HHsearch results for GI: 254780696 and protein with PDBid: 3i12_A
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium}
Probab=99.65 E-value=2.5e-13 Score=106.28 Aligned_cols=285 Identities=11% Similarity=0.143 Sum_probs=165.4
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCH----HHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCC---------
Q ss_conf 965331899709988848476467----9999999988988999954124899989999999999807774---------
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDST----FAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKE--------- 67 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT----~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~--------- 67 (316)
|.| |||++++= ......+-| ..+.++..+.||++..+... .+|.-+. .-.........
T Consensus 1 m~k-~ki~vl~G---G~S~E~evSl~Sg~~v~~~L~~~~~~v~~i~i~----~~g~w~~-~~~~~~~~~~~~~~~~~~~~ 71 (364)
T 3i12_A 1 MAK-LRVGIVFG---GKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID----KAGQWHV-NDAENYLQNADDPAHIALRP 71 (364)
T ss_dssp -CC-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC----TTSCEEE-ECSSSSBSSTTCTTTCCBCC
T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHCHHCCEEEEEEEC----CCCCEEE-CCHHHHHHCCCCHHHHHCCC
T ss_conf 998-78999969---468738999999999999756547979999985----8998873-55576543157603320375
Q ss_pred ---CEEE---------ECCCCCCCHHHCCEEEEECCCCCCHHH-HHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHH
Q ss_conf ---1265---------046443521006366883288622479-99999998623585-041174887525650343345
Q gi|254780696|r 68 ---QYYS---------LGEEKIIDLSQMDVILIRQDPPFNMHY-ITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEF 133 (316)
Q Consensus 68 ---~~f~---------~~~~~~~~L~~fD~i~iR~dPp~d~~y-i~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~ 133 (316)
..-. ........+..+|++|+=---+...++ +- .+||.+ +. ++-.+|.+...|-||..+-++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~~hG~~gEdg~iq--~~Le~~--~ipytGs~~~as~l~~DK~~~k~~ 147 (364)
T 3i12_A 72 SAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--GMLRVA--NLPFVGSDVLSSAACMDKDVAKRL 147 (364)
T ss_dssp CSCBEEECTTCSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHH--HHHHHT--TCCBSSCCHHHHHHHHCHHHHHHH
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCCCCCCHHHHHHCCCHHHHHHH
T ss_conf 4210001554322110002244544314689984678887685999--999975--998628898999760990377999
Q ss_pred HH----HCCCCEEECCHHH----HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 43----0443100037245----568888521-43311168854344687448871158899999840013340021053
Q gi|254780696|r 134 SE----LMPPTLISRDITQ----ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLP 204 (316)
Q Consensus 134 ~~----~~P~T~vt~~~~~----~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~ 204 (316)
.. ++|+..+....+. ...+....+ |+|+||..|.++.||.+++. ..++...++.... +...+++|+||+
T Consensus 148 l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~~~~P~ivKP~~~GsS~Gv~~v~~-~~el~~~~~~~~~-~~~~vlvEefI~ 225 (364)
T 3i12_A 148 LRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVAN-EAQYQQAVALAFE-FDHKVVVEQGIK 225 (364)
T ss_dssp HHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESS-HHHHHHHHHHHHH-HCSEEEEEECCC
T ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEECC-HHHHHHHHHHHHH-HHHHCCHHCEEE
T ss_conf 99859986326874033113455788777617977887766788887524221-7779999999887-401001103572
Q ss_pred CCCCCCEEEEEECC---EEEEEEEEECCCCCCCCCC--CCCC---CEEEEECCHHH----HHHHHHHHHHHHHCCC-EEE
Q ss_conf 44568269999899---8863212204568600000--0147---31110077899----9999999999998498-799
Q gi|254780696|r 205 QIRDGDKRILLLNG---KPVGAVNRIPSEVDNRSNI--HAGG---KAELTKLTKID----LDICKRIGESLRERGL-FFT 271 (316)
Q Consensus 205 ~~~~gD~Rv~vi~g---~~v~a~~R~~~~~~~r~Nl--~~Gg---~~~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~ 271 (316)
+.++.|-++++ .++....+.+..+.+-.+. ..+. ...+..++++. +++|.++.+.| |+ .++
T Consensus 226 ---G~E~tV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~e~~~~i~~~A~~a~~~L---g~~g~~ 299 (364)
T 3i12_A 226 ---GREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTL---GCAGMA 299 (364)
T ss_dssp ---SEEEEEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHT---TCCEEE
T ss_pred ---EEEEEEEECCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCEE
T ss_conf ---27999851454465353114532466654400110366653345661004999999999999999971---998469
Q ss_pred EEEEE----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHH
Q ss_conf 99511----7-878898368830-----378899751999899999
Q gi|254780696|r 272 GIDVI----G-DYITEINVTSPT-----CIREIHRNGGENVASLFW 307 (316)
Q Consensus 272 GiDii----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~ 307 (316)
.||++ | .|++||| |.|| .+...-+..|++..+.+-
T Consensus 300 RvDf~~d~~g~~yvlEvN-t~PGlt~~S~~p~~~~~~G~s~~~li~ 344 (364)
T 3i12_A 300 RVDVFLTADNEVVINEIN-TLPGFTNISMYPKLWQASGLGYTDLIS 344 (364)
T ss_dssp EEEEEECTTCCEEEEEEE-SSCCCSTTCHHHHHHHTTTCCHHHHHH
T ss_pred EEEEEEECCCCEEEEEEE-CCCCCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf 888999189968999865-899988666799999981989999999