ZP_02407483.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Burkholderia pseudomallei DM98]
 gi|167915509|ref|ZP_02502600.1| type III secretion system BasJ [Burkholderia pseudomallei 112]
          Length = 222

 Score = 80.0 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F   +    +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPADS-LVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|167840188|ref|ZP_02466872.1| type III secretion system BasJ [Burkholderia thailandensis MSMB43]
          Length = 216

 Score = 80.0 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 6/170 (3%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISD---NGSSISVPSSMVGKARIHLAAQGL 102
            +   L   L     N +   L   ++  R  D    G ++SV  +    A   L    L
Sbjct: 19  CNQQELLKNLTEQQANDVVAVLQAHDLAVRKEDLGKTGYAVSVEQADFPTAVDLLRQYNL 78

Query: 103 PSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DM 161
           PS +     + F    +   +   ++   + A+E  + + + ++  +V+ARV +  P   
Sbjct: 79  PSQARVQIAQAFPAD-ALVASPQAEQARLLSAVEQRLEQNLAALQNVVSARVQVSYPLKP 137

Query: 162 GSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               K  AR   + ++   N          ++  V  +  N+D  D++V+
Sbjct: 138 SDSGKPDARMHVAALLTYRNDVNADILVSEVKRFVKNSFTNIDYDDISVI 187


>gi|197286530|ref|YP_002152402.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|194684017|emb|CAR45314.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 250

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 5/171 (2%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQ 100
           N     +L   L       I   L +  I    +  G     ISV    +G A   L   
Sbjct: 19  NGCKDQSLLTNLSQRQATEIQAVLQKHQITSTRTALGKGLFEISVKKENIGIAIQILEEY 78

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160
            LP+ S     +LF    +   +   ++   + A+E  + +++ +I  ++ ARVH+  P 
Sbjct: 79  QLPTISRIEITQLFPSD-ALVSSPQAEKARLISAIEQRLEQSLLTIDHLIDARVHVSYPL 137

Query: 161 MGSFRKIGARPTASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
             + R       ++++             + +R  +  A  ++D  ++TVL
Sbjct: 138 SSNDRITPTPHASALVFYEDGMIDSDQLSDDVRAFIHNAFNDMDESNITVL 188


>gi|330899426|gb|EGH30845.1| flagellar MS-ring protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 139

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 49/154 (31%), Gaps = 15/154 (9%)

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
            RGD++++ ++ F   +                  F  ++   V ++  L++ F  L  +
Sbjct: 1   SRGDSVSVINVPFSSERAEVLPEASF----YSQPWFWDIVKQAVGVIFILILVFGVLRPV 56

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
                    K+    G               G + ND ++L      +            
Sbjct: 57  LNNITNGKRKELAGFGG---DAELGGMGGLDGELSNDRVSLGGPQSILLPSP-------- 105

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
           +         +  ++  +  R A+++++W  ++ 
Sbjct: 106 TEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 139


>gi|315301965|ref|ZP_07872961.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
 gi|313629672|gb|EFR97809.1| flagellar M-ring protein FliF [Listeria ivanovii FSL F6-596]
          Length = 159

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 69/169 (40%), Gaps = 16/169 (9%)

Query: 4   LDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYD-NLYVKLEVSDVNR 62
           + ++   +    +  +       ++ +   ++      ++N P  +  LY  L  +   +
Sbjct: 1   MAKIKTMYSKLKNWHK------GAIFVGLFVVVTVFLLYLNMPKTEITLYKNLSETSQQQ 54

Query: 63  ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122
           ++  L++  +D+ +  +G+ I V   +    R   A  G+P +    G ++    +S G 
Sbjct: 55  VTDQLAKMGVDYTVDKSGN-ILVDEKVETLVRDKFADLGIPYTG-QDGNDILLN-SSLGA 111

Query: 123 TS----FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKI 167
           +       +++     LE EI ++  +   + +A V + +P+  S  + 
Sbjct: 112 SEEDKKMQEKVGTKVNLEKEIVQSYGT--TVDSASVQLTLPESSSIFEE 158


>gi|34497875|ref|NP_902090.1| cell invasion protein [Chromobacterium violaceum ATCC 12472]
 gi|34103731|gb|AAQ60092.1| cell invasion protein [Chromobacterium violaceum ATCC 12472]
          Length = 242

 Score = 78.4 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 44  NSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQ 100
           +     +L   L+    N +   L   NI+   +D G +   I+V  +    A   L A 
Sbjct: 16  SGCQQKDLLKGLDQQQANEVIAVLQRHNIEADKADRGKAGFSIAVAPADFAAAVDWLRAY 75

Query: 101 GLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP- 159
            LPS       ++F   +    +   ++     A+E  + +++Q++ GI++ARVH+    
Sbjct: 76  DLPSRPRMEVAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMDGILSARVHVSYDL 134

Query: 160 DMGSFRKIGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVTVL 210
           D G   +       S +          +    I+  +  +   +D  +++V+
Sbjct: 135 DSGEAGRASQPMHISALAVYDRDVDAAAMINNIKRFLKNSFAEVDYDNISVV 186


>gi|1772456|dbj|BAA14027.1| FliF [Shigella boydii]
          Length = 220

 Score = 76.9 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           ++RLS+AVVVN   L +           +  + +I  +   A G + +RGD++ + +  F
Sbjct: 42  VQRLSVAVVVNYKTLPDGK----PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPF 97

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGE 473
             +                      ++ A  +L+  L+   L   A+R            
Sbjct: 98  NSSDESGGELP----FWQQQAFIDQLLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKA 153

Query: 474 VGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLH 533
           V  ++                  ++      ++D     R    R+ + V  Q   R+  
Sbjct: 154 VQQQAQARE------------EVEDAVEVRLSKDEQLQQRRANQRLGTEVMSQ---RIRE 198

Query: 534 MIEINEERFAKILRKWARSEIE 555
           M + +    A ++R+W  ++ E
Sbjct: 199 MSDNDPRVVALVIRQWINNDHE 220


>gi|157781880|gb|ABV72266.1| FliF [Azospirillum brasilense]
          Length = 77

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 38/77 (49%)

Query: 7  LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
          +    ++  +LG  R+  +  V L+ I  F+     +++P  + LY +L+ ++   I+  
Sbjct: 1  MNNLLQTLRNLGPARLAAIGGVGLLLIGFFVYLMTRLSTPEMELLYAELQPTEAAAIAKK 60

Query: 67 LSEANIDFRISDNGSSI 83
          L EA + F +   G+ I
Sbjct: 61 LEEAKVPFTVDKTGTKI 77


>gi|207111036|ref|ZP_03245198.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 69

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%)

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           +I +P   V + RI LA+QG+P +S   G+E+FD  + FG T F Q I  +RA+EGE++R
Sbjct: 2   TILIPKDKVYEERITLASQGIPKTS-KVGFEIFDTKD-FGATDFDQNIKLIRAIEGELSR 59

Query: 142 TIQSISGI 149
           TI+S++ I
Sbjct: 60  TIESLNPI 67


>gi|12056610|gb|AAG47968.1|AF312695_8 FliF [Pseudomonas fluorescens]
          Length = 97

 Score = 75.3 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%)

Query: 8  LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVAL 67
          L F ++ + +   R + L   +   + +  A   +   P Y  LY  L   D  ++   L
Sbjct: 25 LSFLENLSEMTVLRQVGLLVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDAKQVMDTL 84

Query: 68 SEANIDFRISDNG 80
          + A+I + +  N 
Sbjct: 85 ASADIPYTVEPNS 97


>gi|73532528|dbj|BAE19822.1| flagellar M-ring protein [Edwardsiella tarda]
          Length = 125

 Score = 74.6 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 299 TSQPESAVTVEQNMPHVSDRKVPLP--RSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                         P  S          S     +++E +NYE++     T      +ER
Sbjct: 4   PRSAXGTAGRNTPTPSRSSAISNNGRLTSRNENIRRDETTNYEVDRTIRHTQARAGNIER 63

Query: 357 LSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLEN 416
           LS+AVVVN            +       + +IN +V  A G +  RGDT+++ +  F   
Sbjct: 64  LSVAVVVNYAT----DTNGKEIALSQEKMDQINNLVREAMGFSQSRGDTLSVVNTPFNSV 119

Query: 417 QL 418
           + 
Sbjct: 120 ED 121


>gi|289809530|ref|ZP_06540159.1| pathogenicity 1 island effector protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 176

 Score = 74.6 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 60  VNRISVALSEANIDF-RISDN--GSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDK 116
            N +   L   NI+  +I     G SI+V       A   +    LP        ++F  
Sbjct: 1   ANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPA 60

Query: 117 VNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGARPTASV 175
            +    +   ++     A+E  + +++Q++ G+++ARVHI    D G   +       S 
Sbjct: 61  DS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSA 119

Query: 176 MIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
           +      S        I+  +  +  ++D  +++V+
Sbjct: 120 LAVYERGSPLAHQISDIKRFLKNSFADVDYDNISVV 155


>gi|213618539|ref|ZP_03372365.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 146

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 4/138 (2%)

Query: 37  MAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDN--GSSISVPSSMVGKA 93
                 +      +L   L+    N +   L   NI+  +I     G SI+V       A
Sbjct: 9   FLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAA 68

Query: 94  RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAAR 153
              +    LP        ++F   +    +   ++     A+E  + +++Q++ G+++AR
Sbjct: 69  VYWIKTYQLPPRPRVEIAQMFPADS-LVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSAR 127

Query: 154 VHIVMPDMGSFRKIGARP 171
           VHI             +P
Sbjct: 128 VHISYDIDAGENGRPPKP 145


>gi|124382226|ref|YP_001025747.1| type III secretion inner membrane protein SctJ [Burkholderia mallei
           NCTC 10229]
          Length = 174

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 122 LTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN 181
            T   + +  +  +  E++ T+  I G+V ARVHIV+P+     ++    +ASV I+   
Sbjct: 2   STPTEERVRFIYGVSQELSDTLSKIDGVVVARVHIVLPNNDPLAQVAKPSSASVFIKYRP 61

Query: 182 PSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            +   +    I++LV  +V  L   +V+V 
Sbjct: 62  NANLATLTPQIKNLVVHSVEGLTYDEVSVT 91


>gi|323189407|gb|EFZ74688.1| hypothetical protein ECRN5871_2295 [Escherichia coli RN587/1]
          Length = 134

 Score = 70.7 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 82  SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIAR 141
           ++SV      +A   L   G P     +  E+    +    +   +        E +I R
Sbjct: 2   TLSVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINYLKEQDIER 60

Query: 142 TIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY-KSAEAIRHLVAAAVP 200
            +  I G++   V + + +           +A+V++ +        S   I++LV  +V 
Sbjct: 61  LLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNLAPSVIQIKNLVKNSVD 115

Query: 201 NLDMGDVTVL 210
            L + +++V+
Sbjct: 116 ALKLENISVV 125


>gi|255022494|ref|ZP_05294480.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208]
          Length = 160

 Score = 69.6 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 41  FFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQ 100
           +         LY  L  +   +++  L++  +D+ I  +G+ I V   +    R   A  
Sbjct: 27  YMNTPKTEVTLYKNLSETSQQQVTDQLAKMGVDYTIDKSGN-ILVDEKVETLVRDKFADL 85

Query: 101 GLPSSSSNSGYELFDKVNSFGLTS----FMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           G+P +    G ++    +S G +       +++     LE EI ++  +   I +A V +
Sbjct: 86  GIPYTG-QDGNDILLN-SSLGASEEDKKMQEKVGTKVNLEKEIVQSYGT--TIDSASVQL 141

Query: 157 VMPDMGSFRKIGAR 170
            +P+  S  +  ++
Sbjct: 142 TLPESSSIFEEASQ 155


>gi|13161235|gb|AAK13520.1|AF343975_1 FliF [Treponema denticola ATCC 33520]
          Length = 182

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/189 (11%), Positives = 56/189 (29%), Gaps = 22/189 (11%)

Query: 365 KGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTV 424
           K  +   +     +      + +  KI+  A G ++ R D++++ ++       F     
Sbjct: 16  KYIIKNGVIEREYKPLSAEEIKQAEKIIKDAIGFDASRKDSVSVVNVKVDRTSQFE--LE 73

Query: 425 QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPP 484
              +   L R    +++     +  +L+ F+    + R        + E   +       
Sbjct: 74  DKEYFKALQRQTIFLLSLA--GIALILLFFILYRIISREIERRKRLREEELLRQAQLERE 131

Query: 485 ISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
                                 D      ++   +     ++     ++M   + E  A 
Sbjct: 132 RMLY------------------DQQMADADVSMTVEERRRQELQENAINMAREHPEDVAL 173

Query: 545 ILRKWARSE 553
           ++R W   E
Sbjct: 174 LIRTWLMEE 182


>gi|322650270|gb|EFY46684.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
          Length = 106

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMV 90
           I+      FF+ +    +LY  L   + N++   L + +ID      ++G ++ V  S  
Sbjct: 6   IVFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQF 64

Query: 91  GKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEIT 130
             A   L   G P     +  ++F       ++   ++  
Sbjct: 65  INAVELLRLNGYPHRQFTTADKMFPANQ-LVVSPQEEQQK 103


>gi|294636868|ref|ZP_06715199.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685]
 gi|291089917|gb|EFE22478.1| flagellar M-ring protein [Edwardsiella tarda ATCC 23685]
          Length = 156

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 44/175 (25%), Gaps = 21/175 (12%)

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFAT 438
                 + +IN +V  A G +  RGDT+++ +  F                         
Sbjct: 1   ALSQEKMDQINNLVREAMGFSQNRGDTLSVVNTPFNSVADNGGELP----FWQKQAFIDL 56

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +     +L+  L+   L    ++ +              +            +       
Sbjct: 57  LSTLGRYLLVALVAWLLWRKLVKPMLTKQQQAAALRQQVNTSPISAQPVKQPSNEELQQR 116

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
             L                            R+  M E +    A ++R+W  +E
Sbjct: 117 RKLQQRTTAEAQT-----------------ERVREMAEQDPRVVALVIRQWMSTE 154


>gi|270488959|ref|ZP_06206033.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
 gi|270337463|gb|EFA48240.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Yersinia pestis KIM D27]
          Length = 157

 Score = 64.2 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 8/152 (5%)

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           N    +   ++   V   E ++   +  + G++ A V + MP M    K     TASV I
Sbjct: 7   NQLVTSPTQEQAKMVFLKEQQLENMLSHMDGVIHADVTVAMP-MSVDGKNPLPHTASVFI 65

Query: 178 RAINPSVYKSAEA-IRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQA 236
           +       +S ++ I+ LV  AVP +D   ++V+      +       +           
Sbjct: 66  KYSPEVNLQSYQSQIKGLVRDAVPGIDYAKISVV------MQPANYRFSASEAEQQQGPQ 119

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNM 268
              +  +     +   +GV      V+  +  
Sbjct: 120 TTVQWLLRHVGMVQNMVGVAFISLIVLMFVGW 151


>gi|207110812|ref|ZP_03244974.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 82

 Score = 64.2 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 146 ISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLD 203
           ++ I+ A VHI +P    F      P+ASVM++              I++L+AAAVP L 
Sbjct: 1   LNPILKANVHIAIPKDSVFVAKEVPPSASVMLKLKPDMKLSPTQILGIKNLIAAAVPKLT 60

Query: 204 MGDVTVLDSTGKLLTANE 221
             +V +++  G+ +   +
Sbjct: 61  TENVKIVNENGESIGEGD 78


>gi|320103858|ref|YP_004179449.1| hypothetical protein Isop_2322 [Isosphaera pallida ATCC 43644]
 gi|319751140|gb|ADV62900.1| hypothetical protein Isop_2322 [Isosphaera pallida ATCC 43644]
          Length = 607

 Score = 64.2 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 149/548 (27%), Gaps = 32/548 (5%)

Query: 17  LGRTRILILASVILVPIMLFMAA--RFFVNS---PHYDNLYVK--LEVSDVNRISVALSE 69
           L    +     V+L  + +        +           L+      V++  ++   LS 
Sbjct: 43  LSPFPLPTPIVVVLASLAVLGMVGWVIWTTKESGTPETPLFGGHRFSVAERVQVEALLST 102

Query: 70  ANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEI 129
             I   I  +G  + VP     +A+  L AQ L   S         +  S       +  
Sbjct: 103 KAIPTAIDPDG-VVRVPLKQRLQAQELLQAQKLAPRSLEDTRRRLAQGGSIFELPEDRAR 161

Query: 130 TRVRALEGEIARTIQSISGIVAARVHIVMPD-MGSFRKIGARPTASVMIRAINPS--VYK 186
               A E E    ++   GI++  V   +    G         +  V +           
Sbjct: 162 RLHEAREEEARLLLEECPGILSTYVRFHLERPRGLGSSGSEPVSGFVRVEMEPDLILDPA 221

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
           +A+ I  ++   VP L   ++ +LD+          + +   ++++        +    +
Sbjct: 222 TADTILAILRGLVPGL--RELVLLDARTLARFEWSHDSDAPPQAIAARSDRLKPLPAQAS 279

Query: 247 KALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV 306
            +LA     ++  S   A+   +++                  + +     ++     + 
Sbjct: 280 PSLAQTHSDESQTSLANADTQTNSEVRDLQTRLARRLGWLPHAVVRVEIDPQSVGAPHSP 339

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKG 366
             +  +   +        +L                     +  +     + + V  +  
Sbjct: 340 DGDPKVAPSAASASSPAPTLTLNTPIRLPFANPDEAAGSGHSTASGPRYDVVVVVSPDAK 399

Query: 367 RLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQV 426
                 G   D  +     AE+ +IV+     N R    + I       +   +      
Sbjct: 400 TGGSSPGAPPDARQRLD--AEVRRIVAEEIPDNRRGAVRVEIEPTPSSPSTSSSPPPSSS 457

Query: 427 SFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPIS 486
           S     +   +                           +   +    +   +   P  I+
Sbjct: 458 SSSRSSTVSGSRSP---------------LSPPSNAYPSRASSWLDHLERYAQAWPEAIA 502

Query: 487 SAVTTGLMPNDNIALD--SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK 544
           +A+         I       ++   +   +  +   S        R+  ++  + E  A 
Sbjct: 503 AALGLAAAALGLILGWRWGRSRLRGTAGHHPNAPAPSQTELPPWERVRRIVRDHPEVAAG 562

Query: 545 ILRKWARS 552
           +L +W +S
Sbjct: 563 VLSRWLKS 570


>gi|330719506|gb|EGG98119.1| Flagellar M-ring protein FliF [gamma proteobacterium IMCC2047]
          Length = 157

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 59/159 (37%), Gaps = 2/159 (1%)

Query: 396 TGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL 455
            G +  RGD +T+ +  F+  ++  +  ++V   +     F  ++   +  +  L++ F+
Sbjct: 1   MGFDEARGDIVTVINAPFIPVKVEVAEEIEVPLWEQA--WFMKLVKQGLAALLVLILVFV 58

Query: 456 GLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNL 515
            +  + +    +  ++  +   +  +      A                +      +  +
Sbjct: 59  VIRPIMKSLANNGQQQKALAEATARAQEAAKQAEAMANATPSQAMAMQQSAPGGGAAAMM 118

Query: 516 QSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
                      S   +  +I+ + +R A+++++W +++ 
Sbjct: 119 LPGPGPGAGGMSLSNVQSVIDSDPQRAAQVVKQWVKTDE 157


>gi|238764042|ref|ZP_04624997.1| Type III secretion system apparatus lipoprotein [Yersinia
           kristensenii ATCC 33638]
 gi|238697713|gb|EEP90475.1| Type III secretion system apparatus lipoprotein [Yersinia
           kristensenii ATCC 33638]
          Length = 158

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARP 171
           ELF        +   ++   V   E ++   +  + G++ A V I MP      K     
Sbjct: 3   ELFPSNQ-LVTSPGQEQAKMVYLKEQQLESMLSHMDGVIQADVTIAMPAPT-DGKSSVPH 60

