HHsearch alignment for GI: 254780696 and conserved domain: TIGR02291
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=99.54 E-value=6.3e-14 Score=111.67 Aligned_cols=172 Identities=25% Similarity=0.417 Sum_probs=112.2
Q ss_pred CHHHHHHHHH----HCCCCE-EECCHHH---HHHHHHHHHHHHHHCCCCCCCCCEEEECCCC------------------
Q ss_conf 5034334543----044310-0037245---5688885214331116885434468744887------------------
Q gi|254780696|r 126 EKIFVTEFSE----LMPPTL-ISRDITQ---ITRFYLEMKDIIIKPLYGNGGTGVFRITLGD------------------ 179 (316)
Q Consensus 126 eKl~~~~~~~----~~P~T~-vt~~~~~---~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~------------------ 179 (316)
T Consensus 37 DKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eeiE 116 (320)
T TIGR02291 37 DKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEIE 116 (320)
T ss_pred CHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHHH
T ss_conf 13678899873367110130100234665434666278898367266067987279970366884035410101545677
Q ss_pred CCHHHHHHHHHH-HCCCCCCEEECC-------CCC-CCC--CEEEEEECCEEEEEEEEECC-CCCCCCCCCCCCCEEEEE
Q ss_conf 115889999984-001334002105-------344-568--26999989988632122045-686000000147311100
Q gi|254780696|r 180 RNFSSLIEMLFE-KYPEPLMIQSYL-------PQI-RDG--DKRILLLNGKPVGAVNRIPS-EVDNRSNIHAGGKAELTK 247 (316)
Q Consensus 180 ~~~~~~~e~~~~-~~~~~ii~Qefi-------~~~-~~g--D~Rv~vi~g~~v~a~~R~~~-~~~~r~Nl~~Gg~~~~~~ 247 (316)
T Consensus 117 ~hvSniL~GLySLGG~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKANLHQGAvGvGiD 196 (320)
T TIGR02291 117 RHVSNILAGLYSLGGKRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKANLHQGAVGVGID 196 (320)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 88888887776507997736885320105344771113458726896418610210027656788830212460242023
Q ss_pred CC-----------------------------HHH---HHHHHHHHHHHHHCCCEEEEEEEE-----CCEEEEEECCCCHH
Q ss_conf 77-----------------------------899---999999999999849879999511-----78788983688303
Q gi|254780696|r 248 LT-----------------------------KID---LDICKRIGESLRERGLFFTGIDVI-----GDYITEINVTSPTC 290 (316)
Q Consensus 248 lt-----------------------------~~~---~~i~~~~~~~L~~~gl~~~GiDii-----g~~i~EvNvtsP~g 290 (316)
T Consensus 197 laTG~t~~a~w~n~pi~~HPDTg~~~sglq~PhW~~ll~LAa~c~el~---GLGY~GvD~VLDke~GPlvLELNA-RPGL 272 (320)
T TIGR02291 197 LATGKTLRAVWLNQPIEKHPDTGKDVSGLQVPHWEKLLKLAAECYELV---GLGYLGVDMVLDKEKGPLVLELNA-RPGL 272 (320)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHC---CCCCCCEEEEEECCCCCEEEEECC-CCCC
T ss_conf 114503212420676145838887535101667778999998775430---676002106874579881786447-8872
Q ss_pred HHHHHHHCCCC
Q ss_conf 78899751999
Q gi|254780696|r 291 IREIHRNGGEN 301 (316)
Q Consensus 291 ~~~~~~~~~~~ 301 (316)
T Consensus 273 ~IQIAN~~Gl~ 283 (320)
T TIGR02291 273 AIQIANDAGLL 283 (320)
T ss_pred HHHHHCCCCCC
T ss_conf 12231314533