Query         gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs    185 out of 1614
Neff          7.0 
Searched_HMMs 23785
Date          Tue May 31 17:05:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780696.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1gsa_A Glutathione synthetase; 100.0       0       0  623.0  36.4  312    4-315     1-314 (316)
  2 2p0a_A Synapsin-3, synapsin II 100.0 1.1E-37 4.5E-42  266.0   0.9  288    7-314     2-324 (344)
  3 1uc8_A LYSX, lysine biosynthes 100.0 1.1E-32 4.5E-37  233.3  19.3  255   24-313    13-278 (280)
  4 1i7n_A Synapsin II; synapse, p 100.0 3.7E-31 1.6E-35  223.2  12.6  285    5-314     2-307 (309)
  5 1pk8_A RAT synapsin I; ATP bin 100.0 1.5E-29 6.3E-34  212.7  12.2  220   83-313   181-418 (422)
  6 2q7d_A Inositol-tetrakisphosph  99.9 1.5E-26 6.3E-31  193.0  16.4  257    3-315    17-332 (346)
  7 1iow_A DD-ligase, DDLB, D-ALA\  99.8 7.9E-17 3.3E-21  129.3  23.5  270    1-311     1-303 (306)
  8 2i87_A D-alanine-D-alanine lig  99.8   1E-16 4.4E-21  128.5  18.7  286    1-307     1-335 (364)
  9 3lwb_A D-alanine--D-alanine li  99.7 1.3E-15 5.3E-20  121.4  19.1  295    3-310     9-362 (373)
 10 2pvp_A D-alanine-D-alanine lig  99.7 3.8E-16 1.6E-20  124.8  15.0  271    5-293    21-329 (367)
 11 3e5n_A D-alanine-D-alanine lig  99.7 7.3E-15 3.1E-19  116.4  21.5  288    1-306    20-362 (386)
 12 1z2n_X Inositol 1,3,4-trisphos  99.7 1.1E-15 4.8E-20  121.7  14.7  200   81-294    55-304 (324)
 13 3k3p_A D-alanine--D-alanine li  99.7 4.8E-14   2E-18  111.0  21.6  282    1-308    35-366 (383)
 14 1ehi_A LMDDL2, D-alanine:D-lac  99.7 5.4E-14 2.3E-18  110.7  21.0  274    1-310     1-348 (377)
 15 1e4e_A Vancomycin/teicoplanin   99.7 5.4E-14 2.3E-18  110.7  20.7  297    1-312     1-339 (343)
 16 3df7_A Putative ATP-grAsp supe  99.7 1.4E-15 5.7E-20  121.2  12.3  191   79-310    66-272 (305)
 17 3i12_A D-alanine-D-alanine lig  99.6 2.5E-13 1.1E-17  106.3  23.0  285    1-307     1-344 (364)
 18 2pn1_A Carbamoylphosphate synt  99.6 6.9E-15 2.9E-19  116.6  10.5  262   26-310    17-294 (331)
 19 3ouz_A Biotin carboxylase; str  99.5 4.8E-11   2E-15   91.4  23.5  284    2-309     4-319 (446)
 20 2dwc_A PH0318, 433AA long hypo  99.5 1.4E-12 5.7E-17  101.5  14.8  273    4-310    19-321 (433)
 21 2fb9_A D-alanine:D-alanine lig  99.5 8.6E-12 3.6E-16   96.3  16.6  219   78-311    72-318 (322)
 22 3eth_A Phosphoribosylaminoimid  99.4 7.2E-12   3E-16   96.7  15.6  249    4-310     1-266 (355)
 23 2dzd_A Pyruvate carboxylase; b  99.4 6.7E-11 2.8E-15   90.4  18.9  275    1-308     3-318 (461)
 24 3hbl_A Pyruvate carboxylase; T  99.4 5.6E-11 2.4E-15   90.9  16.9  284    1-309     1-317 (1150)
 25 2yw2_A Phosphoribosylamine--gl  99.4 4.3E-11 1.8E-15   91.7  16.0  278    5-310     1-312 (424)
 26 2ip4_A PURD, phosphoribosylami  99.3 4.5E-10 1.9E-14   85.0  15.4  278    5-312     1-308 (417)
 27 2vpq_A Acetyl-COA carboxylase;  99.2 9.5E-09   4E-13   76.3  21.9  266   23-309    12-315 (451)
 28 2yrx_A Phosphoribosylglycinami  99.2 2.2E-09 9.4E-14   80.4  16.5  278    2-311    19-334 (451)
 29 3k5i_A Phosphoribosyl-aminoimi  99.2   3E-09 1.2E-13   79.6  17.0  267    4-309    24-314 (403)
 30 2r85_A PURP protein PF1517; AT  99.2   5E-11 2.1E-15   91.2   7.8  240   20-285     9-286 (334)
 31 1ulz_A Pyruvate carboxylase N-  99.2 1.1E-08 4.7E-13   75.9  18.5  193  110-308    97-313 (451)
 32 3lp8_A Phosphoribosylamine-gly  99.1   2E-08 8.5E-13   74.2  19.1  216   82-312    83-335 (442)
 33 2r7k_A 5-formaminoimidazole-4-  99.1 6.8E-09 2.9E-13   77.2  13.7  237   22-284    27-312 (361)
 34 3glk_A Acetyl-COA carboxylase   99.0 1.8E-08 7.7E-13   74.4  15.3  217   81-309   122-387 (540)
 35 1a9x_A Carbamoyl phosphate syn  99.0 3.9E-09 1.6E-13   78.9  11.9  281    4-308     7-325 (1073)
 36 3jrx_A Acetyl-COA carboxylase   99.0 5.4E-08 2.3E-12   71.4  17.0  212   81-309   138-403 (587)
 37 1kjq_A GART 2, phosphoribosylg  99.0 6.7E-08 2.8E-12   70.7  17.4  269    5-309    12-305 (391)
 38 1w96_A ACC, acetyl-coenzyme A   99.0 7.6E-08 3.2E-12   70.4  17.0  276    3-309    46-394 (554)
 39 2qk4_A Trifunctional purine bi  99.0 1.9E-08 7.8E-13   74.4  13.5  218   81-311    87-340 (452)
 40 1a9x_A Carbamoyl phosphate syn  99.0 5.3E-08 2.2E-12   71.4  15.5  194  110-309   657-868 (1073)
 41 2w70_A Biotin carboxylase; lig  98.9 2.8E-08 1.2E-12   73.2  12.9  281    3-308     1-314 (449)
 42 3n6x_A Putative glutathionylsp  98.9 2.1E-09 8.7E-14   80.6   6.9  203   23-246   229-469 (474)
 43 2pbz_A Hypothetical protein; N  98.8 2.4E-08   1E-12   73.7   9.4  252    4-303     2-289 (320)
 44 1vkz_A Phosphoribosylamine--gl  98.8 4.5E-07 1.9E-11   65.3  14.7  270    1-309    13-313 (412)
 45 3mjf_A Phosphoribosylamine--gl  98.8 3.3E-07 1.4E-11   66.2  14.0  280    4-311     3-319 (431)
 46 3n6r_A Propionyl-COA carboxyla  98.7 1.1E-07 4.5E-12   69.4  10.7  192  110-309    98-315 (681)
 47 2qf7_A Pyruvate carboxylase pr  98.6 5.6E-07 2.3E-11   64.7  11.7  189  111-308   118-334 (1165)
 48 2z04_A Phosphoribosylaminoimid  98.6 1.9E-06 7.9E-11   61.2  12.6  257    4-308     1-276 (365)
 49 2io8_A Bifunctional glutathion  98.0 3.3E-05 1.4E-09   53.1   9.4  200    7-229   381-601 (619)
 50 2vob_A Trypanothione synthetas  97.7  0.0017   7E-08   41.9  13.6  188    6-229   397-616 (652)
 51 2cqy_A Propionyl-COA carboxyla  97.4 7.3E-05 3.1E-09   50.9   3.3   85  123-208     5-101 (108)
 52 3k1t_A Glutamate--cysteine lig  95.4   0.048   2E-06   32.4   6.8   88  159-246   280-380 (432)
 53 1wr2_A Hypothetical protein PH  92.6    0.11 4.8E-06   29.9   4.2   80  135-216    34-127 (238)
 54 2nu8_B SCS-beta, succinyl-COA   88.9    0.48   2E-05   25.8   4.5   71  133-204    15-103 (388)
 55 3fro_A GLGA glycogen synthase;  86.8    0.41 1.7E-05   26.3   3.1   39    3-44      1-44  (439)
 56 2iuy_A Avigt4, glycosyltransfe  86.5    0.65 2.7E-05   24.9   4.0   43    3-45      2-57  (342)
 57 2p6p_A Glycosyl transferase; G  86.2     0.7 2.9E-05   24.8   4.0   37    5-45      1-38  (384)
 58 2gek_A Phosphatidylinositol ma  85.2    0.51 2.1E-05   25.7   2.9   40    3-44     19-61  (406)
 59 2jjm_A Glycosyl transferase, g  84.1    0.73 3.1E-05   24.6   3.3   40    3-44     14-53  (394)
 60 1iir_A Glycosyltransferase GTF  83.3     1.1 4.6E-05   23.5   3.9   38    5-46      1-39  (415)
 61 3dhn_A NAD-dependent epimerase  82.6     1.3 5.4E-05   23.0   4.1   39    1-46      1-41  (227)
 62 3ia7_A CALG4; glycosysltransfe  81.6     1.6 6.8E-05   22.4   4.3   40    1-45      2-42  (402)
 63 3iaa_A CALG2; glycosyltransfer  79.8     1.9 7.9E-05   21.9   4.1   40    2-45     18-58  (416)
 64 2hy5_A Putative sulfurtransfer  79.2     1.6 6.6E-05   22.5   3.6   37    5-41      1-38  (130)
 65 2fp4_B Succinyl-COA ligase [GD  79.1     2.2 9.4E-05   21.4   4.3   36  135-170    17-56  (395)
 66 3cky_A 2-hydroxymethyl glutara  78.4     2.9 0.00012   20.7   4.7  106    1-129     1-113 (301)
 67 2qzs_A Glycogen synthase; glyc  77.2     1.3 5.3E-05   23.1   2.6   36    5-43      1-42  (485)
 68 1rrv_A Glycosyltransferase GTF  77.1     1.9 8.1E-05   21.9   3.5   38    5-46      1-39  (416)
 69 2r60_A Glycosyl transferase, g  76.3     3.9 0.00016   19.8   5.2   41    1-42      4-57  (499)
 70 2iw1_A Lipopolysaccharide core  75.8       2 8.3E-05   21.8   3.3   37    5-44      1-40  (374)
 71 1rzu_A Glycogen synthase 1; gl  71.3       3 0.00012   20.6   3.3   40    5-44      1-43  (485)
 72 2d1p_A TUSD, hypothetical UPF0  69.2     3.6 0.00015   20.1   3.4   39    3-41     11-50  (140)
 73 1wwk_A Phosphoglycerate dehydr  67.4     3.9 0.00016   19.9   3.2   38  229-277   223-260 (307)
 74 3c48_A Predicted glycosyltrans  67.2     4.1 0.00017   19.7   3.3   40    3-43     19-67  (438)
 75 2hy5_B Intracellular sulfur ox  67.1     3.5 0.00015   20.2   2.9   43    3-45      4-46  (136)
 76 1rtt_A Conserved hypothetical   67.0     4.8  0.0002   19.3   3.6   41    1-46      3-47  (193)
 77 3fgn_A Dethiobiotin synthetase  58.9     8.8 0.00037   17.5   4.0   38    4-43     25-63  (251)
 78 2iyf_A OLED, oleandomycin glyc  58.8     8.9 0.00037   17.5   4.5   38    5-46      8-46  (430)
 79 2d13_A Hypothetical protein PH  56.8     7.8 0.00033   17.9   3.2   34    1-41      1-34  (227)
 80 1y81_A Conserved hypothetical   54.4      10 0.00044   17.1   4.3   41    2-46     12-52  (138)
 81 1f0k_A MURG, UDP-N-acetylgluco  52.0      11 0.00048   16.8   4.6   40    1-44      2-43  (364)
 82 3doj_A AT3G25530, dehydrogenas  50.2      12 0.00051   16.6   4.3   35    2-44     19-53  (310)
 83 2iya_A OLEI, oleandomycin glyc  48.5      13 0.00054   16.5   3.4   37    5-45     13-50  (424)
 84 3mc3_A DSRE/DSRF-like family p  48.4      13 0.00054   16.4   3.7   42    3-45     14-56  (134)
 85 1mv8_A GMD, GDP-mannose 6-dehy  44.7      15 0.00062   16.1   4.7   33    5-45      1-33  (436)
 86 1sg0_A NRH dehydrogenase [quin  43.9      10 0.00043   17.1   2.1   38    5-47      3-45  (230)
 87 2d1p_B TUSC, hypothetical UPF0  43.7      14 0.00059   16.2   2.8   42    4-45      1-42  (119)
 88 3oy2_A Glycosyltransferase B73  43.6     9.6  0.0004   17.3   1.9   40    5-45      1-40  (413)
 89 3ff4_A Uncharacterized protein  41.9      16 0.00068   15.8   2.9   41    3-47      3-43  (122)
 90 2ift_A Putative methylase HI07  41.2      12 0.00051   16.6   2.2   19   26-44     66-85  (201)
 91 2hjs_A USG-1 protein homolog;   40.3      17 0.00072   15.6   7.8  103    1-127     3-108 (340)
 92 3n05_A NH(3)-dependent NAD(+)   35.5     7.1  0.0003   18.1   0.2   43    1-43      1-45  (590)
 93 3h4t_A Glycosyltransferase GTF  35.0      21 0.00087   15.1   2.9   23   24-46     17-39  (404)
 94 3gd5_A Otcase, ornithine carba  34.4      19  0.0008   15.4   2.3   77   18-120    57-134 (323)
 95 2fhz_A Colicin-E5 immunity pro  30.8      24   0.001   14.7   3.3   33  238-274    20-52  (109)
 96 2fhp_A Methylase, putative; al  29.8      19 0.00081   15.3   1.7   12  114-125    73-84  (187)
 97 1jx7_A Hypothetical protein YC  28.5      26  0.0011   14.4   3.1   38    4-42      1-41  (117)
 98 1vpd_A Tartronate semialdehyde  28.4      27  0.0011   14.4   4.8  105    3-129     4-114 (299)
 99 2q3e_A UDP-glucose 6-dehydroge  27.2      28  0.0012   14.3   4.6   37    1-45      2-40  (467)
100 2fpo_A Methylase YHHF; structu  26.9      27  0.0011   14.4   2.0   10  116-125    85-94  (202)
101 1oc2_A DTDP-glucose 4,6-dehydr  26.8      27  0.0011   14.3   2.0   38    1-45      1-38  (348)
102 1dbq_A Purine repressor; trans  26.8      26  0.0011   14.4   1.9   43    2-45      5-47  (289)
103 2gk4_A Conserved hypothetical   25.2      30  0.0013   14.0   3.3   20   23-42     31-50  (232)
104 3ivz_A Nitrilase; alpha-beta s  25.2      18 0.00076   15.5   0.9   39    4-42      1-41  (262)
105 3da5_A Argonaute; PAZ domain,   24.2      17 0.00072   15.7   0.6   28  141-168    14-53  (128)
106 3g0o_A 3-hydroxyisobutyrate de  22.6      34  0.0014   13.7   4.1   34    3-44      6-39  (303)
107 1wxc_B MELC; tyrosinase, binar  22.2      34  0.0014   13.7   3.7   43  214-264    74-116 (134)
108 1u7z_A Coenzyme A biosynthesis  21.4      36  0.0015   13.6   3.3   20   23-42     36-55  (226)
109 3m9w_A D-xylose-binding peripl  21.4      36  0.0015   13.5   3.5   41    3-44      1-41  (313)
110 2h78_A Hibadh, 3-hydroxyisobut  20.4      37  0.0016   13.4   4.7   33    4-44      3-35  (302)
111 2o3j_A UDP-glucose 6-dehydroge  20.2      38  0.0016   13.4   4.7   38    2-45      7-44  (481)
112 2f6u_A GGGPS, (S)-3-O-geranylg  20.2      38  0.0016   13.4   1.7   27   16-42     14-40  (234)
113 3keg_A FMN-dependent NADH-azor  20.1      38  0.0016   13.4   3.5   38    4-46      1-46  (212)

No 1  
>1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=100.00  E-value=0  Score=622.96  Aligned_cols=312  Identities=42%  Similarity=0.740  Sum_probs=300.5

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC
Q ss_conf             33189970998884847646799999999889889999541248999899999999998077741265046443521006
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM   83 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f   83 (316)
                      ||||||||||+++++|++|||++||+|||+|||++||++|+||++.+++++|.++++++.++...||....+...+|++|
T Consensus         1 mmki~fvmDpi~~i~~~~DTT~~L~~eA~kRGhev~~~~~~dL~i~~~~v~a~~~~v~~~~~~~~~~~~~~~~~~~l~~~   80 (316)
T 1gsa_A            1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADL   80 (316)
T ss_dssp             CCEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGS
T ss_pred             CCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEEECCCCCCCCCCCCCCEECHHHC
T ss_conf             93899993787876987766999999999879979998104289999999999999997168664222242102131227


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             366883288622479999999986235-8504117488752565034334543044310003724556888852143311
Q gi|254780696|r   84 DVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIK  162 (316)
Q Consensus        84 D~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~~~P~T~vt~~~~~~~~f~~~~~~vViK  162 (316)
                      |+||+|+|||||+.|++.+++|+.++. ++.|+|+|.++++++||+++++|++++|+|+++++.+++.+|+++++++|+|
T Consensus        81 D~I~~R~dPp~d~~y~~~~~~L~~~~~~gv~viN~~~ai~~~~~Kl~~~~~~~~~p~T~v~~~~~~~~~~~~~~~~~V~K  160 (316)
T 1gsa_A           81 DVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK  160 (316)
T ss_dssp             SEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTTTSCCEEEESCHHHHHHHHHHHSSEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCCCC
T ss_conf             43678846997678888878876513478510287799987677777764246789953763566659999714662112


Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEECCCCCCCCCCCCCC
Q ss_conf             168854344687448871158899999840013340021053445682699998998863-2122045686000000147
Q gi|254780696|r  163 PLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGG  241 (316)
Q Consensus       163 Pl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~Gg  241 (316)
                      |++|+||+||++++..+.+.....+.....+..++++|+|++++.+||+||+|+||++++ +++|.|++||||+|+|+||
T Consensus       161 pl~g~~G~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~D~Rv~vi~g~v~~a~~~r~~~~~~~r~N~~~Gg  240 (316)
T 1gsa_A          161 PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG  240 (316)
T ss_dssp             CSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCSSCSCCCGGGTC
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCEEEEEECCEEEEEEEEEECCCCCHHHHHHCCC
T ss_conf             25678888847981487036889998764067752789985230688369999999987899995068875321000697


Q ss_pred             CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             31110077899999999999999849879999511787889836883037889975199989999999988633
Q gi|254780696|r  242 KAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVASLFWDGIEKIKE  315 (316)
Q Consensus       242 ~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~~  315 (316)
                      +++++++|++++++|.++++.|++.||+|||||+||+|++|||+|||+||+++++++|+|+|+.+||++|+..+
T Consensus       241 ~~~~~~l~~~~~~~~~~~~~~l~~~gl~~~GvDiig~~~~EvNv~sp~g~~~i~~~~g~~ia~~i~~~~~~k~~  314 (316)
T 1gsa_A          241 RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ  314 (316)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             67872589789999999999998759989999875888899978895779999988698999999999999974


No 2  
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle transport, structural genomics, structural genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens}
Probab=100.00  E-value=1.1e-37  Score=266.02  Aligned_cols=288  Identities=13%  Similarity=0.082  Sum_probs=200.6

Q ss_pred             EEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE---------------EEEHHHEEEECCEEEEEEEEEEEECCC-----
Q ss_conf             899709988848476467999999998898899---------------995412489998999999999980777-----
Q gi|254780696|r    7 IAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF---------------HYTPDQLYMRDSKIYANTQPLSLDEKK-----   66 (316)
Q Consensus         7 I~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~---------------~~~~~dL~~~~g~v~A~~~~i~i~~~~-----   66 (316)
                      +||+|+|.......+++++.|+-..+..+|..|               -..-.++.+.            ...+.     
T Consensus         2 ~g~~~~p~p~~p~~k~~kilLvi~~~~~~~~~~f~~~~~~~~~~irve~a~~~~~~~~------------~~~~~~~~v~   69 (344)
T 2p0a_A            2 MGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLA------------AYVTGGCMVD   69 (344)
T ss_dssp             ---------------CCEEEEEECCSSCCGGGGGTTCEETTTEEEEEEEECGGGEEEE------------EETTSCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHEECCCCEEEE------------EECCCCEEEC
T ss_conf             7546799999886789859999679876789986565543121332002023314689------------8537770450


Q ss_pred             CCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHH----HCCCCE
Q ss_conf             41265046443521006366883288622479999999986235-8504117488752565034334543----044310
Q gi|254780696|r   67 EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTL  141 (316)
Q Consensus        67 ~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~  141 (316)
                      ..++..+........+.|+||+|..||+...+.+.+.+|+.++. |+.++|+|.+|++|.||.++..+..    .+|+|.
T Consensus        70 ~~~~~~~~~~~~~~~~pD~V~~R~~~~~~~~~~~~~~~l~~le~~Gv~~vNs~~ai~~~~dK~~~~~~L~~~g~~~p~~~  149 (344)
T 2p0a_A           70 MQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEK  149 (344)
T ss_dssp             EC----------CEECCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTT
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf             31135542013445689989993046633233049999999998797497889999763399999999997499999974


Q ss_pred             EE-----CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE
Q ss_conf             00-----3724556888852143311168854344687448871158899999840013340021053445682699998
Q gi|254780696|r  142 IS-----RDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL  216 (316)
Q Consensus       142 vt-----~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi  216 (316)
                      +.     ........+...+.|+|+||++|++|.||+++.. ...+...++.. ..+..++++|+||+..  .|+|++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~PvvvKp~~g~~G~Gv~~v~~-~~~l~~~~~~~-~~~~~~v~ve~fi~~~--~d~rv~vi  225 (344)
T 2p0a_A          150 FPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVEN-QLDFQDITSVV-AMAKTYATTEAFIDSK--YDIRIQKI  225 (344)
T ss_dssp             SCBCCCEEESSSTTCCCCSSSSEEEEESSCCTTTTEEEECS-HHHHHHHHHHH-HHHTCCEEEEECCCEE--EEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECC-HHHHHHHHHHH-HCCCCEEEEEECCCCC--EEEEEEEE
T ss_conf             11131324567777630369988999798788774377448-78866677654-2256417875022764--89999998


Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEC-----CEEEEEECCCCHHH
Q ss_conf             9988632122045686000000147311100778999999999999998498799995117-----87889836883037
Q gi|254780696|r  217 NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIG-----DYITEINVTSPTCI  291 (316)
Q Consensus       217 ~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig-----~~i~EvNvtsP~g~  291 (316)
                      ||++.++++| +..++||+|.+.|+ .+.++++++++++|.++++.|.  |+.|+|||++.     .|++|||.++++++
T Consensus       226 g~~~~a~~~~-~~~~~~~~n~~~g~-~~~~~~~~~~~~~~~~~~~~l~--~~~~~gVD~i~~~dG~~yvlEvN~~~~~l~  301 (344)
T 2p0a_A          226 GSNYKAYMRT-SISGNWKANTGSAM-LEQVAMTERYRLWVDSCSEMFG--GLDICAVKAVHSKDGRDYIIEVMDSSMPLI  301 (344)
T ss_dssp             TTEEEEEEEE-ESSSCSSTTSSSEE-EEEECCCHHHHHHHHHHTTGGG--CCSEEEEEEEEETTSCEEEEEEECTTCCCC
T ss_pred             CCEEEEEEEE-CCCCCCCCCCCCCC-EEECCCCHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf             9924578872-25764200313685-4550799899999999999819--962799999986899999999889984455


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             88997519998999999998863
Q gi|254780696|r  292 REIHRNGGENVASLFWDGIEKIK  314 (316)
Q Consensus       292 ~~~~~~~~~~i~~~i~d~ie~~~  314 (316)
                      .+.....+.++++.+++.++...
T Consensus       302 ~~~~~~~~~~i~dlv~~~~~~~~  324 (344)
T 2p0a_A          302 GEHVEEDRQLMADLVVSKMSQLP  324 (344)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             63243555539999999998752