Query: 172 TASVMIRAINPSVYKSA-EAIRHLVAAAVPNLDMGDVTVL 210
            ASV I+        S    I++L+   +P +D   ++V+
Sbjct: 61  AASVFIKYSPEVNLLSYQPQIKNLIHDGIPGIDFSQISVV 100


>gi|167949089|ref|ZP_02536163.1| hypothetical protein Epers_22296 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 86

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 12 KSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS-VALSEA 70
          +        R L +   I   + L +A   +   P Y  L+  L     +R S   L ++
Sbjct: 9  RRLQDNPLLRQLAVMVGIAASVALGVAVVLWSQKPSYSVLFGNLAAERCSRRSHQVLQQS 68

Query: 71 NIDFRISDNGSSI 83
           ID+ +      I
Sbjct: 69 GIDYEVDPASGLI 81


>gi|270488958|ref|ZP_06206032.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270337462|gb|EFA48239.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 92

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 33  IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF--RISDNGSS-ISVPSSM 89
           ++  +     ++    + LY  L   + N++   L    I+   +I  +G   ++V    
Sbjct: 7   MLAIVLMTLSLSGCDME-LYSGLSEGEANQMLALLMLHQINAEKQIEKSGMVGLTVDKRQ 65

Query: 90  VGKARIHLAAQGLPSSSSNSGYELF 114
              A   L   G P     +  ELF
Sbjct: 66  FINAVELLRQNGFPRQRFITVDELF 90


>gi|322632874|gb|EFY29618.1| type III secretion apparatus lipoprotein, YscJ/HrcJ family
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
          Length = 163

 Score = 58.8 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
               N   ++   ++       E  I   +  + G++ A+V I +P         +  + 
Sbjct: 1   MFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSV 59

Query: 174 SVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
           +V I+       ++    I+ L+  ++P L    +++L
Sbjct: 60  AVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 97


>gi|207110042|ref|ZP_03244204.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 19 RTRILILASVILVPIMLFMAARFF------VNSPHYDNLYVKLEVSDVNRISVALSEANI 72
          + + + L +  ++   L +    +           Y  L+  L+ SD   I   L +  I
Sbjct: 10 KKQKIALIAAGVLITALLVFLLLYPFKEKDYAQGGYGVLFEGLDSSDNALILQHLQQNQI 69

Query: 73 DFRIS 77
           +++S
Sbjct: 70 PYKVS 74


>gi|213422413|ref|ZP_03355479.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 163

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
               N   ++   ++       E  I   +  + G++ A+V I +P         +  + 
Sbjct: 1   MFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSV 59

Query: 174 SVMIRAINPSVYKSAE-AIRHLVAAAVPNLDMGDVTVL 210
           +V I+       ++    I+ L+  ++P L    +++L
Sbjct: 60  AVFIKYSPQVNMEAFRVKIKDLIEMSIPGLQYSKISIL 97


>gi|18072081|gb|AAL58462.1|AF456769_1 putative EscJ protein [Escherichia coli]
          Length = 111

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 75  RISDNGS-SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVR 133
            +  +G+ +ISV      +A   L   G P     +  E+    +    +   +      
Sbjct: 2   EMDKSGNVTISVEKEDFVRAITILNNNGFPKKKF-ADIEVIFPPSQLVASPSQENAKINY 60

Query: 134 ALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
             E +I R +  I G++   V + + +           +A+V++ +      
Sbjct: 61  LKEQDIERLLSKIPGVIDCSVSLNVNNN-----ESQPSSAAVLVISSPEVNL 107


>gi|213425005|ref|ZP_03357755.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 129

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 19/147 (12%)

Query: 409 TSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468
            +  F                         ++ A  +L+  ++   L   A+        
Sbjct: 2   VNSPFSAVDNTGGELP----FWQQQSFIDQLLAAGRWLLVLVVAWILWRKAVHPQLTRRV 57

Query: 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSD 528
            +      ++ +                +       ++D     R    R+ + V  Q  
Sbjct: 58  EEAKAAQEQAQVR------------QETEEAVEVRLSKDEQLQQRRANQRLGAEVMSQ-- 103

Query: 529 LRLLHMIEINEERFAKILRKWARSEIE 555
            R+  M + +    A ++R+W  ++ E
Sbjct: 104 -RIREMSDNDPRVVALVIRQWMSNDHE 129


>gi|213861544|ref|ZP_03386014.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 115

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 24/115 (20%)

Query: 266 LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQ---PESAVTVEQNMP--------- 313
           ++   ++  E  Y P+    ++   S+    SE      P        N P         
Sbjct: 1   MDFANKEQTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIA 60

Query: 314 ------------HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLER 356
                         +        +     ++ E SNYE++     T  +   +ER
Sbjct: 61  TPPTNQQNAQNTPQTSTSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIER 115


>gi|153824291|ref|ZP_01976958.1| flagellar M-ring protein [Vibrio cholerae B33]
 gi|126518186|gb|EAZ75411.1| flagellar M-ring protein [Vibrio cholerae B33]
          Length = 131

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 12/142 (8%)

Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAK 470
           M F E ++     V +      +       +ALV ++       L   A+++L N     
Sbjct: 1   MPFAEPEMEQIVDVPIWEHPNFNDWVRWFASALVIIIVI---LVLVRPAMKKLINPAADN 57

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             ++ G   +           G   +     +  +              N +  +     
Sbjct: 58  DDQMYGPDGMPIGADGETSLIGSDIDGGELFEFGSGIDLP---------NLHKDEDVLKA 108

Query: 531 LLHMIEINEERFAKILRKWARS 552
           +  ++    E  A++++ W ++
Sbjct: 109 VRALVANEPELAAQVVKNWMQN 130


>gi|14422425|dbj|BAB60832.1| eprK [Escherichia coli]
          Length = 178

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L    LP    +         ++   +   ++     A+E  + ++++ + GI+++RVH+
Sbjct: 4   LKIYNLP-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHV 62

Query: 157 VMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               D G   K       SV+         +     I+  +  +  ++   +++V+
Sbjct: 63  SYDVDNGDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNSSASVQYENISVV 118


>gi|323159999|gb|EFZ45963.1| lipoprotein prgK [Escherichia coli E128010]
 gi|323162552|gb|EFZ48402.1| lipoprotein prgK [Escherichia coli E128010]
 gi|323163401|gb|EFZ49228.1| lipoprotein prgK [Escherichia coli E128010]
          Length = 178

 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 97  LAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHI 156
           L    LP    +         ++   +   ++     A+E  + ++++ + GI+++RVH+
Sbjct: 4   LKIYNLP-GKPDIQISQMFPADALVSSPRAEKARLYSAIEQRLEQSLKIMDGIISSRVHV 62

Query: 157 VMP-DMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVL 210
               D G   K       SV+         +     I+  +     ++   +++V+
Sbjct: 63  SYDVDNGDSGKTALPIHISVLAVYEKDINPEIKINDIKRFIVNNSASVQYENISVV 118


>gi|119468195|ref|ZP_01611321.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7]
 gi|119448188|gb|EAW29452.1| flagellar M-ring protein FliF [Alteromonadales bacterium TW-7]
          Length = 170

 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 25  LASVILVPIMLFMAARFFVNS--PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           L  V+ + I+  +    + N   P Y  L   + + D  +I+  L +  +++        
Sbjct: 17  LLLVLGISILFAIIILKWANEDSPVYRPLIQDMRLVDSVKIADVLDQERVNYYADVKNHM 76

Query: 83  ISVPSSMVGKARIHLAAQGL 102
           + V       AR+ LA  G+
Sbjct: 77  LYVNQEQSELARVSLAKIGI 96


>gi|296273387|ref|YP_003656018.1| integral membrane sensor signal transduction histidine kinase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097561|gb|ADG93511.1| integral membrane sensor signal transduction histidine kinase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 282

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 75/258 (29%), Gaps = 37/258 (14%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF-RISDNGSS 82
               + LV I+  +   +F++ P +D L+      +   I   L E NI    I  N   
Sbjct: 40  TFIVITLVLIIFAIVLNYFLSKPLFDPLFASDTNLEK-AIKETLHELNIPASTIQSNAQM 98

Query: 83  I---SVPSSMVGKA-RIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGE 138
           +         + +  RI LA   L        YE+  ++                 L+  
Sbjct: 99  LEKNLKDEKDIRRLNRIKLATNELLKLYDQMEYEIKKEIGRI--------DKFEFLLDEI 150

Query: 139 IARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198
           I  +I     I  + + I                  V                 +L++ A
Sbjct: 151 IENSIDKFEDIKGS-ITIENDIKNISINSDKNGFQKVF---------------DNLLSNA 194

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
           +       +  ++    LL        I  K+L IV   +   + + NK      G    
Sbjct: 195 IKYNCENGIIKINMQNNLLCIFNTGNVIDTKNLFIV--FEQYFQEDSNKT-----GFGLG 247

Query: 259 RSAVVAELNMDTQQIREI 276
            + V    + +   I+  
Sbjct: 248 LNIVKEFCDKNQIDIKIE 265


>gi|301336262|ref|ZP_07224464.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
          Length = 332

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 133 RALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIR 192
           +A + +I + +     I+ A V +   +        A  +  + +            +I 
Sbjct: 67  QAKKEQIEKDLTMFDPILQATVALSQGEETP-----AEISVILSLPYAQTLSPSLVHSIT 121

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
             +  +VP L    +T+ D  G L ++   +   
Sbjct: 122 DYLMRSVPGLTKEQITLSDQQGNLYSSFLEQNTT 155


>gi|15834717|ref|NP_296476.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270284883|ref|ZP_06194277.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270288911|ref|ZP_06195213.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|7190126|gb|AAF38972.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 332

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 128 EITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS 187
           +   ++A + ++   +     I+ A V +   +        A  +  + +          
Sbjct: 62  QSMEIQAKKEQLENDLTMFDPILQATVALSQEEDAP-----AEISVILSLPHALTLSPSL 116

Query: 188 AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
             +I   +  +VP L    +T+ D  G L +    + + 
Sbjct: 117 VHSITDYLMRSVPGLTKEHITLSDQQGNLYSPLLEQSDT 155


>gi|255349112|ref|ZP_05381119.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255503649|ref|ZP_05382039.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|255507328|ref|ZP_05382967.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|289525763|emb|CBJ15244.1| flagellar M-Ring Protein [Chlamydia trachomatis Sweden2]
 gi|296435336|gb|ADH17514.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296439053|gb|ADH21206.1| type III secretion system protein [Chlamydia trachomatis E/11023]
          Length = 334

 Score = 48.8 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191
           ++A + ++ + +     ++ A V +   +        A  +  + +   +        +I
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQSSTLSPSLVHSI 122

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
              +  +VP L    +T+ D  G L +    + N 
Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157


>gi|15605452|ref|NP_220238.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|3329175|gb|AAC68314.1| Flagellar M-Ring Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|297748850|gb|ADI51396.1| FliF [Chlamydia trachomatis D-EC]
 gi|297749730|gb|ADI52408.1| FliF [Chlamydia trachomatis D-LC]
          Length = 334

 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191
           ++A + ++ + +     ++ A V +   +        A  +  + +   +        +I
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
              +  +VP L    +T+ D  G L +    + N 
Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157


>gi|237803149|ref|YP_002888343.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237805070|ref|YP_002889224.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311549|ref|ZP_05354119.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317850|ref|ZP_05359096.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|231273370|emb|CAX10285.1| flagellar M-Ring Protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274383|emb|CAX11178.1| flagellar M-Ring Protein [Chlamydia trachomatis B/Jali20/OT]
 gi|296436264|gb|ADH18438.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296437193|gb|ADH19363.1| type III secretion system protein [Chlamydia trachomatis G/11222]
 gi|296438124|gb|ADH20285.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|297140625|gb|ADH97383.1| type III secretion system protein [Chlamydia trachomatis G/9301]
          Length = 334

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191
           ++A + ++ + +     ++ A V +   +        A  +  + +   +        +I
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
              +  +VP L    +T+ D  G L +    + N 
Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157


>gi|166154061|ref|YP_001654179.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|166154936|ref|YP_001653191.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335263|ref|ZP_07223507.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930049|emb|CAP03532.1| flagellar M-Ring Protein [Chlamydia trachomatis 434/Bu]
 gi|165930924|emb|CAP06486.1| flagellar M-Ring Protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 334

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191
           ++A + ++ + +     ++ A V +   +        A  +  + +   +        +I
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
              +  +VP L    +T+ D  G L +    + N 
Sbjct: 123 TDYLTRSVPGLTKEHITLSDQHGNLYSPLFEQSNT 157


>gi|76789459|ref|YP_328545.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|76167989|gb|AAX50997.1| FliF [Chlamydia trachomatis A/HAR-13]
          Length = 334

 Score = 47.6 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 132 VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAI 191
           ++A + ++ + +     ++ A V +   +        A  +  + +   +        +I
Sbjct: 68  IQAKKEQLEKDLTLFEPVLQATVALSQEEDSL-----AEISVILSLPQASTLSPSLVHSI 122

Query: 192 RHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
              +  +VP L    +T+ D  G L +    + N 
Sbjct: 123 TDYLTRSVPGLTKEYITLSDQHGNLYSPLFEQSNT 157


>gi|255024647|ref|ZP_05296633.1| flagellar MS-ring protein [Listeria monocytogenes FSL J1-208]
          Length = 109

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 2/108 (1%)

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI--ALDSSNQD 507
             + +L    L  +             +       +       +   + I    +  + +
Sbjct: 2   AWIWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFN 61

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             + + +L         +    +L  M + +  R A +++KW     E
Sbjct: 62  FQTDAFDLSEPEIKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 109


>gi|3979709|emb|CAA39520.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 182

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 49/221 (22%)

Query: 343 KSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV---------- 392
                    YK+  L I V+V      +    ++   +    + +I   V          
Sbjct: 1   IHKEIAESPYKVRDLGIQVMVEPP---DAKNTASLSTERQDDIQKILSTVVRTSLDKDET 57

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
                 ++   + I ++   F      ++ T + S + + +     V+ A + ++  +L+
Sbjct: 58  QNQNLSDADINNKIVVSVQPFDGKVNLDTNTEESSGIPLWAYIVGGVLIAAIIVLIIMLI 117

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
                                                    +P + I L   N++     
Sbjct: 118 -------------------------RKKRAQEDEFEEYEYEVPQEPINLPDINEEE---- 148

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                  N         +L  M +   E FAK+LR W   +
Sbjct: 149 -------NETAESVRRKQLEKMAKDKPEDFAKLLRSWLAED 182


>gi|207109938|ref|ZP_03244100.1| flagellar MS-ring protein [Helicobacter pylori HPKX_438_CA4C1]
          Length = 117

 Score = 46.8 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 393 SAATGINSRRGDTITITSMDFLE-NQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLL 451
             A G N  RGD + +++ +F     + ++ T+    M    +   +    + +++  ++
Sbjct: 2   KQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATLSEKIMHKTQKILGSFTPLIKYILVFIV 61

Query: 452 VTFLGLHALRRLHNIDDAKKGEVGGK 477
           +       +            +   +
Sbjct: 62  LFIFYKKVIVPFSERMLEVVPDEDKE 87


>gi|309790976|ref|ZP_07685517.1| hypothetical protein OSCT_1468 [Oscillochloris trichoides DG6]
 gi|308227008|gb|EFO80695.1| hypothetical protein OSCT_1468 [Oscillochloris trichoides DG6]
          Length = 389

 Score = 46.5 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/184 (9%), Positives = 45/184 (24%), Gaps = 3/184 (1%)

Query: 375 SADQGKIDSYLAEINKIVSAATGINSRRG-DTITITSMDFLENQLFNSGTVQVSFMDILS 433
            A +  +      +    +      + RG D   +  +      L +        +  L 
Sbjct: 147 RAQETWLIRQSDLLITPAAVTATFLASRGADPARLRVIPNGATPLADVAPPLRGDLPTLL 206

Query: 434 RHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
                     +  +   +   L +  +R         +       + +   +S+AV    
Sbjct: 207 YIGTLADWQGLHTLIAAVALVLTVRPVRLRIVGSGRSRQRRALAKLAAKLGVSAAVQIEE 266

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAK--ILRKWAR 551
                   D         +    +  N          + +M        A   ++R+   
Sbjct: 267 PVPHAEVADLIASTDVGVAPLEPNDRNVTQGCCPIKVIEYMAAARPVVAANLPVVRELLH 326

Query: 552 SEIE 555
            ++E
Sbjct: 327 EDVE 330


>gi|262274320|ref|ZP_06052131.1| putative type III secretion system lipoprotein precursor EprK
           [Grimontia hollisae CIP 101886]
 gi|262220883|gb|EEY72197.1| putative type III secretion system lipoprotein precursor EprK
           [Grimontia hollisae CIP 101886]
          Length = 177

 Score = 46.1 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 60  VNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            N++ V L++ N+  +++   +G  + V      +AR  LA             +L    
Sbjct: 33  SNKVVVLLNKNNVTAKLASLKDGYGVLVDDEQEMRARELLAYYNF-YFEREDLNDLL--E 89

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + F   S ++ +        E+   +  +  I+   V +                 SV+I
Sbjct: 90  SKFASLSKLENVKSNFLQSRELYNKLSIMPSILRVSVVVT---------GEKAKRTSVLI 140

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208
            +++    ++   I   +   +   D   ++
Sbjct: 141 ISLSEISPENKSNIERFLKGVLNEEDKLTIS 171


>gi|254854546|ref|ZP_05243894.1| predicted protein [Listeria monocytogenes FSL R2-503]
 gi|258607946|gb|EEW20554.1| predicted protein [Listeria monocytogenes FSL R2-503]
          Length = 124

 Score = 46.1 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 31/108 (28%), Gaps = 2/108 (1%)

Query: 450 LLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI--ALDSSNQD 507
             + +L    L  +             +       +       +   + I    +  + +
Sbjct: 17  AWIWWLAGSLLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFN 76

Query: 508 IFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIE 555
             + + +L         +    +L  M + +  R A +++KW     E
Sbjct: 77  FQTDAFDLSEPELKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE 124


>gi|167947313|ref|ZP_02534387.1| flagellar MS-ring protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 96

 Score = 46.1 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGS-FRKIGARPTASVMIRAINPSVYKS 187
           +   RALEGE+ RTI +++ +  A       +           P+ASV I+       + 
Sbjct: 1   MRYQRALEGELTRTIMTLANVETAXGSPGDAENSRCSFASANNPSASVTIKFYPGRTLEK 60

Query: 188 AEAIRHLVAA---AVPNLDMGDVTVLDSTGKL 216
            +      +     +P L+   VTV+D  G+L
Sbjct: 61  GQVECDRASGRLRQLPELETSRVTVVDQKGRL 92


>gi|226359675|ref|YP_002777453.1| non-ribosomal peptide synthetase [Rhodococcus opacus B4]
 gi|226238160|dbj|BAH48508.1| putative non-ribosomal peptide synthetase [Rhodococcus opacus B4]
          Length = 9855

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 15/148 (10%)

Query: 120  FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
             G T F  +    R   GEI   ++S  G+  A V +                    +  
Sbjct: 4062 IGRTDFQVKFRGQRIELGEIETVLRSHPGVTGAAVVVYSDATTGD-------HLVAYVVP 4114

Query: 180  INPSVYKSAEAIRHLVAAAVP-NLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSI 233
                V  +AE IR   + ++P  +    V +LD      +GKL             +   
Sbjct: 4115 APDRVADTAE-IRRHASGSLPSYMVPSAVVLLDEFPLNTSGKLDRKALPAPEFSSDATEY 4173

Query: 234  VQAIQHEIEMNINKALAAFLGVDNFRSA 261
            V A ++E+E  +    A  LG       
Sbjct: 4174 V-APRNEVEQALAGVFADVLGAGRVGVH 4200



 Score = 42.6 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 15/148 (10%)

Query: 120  FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
             G T F  +    R   GEI   ++S  G+  A V +                    +  
Sbjct: 3001 IGRTDFQVKFRGQRIELGEIETVLRSHPGVTGAAVVVYSDATTGD-------HLVAYVVP 3053

