HHsearch alignment for GI: 254780696 and conserved domain: pfam08443
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=100.00 E-value=1.9e-35 Score=252.81 Aligned_cols=180 Identities=26% Similarity=0.478 Sum_probs=159.1
Q ss_pred CCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH-H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 565034334543----044310003724556888852-1-4331116885434468744887115889999984001334
Q gi|254780696|r 124 SPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM-K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPL 197 (316)
Q Consensus 124 ~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~-~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~i 197 (316)
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~-~~el~~~~~~~~-~~~~~v 78 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAED-EQSLEQLLEAFK-WLKNQI 78 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEC-HHHHHHHHHHHH-HCCCCE
T ss_conf 978899999999879797998998899999999998089838996788999845588606-377778888886-348737
Q ss_pred CEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE-
Q ss_conf 0021053445682699998998863212204568600000014731110077899999999999999849879999511-
Q gi|254780696|r 198 MIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI- 276 (316)
Q Consensus 198 i~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii- 276 (316)
T Consensus 79 lvqefI~~~~~~dirv~vi~~~~~~~~~~~~~~~~~~~n~~~g~~~~~~~l~~e~~e~a~~a~~al---gl~~~gVD~~~ 155 (190)
T pfam08443 79 LVQEFIAEAGNRDIRCLVVGGEVVGAIHRQSNEGDFRTNLHRGGVAEPYQLSQEEEEIAIKAAQAM---GLDVLGVDIFR 155 (190)
T ss_pred EEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEE
T ss_conf 755566047885489999606336789997466762143246862458766889999999999973---89979999999
Q ss_pred ---CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf ---7878898368830378899751999899999999
Q gi|254780696|r 277 ---GDYITEINVTSPTCIREIHRNGGENVASLFWDGI 310 (316)
Q Consensus 277 ---g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~i 310 (316)
T Consensus 156 ~~~g~~vlEvN-~~P-g~~~~~~~~g~~i~~~i~~~i 190 (190)
T pfam08443 156 SKRGLLVCEVN-SSP-GLKGIERTTGINIAIKLIEYI 190 (190)
T ss_pred ECCCEEEEEEC-CCC-CCHHHHHHHCCCHHHHHHHHC
T ss_conf 79967999966-984-604789887949999998449