RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
         (563 letters)



>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 27.0 bits (60), Expect = 4.1
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 311 NMPHVSDRKVPLPRSLENTDKK--------EEQSNYEINTKSIATTH-DNYKLERLSIAV 361
           + P   +  + LP  + NT KK         ++  Y  N  +    H D   L+R+ +A 
Sbjct: 50  SRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMAC 109

Query: 362 VVNKGRLTE 370
            +  G  + 
Sbjct: 110 GLESGSCSA 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,894,725
Number of extensions: 85534
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 5
Length of query: 563
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 473
Effective length of database: 1,171,896
Effective search space: 554306808
Effective search space used: 554306808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)