Query: 180  INPSVYKSAEAIRHLVAAAVP-NLDMGDVTVLDS-----TGKLLTANEMERNILGKSLSI 233
                V  +AE IR   + ++P  +    V +LD      +GKL             +   
Sbjct: 3054 APDRVADTAE-IRRHASGSLPSYMVPSAVVLLDEFPLNTSGKLDRKALPAPEFTSDATEY 3112

Query: 234  VQAIQHEIEMNINKALAAFLGVDNFRSA 261
            V A    +E  +     A LG++     
Sbjct: 3113 V-APSTSVERAVASVFCAVLGLERVSVR 3139


>gi|89897914|ref|YP_515024.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89331286|dbj|BAE80879.1| type III secretion flagellar biosynthesis M-ring protein
           [Chlamydophila felis Fe/C-56]
          Length = 337

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKS--AEAIR 192
            + +I R +     + +A V + +P           P  SV++       + S    +I 
Sbjct: 71  KKEQIERDLTMFQSVASATVALSLPTEDDP---HIIPQVSVILSTRKNETFSSSLLHSIT 127

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
             +++++P L    +T+ D+ G + +  E
Sbjct: 128 DYLSSSIPGLTKEHITLSDNLGNVYSPGE 156


>gi|213620660|ref|ZP_03373443.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 63

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%)

Query: 318 RKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSAD 377
                  +     ++ E SNYE++     T  +   +ERLS+AVVVN   L +       
Sbjct: 1   TSTNSNNAGPRNTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVNYKTLADGKPLPLT 60

Query: 378 QGK 380
             +
Sbjct: 61  ADQ 63


>gi|166999370|ref|ZP_02265209.1| type III secretion protein [Burkholderia mallei PRL-20]
 gi|238563894|ref|ZP_04610787.1| type III secretion protein [Burkholderia mallei GB8 horse 4]
 gi|238519737|gb|EEP83205.1| type III secretion protein [Burkholderia mallei GB8 horse 4]
 gi|243064444|gb|EES46630.1| type III secretion protein [Burkholderia mallei PRL-20]
          Length = 187

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 49 DNLYVKLEVSDVNRISVALSEANIDFR-ISDNGS---SISVPSSMVGKARIHL 97
            LY  L   D N +  AL +  +D +  + +G    +++V    + KA   L
Sbjct: 36 QELYGGLAERDCNEMMAALLQNGVDAQKKTPDGGKTWTLAVDDKQIVKAMEVL 88


>gi|237735907|ref|ZP_04566388.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381652|gb|EEO31743.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 629

 Score = 44.9 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
             +       L     + +  V  + I     A +    P   +L   L    V +    
Sbjct: 304 FSKLVNKFKGLDTKAKVAVGVVTALVIAGIAFAIYLGVKPD-TSLMPDLTEKTVEQAKEI 362

Query: 67  LSEANI 72
           L E N+
Sbjct: 363 LKEYNV 368


>gi|62185477|ref|YP_220262.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62148544|emb|CAH64315.1| putative flagellar-related protein [Chlamydophila abortus S26/3]
          Length = 337

 Score = 44.9 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIR 192
            + ++ R +     +  A V + +P           P  SV++ +           ++I 
Sbjct: 71  KKEQLERDLTMFQPVAHATVALSLPTEDDP---HIVPQVSVILSSHKNEMFSLPLLQSIT 127

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
             ++++VP L    +T+ D+ G   +  E+  N 
Sbjct: 128 DYLSSSVPGLTKEHITLSDNLGNTYSPGELSTNS 161


>gi|188492157|ref|ZP_02999427.1| lipoprotein PrgK [Escherichia coli 53638]
 gi|188487356|gb|EDU62459.1| lipoprotein PrgK [Escherichia coli 53638]
          Length = 98

 Score = 44.5 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 46  PHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS---ISVPSSMVGKARIHLAAQGL 102
                L   L+    N +   L   NI+    D G +   I V  +    A   L    L
Sbjct: 16  CKQQELLNHLDQQQANDVLAVLQRHNINAEKKDQGKTGFSIYVEPTDFASAVDWLKIYNL 75

Query: 103 P 103
           P
Sbjct: 76  P 76


>gi|167757023|ref|ZP_02429150.1| hypothetical protein CLORAM_02572 [Clostridium ramosum DSM 1402]
 gi|167703198|gb|EDS17777.1| hypothetical protein CLORAM_02572 [Clostridium ramosum DSM 1402]
          Length = 648

 Score = 44.1 bits (102), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
             +       L     + +  V  + I     A +    P   +L   L    V +    
Sbjct: 323 FSKLVNKFKGLDTKAKVGVGVVTALVIAGIAFAIYLGVKPD-TSLMPDLTEKTVEQAKEI 381

Query: 67  LSEANI 72
           L E N+
Sbjct: 382 LKEYNV 387


>gi|302550206|ref|ZP_07302548.1| ABC transporter substrate-binding protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467824|gb|EFL30917.1| ABC transporter substrate-binding protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 272

 Score = 43.8 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 78  DNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            +G++++VP+  V +AR    LAA GL +     G E          +   +   +++  
Sbjct: 130 KSGATVAVPNDTVNEARALKLLAAHGLITLKDGVGSEA-------TPSDITKNPKKLKFK 182

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           E E A+T +S+  + AA V        +          ++++
Sbjct: 183 ELEAAQTPRSLDDVDAAVV----NGNYALESDLKPAKDALVL 220


>gi|298206720|ref|YP_003714899.1| Glutamate-1-semialdehyde aminotransferase [Croceibacter atlanticus
           HTCC2559]
 gi|83849351|gb|EAP87219.1| Glutamate-1-semialdehyde aminotransferase [Croceibacter atlanticus
           HTCC2559]
          Length = 426

 Score = 43.8 bits (101), Expect = 0.082,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 8   LQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV---NRIS 64
            +       LG        S   + +   +A    +N     +L+  LE       N I+
Sbjct: 282 KEIMNHLAPLGPVYQAGTLSGNPLAMAAGLAMLTEIN--TNTDLFKSLEDKTEYLHNGIT 339

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
            AL + NI   I+  GS ISV  + V       A +G   +     + + D       ++
Sbjct: 340 EALEKNNITHTINRQGSMISVHFTDVNVTDFETAVKGNNDTFKRFFHHMLDNGIYIAPSA 399

Query: 125 FMQEITRVRALEGEIARTIQSISGIV 150
           F            ++ +TI++I+   
Sbjct: 400 FESWFLNDALSYEDLDKTIEAIASFK 425


>gi|169349819|ref|ZP_02866757.1| hypothetical protein CLOSPI_00557 [Clostridium spiroforme DSM 1552]
 gi|169293387|gb|EDS75520.1| hypothetical protein CLOSPI_00557 [Clostridium spiroforme DSM 1552]
          Length = 649

 Score = 43.8 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 7   LLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVA 66
           + +      SL     + + + I++ + +     +    P   NL   LE     +    
Sbjct: 322 IKKLINKFKSLSTKAKVGIIAAIVLVVAVIAFFLYANIRPD-TNLMPDLEGKTRKQAIAL 380

Query: 67  LSEANI 72
           L + N+
Sbjct: 381 LKDYNV 386


>gi|218780299|ref|YP_002431617.1| rhomboid family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761683|gb|ACL04149.1| Rhomboid family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 285

 Score = 43.4 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 21/128 (16%)

Query: 48  YDNLY-VKLEVSDVNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAA---QG 101
              L+   L  +  N   + L  + I +    ++ G  I VP     +A   + A   + 
Sbjct: 1   MTPLFIKNLPDNKANLYGLILEASKIAYEFKRAEEGWQILVPQKDHDRAFAQITAYTGEN 60

Query: 102 LPSSSSNSGYELFDKVNSF-----------GLTSFMQEITRVRALEGEIARTI---QSIS 147
           LP       +  F   +             G   F +    +   +G +A  I   Q   
Sbjct: 61  LPQDLDEPEWPQFKTYSGLWAAGLLAVFYAGTGPFSEN-RWLLDQKGAVAEKILDGQIWR 119

Query: 148 GIVAARVH 155
            + A  +H
Sbjct: 120 AVTALCLH 127


>gi|167589966|ref|ZP_02382354.1| flagellar MS-ring protein [Burkholderia ubonensis Bu]
          Length = 86

 Score = 43.4 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
            ++ G+    P P  + V  GL   +  A +     +     N + R      +++    
Sbjct: 9   DQLHGRDRRGPAPEDAVVLDGLPAPEKAAANEDADALLLGFENEKHR-----YERNLDYA 63

Query: 532 LHMIEINEERFAKILRKWARSE 553
             +   + +  A +++ W   E
Sbjct: 64  RTIARQDPKIVATVVKSWVNDE 85


>gi|144897188|emb|CAM74052.1| Flagellar biosynthesis/type III secretory pathway lipoprotein
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 53

 Score = 43.4 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 20/51 (39%)

Query: 503 SSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
              +++ +       ++   V   S  ++  +++ + E    I+R W   E
Sbjct: 2   GGEEEVIADELIDIDKVEGRVKASSIRKIGEIVDKHPEEALSIIRNWLYQE 52


>gi|300728048|ref|ZP_07061421.1| cell adhesion domain protein [Prevotella bryantii B14]
 gi|299774650|gb|EFI71269.1| cell adhesion domain protein [Prevotella bryantii B14]
          Length = 508

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 65/251 (25%), Gaps = 38/251 (15%)

Query: 86  PSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQS 145
           P+    +A+I LA             +   +  +        +I     LE ++AR I  
Sbjct: 128 PADQSSEAKIALA-------------DYMTRQQNISRPEGGSDIQMQ--LERKMARVIVR 172

Query: 146 ISGIVA-------ARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAA 198
           ISG  +          ++ +    S  + G    +S  I                LV   
Sbjct: 173 ISGFGSQYRDDQKTVSNVSIYSEASGIENGNSTGSSTEITPYAQGDGGQGSTYTALVVPG 232

Query: 199 VPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNF 258
             +     +T+ D  G  L    +     G S                      +G +  
Sbjct: 233 YGDSGARFITLTDGEGSTLLVKGIPELEAGNSY----------------TFNLVVGKNRI 276

Query: 259 RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR 318
             A V   +  T +I       +     +       +          ++V    P  +  
Sbjct: 277 EVASVTVQDWTTGEILAGGQAQEVSASVTAITLNKTETQLGVGNTETLSVSSVTPDNATD 336

Query: 319 KVPLPRSLENT 329
           +     S   +
Sbjct: 337 QTVTWSSDNPS 347


>gi|297154949|gb|ADI04661.1| putative type I polyketide synthase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1649

 Score = 43.0 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 13/157 (8%)

Query: 145  SISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAA------- 197
             +   V   VH  +  +  +        + +++        +  E IR L AA       
Sbjct: 1294 EMPSAVRQSVHQALALVQKWLADERFAASRLVVVTGGAVATEPDEGIRDLAAAPVWGLLR 1353

Query: 198  AVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAF----- 252
            +  + + G   +LD  G  L+   +   +      +           + + +A       
Sbjct: 1354 SAQSENPGRFVLLDIDGNALSPETLVSAVAADEPQVAVRAGRLRVPRLERMVAPMADAIP 1413

Query: 253  -LGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
              G      +        T    E V  P  ++    
Sbjct: 1414 SFGGGTVLVSRTNSRTAGTLHRVERVAIPLGRLRGER 1450


>gi|156974779|ref|YP_001445686.1| hypothetical protein VIBHAR_02497 [Vibrio harveyi ATCC BAA-1116]
 gi|156526373|gb|ABU71459.1| hypothetical protein VIBHAR_02497 [Vibrio harveyi ATCC BAA-1116]
          Length = 566

 Score = 42.2 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 75/272 (27%), Gaps = 19/272 (6%)

Query: 143 IQSISGIV-AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPN 201
           I  I  +  ++R  I   +   F     +                 A  I  L +A V  
Sbjct: 229 INDIDVVNTSSRAEIDFINKTLFSPDLGKDFTFTFETVDG------APKIVTLTSADVAT 282

Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA--AFLGVDNF- 258
             + +V ++D+ G  +   +     +     ++ A       N+++ +    + G     
Sbjct: 283 SPVRNVKIIDNDGTKVGYMQYNAFEVTAQQPLINAFNQLSAANVDEIIMDLRYNGGGLVW 342

Query: 259 -RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR--SETSQPESAVTVEQNMPHV 315
             + V   L              + K+  S  +  +              +  +  +P +
Sbjct: 343 QSAQVGYMLAGTHSSSTFAELIYNDKIMNSGEVENNVYSFVDTEIDWGKGILTDNALPTL 402

Query: 316 SDRKVPLPRSLENTDKKEEQSN------YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           S ++V +  +       E   N       E+      TT   Y          +      
Sbjct: 403 SAKRVYVLTTDNTASSSELLINGLRGIDVEVVQIGTTTTGKPYGFSPQQNCGNMYYTIQF 462

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
           +           D +      +VS+  G + +
Sbjct: 463 KSSNAKGFGDFADGFTPTAKSLVSSNIGTDEK 494


>gi|254285272|ref|ZP_04960237.1| VcsJ2 [Vibrio cholerae AM-19226]
 gi|71480628|gb|AAZ32250.1| VcsJ2 [Vibrio cholerae non-O1/non-O139]
 gi|150424544|gb|EDN16480.1| VcsJ2 [Vibrio cholerae AM-19226]
          Length = 177

 Score = 42.2 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 16/181 (8%)

Query: 31  VPIMLFMAARFFVNSPHYDNLYVKLEVSD-VNRISVALSEANIDFRISD--NGSSISVPS 87
           +  ++F       +      +  K E +D  N++ V L++  ++ +++   +G  + V  
Sbjct: 4   ILFLIFALIVSGCSESGMTQV-AKFESADLSNKVIVLLNKNQVNAKLTQLKDGYGVLVDD 62

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
           +   KAR  LA             +L    + F   S ++ +        EI   +  + 
Sbjct: 63  AQEMKARELLAYYNF-YFEREDLNDLL--ESKFASLSKLEMVKSNFLQSREIYNKLSIMP 119

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
            I+   V +                 SV+I +++    ++   I   +   +   D   +
Sbjct: 120 NILRVSVVVT---------GEKAKRISVLILSLSEISAENKSNIERFLKGVLNEEDKLTI 170

Query: 208 T 208
           +
Sbjct: 171 S 171


>gi|304412109|ref|ZP_07393719.1| putative type III secretion system lipoprotein precursor EprK
           [Shewanella baltica OS183]
 gi|307306004|ref|ZP_07585750.1| putative type III secretion system lipoprotein precursor EprK
           [Shewanella baltica BA175]
 gi|304349659|gb|EFM14067.1| putative type III secretion system lipoprotein precursor EprK
           [Shewanella baltica OS183]
 gi|306911497|gb|EFN41923.1| putative type III secretion system lipoprotein precursor EprK
           [Shewanella baltica BA175]
          Length = 181

 Score = 42.2 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 23/180 (12%)

Query: 36  FMAARFFVNSPHYDNLYVKLEVSDV-NRISVALSEANIDFR--ISDNGSSISVPSSMVGK 92
            +    F  +          + +D  N++ V L+   +     IS +   + V    + +
Sbjct: 7   IVFLVLFGCNDQGRVEVANFDSADAANKVVVLLARYQVSASLSISKDRHLVYVDKDNLAQ 66

Query: 93  ARIHLAAQGLPSSSSNSGYELFDKV----NSFGLTSFMQEITRVRALEGEIARTIQSISG 148
           AR  L       +  N  +E  D      + F   S ++ +        EI   I  I  
Sbjct: 67  AREVL-------TKFNFYFEREDLNDLLESKFASLSKLEIVKGNLLESREIYNKISVIPN 119

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208
           ++ + V +                 SV+I + +    ++   I   +   V  LD   V+
Sbjct: 120 VLRSSVIVT---------GEKNKRVSVIIFSFDEIERENKLNIERFLKGLVSELDTLTVS 170


>gi|229529191|ref|ZP_04418581.1| hypothetical protein VCG_002284 [Vibrio cholerae 12129(1)]
 gi|229332965|gb|EEN98451.1| hypothetical protein VCG_002284 [Vibrio cholerae 12129(1)]
          Length = 177

 Score = 42.2 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 64/181 (35%), Gaps = 16/181 (8%)

Query: 31  VPIMLFMAARFFVNSPHYDNLYVKLEVSD-VNRISVALSEANIDFRISD--NGSSISVPS 87
           + +++F       +      +  K E +D  N++ V L++  ++ +++   +G  + V  
Sbjct: 4   LLLLIFALIVSGCSESGMTQV-AKFESADLSNKVIVLLNKNQVNAKLTQLKDGYGVLVDD 62

Query: 88  SMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSIS 147
           +   KAR  LA             +L    + F   S ++ +        EI   +  + 
Sbjct: 63  AQEMKARELLAYYNF-YFEREDLNDLL--ESKFASLSKLEMVKSNFLQSREIYNKLSIMP 119

Query: 148 GIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV 207
            I+   V +                 SV+I +++    ++   I   +   +   D   +
Sbjct: 120 NILRVSVVVT---------GEKAKRISVLILSLSEISAENKSNIERFLKGVLNEEDKLTI 170

Query: 208 T 208
           +
Sbjct: 171 S 171


>gi|126175629|ref|YP_001051778.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS155]
 gi|125998834|gb|ABN62909.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS155]
          Length = 537

 Score = 42.2 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65
             +S  +L   RI  +   +L  +++ +   F++     + L+  L+ +++ R+      
Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216

Query: 66  ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103
            L+     +   +  +G        +  +AR  LA            +  LP        
Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271

Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161
             + +  G+ELF       ++    ++   R     +  T++    I      +  + + 
Sbjct: 272 NQNKTIRGFELFANDQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
               ++     ++ +         K+ +     +
Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362


>gi|217972118|ref|YP_002356869.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS223]
 gi|217497253|gb|ACK45446.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS223]
          Length = 537

 Score = 42.2 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65
             +S  +L   RI  +   +L  +++ +   F++     + L+  L+ +++ R+      
Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216

Query: 66  ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103
            L+     +   +  +G        +  +AR  LA            +  LP        
Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271

Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161
             + +  G+ELF       ++    ++   R     +  T++    I      +  + + 
Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
               ++     ++ +         K+ +     +
Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362


>gi|213162219|ref|ZP_03347929.1| putative pathogenicity island lipoprotein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
          Length = 80

 Score = 42.2 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 1/74 (1%)

Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
               N   ++   ++       E  I   +  + G++ A+V I +P         +  + 
Sbjct: 1   MFPANQLVVSPQEEQQKINFLKEQRIEGMLSQMEGVINAKVTIALPTYD-EGSNASPSSV 59

Query: 174 SVMIRAINPSVYKS 187
           +V I+       ++
Sbjct: 60  AVFIKYSPQVNMEA 73


>gi|192362442|ref|YP_001980541.1| Rhsfamily protein [Cellvibrio japonicus Ueda107]
 gi|190688607|gb|ACE86285.1| Rhsfamily protein [Cellvibrio japonicus Ueda107]
          Length = 1401

 Score = 42.2 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 66/226 (29%), Gaps = 2/226 (0%)

Query: 149 IVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208
           I+ AR H++        K       +++ R    +  ++    +      V       VT
Sbjct: 535 IIDARAHLLPVVEQYTWKNTYDAAGNLLTRRDPYNKGETYTYTKTGDLETVIAAGGSKVT 594

Query: 209 VL-DSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN 267
           +  ++ G+ LT  +    +          +    + N NK+  A+        +V  E N
Sbjct: 595 LTSNANGQPLTITDDNNKVTKLQYDKAGRLTVTTDANGNKSQTAYDAQGRVFRSVDGEGN 654

Query: 268 MDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
                  E +     +      L +   R+   Q          +       +    +  
Sbjct: 655 TTQYNYVEDLLR-SIQYPTYKELLEYDNRNRVKQTTQQANSRNYIRKHGYDPLGNITNST 713

Query: 328 NTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
           +    E    Y++ ++    T     +   S     N  ++ +  G
Sbjct: 714 DAQDNETVYEYDVLSRVKKITDAEGGVTEFSYDARDNLLQVKDPEG 759


