HHsearch results for GI: 254780696 and protein with PDBid: 2fb9_A
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.45 E-value=8.6e-12 Score=96.26 Aligned_cols=219 Identities=15% Similarity=0.182 Sum_probs=139.5
Q ss_pred CCHHHCCEEEEECCCCCCH-HHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHH
Q ss_conf 5210063668832886224-79999999986235850-4117488752565034334543----0443100037245568
Q gi|254780696|r 78 IDLSQMDVILIRQDPPFNM-HYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITR 151 (316)
Q Consensus 78 ~~L~~fD~i~iR~dPp~d~-~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~ 151 (316)
+....+|+||+=..=.+-. ..+. .+||.+ ++. +-.++.+...|.||..+-++.+ ++|+..+..+.+..
T Consensus 72 ~~~~~~D~vf~~~hG~~gEdg~~q--~~le~~--gipy~Gs~~~~~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~~~-- 145 (322)
T 2fb9_A 72 LSWERYDVVFPLLHGRFGEDGTVQ--GFLELL--GKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPP-- 145 (322)
T ss_dssp CCCTTCSEEEEECCSTTTTSSHHH--HHHHHH--TCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCC--
T ss_pred HHHCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHH--
T ss_conf 763389899999878754488999--999983--99851488778877439999999999839985334332220235--
Q ss_pred HHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEEEEEEEE
Q ss_conf 88852-14331116885434468744887115889999984001334002105344568269999899---886321220
Q gi|254780696|r 152 FYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPVGAVNRI 227 (316)
Q Consensus 152 f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v~a~~R~ 227 (316)
..+. .|+|+||.+|.++.||.++. +.+++...++... .+...+++++|+. ...++.|-++++ ++.......
T Consensus 146 -~~~~~~P~ivKP~~~gsS~Gv~~v~-~~~el~~a~~~~~-~~~~~~~~e~~i~--~g~E~~v~v~~~~~~~~~~~~~~~ 220 (322)
T 2fb9_A 146 -VVPFDPPFFVKPANTGSSVGISRVE-RFQDLEAALALAF-RYDEKAVVEKALS--PVRELEVGVLGNVFGEASPVGEVR 220 (322)
T ss_dssp -CCCSCSCEEEEETTCCTTTTCEEES-SHHHHHHHHHHHT-TTCSEEEEEECCS--SCEEEEEEEESSSSCEEEEEEEEE
T ss_pred -HHCCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHH-CCCCCCCCHHEEE--CCEEEEEEEEECCCCCEEEEEEEC
T ss_conf -5325886899726888776866836-8999999987530-0222334200131--230899999723446220135531
Q ss_pred CCCC--CCCCCCCCCCCE--EEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE----CCEEEEEECCCCH-----
Q ss_conf 4568--600000014731--110077----8999999999999998498-79999511----7878898368830-----
Q gi|254780696|r 228 PSEV--DNRSNIHAGGKA--ELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI----GDYITEINVTSPT----- 289 (316)
Q Consensus 228 ~~~~--~~r~Nl~~Gg~~--~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii----g~~i~EvNvtsP~----- 289 (316)
+..+ ++.+....+... .+..++ ++.+++|.++.+.| |+ .++.||++ ..|++||| |.||
T Consensus 221 ~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~i~~~a~k~~~~L---g~~g~~rvDf~~~~g~~yvlEvN-t~PGlt~~s 296 (322)
T 2fb9_A 221 YEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVL---GVRGMARVDFFLAEGELYLNELN-TIPGFTPTS 296 (322)
T ss_dssp EECCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHHHHHHHH---TCCSEEEEEEEEETTEEEEEEEE-SSCCCSSSC
T ss_pred CCCCCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEEEECCEEEEEEEE-CCCCCCCCC
T ss_conf 34576424116823763114687414667568999999999981---99617999999999989999866-989988577
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 3788997519998999999998
Q gi|254780696|r 290 CIREIHRNGGENVASLFWDGIE 311 (316)
Q Consensus 290 g~~~~~~~~~~~i~~~i~d~ie 311 (316)
.+..+-++.|++.++.+-.-++
T Consensus 297 ~~p~~a~~~G~~~~~li~~ii~ 318 (322)
T 2fb9_A 297 MYPRLFEAGGVAYPELLRRLVE 318 (322)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8999999809999999999999