HHsearch results for GI: 254780696 and protein with PDBid: 3e5n_A

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV}
Probab=99.71  E-value=7.3e-15  Score=116.37  Aligned_cols=288  Identities=13%  Similarity=0.144  Sum_probs=168.3

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHH----HHHHHHHCCCEEEEEEH--HH-EEEECCEE-------------EEEEEEE
Q ss_conf             96533189970998884847646799----99999988988999954--12-48999899-------------9999999
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFA----IALEAQVRGYQIFHYTP--DQ-LYMRDSKI-------------YANTQPL   60 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~----Lm~eAq~RGheV~~~~~--~d-L~~~~g~v-------------~A~~~~i   60 (316)
                      |+| |||++++=   ...+..+-|+.    ++++..+.||++..+..  +. .++.....             ......+
T Consensus        20 M~k-~kv~vl~G---G~S~E~eiSl~Sa~~v~~~L~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (386)
T 3e5n_A           20 MRK-IRVGLIFG---GKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGV   95 (386)
T ss_dssp             -CC-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCE
T ss_pred             CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCHHHHHCCCCHHHHCCCCCCCCE
T ss_conf             876-77999979---78873899999999999975464798999998589987945724643325864440224467604


Q ss_pred             EEECCCC-CEEEECCCCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH--
Q ss_conf             9807774-12650464435210063668832-8862247999999998623585-04117488752565034334543--
Q gi|254780696|r   61 SLDEKKE-QYYSLGEEKIIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE--  135 (316)
Q Consensus        61 ~i~~~~~-~~f~~~~~~~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~--  135 (316)
                      .+..... .... .-.....+.++|++|+=. .++-....+.  .+||.+  +. ++-.+|.+...|-||..+-++.+  
T Consensus        96 ~~~~~~~~~~~~-~~~~~~~~~~~D~vf~~lhG~~GEdG~iq--~lle~~--gipytGs~~~asal~~DK~~~K~il~~~  170 (386)
T 3e5n_A           96 ALLPGAQQQQLR-PIQPEQALAQIDVVFPIVHGTLGEDGSLQ--GLLRMA--NLPFVGSGVLGSAVAMDKDMAKRVLRDA  170 (386)
T ss_dssp             EECTTCSSSCEE-ECC--CCCCCCSEEEEEECSHHHHSSHHH--HHHHHT--TCCBSSCCHHHHHHHHBHHHHHHHHHHT
T ss_pred             EECCCCCHHCCC-CCCCHHHCCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCCCCCCHHHHHHCCCCCCCHHHHHHC
T ss_conf             523652010012-34421112568889986778986583999--999974--9997998989996526866108899763


Q ss_pred             --HCCCCEEECCHHH----HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             --0443100037245----568888521-433111688543446874488711588999998400133400210534456
Q gi|254780696|r  136 --LMPPTLISRDITQ----ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRD  208 (316)
Q Consensus       136 --~~P~T~vt~~~~~----~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~  208 (316)
                        ++|+.+.....+.    +....++.+ |+|+||..|.++.||.+++.. .++...+.... .+...+++|+||+   +
T Consensus       171 gIptp~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~-~el~~~~~~a~-~~~~~vlvEefI~---G  245 (386)
T 3e5n_A          171 RLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTA-DAFAAALALAL-AYDHKVLVEAAVA---G  245 (386)
T ss_dssp             TCCBCCEEEEEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSG-GGHHHHHHHHT-TTCSEEEEEECCC---S
T ss_pred             CCCCCCCEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEECCH-HHHHHHHHHHH-CCCHHHCCCCCCC---E
T ss_conf             89875311100222035678888886189724345787668885265069-99999998621-2340001233112---0


Q ss_pred             CCEEEEEECCE---EEEEEEEECCCCC--CCCCCCCCCCE---EEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf             82699998998---8632122045686--00000014731---110077----8999999999999998498-7999951
Q gi|254780696|r  209 GDKRILLLNGK---PVGAVNRIPSEVD--NRSNIHAGGKA---ELTKLT----KIDLDICKRIGESLRERGL-FFTGIDV  275 (316)
Q Consensus       209 gD~Rv~vi~g~---~v~a~~R~~~~~~--~r~Nl~~Gg~~---~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDi  275 (316)
                      .++-|-++++.   +.....+++..+.  +......++..   .+..++    ++.+++|.++.+.|   |+ .++.||+
T Consensus       246 rEitV~v~g~~~~~~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~~~i~~~A~ka~~aL---g~~g~~RiDf  322 (386)
T 3e5n_A          246 REIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQAL---GCAGMARVDV  322 (386)
T ss_dssp             EEEEEEEECSSSCEEEEEEEECC-----------------CEESSCSSCHHHHHHHHHHHHHHHHHH---TCCSEEEEEE
T ss_pred             EEEEEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEE
T ss_conf             4999975354335434444376057653156764303773102664333899999999999999984---9982699999


Q ss_pred             E----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHH
Q ss_conf             1----7-878898368830-----37889975199989999
Q gi|254780696|r  276 I----G-DYITEINVTSPT-----CIREIHRNGGENVASLF  306 (316)
Q Consensus       276 i----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i  306 (316)
                      +    | .|++||| |.||     .+..+-+..|++..+.+
T Consensus       323 ~ld~dG~~y~lEvN-t~PGlt~~S~~p~~a~~~G~s~~~li  362 (386)
T 3e5n_A          323 FLCADGRIVINEVN-TLPGFTRISVYPKLWQASGLDYRGLI  362 (386)
T ss_dssp             EECTTCCEEEEEEE-SSCCCSTTCHHHHHHHTTTCCHHHHH
T ss_pred             EEECCCCEEEEEEE-CCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             99379958999810-97898865689999998099999999