>gi|283851497|ref|ZP_06368777.1| DNA-directed RNA polymerase, beta' subunit [Desulfovibrio sp.
            FW1012B]
 gi|283573031|gb|EFC21011.1| DNA-directed RNA polymerase, beta' subunit [Desulfovibrio sp.
            FW1012B]
          Length = 1386

 Score = 41.8 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 72/268 (26%), Gaps = 11/268 (4%)

Query: 168  GARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG----KLLTANEME 223
                 +SV  +          +++ +     +     G V+V+D  G    +    +  +
Sbjct: 938  REIAQSSVTAQHNGRVSLSRVKSVVNQQGHTIMMGKSGQVSVVDDQGRERERYSLPSGSK 997

Query: 224  RNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQ-----IREIVY 278
               +         +  E +      +    G+  F   V  +   +          + + 
Sbjct: 998  LYAVAGQEVKKDQLLAEWDPFNEPFVTDVAGIVKFTDIVEGKTYQEKVDDATKRATQTII 1057

Query: 279  DPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNY 338
            +  +   +      D + +   +P +      +MP  +       + +   D    +   
Sbjct: 1058 EYRTTSFKPAVSIVDERGTPKVRPGTNTLAVFSMPVGAILMARDGQEVFEGDIIARKP-R 1116

Query: 339  EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI-NKIVSAATG 397
            E +             E   +        ++E+ G  +   +       I       A  
Sbjct: 1117 ESSKTKDIVGGLPRVAELFEVRKPKEMAVVSEIDGIISAGPETKGKRKIIVTPEAGDAKE 1176

Query: 398  INSRRGDTITITSMDFLENQLFNSGTVQ 425
                RG  +T+   DF+E     +    
Sbjct: 1177 YLIPRGKHVTVQEGDFVEAGELLTEGYP 1204


>gi|297198402|ref|ZP_06915799.1| ABC transporter substrate-binding protein [Streptomyces sviceus
           ATCC 29083]
 gi|197716092|gb|EDY60126.1| ABC transporter substrate-binding protein [Streptomyces sviceus
           ATCC 29083]
          Length = 276

 Score = 41.8 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 13/118 (11%)

Query: 78  DNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            +G++++VP+  V +AR    LAA GL +     G E              +    ++  
Sbjct: 134 KSGATVAVPNDAVNEARSLKLLAANGLITLKDGVGSEA-------TPQDIAKNPKNLKFK 186

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRH 193
           E E A+T++S+  + AA V        +          ++++ +   S Y +  A++ 
Sbjct: 187 EVEAAQTVRSLDDVDAAVV----NGNYAISADLKPAKDALVLESAKNSPYGNFLAVKD 240


>gi|304411049|ref|ZP_07392665.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS183]
 gi|307301828|ref|ZP_07581586.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica BA175]
 gi|304350584|gb|EFM14986.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS183]
 gi|306913866|gb|EFN44287.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica BA175]
          Length = 537

 Score = 41.8 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65
             +S  +L   RI  +   +L  +++ +   F++     + L+  L+ +++ R+      
Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216

Query: 66  ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103
            L+     +   +  +G        +  +AR  LA            +  LP        
Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271

Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161
             + +  G+ELF       ++    ++   R     +  T++    I      +  + + 
Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
               ++     ++ +         K+ +     +
Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362


>gi|113971431|ref|YP_735224.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella sp. MR-4]
 gi|113886115|gb|ABI40167.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella sp. MR-4]
          Length = 537

 Score = 41.8 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65
             +S  +L   RI  +   +L  +++ +   F++     + L+  L+ +++ R+      
Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216

Query: 66  ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103
            L+     +   +  +G        +  +AR  LA            +  LP        
Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNDLMLSDLLPQHADFLLT 271

Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161
             + +  G+ELF       ++    ++   R     +  T++    I      +  + + 
Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
               ++     ++ +         K+ +     +
Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362


>gi|240140468|ref|YP_002964947.1| hypothetical protein MexAM1_META1p3990 [Methylobacterium extorquens
           AM1]
 gi|240010444|gb|ACS41670.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 733

 Score = 41.8 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 59/212 (27%), Gaps = 3/212 (1%)

Query: 341 NTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINS 400
             +      ++  L  + +   + +  +  V GR  D   + +  A+ +     AT  N 
Sbjct: 486 TERVTKIMAEDGSLTDVQVDPTLKQPVMKMVDGRPVDDEGLKAAQADPDLRDKVATIFNP 545

Query: 401 RRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL 460
             G    + S   +            + +  + +  + +      ++             
Sbjct: 546 NVG-KYAVESD--IGPAYATRRQEAFAALSDMLKTNSDLAKIAGDILFKSADFPGADEVA 602

Query: 461 RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN 520
            R+           G     +         T L+   + AL+       +   + + R  
Sbjct: 603 ERIKRTIPPNILGQGVPPAEAELQQKVQQLTALLQQMDAALNEKQAKEAADYEHREDRHT 662

Query: 521 SYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
               +    R+  +   + E F  ++R+    
Sbjct: 663 LDSYRAETDRMKALAASDPEAFRPVIRQLIGD 694


>gi|153831915|ref|ZP_01984582.1| peptidase S41 [Vibrio harveyi HY01]
 gi|148871913|gb|EDL70736.1| peptidase S41 [Vibrio harveyi HY01]
          Length = 532

 Score = 41.8 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 76/272 (27%), Gaps = 19/272 (6%)

Query: 143 IQSISGIV-AARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPN 201
           I  I  +  ++R  I   +   F     +                 A  I  L +A V  
Sbjct: 195 INDIDVVNTSSRAEIDFINKTLFSPDLGKDFTFTFETVDG------APKIVTLTSADVAT 248

Query: 202 LDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALA--AFLGVDNF- 258
             + +V ++D+ G  +   +     +     ++ A       N+++ +    + G     
Sbjct: 249 SPVRNVKIIDNDGTKVGYMQYNAFEVTAQQPLINAFNQLSAANVDEIIMDLRYNGGGLVW 308

Query: 259 -RSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQR--SETSQPESAVTVEQNMPHV 315
             + V   L              + K+  S  +  +              +  +  +P +
Sbjct: 309 QSAQVGYMLAGTHSTSTFAELIYNDKIMNSGEVENNVYNFVDTEIDWGKGILTDNALPTL 368

Query: 316 SDRKVPLPRSLENTDKKEEQSN------YEINTKSIATTHDNYKLERLSIAVVVNKGRLT 369
           S ++V +  +       E   N       E+      TT   Y          +      
Sbjct: 369 SAKRVYVLTTDNTASSSELLINGLRGIDVEVVQIGTTTTGKPYGFSPQQNCGNMYYTIQF 428

Query: 370 EVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
           +           D +      +VS+  GI+ +
Sbjct: 429 KSSNAKGFGDFADGFTPTAKSLVSSNIGIDDK 460


>gi|160874058|ref|YP_001553374.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS195]
 gi|160859580|gb|ABX48114.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS195]
 gi|315266289|gb|ADT93142.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS678]
          Length = 537

 Score = 41.8 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65
             +S  +L   RI  +   +L  +++ +   F++     + L+  L+ +++ R+      
Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216

Query: 66  ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103
            L+     +   +  +G        +  +AR  LA            +  LP        
Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271

Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161
             + +  G+ELF       ++    ++   R     +  T++    I      +  + + 
Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
               ++     ++ +         K+ +     +
Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362


>gi|218680631|ref|ZP_03528528.1| flagellar MS-ring protein [Rhizobium etli CIAT 894]
          Length = 98

 Score = 41.8 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%)

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              E  G  +    P + A    LM          + +      +     N  V +  + 
Sbjct: 13  ATPEAAGLELPDFAPAAGAPGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPER 72

Query: 530 RLLHMIEINEERFAKILRKWARSEIE 555
           +L  M+EINEER AKILRKWA  +  
Sbjct: 73  KLSRMVEINEERAAKILRKWAIDDAA 98


>gi|152999440|ref|YP_001365121.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS185]
 gi|151364058|gb|ABS07058.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella baltica OS185]
          Length = 537

 Score = 41.8 bits (96), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 70/214 (32%), Gaps = 37/214 (17%)

Query: 10  FFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS----V 65
             +S  +L   RI  +   +L  +++ +   F++     + L+  L+ +++ R+      
Sbjct: 158 LSQSVGALIDKRIPEIIMTVLGVLLMGVLVAFWMGRQVREMLF-GLQPAEIGRLFVEQDA 216

Query: 66  ALS--EANIDFRISDNGSSISVPSSMVGKARIHLA------------AQGLP-------- 103
            L+     +   +  +G        +  +AR  LA            +  LP        
Sbjct: 217 ILNTVRMGVVA-LDADGRI----RKLNQRAREILALSPTCQPNTLMLSDLLPQHADFLLT 271

Query: 104 -SSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIV-MPDM 161
             + +  G+ELF       ++    ++   R     +  T++    I      +  + + 
Sbjct: 272 NQNKTIRGFELFANEQWLVMSRVPFQV---RDQNDGLLLTMRPADEIERLSQQLAKVQEF 328

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
               ++     ++ +         K+ +     +
Sbjct: 329 AEMLRVQTHDYSNKLHTLGALLQLKAYDKAVEFI 362


>gi|29840662|ref|NP_829768.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29835012|gb|AAP05646.1| secretory protein, YscJ/FliF family [Chlamydophila caviae GPIC]
          Length = 337

 Score = 41.8 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 135 LEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP--SVYKSAEAIR 192
            + +I R +     +  A V + +P           P  SV++ +            +I 
Sbjct: 71  KKEQIERDLTMFHSVANATVALSLPTEDDP---DIIPQVSVILSSHKDEVFSSSLLLSIV 127

Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNI 226
             +++++P L    +T+ D+ G   +  E   ++
Sbjct: 128 DYLSSSIPGLAKEHITLSDNLGNTYSPGEFSNSL 161


>gi|253990936|ref|YP_003042292.1| hypothetical protein PAU_03462 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782386|emb|CAQ85550.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 185

 Score = 41.1 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 27/165 (16%)

Query: 60  VNRISVALSEANIDFRI--SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            N++ V L+++ I+  +  + NG SI V  + V +AR  L       S  N  +E  D  
Sbjct: 36  ANKVLVLLNQSQINAELVSTKNGYSIFVDETHVMEARTLL-------SRFNFYFETEDLN 88

Query: 118 ----NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
               + F   S ++ I        EI   +  +  ++ + V +   +             
Sbjct: 89  DLLESKFASLSKLENIKSNLLEGREIYNKLNVVPDVLRSNVMVSGSESK---------RV 139

Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDV-----TVLDST 213
           SV+I +I      S  +I   +   V   D+  V     +++D  
Sbjct: 140 SVLIISIKELDATSKSSIEKFLKGIVSERDILTVEYLVQSIVDEK 184


>gi|209522667|ref|ZP_03271225.1| outer membrane adhesin like proteiin [Arthrospira maxima CS-328]
 gi|209496716|gb|EDZ97013.1| outer membrane adhesin like proteiin [Arthrospira maxima CS-328]
          Length = 3441

 Score = 41.1 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 66/270 (24%), Gaps = 33/270 (12%)

Query: 151  AARVHIVMPDMGSFRKIGARPT-----ASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMG 205
            +A V + + +           T        +    N S                  L   
Sbjct: 1694 SATVFLTIQENQPPTANDDNATVRTGNTVTINVLNNDSDPDGV-------------LVPD 1740

Query: 206  DVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
             VTV+D     L            +++                    +  D+   +  A 
Sbjct: 1741 TVTVVD-----LPDYGTITVNPNGTITYSHDGSSTNSDR----FTYTVEDDDGAISNPAT 1791

Query: 266  LNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAV---TVEQNMPHVSDRKVPL 322
            +++  Q+ +    + D+   R+         +  S P+  +   TV              
Sbjct: 1792 VSLTIQENQPPTANDDNATVRTGNTVTINVLNNDSDPDGVLVPDTVTVVDSPNYGNITVN 1851

Query: 323  PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKID 382
            P            +N   +  +     ++  +   S  V +             +   + 
Sbjct: 1852 PNGTITYSHDGSSTN--SDRFTYTVEDNDGAISN-SATVFLTIEENQPPTANDDNATVLI 1908

Query: 383  SYLAEINKIVSAATGINSRRGDTITITSMD 412
                 IN + + +        DT+T+    
Sbjct: 1909 GNTVTINVLNNDSDPDGVLVPDTVTVVDSP 1938


>gi|167717601|ref|ZP_02400837.1| flagellar MS-ring protein [Burkholderia pseudomallei DM98]
          Length = 79

 Score = 41.1 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 3/81 (3%)

Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL 532
                      P       GL   D   L   +++  +       R      +++     
Sbjct: 1   PAAAAVPALDGPDDVLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYAR 57

Query: 533 HMIEINEERFAKILRKWARSE 553
            +   + +  A +++ W   E
Sbjct: 58  TIARQDPKIVATVVKNWVSDE 78


>gi|167822257|ref|ZP_02453728.1| flagellar MS-ring protein [Burkholderia pseudomallei 9]
          Length = 80

 Score = 41.1 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 3/82 (3%)

Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531
                       P       GL   D   L   +++  +       R      +++    
Sbjct: 1   EPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYA 57

Query: 532 LHMIEINEERFAKILRKWARSE 553
             +   + +  A +++ W   E
Sbjct: 58  RTIARQDPKIVATVVKNWVSDE 79


>gi|134103133|ref|YP_001108794.1| two-component system sensor kinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003924|ref|ZP_06561897.1| two-component system sensor kinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915756|emb|CAM05869.1| two-component system sensor kinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 414

 Score = 40.7 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 30/114 (26%)

Query: 435 HFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLM 494
               ++     LV  L++   G+ AL R+             +S       +        
Sbjct: 154 WPVVLVTGTAQLVIALVLLLWGVPALARVQARATLALLSPSRRSATEERLAARVDELAQT 213

Query: 495 PNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRK 548
               +    +         +  ++                +  + E  A++LR+
Sbjct: 214 RAGAVEAHGAELRRIERDLHDGAQAQLVALAMRLGVAEKAVRDDPETTARLLRE 267


>gi|167574673|ref|ZP_02367547.1| flagellar MS-ring protein [Burkholderia oklahomensis C6786]
          Length = 88

 Score = 40.7 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 4/87 (4%)

Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526
                  + G S         + +   +P+    L +    +                + 
Sbjct: 1   PAVAAPALAGGSTAGGRESEPSASDAALPDGRPRLANVMPFLDDVELPPAD----SGVEV 56

Query: 527 SDLRLLHMIEINEERFAKILRKWARSE 553
               L  + +   ER A+++++W +S 
Sbjct: 57  LIDHLRTLSQKAPERVAEVVKQWIQSN 83


>gi|331091909|ref|ZP_08340741.1| hypothetical protein HMPREF9477_01384 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402808|gb|EGG82375.1| hypothetical protein HMPREF9477_01384 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1856

 Score = 40.7 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/208 (8%), Positives = 57/208 (27%), Gaps = 15/208 (7%)

Query: 162 GSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANE 221
            +  K          +           +A R+ + A   +L    + V+D+ G ++   +
Sbjct: 768 DANGKPITDTKGRSSVTTAEKEAKLQVKADRNEIKANGTDLSYLQIDVVDAKGNIVPNAD 827

Query: 222 M---------------ERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAEL 266
                           +        S     +     +    + +       +  V AE 
Sbjct: 828 DKVKVEVTGNGTLVGLDNGWQTDHDSYKGKERRVYNGSGIAIVQSTKNAGEIKVKVSAEG 887

Query: 267 NMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSL 326
             +         D     ++ +  S   +++   +  +  ++ + +           + +
Sbjct: 888 LGEKTVTLNTTADTTGGEQQVVVDSFFMEKNYYVKVGNKPSLPKTIEVRYSNGTKEQKPV 947

Query: 327 ENTDKKEEQSNYEINTKSIATTHDNYKL 354
           +     +EQ+N         T  +  ++
Sbjct: 948 KWNTISDEQTNKAGAFTVKGTVENAGEV 975


>gi|238764041|ref|ZP_04624996.1| Type III secretion system apparatus lipoprotein [Yersinia
          kristensenii ATCC 33638]
 gi|238697712|gb|EEP90474.1| Type III secretion system apparatus lipoprotein [Yersinia
          kristensenii ATCC 33638]
          Length = 55

 Score = 40.7 bits (93), Expect = 0.69,   Method: Composition-based stats.
 Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 34 MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
          +  +     ++    + LY  L   + N++   L    I      
Sbjct: 5  VALLLVVMSLSGCGME-LYSGLSEGEANQMLALLMLNQIKAEKRP 48


>gi|118589579|ref|ZP_01546984.1| putative DNA alkylation repair protein [Stappia aggregata IAM
           12614]
 gi|118437665|gb|EAV44301.1| putative DNA alkylation repair protein [Stappia aggregata IAM
           12614]
          Length = 376

 Score = 40.7 bits (93), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 19/59 (32%)

Query: 500 ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRY 558
           AL             L+     YV +     L  + + + +  A I + W +   + R 
Sbjct: 178 ALVVDPTPTLPLLEALKDDPEDYVRRSVANHLNDIAKDHPDLVADIAKSWLKDAEKPRE 236


>gi|42524410|ref|NP_969790.1| hypothetical protein Bd3014 [Bdellovibrio bacteriovorus HD100]
 gi|39576619|emb|CAE80783.1| fliG [Bdellovibrio bacteriovorus HD100]
          Length = 577

 Score = 40.7 bits (93), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 46/166 (27%), Gaps = 2/166 (1%)

Query: 381 IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
                  I +++++   +++  GD++T+  ++   +         +  +  L+    T+I
Sbjct: 114 NPETEKIIKELLTSKLHLDATAGDSVTVKRIELPADPPKAEPKPDI--LPELTWKMWTLI 171

Query: 441 NALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIA 500
             +  L  + L+ +       +    +  +  E                          A
Sbjct: 172 VIMSLLALSGLMFWAWRRGRAQDPRKELKENHEYKHTEKDQDGEEKPEEVVAAATEPAAA 231

Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
                Q      +     I +   + +   +           A +L
Sbjct: 232 AVVEPQFNMDAVKQHILAIAAQYPQLASRAVTEFTLNESAGDASLL 277


>gi|325676776|ref|ZP_08156449.1| exopolyphosphatase [Rhodococcus equi ATCC 33707]
 gi|325552324|gb|EGD22013.1| exopolyphosphatase [Rhodococcus equi ATCC 33707]
          Length = 8934

 Score = 40.7 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 15/146 (10%)

Query: 120  FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
             G T F  ++   R   GEI   ++   G+  AR  + +   G   ++       V+  A
Sbjct: 3261 LGRTDFQVKVRGFRIELGEIESALRRFPGV--ARAVVTVDGSGPASRLV----GYVVPEA 3314

Query: 180  INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-----STGKLLTANEMERNILGKSLSIV 234
                             A+   +    V VLD       GKL        +   ++    
Sbjct: 3315 GAAVDPADVTEFVGTFLASY--MVPSAVMVLDALPLGPAGKLDRRALPAPDFGARTAGRA 3372

Query: 235  QAIQHEIEMNINKALAAFLGVDNFRS 260
               + E    +    A  LG+D+   
Sbjct: 3373 PRSERE--RQLADLFAEVLGLDSVGV 3396


>gi|312139771|ref|YP_004007107.1| non-ribosomal peptide synthetase [Rhodococcus equi 103S]
 gi|311889110|emb|CBH48423.1| putative non-ribosomal peptide synthetase [Rhodococcus equi 103S]
          Length = 8934

 Score = 40.7 bits (93), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 15/146 (10%)

Query: 120  FGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA 179
             G T F  ++   R   GEI   ++   G+  AR  + +   G   ++       V+  A
Sbjct: 3261 LGRTDFQVKVRGFRIELGEIESALRRFPGV--ARAVVTVDGSGPASRLV----GYVVPEA 3314

Query: 180  INPSVYKSAEAIRHLVAAAVPNLDMGDVTVLD-----STGKLLTANEMERNILGKSLSIV 234
                             A+   +    V VLD       GKL        +   ++    
Sbjct: 3315 GAAVDPADVTEFVGTFLASY--MVPSAVMVLDALPLGPAGKLDRRALPAPDFGARTAGRA 3372

