HHsearch alignment for GI: 254780696 and conserved domain: TIGR01235
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=98.78 E-value=1e-07 Score=70.91 Aligned_cols=263 Identities=17% Similarity=0.242 Sum_probs=152.6
Q ss_pred HHHHHHHHHCCCEEE--EEEHHHEEEEC---CEEE--EEEEEEEEECC-CCCEEEECCCCCC-CHHHCCEEEEECCCCCC
Q ss_conf 999999998898899--99541248999---8999--99999998077-7412650464435-21006366883288622
Q gi|254780696|r 25 FAIALEAQVRGYQIF--HYTPDQLYMRD---SKIY--ANTQPLSLDEK-KEQYYSLGEEKII-DLSQMDVILIRQDPPFN 95 (316)
Q Consensus 25 ~~Lm~eAq~RGheV~--~~~~~dL~~~~---g~v~--A~~~~i~i~~~-~~~~f~~~~~~~~-~L~~fD~i~iR~dPp~d 95 (316)
T Consensus 12 IRvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vDaiHPGY----- 86 (1169)
T TIGR01235 12 IRVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVDAIHPGY----- 86 (1169)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCC-----
T ss_conf 246423101387269996531574557402341001147631010268721304715698996007897770885-----
Q ss_pred HHHHH-HHHHHHHHCC-CCEEE-CCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHHHHHHHHHHHH-HHHHHCCC
Q ss_conf 47999-9999986235-85041-17488752565034334543-----044310-0037245568888521-43311168
Q gi|254780696|r 96 MHYIT-STYLLEKINP-ETLIV-NNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDITQITRFYLEMK-DIIIKPLY 165 (316)
Q Consensus 96 ~~yi~-~~~~Le~~~~-~~~vi-N~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~~~~~f~~~~~-~vViKPl~ 165 (316)
T Consensus 87 -GfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPvi~KAs~ 165 (1169)
T TIGR01235 87 -GFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPVIIKASY 165 (1169)
T ss_pred -CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -6224887899999868956737974777540576899988887788763688687525999999997569958987216
Q ss_pred CCCCCCEEEECCCCCCHHH-----HHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEE------EEEEEECCCC
Q ss_conf 8543446874488711588-----9999984001334002105344568269999899---886------3212204568
Q gi|254780696|r 166 GNGGTGVFRITLGDRNFSS-----LIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPV------GAVNRIPSEV 231 (316)
Q Consensus 166 g~~G~gV~~i~~~~~~~~~-----~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v------~a~~R~~~~~ 231 (316)
T Consensus 166 GGGGRGMRvvR-~~~dv~~~~~rA~sEA~AAFGnd~~yvEklie~pkH--iEvQ~LGD~~GNVVHLFERDCSVQRRhQKV 242 (1169)
T TIGR01235 166 GGGGRGMRVVR-SEEDVADAFQRAKSEAKAAFGNDEVYVEKLIERPKH--IEVQLLGDKHGNVVHLFERDCSVQRRHQKV 242 (1169)
T ss_pred CCCCCCCEEEC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCE--EEEEEEECCCCCEEEEEECCCCCEEECCEE
T ss_conf 88972016860-756799998887688731048980698510248820--789876348898788875077620005507
Q ss_pred CCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEEE-EEEE----C-C-EEEEEECCCCHHHHH---HHHHCCC
Q ss_conf 6000000147311100778999-9999999999984987999-9511----7-8-788983688303788---9975199
Q gi|254780696|r 232 DNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFTG-IDVI----G-D-YITEINVTSPTCIRE---IHRNGGE 300 (316)
Q Consensus 232 ~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~G-iDii----g-~-~i~EvNvtsP~g~~~---~~~~~~~ 300 (316)
T Consensus 243 --v------E~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvN---pRiQVEHTvTE~iTGi 311 (1169)
T TIGR01235 243 --V------EVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVN---PRIQVEHTVTEEITGI 311 (1169)
T ss_pred --E------EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEC---CCEEEEEEEEEEECCC
T ss_conf --8------8678877888899999999999987428988872488555488937789988---8000115586467340
Q ss_pred CHHHHHH
Q ss_conf 9899999
Q gi|254780696|r 301 NVASLFW 307 (316)
Q Consensus 301 ~i~~~i~ 307 (316)
T Consensus 312 DiV~aQI 318 (1169)
T TIGR01235 312 DIVQAQI 318 (1169)
T ss_pred HHHHHHH
T ss_conf 3777899