No 3  
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=100.00  E-value=1.1e-32  Score=233.30  Aligned_cols=255  Identities=18%  Similarity=0.202  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf             79999999988988999954124899989999999999807774126504644352100636688328862247999999
Q gi|254780696|r   24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY  103 (316)
Q Consensus        24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~  103 (316)
                      ..+|++|++++||++..+++.+..+.                      . ......++.+|++++|..+..  ..++...
T Consensus        13 e~~l~~a~~~~G~~v~~v~~~~~~~~----------------------~-~~~~~~~~~~d~~~~~~~~~~--~~~~~~~   67 (280)
T 1uc8_A           13 ERMLFERAEALGLPYKKVYVPALPMV----------------------L-GERPKELEGVTVALERCVSQS--RGLAAAR   67 (280)
T ss_dssp             HHHHHHHHHHHTCCEEEEEGGGCCEE----------------------T-TBCCGGGTTCCEEEECCSSHH--HHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCCEE----------------------C-CCCCCCCCCCEEEEEEECCCC--CHHHHHH
T ss_conf             99999999977998999978976234----------------------4-776443103508999803566--0899999


Q ss_pred             HHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCC
Q ss_conf             99862358504117488752565034334543----0443100037245568888521-433111688543446874488
Q gi|254780696|r  104 LLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLG  178 (316)
Q Consensus       104 ~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~  178 (316)
                      ++|.+  |+.++|+|.+++.+.||..+.++.+    ++|+|.+.++.+++..+.++.+ |+|+||.+|++|+|+.++...
T Consensus        68 ~~e~~--g~~~~n~~~a~~~~~dK~~~~~~l~~~gip~P~~~~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~G~~~~~~~  145 (280)
T 1uc8_A           68 YLTAL--GIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXX  145 (280)
T ss_dssp             HHHHT--TCCEESCHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHH
T ss_pred             HHHHC--CCCEECCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             99988--9958799999987469999999999879796887997999999999997099689972888887676532111


Q ss_pred             CCC--HHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf             711--588999998400133400210534456826999989988632122045686000000147311100778999999
Q gi|254780696|r  179 DRN--FSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDIC  256 (316)
Q Consensus       179 ~~~--~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~  256 (316)
                      +..  .......+......++++||||+. .+.|+|++++||++++++.|.  .++|+.|.+.++....+.++++.++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~liqefI~~-~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (280)
T 1uc8_A          146 XXXXXXXXXKEVLGGFQHQLFYIQEYVEK-PGRDIRVFVVGERAIAAIYRR--SAHWITNTARGGQAENCPLTEEVARLS  222 (280)
T ss_dssp             HC------------CTTTTCEEEEECCCC-SSCCEEEEEETTEEEEEEEC----------------CEECCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHCCCCCCEEEEEEECC-CCCEEEEEEECCEEEEEEEEE--CCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             11110136788760347983999998368-883699999799899999952--245555553366444542314559999


Q ss_pred             HHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999999849879999511----7878898368830378899751999899999999886
Q gi|254780696|r  257 KRIGESLRERGLFFTGIDVI----GDYITEINVTSPTCIREIHRNGGENVASLFWDGIEKI  313 (316)
Q Consensus       257 ~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~  313 (316)
                      .++++.+   |+.|+|||++    |.|++||| +.| |+.+++..+|+|+++.++|+.-.+
T Consensus       223 ~~~~~al---gl~~~gvD~i~~~~g~~viEvN-~rp-g~~~~~~~~g~d~~~~iv~~al~l  278 (280)
T 1uc8_A          223 VKAAEAV---GGGVVAVDLFESERGLLVNEVN-HTM-EFKNSVHTTGVDIPGEILKYAWSL  278 (280)
T ss_dssp             HHHHHHT---TCSEEEEEEEEETTEEEEEEEE-TTC-CCTTHHHHHCCCHHHHHHHHHHHT
T ss_pred             HHHHHHH---CCCEEEEEEEEECCCEEEEEEC-CCC-CCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999983---9987999999989968999980-899-963079887927999999999865


No 4  
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97  E-value=3.7e-31  Score=223.18  Aligned_cols=285  Identities=13%  Similarity=0.084  Sum_probs=186.5

Q ss_pred             CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHEEEE---CCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf             3189970998884847646799999999889889999--54124899---989999999999807774126504644352
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQLYMR---DSKIYANTQPLSLDEKKEQYYSLGEEKIID   79 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL~~~---~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~   79 (316)
                      .||++++|     ++..|.+-.+.......++++..-  ...++.+.   ++...   ..+.....        ......
T Consensus         2 ~ki~lvid-----~~~~dw~k~f~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~---v~~~~~~~--------~~~~~~   65 (309)
T 1i7n_A            2 AKVLLVVD-----EPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYA---VDMQVLRN--------GTKVVR   65 (309)
T ss_dssp             EEEEEEEC-----CTTSCHHHHHTTCEETTTEEEEEEEECGGGEEEEEETTSCEE---EEEEECSS--------SSSEEE
T ss_pred             CEEEEEEC-----CCCCCHHHHHHCCHHCCCEEEEEEECCCCCHHHHHHHCCCEE---EEEEECCC--------CCCCCC
T ss_conf             46999975-----898567887310010460105887326431223223338728---99985167--------543310


Q ss_pred             HHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHH----HCC-CCEEE---CCHHHHH
Q ss_conf             1006366883288622479999999986235-8504117488752565034334543----044-31000---3724556
Q gi|254780696|r   80 LSQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSE----LMP-PTLIS---RDITQIT  150 (316)
Q Consensus        80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~----~~P-~T~vt---~~~~~~~  150 (316)
                      ....|++|+|..||+...+...+.+|..++. |+.|+|+|.+++.|.||.++.++..    .+| +++++   .+.....
T Consensus        66 ~~~~d~v~~r~~~~~~~~~~~~~~~l~~l~~~G~~vins~~ai~~~~dK~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~  145 (309)
T 1i7n_A           66 SFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHR  145 (309)
T ss_dssp             EECCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGG
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHH
T ss_conf             25797899887887301142599999999983998678389999863879999999972999998862105666378877


Q ss_pred             HHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECC
Q ss_conf             888852-1433111688543446874488711588999998400133400210534456826999989988632122045
Q gi|254780696|r  151 RFYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPS  229 (316)
Q Consensus       151 ~f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~  229 (316)
                      .+.... .|+|+||++|++|.||++++.. ..+...++.+ ..+...+++|+|++  ...|+|+.|+||++++++ |.+.
T Consensus       146 ~~~~~~~~P~vvKp~~g~~G~Gv~~v~~~-~~l~~~~~~~-~~~~~~v~ve~~i~--~~~d~rv~vi~~~~~~~~-~~~~  220 (309)
T 1i7n_A          146 EMLTLPTFPVVVKIGHAHSGMGKVKVENH-YDFQDIASVV-ALTQTYATAEPFID--AKYDIRVQKIGNNYKAYM-RTSI  220 (309)
T ss_dssp             GGSSCCCSSEEEEESSCSTTTTEEEECSH-HHHHHHHHHH-HHHTCCEEEEECCC--EEEEEEEEEETTEEEEEE-EESS
T ss_pred             HHHHCCCCCEEEEECCCCCCCCEEEEECH-HHHHHHHHHH-HCCCCCEEEEEEEC--CCCEEEEEEECCEEEEEE-EEEC
T ss_conf             76522699989997988899887999655-8899999999-72398158987614--672589999999888999-9954


Q ss_pred             CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCCHH-HHHHHHHCCCCHH
Q ss_conf             68600000014731110077899999999999999849879999511----7-8788983688303-7889975199989
Q gi|254780696|r  230 EVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSPTC-IREIHRNGGENVA  303 (316)
Q Consensus       230 ~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP~g-~~~~~~~~~~~i~  303 (316)
                      .++||+|.+.|+.. ...++++++++|.++++.+  .|+.++|||++    | .|++||| +||++ ..+.......+++
T Consensus       221 ~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~gvD~~~~~dG~~yvlEvN-~~p~~~~~~~~~~~~~~i~  296 (309)
T 1i7n_A          221 SGNWKTNTGSAMLE-QIAMSDRYKLWVDACSEMF--GGLDICAVKAVHGKDGKDYIFEVM-DCSMPLIGEHQVEDRQLIT  296 (309)
T ss_dssp             CTTTSCSCCCSSEE-EECCCHHHHHHHHHHTTGG--GCCSEEEEEEEEETTSCEEEEEEE-CTTCCCCSSCHHHHHHHHH
T ss_pred             CCCHHHCCCCCCCC-CCCCCHHHHHHHHHHHHHH--CCCCEEEEEEEECCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHH
T ss_conf             66412120256434-6777769999999999985--899689999999699999999982-9883321145777762099


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999998863
Q gi|254780696|r  304 SLFWDGIEKIK  314 (316)
Q Consensus       304 ~~i~d~ie~~~  314 (316)
                      +.+++.+++..
T Consensus       297 dlv~~~~~~~~  307 (309)
T 1i7n_A          297 DLVISKMNQLL  307 (309)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999975


No 5  
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.96  E-value=1.5e-29  Score=212.68  Aligned_cols=220  Identities=14%  Similarity=0.117  Sum_probs=159.1

Q ss_pred             CCEEEEECCCCC---CHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHH----H--HCCCCEEECCHH--HHHH
Q ss_conf             636688328862---2479999999986235850411748875256503433454----3--044310003724--5568
Q gi|254780696|r   83 MDVILIRQDPPF---NMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFS----E--LMPPTLISRDIT--QITR  151 (316)
Q Consensus        83 fD~i~iR~dPp~---d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~----~--~~P~T~vt~~~~--~~~~  151 (316)
                      =|+||+|+-++.   +..|-+.+..|+.+  |+.++|+|.+|.+|.||.++....    .  ..|+|.+.....  ....
T Consensus       181 PD~Vlvr~~~~~~~e~~d~r~lL~~Le~~--Gip~vNs~~sI~~~~DK~~~~~~L~~~~~~l~~p~~~li~~~~~~~~~~  258 (422)
T 1pk8_A          181 PDFVLIRQHAFSMARNGDYRSLVIGLQYA--GIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKE  258 (422)
T ss_dssp             CSEEEECSCSBCSSTTCBCHHHHHHHHHT--TCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGG
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHH
T ss_conf             98899866666633241699999999973--9870499999998605299999999732779999600035321256777


Q ss_pred             HHHH-HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC
Q ss_conf             8885-214331116885434468744887115889999984001334002105344568269999899886321220456
Q gi|254780696|r  152 FYLE-MKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE  230 (316)
Q Consensus       152 f~~~-~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~  230 (316)
                      +... ..|+|+||.+|++|.||++++ +...+..+++.+.. +...+++||||+.  ..|+|++++||+++++++|. ..
T Consensus       259 ~~~~~~~PvVVKp~~g~~G~Gv~~V~-~~~el~~~~~~~~~-~~~~v~vEefI~~--~~dirv~vig~~v~a~~~~~-~~  333 (422)
T 1pk8_A          259 MLSSTTYPVVVKMGHAHSGMGKVKVD-NQHDFQDIASVVAL-TKTYATAEPFIDA--KYDVRVQKIGQNYKAYMRTS-VS  333 (422)
T ss_dssp             CCCCSSSSEEEEESSCCTTTTEEEEC-SHHHHHHHHHHHHH-HTSCEEEEECCCE--EEEEEEEEETTEEEEEEEEE-SS
T ss_pred             HHHCCCCEEEEEECCCCCCCCEEEEC-CCCHHHHHHHHHHH-HCCEEEEEECCCC--CEEEEEEEECCEEEEEEEEE-CC
T ss_conf             65414872999757878778889977-92179999999986-1884999962578--67999999899899999982-68


Q ss_pred             CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCCHHH-HHHHHHCCCCHHH
Q ss_conf             8600000014731110077899999999999999849879999511----7-87889836883037-8899751999899
Q gi|254780696|r  231 VDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSPTCI-REIHRNGGENVAS  304 (316)
Q Consensus       231 ~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP~g~-~~~~~~~~~~i~~  304 (316)
                      ++|++|. .||..+.++++++.+++|.++++.|.  |+.++|||+|    | .||+||| .||.++ .+........|++
T Consensus       334 ~~~k~n~-~~g~~~~~~l~e~~k~~a~~a~~alg--g~~i~gVD~i~~kdG~~yilEVN-~sp~~l~~~~~~~d~~~i~d  409 (422)
T 1pk8_A          334 GNWKTNT-GSAMLEQIAMSDRYKLWVDTCSEIFG--GLDICAVEALHGKDGRDHIIEVV-GSSMPLIGDHQDEDKQLIVE  409 (422)
T ss_dssp             SCSSTTS-SCEEEEEECCCHHHHHHHHHHTTGGG--CCSEEEEEEEEETTSCEEEEEEE-CTTCCCCTTCHHHHHHHHHH
T ss_pred             CCCEECC-CCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHH
T ss_conf             8756223-47644314879999999999999818--98679999999279988999967-99743443126678889999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999886
Q gi|254780696|r  305 LFWDGIEKI  313 (316)
Q Consensus       305 ~i~d~ie~~  313 (316)
                      .+++.+.+.
T Consensus       410 lv~~~~~~~  418 (422)
T 1pk8_A          410 LVVNKMTQA  418 (422)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHHH
T ss_conf             999999987


No 6  
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4- 5/6-kinase, inositol phosphate, inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.95  E-value=1.5e-26  Score=193.01  Aligned_cols=257  Identities=13%  Similarity=0.155  Sum_probs=178.0

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHH---HHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf             53318997099888484764679---999999988988999954124899989999999999807774126504644352
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTF---AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID   79 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~---~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~   79 (316)
                      |.+|||+.|.      .++.|++   ++..+|.++|+++..++++.-                       +       ..
T Consensus        17 ~~~riG~~~~------e~k~s~~~~~~~~~~~~~~G~~~v~iD~~~~-----------------------l-------~~   60 (346)
T 2q7d_A           17 KGKRVGYWLS------EKKIKKLNFQAFAELCRKRGMEVVQLNLSRP-----------------------I-------EE   60 (346)
T ss_dssp             TTCEEEEECC------HHHHHHHTHHHHHHHHHTTTCEEEECCTTSC-----------------------S-------GG
T ss_pred             HCCEEEEEEC------HHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------------------H-------HH
T ss_conf             2477999964------3157564289999999978977999259999-----------------------5-------77


Q ss_pred             HHHCCEEEEECCCCCC------HHHHHHHHHHHHH---CCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC--
Q ss_conf             1006366883288622------4799999999862---358504117488752565034334543----044310003--
Q gi|254780696|r   80 LSQMDVILIRQDPPFN------MHYITSTYLLEKI---NPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR--  144 (316)
Q Consensus        80 L~~fD~i~iR~dPp~d------~~yi~~~~~Le~~---~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~--  144 (316)
                      ...||+|+.+.+.-|.      .+.......|+..   ..++.|+|+|.+++.|.||+++.+..+    ++|+|.+..  
T Consensus        61 q~~~Dvii~K~~~~~~~~~~~~~e~~~~~~~Le~~~~~~~g~~Vid~~~si~~~~dK~~~~~~l~~~~ip~p~~~v~~~~  140 (346)
T 2q7d_A           61 QGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP  140 (346)
T ss_dssp             GCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCC
T ss_pred             CCCCEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf             69833999645055421577743113799999999852899489679999887638999999999769999991586787


Q ss_pred             -------CHHHHHHHHHHH---HHHHHHCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEE
Q ss_conf             -------724556888852---14331116--885434468744887115889999984001334002105344568269
Q gi|254780696|r  145 -------DITQITRFYLEM---KDIIIKPL--YGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKR  212 (316)
Q Consensus       145 -------~~~~~~~f~~~~---~~vViKPl--~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~R  212 (316)
                             +.++....++..   .|+|+||+  .|+.|.|+.++.. ...+..        ...++++|||++. .+.|+|
T Consensus       141 ~~~~~~~~~~e~~~~~~~~~l~~P~VvKP~~a~g~~s~g~~iv~~-~~~l~~--------~~~~~l~Qefi~~-~~~~~k  210 (346)
T 2q7d_A          141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFN-QEGLNA--------IQPPCVVQNFINH-NAVLYK  210 (346)
T ss_dssp             EEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECS-GGGTTC----------CCEEEEECCCC-TTEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEC-CHHHHH--------CCHHHHHHHHHCC-CCEEEE
T ss_conf             421245453148999975064687489677479987664289835-103222--------0378785134148-977999


Q ss_pred             EEEECCEEEEEEEEECCCCCCCCCCCCCCCE-----------------------EEEECCHHHHHHHHHHHHHHHHCCCE
Q ss_conf             9998998863212204568600000014731-----------------------11007789999999999999984987
Q gi|254780696|r  213 ILLLNGKPVGAVNRIPSEVDNRSNIHAGGKA-----------------------ELTKLTKIDLDICKRIGESLRERGLF  269 (316)
Q Consensus       213 v~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~-----------------------~~~~lt~~~~~i~~~~~~~L~~~gl~  269 (316)
                      ++|+|+++.++++|..+.++|+.+.+.++..                       ...++.++.+++|.++.+.|   |+.
T Consensus       211 v~vvG~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~la~~a~~~l---Gl~  287 (346)
T 2q7d_A          211 VFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQAL---GVS  287 (346)
T ss_dssp             EEEETTEEEEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHH---CCC
T ss_pred             EEEECCEEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCC
T ss_conf             99989988999995268876200136676311445324223445556666655556670699999999999984---998


Q ss_pred             EEEEEEE-----C-CEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             9999511-----7-87889836883037889975199989999999988633
Q gi|254780696|r  270 FTGIDVI-----G-DYITEINVTSPTCIREIHRNGGENVASLFWDGIEKIKE  315 (316)
Q Consensus       270 ~~GiDii-----g-~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~~  315 (316)
                      ++|||+|     | .||+||| |.| |+.+++     |+...++++|.++.+
T Consensus       288 l~GvDii~~~~~g~~yViEVN-~~P-G~~gi~-----~~~~~~~~~l~~~~~  332 (346)
T 2q7d_A          288 LFGIDIIINNQTGQHAVIDIN-AFP-GYEGVS-----EFFTDLLNHIATVLQ  332 (346)
T ss_dssp             EEEEEEEECTTTCCEEEEEEE-ESC-CCTTCT-----THHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCCCCEEEEEEE-CCC-CCCCHH-----HHHHHHHHHHHHHHH
T ss_conf             899999998589988999970-898-745611-----499999999999983


No 7  
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A*
Probab=99.80  E-value=7.9e-17  Score=129.27  Aligned_cols=270  Identities=16%  Similarity=0.174  Sum_probs=171.1

Q ss_pred             CCCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf             9653318997099888-484764679999999988988999954124899989999999999807774126504644352
Q gi|254780696|r    1 MKKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID   79 (316)
Q Consensus         1 mkk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~   79 (316)
                      |+|  ||+++.-=.+. -+.+-+|--++.++.++.||+++.+++.+..+.                           .+.
T Consensus         1 m~~--ki~vl~GG~S~E~~iSl~Sg~~i~~aL~~~g~~v~~id~~~~~~~---------------------------~l~   51 (306)
T 1iow_A            1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT---------------------------QLK   51 (306)
T ss_dssp             CCC--EEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGG---------------------------GTT
T ss_pred             CCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH---------------------------HHH
T ss_conf             985--099993858731286999999999999886998999899855488---------------------------886


Q ss_pred             HHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHH-------
Q ss_conf             100636688328862247999999998623585-04117488752565034334543----044310003724-------
Q gi|254780696|r   80 LSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDIT-------  147 (316)
Q Consensus        80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~-------  147 (316)
                      -..+|++|.-.-=+...++ ..-.+||.+  +. ++-.+|.+...|.||..+-++..    ++|+..+....+       
T Consensus        52 ~~~~d~vf~~~hG~~~ed~-~~~~~le~~--~ipy~Gs~~~~~~l~~dK~~~K~~~~~~gi~tp~~~~~~~~~~~~~~~~  128 (306)
T 1iow_A           52 SMGFQKVFIALHGRGGEDG-TLQGMLELM--GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD  128 (306)
T ss_dssp             TTTEEEEEECCCSTTTSSS-HHHHHHHHH--TCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCT
T ss_pred             HCCCCEEEEECCCCCCCCH-HHHHHHHHC--CCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHH
T ss_conf             4489889993468854137-999999987--9638258889999885918789987742688898577730110223047


Q ss_pred             HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEE
Q ss_conf             5568888521-433111688543446874488711588999998400133400210534456826999989988632122
Q gi|254780696|r  148 QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNR  226 (316)
Q Consensus       148 ~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R  226 (316)
                      ......+..+ |+|+||.+|.+|.||.+++ +..++...++... .+...+++|+||+   +.++.|.++++.....+..
T Consensus       129 ~~~~~~~~l~~P~vvKP~~~g~s~Gi~~~~-~~~el~~~~~~~~-~~~~~~lvEefi~---G~E~~v~v~~~~~~~~~~i  203 (306)
T 1iow_A          129 KQLAEISALGLPVIVKPSREGSSVGMSKVV-AENALQDALRLAF-QHDEEVLIEKWLS---GPEFTVAILGEEILPSIRI  203 (306)
T ss_dssp             HHHHHHHTTCSSEEEEETTCCTTTTCEEES-SGGGHHHHHHHHT-TTCSEEEEEECCC---CCEEEEEEETTEECCCEEE
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHH-HCCHHHHHHHCCC---CCEEEEEEECCCCCCEEEE
T ss_conf             788887612998899828988888851258-9999999999866-3483566764567---9779999855767876999


Q ss_pred             ECCCCCCC--CCCCCCCCE--EEE----ECCHHHHHHHHHHHHHHHHCCC-EEEEEEEE----C-CEEEEEECCCCH---
Q ss_conf             04568600--000014731--110----0778999999999999998498-79999511----7-878898368830---
Q gi|254780696|r  227 IPSEVDNR--SNIHAGGKA--ELT----KLTKIDLDICKRIGESLRERGL-FFTGIDVI----G-DYITEINVTSPT---  289 (316)
Q Consensus       227 ~~~~~~~r--~Nl~~Gg~~--~~~----~lt~~~~~i~~~~~~~L~~~gl-~~~GiDii----g-~~i~EvNvtsP~---  289 (316)
                      .+.++-+.  .....+...  .+.    .+.++.+++|.++...|   |+ .++.||++    | .|++||| |.|+   
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~k~~~~l---g~~g~~riDf~~d~~g~~~~lEvN-~~Pglt~  279 (306)
T 1iow_A          204 QPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTL---GCKGWGRIDVMLDSDGQFYLLEAN-TSPGMTS  279 (306)
T ss_dssp             ECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHHHHHHHH---TCCSEEEEEEEECTTSCEEEEEEE-SSCCCST
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCCCEEEEEEE-CCCCCCC
T ss_conf             636764320001013433457777887677666899999999994---996479999999589989999864-9999887


Q ss_pred             --HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             --3788997519998999999998
Q gi|254780696|r  290 --CIREIHRNGGENVASLFWDGIE  311 (316)
Q Consensus       290 --g~~~~~~~~~~~i~~~i~d~ie  311 (316)
                        .+...-+.+|++.++.+-.-|+
T Consensus       280 ~s~~~~~~~~~G~~~~~li~~ii~  303 (306)
T 1iow_A          280 HSLVPMAARQAGMSFSQLVVRILE  303 (306)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             678999999829899999999998


No 8  
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A*
Probab=99.77  E-value=1e-16  Score=128.49  Aligned_cols=286  Identities=13%  Similarity=0.117  Sum_probs=163.9

Q ss_pred             CCCCCEEEEEECCHHHCCCCCC----CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE----
Q ss_conf             9653318997099888484764----67999999998898899995412489998999999999980777412650----
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKED----STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL----   72 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~D----TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~----   72 (316)
                      |.| +||++++=   ......+    |-.+++++..+.||+|+.+....    ++.-. ............+.+..    
T Consensus         1 m~k-~~I~vl~G---G~S~E~~iSl~Sg~~v~~aL~~~g~~v~~i~i~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~   71 (364)
T 2i87_A            1 MTK-ENICIVFG---GKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITN----DGDWR-KQNNITAEIKSTDELHLENGE   71 (364)
T ss_dssp             --C-EEEEEEEE---CSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECT----TCCEE-EECCCCSCCCSGGGSCGGGSE
T ss_pred             CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECC----CCCEE-ECCCCCHHHCCCCCCCCCCCC
T ss_conf             999-88999959---1875439999999999998777399799999848----98755-258741111157510237664


