HHsearch results for GI: 254780696 and protein with PDBid: 2pvp_A
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1}
Probab=99.71 E-value=3.8e-16 Score=124.79 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=157.3
Q ss_pred CEEEEEECCHHHCCCCCCC----HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEE-----------EEEEEEECCCCCE
Q ss_conf 3189970998884847646----799999999889889999541248999899999-----------9999980777412
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDS----TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYAN-----------TQPLSLDEKKEQY 69 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DT----T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~-----------~~~i~i~~~~~~~ 69 (316)
||||+++= .-....|- -.++..+..+||+.+-+++.+..++........ ...+....+.
T Consensus 21 mkiaVl~G---G~S~Eh~vSl~Sa~~i~~aL~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 94 (367)
T 2pvp_A 21 MEFCVLFG---GASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKKLPPLILTHNG--- 94 (367)
T ss_dssp CCEEEEEE---CSSTTHHHHHHHHHHHHHHHGGGEEEEEEECTTCCEEECCGGGCSHHHHHTGGGSCCCCBEEETTE---
T ss_pred CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHCCCC---
T ss_conf 88999908---585301879999999999874259789999389988983713214432344662320012210365---
Q ss_pred EEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC
Q ss_conf 6504644352100636688328862247999999998623585-04117488752565034334543----044310003
Q gi|254780696|r 70 YSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR 144 (316)
Q Consensus 70 f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~ 144 (316)
+...........++|++|.-...++..++. .-.+||.+ +. ++-.++.+...|.||..+-++.. ++|++.+.+
T Consensus 95 ~~~~~~~~~~~~~~d~vf~~~HG~~GEdG~-iq~~Le~~--gipy~Gs~~~as~i~~DK~~~k~~l~~~gI~tp~~~~~~ 171 (367)
T 2pvp_A 95 LLKNSFLGAKIIELPLVINLVHGGDGEDGK-LASLLEFY--RIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLN 171 (367)
T ss_dssp EEEEETTEEEEEECCSEEECCCSTTTTSSH-HHHHHHHT--TCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEEC
T ss_pred CCCCCCCCCCEECCCEEEECCCCCCCCCHH-HHHHHHHC--CCCEECCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 210012466211268999967898764579-99999986--996778789999975595998888987299956311344
Q ss_pred CHHHHHHH-HHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC--CEE
Q ss_conf 72455688-8852-1433111688543446874488711588999998400133400210534456826999989--988
Q gi|254780696|r 145 DITQITRF-YLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN--GKP 220 (316)
Q Consensus 145 ~~~~~~~f-~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~--g~~ 220 (316)
+.+....+ ..+. .|+|+||..|.+|.||.++. +..++...++..... ...+++||||+... ++.|.+++ +..
T Consensus 172 ~~~~~~~~~~~~~~~P~vvKP~~~gsS~GV~~v~-~~~el~~ai~~~~~~-~~~vlVEe~I~G~~--E~~v~v~~~~~~~ 247 (367)
T 2pvp_A 172 EKNRANALDLMNFNFPFIVKPSNAGSSLGVNVVK-EEKELIYALDSAFEY-SKEVLIEPFIQGVK--EYNLAGCKIKKDF 247 (367)
T ss_dssp TTTGGGHHHHCCSCSCEEEEESSCCTTTTCEEES-STTSHHHHHHHHTTT-CSCEEEEECCTTCE--EEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE-CCHHHHHHHHHHHHH-CCCEEEEEECCCCE--EEEEEEECCCCCE
T ss_conf 4447889998765998899956645789878996-133179999998761-44135788627978--7478774268952
Q ss_pred EEEEEEECCCCC---CCCCCCCCCCE--EEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----CCEEEEEECC
Q ss_conf 632122045686---00000014731--110077899----9999999999998498-79999511----7878898368
Q gi|254780696|r 221 VGAVNRIPSEVD---NRSNIHAGGKA--ELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI----GDYITEINVT 286 (316)
Q Consensus 221 v~a~~R~~~~~~---~r~Nl~~Gg~~--~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii----g~~i~EvNvt 286 (316)
...+.+.+..++ +.+....++.. .+..++++. +++|.++.+.| |+ -+++||++ +.|++||| |
T Consensus 248 ~~~~i~~~~~~~~~dy~~k~~~~~~~~~~pa~l~~~~~~~i~~~a~k~~~~l---g~~G~~rvDf~~~~~~~yviEIN-t 323 (367)
T 2pvp_A 248 CFSYIEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDL---FDGAIIRCDFFVIENEVYLNEIN-P 323 (367)
T ss_dssp EEEEEEETTTTEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTT---STTCCEEEEEEEETTEEEEEEEE-S
T ss_pred EEEEEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCEEEEEEEC-C
T ss_conf 6578997145440353032244640424777799999999999999999996---99376999999999999999861-9
Q ss_pred CCHHHHH
Q ss_conf 8303788
Q gi|254780696|r 287 SPTCIRE 293 (316)
Q Consensus 287 sP~g~~~ 293 (316)
.| |+..
T Consensus 324 ~P-G~t~ 329 (367)
T 2pvp_A 324 IP-GSLA 329 (367)
T ss_dssp SC-GGGG
T ss_pred CC-CCCC
T ss_conf 89-9973