Query: 235  QAIQHEIEMNINKALAAFLGVDNFRS 260
               + E    +    A  LG+D+   
Sbjct: 3373 PRSERE--RQLADLFAEVLGLDSVGV 3396


>gi|322417797|ref|YP_004197020.1| hypothetical protein GM18_0255 [Geobacter sp. M18]
 gi|320124184|gb|ADW11744.1| conserved repeat domain protein [Geobacter sp. M18]
          Length = 2257

 Score = 40.7 bits (93), Expect = 0.76,   Method: Composition-based stats.
 Identities = 32/306 (10%), Positives = 84/306 (27%), Gaps = 21/306 (6%)

Query: 114  FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTA 173
               V+ FGL+ F Q     R  E    R + +   +   R  + +      +     P  
Sbjct: 1314 LKGVDGFGLSRFEQNAKLARTGEIAAIRLVTAEGNVADGRTPVRVQVQLLDQDGKPVPAN 1373

Query: 174  SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSI 233
            + +                +L   ++       +  +D+ G +         +    L+ 
Sbjct: 1374 AQLALKGGELRP-------YLEPGSLAVSAGTGMIAVDAQGWMKFQPVTASGLYRTQLAY 1426

Query: 234  VQ---AIQHEIEMNINK-----ALAAFLGVDNFRSAVVAELNMDTQQI----REIVYDPD 281
             +    I+  ++  +            +G +     +    +   ++       + +   
Sbjct: 1427 NKATLDIETYVKPKMRNWILVGLAEGTVGYNTATGHMQNLKDAGAEEHLYDDERLAFYAK 1486

Query: 282  SKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEIN 341
              V+    L+     ++ S   S  ++ QN+   +   +    + +  D    +  +   
Sbjct: 1487 GSVKGEWLLTMSYDSAKKSTGVSGNSLFQNIDPNAFYTLYGDATTQAYDASSRRKVFL-- 1544

Query: 342  TKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSR 401
                   +         ++V         + G   +    D  L         A   +  
Sbjct: 1545 KVERDQFNAMLGDFDTGLSVTELSRYSRRLNGVKTEYRSKDYELTAFGSETGQAFVKDEL 1604

Query: 402  RGDTIT 407
            RGD  +
Sbjct: 1605 RGDGTS 1610


>gi|190894993|ref|YP_001985286.1| D-amino acid dehydrogenase small subunit [Rhizobium etli CIAT 652]
 gi|218516485|ref|ZP_03513325.1| D-amino acid dehydrogenase small subunit [Rhizobium etli 8C-3]
 gi|190700654|gb|ACE94736.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli
           CIAT 652]
 gi|327193284|gb|EGE60190.1| D-amino-acid dehydrogenase protein, small subunit [Rhizobium etli
           CNPAF512]
          Length = 422

 Score = 40.3 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 51  LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109
           L+   +  D +     AL+   I + + D    I V  ++    R  +   GL +    +
Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDQDGCIRVEPALRH-VREKIVG-GLLTPKDET 197

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           G + F   N+    +    +            TI+++  + A RV  V+ D    R+   
Sbjct: 198 G-DCFKFTNALAAQAEALGVRFAY------GTTIKALD-VEAGRVRGVVTDRDPDRERQR 249

Query: 170 RPTASVMIRAINPSVY 185
               +V++   + S  
Sbjct: 250 MRAEAVVVALGSYSPL 265


>gi|324997438|ref|ZP_08118550.1| hypothetical protein PseP1_01676 [Pseudonocardia sp. P1]
          Length = 112

 Score = 40.3 bits (92), Expect = 0.85,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 23/110 (20%)

Query: 16  SLGRTRILILASVILVPIMLFMAARFFV----------NSPHYDNLYVKL-------EVS 58
            +     L     ++V ++       +                D +   L          
Sbjct: 2   EMDVVPRLGTIVGLVVVLVAIGLLLRWTFGHQKNVTLPTDDPDDPVATGLLTEVSRVPGK 61

Query: 59  DVNRIS-VALSEANIDFRISDN-----GSSISVPSSMVGKARIHLAAQGL 102
           D  RI    L    I   I+       G ++ V    V  AR+ L+   L
Sbjct: 62  DAARILRDRLRAQGIRATITPGSDDRGGFALLVFPKDVPDARVVLSRGAL 111


>gi|167736644|ref|ZP_02409418.1| flagellar MS-ring protein [Burkholderia pseudomallei 14]
          Length = 88

 Score = 40.3 bits (92), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 3/90 (3%)

Query: 464 HNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYV 523
                               P       GL   D   L   +++  +       R     
Sbjct: 1   RRAFPPPAEPAAAAVPALDGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NR 57

Query: 524 SKQSDLRLLHMIEINEERFAKILRKWARSE 553
            +++      +   + +  A +++ W   E
Sbjct: 58  YERNLDYARTIARQDPKIVATVVKNWVSDE 87


>gi|262203602|ref|YP_003274810.1| amino acid adenylation domain-containing protein [Gordonia bronchialis
             DSM 43247]
 gi|262086949|gb|ACY22917.1| amino acid adenylation domain protein [Gordonia bronchialis DSM 43247]
          Length = 11233

 Score = 40.3 bits (92), Expect = 0.90,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 115   DKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTAS 174
             D +   G      ++   R   GEI   I ++ G+ AA   ++ PD     +        
Sbjct: 10544 DDIEYMGRADAQVQLRGFRIEYGEIEAAILTVDGVTAAAARVIRPDN----RDEQLI-GY 10598

Query: 175   VMIRAINPSVYKSAEAIRHLVAAAVP-NLDMGDVTVLD-----STGKLLTANEMERNILG 228
              +  A          AIR  VA AVP  +    + V++     + GKL  +      +  
Sbjct: 10599 ALADAGTDLD---VHAIRERVARAVPGYMVPDRIVVVERLPLTANGKLDRSALPVPELPD 10655

Query: 229   KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSI 288
                + V A   + E  I    A  LG +       +  ++    +             S 
Sbjct: 10656 TGEAGVVAADTDAERVIAAIFADVLGAEQVSV-TESFFDLGGNSLSATRVAARVSDALSA 10714

Query: 289   RLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLE 327
              +S     +  +    A TV+  +  ++     +PR   
Sbjct: 10715 EVSVRDLFTTPTVRGLAATVDSGVAGLAPVTAVVPRPDH 10753


>gi|313231658|emb|CBY08771.1| unnamed protein product [Oikopleura dioica]
          Length = 660

 Score = 40.3 bits (92), Expect = 0.92,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 93/384 (24%), Gaps = 36/384 (9%)

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTG 214
           H+   +    +    +      + +    +    +  + + AAA    +  +  +L    
Sbjct: 249 HLAGLNPALMQNQMEQNQMLNPLTSDPALLMAQIQKNQEMFAAAQAQENALNNPMLTPNS 308

Query: 215 KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
            LL      +        +   IQ +++ +++  + A         +             
Sbjct: 309 MLL------QLAASMQRQLQSRIQQQVQTSMSSPMPAT--------SPHLTTPFS----T 350

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
             +  P    E  +        S + Q    + V+  +                      
Sbjct: 351 AQIAPPSPVTEAVVEEVHSNAGSTSDQAPPQIVVKAELLGDEPSPASPAIVS-------- 402

Query: 335 QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
             N +IN              R + +       +       A   +          I + 
Sbjct: 403 TENNDINGNENVEIPPPALTPRSTTS----GQEVVVEPASPAMGEETGKLQIADQTIATE 458

Query: 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTF 454
           A+     R  +I++ S    ++      T         +             +G ++   
Sbjct: 459 ASEAVETR--SISVKSERLDDSACRPKSTHSAHSAHSNNSTNLRKRKLEDPGIGHMMSEQ 516

Query: 455 LGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRN 514
           L    L +           +         P + +      P    AL +        S +
Sbjct: 517 LLQQRLAQAARPSIPFPFGLSQFQARDRRPSNGSSDELSPPAARAALGA----QMHASMS 572

Query: 515 LQSRINSYVSKQSDLRLLHMIEIN 538
           LQ  +          +L  ++  N
Sbjct: 573 LQRSMQGGDFFNQLAQLQQLVGAN 596


>gi|330946649|gb|EGH47628.1| flagellar MS-ring protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 38

 Score = 39.9 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 3/37 (8%), Positives = 15/37 (40%)

Query: 518 RINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
              +         +  ++  +  R A+++++W  ++ 
Sbjct: 2   PSPTEGYDAQLNAIKSLVAEDPGRVAQVVKEWINTDE 38


>gi|167579439|ref|ZP_02372313.1| flagellar MS-ring protein [Burkholderia thailandensis TXDOH]
          Length = 85

 Score = 39.9 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/72 (11%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P  +    GL   D   L   +++  +       +      +++      +   + + 
Sbjct: 16  DGPDDALALDGLPSPDKKQLAEEDEEHPALLAFESEK---NRYERNLDYARTIARQDPKI 72

Query: 542 FAKILRKWARSE 553
            A +++ W   E
Sbjct: 73  VATVVKNWVSDE 84


>gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505]
 gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505]
          Length = 1142

 Score = 39.9 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93
           ++   A  +  S     L      + ++ I+  L  A + + I   G  + VP   V   
Sbjct: 431 VVAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEAAGLPYTIIGLGGMLYVPE--VADV 486

Query: 94  RIHLAAQGLPSSS 106
           R  L A   P   
Sbjct: 487 RALLTAASDPERG 499


>gi|239607393|gb|EEQ84380.1| nuclear export protein Noc3 [Ajellomyces dermatitidis ER-3]
          Length = 656

 Score = 39.9 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/86 (9%), Positives = 28/86 (32%)

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +  +    K  E   + +  P     +        D+       + +     ++ +++  
Sbjct: 29  KEKSRLPIKTAEGAIEHVAEPTVDDDSENPFDSDEDDAGEQPEPEVVEKPKPHIPAKVQI 88

Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547
             +K+   R+  +I  + E    + +
Sbjct: 89  LEAKEELARIAELINEDPEEHTGLFK 114


>gi|261200513|ref|XP_002626657.1| nuclear export protein Noc3 [Ajellomyces dermatitidis SLH14081]
 gi|239593729|gb|EEQ76310.1| nuclear export protein Noc3 [Ajellomyces dermatitidis SLH14081]
 gi|327352378|gb|EGE81235.1| nuclear export protein Noc3 [Ajellomyces dermatitidis ATCC 18188]
          Length = 697

 Score = 39.9 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/86 (9%), Positives = 28/86 (32%)

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +  +    K  E   + +  P     +        D+       + +     ++ +++  
Sbjct: 70  KEKSRLPIKTAEGAIEHVAEPTVDDDSENPFDSDEDDAGEQPEPEVVEKPKPHIPAKVQI 129

Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547
             +K+   R+  +I  + E    + +
Sbjct: 130 LEAKEELARIAELINEDPEEHTGLFK 155


>gi|158422365|ref|YP_001523657.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS
           571]
 gi|158329254|dbj|BAF86739.1| putative diguanylate cyclase (DGC) [Azorhizobium caulinodans ORS
           571]
          Length = 566

 Score = 39.9 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 3/169 (1%)

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTIT---ITSMDFLENQLFNSGTVQVSFMD 430
              D       +A ++   + A    S  GD +T   I+  +            Q    D
Sbjct: 235 ERGDTPFTKDRIARMSVTRTGAFVQKSPAGDLLTGYAISDGEQDFPGFGWIVVAQQPAED 294

Query: 431 ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVT 490
             +  +      + +    LLV         R       +      +    P        
Sbjct: 295 AFASAYHVAFRIIGYGAIALLVCVGLTLWFARRLGRPLRQLALAAEEIGRDPKITMLPRL 354

Query: 491 TGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            G     +++    +      S   +  + S   +Q    L  + + + 
Sbjct: 355 RGNADVMHLSYALRSLLRRLTSAETRYEMFSRKHEQDVAALKELADTDP 403


>gi|325120266|emb|CBZ55820.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1998

 Score = 39.9 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/329 (8%), Positives = 82/329 (24%), Gaps = 18/329 (5%)

Query: 215  KLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIR 274
            ++  A +    +  ++ +           N   A+   +G         A    + ++  
Sbjct: 1642 RIEAAWKQAHLMPTRNHTAENRYAPRWTNNKEPAVGGIVG---------ATATYNQREEA 1692

Query: 275  EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEE 334
                D          LS+         P +  +  ++       +V          ++EE
Sbjct: 1693 SQKTDVPEMNLADEPLSES--------PATQQSTAEDEQAQLSERVVSQEEATVVPQEEE 1744

Query: 335  QSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394
                      +    +    +     V   +  +      +    + ++ + E  + V  
Sbjct: 1745 TVVPGDEETVMPQEQETVVPQEQETVVPQEQETVVPGDEETVMPQEEETVVPEGEETVMP 1804

Query: 395  ATGINSRRGDTITITSMDFLEN-QLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVT 453
                 + R D  T+   +         +  V       + +   TV+             
Sbjct: 1805 QEEETAMRQDDETVVPQEEETAMPEDEATVVPQEEARAMPQDDETVVPQEEETAMPEDEA 1864

Query: 454  FLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSR 513
             +      R    ++A+        ++      +               +  Q+      
Sbjct: 1865 TVVPREEARAMPQEEARAMPQEEARVMPQEEARAMPQEEARAIPQEEARAMPQEEARAMP 1924

Query: 514  NLQSRINSYVSKQSDLRLLHMIEINEERF 542
              ++R       ++  +   ++  +EE  
Sbjct: 1925 QEEARAMPQEEARAMPQEETVVPEDEEAV 1953


>gi|167900848|ref|ZP_02488053.1| flagellar MS-ring protein [Burkholderia pseudomallei NCTC 13177]
          Length = 86

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P       GL   D   L   +++  +       R      +++      +   + + 
Sbjct: 17  DGPDDVLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYARTIARQDPKI 73

Query: 542 FAKILRKWARSE 553
            A +++ W   E
Sbjct: 74  VATVVKNWVSDE 85


>gi|298712619|emb|CBJ33314.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1256

 Score = 39.9 bits (91), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 58/206 (28%), Gaps = 3/206 (1%)

Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368
           E+NMP  +    P   +   T    +++  E        +           +    +   
Sbjct: 664 EENMPLGTAADSPKSPTGLGTAPTRDETAVEPKEAIGEESIPPGTAADSPKSPTGLRMTP 723

Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSF 428
            +  G+ + Q      L   + +V+ + G     GD I    ++  + Q     + +   
Sbjct: 724 AQDDGQPSAQATNSIPLDH-DDVVAGSGGALGNDGDDIDSMLLNISKEQQAFEASEEAKL 782

Query: 429 MDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSA 488
               +  +A  I      +   ++              +      +  K++      ++A
Sbjct: 783 RKNEAGFWAEWIALTGPSLARRVLAL--EAETLPRLKEEAVAITGIANKALFGTRGDATA 840

Query: 489 VTTGLMPNDNIALDSSNQDIFSHSRN 514
                   D      +++   S  + 
Sbjct: 841 EGVEEEVPDEEGGAQAHESSTSPKQG 866


>gi|167917105|ref|ZP_02504196.1| flagellar MS-ring protein [Burkholderia pseudomallei BCC215]
          Length = 83

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P       GL   D   L   +++  +       R      +++      +   + + 
Sbjct: 14  DGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYARTIARQDPKI 70

Query: 542 FAKILRKWARSE 553
            A +++ W   E
Sbjct: 71  VATVVKNWVSDE 82


>gi|167892352|ref|ZP_02479754.1| flagellar MS-ring protein [Burkholderia pseudomallei 7894]
          Length = 86

 Score = 39.9 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P       GL   D   L   +++  +       R      +++      +   + + 
Sbjct: 17  DGPDDMLALDGLPSPDKKQLAEEDEEHPALLAFENER---NRYERNLDYARTIARQDPKI 73

Query: 542 FAKILRKWARSE 553
            A +++ W   E
Sbjct: 74  VATVVKNWVSDE 85


>gi|167567366|ref|ZP_02360282.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 84

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
              + G S         + +   +P+    L +    +                +     
Sbjct: 1   APALAGGSTAGGRESEPSASDAALPDGRPRLANVMPFLDDVELPPAD----SGVEVLIDH 56

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  + +   ER A+++++W +S 
Sbjct: 57  LRTLSQKAPERVAEVVKQWIQSN 79


>gi|222476516|gb|ACM61988.1| phenylalanine ammonia-lyase [Lycoris radiata]
          Length = 708

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 22/163 (13%)

Query: 47  HYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            Y   YVKLE          L  A I   ++++GS++ V      +AR+  A+      S
Sbjct: 42  DYREAYVKLEG-------ATLKVAQIAA-VANDGSAVKVELDESARARVK-ASSDWVMDS 92

Query: 107 SNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
            N G + +     FG TS  +   +  AL+ E+ R + +            + + G    
Sbjct: 93  MNKGTDSYGVTTGFGATS-HRRTKQGGALQKELIRFLNA-----------GIFESGHNSS 140

Query: 167 IGARPTASVMIRAINPSVYKS-AEAIRHLVAAAVPNLDMGDVT 208
                + +     +  +        IR  +   +  L   ++T
Sbjct: 141 NTLPASTTRAAMLVRINTLLQGYSGIRFEILEVITRLLNNNIT 183


>gi|289808417|ref|ZP_06539046.1| putative pathogenicity island lipoprotein [Salmonella enterica
          subsp. enterica serovar Typhi str. AG3]
          Length = 53

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 33 IMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
          I+      FF+ +    +LY  L   + N++   L + +ID
Sbjct: 6  IIFLTVLTFFLTACD-VDLYRSLPEDEANQMLALLMQHHID 45


>gi|325090475|gb|EGC43785.1| nuclear export protein Noc3 [Ajellomyces capsulatus H88]
          Length = 685

 Score = 39.5 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 29/86 (33%)

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +  N    K  E   + +  P     +        D++      + +     ++ +++  
Sbjct: 58  KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEKPKPHVPAKVQI 117

Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547
             +K+   R+  +I  + E    + +
Sbjct: 118 LKAKEELARIAELINEDPEEHTGLFK 143


>gi|111021758|ref|YP_704730.1| adenylosuccinate lyase [Rhodococcus jostii RHA1]
 gi|110821288|gb|ABG96572.1| adenylosuccinate lyase [Rhodococcus jostii RHA1]
          Length = 473

 Score = 39.5 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 33/105 (31%)

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +   L FL  T ++  L    + R    +  K+  V     +        +   L  +D 
Sbjct: 362 LTRYLPFLATTKVLMALVRAGVGRETAHEVIKEHAVAVALAMREEGREPDLLDRLAADDR 421

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
           + LD +  D     +                ++  +++ + E  A
Sbjct: 422 LPLDRAALDEALADKKAFIGAAEAQVATVVAQVQKLVDADPEAAA 466


>gi|284032881|ref|YP_003382812.1| histidine kinase [Kribbella flavida DSM 17836]
 gi|283812174|gb|ADB34013.1| histidine kinase [Kribbella flavida DSM 17836]
          Length = 433

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 39/157 (24%), Gaps = 1/157 (0%)

Query: 391 IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
           +V+A  G        +   +  F     F          D        +     F +  L
Sbjct: 116 LVNAVLGFTLNLVSAVLFLASVFYLIYPFLVWVTPDGVFDRPFGGLFQLNPLTAFAMVPL 175

Query: 451 -LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
            LV FL   A        +A   +       S               + +   ++     
Sbjct: 176 GLVAFLIWSASGERLLRANATLAKSLLGPTESAKLAIRVRELAESRAETVDTQAAELRRI 235

Query: 510 SHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKIL 546
               +  ++        S      M+  + E+ A +L
Sbjct: 236 ERDLHDGAQARLAALSMSLGMAEEMVARDPEQAAALL 272


>gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 886

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93
           ++   A  +  S     L      + ++ I+  L EA + + I   G  + VP   V   
Sbjct: 430 VIAFLAERWSPSAEMAVL--CRTRAQMDPIAAELEEAGLPYTIVGLGGMLYVPE--VADV 485

Query: 94  RIHLAAQGLPSSS 106
           R  L     P   
Sbjct: 486 RALLTVASDPERG 498


>gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1146

 Score = 39.1 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 4/73 (5%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93
           +    A  +        L      + +  I+  L  A + + I   G  + VP   V   
Sbjct: 427 VAAFLAERWSPGAEMAVL--CRTRTQMEPIAAELEAAGLPYTIVGLGGMLYVPE--VADV 482

Query: 94  RIHLAAQGLPSSS 106
           R  L A   P   
Sbjct: 483 RALLTAASDPERG 495


>gi|134096875|ref|YP_001102536.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291006682|ref|ZP_06564655.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909498|emb|CAL99610.1| oligopeptide ABC transporter ATP-binding protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 330

 Score = 39.1 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 71  NIDFRISDNGSSISVPSSMVGKARIHLAAQGL--PSSSSNSGYELFDKVNSFGLTSFMQE 128
            I F +    +   V  S  GK+   LA  GL  P  +  SG   FD     GL+    +
Sbjct: 26  GISFDVEPGRTVGLVGESGCGKSVTSLAIMGLLPPRGAEVSGSITFDGTELLGLSRQELD 85

Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIV 157
             R R L       + S++ +V+  V + 
Sbjct: 86  KRRGRDLSMVFQDPLTSLNPVVSIGVQVA 114


>gi|242238499|ref|YP_002986680.1| short chain dehydrogenase [Dickeya dadantii Ech703]
 gi|242130556|gb|ACS84858.1| short-chain dehydrogenase/reductase SDR [Dickeya dadantii Ech703]
          Length = 258

 Score = 39.1 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 8/108 (7%)

Query: 21  RILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80
           +  +L +     I L  A   ++    Y  L       DV R+   L    ID  + ++ 
Sbjct: 2   QKAVLITGCSSGIGLIAA--QYLQQRGYRVLAACRRPEDVARM-NTLGFEGIDLDLDNSA 58

Query: 81  SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
           S           A I L    L    +N+GY L+  +++       Q+
Sbjct: 59  SV-----KQAAAAVIALTGNRLYGLFNNAGYGLYGPLSTITRRQLEQQ 101


>gi|226364288|ref|YP_002782070.1| adenylosuccinate lyase [Rhodococcus opacus B4]
 gi|226242777|dbj|BAH53125.1| adenylosuccinate lyase [Rhodococcus opacus B4]
          Length = 473

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 33/105 (31%)

Query: 439 VINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDN 498
           +   L FL  T ++  L    + R    +  K+  V     +        +   L  +D 
Sbjct: 362 LTRYLPFLATTKVLMALVRAGVGRETAHEVIKEHAVAVALAMREQGKEPDLLDRLAADDR 421

Query: 499 IALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFA 543
           + LD +  D     +                ++  +++ N E  A
Sbjct: 422 LPLDRAALDEALADKKAFIGAAEAQVATVVAQVQKLVDANPEAAA 466


>gi|261260688|gb|ACX55030.1| FliF [Bacillus amyloliquefaciens]
          Length = 78

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
            ++              +L  M +   E FAK+LR W   +
Sbjct: 38  PDINEEKIETEETVRRKQLEKMAKEKPEDFAKLLRSWLDED 78


>gi|315659528|ref|ZP_07912389.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
 gi|315495261|gb|EFU83595.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
          Length = 1632

 Score = 38.7 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 60/262 (22%), Gaps = 5/262 (1%)

Query: 157 VMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
              +  +          S        S  ++A +    V  A         T ++S    
Sbjct: 45  AQSNSSAKVSDKVATEQSASTSQEADSSQQTAASNAQNVQTAPEQDKATPTTEVNSNNNQ 104

Query: 217 LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
             +  +         +     + E      K     +  +   S    +         + 
Sbjct: 105 TDSKHVAPQKEQNQTATQTESKKETAQTQAKTEEKAVSDNKKASEDSDDKATSK--ETDE 162

Query: 277 VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
               DS    S   +     +      S           S  +   P +       +  +
Sbjct: 163 NKTDDSVDTNSNITTPVYDTTRARAATSVPLASSLDSDASAAENAEPPAEFIDKYNKSTN 222

Query: 337 NYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAAT 396
               +        ++Y    +   V        +   + A Q  + + +    +  S  T
Sbjct: 223 ---RSQLVHDLLAESYSETDVRAIVNRLNIDFNKTDAKKAFQAIMYAGIQYAKEQTSLYT 279

Query: 397 GINSRRGDTITITSMDFLENQL 418
              +  GD + + + +      
Sbjct: 280 TYATIPGDGVNVNNTEIGSVAE 301


>gi|323965442|gb|EGB60897.1| Ig domain-containing protein [Escherichia coli M863]
          Length = 1746

 Score = 38.7 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 51/398 (12%), Positives = 119/398 (29%), Gaps = 42/398 (10%)

Query: 61   NRISVALSEANIDFRISDNGSSISVPSSMVGK-----ARIHLAAQGLPSSSSNSGYELFD 115
            N IS    E  I   +  NGS+  V +  V        +  +AA    S+ ++ G  L  
Sbjct: 809  NMISQVAEENTISATL-PNGSTQRVTAKFVSDSNTPKLKQLVAAPDTISAGNSQGSTLTA 867

Query: 116  KVNSFGLTS-FMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFR-----KIGA 169
             V  F        ++  V   + ++  T  +      ARVH+     G++      +   
Sbjct: 868  TVTDFHNNPLKDMKVNFVAPTDSQLDNTTATTDQSGIARVHLTSSKAGNYTVDASLEADK 927

Query: 170  RPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL----DSTGKLLTANE-MER 224
                SV +  +          I +  + +    +   VT+     D  G  L   +    
Sbjct: 928  NIHQSVTVTVVPNREQSVI--ILNAGSGSTIANNTDTVTLTASVKDVYGHSLPDEDVKFT 985

Query: 225  NILGKSLSIVQAIQHEIEMNINKALAAFLG--VDNFRSAVVAELNMDTQQIR-----EIV 277
                 + +   +       +   A+    G     F        N  +         +  
Sbjct: 986  LPASMTGNFTLSSDTARTDSNGNAVVTLRGTKAGEFTVTATLSRNNTSANQLVYFIGDTS 1045

Query: 278  YDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSN 337
                  +  S+        + ++   + +   QN   + D++V    +       E  +N
Sbjct: 1046 SAQLQPLTASLNTIVAGNSTGSTLTATILDAYQN--PLKDQQVTFQSNDVTLSGTEVTTN 1103

Query: 338  YEINTKSIATTHDNYKLERL-------------SIAVVVNKGRLTEVLGRSADQGKIDSY 384
             +     I T++   +   +             S++V+ ++     +    A++  +   
Sbjct: 1104 TQGQATVIMTSNIAGQHNVVVSRKAQSSDNKTFSLSVLPDESSAKIISITGAEKTIMVGE 1163

Query: 385  LAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSG 422
               +   V  A       G  + ++++      + ++ 
Sbjct: 1164 NITLRIHVQDAFNNVIA-GQRVRLSALPTANITIDDTA 1200


>gi|301159183|emb|CBW18698.1| exodeoxyribonuclease VIII [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323130970|gb|ADX18400.1| gifsy-1 prophage RecE [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 1066

 Score = 38.7 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 93/365 (25%), Gaps = 13/365 (3%)

Query: 189 EAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKA 248
           + IR  +  A  N+   +   +D   +L  A       +              +      
Sbjct: 476 QKIRAELHEARKNIPPKNP--VDVGKQLAAARGEYVEGISDPNDPKWVKTETSQPASEPE 533

Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPE----S 304
           L   +G   F   V A +   +    E   +  S V+     S + Q  +  Q       
Sbjct: 534 LVKNVGNGIF--DVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEGDLG 591

Query: 305 AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTH-----DNYKLERLSI 359
                  + + +  +        +  + E Q N   + +           +  + E +  
Sbjct: 592 TGKEAVTVENQNQAETHQNNDSVSQSEPEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPN 651

Query: 360 AVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLF 419
            V      ++    + A    +      + K +          G+ + + ++     +  
Sbjct: 652 EVYHAANGISSTQVKDARVSLMYFNARHVEKTIVKERSPVLDMGNLVHVLALQPENLEAE 711

Query: 420 NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
            S   ++      +                 L++   + AL   +N     +  +G    
Sbjct: 712 FSVEPEIPEGAFTTTATLREFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVD 771

Query: 480 LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
            +               +     ++         N         S   D  L  +  IN 
Sbjct: 772 ETYASYEQLPEEFQRIENGTKHTATAMKACIKEYNATLPAPVKTSGSRDALLEQLAIINP 831

Query: 540 ERFAK 544
           +  A+
Sbjct: 832 DLVAQ 836


>gi|332095487|gb|EGJ00503.1| flagellar M-ring protein domain protein [Shigella dysenteriae
           155-74]
          Length = 70

 Score = 38.7 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 22/68 (32%)

Query: 488 AVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILR 547
           AV       + +      +         +       ++    R+  M + +    A ++R
Sbjct: 3   AVQQQAQAREEVEDAVEVRLSKDEQLQQRRANQRLGTEVMSQRIREMSDNDPRVVALVIR 62

Query: 548 KWARSEIE 555
           +W  ++ E
Sbjct: 63  QWINNDHE 70


>gi|218458071|ref|ZP_03498162.1| D-amino acid dehydrogenase small subunit [Rhizobium etli Kim 5]
          Length = 273

 Score = 38.7 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 11/136 (8%)

Query: 51  LYVKLEVSDVNRI-SVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNS 109
           L+   +  D +     AL+   I + + D    I V  ++    R  +   GL +    +
Sbjct: 140 LFRTQQQLDASAKDVKALAADGIPYEVLDRDGCIRVEPALRH-VRDKIVG-GLLTPKDET 197

Query: 110 GYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGA 169
           G + F   N+    +    +            TI+++  + A RV  V+      R+   
Sbjct: 198 G-DCFKFTNALAAKAEALGVRFAY------GTTIKALD-VEAGRVRGVVTARDPDRERER 249

Query: 170 RPTASVMIRAINPSVY 185
               +V++   + S  
Sbjct: 250 MSADAVVVALGSYSPL 265


>gi|167561147|ref|ZP_02354063.1| flagellar MS-ring protein [Burkholderia oklahomensis EO147]
          Length = 82

 Score = 38.4 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 482 PPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEER 541
             P  +    GL   D   L   + +  +       +      +++      +   + + 
Sbjct: 13  DGPNDAIALDGLPSPDKKQLADEDDEHPALLAFESEK---NRYERNLDYARTIARQDPKI 69

Query: 542 FAKILRKWARSE 553
            A +++ W   E
Sbjct: 70  VATVVKNWVSDE 81


>gi|325066922|ref|ZP_08125595.1| DNA/RNA helicase [Actinomyces oris K20]
          Length = 440

 Score = 38.4 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 34  MLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA 93
           +    A  +        L      + +  ++  L  A + + I   G  + VP   V   
Sbjct: 18  VAAFLAERWSPGAEMAVL--CRTRAQMEPVAAELEAAGLPYTIIGLGGMLYVPE--VADV 73

Query: 94  RIHLAAQGLPSSS 106
           R  L     P   
Sbjct: 74  RALLTTASDPERG 86


>gi|225555901|gb|EEH04191.1| nuclear export protein Noc3 [Ajellomyces capsulatus G186AR]
          Length = 685

 Score = 38.4 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 28/86 (32%)

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +  N    K  E   + +  P     +        D++      + +      + +++  
Sbjct: 58  KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEKPKPYVPAKVQI 117

Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547
             +K+   R+  +I  + E    + +
Sbjct: 118 LEAKEELARIAELINEDPEEHTGLFK 143


>gi|226311228|ref|YP_002771122.1| phenylalanyl-tRNA synthetase beta chain [Brevibacillus brevis NBRC
           100599]
 gi|226094176|dbj|BAH42618.1| phenylalanyl-tRNA synthetase beta chain [Brevibacillus brevis NBRC
           100599]
          Length = 807

 Score = 38.4 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 26/237 (10%)

Query: 5   DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRIS 64
           ++     +  +    ++ +  A V      +       +N      L   +  SDV+ I 
Sbjct: 381 ERAAALIQQLSGATVSKGISSAVVSEAAPAVVSVTLAKINQH----LGTDMSASDVSPIF 436

Query: 65  VALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTS 124
             L      + ++ +  +++VP+       I L    +   +   GY+        G T+
Sbjct: 437 ERLQ---FPYEVAGDKWTVTVPTRRGD---ITLPEDLVEEVARLYGYDNIPTSLPSGSTT 490

Query: 125 FMQEITRVRALEGEIARTIQSI-------SGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
             Q        E ++ RTI+           I  A VH    +  +          ++M+
Sbjct: 491 QGQ-----LTKEQQLRRTIRHHLIGTGMNEAISYALVHPDRVEAVAGLHQEKVNPVALMM 545

Query: 178 RAI---NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSL 231
                 +        ++   VA      +  DV + +     LT  E    +  + L
Sbjct: 546 PMSEDHSVLRTSLIPSLLETVAYNKNRQN-HDVAIFELGRVFLTKEETLTQLPEERL 601


>gi|317500710|ref|ZP_07958928.1| beta-galactosidase BbgIII [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897904|gb|EFV19957.1| beta-galactosidase BbgIII [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1936

 Score = 38.4 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 47/187 (25%), Gaps = 15/187 (8%)

Query: 200  PNLDMGDVTVLDSTGKLLTANEM---------------ERNILGKSLSIVQAIQHEIEMN 244
             +L    V+V D  G L+   +                +        S     +      
Sbjct: 826  EDLSYLTVSVTDDKGNLVPNADNKVTFEVSGDGVLAGVDNGRPVDHQSYRDDNRKAFSGQ 885

Query: 245  INKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPES 304
            +   + +          V A+   +           D   E     S    ++   +  +
Sbjct: 886  LVGIVQSTKSAGTITVKVKADGLEEQTVQITTEASSDGTTEAKAISSVKMSKNYYVKVGN 945

Query: 305  AVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVN 364
               +   +  V + K     ++   D  E+Q N         T       +  +++V VN
Sbjct: 946  RPQLPAELDAVLNDKSEAKGNVTWEDVAEDQINQSGTFSVTGTVTVAGVDKAETVSVNVN 1005

Query: 365  KGRLTEV 371
                   
Sbjct: 1006 MIDTVAA 1012


>gi|313650160|gb|EFS14573.1| flagellar M-ring domain protein [Shigella flexneri 2a str. 2457T]
 gi|332756094|gb|EGJ86447.1| flagellar M-ring protein domain protein [Shigella flexneri 4343-70]
 gi|332757323|gb|EGJ87660.1| flagellar M-ring protein domain protein [Shigella flexneri 2747-71]
 gi|332757504|gb|EGJ87839.1| flagellar M-ring protein domain protein [Shigella flexneri K-671]
 gi|332766676|gb|EGJ96880.1| flagellar M-ring FliF basal-body MS(membrane and
           supramembrane)-ring and collar domain protein [Shigella
           flexneri 2930-71]
 gi|333003262|gb|EGK22808.1| flagellar M-ring protein domain protein [Shigella flexneri K-218]
 gi|333017640|gb|EGK36952.1| flagellar M-ring protein domain protein [Shigella flexneri K-304]
          Length = 53

 Score = 38.4 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 6/31 (19%), Positives = 15/31 (48%)

Query: 525 KQSDLRLLHMIEINEERFAKILRKWARSEIE 555
           +    R+  M + +    A ++R+W  ++ E
Sbjct: 23  EVMSQRIREMSDNDPRVVALVIRQWINNDHE 53


>gi|154276208|ref|XP_001538949.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414022|gb|EDN09387.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 646

 Score = 38.4 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 29/86 (33%)

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +  N    K  E   + +  P     +        D++      + +     ++ +++  
Sbjct: 29  KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEQSKPHVPAKVQI 88

Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547
             +K+   R+  +I  + E    + +
Sbjct: 89  LEAKEELARIAELINEDPEEHTGLFK 114


>gi|82940561|emb|CAJ44290.1| putative flagellar M-ring protein FliF [Rhizobium leguminosarum bv.
           viciae]
          Length = 78

 Score = 38.4 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%)

Query: 478 SILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEI 537
            +    P S A    LM          + +      +     N  V +  + +L  M+EI
Sbjct: 1   ELPDFAPASGAAGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSRMVEI 60

Query: 538 NEERFAKILRKWARSEIE 555
           NEER AKILRKWA  +  
Sbjct: 61  NEERAAKILRKWAIDDAA 78


>gi|110681345|ref|YP_684352.1| hypothetical protein RD1_4230 [Roseobacter denitrificans OCh 114]
 gi|109457461|gb|ABG33666.1| hypothetical protein RD1_4230 [Roseobacter denitrificans OCh 114]
          Length = 1025

 Score = 38.4 bits (87), Expect = 3.6,   Method: Composition-based stats.
 Identities = 55/440 (12%), Positives = 121/440 (27%), Gaps = 27/440 (6%)

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV----- 175
                 +  T  R L GE+A T+     ++  R            +    P A       
Sbjct: 202 SSADAKEAQTLDRRLTGELAHTVSRALTLLETRTEHAATQDAPSGQQSGHPQAGQPDQVP 261

Query: 176 MIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQ 235
           +  A N +   S   I   + AA+   D   + + ++   L+            +     
Sbjct: 262 VTEASNAAATTSPPDIARDLHAALNGSDAFSLRLTNARKHLIHGLLQAGVPGAVARERSF 321

Query: 236 AIQHEIEMNINKALAAFLGVDNFRSA-VVAELNMDTQQIREIVYDPDSKVERSIRLSKDA 294
           A+ H         L  FL + +  ++ V  E      ++      P+  V  S       
Sbjct: 322 ALLHR--------LLPFLDIGSGAASLVSPEQPQTAAEVARSQASPEKSVNSSTVSPTTP 373

Query: 295 QRS--ETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNY 352
             +  +      A    +       +      S     + E        + S   T +  
Sbjct: 374 SGNLPQAKGAHGAPEATKAHQIEPRQNSQPDASEVRPPEPERDRAVSNPSPSQHETAEPA 433

Query: 353 KLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMD 412
                + A+++ +  + + LG    +   D  +A++ +  +A     S  G  + +    
Sbjct: 434 AASDEADALMLTE--IAQALGIRPGETAKDVCIAQLMQSPTAVFDAASDLG-ALNVLVRL 490

Query: 413 FLENQLFN------SGTVQVSFMDILSRHFATVINALVFLVGTLLVTFL--GLHALRRLH 464
             + Q         +     S   + +   AT   A+  L            L     L 
Sbjct: 491 LAQAQSDAGPLLAKAPLEADSIAALFASDPATFAKAVAQLTTADAFALARRLLPPGATLL 550

Query: 465 NIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVS 524
               ++  +      L+      A+  G + +               S   ++   +   
Sbjct: 551 IAHLSRLRDSAKSPRLAMQQAVLALLNGDLLDFEDLAQRVETPAEKMSPAERTGGETTAE 610

Query: 525 KQSDLRLLHMIEINEERFAK 544
           +       +  + + E  A+
Sbjct: 611 EDGATERENPSDPDPEAAAQ 630


>gi|239917771|ref|YP_002957329.1| predicted periplasmic solute-binding protein [Micrococcus luteus
           NCTC 2665]
 gi|281413735|ref|ZP_06245477.1| predicted periplasmic solute-binding protein [Micrococcus luteus
           NCTC 2665]
 gi|239838978|gb|ACS30775.1| predicted periplasmic solute-binding protein [Micrococcus luteus
           NCTC 2665]
          Length = 422

 Score = 38.0 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 92/367 (25%), Gaps = 53/367 (14%)

Query: 15  TSLGRTRILILASVILVPIMLFMAARF--FVNSPHYDNL------YVKLEVSDVNRISVA 66
              GR R  ++   +LV   + +      F++ P +  +      +      D+  ++  
Sbjct: 77  RGAGRRRTALVLGTVLVAFAVVVGLIVRGFLSGPDHTAVEGDEVTFSVEPGEDLGSVAAR 136

Query: 67  LSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFM 126
           L  A I            V S+   +        GL  S      E      +  +    
Sbjct: 137 LDRAGI------------VGSARAFERAARDTGSGLVRSGDFVLRERMPAAEALAVLQGA 184