Q ss_pred             ----CC--CCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCE
Q ss_conf             ----46--44352100636688328862247999999998623585-04117488752565034334543----044310
Q gi|254780696|r   73 ----GE--EKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTL  141 (316)
Q Consensus        73 ----~~--~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~  141 (316)
                          ..  ........+|++|+-.-.+...++.- -.+||.+  ++ ++-+++.+...|.||..+-++.+    ++|+++
T Consensus        72 ~~~~~~~~~~~~~~~~~D~v~~~~hG~~gedg~~-q~~le~~--~ipy~G~~~~a~~i~~DK~~~k~~l~~~gIptp~~~  148 (364)
T 2i87_A           72 ALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTI-QGLFEVL--DVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYI  148 (364)
T ss_dssp             EECSSGGGGBCTTSSBCSEEEEECCCSSSCTTHH-HHHHHHH--TCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEE
T ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHH-HHHHHHC--CCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCEE
T ss_conf             1008888887752468888999267854326599-9999855--888347982454310038999999998699869866


Q ss_pred             EECCHHH-------HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
Q ss_conf             0037245-------568888521-43311168854344687448871158899999840013340021053445682699
Q gi|254780696|r  142 ISRDITQ-------ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRI  213 (316)
Q Consensus       142 vt~~~~~-------~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv  213 (316)
                      +....+.       +..+.++.+ |+|+||..|.+|.||.++. +..++...++...+ +...+++|+|++.   .++-+
T Consensus       149 ~~~~~~~~~~~~~~l~~~~~~~~~PvvvKP~~~g~S~Gv~~v~-~~~el~~~i~~~~~-~~~~~lvEe~i~g---~E~~~  223 (364)
T 2i87_A          149 SFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCN-NEAELKEGIKEAFQ-FDRKLVIEQGVNA---REIEV  223 (364)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEES-SHHHHHHHHHHHHT-TCSEEEEEECCCC---EEEEE
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHHH-CCHHHHHHCCCCC---EEEEE
T ss_conf             7613422200588999999762898699846777787616844-78999999999975-0845444304276---79999


Q ss_pred             EEE--CCEEE-EEEEEECCCCCCCCCCC--CCCC--EEEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE----C
Q ss_conf             998--99886-32122045686000000--1473--1110077----8999999999999998498-79999511----7
Q gi|254780696|r  214 LLL--NGKPV-GAVNRIPSEVDNRSNIH--AGGK--AELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI----G  277 (316)
Q Consensus       214 ~vi--~g~~v-~a~~R~~~~~~~r~Nl~--~Gg~--~~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii----g  277 (316)
                      .++  ++... .....++..+.+...-.  .+..  ..+..++    ++.+++|.++.+.|   |+ .+++||++    |
T Consensus       224 ~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~l---g~~g~~rvDf~~d~~g  300 (364)
T 2i87_A          224 AVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKAT---DCSGLVRADFFVTEDN  300 (364)
T ss_dssp             EEEESSSCEECCCEEECCSCCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHT---TCCEEEEEEEEECTTC
T ss_pred             EEEECCCCCEEECEEEEECCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCC
T ss_conf             8511356630001048721555554332034651350588889899999999999999980---9920899999995899


Q ss_pred             -CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHH
Q ss_conf             -878898368830-----378899751999899999
Q gi|254780696|r  278 -DYITEINVTSPT-----CIREIHRNGGENVASLFW  307 (316)
Q Consensus       278 -~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~  307 (316)
                       .|++||| |.||     .+...-+..|++..+.+-
T Consensus       301 ~~yvlEvN-~~Pglt~~S~~~~~~~~~G~s~~~li~  335 (364)
T 2i87_A          301 QIYINETN-AMPGFTAFSMYPKLWENMGLSYPELIT  335 (364)
T ss_dssp             CEEEEEEE-SSCCCSTTSHHHHHHHHTTCCHHHHHH
T ss_pred             CEEEEEEE-CCCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             79999861-989988555899999982999999999


No 9  
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.73  E-value=1.3e-15  Score=121.40  Aligned_cols=295  Identities=16%  Similarity=0.124  Sum_probs=170.9

Q ss_pred             CCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEH--HHEEE-ECCEEEE--------------EEEEEEEEC
Q ss_conf             53318997099888-484764679999999988988999954--12489-9989999--------------999999807
Q gi|254780696|r    3 KIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTP--DQLYM-RDSKIYA--------------NTQPLSLDE   64 (316)
Q Consensus         3 k~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~--~dL~~-~~g~v~A--------------~~~~i~i~~   64 (316)
                      |.|||++++==.+. -+++--|....+.+..++||+++.+..  +.-++ .+.....              ....+.+..
T Consensus         9 ~K~kI~vl~GG~S~E~eVSl~S~~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (373)
T 3lwb_A            9 RRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSGTELALPA   88 (373)
T ss_dssp             TCEEEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC--------------------------
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCHHHHHCCCCHHHHHHCCCCCEEECCC
T ss_conf             98779999686774069999999999997555088699999848997896477455541464101234226773331145


Q ss_pred             C---CCCEEEECCCCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----
Q ss_conf             7---7412650464435210063668832-8862247999999998623585-04117488752565034334543----
Q gi|254780696|r   65 K---KEQYYSLGEEKIIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----  135 (316)
Q Consensus        65 ~---~~~~f~~~~~~~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----  135 (316)
                      .   ...+..........+.++|++|+=. .++-....+-.  +||.+  +. ++-.++.+...|-||..+-++..    
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lHG~~GEdG~iQ~--lle~~--~ipytGs~~~asai~~dK~~tk~il~~~gI  164 (373)
T 3lwb_A           89 DPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG--LLELA--GVPYVGAGVLASAVGMDKEFTKKLLAADGL  164 (373)
T ss_dssp             --------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHH--HHHHH--TCCBSSSCHHHHHHHHBHHHHHHHHHHTTC
T ss_pred             CCCCCCCEEECCCCHHHHCCCCCEEEECCCCCCCCHHHHHH--HHHHC--CCCEECCCHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             65446604531542022204678899877687743469999--99986--999848299999977383989999997286


Q ss_pred             HCCCCEEECCHHH--HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEE
Q ss_conf             0443100037245--568888521-4331116885434468744887115889999984001334002105344568269
Q gi|254780696|r  136 LMPPTLISRDITQ--ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKR  212 (316)
Q Consensus       136 ~~P~T~vt~~~~~--~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~R  212 (316)
                      ++|++.+.++...  .....++.+ |+|+||..|.++.||.++... ..+...++.... +...+++|+||+   +.++-
T Consensus       165 ptp~~~~~~~~~~~~~~~~~~~l~~P~vVKP~~~GsS~GV~~v~~~-~el~~~~~~~~~-~~~~vlvE~~I~---g~E~~  239 (373)
T 3lwb_A          165 PVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSW-DQLPAAVARARR-HDPKVIVEAAIS---GRELE  239 (373)
T ss_dssp             CBCCEEEECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSG-GGHHHHHHHHHT-TCSSEEEEECCE---EEEEE
T ss_pred             CCCCCHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCH-HHHHHHHHHHHC-CCCCCCCEEEEC---CCEEE
T ss_conf             7553010010135799999886199889997888641797630668-888888886430-375324225761---50799


Q ss_pred             EEEEC---CEEEE----EEEEEC------CCCCCCCCCCCCCCE--EEEECCHH----HHHHHHHHHHHHHHCCC-EEEE
Q ss_conf             99989---98863----212204------568600000014731--11007789----99999999999998498-7999
Q gi|254780696|r  213 ILLLN---GKPVG----AVNRIP------SEVDNRSNIHAGGKA--ELTKLTKI----DLDICKRIGESLRERGL-FFTG  272 (316)
Q Consensus       213 v~vi~---g~~v~----a~~R~~------~~~~~r~Nl~~Gg~~--~~~~lt~~----~~~i~~~~~~~L~~~gl-~~~G  272 (316)
                      |-+++   |.+..    .+...+      .--|+.+....++..  .+..++++    .+++|.++.+.|   |+ .+++
T Consensus       240 v~vi~~~~g~~~~~~~~ei~~~~~~~~~~~~~dy~~ky~~~~~~~~~pa~~~~~~~~~i~~~A~~a~~aL---g~~g~~R  316 (373)
T 3lwb_A          240 CGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAI---DCRGLAR  316 (373)
T ss_dssp             EEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHT---TCCSEEE
T ss_pred             EEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEE
T ss_conf             9999615786210101027713312554332443330035775346787678899999999999999996---9940898


Q ss_pred             EEEE----CCEEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHH
Q ss_conf             9511----7878898368830-----378899751999899999999
Q gi|254780696|r  273 IDVI----GDYITEINVTSPT-----CIREIHRNGGENVASLFWDGI  310 (316)
Q Consensus       273 iDii----g~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~i  310 (316)
                      ||++    |.|++||| |.||     .+..+-++.|++..+.+-.-|
T Consensus       317 vDf~~~~~~~yvlEvN-t~PGlt~~S~~p~~a~~~G~s~~~li~~ii  362 (373)
T 3lwb_A          317 VDFFLTDDGPVINEIN-TMPGFTTISMYPRMWAASGVDYPTLLATMI  362 (373)
T ss_dssp             EEEEEETTEEEEEEEE-SSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEEC-CCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999907999871-999988567899999980999999999999


No 10 
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1}
Probab=99.71  E-value=3.8e-16  Score=124.79  Aligned_cols=271  Identities=11%  Similarity=0.072  Sum_probs=157.3

Q ss_pred             CEEEEEECCHHHCCCCCCC----HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEE-----------EEEEEEECCCCCE
Q ss_conf             3189970998884847646----799999999889889999541248999899999-----------9999980777412
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDS----TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYAN-----------TQPLSLDEKKEQY   69 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DT----T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~-----------~~~i~i~~~~~~~   69 (316)
                      ||||+++=   .-....|-    -.++..+..+||+.+-+++.+..++........           ...+....+.   
T Consensus        21 mkiaVl~G---G~S~Eh~vSl~Sa~~i~~aL~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   94 (367)
T 2pvp_A           21 MEFCVLFG---GASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKKLPPLILTHNG---   94 (367)
T ss_dssp             CCEEEEEE---CSSTTHHHHHHHHHHHHHHHGGGEEEEEEECTTCCEEECCGGGCSHHHHHTGGGSCCCCBEEETTE---
T ss_pred             CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHCCCC---
T ss_conf             88999908---585301879999999999874259789999389988983713214432344662320012210365---


Q ss_pred             EEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC
Q ss_conf             6504644352100636688328862247999999998623585-04117488752565034334543----044310003
Q gi|254780696|r   70 YSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR  144 (316)
Q Consensus        70 f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~  144 (316)
                      +...........++|++|.-...++..++. .-.+||.+  +. ++-.++.+...|.||..+-++..    ++|++.+.+
T Consensus        95 ~~~~~~~~~~~~~~d~vf~~~HG~~GEdG~-iq~~Le~~--gipy~Gs~~~as~i~~DK~~~k~~l~~~gI~tp~~~~~~  171 (367)
T 2pvp_A           95 LLKNSFLGAKIIELPLVINLVHGGDGEDGK-LASLLEFY--RIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLN  171 (367)
T ss_dssp             EEEEETTEEEEEECCSEEECCCSTTTTSSH-HHHHHHHT--TCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEEC
T ss_pred             CCCCCCCCCCEECCCEEEECCCCCCCCCHH-HHHHHHHC--CCCEECCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             210012466211268999967898764579-99999986--996778789999975595998888987299956311344


Q ss_pred             CHHHHHHH-HHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC--CEE
Q ss_conf             72455688-8852-1433111688543446874488711588999998400133400210534456826999989--988
Q gi|254780696|r  145 DITQITRF-YLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN--GKP  220 (316)
Q Consensus       145 ~~~~~~~f-~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~--g~~  220 (316)
                      +.+....+ ..+. .|+|+||..|.+|.||.++. +..++...++..... ...+++||||+...  ++.|.+++  +..
T Consensus       172 ~~~~~~~~~~~~~~~P~vvKP~~~gsS~GV~~v~-~~~el~~ai~~~~~~-~~~vlVEe~I~G~~--E~~v~v~~~~~~~  247 (367)
T 2pvp_A          172 EKNRANALDLMNFNFPFIVKPSNAGSSLGVNVVK-EEKELIYALDSAFEY-SKEVLIEPFIQGVK--EYNLAGCKIKKDF  247 (367)
T ss_dssp             TTTGGGHHHHCCSCSCEEEEESSCCTTTTCEEES-STTSHHHHHHHHTTT-CSCEEEEECCTTCE--EEEEEEEEETTEE
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE-CCHHHHHHHHHHHHH-CCCEEEEEECCCCE--EEEEEEECCCCCE
T ss_conf             4447889998765998899956645789878996-133179999998761-44135788627978--7478774268952


Q ss_pred             EEEEEEECCCCC---CCCCCCCCCCE--EEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----CCEEEEEECC
Q ss_conf             632122045686---00000014731--110077899----9999999999998498-79999511----7878898368
Q gi|254780696|r  221 VGAVNRIPSEVD---NRSNIHAGGKA--ELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI----GDYITEINVT  286 (316)
Q Consensus       221 v~a~~R~~~~~~---~r~Nl~~Gg~~--~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii----g~~i~EvNvt  286 (316)
                      ...+.+.+..++   +.+....++..  .+..++++.    +++|.++.+.|   |+ -+++||++    +.|++||| |
T Consensus       248 ~~~~i~~~~~~~~~dy~~k~~~~~~~~~~pa~l~~~~~~~i~~~a~k~~~~l---g~~G~~rvDf~~~~~~~yviEIN-t  323 (367)
T 2pvp_A          248 CFSYIEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDL---FDGAIIRCDFFVIENEVYLNEIN-P  323 (367)
T ss_dssp             EEEEEEETTTTEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTT---STTCCEEEEEEEETTEEEEEEEE-S
T ss_pred             EEEEEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCEEEEEEEC-C
T ss_conf             6578997145440353032244640424777799999999999999999996---99376999999999999999861-9


Q ss_pred             CCHHHHH
Q ss_conf             8303788
Q gi|254780696|r  287 SPTCIRE  293 (316)
Q Consensus       287 sP~g~~~  293 (316)
                      .| |+..
T Consensus       324 ~P-G~t~  329 (367)
T 2pvp_A          324 IP-GSLA  329 (367)
T ss_dssp             SC-GGGG
T ss_pred             CC-CCCC
T ss_conf             89-9973


No 11 
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV}
Probab=99.71  E-value=7.3e-15  Score=116.37  Aligned_cols=288  Identities=13%  Similarity=0.144  Sum_probs=168.3

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHH----HHHHHHHCCCEEEEEEH--HH-EEEECCEE-------------EEEEEEE
Q ss_conf             96533189970998884847646799----99999988988999954--12-48999899-------------9999999
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFA----IALEAQVRGYQIFHYTP--DQ-LYMRDSKI-------------YANTQPL   60 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~----Lm~eAq~RGheV~~~~~--~d-L~~~~g~v-------------~A~~~~i   60 (316)
                      |+| |||++++=   ...+..+-|+.    ++++..+.||++..+..  +. .++.....             ......+
T Consensus        20 M~k-~kv~vl~G---G~S~E~eiSl~Sa~~v~~~L~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (386)
T 3e5n_A           20 MRK-IRVGLIFG---GKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGV   95 (386)
T ss_dssp             -CC-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCE
T ss_pred             CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCHHHHHCCCCHHHHCCCCCCCCE
T ss_conf             876-77999979---78873899999999999975464798999998589987945724643325864440224467604


Q ss_pred             EEECCCC-CEEEECCCCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH--
Q ss_conf             9807774-12650464435210063668832-8862247999999998623585-04117488752565034334543--
Q gi|254780696|r   61 SLDEKKE-QYYSLGEEKIIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE--  135 (316)
Q Consensus        61 ~i~~~~~-~~f~~~~~~~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~--  135 (316)
                      .+..... .... .-.....+.++|++|+=. .++-....+.  .+||.+  +. ++-.+|.+...|-||..+-++.+  
T Consensus        96 ~~~~~~~~~~~~-~~~~~~~~~~~D~vf~~lhG~~GEdG~iq--~lle~~--gipytGs~~~asal~~DK~~~K~il~~~  170 (386)
T 3e5n_A           96 ALLPGAQQQQLR-PIQPEQALAQIDVVFPIVHGTLGEDGSLQ--GLLRMA--NLPFVGSGVLGSAVAMDKDMAKRVLRDA  170 (386)
T ss_dssp             EECTTCSSSCEE-ECC--CCCCCCSEEEEEECSHHHHSSHHH--HHHHHT--TCCBSSCCHHHHHHHHBHHHHHHHHHHT
T ss_pred             EECCCCCHHCCC-CCCCHHHCCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCCCCCCHHHHHHCCCCCCCHHHHHHC
T ss_conf             523652010012-34421112568889986778986583999--999974--9997998989996526866108899763


Q ss_pred             --HCCCCEEECCHHH----HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             --0443100037245----568888521-433111688543446874488711588999998400133400210534456
Q gi|254780696|r  136 --LMPPTLISRDITQ----ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRD  208 (316)
Q Consensus       136 --~~P~T~vt~~~~~----~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~  208 (316)
                        ++|+.+.....+.    +....++.+ |+|+||..|.++.||.+++.. .++...+.... .+...+++|+||+   +
T Consensus       171 gIptp~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~-~el~~~~~~a~-~~~~~vlvEefI~---G  245 (386)
T 3e5n_A          171 RLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTA-DAFAAALALAL-AYDHKVLVEAAVA---G  245 (386)
T ss_dssp             TCCBCCEEEEEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSG-GGHHHHHHHHT-TTCSEEEEEECCC---S
T ss_pred             CCCCCCCEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEECCH-HHHHHHHHHHH-CCCHHHCCCCCCC---E
T ss_conf             89875311100222035678888886189724345787668885265069-99999998621-2340001233112---0


Q ss_pred             CCEEEEEECCE---EEEEEEEECCCCC--CCCCCCCCCCE---EEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf             82699998998---8632122045686--00000014731---110077----8999999999999998498-7999951
Q gi|254780696|r  209 GDKRILLLNGK---PVGAVNRIPSEVD--NRSNIHAGGKA---ELTKLT----KIDLDICKRIGESLRERGL-FFTGIDV  275 (316)
Q Consensus       209 gD~Rv~vi~g~---~v~a~~R~~~~~~--~r~Nl~~Gg~~---~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDi  275 (316)
                      .++-|-++++.   +.....+++..+.  +......++..   .+..++    ++.+++|.++.+.|   |+ .++.||+
T Consensus       246 rEitV~v~g~~~~~~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~~~i~~~A~ka~~aL---g~~g~~RiDf  322 (386)
T 3e5n_A          246 REIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQAL---GCAGMARVDV  322 (386)
T ss_dssp             EEEEEEEECSSSCEEEEEEEECC-----------------CEESSCSSCHHHHHHHHHHHHHHHHHH---TCCSEEEEEE
T ss_pred             EEEEEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEE
T ss_conf             4999975354335434444376057653156764303773102664333899999999999999984---9982699999


Q ss_pred             E----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHH
Q ss_conf             1----7-878898368830-----37889975199989999
Q gi|254780696|r  276 I----G-DYITEINVTSPT-----CIREIHRNGGENVASLF  306 (316)
Q Consensus       276 i----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i  306 (316)
                      +    | .|++||| |.||     .+..+-+..|++..+.+
T Consensus       323 ~ld~dG~~y~lEvN-t~PGlt~~S~~p~~a~~~G~s~~~li  362 (386)
T 3e5n_A          323 FLCADGRIVINEVN-TLPGFTRISVYPKLWQASGLDYRGLI  362 (386)
T ss_dssp             EECTTCCEEEEEEE-SSCCCSTTCHHHHHHHTTTCCHHHHH
T ss_pred             EEECCCCEEEEEEE-CCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             99379958999810-97898865689999998099999999


No 12 
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica hm-1} PDB: 1z2o_X* 1z2p_X*
Probab=99.69  E-value=1.1e-15  Score=121.69  Aligned_cols=200  Identities=13%  Similarity=0.152  Sum_probs=131.9

Q ss_pred             HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH
Q ss_conf             0063668832886224799999999862358504117488752565034334543----044310003724556888852
Q gi|254780696|r   81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM  156 (316)
Q Consensus        81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~  156 (316)
                      ..||+++...-+..-...- .-..++. +..+++++++.+...+.+|..+..+..    ++|++++.++.+++...++..
T Consensus        55 ~~~d~~~~~lh~~~~~~~~-lq~y~~~-~~~~~v~d~~~~~~l~~~k~~~~~~l~~~~IpvP~~~~v~~~e~~~~~~~~~  132 (324)
T 1z2n_X           55 EPNAIITKRTHPVGKMADE-MRKYEKD-HPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSK  132 (324)
T ss_dssp             CCSEEEECCSCSSSHHHHH-HHHHHHH-CTTSEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHH-HHHHHHH-CCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf             8741999906798533339-9999998-8998886859999999969999999997798989979988889999999862


Q ss_pred             H---HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC---
Q ss_conf             1---4331116885434468744887115889999984001334002105344568269999899886321220456---
Q gi|254780696|r  157 K---DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE---  230 (316)
Q Consensus       157 ~---~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~---  230 (316)
                      +   |+|+||..|.+|.||+++..-.. ...+     .....+.++|+|+.. ..-.++++++|+++..+++|..+.   
T Consensus       133 ~l~~P~vvKP~~~~gs~Gvh~~~iv~~-~~~l-----~~~~~~~v~q~f~~~-~~vl~e~yv~G~ei~v~~r~s~~~~~~  205 (324)
T 1z2n_X          133 QLILPFIVKPENAQGTFNAHQMKIVLE-QEGI-----DDIHFPCLCQHYINH-NNKIVKVFCIGNTLKWQTRTSLPNVHR  205 (324)
T ss_dssp             CSCSSEEEEESBCSSSSGGGEEEEECS-GGGG-----TTCCSSEEEEECCCC-TTCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred             CCCCCEEEECCCCCCCCCEEEEEEHHH-HHHH-----HHHHHHHHHHHHCCC-CCEEEEEEEECCEEEEEEEECCCCCCC
T ss_conf             668973785165788765478743120-6665-----455799999875247-865999997187679999714887420


Q ss_pred             ----------------------------------CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             ----------------------------------8600000014731110077899999999999999849879999511
Q gi|254780696|r  231 ----------------------------------VDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI  276 (316)
Q Consensus       231 ----------------------------------~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii  276 (316)
                                                        +.++.+.+........+++++.+++|.++.+.|   |+.++|||+|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~iA~~i~~~L---Gl~l~gvDii  282 (324)
T 1z2n_X          206 CGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCAL---GVQLCGIDFI  282 (324)
T ss_dssp             SSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHH---TCSEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCEECCCHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCEEEEEEE
T ss_conf             2565321235566403247600001246201235543444577854567331499999999999995---9987847999


Q ss_pred             -----C-CEEEEEECCCCHHHHHH
Q ss_conf             -----7-87889836883037889
Q gi|254780696|r  277 -----G-DYITEINVTSPTCIREI  294 (316)
Q Consensus       277 -----g-~~i~EvNvtsP~g~~~~  294 (316)
                           | .||+||| +.| |+.++
T Consensus       283 ~~~~~g~~yViEVN-~~P-G~~g~  304 (324)
T 1z2n_X          283 KENEQGNPLVVDVN-VFP-SYGGK  304 (324)
T ss_dssp             CGGGCSSCEEEEEE-ESC-CTTSC
T ss_pred             EECCCCCEEEEEEE-CCC-CCCCC
T ss_conf             98599999999967-999-98787


No 13 
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.67  E-value=4.8e-14  Score=111.03  Aligned_cols=282  Identities=13%  Similarity=0.137  Sum_probs=157.8

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHH----HHHHHHHHCCCEEEE--EEHHHEEEECCEEEEEEEEEEEECCCCC--EEEE
Q ss_conf             9653318997099888484764679----999999988988999--9541248999899999999998077741--2650
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTF----AIALEAQVRGYQIFH--YTPDQLYMRDSKIYANTQPLSLDEKKEQ--YYSL   72 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~----~Lm~eAq~RGheV~~--~~~~dL~~~~g~v~A~~~~i~i~~~~~~--~f~~   72 (316)
                      |.| +||++++=   ...+..|-|+    ...++..+.||+++.  ++.+..++.       ....  ......  ....
T Consensus        35 m~k-~~I~vl~G---G~S~E~eiSl~Sg~~v~~aL~~~~y~v~~i~i~~~g~~~~-------~~~~--~~~~~~~~~~~~  101 (383)
T 3k3p_A           35 MSK-ETLVLLYG---GRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIK-------TQEF--DSQPSETDKLMT  101 (383)
T ss_dssp             --C-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEE-------EEEE--SSCCC--CCCCC
T ss_pred             CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEE-------CCCC--CCCCCCCCCCCC
T ss_conf             579-87999969---3676429999999999997536389799999858987785-------4334--555332110034


