HHsearch results for GI: 254780696 and protein with PDBid: 1vkz_A

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.77  E-value=4.5e-07  Score=65.35  Aligned_cols=270  Identities=15%  Similarity=0.201  Sum_probs=146.6

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf             96533189970998884847646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL   80 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L   80 (316)
                      |+. |||+++..-=        ---||++..++.++++|.+. ..=....   .+.+..    -+....|.       ..
T Consensus        13 ~~~-~rVLviGsGg--------REHAia~~l~~s~~~v~~~p-gN~g~~~---~~~~~~----~~~~~~~~-------~~   68 (412)
T 1vkz_A           13 MKA-VRVHILGSGG--------REHAIGWAFAKQGYEVHFYP-GNAGTKR---DGTNHP----YEGEKTLK-------AI   68 (412)
T ss_dssp             ----CEEEEEECSH--------HHHHHHHHHHHTTCEEEEEE-CCTTGGG---TSEECC----CCTHHHHH-------TS
T ss_pred             HHC-CEEEEECCCH--------HHHHHHHHHHCCCCCEEEEC-CCHHHHH---HCCCCC----CCHHHHHH-------HH
T ss_conf             426-7899999788--------99999999856998089968-9878874---254468----50078776-------40


Q ss_pred             HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH
Q ss_conf             0063668832886224799999999862358504117488752565034334543----044310003724556888852
Q gi|254780696|r   81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM  156 (316)
Q Consensus        81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~  156 (316)
                      .+.|.+++--.-|.- .++     -+... . .+--+..+.+...+|.++-+|.+    ++|+-...++.+++.+|++++
T Consensus        69 ~~~dlvvvgpE~pL~-~gl-----~d~~~-~-vfGPs~~aA~LE~SK~faK~~m~~~~IPta~~~~f~~~~ea~~~~~~~  140 (412)
T 1vkz_A           69 PEEDIVIPGSEEFLV-EGV-----SNWRS-N-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKF  140 (412)
T ss_dssp             CSSCEECCSSGGGTC-C----------CT-T-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTS
T ss_pred             CCCCEEEECCCHHHH-HHH-----HHCCC-C-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             479989989789999-778-----87588-7-449798999988759999999997088988511026799999998717


Q ss_pred             H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCEEECCCCCCCCCEEEEEE-CC-EEE--EE---E
Q ss_conf             1-43311168854344687448871158899999840----013340021053445682699998-99-886--32---1
Q gi|254780696|r  157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK----YPEPLMIQSYLPQIRDGDKRILLL-NG-KPV--GA---V  224 (316)
Q Consensus       157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~----~~~~ii~Qefi~~~~~gD~Rv~vi-~g-~~v--~a---~  224 (316)
                      + |+|+||-...+|+||+.+...++....+.+.+...    ....++++||+...   +.-++++ || .++  ..   +
T Consensus       141 ~~PvVIKadgla~GKGV~i~~~~~ea~~~~~~~~~~~~~~~~~~~vvIEe~l~G~---E~S~~~~~dG~~~~~lp~~qD~  217 (412)
T 1vkz_A          141 SPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGN---ELSAMAVVNGRNFVILPFVRDY  217 (412)
T ss_dssp             CSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCSE---EEEEEEEEETTEEEECCCCEEC
T ss_pred             CCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCC---EEEEEEEECCCEEEECCCCCCC
T ss_conf             9978997086678886489841576899999860242026763025547555796---2379999438959989540023


Q ss_pred             EEECCCCCCCCCCCCCC--CEEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECCC--CH
Q ss_conf             22045686000000147--31110077899----999999999999849879999511-------78788983688--30
Q gi|254780696|r  225 NRIPSEVDNRSNIHAGG--KAELTKLTKID----LDICKRIGESLRERGLFFTGIDVI-------GDYITEINVTS--PT  289 (316)
Q Consensus       225 ~R~~~~~~~r~Nl~~Gg--~~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvts--P~  289 (316)
                      .|. -.||-=.|  .||  ...+..+...+    .++.......|.+.|+.|.|+=.+       |+||+|+|+--  |.
T Consensus       218 Kr~-~dgd~Gpn--TGGMGa~sp~~~~~~~~~~~~~ii~~~~~~l~~eg~~y~GiLy~glmit~~gpkvlE~N~RfGDPE  294 (412)
T 1vkz_A          218 KRL-MDGDRGPN--TGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPE  294 (412)
T ss_dssp             CEE-ETTTEEEE--CSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEESSCCTTH
T ss_pred             CCC-CCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCC
T ss_conf             110-16999999--887876478775567888889999999999997499667155135587189856999633558950


Q ss_pred             HHHHHHHHCCCCHHHHHHHH
Q ss_conf             37889975199989999999
Q gi|254780696|r  290 CIREIHRNGGENVASLFWDG  309 (316)
Q Consensus       290 g~~~~~~~~~~~i~~~i~d~  309 (316)
                       .+-+-.+...|+...+++.
T Consensus       295 -~q~ll~ll~~dl~~~~~~~  313 (412)
T 1vkz_A          295 -TEVIVTLNPEGFVNAVLEG  313 (412)
T ss_dssp             -HHHHHHHCHHHHHHHHHHH
T ss_pred             -HHHEECCCHHHHHHHHHHH
T ss_conf             -4210023504679999998