Query: 127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYK 186
            +      L     R  + +  +  A             +      A    R   P    
Sbjct: 185 TDGAVHYVLVERGRRLTEVLDAVAEA---------TGLPREELEAAAQDPTRYGVPGEAG 235

Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNIN 246
           + E    L A          + V  + G++L A         ++L++    + +  + I 
Sbjct: 236 TLEG--WLDAGEY------RLPVDATAGQVLDALIRPTLTELEALNVRDPAEQQRVLTIA 287

Query: 247 KALAAFLGVDNFRSAVVAELNM---DTQQI------REIVYDPDSKVERSIRLSKDAQRS 297
             L A     +++    A +N    D  +          V         S    +    S
Sbjct: 288 SILEAEALPQDYQQVAGAIVNRLAPDNTETHGLLQIDATVTYGLGVRSLSFTSGQRQDAS 347

Query: 298 E-------TSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350
                      P   + +  +    +        +           + E +         
Sbjct: 348 NPYNTYVHPGLPPGPIGMPSDAAVEAALDPAETDAYYWVTTDIGTGHTEFSRTYEEHQQH 407

Query: 351 NYKLERL 357
              L+R 
Sbjct: 408 VRTLQRY 414


>gi|330953275|gb|EGH53535.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 128

 Score = 38.0 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 155 HIVMPDMGSFRKIGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDST 213
           H+V+PD    +++ +  +ASV++R    +        I+ LVA  +  L    V+V    
Sbjct: 2   HVVLPDNDLLKRVISPSSASVLVRYDPRTDINVLIPQIKTLVANGISGLGYDGVSVTAIK 61

Query: 214 GKLLTANEMERNILG 228
             L      +  +  
Sbjct: 62  AALPDKAGAQPQLAS 76


>gi|185132651|ref|NP_001117146.1| hepatocyte nuclear factor 1-alpha [Salmo salar]
 gi|6647562|sp|Q91474|HNF1A_SALSA RecName: Full=Hepatocyte nuclear factor 1-alpha; Short=HNF-1-alpha;
           Short=HNF-1A; AltName: Full=Transcription factor 1;
           Short=TCF-1; AltName: Full=sHNF1
 gi|683715|emb|CAA55985.1| HNF1 [Salmo salar]
          Length = 559

 Score = 38.0 bits (86), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +  L     +++  V     L    ++     G    D  + +    D           
Sbjct: 24  LIWALLGSGLSREVLVHALGELERERVTPGAEKGD-RGDGESSEEGEMDFPPPIFQELEA 82

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +    + +    +  +++ +  R AK+++ + + 
Sbjct: 83  LAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQ 116


>gi|297804512|ref|XP_002870140.1| hypothetical protein ARALYDRAFT_493210 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315976|gb|EFH46399.1| hypothetical protein ARALYDRAFT_493210 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 884

 Score = 38.0 bits (86), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 69/250 (27%), Gaps = 15/250 (6%)

Query: 324 RSLENTDKKEEQSNYEINTKSIATTHDN-----YKLERLSIAVVVNKGRLTEVLGRSADQ 378
                 +K+++Q++ E +T S  T  +         ++L         ++          
Sbjct: 574 DENSQENKEDQQTDAENSTASNTTAEEPAVVDLGTEKKLKKRTFRIPLKVVVEKTVGPGA 633

Query: 379 GKIDSYLAEINKIVSAATGINSRRGDTITITSM--DFLENQLFNSGTVQVSFMDILSRHF 436
                 LAE    + A    +  R  T  + +    ++        T +   +       
Sbjct: 634 PFTKESLAEAKIKLEALDKKDRERRRTAELKNNLESYIYATKEKLETPEFEKVSTQEERK 693

Query: 437 ATVINALVFLVGTLLVTFLGLHALRR---LHNIDDAKKGEVGGKSILSPPPISSAVTTGL 493
           A V       +  LL     L  + +     + +DA   E   +        S       
Sbjct: 694 AFVEKLDEACINFLLNYIYYLVPMVQDWLYMDGEDANATEFEERLDSLKAIGSPISFRSE 753

Query: 494 MPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
                       +   +  + +     +  +     ++  + +      A+ ++ W    
Sbjct: 754 ELTARPVAIEYARKYLTELKEIIKEWETNKTWLPKEKIDEVSKE-----AEKVKSWLDKN 808

Query: 554 IEDRYTQHIS 563
           + ++    +S
Sbjct: 809 VAEQEKTSLS 818


>gi|320324657|gb|EFW80731.1| general secretion pathway protein GspH [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328767|gb|EFW84766.1| general secretion pathway protein GspH [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 153

 Score = 38.0 bits (86), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 37/107 (34%), Gaps = 15/107 (14%)

Query: 16  SLGRTRILILA--SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANID 73
           S+   R   L    V+LV I +  A       P    L       D  R++  L  A I+
Sbjct: 2   SMDTQRGFTLIELMVVLVIIGIVSATVSMSIKPDPAALL----RKDAERLAHMLHTAQIE 57

Query: 74  FRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            R+     ++ V     G AR   A QGL       GY+ F      
Sbjct: 58  ARVDGRPITLLVDDKGFGFARR--AEQGL-------GYDRFMNDPQL 95


>gi|299531177|ref|ZP_07044589.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
 gi|298720880|gb|EFI61825.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
          Length = 1037

 Score = 38.0 bits (86), Expect = 4.4,   Method: Composition-based stats.
 Identities = 71/562 (12%), Positives = 147/562 (26%), Gaps = 68/562 (12%)

Query: 19   RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
              R + + +V +  +++   +  ++          +L+  D   +            IS 
Sbjct: 524  AKRRMAVIAVFVSVLVVAGVSAKWLG----TEFLPELDEGDAYVLVQM------PASISL 573

Query: 79   NGSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
                      ++   R+ L            QG P S +++  E  +            +
Sbjct: 574  EKG-----QEVLRDVRLRLKVFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKPHGD 626

Query: 129  ITR---VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
              +     AL  E+  T+  I G+     +   P   S  +  +     V+++   P   
Sbjct: 627  WRKGLTKPALIEEMRATLGEIPGVAF---NFAQPIRDSVEESTSGARGQVVLKLFGP-DI 682

Query: 186  KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
             +   I     + V  +D     V+D     L  +     +  +      A Q     + 
Sbjct: 683  PTLRGILQQTKSLVKGID----GVVDLD---LYRDAPAPQVHVQFDRQALARQGIAMEDA 735

Query: 246  NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
             K L   L   N   A           +R  +   D   E  IR          S P  +
Sbjct: 736  QKTLEVAL-AGN--VATTLWEGEFPVPVRVRLPYVDRMDEERIRNIAIPLPDGGSVPLGS 792

Query: 306  VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
            V         S                 E           +   D     + ++ +    
Sbjct: 793  VGTVSMKIGNSSIFREGNARYMALKFNVE------GRDIGSVVKDTLATFKQNVKLPEGY 846

Query: 366  GRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINS---RRGDTITITSMDFLENQLF 419
              +    G   +Q +  + L  +  +   +  A    +    R   I +    F      
Sbjct: 847  QAVWG--GEWENQQRAAARLKVVVPLSLVIVYALLFGALGQARSAGIILLCAPFAMVG-- 902

Query: 420  NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                + ++ +++        I  L  +    L+    +  LRR          E   + +
Sbjct: 903  GIAALHLAHIELSISAAIGFIALLGQVALAGLLVVSAVEDLRRQGMPLMQALIEGAAERM 962

Query: 480  LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             S   ++     GL+P        S       S  +   +   +     L  +    +  
Sbjct: 963  RSIILVALLALLGLLPMALSTGVGSETQRPFASVIVGGMVVLPLVALVLLP-VLYALLGP 1021

Query: 540  ERFAKILRKWARSEIEDRYTQH 561
                   +     E  D   Q 
Sbjct: 1022 -------KSMLTQEERDESAQD 1036


>gi|223649048|gb|ACN11282.1| Hepatocyte nuclear factor 1-alpha [Salmo salar]
          Length = 558

 Score = 38.0 bits (86), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/94 (9%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSR 518
            +  L     +++  V     L    ++     G    D  + +    D           
Sbjct: 24  LIWALLGSGLSREVLVHALGELERERVTPGAEKGD-RGDGESSEEGEMDFPPPIFQELEA 82

Query: 519 INSYVSKQSDLRLLHMIEINEERFAKILRKWARS 552
           +    + +    +  +++ +  R AK+++ + + 
Sbjct: 83  LAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQ 116


>gi|156839187|ref|XP_001643287.1| hypothetical protein Kpol_1027p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113891|gb|EDO15429.1| hypothetical protein Kpol_1027p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1036

 Score = 38.0 bits (86), Expect = 4.6,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 96/333 (28%), Gaps = 44/333 (13%)

Query: 107 SNSGYELFDKVNS--------FGLTSFMQEITRVRALEGEIARTIQSIS---------GI 149
            N  +E+  ++ +        F ++ F  ++T +RA    +  +++  +          +
Sbjct: 496 GNELFEILFQLTNQIDKVVELFKISQFRDQLTLLRASLSHLISSVRYYAVYGEILPKITV 555

Query: 150 VAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTV 209
            AA   ++             P  +  +           E+I +    ++ +    ++++
Sbjct: 556 QAAAAELIFALCKLISVGKITPNDNFDLTLNATLNNTEDESIPNSPVRSIASSSRPNISI 615

Query: 210 LDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELN-M 268
                  L  +  E     K L I Q     +E           G   F S +       
Sbjct: 616 SIENSSFLEDDGQEEISPVKPLKITQKANRILE---KSTFRKPSGTSMFSSILETRPTSK 672

Query: 269 DTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328
             ++I     D      +S++ S  A +S         T+ Q   +    K         
Sbjct: 673 SNEEISSKKIDRQDNNSKSVKSSIRAIQS--------PTITQEGYNNDPEKNKGIGLGIV 724

Query: 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388
           +    E   ++ +T S   + ++  ++  S +                      + + +I
Sbjct: 725 SS---ESPAFKADTSSENHSSNSPTIKDESTS------------MEPKVNTVDFATVRKI 769

Query: 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNS 421
                     +  R D++ +   D         
Sbjct: 770 ESPHLNTNMKSIDRDDSVKVNGPDISVTSPDTE 802


>gi|46205379|ref|ZP_00048615.2| COG1766: Flagellar biosynthesis/type III secretory pathway
           lipoprotein [Magnetospirillum magnetotacticum MS-1]
          Length = 101

 Score = 38.0 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%)

Query: 466 IDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSK 525
              A +G     +       ++    G +         + +        L   +   +++
Sbjct: 11  ALAAPEGAPALAAGALSADAAALAAPGAVAAGAALPGEAPKLPAPGVAGLLEELEDKMAR 70

Query: 526 QSDLRLLHMIEINEERFAKILRKWARSEI 554
               RL  +I+INEE+ A +L++W   E 
Sbjct: 71  SPQKRLEQLIDINEEQVAAVLKRWLMREE 99


>gi|328957266|ref|YP_004374652.1| hypothetical protein CAR_c09430 [Carnobacterium sp. 17-4]
 gi|328673590|gb|AEB29636.1| conserved hypothetical protein [Carnobacterium sp. 17-4]
          Length = 250

 Score = 38.0 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 13/91 (14%)

Query: 24  ILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR-----------ISVALSEANI 72
           IL    +  I++ + + FFV S  Y  L   L  ++              I   L+E   
Sbjct: 7   ILIGCFIFFILVLLGSLFFVQSKTYQPLSEALNETESTNQYTVEESQDAIIFKPLNEQQS 66

Query: 73  DFRISDNGSSISVPSSMVGKARIHLAAQGLP 103
              +   G    V           LAA+G P
Sbjct: 67  TSVLFYQGG--LVEEKSYSSIAAKLAAKGYP 95


>gi|229515171|ref|ZP_04404631.1| hypothetical protein VCB_002828 [Vibrio cholerae TMA 21]
 gi|229347876|gb|EEO12835.1| hypothetical protein VCB_002828 [Vibrio cholerae TMA 21]
          Length = 157

 Score = 37.6 bits (85), Expect = 5.0,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 14/151 (9%)

Query: 60  VNRISVALSEANIDFRIS--DNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKV 117
            N++ V L++  ++ +++   +G  + V  +   KAR  LA             +L    
Sbjct: 13  SNKVIVLLNKNQVNAKLTQLKDGYGVLVDDAQEMKARELLAYYNF-YFEREDLNDLL--E 69

Query: 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI 177
           + F   S ++ +        EI   +  +  I+   V +                 SV+I
Sbjct: 70  SKFASLSKLEMVKSNFLQSREIYNKLSIMPNILRVSVVVT---------GEKAKRISVLI 120

Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVT 208
            +++    ++   I   +   +   D   ++
Sbjct: 121 LSLSEISAENKSNIERFLKGVLNEEDKLTIS 151


>gi|194745592|ref|XP_001955271.1| GF16318 [Drosophila ananassae]
 gi|190628308|gb|EDV43832.1| GF16318 [Drosophila ananassae]
          Length = 2634

 Score = 37.6 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 71/272 (26%), Gaps = 5/272 (1%)

Query: 272  QIREIVYDPDSKVERSIRLSKDAQRSE-TSQPESAVTVEQNMPHVSDRKVPLPRSLENTD 330
            ++      P    +     +++A ++  T  P+ A     ++      K P+  + +  +
Sbjct: 2031 EVMSQTVAPHGATDDEAASTEEADQTPVTVAPQDAEKTPISVAPQDADKTPVTVAPQEDE 2090

Query: 331  KKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINK 390
            K    +  + + K  AT       +++    V  +           D  KI + +A I  
Sbjct: 2091 KTPATAVPKEDEKIPATETPE-DADKIPATSVPQEDEKIPATETPEDADKIPATIAPIVP 2149

Query: 391  IVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTL 450
             V  ++   S   D   +              T   S      +   +     V     +
Sbjct: 2150 SVEPSSEKPSISED---VGEEGTESPIDDAEDTTDESAAGAKLKPPTSAPATDVPAESAV 2206

Query: 451  LVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFS 510
                +           D  +K     + +   P  +S           +A +   +    
Sbjct: 2207 TEAEIVAETAAPELEKDLPEKTSEEPEKVSEEPEKASEEPEKASEKPEMATEQPEKAGEE 2266

Query: 511  HSRNLQSRINSYVSKQSDLRLLHMIEINEERF 542
              +       +    +             E+ 
Sbjct: 2267 PEKATDEPEKATDEPEKASEEPEKATEEPEKV 2298


>gi|223997492|ref|XP_002288419.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975527|gb|EED93855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1411

 Score = 37.6 bits (85), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 53/202 (26%), Gaps = 17/202 (8%)

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           +   + +I +I  +   R            +    P       A       +  AIR  +
Sbjct: 464 QKSYSISINAIQMLGTKRPIFFKESSTCLARRTMDPPGESSGEAEGLLPKAAITAIRTHL 523

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
            ++   +    ++V   + ++L     E  +  +                   L    G 
Sbjct: 524 RSSCLTMLRHFISVTSGSHEILVNALTEVGMGSQ--------AERALQASKNQLNLMKGG 575

Query: 256 DNFRSAVVAELNMDTQ--QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVT------ 307
              R+        D      R      D+    +   S    R   S  +   +      
Sbjct: 576 RAARNRAAVFYEWDQSADASRAEKRQRDTDDAEARVRSAKIARGLGSGVQLPTSMADACE 635

Query: 308 -VEQNMPHVSDRKVPLPRSLEN 328
            V  N+ ++  ++ P+  +   
Sbjct: 636 LVLLNLKNLPPKRPPVASTTHR 657


>gi|167835056|ref|ZP_02461939.1| flagellar MS-ring protein [Burkholderia thailandensis MSMB43]
          Length = 64

 Score = 37.6 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 5/48 (10%), Positives = 16/48 (33%)

Query: 506 QDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSE 553
           ++   H   L         +++      +   + +  A +++ W   E
Sbjct: 16  EEDEEHPALLAFESEKNRYERNLDYARTIARQDPKIVATVVKNWVSDE 63


>gi|170107917|ref|XP_001885168.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640009|gb|EDR04277.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 806

 Score = 37.6 bits (85), Expect = 6.2,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 80/308 (25%), Gaps = 38/308 (12%)

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNL 202
           I  +  +  A  H+    + +      +P+ +V+ +           A +          
Sbjct: 264 IVFLDNMTVAAAHVSGSLVVASWDPNLKPSINVLRKNDGTLGLSQVLAYK---------- 313

Query: 203 DMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAV 262
                 ++D    +L  N  E         I+ A          +        +    A 
Sbjct: 314 ------LIDERPTILFGNGEEA-----QTDIMIATFKLPAYTAER-------ENEVVMAA 355

Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322
               N  T +I +      +  E     S   +       + A   E N P ++      
Sbjct: 356 HVAHNQPTIEILQRGQQHTANPELLRDES-HVEWMAEPMAKPAGLEEGNQPQIA--IYDQ 412

Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYK-------LERLSIAVVVNKGRLTEVLGRS 375
           P +   T       N  + +   +T +               + + +     + +    +
Sbjct: 413 PPTSIVTSSTATTDNEVLTSAVSSTVNPPPTSAVSRTIPIASTASQLPVTATVGKPPMSA 472

Query: 376 ADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRH 435
                     A +  IV A T    +     TI +          +  V     D  ++ 
Sbjct: 473 VTGTINQPPAATVTDIVPAVTSTTYQPSAATTIITAVDQPPTTAITSAVSQPLTDTAAQP 532

Query: 436 FATVINAL 443
           + TV   L
Sbjct: 533 YMTVDQPL 540


>gi|6724256|gb|AAF26922.1|AF210843_19 polyketide synthase [Sorangium cellulosum]
          Length = 3798

 Score = 37.6 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 14/182 (7%)

Query: 381  IDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVI 440
                  EI  +V+     ++   D +   S      +L  +          LS   + ++
Sbjct: 1092 PQKSPTEIEPLVAELLSPDAE--DQLAFRSGRRHAARLVAAPPEGDVAPISLSAEGSYLV 1149

Query: 441  NALVFLVGTLLVTFLGLHA---LRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPND 497
               +  +G L+  +L       L         ++   GG+         +AV        
Sbjct: 1150 TGGLGGLGLLVARWLVERGARHLVLTSRHGLPERQASGGEQPPEARARIAAVEGLEAQGA 1209

Query: 498  NIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR----LLHMIEINEERFAKILR-----K 548
             + + + +         L + I   +           + H+ E +E     +LR      
Sbjct: 1210 RVTVAAVDVAEADPMTALLAAIEPPLRGVVHAAGVFPVRHLAETDEALLESVLRPKVAGS 1269

Query: 549  WA 550
            W 
Sbjct: 1270 WL 1271


>gi|254393210|ref|ZP_05008365.1| ABC transporter substrate-binding protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|294811618|ref|ZP_06770261.1| ABC transporter substrate-binding protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440195|ref|ZP_08214929.1| ABC transporter substrate-binding protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|197706852|gb|EDY52664.1| ABC transporter substrate-binding protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324217|gb|EFG05860.1| ABC transporter substrate-binding protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 269

 Score = 37.2 bits (84), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 18/131 (13%)

Query: 78  DNGSSISVPSSMVGKARI--HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
            +G++++VP+    +AR    L   GL      +G E              +    ++  
Sbjct: 127 KDGATVAVPNDTTNEARALRLLEQNGLIKLKPGTGAEA-------TPKDIAENPKNLKIK 179

Query: 136 EGEIARTIQSISGIVAARVH--------IVMPDMGSFRKI-GARPTASVMIRAINPSVYK 186
           E E A+T + +  + AA ++        +         +     P  + +         +
Sbjct: 180 EVEAAQTPRVLGEVDAAVINGNYAVEAKLSPKKDSIALESAENNPYGNFLAVKKGDENDE 239

Query: 187 SAEAIRHLVAA 197
             + +  L+++
Sbjct: 240 QVKKLAKLLSS 250


>gi|315633769|ref|ZP_07889059.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter
            segnis ATCC 33393]
 gi|315477811|gb|EFU68553.1| S6 family IgA-specific metalloendopeptidase/adhesin [Aggregatibacter
            segnis ATCC 33393]
          Length = 1520