Q ss_pred             CC-----CC---CCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH-----HC
Q ss_conf             46-----44---35210063668832-8862247999999998623585-04117488752565034334543-----04
Q gi|254780696|r   73 GE-----EK---IIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE-----LM  137 (316)
Q Consensus        73 ~~-----~~---~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~-----~~  137 (316)
                      ..     ..   ..-...+|++|+-- .++- .++ ..-.+||.+  ++ ++-.++.+...|-||..+-++.+     +.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~vf~~lHG~~G-EdG-~iq~~le~~--gipy~Gs~~~asal~~DK~~tK~il~~~~~i~~  177 (383)
T 3k3p_A          102 NDTIIASQKIKPSDIYEEEAVVFPVLHGPMG-EDG-SIQGFLEVL--KMPYVGTNILSSSVAMDKITTNQVLESATTIPQ  177 (383)
T ss_dssp             TTSCCGGGEECGGGGCCTTCEEEEECCSTTT-SSS-HHHHHHHHT--TCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCB
T ss_pred             CCHHHHHCCCCCCCCCCCCCEEEECCCCCCC-CCH-HHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             3112210125731013567889988668665-588-999999984--998404718887767149999999987168887


Q ss_pred             CCCEEECCHH----HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEE
Q ss_conf             4310003724----5568888521-4331116885434468744887115889999984001334002105344568269
Q gi|254780696|r  138 PPTLISRDIT----QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKR  212 (316)
Q Consensus       138 P~T~vt~~~~----~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~R  212 (316)
                      |+..+..+..    .+..+.++.+ |+|+||..|.+|.||.++.. ..++...++.... +...+++|+||+   +.++-
T Consensus       178 ~~~~~~~~~~~~~~~~~~i~~~lg~PvivKP~~gGsS~Gv~~V~~-~~el~~a~~~a~~-~~~~vlvEefI~---g~E~t  252 (383)
T 3k3p_A          178 VAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAEN-RTDLKQAIALALK-YDSRVLIEQGVD---AREIE  252 (383)
T ss_dssp             CCEEEEETTSCHHHHHHHHHHHCCSSEEEEECC------CEEESS-HHHHHHHHHHHHH-HCSEEEEEECCC---SEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC-HHHHHHHHHHHHH-HHHHHHHHCEEC---CCCCE
T ss_conf             642123433204678999999738988997888677989722148-9999999998764-437878515651---33217


Q ss_pred             EEEECCE---EEEEEEEECCCCCCC--CCCCCCC--CEEEEECCHH----HHHHHHHHHHHHHHCCC-EEEEEEEE----
Q ss_conf             9998998---863212204568600--0000147--3111007789----99999999999998498-79999511----
Q gi|254780696|r  213 ILLLNGK---PVGAVNRIPSEVDNR--SNIHAGG--KAELTKLTKI----DLDICKRIGESLRERGL-FFTGIDVI----  276 (316)
Q Consensus       213 v~vi~g~---~v~a~~R~~~~~~~r--~Nl~~Gg--~~~~~~lt~~----~~~i~~~~~~~L~~~gl-~~~GiDii----  276 (316)
                      +-|+++.   ++.....++..+.|.  .....+.  ...+..++++    .+++|.++.+.|   |+ .++.||++    
T Consensus       253 v~v~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~pa~~~~~l~~~i~~~A~ka~~~L---g~~g~~RiDf~ld~d  329 (383)
T 3k3p_A          253 VGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTL---GCCGLSRCDFFLTED  329 (383)
T ss_dssp             EEEEESSSCEECCCEEEC-----------------CEESSCCCCHHHHHHHHHHHHHHHHHT---TCCEEEEEEEEECTT
T ss_pred             EEEEECCCCEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECC
T ss_conf             88872477505520010024665330013416874445776657999999999999999984---995279899999389


Q ss_pred             C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHHH
Q ss_conf             7-878898368830-----3788997519998999999
Q gi|254780696|r  277 G-DYITEINVTSPT-----CIREIHRNGGENVASLFWD  308 (316)
Q Consensus       277 g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d  308 (316)
                      | .|++||| |.||     .+...-+..|++.++.+-.
T Consensus       330 g~~y~lEvN-t~PGlt~~S~~p~~a~~~G~sy~~Ll~~  366 (383)
T 3k3p_A          330 GKVYLNELN-TMPGFTQWSMYPLLWENMGLSYSVLIEE  366 (383)
T ss_dssp             CCEEEEEEE-SSCCCC--CHHHHHHHHTTCCHHHHHHH
T ss_pred             CCEEEEEEE-CCCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf             968999861-9899886678999999809999999999


No 14 
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.66  E-value=5.4e-14  Score=110.68  Aligned_cols=274  Identities=13%  Similarity=0.137  Sum_probs=164.3

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHH----HHHHHHHHCC-CEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE---
Q ss_conf             9653318997099888484764679----9999999889-8899995412489998999999999980777412650---
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTF----AIALEAQVRG-YQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL---   72 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~----~Lm~eAq~RG-heV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~---   72 (316)
                      |+| +||++++=   ...+..|-|+    .+.++..++| |+|+.+....                    ...|+..   
T Consensus         1 M~K-~kIavl~G---G~S~E~eiSl~Sg~~v~~~L~~~~~y~v~~~~i~~--------------------~g~~~~~~~~   56 (377)
T 1ehi_A            1 MTK-KRVALIFG---GNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQ--------------------NGFFLDTESS   56 (377)
T ss_dssp             --C-EEEEEEEE---CSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECT--------------------TSCBCCHHHH
T ss_pred             CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC--------------------CCCEEECCCH
T ss_conf             998-88999969---48864599999999999974565592089999868--------------------9718705631


Q ss_pred             ---------------------------CCCCCCCHHHCCEEEEECCCCCCHH-HHHHHHHHHHHCCCC-EEECCHHHHHH
Q ss_conf             ---------------------------4644352100636688328862247-999999998623585-04117488752
Q gi|254780696|r   73 ---------------------------GEEKIIDLSQMDVILIRQDPPFNMH-YITSTYLLEKINPET-LIVNNPFWIRN  123 (316)
Q Consensus        73 ---------------------------~~~~~~~L~~fD~i~iR~dPp~d~~-yi~~~~~Le~~~~~~-~viN~p~~i~~  123 (316)
                                                 .-.......++|++|+=--=+.-.+ .+..  +||.+  ++ ++-.+|.+...
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~--~le~~--gIpytGs~~~~~al  132 (377)
T 1ehi_A           57 KKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQG--LFKLL--DKPYVGAPLRGHAV  132 (377)
T ss_dssp             HHHHTTCCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCSTTTSSSHHHH--HHHHT--TCCBSSCCHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH--HHHHC--CCCEECCHHHHHHH
T ss_conf             332203443322211012322346044445553046888899888898765729999--99982--99071770998876


Q ss_pred             CCCHHHHHHHHH----HCCCCEEECCHH----HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf             565034334543----044310003724----5568888521-4331116885434468744887115889999984001
Q gi|254780696|r  124 SPEKIFVTEFSE----LMPPTLISRDIT----QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYP  194 (316)
Q Consensus       124 ~~eKl~~~~~~~----~~P~T~vt~~~~----~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~  194 (316)
                      |.||..+-++.+    ++|+.++....+    .+..+.+..+ |+|+||..|.++.||.+++. ..++...++.. ..+.
T Consensus       133 ~~DK~~tk~~l~~~gIptp~~~~~~~~~~~~~~~~~~~~~l~~P~iVKP~~~GsS~GI~~v~~-~~el~~~~~~~-~~~~  210 (377)
T 1ehi_A          133 SFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN-AEEYTEALSDS-FQYD  210 (377)
T ss_dssp             HHSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECS-HHHHHHHHHHH-TTTC
T ss_pred             HCCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCC-HHHHHHHHHHH-HHHH
T ss_conf             325557777678601245512311511010445899988708968974788877646331478-99999999998-7640


Q ss_pred             CCCCEEECCCCCCCCCEEEEEECCE--EEEEE-----EEECCCC---CCCCCCCCCCCE---EEEECCHHH----HHHHH
Q ss_conf             3340021053445682699998998--86321-----2204568---600000014731---110077899----99999
Q gi|254780696|r  195 EPLMIQSYLPQIRDGDKRILLLNGK--PVGAV-----NRIPSEV---DNRSNIHAGGKA---ELTKLTKID----LDICK  257 (316)
Q Consensus       195 ~~ii~Qefi~~~~~gD~Rv~vi~g~--~v~a~-----~R~~~~~---~~r~Nl~~Gg~~---~~~~lt~~~----~~i~~  257 (316)
                      ..+++||||+..  .++.|-|++..  ++...     ...+...   |+.+-...|+..   .+..++++.    +++|.
T Consensus       211 ~~vlvEefi~G~--rE~tv~v~~~~~~~~~~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~pa~l~~~~~~~i~~~A~  288 (377)
T 1ehi_A          211 YKVLIEEAVNGA--RELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMAL  288 (377)
T ss_dssp             SCEEEEECCCCS--CEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHH
T ss_pred             HHCEEEEEECCC--EEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEECHHCCCCCCCCEECCCCCCCHHHHHHHHHHHH
T ss_conf             100045542386--799999845888733563026303325777545210003664441002576544899999999999


Q ss_pred             HHHHHHHHCCC-EEEEEEEE----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999998498-79999511----7-878898368830-----378899751999899999999
Q gi|254780696|r  258 RIGESLRERGL-FFTGIDVI----G-DYITEINVTSPT-----CIREIHRNGGENVASLFWDGI  310 (316)
Q Consensus       258 ~~~~~L~~~gl-~~~GiDii----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~i  310 (316)
                      ++.+.|   |+ .++.||++    | .|++||| |.||     .+...-+..|++..+.+..-|
T Consensus       289 ~a~~~L---g~~g~aRiDf~ld~~g~~y~lEvN-t~PGlt~~S~~p~~a~~~G~~~~~li~~ii  348 (377)
T 1ehi_A          289 DAYKVL---NLRGEARMDFLLDENNVPYLGEPN-TLPGFTNMSLFKRLWDYSDINNAKLVDMLI  348 (377)
T ss_dssp             HHHHHT---TCCEEEEEEEEECTTCCEEEEEEE-SSCCCSTTCGGGTGGGGGTCCHHHHHHHHH
T ss_pred             HHHHHH---CCCCEEEEEEEEECCCCEEEEEEC-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999996---999469999999689978999855-999988403899999980999999999999


No 15 
>1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.66  E-value=5.4e-14  Score=110.72  Aligned_cols=297  Identities=15%  Similarity=0.141  Sum_probs=166.7

Q ss_pred             CCCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEH--HHEEEE-CCE--EE--EEEEEEEEECCCC-CEEE
Q ss_conf             9653318997099888-484764679999999988988999954--124899-989--99--9999999807774-1265
Q gi|254780696|r    1 MKKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTP--DQLYMR-DSK--IY--ANTQPLSLDEKKE-QYYS   71 (316)
Q Consensus         1 mkk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~--~dL~~~-~g~--v~--A~~~~i~i~~~~~-~~f~   71 (316)
                      |+| |||++++-=.++ -+.+--|-..+..+..+.||++..+..  ...+.. ...  .+  .......+..+.. ...-
T Consensus         1 M~k-~ki~vl~GG~S~E~~vSl~Sg~~v~~aL~~~~y~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (343)
T 1e4e_A            1 MNR-IKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLL   79 (343)
T ss_dssp             -CC-EEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEE
T ss_pred             CCC-CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHHHCCCCCCEEECCCCCCCCHH
T ss_conf             998-7899996957842899999999999975162896999988699967855761555422566422335763322012


Q ss_pred             ECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCH
Q ss_conf             046443521006366883288622479999999986235850-4117488752565034334543----04431000372
Q gi|254780696|r   72 LGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDI  146 (316)
Q Consensus        72 ~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~  146 (316)
                      ........+..+|++|+=..=+.-.++. .-.+||.+  +.. +-.++.+...|.||..+-++.+    ++|++.+.+..
T Consensus        80 ~~~~~~~~~~~~D~vf~~lhG~~GEdg~-iq~~le~~--gipy~Gs~~~~s~l~~DK~~~k~il~~~gI~tp~~~~~~~~  156 (343)
T 1e4e_A           80 VKKNHEYEINHVDVAFSALHGKSGEDGS-IQGLFELS--GIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKD  156 (343)
T ss_dssp             EEETTEEEEEECSEEEECCCSTTTTSSH-HHHHHHHH--TCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTT
T ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCHH-HHHHHHHC--CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHCCCCH
T ss_conf             2023101345677899887787754609-99999986--99861685799998647066688999809998702001214


Q ss_pred             HHHHHHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCE---EEE
Q ss_conf             4556888852-143311168854344687448871158899999840013340021053445682699998998---863
Q gi|254780696|r  147 TQITRFYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGK---PVG  222 (316)
Q Consensus       147 ~~~~~f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~---~v~  222 (316)
                      +...  .+.. .|+|+||..+.++.||.+++. ..++...++... ++...+++|+||+   +.++.|-|++++   .+.
T Consensus       157 ~~~~--~~~~~~P~vVKP~~~gsS~Gv~~v~~-~~el~~~~~~~~-~~~~~vlvEefI~---G~E~~v~vl~~~~~~~~~  229 (343)
T 1e4e_A          157 DRPV--AATFTYPVFVKPARSGSSFGVKKVNS-ADELDYAIESAR-QYDSKILIEQAVS---GCEVGCAVLGNSAALVVG  229 (343)
T ss_dssp             CCCC--GGGSCSCEEEEESSCCTTTTCEEECS-GGGHHHHHHHHT-TTCSSEEEEECCC---SEEEEEEEEEETTCCEEC
T ss_pred             HHHH--HHHCCCCEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHH-HHHHHHHHHHCCC---CEEEEEEEECCCCCEEEE
T ss_conf             2888--87538985788667777778652465-788899999998-6324667874468---749999996588840676


Q ss_pred             EE-EEECCCCCCCCC--C--CCC--CC--EEEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----C-CEEEEE
Q ss_conf             21-220456860000--0--014--73--1110077899----9999999999998498-79999511----7-878898
Q gi|254780696|r  223 AV-NRIPSEVDNRSN--I--HAG--GK--AELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI----G-DYITEI  283 (316)
Q Consensus       223 a~-~R~~~~~~~r~N--l--~~G--g~--~~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii----g-~~i~Ev  283 (316)
                      .+ ...+..+.+...  .  ..+  .+  ..+..++++.    +++|.++.+.|   |+ .++.||++    | .|++||
T Consensus       230 ~i~ei~~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~~~~~~i~~~A~k~~~~l---g~~g~~RvDf~~d~~g~~yvlEv  306 (343)
T 1e4e_A          230 EVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTL---GCRGLARVDMFLQDNGRIVLNEV  306 (343)
T ss_dssp             CCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCSSCHHHHHHHHHHHHHHHHHT---TCEEEEEEEEEECTTCCEEEEEE
T ss_pred             ECCCCCCCCCCCEEHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCEEEEEE
T ss_conf             113313456642001110233577761111443234899999999999999983---99507998999948992999985


Q ss_pred             ECCCCH-----HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             368830-----37889975199989999999988
Q gi|254780696|r  284 NVTSPT-----CIREIHRNGGENVASLFWDGIEK  312 (316)
Q Consensus       284 NvtsP~-----g~~~~~~~~~~~i~~~i~d~ie~  312 (316)
                      | |.||     .+..+-++.|++..+.+-.-|+.
T Consensus       307 N-t~PGlt~~S~~p~~a~~~G~~~~~li~~ii~~  339 (343)
T 1e4e_A          307 N-TLPGFTSYSRYPRMMAAAGISLPELIDRLIVL  339 (343)
T ss_dssp             E-SSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             E-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             1-98998876789999998199999999999999


No 16 
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.66  E-value=1.4e-15  Score=121.18  Aligned_cols=191  Identities=23%  Similarity=0.238  Sum_probs=122.6

Q ss_pred             CHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH---HCCCCEEECCHHHHHHHHH
Q ss_conf             21006366883288622479999999986235850-4117488752565034334543---0443100037245568888
Q gi|254780696|r   79 DLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE---LMPPTLISRDITQITRFYL  154 (316)
Q Consensus        79 ~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~---~~P~T~vt~~~~~~~~f~~  154 (316)
                      .+.+.|++|+ ..|-.|.-....+.++|   .++. +.++|.+++.|.||+.+.++.+   .+|+|....          
T Consensus        66 ~~~~~d~~l~-IapE~d~~l~~~~~~~e---~~~~~lg~~~~ai~i~~DK~~t~~~L~~~~~~p~~~~~~----------  131 (305)
T 3df7_A           66 YLEKSDAFLI-IAPEDDFLLYTLTKKAE---KYCENLGSSSRAIAVTSDKWELYKKLRGEVQVPQTSLRP----------  131 (305)
T ss_dssp             HHTTCSEEEE-ECCCGGGHHHHHHHHHH---TTSEESSCCHHHHHHHTSHHHHHHHHTTTSCCCCEESSC----------
T ss_pred             HHHHCCEEEE-ECCCCHHHHHHHHHHHH---CCCCEECCCHHHHHHHHCHHHHHHHHHCCCCCCCCCHHH----------
T ss_conf             9987794399-87880366899999998---199398888999998879999999996579999713100----------


Q ss_pred             HHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEEEEEEEECCCC
Q ss_conf             5214331116885434468744887115889999984001334002105344568269999899---8863212204568
Q gi|254780696|r  155 EMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPVGAVNRIPSEV  231 (316)
Q Consensus       155 ~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v~a~~R~~~~~  231 (316)
                      ...|+|+||.+|+||+||+.+...+               +.+++||||+..   ...+.++.|   .+++...|...  
T Consensus       132 ~~~p~VvKP~~G~gg~gv~~~~~~~---------------~~~ivQeyi~G~---e~sv~~~~~~~~~~l~~~~~~~~--  191 (305)
T 3df7_A          132 LDCKFIIKPRTACAGEGIGFSDEVP---------------DGHIAQEFIEGI---NLSVSLAVGEDVKCLSVNEQIIN--  191 (305)
T ss_dssp             CSSSEEEEESSCC----CBCCSSCC---------------TTEEEEECCCSE---EEEEEEEESSSEEEEEEEEEEEE--
T ss_pred             CCCCEEEEECCCCCCCCEEEECCCC---------------CCCEEEEEECCC---EEEEEEEECCCEEEEEEEEEEEC--
T ss_conf             5985899718999986539860676---------------001001464772---06999990893699999877320--


Q ss_pred             CCCCCCCCCCCEEEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE---CCEEEEEECCCCH-HHHHHHHHCCCCH
Q ss_conf             600000014731110077----8999999999999998498-79999511---7878898368830-3788997519998
Q gi|254780696|r  232 DNRSNIHAGGKAELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI---GDYITEINVTSPT-CIREIHRNGGENV  302 (316)
Q Consensus       232 ~~r~Nl~~Gg~~~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii---g~~i~EvNvtsP~-g~~~~~~~~~~~i  302 (316)
                      .++.+   |+ ..+..++    ++..++|.++++.|.  |+ -++|||++   +.||+|||- -|| .+.++.+++|.|+
T Consensus       192 ~~~~~---g~-~~~~~~~~~~~~~i~~~a~k~~~~l~--~~~G~~~vD~i~~~~~~viEINP-R~t~s~~~l~~~~g~n~  264 (305)
T 3df7_A          192 NFRYA---GA-VVPARISDEVKREVVEEAVRAVECVE--GLNGYVGVDIVYSDQPYVIEINA-RLTTPVVAFSRAYGASV  264 (305)
T ss_dssp             TTEEE---EE-EESCCCCHHHHHHHHHHHHHHHTTST--TCCEEEEEEEEESSSEEEEEEES-SCCGGGGGHHHHHSCCH
T ss_pred             CEEEC---CC-CCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHHHHCCCH
T ss_conf             13355---75-10124556779999999999999826--98751799984589809999838-98855888999979799


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780696|r  303 ASLFWDGI  310 (316)
Q Consensus       303 ~~~i~d~i  310 (316)
                      ++.+++..
T Consensus       265 ~~l~~~~~  272 (305)
T 3df7_A          265 ADLLAGGE  272 (305)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHHH
T ss_conf             99999988


No 17 
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium}
Probab=99.65  E-value=2.5e-13  Score=106.28  Aligned_cols=285  Identities=11%  Similarity=0.143  Sum_probs=165.4

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCH----HHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCC---------
Q ss_conf             965331899709988848476467----9999999988988999954124899989999999999807774---------
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDST----FAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKE---------   67 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT----~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~---------   67 (316)
                      |.| |||++++=   ......+-|    ..+.++..+.||++..+...    .+|.-+. .-.........         
T Consensus         1 m~k-~ki~vl~G---G~S~E~evSl~Sg~~v~~~L~~~~~~v~~i~i~----~~g~w~~-~~~~~~~~~~~~~~~~~~~~   71 (364)
T 3i12_A            1 MAK-LRVGIVFG---GKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID----KAGQWHV-NDAENYLQNADDPAHIALRP   71 (364)
T ss_dssp             -CC-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC----TTSCEEE-ECSSSSBSSTTCTTTCCBCC
T ss_pred             CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHCHHCCEEEEEEEC----CCCCEEE-CCHHHHHHCCCCHHHHHCCC
T ss_conf             998-78999969---468738999999999999756547979999985----8998873-55576543157603320375


Q ss_pred             ---CEEE---------ECCCCCCCHHHCCEEEEECCCCCCHHH-HHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHH
Q ss_conf             ---1265---------046443521006366883288622479-99999998623585-041174887525650343345
Q gi|254780696|r   68 ---QYYS---------LGEEKIIDLSQMDVILIRQDPPFNMHY-ITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEF  133 (316)
Q Consensus        68 ---~~f~---------~~~~~~~~L~~fD~i~iR~dPp~d~~y-i~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~  133 (316)
                         ..-.         ........+..+|++|+=---+...++ +-  .+||.+  +. ++-.+|.+...|-||..+-++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~~hG~~gEdg~iq--~~Le~~--~ipytGs~~~as~l~~DK~~~k~~  147 (364)
T 3i12_A           72 SAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--GMLRVA--NLPFVGSDVLSSAACMDKDVAKRL  147 (364)
T ss_dssp             CSCBEEECTTCSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHH--HHHHHT--TCCBSSCCHHHHHHHHCHHHHHHH
T ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCCCCCCHHHHHHCCCHHHHHHH
T ss_conf             4210001554322110002244544314689984678887685999--999975--998628898999760990377999


Q ss_pred             HH----HCCCCEEECCHHH----HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf             43----0443100037245----568888521-43311168854344687448871158899999840013340021053
Q gi|254780696|r  134 SE----LMPPTLISRDITQ----ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLP  204 (316)
Q Consensus       134 ~~----~~P~T~vt~~~~~----~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~  204 (316)
                      ..    ++|+..+....+.    ...+....+ |+|+||..|.++.||.+++. ..++...++.... +...+++|+||+
T Consensus       148 l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~~~~P~ivKP~~~GsS~Gv~~v~~-~~el~~~~~~~~~-~~~~vlvEefI~  225 (364)
T 3i12_A          148 LRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVAN-EAQYQQAVALAFE-FDHKVVVEQGIK  225 (364)
T ss_dssp             HHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESS-HHHHHHHHHHHHH-HCSEEEEEECCC
T ss_pred             HHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEECC-HHHHHHHHHHHHH-HHHHCCHHCEEE
T ss_conf             99859986326874033113455788777617977887766788887524221-7779999999887-401001103572


Q ss_pred             CCCCCCEEEEEECC---EEEEEEEEECCCCCCCCCC--CCCC---CEEEEECCHHH----HHHHHHHHHHHHHCCC-EEE
Q ss_conf             44568269999899---8863212204568600000--0147---31110077899----9999999999998498-799
Q gi|254780696|r  205 QIRDGDKRILLLNG---KPVGAVNRIPSEVDNRSNI--HAGG---KAELTKLTKID----LDICKRIGESLRERGL-FFT  271 (316)
Q Consensus       205 ~~~~gD~Rv~vi~g---~~v~a~~R~~~~~~~r~Nl--~~Gg---~~~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~  271 (316)
                         +.++.|-++++   .++....+.+..+.+-.+.  ..+.   ...+..++++.    +++|.++.+.|   |+ .++
T Consensus       226 ---G~E~tV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~e~~~~i~~~A~~a~~~L---g~~g~~  299 (364)
T 3i12_A          226 ---GREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTL---GCAGMA  299 (364)
T ss_dssp             ---SEEEEEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHT---TCCEEE
T ss_pred             ---EEEEEEEECCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCEE
T ss_conf             ---27999851454465353114532466654400110366653345661004999999999999999971---998469


Q ss_pred             EEEEE----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHH
Q ss_conf             99511----7-878898368830-----378899751999899999
Q gi|254780696|r  272 GIDVI----G-DYITEINVTSPT-----CIREIHRNGGENVASLFW  307 (316)
Q Consensus       272 GiDii----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~  307 (316)
                      .||++    | .|++||| |.||     .+...-+..|++..+.+-
T Consensus       300 RvDf~~d~~g~~yvlEvN-t~PGlt~~S~~p~~~~~~G~s~~~li~  344 (364)
T 3i12_A          300 RVDVFLTADNEVVINEIN-TLPGFTNISMYPKLWQASGLGYTDLIS  344 (364)
T ss_dssp             EEEEEECTTCCEEEEEEE-SSCCCSTTCHHHHHHHTTTCCHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEE-CCCCCCCCCHHHHHHHHHCCCHHHHHH
T ss_conf             888999189968999865-899988666799999981989999999


No 18 
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15}
Probab=99.60  E-value=6.9e-15  Score=116.57  Aligned_cols=262  Identities=13%  Similarity=0.060  Sum_probs=149.1

Q ss_pred             HHHHHHHH--CCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf             99999998--8988999954124899989999999999807774126504644352100636688328862247999999
Q gi|254780696|r   26 AIALEAQV--RGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY  103 (316)
Q Consensus        26 ~Lm~eAq~--RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~  103 (316)
                      .|+++.++  ++++|+.++.+.......  ++....+--..+...|.+.- .+...-.+.|.|+...    |.+-.....
T Consensus        17 ~l~~~~~~~~~~~~vi~~D~~~~~~~~~--~~D~~~~~p~~~~~~~~~~l-~~i~~~~~id~iip~~----d~~~~~~a~   89 (331)
T 2pn1_A           17 KLVEYFVKEFKTGRVSTADCSPLASALY--MADQHYIVPKIDEVEYIDHL-LTLCQDEGVTALLTLI----DPELGLLAQ   89 (331)
T ss_dssp             HHHHHHHHHCCSSEEEEEESCTTCGGGG--GSSSEEECCCTTSTTHHHHH-HHHHHHHTCCEEEESS----HHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCHHHH--HCCEEEECCCCCCHHHHHHH-HHHHHHHCCCEEEECC----CHHHHHHHH
T ss_conf             9999999749999899988999985788--45988987998856799999-9999995999999788----657999999


Q ss_pred             HHHHHC-CCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEEC
Q ss_conf             998623-5850-4117488752565034334543----0443100037245568888521-4331116885434468744
Q gi|254780696|r  104 LLEKIN-PETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRIT  176 (316)
Q Consensus       104 ~Le~~~-~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~  176 (316)
                      ..+.++ .++. +.|++.+++.+.||..+.++..    ++|+|+...+..+......+.+ |+|+||..|+||+||+++.
T Consensus        90 ~~~~l~~~g~~v~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~e~~~~~~~~~~P~vvKP~~g~gs~gv~~i~  169 (331)
T 2pn1_A           90 ATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVE  169 (331)
T ss_dssp             THHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSHHHHHHHHHTTSSCSCEEEEESBC----------
T ss_pred             HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC
T ss_conf             99999978998987989999987499999999998699832221334658899988753897799868889888759974


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEE--ECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf             887115889999984001334002105344568269999--899886321220456860000001473111007789999
Q gi|254780696|r  177 LGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL--LNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLD  254 (316)
Q Consensus       177 ~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~v--i~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~  254 (316)
                      .. .++...++    . ..++++||||+.... .+-+++  .+|+++....|..  ..++...+   ........++..+
T Consensus       170 ~~-~el~~~~~----~-~~~~iiqe~i~G~e~-~v~~~~~~~~g~~~~~~~~~~--~~~~~g~~---~~~~~~~~~~i~~  237 (331)
T 2pn1_A          170 TV-EEVEQLFS----K-NTDLIVQELLVGQEL-GVDAYVDLISGKVTSIFIKEK--LTMRAGET---DKSRSVLRDDVFE  237 (331)
T ss_dssp             -------------------CEEEEECCCSEEE-EEEEEECTTTCCEEEEEEEEE--EEEETTEE---EEEEEECCHHHHH
T ss_pred             CH-HHHHHHHH----H-CCCHHHHHHHCCCEE-EEEEEEECCCCCEEEEEEEEE--CCCCCCCC---CCCCHHHHHHHHH
T ss_conf             79-99999987----2-612212454067332-799999857991654301451--13346787---6653011199999


Q ss_pred             HHHHHHHHHHHCCCE-EEEEEEE----CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             999999999984987-9999511----7878898368830378899751999899999999
Q gi|254780696|r  255 ICKRIGESLRERGLF-FTGIDVI----GDYITEINVTSPTCIREIHRNGGENVASLFWDGI  310 (316)
Q Consensus       255 i~~~~~~~L~~~gl~-~~GiDii----g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~i  310 (316)
                      ++.++++.|   |+. .+++|++    +.|++|||. =++|--.+...+|.|....+++.+
T Consensus       238 ~~~~i~~~l---~~~G~~~vd~~~~~~~~~viEiNp-R~~g~~~~~~~~G~n~~~~~~~~~  294 (331)
T 2pn1_A          238 LVEHVLDGS---GLVGPLDFDLFDVAGTLYLSEINP-RFGGGYPHAYECGVNFPAQLYRNL  294 (331)
T ss_dssp             HHHHHHTTT---CCCEEEEEEEEEETTEEEEEEEES-SCCTTHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHC---CCCCEEEEEEEEECCCEEEEEECC-CCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             999999982---972179999999899499999935-899843889984989999999997


No 19 
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp}
Probab=99.50  E-value=4.8e-11  Score=91.36  Aligned_cols=284  Identities=12%  Similarity=0.114  Sum_probs=155.7

Q ss_pred             CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHEEEE---CCEEEEEEEEEEEECCC-CCEEEECCC
Q ss_conf             6533189970998884847646799999999889889999--54124899---98999999999980777-412650464
Q gi|254780696|r    2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQLYMR---DSKIYANTQPLSLDEKK-EQYYSLGEE   75 (316)
Q Consensus         2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL~~~---~g~v~A~~~~i~i~~~~-~~~f~~~~~   75 (316)
                      .+|+||++. +       ..---++++++|++.|+++...  +++..+..   -.+.      +.+.... ..-| +.-.
T Consensus         4 ~~~kkiLia-n-------rGeiA~riiraarelG~~tV~V~s~~D~~a~~~~~ADe~------~~i~~~~~~~sY-ld~e   68 (446)
T 3ouz_A            4 MEIKSILIA-N-------RGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADAS------ICIGKARSSESY-LNIP   68 (446)
T ss_dssp             TCCCEEEEC-C-------CHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEE------EEEECCTTTTGG-GCHH
T ss_pred             CCCCEEEEE-C-------CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCEE------EECCCCCCCCCC-CCHH
T ss_conf             545389998-9-------869999999999986991999927564457667669999------985998732013-4999


Q ss_pred             CC---CCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCC--EEECC
Q ss_conf             43---52100636688328862247999999998623585-04117488752565034334543----04431--00037
Q gi|254780696|r   76 KI---IDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPT--LISRD  145 (316)
Q Consensus        76 ~~---~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T--~vt~~  145 (316)
                      ..   ..-...|+|++=-.  |-.+-......++.  .+. ++-.+|.+++.+.||..+-++.+    ++|+.  ...++
T Consensus        69 ~i~~ia~~~~~daI~pg~g--~lse~~~~a~~~~~--~gi~~iGps~~~i~~~~dK~~~k~~~~~~Gvpv~~~~~~~~~~  144 (446)
T 3ouz_A           69 AIIAAAEIAEADAIFPGYG--FLSENQNFVEICAK--HNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAG  144 (446)
T ss_dssp             HHHHHHHHHTCSEEECCSS--TTTTCHHHHHHHHH--TTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCS
T ss_pred             HHHHHHHHHCCCEEECCCC--HHHHCHHHHHHHHH--CCCEECCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             9999999979499986712--33247799999998--5996528989999975394989999998699660476756799


Q ss_pred             HHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEE-C-
Q ss_conf             245568888521-43311168854344687448871158899999-----840013340021053445682699998-9-
Q gi|254780696|r  146 ITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLL-N-  217 (316)
Q Consensus       146 ~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi-~-  217 (316)
                      .+++.++.++.| |+|+||.+|.||+|+.++. +..++...++..     ...+..++++++||+..+  .+-|-++ | 
T Consensus       145 ~ee~~~~a~~iGyPviVKps~ggGGrG~~iV~-~~~el~~~~~~a~~ea~~~~~~~~vlvEk~l~g~r--eiEVqvl~D~  221 (446)
T 3ouz_A          145 AEAAKKLAKEIGYPVILKAAAGGGGRGMRVVE-NEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPR--HIEVQVIGDS  221 (446)
T ss_dssp             HHHHHHHHHHHCSSEEEEETTCCTTCSEEEEC-SGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCE--EEEEEEEECT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EEEEEEEECC
T ss_conf             99999999974998999978889988158975-81676999999999999738998789998259988--9999999769


Q ss_pred             -CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEE-EEEEE----C-CEEEEEECCCCH
Q ss_conf             -988632122045686000000147311100778999-999999999998498799-99511----7-878898368830
Q gi|254780696|r  218 -GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFT-GIDVI----G-DYITEINVTSPT  289 (316)
Q Consensus       218 -g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~-GiDii----g-~~i~EvNvtsP~  289 (316)
                       |.+++...|.-+-.  +.+--....+-...|+++.+ ++...+.+..++.|+.-+ .++++    | .|++|||.=...
T Consensus       222 ~g~~i~~~~r~~s~~--~~~~~~ie~~P~~~l~~~~~~~l~~~a~~~~~alg~~g~~~vef~v~~~g~~y~iEvNpR~~~  299 (446)
T 3ouz_A          222 FGNVIHVGERDCSMQ--RRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQV  299 (446)
T ss_dssp             TSCEEEEEEEEEEEE--ETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCT
T ss_pred             CCCEEEEEEECCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf             999999854506667--777747999389879999999999999999997098576379998237885689983156678


Q ss_pred             HHHHHHHHCCCCHHHHHHHH
Q ss_conf             37889975199989999999
Q gi|254780696|r  290 CIREIHRNGGENVASLFWDG  309 (316)
Q Consensus       290 g~~~~~~~~~~~i~~~i~d~  309 (316)
                      -..-.+.++|+|+.+.-+..
T Consensus       300 ~~~~te~~tGvdlv~~~i~i  319 (446)
T 3ouz_A          300 EHCVSEMVSGIDIIEQMIKV  319 (446)
T ss_dssp             THHHHHHHHCCCHHHHHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHH
T ss_conf             73158888688689999998


No 20 
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A*
Probab=99.49  E-value=1.4e-12  Score=101.51  Aligned_cols=273  Identities=14%  Similarity=0.132  Sum_probs=156.6

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEEC--C-CCCCCH
Q ss_conf             3318997099888484764679999999988988999954124899989999999999807774126504--6-443521
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLG--E-EKIIDL   80 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~--~-~~~~~L   80 (316)
                      .|||+++..-  .      --..|++||++.|+++.+++++.=+-.  .-.|           ..++...  + .....+
T Consensus        19 ~~kIlIlG~G--q------lgr~la~aA~~lG~~v~v~d~~~~~pa--~~~a-----------d~~~~~~~~D~e~l~~~   77 (433)
T 2dwc_A           19 AQKILLLGSG--E------LGKEIAIEAQRLGVEVVAVDRYANAPA--MQVA-----------HRSYVGNMMDKDFLWSV   77 (433)
T ss_dssp             CCEEEEESCS--H------HHHHHHHHHHHTTCEEEEEESSTTCHH--HHHS-----------SEEEESCTTCHHHHHHH
T ss_pred             CCEEEEECCC--H------HHHHHHHHHHHCCCEEEEEECCCCCCH--HHHC-----------CEEEECCCCCHHHHHHH
T ss_conf             9899999988--9------999999999986998999979798867--7735-----------55897799999999999


Q ss_pred             ---HHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHH-HHHH-H---HCCCCEEECCHHHHHH
Q ss_conf             ---0063668832-8862247999999998623585041174887525650343-3454-3---0443100037245568
Q gi|254780696|r   81 ---SQMDVILIRQ-DPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFV-TEFS-E---LMPPTLISRDITQITR  151 (316)
Q Consensus        81 ---~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~-~~~~-~---~~P~T~vt~~~~~~~~  151 (316)
                         .+.|+|..=- ++|.+     .  +.+..+.++.+..+|.+...+.+|... -.|. +   ++|+....++.+++.+
T Consensus        78 a~~~~~d~v~~~~e~~~~~-----~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gIpt~~~~~v~s~~e~~~  150 (433)
T 2dwc_A           78 VEREKPDAIIPEIEAINLD-----A--LFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELYE  150 (433)
T ss_dssp             HHHHCCSEEEECSSCSCHH-----H--HHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHH
T ss_pred             HHHHCCCEEEECCCCCCHH-----H--HHHHHCCCCEECCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf             9982999999797866689-----9--99874268765189699998730099999999866999578521289999999


Q ss_pred             HHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---CCCCCCEEECCCCCCCC---CEEEEEECCEEEEEE
Q ss_conf             888521-43311168854344687448871158899999840---01334002105344568---269999899886321
Q gi|254780696|r  152 FYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK---YPEPLMIQSYLPQIRDG---DKRILLLNGKPVGAV  224 (316)
Q Consensus       152 f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~---~~~~ii~Qefi~~~~~g---D~Rv~vi~g~~v~a~  224 (316)
                      +.++.| |+|+||.+|++|+|++.+. +..++...++.+...   ....+++++|++.....   ..|-...+|++....
T Consensus       151 ~~~~ig~PvVvKp~~~~gg~Gv~~v~-~~~el~~a~~~a~~~~~~~~~~v~~e~~i~~~~e~~~~~~~~~~~~g~~~~~~  229 (433)
T 2dwc_A          151 ACEKIGYPCHTKAIMSSSGKGSYFVK-GPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTF  229 (433)
T ss_dssp             HHHHHCSSEEEEECCC------EEEC-SGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEE
T ss_pred             HHHHHCCCEEEEEEEECCCCCCEEEC-CHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEECCCCEEEEEEE
T ss_conf             99983884032113523698637977-98999999999997512466764310011456413799999469975899984


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEECCHHHHH----HHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHH--HHHH
Q ss_conf             220456860000001473111007789999----9999999999849879999511----78788983688303--7889
Q gi|254780696|r  225 NRIPSEVDNRSNIHAGGKAELTKLTKIDLD----ICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTC--IREI  294 (316)
Q Consensus       225 ~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~----i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g--~~~~  294 (316)
                      ..  ..+.+..+--..+...+..++++.++    ++.+++..|.-.|.  ..++++    +.|++|||. -|+|  +..+
T Consensus       230 ~~--~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~--~~ve~~~~~~~~~viEinp-R~~~~~~~~l  304 (433)
T 2dwc_A          230 PK--PVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDVLGGLGI--FGVEMFVKGDKVWANEVSP-RPHDTGMVTL  304 (433)
T ss_dssp             EC--CEEEEESSSSEEEEEESCCCCHHHHHHHHHHHHHHHHHHCSSEE--CEEEEEEETTEEEEEEEES-SCCGGGGGHH
T ss_pred             CC--CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEE--EEEEEEECCCCEEEEEEEE-CCCCCCEEEH
T ss_conf             33--23434313540155179303289999999999999997699726--4788775499268999983-4678750018


Q ss_pred             -HHHCCCCHHHHHHHHH
Q ss_conf             -9751999899999999
Q gi|254780696|r  295 -HRNGGENVASLFWDGI  310 (316)
Q Consensus       295 -~~~~~~~i~~~i~d~i  310 (316)
                       ...+|+|.....+...
T Consensus       305 ~~~~tgi~~~e~~ir~~  321 (433)
T 2dwc_A          305 ASHPPGFSEFALHLRAV  321 (433)
T ss_dssp             HHSCTTCSHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHH
T ss_conf             76550851999999986


No 21 
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.45  E-value=8.6e-12  Score=96.26  Aligned_cols=219  Identities=15%  Similarity=0.182  Sum_probs=139.5

Q ss_pred             CCHHHCCEEEEECCCCCCH-HHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHH
Q ss_conf             5210063668832886224-79999999986235850-4117488752565034334543----0443100037245568
Q gi|254780696|r   78 IDLSQMDVILIRQDPPFNM-HYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITR  151 (316)
Q Consensus        78 ~~L~~fD~i~iR~dPp~d~-~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~  151 (316)
                      +....+|+||+=..=.+-. ..+.  .+||.+  ++. +-.++.+...|.||..+-++.+    ++|+..+..+.+..  
T Consensus        72 ~~~~~~D~vf~~~hG~~gEdg~~q--~~le~~--gipy~Gs~~~~~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~~~--  145 (322)
T 2fb9_A           72 LSWERYDVVFPLLHGRFGEDGTVQ--GFLELL--GKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPP--  145 (322)
T ss_dssp             CCCTTCSEEEEECCSTTTTSSHHH--HHHHHH--TCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCC--
T ss_pred             HHHCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHH--
T ss_conf             763389899999878754488999--999983--99851488778877439999999999839985334332220235--


Q ss_pred             HHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEEEEEEEE
Q ss_conf             88852-14331116885434468744887115889999984001334002105344568269999899---886321220
Q gi|254780696|r  152 FYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPVGAVNRI  227 (316)
Q Consensus       152 f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v~a~~R~  227 (316)
                       ..+. .|+|+||.+|.++.||.++. +.+++...++... .+...+++++|+.  ...++.|-++++   ++.......
T Consensus       146 -~~~~~~P~ivKP~~~gsS~Gv~~v~-~~~el~~a~~~~~-~~~~~~~~e~~i~--~g~E~~v~v~~~~~~~~~~~~~~~  220 (322)
T 2fb9_A          146 -VVPFDPPFFVKPANTGSSVGISRVE-RFQDLEAALALAF-RYDEKAVVEKALS--PVRELEVGVLGNVFGEASPVGEVR  220 (322)
T ss_dssp             -CCCSCSCEEEEETTCCTTTTCEEES-SHHHHHHHHHHHT-TTCSEEEEEECCS--SCEEEEEEEESSSSCEEEEEEEEE
T ss_pred             -HHCCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHH-CCCCCCCCHHEEE--CCEEEEEEEEECCCCCEEEEEEEC
T ss_conf             -5325886899726888776866836-8999999987530-0222334200131--230899999723446220135531


Q ss_pred             CCCC--CCCCCCCCCCCE--EEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE----CCEEEEEECCCCH-----
Q ss_conf             4568--600000014731--110077----8999999999999998498-79999511----7878898368830-----
Q gi|254780696|r  228 PSEV--DNRSNIHAGGKA--ELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI----GDYITEINVTSPT-----  289 (316)
Q Consensus       228 ~~~~--~~r~Nl~~Gg~~--~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii----g~~i~EvNvtsP~-----  289 (316)
                      +..+  ++.+....+...  .+..++    ++.+++|.++.+.|   |+ .++.||++    ..|++||| |.||     
T Consensus       221 ~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~i~~~a~k~~~~L---g~~g~~rvDf~~~~g~~yvlEvN-t~PGlt~~s  296 (322)
T 2fb9_A          221 YEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVL---GVRGMARVDFFLAEGELYLNELN-TIPGFTPTS  296 (322)
T ss_dssp             EECCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHHHHHHHH---TCCSEEEEEEEEETTEEEEEEEE-SSCCCSSSC
T ss_pred             CCCCCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEEEECCEEEEEEEE-CCCCCCCCC
T ss_conf             34576424116823763114687414667568999999999981---99617999999999989999866-989988577


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             3788997519998999999998
Q gi|254780696|r  290 CIREIHRNGGENVASLFWDGIE  311 (316)
Q Consensus       290 g~~~~~~~~~~~i~~~i~d~ie  311 (316)
                      .+..+-++.|++.++.+-.-++
T Consensus       297 ~~p~~a~~~G~~~~~li~~ii~  318 (322)
T 2fb9_A          297 MYPRLFEAGGVAYPELLRRLVE  318 (322)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHH
T ss_conf             8999999809999999999999


No 22 
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.44  E-value=7.2e-12  Score=96.75  Aligned_cols=249  Identities=10%  Similarity=0.065  Sum_probs=142.7

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC
Q ss_conf             33189970998884847646799999999889889999541248999899999999998077741265046443521006
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM   83 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f   83 (316)
                      ||||+++..-        .-...|+++|++.|+++..++++.=.                  ....+.           -
T Consensus         1 MKkv~IlG~G--------QLgrm~a~aA~~lG~~v~~~~~d~~~------------------~a~~~~-----------~   43 (355)
T 3eth_A            1 MKQVCVLGNG--------QLGRMLRQAGEPLGIAVWPVGLDAEP------------------AAVPFQ-----------Q   43 (355)
T ss_dssp             CCEEEEESCS--------HHHHHHHHHHGGGTCEEEEECTTCCG------------------GGCCCT-----------T
T ss_pred             CCEEEEECCC--------HHHHHHHHHHHHCCCEEEEEECCCCC------------------CCHHHC-----------C
T ss_conf             9999998798--------99999999999789989998179996------------------533225-----------7


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-H
Q ss_conf             3668832886224799999999862358504117488752565034334543----0443100037245568888521-4
Q gi|254780696|r   84 DVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-D  158 (316)
Q Consensus        84 D~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~  158 (316)
                      |++..=. -.++..-      |+.+.....+.-+|.+++.+.||+..-+|.+    ++|+....++.+++.++.++.| |
T Consensus        44 dvvt~e~-E~i~~~a------l~~~~~~~~~~p~~~a~~i~~dK~~~K~~l~~~gIpt~~~~~v~s~~el~~~~~~iG~P  116 (355)
T 3eth_A           44 SVITAEI-ERWPETA------LTRQLARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGEL  116 (355)
T ss_dssp             SEEEESC-SCCCCCH------HHHHHHTCTTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCSE
T ss_pred             CEEEECC-CCCCHHH------HHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCC
T ss_conf             7999271-8998999------99996149988998799987463999999997698988733236899999988753982


Q ss_pred             HHHHCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC-CEEEEEEEEECCCCCCCCC
Q ss_conf             3311168-8543446874488711588999998400133400210534456826999989-9886321220456860000
Q gi|254780696|r  159 IIIKPLY-GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN-GKPVGAVNRIPSEVDNRSN  236 (316)
Q Consensus       159 vViKPl~-g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~-g~~v~a~~R~~~~~~~r~N  236 (316)
                      +|+||.. |++|+|++.++..+. ...     ......++++++|++  .+..+-+.++. +.......  |.......|
T Consensus       117 ~VlKp~~~g~~g~g~~vv~~~e~-~~~-----~~~~~~~~ivEe~i~--~~~E~sv~~~r~~~~~~~~~--~~~~~~~~~  186 (355)
T 3eth_A          117 AIVKRRTGGYDGRGQWRLRANET-EQL-----PAECYGECIVEQGIN--FSGEVSLVGARGFDGSTVFY--PLTHNLHQD  186 (355)
T ss_dssp             EEEEESSSCCTTTTEEEEETTCG-GGS-----CGGGTTTEEEEECCC--CSEEEEEEEEECTTSCEEEC--CCEEEEEET
T ss_pred             EEEEECCCCCCCCCCEECCCHHH-HHH-----HHHCCCCEEEEECCC--CCEEEEEEEEECCCCEEEEE--CCEEEECCC
T ss_conf             69998134546763154595889-999-----886478615652157--63788763133388509970--340200124