 Score = 37.2 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 24/185 (12%)

Query: 395  ATGINSRRGDTITIT---SMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGT-- 449
            A+ + ++RGD +T+T   S +F+ +   + G  +   +D+L    A    AL   +    
Sbjct: 855  ASALTNQRGDKVTVTHQASGNFVLDVKDSGGEAKYEKLDLLDASKAIRDPALKVSLARNH 914

Query: 450  LLVTFLGLHAL----------RRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNI 499
            + +       +           +L N     +     K        +       +  + I
Sbjct: 915  VDLGAYVYSLIEQDGIFRLYNAKLENEKIEAERIAKEKEAARLAEEARQRELARLEAERI 974

Query: 500  ALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDR-Y 558
            A +   Q      R  + + ++ +++++      +  +  ER AK        E + R  
Sbjct: 975  AKEKEEQARLEAERIAKEKEDARLAEEARQ--RELARLEAERIAK------EKEEQARLE 1026

Query: 559  TQHIS 563
             + I+
Sbjct: 1027 AERIA 1031


>gi|237753397|ref|ZP_04583877.1| septum formation protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229375664|gb|EEO25755.1| septum formation protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 792

 Score = 37.2 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 24/291 (8%), Positives = 59/291 (20%), Gaps = 8/291 (2%)

Query: 275 EIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENT--DKK 332
           E+   P  K E + + S   + S     +S           S      P    +   D  
Sbjct: 38  ELEQTPPPKQEFAQQESLQKESSRKQAIKSYPKNLYAATPFSAYYDKEPVGTHDRLVDAS 97

Query: 333 EEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIV 392
             Q  Y     ++  T   Y  +  +  +  N   +        +    +     +    
Sbjct: 98  NFQKEYPDKKNTLPKTIFYYGDKVSTHPLSENSENMESKNAEVKNTEITNQTAQTLENTK 157

Query: 393 SAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLV 452
           S             TI +              Q   +   S    T+             
Sbjct: 158 SENIIPQQEIP-QATIQTPQIQATPQIQEIVPQPEIIPQYSTIPNTIPTFGYGYAHYQEP 216

Query: 453 TFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHS 512
                  +     ++         +      P  +                         
Sbjct: 217 IQQITQPIVIEQTMESKILTTAPQQVAKPQEPQVTESIQAQQAPIQTPKQEMPPAQIPQL 276

Query: 513 RNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEIEDRYTQHIS 563
           + +  +           ++        ++  +I++           T  ++
Sbjct: 277 QEIAPQPVIQTQSVQTPQVR----QEPQQSVEIVKT-LEENAALLETLEMA 322


>gi|330881989|gb|EGH16138.1| general secretion pathway protein GspH [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 151

 Score = 37.2 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 17  LGRTRILILA--SVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDF 74
           +   R   L    V+LV I +  A       P    L       D  R++  L  A I+ 
Sbjct: 1   MDTQRGFTLIELMVVLVIIGIVSATVSMSIKPDPAALL----RKDAERLAHMLHTAQIEA 56

Query: 75  RISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
           R+     ++ V     G AR   A QGL       GY+ F      
Sbjct: 57  RVDGRPITLLVDDKGFGFARR--AEQGL-------GYDRFMNDPQL 93


>gi|126433294|ref|YP_001068985.1| glutamate-1-semialdehyde aminotransferase [Mycobacterium sp. JLS]
 gi|257096483|sp|A3PUB7|GSA_MYCSJ RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; Short=GSA;
           AltName: Full=Glutamate-1-semialdehyde aminotransferase;
           Short=GSA-AT
 gi|126233094|gb|ABN96494.1| glutamate-1-semialdehyde 2,1-aminomutase [Mycobacterium sp. JLS]
          Length = 438

 Score = 37.2 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  +    LG        S   V +   +A     +   Y  L    +      ++ AL+
Sbjct: 288 EVMERLAPLGPVYQAGTLSGNPVAMAAGLATLRTADDAVYAALDKNADRL-AGLLTDALT 346

Query: 69  EANIDFRISDNGSSISV-----PSSMVGKAR 94
           +A +  R+   G+ +SV     P      AR
Sbjct: 347 DAGVTHRVQRGGNMLSVFFTAEPVGDFATAR 377


>gi|294893480|ref|XP_002774493.1| serine/threonine-protein kinase chk2, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879886|gb|EER06309.1| serine/threonine-protein kinase chk2, putative [Perkinsus marinus
           ATCC 50983]
          Length = 945

 Score = 37.2 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 107/376 (28%), Gaps = 46/376 (12%)

Query: 76  ISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
           +S  G    V    +    +  A +GLP  +      +  K+     +S       V   
Sbjct: 525 LSRCGDIAEVVRKDLSDMVLF-AEEGLPDEAMAGLDSVKAKLQGMSASSEELHAHYVEF- 582

Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLV 195
           EG++ + I  +          V+    + ++          I A      K    I   V
Sbjct: 583 EGKVQKIIVGLP-------TTVVGIPSAQQRE---------ITAKAIMDAKEV--IDSDV 624

Query: 196 AAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGV 255
             +        +++++S+     ++ M  +   ++LS      +E   ++   L      
Sbjct: 625 KMSTDG---PKISLVESSSSANDSSNMGNSSGRRTLSRRSKRANERLDSLLDRLRNLPSD 681

Query: 256 DNFRSAVVAELNMDTQQIREIVYDP--DSKVERSIRLSKDAQRSETSQPESAVTVEQNMP 313
               SAV  + +    ++ E++  P   +         +    S + +       E    
Sbjct: 682 GKIISAVDGKGDAIDSEVAELLDLPFLAAGYVGGYSEKRKKPESSSDESAVVSDKELEAQ 741

Query: 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLG 373
                      +++ +D++E   +         +   +      +  + V +  +    G
Sbjct: 742 GERAAWSVSDETMKKSDEEESIPS-------RKSDMPSGSDSEATAQLAVTRKLVNNG-G 793

Query: 374 RSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILS 433
                  I   + ++             R D I      F +  +  S        +  +
Sbjct: 794 SDPTAALIADSMRKLR------------RIDQILHKVTVFWQ-GVDQSVAKLSDMRENAA 840

Query: 434 RHFATVINALVFLVGT 449
           R  +    +   L   
Sbjct: 841 RLLSGTTKSARILAVF 856


>gi|108797670|ref|YP_637867.1| glutamate-1-semialdehyde aminotransferase [Mycobacterium sp. MCS]
 gi|119866757|ref|YP_936709.1| glutamate-1-semialdehyde aminotransferase [Mycobacterium sp. KMS]
 gi|123070668|sp|Q1BE73|GSA_MYCSS RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; Short=GSA;
           AltName: Full=Glutamate-1-semialdehyde aminotransferase;
           Short=GSA-AT
 gi|257096484|sp|A1UAR1|GSA_MYCSK RecName: Full=Glutamate-1-semialdehyde 2,1-aminomutase; Short=GSA;
           AltName: Full=Glutamate-1-semialdehyde aminotransferase;
           Short=GSA-AT
 gi|108768089|gb|ABG06811.1| glutamate-1-semialdehyde 2,1-aminomutase [Mycobacterium sp. MCS]
 gi|119692846|gb|ABL89919.1| glutamate-1-semialdehyde 2,1-aminomutase [Mycobacterium sp. KMS]
          Length = 438

 Score = 37.2 bits (84), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 9   QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68
           +  +    LG        S   V +   +A     +   Y  L    +      ++ AL+
Sbjct: 288 EVMERLAPLGPVYQAGTLSGNPVAMAAGLATLRTADDAVYAALDKNADRL-AGLLTDALT 346

Query: 69  EANIDFRISDNGSSISV-----PSSMVGKAR 94
           +A +  R+   G+ +SV     P      AR
Sbjct: 347 DAGVTHRVQRGGNMLSVFFTAEPVGDFATAR 377


>gi|207728004|ref|YP_002256398.1| transmembrane sensor histidine kinase protein [Ralstonia
           solanacearum MolK2]
 gi|206591248|emb|CAQ56860.1| transmembrane sensor histidine kinase protein [Ralstonia
           solanacearum MolK2]
          Length = 507

 Score = 37.2 bits (84), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 17/170 (10%)

Query: 399 NSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH 458
           +   G  I +      +     +       +D  ++    +I  ++  +  +LV F    
Sbjct: 161 DRIHGAEIRVAYTYVQQPGDRPALVQVAETLDKRAQLANEIIKGVILPLAVILVWFGLTR 220

Query: 459 ALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQ------------ 506
            L  L+ I +  +    G +       +    T L+ + N  L    Q            
Sbjct: 221 GLAPLNAIQELIRARSPGDTSPIDEGAAPQELTPLVASFNELLGRLEQSVQTQKRFIADA 280

Query: 507 --DIFSHSRNLQSRINSYVSKQSDLRLLHM---IEINEERFAKILRKWAR 551
              + +    L+ +      +QS   L      I  + +R A ++++   
Sbjct: 281 AHQMKTPLAGLRMQAELAQREQSPDELRRTLAHIADSSDRTAHLVKQLLS 330


>gi|213585522|ref|ZP_03367348.1| flagellar MS-ring protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 39

 Score = 37.2 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 182 PSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL 216
               K  + I+++V+AAVP L   +V + D +G L
Sbjct: 4   KLTRKQIDGIKNIVSAAVPKLTKENVKISDQSGVL 38


>gi|160895468|ref|YP_001561050.1| CzcA family heavy metal efflux protein [Delftia acidovorans SPH-1]
 gi|160361052|gb|ABX32665.1| heavy metal efflux pump, CzcA family [Delftia acidovorans SPH-1]
          Length = 1034

 Score = 37.2 bits (84), Expect = 8.4,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 138/515 (26%), Gaps = 72/515 (13%)

Query: 20  TRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDN 79
            R  ++    L  ++    +  ++          +L+  D       L +      IS  
Sbjct: 525 RRRAMIVIASLAILVAAGVSAAWLG----TEFLPELDEGDA----YVLVQM--PASISLE 574

Query: 80  GSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSF----GLTSF 125
                    ++   R+ L            QG P S +++  E  +         G   +
Sbjct: 575 KG-----QEVLRDVRLRLKTFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKGHGEW 627

Query: 126 MQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
            + +T+ + +E  +  T+  I G+     +   P   S  +  +     V+++   P   
Sbjct: 628 RKGLTKPQLIEQ-MRATLSEIPGVSF---NFAQPIRDSVEESTSGARGQVVLKVFGP-DI 682

Query: 186 KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
               +I       V ++D     V+D     L  +     +  +      A Q       
Sbjct: 683 PQLRSILQQTVDLVKDID----GVVDLG---LYRDAPAPQVHVEFDRQSLARQGIAMETA 735

Query: 246 NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
            K L A L   N                      P     R   + +  +    +     
Sbjct: 736 QKTLEAAL-AGNI------------STTLWEGEYPVPVRVRLPYVDRMDEERIRNIAIPL 782

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQS-----NYEINTKSIATTHDNYKLERLSIA 360
                   H   +      +     +   +      N E      +   D     + ++ 
Sbjct: 783 PNGGSVPLHSVGQVAIKIGNSSIFREGNARYMALKFNVE-GRDIGSVVKDTLATFKKNVK 841

Query: 361 VVVNKGRLTEVLGRSADQGKIDSYLA---EINKIVSAATGINS---RRGDTITITSMDFL 414
           +      +    G   +Q +  + L     ++ I+  A    +    R   I +    F 
Sbjct: 842 IPEGYQAVWG--GEWENQQRAAARLKIVVPLSLIIVYALLFGALGQARSAGIILLCAPF- 898

Query: 415 ENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474
              +     +  + +++        I  L  +    L+    +  LRR          E 
Sbjct: 899 -TMVGGIAALHFAGIELSISAAIGFIALLGQVALAGLLVISAVEELRRQGMPMMQALVEG 957

Query: 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIF 509
             + + S   ++     GL+P        S     
Sbjct: 958 AAERMRSIVLVALLALLGLLPMALSTGVGSETQKP 992


>gi|221069738|ref|ZP_03545843.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
 gi|220714761|gb|EED70129.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
          Length = 1037

 Score = 36.8 bits (83), Expect = 8.5,   Method: Composition-based stats.
 Identities = 72/562 (12%), Positives = 148/562 (26%), Gaps = 68/562 (12%)

Query: 19   RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
              R   + +V +  +++   +  ++          +L+  D   +            IS 
Sbjct: 524  AKRRTAVIAVFVSVLVVAGVSAKWLG----TEFLPELDEGDAYVLVQM------PASISL 573

Query: 79   NGSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
                      ++   R+ L            QG P S +++  E  +            E
Sbjct: 574  EKG-----QEVLRDVRLRLKVFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKPHGE 626

Query: 129  ITR---VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
              +     AL  E+  T+  I G+     +   P   S  +  +     V+++   P   
Sbjct: 627  WRKGLTKPALIEEMRATLGEIPGVAF---NFAQPIRDSVEESTSGARGQVVLKLFGP-DI 682

Query: 186  KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
             +  +I     + V ++D     V+D     L  +     +  +      A Q     + 
Sbjct: 683  PTLRSILQQTKSLVRDID----GVVDLD---LYRDAPAPQVHVQFDRQALARQGIAMEDA 735

Query: 246  NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
             K L   L   N   A           +R  +   D   E  IR          S P  +
Sbjct: 736  QKTLEVAL-AGN--VATTLWEGEFPVPVRVRLPYVDRMDEERIRNIAIPLPDGGSVPLGS 792

Query: 306  VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
            V         S                 E           +   D     + ++ +    
Sbjct: 793  VGTVSMKVGNSSIFREGNARYMALKFNVE------GRDIGSVVKDTLATFKQNVKLPEGY 846

Query: 366  GRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINS---RRGDTITITSMDFLENQLF 419
              +    G   +Q +  + L  +  +   +  A    +    R   I +    F      
Sbjct: 847  QAVWG--GEWENQQRAAARLKVVVPLSLVIVYALLFGALGQARSAGIILLCAPFAMVG-- 902

Query: 420  NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                + ++ +++        I  L  +    L+    +  LRR          E   + +
Sbjct: 903  GIAALHLAHIELSISAAIGFIALLGQVALAGLLVVSAVEDLRRQGMPLMQALIEGAAERM 962

Query: 480  LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             S   ++     GL+P        S       S  +   +   +     L  +    +  
Sbjct: 963  RSIILVALLALLGLLPMALSTGVGSETQRPFASVIVGGMVVLPLVALVLLP-VLYALLGP 1021

Query: 540  ERFAKILRKWARSEIEDRYTQH 561
                   +     E  D   Q 
Sbjct: 1022 -------KNMLTQEERDESAQD 1036


>gi|264676160|ref|YP_003276066.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
            CNB-2]
 gi|262206672|gb|ACY30770.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
            CNB-2]
          Length = 1037

 Score = 36.8 bits (83), Expect = 9.6,   Method: Composition-based stats.
 Identities = 71/562 (12%), Positives = 146/562 (25%), Gaps = 68/562 (12%)

Query: 19   RTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISD 78
              R   + +V +  +++   +  ++          +L+  D   +            IS 
Sbjct: 524  AKRRTAVIAVFVSVLVVAGVSAKWLG----TEFLPELDEGDAYVLVQM------PASISL 573

Query: 79   NGSSISVPSSMVGKARIHLA----------AQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128
                      ++   R+ L            QG P S +++  E  +            +
Sbjct: 574  EKG-----QEVLRDVRLRLKVFPEVITVTTEQGRPESGTDN--ETLNLAKVLVRLKPHGD 626

Query: 129  ITR---VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVY 185
              +     AL  E+  T+  I G+     +   P   S  +  +     V+++   P   
Sbjct: 627  WRKGLTKPALIEEMRATLGEIPGVAF---NFAQPIRDSVEESTSGARGQVVLKLFGP-DI 682

Query: 186  KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNI 245
             +   I     + V  +D     V+D     L  +     +  +      A Q     + 
Sbjct: 683  PTLRGILQQTKSLVKGID----GVVDLD---LYRDAPAPQVHVQFDRQALARQGIAMEDA 735

Query: 246  NKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESA 305
             K L   L   N   A           +R  +   D   E  IR          S P  +
Sbjct: 736  QKTLEVAL-AGN--VATTLWEGEFPVPVRVRLPYVDRMDEERIRNIAIPLPDGGSVPLGS 792

Query: 306  VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
            V         S                 E           +   D     + ++ +    
Sbjct: 793  VGTVSMKIGNSSIFREGNARYMALKFNVE------GRDIGSVVKDTLATFKQNVKLPEGY 846

Query: 366  GRLTEVLGRSADQGKIDSYLAEINKI---VSAATGINS---RRGDTITITSMDFLENQLF 419
              +    G   +Q +  + L  +  +   +  A    +    R   I +    F      
Sbjct: 847  QAVWG--GEWENQQRAAARLKVVVPLSLVIVYALLFGALGQARSAGIILLCAPFAMVG-- 902

Query: 420  NSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSI 479
                + ++ +++        I  L  +    L+    +  LRR          E   + +
Sbjct: 903  GIAALHLAHIELSISAAIGFIALLGQVALAGLLVVSAVEDLRRQGMPLMQALIEGAAERM 962

Query: 480  LSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINE 539
             S   ++     GL+P        S       S  +   +   +     L  +    +  
Sbjct: 963  RSIILVALLALLGLLPMALSTGVGSETQRPFASVIVGGMVVLPLVALVLLP-VLYALLGP 1021

Query: 540  ERFAKILRKWARSEIEDRYTQH 561
                   +     E  D   Q 
Sbjct: 1022 -------KNMLTQEERDESAQD 1036


>gi|240278606|gb|EER42112.1| nuclear export protein Noc3 [Ajellomyces capsulatus H143]
          Length = 221

 Score = 36.8 bits (83), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 29/86 (33%)

Query: 462 RLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINS 521
           +  N    K  E   + +  P     +        D++      + +     ++ +++  
Sbjct: 58  KEKNRLPIKTAEGTIEHVSEPIVEDDSEDLFDSDEDDVEEQPEAEVVEKPKPHVPAKVQI 117

Query: 522 YVSKQSDLRLLHMIEINEERFAKILR 547
             +K+   R+  +I  + E    + +
Sbjct: 118 LKAKEELARIAELINEDPEEHTGLFK 143


>gi|189238710|ref|XP_969341.2| PREDICTED: similar to AGAP009638-PA [Tribolium castaneum]
 gi|270010078|gb|EFA06526.1| hypothetical protein TcasGA2_TC009430 [Tribolium castaneum]
          Length = 3589

 Score = 36.8 bits (83), Expect = 10.0,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 43/128 (33%), Gaps = 3/128 (2%)

Query: 217  LTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREI 276
            +T    +  +      + +  + EI  + +      +G         ++   D     ++
Sbjct: 3239 ITGEFQDMTMQKSQFVVTRGERAEIRKHEDSL---TIGNGKTEYITTSKETFDKTTPTKV 3295

Query: 277  VYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQS 336
            V  P +    + R   ++  +  S      T  Q+  +   +K+    +    +   + +
Sbjct: 3296 VTSPATPGSINRRRHIESHITLGSDTAVMQTTNQSNYNTYTKKIDRQSTTGRNEVANKTT 3355

Query: 337  NYEINTKS 344
            N   ++K+
Sbjct: 3356 NVATDSKT 3363


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.306    0.113    0.256 

Lambda     K      H
   0.267   0.0346    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,335,004,019
Number of Sequences: 14124377
Number of extensions: 68844045
Number of successful extensions: 497938
Number of sequences better than 10.0: 2747
Number of HSP's better than 10.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 898
Number of HSP's that attempted gapping in prelim test: 486523
Number of HSP's gapped (non-prelim): 4348
length of query: 563
length of database: 4,842,793,630
effective HSP length: 145
effective length of query: 418
effective length of database: 2,794,758,965
effective search space: 1168209247370
effective search space used: 1168209247370
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 83 (36.8 bits)