Q ss_pred             CCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCC--HHHHHHHHHCCCCHHHHH
Q ss_conf             00147311100778999----99999999999849879999511----787889836883--037889975199989999
Q gi|254780696|r  237 IHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFTGIDVI----GDYITEINVTSP--TCIREIHRNGGENVASLF  306 (316)
Q Consensus       237 l~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP--~g~~~~~~~~~~~i~~~i  306 (316)
                      -..-.+..+..++++..    +++.++++.|...|  ..+|+++    |.|++|+|. =|  +|..- ...++++.-+.-
T Consensus       187 ~~~~~~~~P~~i~~~~~~~~~~~a~~i~~~l~~~G--v~~vEf~v~~~~~~v~Einp-R~~~sg~~t-~~~~~~sqfe~~  262 (355)
T 3eth_A          187 GILRTSVAFPQANAQQQARAEEMLSAIMQELGYVG--VMAMECFVTPQGLLINELAP-RVHNSGHWT-QNGASISQFELH  262 (355)
T ss_dssp             TEEEEEEECSSCCHHHHHHHHHHHHHHHHHHTCCE--EEEEEEEEETTEEEEEEEES-SCCGGGTTH-HHHSSSCHHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEECCCEEEEEECC-CCCCCEEEE-ECCCCCCHHHHH
T ss_conf             54203302510106899999999999998564717--64889999789569999658-756754248-267888999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780696|r  307 WDGI  310 (316)
Q Consensus       307 ~d~i  310 (316)
                      +..+
T Consensus       263 ira~  266 (355)
T 3eth_A          263 LRAI  266 (355)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9998


No 23 
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.41  E-value=6.7e-11  Score=90.42  Aligned_cols=275  Identities=15%  Similarity=0.154  Sum_probs=152.4

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEH-HHE-EEECCEEEEEEEEEEEECCCCCEEEECCC---
Q ss_conf             9653318997099888484764679999999988988999954-124-89998999999999980777412650464---
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTP-DQL-YMRDSKIYANTQPLSLDEKKEQYYSLGEE---   75 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~-~dL-~~~~g~v~A~~~~i~i~~~~~~~f~~~~~---   75 (316)
                      +|+++||++. +       ..---++++++|++.|++.-.... .|- +..          +   ...+..|.++..   
T Consensus         3 ~~~~kkvLia-n-------rGeia~ri~ra~relGi~tVav~s~~D~~s~~----------~---~~AD~~~~i~~~~~~   61 (461)
T 2dzd_A            3 TRRIRKVLVA-N-------RGEIAIRVFRACTELGIRTVAIYSKEDVGSYH----------R---YKADEAYLVGEGKKP   61 (461)
T ss_dssp             CCCCSEEEEC-S-------CHHHHHHHHHHHHHHTCEEEEEECGGGTTCTH----------H---HHSSSEEECSTTSCT
T ss_pred             CCCCCEEEEE-C-------CCHHHHHHHHHHHHCCCEEEEEECHHHHCCCC----------H---HHCCEEEEECCCCCC
T ss_conf             8766689998-9-------72999999999998799699992847737899----------8---789999991898873


Q ss_pred             --CCCC---------HHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCC
Q ss_conf             --4352---------100636688328862247999999998623585-04117488752565034334543----0443
Q gi|254780696|r   76 --KIID---------LSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPP  139 (316)
Q Consensus        76 --~~~~---------L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~  139 (316)
                        .-++         -...|+|++=-.  |-.+-......++.  .+. ++-.+|.+|+.+.||...-++..    ++|+
T Consensus        62 ~~sYld~e~Ii~ia~~~~~daIhPgyG--flsEna~~a~~~~~--~gi~~iGps~~~i~~~gdK~~~r~~~~~~gvp~~p  137 (461)
T 2dzd_A           62 IEAYLDIEGIIEIAKAHDVDAIHPGYG--FLSENIQFAKRCRE--EGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIP  137 (461)
T ss_dssp             TGGGTCHHHHHHHHHHTTCCEEECCSS--SSTTCHHHHHHHHH--TTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCC
T ss_pred             CCCCCCHHHHHHHHHHHCCCEEECCHH--HHHHCHHHHHHHHH--CCCEEECCCHHHHHHCCCHHHHHHHHHHCCCCCCC
T ss_conf             322269999999999978699985876--76329899999997--69778579999998636989989999986998356


Q ss_pred             --CEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCCCCCE
Q ss_conf             --100037245568888521-4331116885434468744887115889999984-----00133400210534456826
Q gi|254780696|r  140 --TLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIRDGDK  211 (316)
Q Consensus       140 --T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~~gD~  211 (316)
                        ....++.+++.++.++.| |+++||.+|.||+|+..+. +..++...++...+     .+..++++.+||+...  .+
T Consensus       138 ~~~~~~~~~eea~~~a~~iGyPviiKps~ggGGrGm~vV~-~~~el~~a~~~a~~ea~~~fg~~~v~vEk~i~~~r--hi  214 (461)
T 2dzd_A          138 GSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVR-SKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPK--HI  214 (461)
T ss_dssp             BCSSCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEEC-CGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCE--EE
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EE
T ss_conf             6355689999999988751985897402478998725758-99999999999999888746998689998439974--99


Q ss_pred             EEEEE-C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE--CC--EE
Q ss_conf             99998-9--988632122045686000000147311100778999----99999999999849879999511--78--78
Q gi|254780696|r  212 RILLL-N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFTGIDVI--GD--YI  280 (316)
Q Consensus       212 Rv~vi-~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii--g~--~i  280 (316)
                      -|-++ |  |.+++...|.-+-+  |.+--.-..+-...|+++.+    +.+.++++.|.-.|  ...|.++  ++  |+
T Consensus       215 EVqvl~D~~g~~i~l~er~csiq--r~~qk~ie~aP~~~L~~~~~~~i~~~A~kia~~lgy~G--~~tVEflv~~~~~yf  290 (461)
T 2dzd_A          215 EVQILGDYEGNIVHLYERDCSVQ--RRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVN--AGTVEFLVSGDEFYF  290 (461)
T ss_dssp             EEEEEECTTCCEEEEEEEEEEEE--ETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCE--EEEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEECCCCCCC--CCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCEEEE
T ss_conf             99999838881999735346677--66886505579998989999999999999999859655--515899852866999


Q ss_pred             EEEECCCCHH-HHHHHHHCCCCHHHHHHH
Q ss_conf             8983688303-788997519998999999
Q gi|254780696|r  281 TEINVTSPTC-IREIHRNGGENVASLFWD  308 (316)
Q Consensus       281 ~EvNvtsP~g-~~~~~~~~~~~i~~~i~d  308 (316)
                      +|+| +=+.. -.=.+.+||+|+.+.-+.
T Consensus       291 lEvN-pR~qveh~vte~~tGidlv~~qi~  318 (461)
T 2dzd_A          291 IEVN-PRIQVEHTITEMITGIDIVQSQIL  318 (461)
T ss_dssp             EEEE-SSCCGGGHHHHHHHCCCHHHHHHH
T ss_pred             EEEE-CCCCCCCCEEEEECCCCHHHHHHH
T ss_conf             9863-232687651120108857999999


No 24 
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=99.38  E-value=5.6e-11  Score=90.92  Aligned_cols=284  Identities=13%  Similarity=0.111  Sum_probs=155.2

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE-EHHH-EEEE---CCEEEEEEEEEEEECCC---CCEEEE
Q ss_conf             96533189970998884847646799999999889889999-5412-4899---98999999999980777---412650
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY-TPDQ-LYMR---DSKIYANTQPLSLDEKK---EQYYSL   72 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~-~~~d-L~~~---~g~v~A~~~~i~i~~~~---~~~f~~   72 (316)
                      ||.++||++- +       ..---++++++|++.|++.-.. ...| .+..   -.+.      +.+....   ..+...
T Consensus         1 m~~~~~~lia-n-------rg~ia~r~~r~~~~~g~~~v~v~s~~d~~~~~~~~ad~~------~~~~~~~~~~~~yl~~   66 (1150)
T 3hbl_A            1 MKQIKKLLVA-N-------RGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADES------YLVGSDLGPAESYLNI   66 (1150)
T ss_dssp             --CCCEEEEC-C-------CHHHHHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEE------EECCTTSCTTGGGTCH
T ss_pred             CCCCCEEEEE-C-------CCHHHHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEE------EECCCCCCHHHCCCCH
T ss_conf             9978889998-9-------719999999999986993999818478468897887888------9828988633211599


Q ss_pred             CCC-CCCCHHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HC-CCC-EEE
Q ss_conf             464-43521006366883288-62247999999998623585041-17488752565034334543----04-431-000
Q gi|254780696|r   73 GEE-KIIDLSQMDVILIRQDP-PFNMHYITSTYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LM-PPT-LIS  143 (316)
Q Consensus        73 ~~~-~~~~L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~-P~T-~vt  143 (316)
                      ..- +...-...|+|++=-.- .-|..+.   ..++.  .|..+| -+|.+++.+.+|..+-++..    ++ |-+ -..
T Consensus        67 ~~i~~~a~~~~~~ai~pgygflsen~~~a---~~~~~--~gi~~iGp~~~~~~~~~~K~~~k~~~~~~gvp~~p~~~~~~  141 (1150)
T 3hbl_A           67 ERIIDVAKQANVDAIHPGYGFLSENEQFA---RRCAE--EGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPI  141 (1150)
T ss_dssp             HHHHHHHHHTTCSEEECTTTTSTTCHHHH---HHHHH--TTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCB
T ss_pred             HHHHHHHHHHCCCEEECCCCCCCCCHHHH---HHHHH--CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             99999999979299965844032499999---99998--79979896999999835999999999986998488968777


Q ss_pred             CCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCCCCCEEEEEE-
Q ss_conf             37245568888521-4331116885434468744887115889999984-----0013340021053445682699998-
Q gi|254780696|r  144 RDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIRDGDKRILLL-  216 (316)
Q Consensus       144 ~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~~gD~Rv~vi-  216 (316)
                      ++.+++.++.++.| |+|+||.+|.||+|+..+. +..++...++...+     -+...++++|||+..+  .+-|-++ 
T Consensus       142 ~~~~~a~~~a~~ig~PvvlK~~~g~gG~G~~~v~-~~~el~~a~~~~~~~~~~~f~~~~v~iE~~~~~~~--~iev~v~~  218 (1150)
T 3hbl_A          142 KSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVR-EESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPK--HIEVQVIG  218 (1150)
T ss_dssp             CSSSTTTTTGGGTCSSEEEECCC-------CEEC-CSSSCTHHHHSSSSSCC------CBEEECCCSSCE--EEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EEEEEEEE
T ss_conf             9999999999866998999988899978857889-99999999999999999736998689998338985--99999998


Q ss_pred             C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCE-EEEEEEE----CCEEEEEECCCC
Q ss_conf             9--988632122045686000000147311100778999-9999999999984987-9999511----787889836883
Q gi|254780696|r  217 N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLF-FTGIDVI----GDYITEINVTSP  288 (316)
Q Consensus       217 ~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~-~~GiDii----g~~i~EvNvtsP  288 (316)
                      |  |.+++...|..+-  -|.|--.+..+-...++++.+ +++..+.+..++.|.. ...|+++    +.|++|||. =+
T Consensus       219 d~~g~~i~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~vef~~~~~~~~~~E~n~-R~  295 (1150)
T 3hbl_A          219 DEHGNIVHLFERDCSV--QRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP-RV  295 (1150)
T ss_dssp             CSSSCEEEEEEEEEEE--ESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTEEEEEEEEC-SC
T ss_pred             ECCCCEEEEECCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEC-CC
T ss_conf             3899989963346766--66688725981799999999999999999999757954403799999899489999879-98


Q ss_pred             HH-HHHHHHHCCCCHHHHHHHH
Q ss_conf             03-7889975199989999999
Q gi|254780696|r  289 TC-IREIHRNGGENVASLFWDG  309 (316)
Q Consensus       289 ~g-~~~~~~~~~~~i~~~i~d~  309 (316)
                      .. -.-.+..+|+|+.+..+..
T Consensus       296 ~~e~~~te~~~g~dlv~~~i~~  317 (1150)
T 3hbl_A          296 QVEHTITEMVTGIDIVKTQILV  317 (1150)
T ss_dssp             CTTHHHHHHHHCCCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHH
T ss_conf             9876415655479869999986


No 25 
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.38  E-value=4.3e-11  Score=91.71  Aligned_cols=278  Identities=14%  Similarity=0.170  Sum_probs=157.3

Q ss_pred             CEEEEEECCHHHCCCCCCCHHHHHHHHHHCC--CEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH
Q ss_conf             3189970998884847646799999999889--88999954124899989999999999807774126504644352100
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRG--YQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ   82 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RG--heV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~   82 (316)
                      |||+++..-=        ---||+++.++-.  .++|+.. .+-.+..   .  +..+.++...  +-.+.  +...-.+
T Consensus         1 mkvliiG~Gg--------rEha~~~~l~~~~~~~~~~~~~-~N~g~~~---~--~~~~~~~~~d--~~~i~--~~~~~~~   62 (424)
T 2yw2_A            1 MKVLVVGNGG--------REHAIAWKVAQSPLVKELYVAK-GNAGIWE---I--AKRVDISPTD--VEKLA--EFAKNEG   62 (424)
T ss_dssp             CEEEEEESSH--------HHHHHHHHHTTCTTCSEEEEEE-CCTTGGG---T--SEEECSCTTC--HHHHH--HHHHHHT
T ss_pred             CEEEEECCCH--------HHHHHHHHHHHCCCCCEEEEEC-CCHHHHH---H--CCEEEECCCC--HHHHH--HHHHHHC
T ss_conf             9899989589--------9999999998589988899988-9888985---4--3008628899--99999--9999969


Q ss_pred             CCEEEEECCCCCCHHHHHH--HHHHHHHCCCCEE-ECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH
Q ss_conf             6366883288622479999--9999862358504-117488752565034334543----04431000372455688885
Q gi|254780696|r   83 MDVILIRQDPPFNMHYITS--TYLLEKINPETLI-VNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE  155 (316)
Q Consensus        83 fD~i~iR~dPp~d~~yi~~--~~~Le~~~~~~~v-iN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~  155 (316)
                      .|.|++=  |   ..++..  ...|+.  .+..+ -+++.+.+...+|.++-++.+    ++|+-.+.+|.+++.+|+++
T Consensus        63 id~vi~g--~---e~~l~~~~a~~l~~--~gi~~~gp~~~~~~~~~~K~~~k~~~~~~gipt~~~~~~~~~~ea~~~~~~  135 (424)
T 2yw2_A           63 VDFTIVG--P---EAPLVEGIVDEFEK--RGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEK  135 (424)
T ss_dssp             CSEEEEC--S---HHHHHTTHHHHHHH--TTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHH
T ss_pred             CCEEEEC--C---CHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             9999989--8---47888889999986--798313848999999868899999999849896344455619999999986


Q ss_pred             HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEEC
Q ss_conf             21-4331116885434468744887115889999984-----0013340021053445682699998998863-212204
Q gi|254780696|r  156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIP  228 (316)
Q Consensus       156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~  228 (316)
                      .+ |+|+||..++||+||..+.. ...+...++....     .....++++||+.... -..=+++-++.++- ...|-.
T Consensus       136 ~g~P~VIKp~~~~gGkGv~v~~~-~~e~~~al~~~~~~~~~~~~~~~vlvEe~l~G~e-~s~~~~~dg~~~~~~~~~~d~  213 (424)
T 2yw2_A          136 VGAPIVVKADGLAAGKGAVVCET-VEKAIETLDRFLNKKIFGKSSERVVIEEFLEGEE-ASYIVMINGDRYVPLPTSQDH  213 (424)
T ss_dssp             HCSSEEEEESSCCTTCSEEEESS-HHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEE-EEEEEEEETTEEEECCCBEEC
T ss_pred             CCCCEEEEECCCCCCCCCEEEEE-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-EEEEEEECCCCCCCCCHHHHE
T ss_conf             49978998578767777388850-2668999999753212126787389998753862-179999879942525118642


Q ss_pred             C-CCCCCCCCCCCCCEEEE---ECCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEECCCCH--H
Q ss_conf             5-68600000014731110---077899-----999999999999849879999---511----7878898368830--3
Q gi|254780696|r  229 S-EVDNRSNIHAGGKAELT---KLTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINVTSPT--C  290 (316)
Q Consensus       229 ~-~~~~r~Nl~~Gg~~~~~---~lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNvtsP~--g  290 (316)
                      + ..+-..--+.||...-.   .++++.     .++...+.+.|.+.|+.|.|+   +++    |.|++|+|.- |+  +
T Consensus       214 k~~~~~~~gp~tggmg~~~P~~~~~~~~~~~i~~~i~~~~~~al~~~g~~~~G~l~~~~~~t~~g~~viE~N~R-~gd~e  292 (424)
T 2yw2_A          214 KRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEGPKVLEFNVR-LGDPE  292 (424)
T ss_dssp             CEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTEEEEEEEESS-CCTTT
T ss_pred             ECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECC-CCCCC
T ss_conf             05346888997688658716812219999999999999999999861875035422200024688089998357-78762


Q ss_pred             HHHHHHHCCCCHHHHHHHHH
Q ss_conf             78899751999899999999
Q gi|254780696|r  291 IREIHRNGGENVASLFWDGI  310 (316)
Q Consensus       291 ~~~~~~~~~~~i~~~i~d~i  310 (316)
                      .+-+...++.|+...++...
T Consensus       293 ~~~~~~~~~~dl~~~~~~~a  312 (424)
T 2yw2_A          293 AQPILMRVKNDFLETLLNFY  312 (424)
T ss_dssp             HHHHHHTBCSCHHHHHHHHH
T ss_pred             EEEEEEEECCCHHHHHHHHH
T ss_conf             03463100885999999997


No 26 
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8}
Probab=99.25  E-value=4.5e-10  Score=84.97  Aligned_cols=278  Identities=14%  Similarity=0.140  Sum_probs=159.7

Q ss_pred             CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCC--EEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH
Q ss_conf             31899709988848476467999999998898--8999954124899989999999999807774126504644352100
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGY--QIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ   82 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGh--eV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~   82 (316)
                      |||+++..-=        ---+|++..++.+.  ++|++ |..-.+.   ..+.  .+.+..+.+.-.+.     ..-.+
T Consensus         1 MkVLviGsGg--------rEhAia~~l~~~~~~~~v~~~-pgN~g~~---~~~~--~~~~~~d~~~i~~~-----~~~~~   61 (417)
T 2ip4_A            1 MKVLVVGSGG--------REHALLWKAAQSPRVKRLYAA-PGNAGME---ALAE--LVPWNGDVEALADW-----ALAEG   61 (417)
T ss_dssp             CEEEEEESSH--------HHHHHHHHHHTCSSCCEEEEE-ECCTTGG---GTSE--ECCCCSCHHHHHHH-----HHHHT
T ss_pred             CEEEEECCCH--------HHHHHHHHHHHCCCCCEEEEE-CCCHHHH---HHCE--EECCCCCHHHHHHH-----HHHHC
T ss_conf             9899989789--------999999999729998989996-8976777---5174--21566899999999-----99859


Q ss_pred             CCEEEEECCCCCC-HHHHHHHHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH
Q ss_conf             6366883288622-47999999998623585041-17488752565034334543----044310003724556888852
Q gi|254780696|r   83 MDVILIRQDPPFN-MHYITSTYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM  156 (316)
Q Consensus        83 fD~i~iR~dPp~d-~~yi~~~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~  156 (316)
                      .|.+++  .|.-- ..++.  -.|+.  .+..|+ .+..+.+...+|.++-+|.+    ++|+-.+.+|.+++.+|++++
T Consensus        62 idlviv--GpE~pL~~gl~--d~l~~--~gi~v~Gp~~~~a~le~sK~~~k~~m~~~gIpt~~~~~~~~~~ea~~~~~~~  135 (417)
T 2ip4_A           62 IDLTLV--GPEAPLVEGIA--DAFQA--RGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEV  135 (417)
T ss_dssp             CCEEEE--CSSHHHHTTHH--HHHHH--HTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHH
T ss_pred             CCEEEE--CCCHHHHHHHH--HHHHH--CCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHC
T ss_conf             999998--97478887889--99985--7997658707788877678999999998198988854993589999999976


Q ss_pred             H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEECCCCCCCCCEEEEEE-CC-EEE--EEEEE--EC
Q ss_conf             1-43311168854344687448871158899999840-013340021053445682699998-99-886--32122--04
Q gi|254780696|r  157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK-YPEPLMIQSYLPQIRDGDKRILLL-NG-KPV--GAVNR--IP  228 (316)
Q Consensus       157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~-~~~~ii~Qefi~~~~~gD~Rv~vi-~g-~~v--~a~~R--~~  228 (316)
                      + |+|+||...++|+||..+. +...+...++..... ....++++|||..   -+.-++++ +| .++  ++...  ..
T Consensus       136 ~~P~ViKp~~~a~gkGv~i~~-~~~e~~~~~~~~~~~~~~~~VlIEE~l~G---~E~s~~~~~dg~~~~~l~~~qd~kr~  211 (417)
T 2ip4_A          136 GVPVVVKDSGLAAGKGVTVAF-DLHQAKQAVANILNRAEGGEVVVEEYLEG---EEATVLALTDGETILPLLPSQDHKRL  211 (417)
T ss_dssp             CSSEEEECTTSCSSTTCEEES-CHHHHHHHHHHHTTSSSCCCEEEEECCCS---CEEEEEEEESSSCEEECCCBEECCEE
T ss_pred             CCCEEEECCCCCCCCCEEEEC-CHHHHHHHHHHHHHHCCCCEEHHHHHHCC---CCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             998899727878987646640-07888888764320046860607656354---55258999637853346642254134


Q ss_pred             CCCCCCCCCCCCCCEEEEECCHHH-----HHHHHHHHHHHHHCCCEEEEEE---EE----CCEEEEEECCC--CHHHHHH
Q ss_conf             568600000014731110077899-----9999999999998498799995---11----78788983688--3037889
Q gi|254780696|r  229 SEVDNRSNIHAGGKAELTKLTKID-----LDICKRIGESLRERGLFFTGID---VI----GDYITEINVTS--PTCIREI  294 (316)
Q Consensus       229 ~~~~~r~Nl~~Gg~~~~~~lt~~~-----~~i~~~~~~~L~~~gl~~~GiD---ii----g~~i~EvNvts--P~g~~~~  294 (316)
                      .+||---|..--|...+..+++++     +++...+.+.|+..|+.|.|+=   ++    |+||+|.|+--  | ..+-+
T Consensus       212 ~~gd~GpntggmGa~~p~~~~~~~~~~~~~~i~~~~~~~l~~~g~~y~G~l~~glmlt~~gp~viE~N~R~Gdp-e~~~~  290 (417)
T 2ip4_A          212 LDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREGPKVLEFNARFGDP-EAQAL  290 (417)
T ss_dssp             ETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSCEEEEEEESSCCTT-HHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCC-CCCEE
T ss_conf             56999998898767788863047899999999999999999719974430010347845887799985135898-65346


Q ss_pred             HHHCCCCHHHHHHHHHHH
Q ss_conf             975199989999999988
Q gi|254780696|r  295 HRNGGENVASLFWDGIEK  312 (316)
Q Consensus       295 ~~~~~~~i~~~i~d~ie~  312 (316)
                      ....+.|+...+...+..
T Consensus       291 l~~l~~dl~~~~~~~~~g  308 (417)
T 2ip4_A          291 LPLLENDLVELALRVAEG  308 (417)
T ss_dssp             TTTBCSCHHHHHHHHHHT
T ss_pred             EECCCCCHHHHHHHHHCC
T ss_conf             522467658889986448


No 27 
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.25  E-value=9.5e-09  Score=76.30  Aligned_cols=266  Identities=14%  Similarity=0.119  Sum_probs=145.6

Q ss_pred             CHHHHHHHHHHCCCEEEEE-EHHH-EEEE---CCEEEEEEEEEEEECCCCCEEEECCC-CCCCHHHCCEEEEECCCCCCH
Q ss_conf             6799999999889889999-5412-4899---98999999999980777412650464-435210063668832886224
Q gi|254780696|r   23 STFAIALEAQVRGYQIFHY-TPDQ-LYMR---DSKIYANTQPLSLDEKKEQYYSLGEE-KIIDLSQMDVILIRQDPPFNM   96 (316)
Q Consensus        23 TT~~Lm~eAq~RGheV~~~-~~~d-L~~~---~g~v~A~~~~i~i~~~~~~~f~~~~~-~~~~L~~fD~i~iR~dPp~d~   96 (316)
                      --+.++++|++.|+++... ...| .+..   -.+++    .+........+.....- +.......|+|++--.  |-.
T Consensus        12 iA~riira~relGi~tVaV~s~~D~~a~~~~~ADe~~----~i~~~~~~~syLd~~~Ii~ia~~~~~DaIhPGyG--fls   85 (451)
T 2vpq_A           12 IAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAY----CVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYG--FLA   85 (451)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEE----EEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSS--TTT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEE----EECCCCCCCCCCCHHHHHHHHHHHCCCEEEECHH--HHC
T ss_conf             9999999999879959998483674688977889999----8189864234368999999999978299995866--634


Q ss_pred             HHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCCE-EECCHHHHHHHHHHHH-HHHHHCCCCCC
Q ss_conf             79999999986235850-4117488752565034334543----0-44310-0037245568888521-43311168854
Q gi|254780696|r   97 HYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPTL-ISRDITQITRFYLEMK-DIIIKPLYGNG  168 (316)
Q Consensus        97 ~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T~-vt~~~~~~~~f~~~~~-~vViKPl~g~~  168 (316)
                      +-......++.  .+.. +-=+|.+|+.+.||..+-+...    + +|.+. ..+|.+++.++.++.| ||++||.+|.|
T Consensus        86 En~~fa~~~~~--~gi~fIGPs~~~i~~~gdK~~ar~~a~~~gvPv~pg~~~~~~~~~ea~~~a~~IGyPviIKas~ggG  163 (451)
T 2vpq_A           86 ENADFAELCEA--CQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGG  163 (451)
T ss_dssp             TCHHHHHHHHT--TTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETTCCT
T ss_pred             CCHHHHHHHHH--CCCEECCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             46677899997--5984607979999986486899999998699918997777799999999998739969999887899


Q ss_pred             CCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEEEEEEE------ECCCCCCC
Q ss_conf             344687448871158899999-----8400133400210534456826999989---988632122------04568600
Q gi|254780696|r  169 GTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPVGAVNR------IPSEVDNR  234 (316)
Q Consensus       169 G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v~a~~R------~~~~~~~r  234 (316)
                      |+|+..+. +..++...++..     ...+...+++++||+..++  +-|-+++   |.+++-..|      ..++  ..
T Consensus       164 GrGmriV~-~~~el~~a~~~a~~ea~~~f~~~~v~iE~~i~~~rh--iEvqvl~D~~G~~i~l~erdCSiqrr~qk--~i  238 (451)
T 2vpq_A          164 GKGIRVAR-DEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRH--IEIQIVGDSYGNVIHLGERDCTIQRRMQK--LV  238 (451)
T ss_dssp             TCSEEEES-SHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEE--EEEEEEECTTSCEEEEEEEEEEEEETTEE--EE
T ss_pred             CCCCEEEC-CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE--EEEEEEEECCCCEEEEECCCCCCCCCCCC--EE
T ss_conf             88626875-824569999999999985479983899973599779--99999980899999994677677457886--69


Q ss_pred             CCCCCCCCEEEE-ECCHHHH-HHHHHHHHHHHHCCCEE-EEEEEE----CC--EEEEEECCCCHHH-HHHHHHCCCCHHH
Q ss_conf             000014731110-0778999-99999999999849879-999511----78--7889836883037-8899751999899
Q gi|254780696|r  235 SNIHAGGKAELT-KLTKIDL-DICKRIGESLRERGLFF-TGIDVI----GD--YITEINVTSPTCI-REIHRNGGENVAS  304 (316)
Q Consensus       235 ~Nl~~Gg~~~~~-~lt~~~~-~i~~~~~~~L~~~gl~~-~GiDii----g~--~i~EvNvtsP~g~-~~~~~~~~~~i~~  304 (316)
                             .-.|. .|+++.+ +++..+.+..+..|+.= +-|.++    ++  |++|+| |-+.-- .=-+..||+|+.+
T Consensus       239 -------EeaPs~~l~~~~r~~~~~~A~~~~~~vgy~g~gtvEfl~d~~~~~~yflEvN-~Rlqveh~vTe~vtGidlv~  310 (451)
T 2vpq_A          239 -------EEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMN-TRIQVEHPVTEMVTGIDLVK  310 (451)
T ss_dssp             -------EEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEE-CSCCTTHHHHHHHHCCCHHH
T ss_pred             -------EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECEEEEEEECCCCCEEEEEEC-CCCCCCEEEEEEEECCCHHH
T ss_conf             -------9889999999999999999999999829512120689995589958999723-77677511467231767899


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780696|r  305 LFWDG  309 (316)
Q Consensus       305 ~i~d~  309 (316)
                      .-+..
T Consensus       311 ~qi~i  315 (451)
T 2vpq_A          311 LQLQV  315 (451)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99998


No 28 
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.19  E-value=2.2e-09  Score=80.42  Aligned_cols=278  Identities=15%  Similarity=0.167  Sum_probs=158.8

Q ss_pred             CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCC--EEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf             65331899709988848476467999999998898--8999954124899989999999999807774126504644352
Q gi|254780696|r    2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGY--QIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID   79 (316)
Q Consensus         2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGh--eV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~   79 (316)
                      +++|||+++..-=.        --||.+...+-..  ++|++ |.+-.+.   -.+.  .+.++.  .++-.+.  +...
T Consensus        19 ~~~mkvLviGsGgr--------EhAia~~l~~s~~~~~v~~~-pgN~g~~---~~~~--~~~i~~--~d~~~i~--~~~~   80 (451)
T 2yrx_A           19 QSHMNVLVIGRGGR--------EHAIAWKAAQSPLVGKLYVA-PGNPGIA---DVAE--LVHIDE--LDIEALV--QFAK   80 (451)
T ss_dssp             CSSEEEEEEECSHH--------HHHHHHHHHTCTTEEEEEEE-ECCTTGG---GTSE--ECCCCT--TCHHHHH--HHHH
T ss_pred             HCCCEEEEECCCHH--------HHHHHHHHHHCCCCCEEEEE-CCCHHHH---HHCE--EEECCC--CCHHHHH--HHHH
T ss_conf             12978999897889--------99999999749898989997-8987998---5170--462486--8999999--9999


Q ss_pred             HHHCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHH
Q ss_conf             100636688328862247999999998623-585041-17488752565034334543----044310003724556888
Q gi|254780696|r   80 LSQMDVILIRQDPPFNMHYITSTYLLEKIN-PETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFY  153 (316)
Q Consensus        80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~-~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~  153 (316)
                      -.+.|.|++=  |   ..++.. .+-+.++ .+..|+ .+..+.+.-.+|.++-+|.+    ++|+..+.+|.+++.+|+
T Consensus        81 ~~~iD~vvvG--p---E~pL~~-gl~D~l~~~gi~v~Gp~~~aa~lE~sK~faK~~m~~~~IPta~~~~~~~~~ea~~~~  154 (451)
T 2yrx_A           81 QQAIDLTIVG--P---EAPLAS-GIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYI  154 (451)
T ss_dssp             HTTCSEEEEC--S---HHHHHT-THHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHH
T ss_pred             HHCCCEEEEC--C---CHHHHH-HHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHH
T ss_conf             8399999989--7---578888-999999506994007789999987577989999997297987838997899999998


Q ss_pred             HHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH-H----HCCCCCCEEECCCCCCCCCEEEEEE-CCEEEEEEE-
Q ss_conf             8521-433111688543446874488711588999998-4----0013340021053445682699998-998863212-
Q gi|254780696|r  154 LEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLF-E----KYPEPLMIQSYLPQIRDGDKRILLL-NGKPVGAVN-  225 (316)
Q Consensus       154 ~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~-~----~~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~a~~-  225 (316)
                      ++++ |+|+||..+++|+||..+. +...+...+.... .    .....++++||+...   ++-++.+ ||+-+..+. 
T Consensus       155 ~~~g~P~VIK~~glagGKGv~v~~-~~~e~~~a~~~~~~~~~~g~~~~~VvIEE~l~G~---E~S~~~~~dG~~~~~~~~  230 (451)
T 2yrx_A          155 EQKGAPIVIKADGLAAGKGVTVAQ-TVEEALAAAKAALVDGQFGTAGSQVVIEEYLEGE---EFSFMAFVNGEKVYPLAI  230 (451)
T ss_dssp             HHHCSSEEEEECC----CCEEEES-SHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCSE---EEEEEEEEETTEEEECCC
T ss_pred             HHCCCCEEEECCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC---CEEEEEEECCCEEEECHH
T ss_conf             604996699616455678730232-1566788888763023335678708833404887---226899943998883631


Q ss_pred             -----EECCCCCCCCCCCCCCCEEEEE---CCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEEC
Q ss_conf             -----2045686000000147311100---77899-----999999999999849879999---511----787889836
Q gi|254780696|r  226 -----RIPSEVDNRSNIHAGGKAELTK---LTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINV  285 (316)
Q Consensus       226 -----R~~~~~~~r~Nl~~Gg~~~~~~---lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNv  285 (316)
                           |. .+||.=  ...||...-.+   +++++     +++...+...|...|+.|.|+   +++    |.||+|+|+
T Consensus       231 ~~d~Kr~-~~gd~G--pnTGgMGa~~P~~~~~~~~~~~i~~~i~~~~~~~l~~~g~~y~Gvl~~~lmlt~~gp~viE~N~  307 (451)
T 2yrx_A          231 AQDHKRA-YDGDEG--PNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANGPKVIEFNA  307 (451)
T ss_dssp             BEECCEE-ETTTEE--EECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEES
T ss_pred             HHCEEEC-CCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEC
T ss_conf             3051221-268988--8768863006685201678888888899999999986599716787667776179716998422


Q ss_pred             C--CCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             8--8303788997519998999999998
Q gi|254780696|r  286 T--SPTCIREIHRNGGENVASLFWDGIE  311 (316)
Q Consensus       286 t--sP~g~~~~~~~~~~~i~~~i~d~ie  311 (316)
                      -  .| ..+-+...++.|+...+...+.
T Consensus       308 R~GDp-e~q~vl~~l~~dl~~~~~~~~~  334 (451)
T 2yrx_A          308 RFGDP-EAQVVLPRLKTDLVEAVLAVMD  334 (451)
T ss_dssp             SCCTT-HHHHHGGGBCSCHHHHHHHHHT
T ss_pred             CCCCC-EEEEEECCCCCCHHHHHHHHHC
T ss_conf             57997-0158850246889999999976


No 29 
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.19  E-value=3e-09  Score=79.63  Aligned_cols=267  Identities=13%  Similarity=0.099  Sum_probs=149.1

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEE---E--CCEEEEEEEEEEEECCCCCEEEECCCCCC
Q ss_conf             331899709988848476467999999998898899995412489---9--98999999999980777412650464435
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYM---R--DSKIYANTQPLSLDEKKEQYYSLGEEKII   78 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~---~--~g~v~A~~~~i~i~~~~~~~f~~~~~~~~   78 (316)
                      .+||+++..-        --..+|++||++.|+++.++++.+.--   .  +..+.+     . ..+.+       ....
T Consensus        24 ~k~IgIlG~G--------QLg~ml~~aA~~LGi~v~vld~~~~pa~~va~ad~~i~~-----~-~~D~~-------al~~   82 (403)
T 3k5i_A           24 SRKVGVLGGG--------QLGRMLVESANRLNIQVNVLDADNSPAKQISAHDGHVTG-----S-FKERE-------AVRQ   82 (403)
T ss_dssp             CCEEEEECCS--------HHHHHHHHHHHHHTCEEEEEESTTCTTGGGCCSSCCEES-----C-TTCHH-------HHHH
T ss_pred             CCEEEEECCC--------HHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCCEEEEC-----C-CCCHH-------HHHH
T ss_conf             9889998687--------999999999997899899996899986651005206977-----8-89999-------9999


Q ss_pred             CHHHCCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCC--EEECCHHHHHH
Q ss_conf             21006366883-2886224799999999862358504117488752565034334543----04431--00037245568
Q gi|254780696|r   79 DLSQMDVILIR-QDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPT--LISRDITQITR  151 (316)
Q Consensus        79 ~L~~fD~i~iR-~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T--~vt~~~~~~~~  151 (316)
                      -....|+|-.= -+-|++        .|+.++..+.|.=+|.+++.+.||+..=+|.+    ++|+-  .+.++.+++.+
T Consensus        83 ~a~~~DvIT~E~Eni~~~--------~l~~l~~~~~v~P~~~al~~~qdR~~eK~~l~~~gipt~~~~~~~~~s~~dl~~  154 (403)
T 3k5i_A           83 LAKTCDVVTAEIEHVDTY--------ALEEVASEVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAK  154 (403)
T ss_dssp             HHTTCSEEEESSSCSCHH--------HHHHHTTTSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHH
T ss_pred             HHHCCCEEEECCCCCCHH--------HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             986199999830307788--------999871888317998999988779999998886599988750336689999999


Q ss_pred             HHHHHH-HHHHHCC-CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCE-EEEEEEEEC
Q ss_conf             888521-4331116-8854344687448871158899999840013340021053445682699998998-863212204
Q gi|254780696|r  152 FYLEMK-DIIIKPL-YGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGK-PVGAVNRIP  228 (316)
Q Consensus       152 f~~~~~-~vViKPl-~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~-~v~a~~R~~  228 (316)
                      +.++.| |+|+||. .|++|+|.++++.. .++...+..   ....++++.+|++  ....+-++++.+. -+..+.+  
T Consensus       155 ~~~~iG~P~vlK~~~~Gydg~gq~~i~~~-~d~~~~~~~---~~~~~~i~E~~v~--~~~Eisviv~r~~~~i~~~p~--  226 (403)
T 3k5i_A          155 VGEQLGYPLMLKSKTMAYDGRGNFRVNSQ-DDIPEALEA---LKDRPLYAEKWAY--FKMELAVIVVKTKDEVLSYPT--  226 (403)
T ss_dssp             HHHHHCSSEEEEESSSCCTTTTEEEECST-TSHHHHHHH---TTTSCEEEEECCC--EEEEEEEEEEECSSCEEECCC--
T ss_pred             HHHHCCCCEEEEECEECCCCCCCEECCCH-HHHHHHHHH---CCCCEEEEEEEEE--EEEEEEEEEEECCCCEEEECC--
T ss_conf             99971898899964056688773301422-457888751---3785489875665--776543789861586599478--


Q ss_pred             CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHC--CCEEEEEEEE----CC-EEEEEECCCCH--HHHHHHHHCC
Q ss_conf             56860000001473111007789999999999999984--9879999511----78-78898368830--3788997519
Q gi|254780696|r  229 SEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRER--GLFFTGIDVI----GD-YITEINVTSPT--CIREIHRNGG  299 (316)
Q Consensus       229 ~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~--gl~~~GiDii----g~-~i~EvNvtsP~--g~~~~~~~~~  299 (316)
                      .++..+.+.-.-..+-+..++++..+-+.+++..+.+.  +.-..+|.+.    |. |+.|+| +-|.  |..- ...++
T Consensus       227 ~e~~~~~~~~~~~~~p~~~i~~~~~~~a~~~a~~i~~~l~~vGv~~vEff~~~~g~~~vnEia-PR~hnsgh~T-~~~~~  304 (403)
T 3k5i_A          227 VETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIA-SRIHNSGHYT-IEGCA  304 (403)
T ss_dssp             EEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEE-SSCCGGGTTH-HHHBS
T ss_pred             CEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEC-CCCCCCCCEE-ECCCC
T ss_conf             460404897058985797676689999999999999854788637999999469809999924-8877773466-43654


Q ss_pred             CCHHHHHHHH
Q ss_conf             9989999999
Q gi|254780696|r  300 ENVASLFWDG  309 (316)
Q Consensus       300 ~~i~~~i~d~  309 (316)
                      ++.=+.-+..
T Consensus       305 ~sqfe~hiRa  314 (403)
T 3k5i_A          305 LSQFDAHLRA  314 (403)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
T ss_conf             6799999999


No 30 
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.19  E-value=5e-11  Score=91.23  Aligned_cols=240  Identities=15%  Similarity=0.203  Sum_probs=123.5

Q ss_pred             CCCCHHHHHHHHHHCCCEEEEEE-HHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHH
Q ss_conf             76467999999998898899995-41248999899999999998077741265046443521006366883288622479
Q gi|254780696|r   20 KEDSTFAIALEAQVRGYQIFHYT-PDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHY   98 (316)
Q Consensus        20 ~~DTT~~Lm~eAq~RGheV~~~~-~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~y   98 (316)
                      ...|++.++++|++.|+++-.+. .++-..     ++.      .....+.|-........+.+.|.|+.   |.++..-
T Consensus         9 ~s~sal~i~~aAkelG~~Ti~v~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~d~vi~---~~~~~~~   74 (334)
T 2r85_A            9 ASHSALQILKGAKDEGFETIAFGSSKVKPL-----YTK------YFPVADYFIEEKYPEEELLNLNAVVV---PTGSFVA   74 (334)
T ss_dssp             SSTTHHHHHHHHHHTTCCEEEESCGGGHHH-----HHT------TSCCCSEEECSSCCHHHHHHTTEEEC---CCTTHHH
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCC------CCHHHHHHCCCCHHHHHHHCCCEEEE---CCCCHHH
T ss_conf             335999999999987997999977997643-----557------30336887186168999618993895---8988189


Q ss_pred             HHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEE
Q ss_conf             9999999862358504117488752565034334543----0443100037245568888521-4331116885434468
Q gi|254780696|r   99 ITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVF  173 (316)
Q Consensus        99 i~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~  173 (316)
                      ......++..  +..++=+|.+++.+.||...-++.+    ++|+++         ++.++.+ |+|+||.+|+||+|++
T Consensus        75 ~~~a~~~e~~--g~~~~gs~~~l~~~~dK~~~k~~l~~~Gip~p~~~---------~~~~~ig~PvivKp~~g~gg~G~~  143 (334)
T 2r85_A           75 HLGIELVENM--KVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVY---------EDPDDIEKPVIVKPHGAKGGKGYF  143 (334)
T ss_dssp             HHCHHHHHTC--CSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCBC---------SCGGGCCSCEEEEECC----TTCE
T ss_pred             HHHHHHHHHC--CCCEECCHHHHHHHHCHHHHHHHHHHCCCCCCHHH---------HHHHHCCCCEEEEECCCCCCCEEE
T ss_conf             9999999977--99664889999986599999999998597997467---------648766982588554789993379


Q ss_pred             EECCCCCCHHHHHHHHHHH----CCCCCCEEECCCCCC--------CCCEEE--EEE-CCEEE--EEEEEECCCCCCCCC
Q ss_conf             7448871158899999840----013340021053445--------682699--998-99886--321220456860000
Q gi|254780696|r  174 RITLGDRNFSSLIEMLFEK----YPEPLMIQSYLPQIR--------DGDKRI--LLL-NGKPV--GAVNRIPSEVDNRSN  236 (316)
Q Consensus       174 ~i~~~~~~~~~~~e~~~~~----~~~~ii~Qefi~~~~--------~gD~Rv--~vi-~g~~v--~a~~R~~~~~~~r~N  236 (316)
                      ++. +..++...++.....    ....+++|||++...        .++..+  +.. +|..+  ....|.+..+.-...
T Consensus       144 iv~-~~~el~~~~~~~~~~~~~~~~~~~iiee~i~G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (334)
T 2r85_A          144 LAK-DPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFD  222 (334)
T ss_dssp             EES-SHHHHHHHHHHHHCCCSGGGCCSEEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSC
T ss_pred             EEC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCEEEECCEEEECCCEEEECE
T ss_conf             977-9999999999998765427888779999835846876653256530699999648975782545434620221111


Q ss_pred             CCC-----CCCE--EEEECCHHHHHHHHHHHHHHHHC-C--CEEEEEEEE----CC-EEEEEEC
Q ss_conf             001-----4731--11007789999999999999984-9--879999511----78-7889836
Q gi|254780696|r  237 IHA-----GGKA--ELTKLTKIDLDICKRIGESLRER-G--LFFTGIDVI----GD-YITEINV  285 (316)
Q Consensus       237 l~~-----Gg~~--~~~~lt~~~~~i~~~~~~~L~~~-g--l~~~GiDii----g~-~i~EvNv  285 (316)
                      ...     |.-+  .+.++.++.++++.++++.+... |  .-..+++++    |+ |++|||.
T Consensus       223 ~~~~~~~~~~~p~~l~~~~~~~~~~~a~~i~~al~~~~~~~~G~~~vE~~v~~dg~~~viEinp  286 (334)
T 2r85_A          223 MDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISA  286 (334)
T ss_dssp             CCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEEEEEC
T ss_pred             EECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEC
T ss_conf             5517862475699899999999999999999999886287536469999994899899999879


No 31 
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.15  E-value=1.1e-08  Score=75.86  Aligned_cols=193  Identities=16%  Similarity=0.138  Sum_probs=116.6

Q ss_pred             CCCEEE-CCHHHHHHCCCHHHHHHHHH----HC-CCC-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf             585041-17488752565034334543----04-431-00037245568888521-433111688543446874488711
Q gi|254780696|r  110 PETLIV-NNPFWIRNSPEKIFVTEFSE----LM-PPT-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRN  181 (316)
Q Consensus       110 ~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~-P~T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~  181 (316)
                      .|..+| -+|++|+.+.||..+-++.+    ++ |-+ -...|.+++.++.++.| |+++||.+|.||+|+..+. +..+
T Consensus        97 ~gi~fiGPs~~~i~~~gdK~~ar~~a~~~GvP~~pg~~~~~~s~~ea~~~a~~iGyPviiKa~~ggGGrGmriv~-~~~e  175 (451)
T 1ulz_A           97 AGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICR-NEEE  175 (451)
T ss_dssp             TTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEES-SHHH
T ss_pred             CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC-CHHH
T ss_conf             797473798999998369999999999869982899776669999999999864997999987689988637868-9899


Q ss_pred             HHHHHHHHH-----HHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf             588999998-----40013340021053445682699998---9988632122045686000000147311100778999
Q gi|254780696|r  182 FSSLIEMLF-----EKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL  253 (316)
Q Consensus       182 ~~~~~e~~~-----~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~  253 (316)
                      +...++...     ..+...+++.+||+...+  +-|-++   .|.+++...|.-+-.  |.|--.=..+-+..|+++.+
T Consensus       176 l~~~~~~a~~ea~~~fg~~~v~iEk~i~~~rh--iEvqvl~D~~Gnvi~l~erdcsiq--rr~qk~ieeaPa~~l~~~~r  251 (451)
T 1ulz_A          176 LVKNYEQASREAEKAFGRGDLLLEKFIENPKH--IEYQVLGDKHGNVIHLGERDCSIQ--RRNQKLVEIAPSLILTPEKR  251 (451)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCEEEEECCCSCEE--EEEEEEECTTSCEEEEEEEEEEEE--ETTEEEEEEESCSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE--EEEEEEEECCCCEEEEEECCCCCC--CCCCCCCEECCCCCCCHHHH
T ss_conf             99999999999998569985899982377479--899999968998899764046676--46777641467986899999


Q ss_pred             -HHHHHHHHHHHHCCCEEE-EEEEE----C-CEEEEEECCCCHH-HHHHHHHCCCCHHHHHHH
Q ss_conf             -999999999998498799-99511----7-8788983688303-788997519998999999
Q gi|254780696|r  254 -DICKRIGESLRERGLFFT-GIDVI----G-DYITEINVTSPTC-IREIHRNGGENVASLFWD  308 (316)
Q Consensus       254 -~i~~~~~~~L~~~gl~~~-GiDii----g-~~i~EvNvtsP~g-~~~~~~~~~~~i~~~i~d  308 (316)
                       +++..+.+..++.|..=+ .|-++    | -|++|+| |=..- -.=-+..+|+|+-+.-+.
T Consensus       252 ~~i~~~A~~~a~avgy~g~gTvEfl~d~~~~~yFlE~N-tRlQVEh~vTE~vtGiDlV~~qi~  313 (451)
T 1ulz_A          252 EYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMN-TRIQVEHPVSEMVTGIDIVKWQIK  313 (451)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEE-CSCCTTHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEECC-CCCCCCCCEEEEEECCHHHHHHHH
T ss_conf             99999999999984971111589998389987999624-666777530110007559999999


No 32 
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.14  E-value=2e-08  Score=74.17  Aligned_cols=216  Identities=16%  Similarity=0.216  Sum_probs=133.9

Q ss_pred             HCCEEEEECCCCCCHHHHHH--HHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHH
Q ss_conf             06366883288622479999--99998623585041-17488752565034334543----0443100037245568888
Q gi|254780696|r   82 QMDVILIRQDPPFNMHYITS--TYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYL  154 (316)
Q Consensus        82 ~fD~i~iR~dPp~d~~yi~~--~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~  154 (316)
                      +.|.+++=  |   ..++..  .-.|+.  .+..|+ -+..+-+.-.+|.++-+|.+    ++|+-.+.+|.+++.++++
T Consensus        83 ~iDlvvvG--p---E~pL~~Gi~D~l~~--~gi~vfGps~~~A~lE~sK~f~k~~m~~~~IPta~~~~~~~~~ea~~~~~  155 (442)
T 3lp8_A           83 KIELVVIG--P---ETPLMNGLSDALTE--EGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFID  155 (442)
T ss_dssp             TCCEEEEC--S---HHHHHTTHHHHHHH--TTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHH
T ss_pred             CCCEEEEC--C---CHHHHHHHHHHHHH--CCCCEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHH
T ss_conf             99999989--8---38988788999974--89947864788988753689999999986888751001388999999986


Q ss_pred             HHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-----CCCCCEEECCCCCCCCCEEEEEE-CCE-EE--EEE
Q ss_conf             521-433111688543446874488711588999998400-----13340021053445682699998-998-86--321
Q gi|254780696|r  155 EMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY-----PEPLMIQSYLPQIRDGDKRILLL-NGK-PV--GAV  224 (316)
Q Consensus       155 ~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~-----~~~ii~Qefi~~~~~gD~Rv~vi-~g~-~v--~a~  224 (316)
                      +++ |+|+||...++|+||+.+. +.......++.+....     ...++++||+..   -++-++.+ ||+ ++  ...
T Consensus       156 ~~~~P~VIK~dgla~GKGV~i~~-~~~ea~~~~~~~~~~~~~g~~~~~vvIEE~l~G---~E~S~~a~~dg~~~~~lp~~  231 (442)
T 3lp8_A          156 KHKLPLVVKADGLAQGKGTVICH-THEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG---KEISFFTLVDGSNPVILGVA  231 (442)
T ss_dssp             HSCSSEEEEESSCCTTTSEEEES-SHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS---EEEEEEEEEESSCEEEEEEE
T ss_pred             HCCCCEEEECCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC---CEEEEEEEECCCEEEECCCH
T ss_conf             07997899747667897599975-768999999987531212246761897521487---16778999738906968637


Q ss_pred             ---EEECCCCCCCCCCCCCCCEEEE--E-CCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEECC
Q ss_conf             ---2204568600000014731110--0-77899-----999999999999849879999---511----7878898368
Q gi|254780696|r  225 ---NRIPSEVDNRSNIHAGGKAELT--K-LTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINVT  286 (316)
Q Consensus       225 ---~R~~~~~~~r~Nl~~Gg~~~~~--~-lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNvt  286 (316)
                         .|. -++|.  -...||-..-+  . ++++.     .++...+.+.|+..|+.|.|+   .++    |+||+|.|+-
T Consensus       232 qD~Kr~-~d~d~--GpnTGGMGa~sp~p~~~~~~~~~i~~~i~~p~~~~l~~~g~~y~GvLy~glmlt~~gp~viE~N~R  308 (442)
T 3lp8_A          232 QDYKTI-GDNNK--GPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNEPKLLEYNVR  308 (442)
T ss_dssp             EECCEE-EGGGE--EEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEESS
T ss_pred             HHCCCC-CCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf             751023-58999--998898766678753448888898887426278999866993598875479996897169987422


Q ss_pred             --CCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             --83037889975199989999999988
Q gi|254780696|r  287 --SPTCIREIHRNGGENVASLFWDGIEK  312 (316)
Q Consensus       287 --sP~g~~~~~~~~~~~i~~~i~d~ie~  312 (316)
                        .| ..+-+-.+...|+...+...+..
T Consensus       309 fGDP-E~q~ll~~l~sdl~~~~~~~~~~  335 (442)
T 3lp8_A          309 FGDP-ETQSILPRLNSDFLKLLSLTAKG  335 (442)
T ss_dssp             CCTT-HHHHHGGGBCSCHHHHHHHHHHT
T ss_pred             ECCC-CCEEEECCCCCCHHHHHHHHHCC
T ss_conf             0798-55045303688699999998516


No 33 
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.05  E-value=6.8e-09  Score=77.25  Aligned_cols=237  Identities=14%  Similarity=0.178  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHCCCEEEEE-EHHHEEEE-----CCEEEEEEEEEEEECCCCCEEEECCCC-CCCHHHCCEEEEECCCCC
Q ss_conf             46799999999889889999-54124899-----989999999999807774126504644-352100636688328862
Q gi|254780696|r   22 DSTFAIALEAQVRGYQIFHY-TPDQLYMR-----DSKIYANTQPLSLDEKKEQYYSLGEEK-IIDLSQMDVILIRQDPPF   94 (316)
Q Consensus        22 DTT~~Lm~eAq~RGheV~~~-~~~dL~~~-----~g~v~A~~~~i~i~~~~~~~f~~~~~~-~~~L~~fD~i~iR~dPp~   94 (316)
                      .|.+.++++|.+.|++.-.+ +.++-...     -++++.       .+.   +....... .-.+...|+++    ||+
T Consensus        27 hSa~~i~~~ake~G~~TV~V~~~~~~~~~~~~~~aDe~~~-------~~~---~~~~~~~~~~~~~~~~~ai~----~~~   92 (361)
T 2r7k_A           27 HTSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIY-------VDN---FSDIKNEEIQEKLRELNSIV----VPH   92 (361)
T ss_dssp             TTHHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEE-------CSS---GGGGGSHHHHHHHHHTTEEE----CCB
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEE-------CCC---HHHHHHHHHHHHHCCCCCEE----CCC
T ss_conf             8999999999983997999964886422578153988898-------687---16678999998754689257----881


Q ss_pred             C--HHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCC
Q ss_conf             2--4799999999862358504117488752565034334543----0443100037245568888521-4331116885
Q gi|254780696|r   95 N--MHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGN  167 (316)
Q Consensus        95 d--~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~  167 (316)
                      -  ..+.....+++.  .++.++.+|.+++.+.||...-++.+    ++|+..  .       +.++.+ |+++||.+|.
T Consensus        93 G~lse~~~~~~~~~~--~~i~~~G~~~~i~~~~dk~~~k~~l~~~gip~p~~~--~-------~~~~ig~PvivKp~~~~  161 (361)
T 2r7k_A           93 GSFIAYCGLDNVENS--FLVPMFGNRRILRWESERSLEGKLLREAGLRVPKKY--E-------SPEDIDGTVIVKFPGAR  161 (361)
T ss_dssp             HHHHHHHCHHHHHHT--CCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCEE--S-------SGGGCCSCEEEECSCCC
T ss_pred             CHHHHHHHHHHHHHH--CCCEEECCHHHHHHHHCHHHHHHHHHHCCCCCCHHH--H-------HHHHCCCCEEEEECCCC
T ss_conf             338761333568997--898498989999987789999999997499983555--4-------55406777899975678


Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHC------CCCCCEEECCCCCC----------CCCEEEEEEC-CEE--EEEEEEEC
Q ss_conf             43446874488711588999998400------13340021053445----------6826999989-988--63212204
Q gi|254780696|r  168 GGTGVFRITLGDRNFSSLIEMLFEKY------PEPLMIQSYLPQIR----------DGDKRILLLN-GKP--VGAVNRIP  228 (316)
Q Consensus       168 ~G~gV~~i~~~~~~~~~~~e~~~~~~------~~~ii~Qefi~~~~----------~gD~Rv~vi~-g~~--v~a~~R~~  228 (316)
                      ||+|++.+. +...+...++......      ..++++|+|+....          +.++.++..+ |..  +.++.+.+
T Consensus       162 Gg~G~~iv~-~~~el~~~~~~~~~~~~~~~~~~~~~lieefi~G~~~~~~~~~~~~~~e~ev~~~~~g~~~~i~~~~~~~  240 (361)
T 2r7k_A          162 GGRGYFIAS-STEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIP  240 (361)
T ss_dssp             C---EEEES-SHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSC
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCEEECC
T ss_conf             980389978-9999999999999863422463167899870478456654204664214799775368700445367315


Q ss_pred             CCCCCCCCCCCCCCE---EEEECCH----HHHHHHHHHHHHHHHC---CC-EEEEEEEE----CC-EEEEEE
Q ss_conf             568600000014731---1100778----9999999999999984---98-79999511----78-788983
Q gi|254780696|r  229 SEVDNRSNIHAGGKA---ELTKLTK----IDLDICKRIGESLRER---GL-FFTGIDVI----GD-YITEIN  284 (316)
Q Consensus       229 ~~~~~r~Nl~~Gg~~---~~~~lt~----~~~~i~~~~~~~L~~~---gl-~~~GiDii----g~-~i~EvN  284 (316)
                      .+..-+...+.|=..   -+..+++    +.++++.++++.++..   |+ -.++|+++    |+ |++|||
T Consensus       241 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~al~~~~~~g~~G~~~vef~vd~dg~~y~iEvN  312 (361)
T 2r7k_A          241 AKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMS  312 (361)
T ss_dssp             HHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEE
T ss_pred             HHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEEE
T ss_conf             564440687567450436884469999999999999999997653368735047799999699979999987


No 34 
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A
Probab=99.03  E-value=1.8e-08  Score=74.45  Aligned_cols=217  Identities=16%  Similarity=0.131  Sum_probs=123.0

Q ss_pred             HHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCC-------------
Q ss_conf             006366883288-622479999999986235850-4117488752565034334543-----04431-------------
Q gi|254780696|r   81 SQMDVILIRQDP-PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPT-------------  140 (316)
Q Consensus        81 ~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T-------------  140 (316)
                      ...|+|++-=.- .-|..+-.   .++.  .|.. +-=+|.+|+.+.||..+-++..     .+|-|             
T Consensus       122 ~~~daIhPGyGflsEna~fA~---~~~~--~Gi~fIGPs~~~i~~~gDK~~ar~~a~~~gVPvvPgs~~~~~~~~~~~~~  196 (540)
T 3glk_A          122 IPVQAVWAGWGHASENPKLPE---LLCK--NGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL  196 (540)
T ss_dssp             TTCSEEECCSSGGGGCTHHHH---HHHH--TTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC
T ss_pred             HCCCEEECCCCCCCCCHHHHH---HHHH--CCCEEECCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf             793999828743143999999---9998--69989997999999871848789999983899479888765411000123


Q ss_pred             ---------------EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-HHHCCCCCCEEECC
Q ss_conf             ---------------00037245568888521-43311168854344687448871158899999-84001334002105
Q gi|254780696|r  141 ---------------LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-FEKYPEPLMIQSYL  203 (316)
Q Consensus       141 ---------------~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-~~~~~~~ii~Qefi  203 (316)
                                     -..++.+++.++.++.| |+++||.+|.||+|+..+. +...+...++.. ...+..++++++|+
T Consensus       197 ~~~~~~~~~~~~~~~~~v~s~eEa~~~A~~IGyPv~iKps~ggGGrGm~iv~-~~~el~~a~~~A~~~~~~~~v~vEk~i  275 (540)
T 3glk_A          197 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAE-SAEDFPILFRQVQSEIPGSPIFLMKLA  275 (540)
T ss_dssp             ----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEEC-STTTHHHHHHHHHHHSTTCCEEEEECC
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             3221013432223334348999999999855998899965779974348827-999999989999841888857999964


Q ss_pred             CCCCCCCEEEEEE-CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEE-EEEEE-
Q ss_conf             3445682699998-9988632122045686000000147311100778999----999999999998498799-99511-
Q gi|254780696|r  204 PQIRDGDKRILLL-NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFT-GIDVI-  276 (316)
Q Consensus       204 ~~~~~gD~Rv~vi-~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~-GiDii-  276 (316)
                      +...+-++-++-- .|.+++...|.-+-. .|.. ..-..+-...|+++.+    +.+.++++.|   |+.-+ -|.++ 
T Consensus       276 ~~~rhiEvqvl~D~~Gn~i~l~erdcsiq-rr~q-k~ie~aP~~~l~~~~r~~l~~~A~~la~al---gy~g~gtvEflv  350 (540)
T 3glk_A          276 QHARHLEVQILADQYGNAVSLFGRDCSIQ-RRHQ-KIVEEAPATIAPLAIFEFMEQCAIRLAKTV---GYVSAGTVEYLY  350 (540)
T ss_dssp             SSEEEEEEEEEECTTSCEEEEEEEEEEEC----C-CSEEEESCTTSCHHHHHHHHHHHHHHHHHH---TCCEEEEEEEEE
T ss_pred             CCCCCCEEEEEEECCCCEEEEEEEEECCC-CCCC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCEEEEEE
T ss_conf             27754247999975898899972360456-6788-961780796560899999999999999976---952664699978


Q ss_pred             ---CC-EEEEEECCCCHH-HHHHHHHCCCCHHHHHHHH
Q ss_conf             ---78-788983688303-7889975199989999999
Q gi|254780696|r  277 ---GD-YITEINVTSPTC-IREIHRNGGENVASLFWDG  309 (316)
Q Consensus       277 ---g~-~i~EvNvtsP~g-~~~~~~~~~~~i~~~i~d~  309 (316)
                         |. |++|+| +-..+ -.=.+.+||+|+.+.-+..
T Consensus       351 ~~dg~~yfiEvN-pRlqveh~vte~vTGvDLv~~qi~i  387 (540)
T 3glk_A          351 SQDGSFHFLELN-PRLQVEHPCTEMIADVNLPAAQLQI  387 (540)
T ss_dssp             ETTSCEEEEEEE-CSCCTTHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCCCEEEEEEE-CCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf             389989999866-8877776315546598799999998


No 35 
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.03  E-value=3.9e-09  Score=78.87  Aligned_cols=281  Identities=15%  Similarity=0.175  Sum_probs=162.1

Q ss_pred             CCEEEEEECCHHHCCCC---CCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf             33189970998884847---646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r    4 IRNIAIQMNHISTVKVK---EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL   80 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~---~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L   80 (316)
                      ++||+++.-=.-.+--.   -.|....++++++.|+++-..+++--++.-..-.|..  +-+.+-...+  +  .+.+.-
T Consensus         7 ikKVLIiGsG~i~IGqa~EfDys~~qai~alke~Gi~tVlVnsNpati~td~~~AD~--vYiePlt~e~--i--~~Ii~~   80 (1073)
T 1a9x_A            7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADA--TYIEPIHWEV--V--RKIIEK   80 (1073)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSE--EECSCCCHHH--H--HHHHHH
T ss_pred             CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCE--EEECCCCHHH--H--HHHHHH
T ss_conf             888999888802313010137789999999998799899985884462488441506--7987899999--9--999998


Q ss_pred             HHCCEEEEECCCCCC-HHHHHHHHHHHHH---C-CCCEEE-CCHHHHHHCCCHHHHHHHH----HHCCCCEEECCHHHHH
Q ss_conf             006366883288622-4799999999862---3-585041-1748875256503433454----3044310003724556
Q gi|254780696|r   81 SQMDVILIRQDPPFN-MHYITSTYLLEKI---N-PETLIV-NNPFWIRNSPEKIFVTEFS----ELMPPTLISRDITQIT  150 (316)
Q Consensus        81 ~~fD~i~iR~dPp~d-~~yi~~~~~Le~~---~-~~~~vi-N~p~~i~~~~eKl~~~~~~----~~~P~T~vt~~~~~~~  150 (316)
                      ..-|+|++-    |- +..++...-|+..   + .++.+| =+|++|+...||-..-++.    .++|+..+.++.+++.
T Consensus        81 e~pDaI~p~----~GgqtaLnl~~~L~e~gil~~~gI~~iGps~~~I~~~~Dr~~~r~~m~~~gvPv~~s~~v~s~eea~  156 (1073)
T 1a9x_A           81 ERPDAVLPT----MGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEAL  156 (1073)
T ss_dssp             HCCSEEECS----SSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSHHHHH
T ss_pred             HCCCEEEEC----CCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEECCHHHHH
T ss_conf             589999988----8784789999999975967877988988999999972599999999997799989972208999999


Q ss_pred             HHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCEEECCCCCCCCCEEEEEE---CCEE--EEE
Q ss_conf             8888521-433111688543446874488711588999998-40013340021053445682699998---9988--632
Q gi|254780696|r  151 RFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLF-EKYPEPLMIQSYLPQIRDGDKRILLL---NGKP--VGA  223 (316)
Q Consensus       151 ~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~-~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~--v~a  223 (316)
                      ++.++.| ||++||.+|.||+|...+ .++..+...++... ..+..++++.+||...+  .+=+-|+   .|..  +|.
T Consensus       157 ~~A~~IGyPViIrps~~~GG~Gm~iv-~~~~eL~~~~~~a~~~s~~~~vliEk~i~g~k--eIEvqVlrD~~gn~i~v~~  233 (1073)
T 1a9x_A          157 AVAADVGFPCIIRPSFTMGGSGGGIA-YNREEFEEICARGLDLSPTKELLIDESLIGWK--EYEMEVVRDKNDNCIIVCS  233 (1073)
T ss_dssp             HHHHHHCSSEEEEETTCCTTTTCEEE-SSHHHHHHHHHHHHHHCTTSCEEEEECCTTSE--EEEEEEEECTTCCEEEEEE
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCCEE-CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EEEEEEEECCCCCEEEEEE
T ss_conf             99986599889997877899876077-79999999999999738998679998517855--8999998717998899941


Q ss_pred             EEEECCCCCCCCCCCCCCCEE---EEECCHHHH----HHHHHHHHHHHHCCCEEEE--EEEE-----CC-EEEEEECCCC
Q ss_conf             122045686000000147311---100778999----9999999999984987999--9511-----78-7889836883
Q gi|254780696|r  224 VNRIPSEVDNRSNIHAGGKAE---LTKLTKIDL----DICKRIGESLRERGLFFTG--IDVI-----GD-YITEINVTSP  288 (316)
Q Consensus       224 ~~R~~~~~~~r~Nl~~Gg~~~---~~~lt~~~~----~i~~~~~~~L~~~gl~~~G--iDii-----g~-~i~EvNvtsP  288 (316)
                      +.+.-+-|.     |.|=+.+   ...|+++++    +.|.++++.+   |+.-+|  |-+.     +. |++|+|   |
T Consensus       234 ~E~~d~~Gi-----htgdsI~vaPa~tL~d~~~q~lr~aA~kia~~l---~~~~gg~nVqFa~d~~~~~~y~iEvN---p  302 (1073)
T 1a9x_A          234 IENFDAMGI-----HTGDSITVAPAQTLTDKEYQIMRNASMAVLREI---GVETGGSNVQFAVNPKNGRLIVIEMN---P  302 (1073)
T ss_dssp             EEESSCTTS-----CGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHH---TCCSEEEEEEEEECTTTCCEEEEEEE---S
T ss_pred             CHHHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEEECCCCCCEEEEEEC---C
T ss_conf             011334202-----246604881276389999999999999999974---94336633699874899958999823---5


Q ss_pred             HHHHH---HHHHCCCCHHHHHHH
Q ss_conf             03788---997519998999999
Q gi|254780696|r  289 TCIRE---IHRNGGENVASLFWD  308 (316)
Q Consensus       289 ~g~~~---~~~~~~~~i~~~i~d  308 (316)
                      ---++   .+.+||.+++..-+.
T Consensus       303 R~srs~~vaskaTG~pia~v~ak  325 (1073)
T 1a9x_A          303 RVSRSSALASKATGFPIAKVAAK  325 (1073)
T ss_dssp             SCCHHHHHHHHHHSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCCHHHHHHH
T ss_conf             31101444456408868999999


No 36 
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.01  E-value=5.4e-08  Score=71.38  Aligned_cols=212  Identities=17%  Similarity=0.158  Sum_probs=123.5

Q ss_pred             HHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHCCCHHHHHHHHH-----HCCCC-------------
Q ss_conf             006366883288-6224799999999862358504-117488752565034334543-----04431-------------
Q gi|254780696|r   81 SQMDVILIRQDP-PFNMHYITSTYLLEKINPETLI-VNNPFWIRNSPEKIFVTEFSE-----LMPPT-------------  140 (316)
Q Consensus        81 ~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~v-iN~p~~i~~~~eKl~~~~~~~-----~~P~T-------------  140 (316)
                      ...|+|++-=.- .-|..+-   ..++.  .|..+ -=+|.+|+.+.||..+-++..     .+|-|             
T Consensus       138 ~~~daIhPGyGflSEna~fA---~~~~~--~Gi~fIGPs~~~i~~~GDK~~ar~la~~agVPvvPgs~~~~~~~~~~~~~  212 (587)
T 3jrx_A          138 IPVQAVWAGWGHASENPKLP---ELLCK--NGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL  212 (587)
T ss_dssp             TTCSEEECCSSTTTTCTHHH---HHHHT--TTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC-----
T ss_pred             HCCCEEECCCCCCCCCHHHH---HHHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             69199975866445599999---99998--78979995999999863979999999980899479888766521110134


Q ss_pred             ---------------EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-HHHCCCCCCEEECC
Q ss_conf             ---------------00037245568888521-43311168854344687448871158899999-84001334002105
Q gi|254780696|r  141 ---------------LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-FEKYPEPLMIQSYL  203 (316)
Q Consensus       141 ---------------~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-~~~~~~~ii~Qefi  203 (316)
                                     -..++.+++.++.++.| ||++||.+|.||+|+.++.. ..++...++.. ...+..++++.+|+
T Consensus       213 ~~~~~~~~~~~~~~~g~v~s~eEa~~~A~~IGyPVmVKps~ggGGrGmriv~~-~eel~~a~~~A~~~~~~~~vliEk~i  291 (587)
T 3jrx_A          213 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAES-AEDFPILFRQVQSEIPGSPIFLMKLA  291 (587)
T ss_dssp             -CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECS-TTTHHHHHHHHHHHSTTCCEEEEECC
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             43210134322233343489999999998549988999667789843378368-58999999999841888856999840


Q ss_pred             CCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEE-EEEE
Q ss_conf             3445682699998---9988632122045686000000147311100778999----999999999998498799-9951
Q gi|254780696|r  204 PQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFT-GIDV  275 (316)
Q Consensus       204 ~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~-GiDi  275 (316)
                      +...+  +-|-++   .|.++....|.-+-  =|.+-.....+-...++++.+    +.+.+++..+   |..-+ -|.+
T Consensus       292 ~~~rh--iEVqvl~D~~G~~i~l~erdcsi--qrr~qk~ieeaPa~~l~~~~r~~m~~~a~~la~al---gy~g~gtvEf  364 (587)
T 3jrx_A          292 QHARH--LEVQILADQYGNAVSLFGRDCSI--QRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTV---GYVSAGTVEY  364 (587)
T ss_dssp             CSCEE--EEEEEEECSSSCEEEEEEEEEEE--ESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHH---TCCEEEEEEE
T ss_pred             HHHHH--CCEEEEEECCCCEEEEEEEECCC--CCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCEEEE
T ss_conf             12210--20257872589489997135365--55688874234787563889988999999999975---9756756899


Q ss_pred             E----CC-EEEEEE----CCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             1----78-788983----6883037889975199989999999
Q gi|254780696|r  276 I----GD-YITEIN----VTSPTCIREIHRNGGENVASLFWDG  309 (316)
Q Consensus       276 i----g~-~i~EvN----vtsP~g~~~~~~~~~~~i~~~i~d~  309 (316)
                      +    |. |++|+|    ++.|    =.+.+||+|+.+.-+..
T Consensus       365 lv~~dg~~yfiEvNpRlqvehp----vte~vTGvDLV~~qi~i  403 (587)
T 3jrx_A          365 LYSQDGSFHFLELNPRLQVEHP----CTEMIADVNLPAAQLQI  403 (587)
T ss_dssp             EECSSSCEEEEEEESSCCTTHH----HHHHHHTCCHHHHHHHH
T ss_pred             EECCCCCEEEEEECCCCCCCCH----HHHHHCCCCHHHHHHHH
T ss_conf             8879996899994177566621----47765199889999998


No 37 
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.01  E-value=6.7e-08  Score=70.75  Aligned_cols=269  Identities=11%  Similarity=0.065  Sum_probs=143.5

Q ss_pred             CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC---HH
Q ss_conf             318997099888484764679999999988988999954124899989999999999807774126504644352---10
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID---LS   81 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~---L~   81 (316)
                      .||+++..--        --..+++||++.|+++..++++.=.-  +.-.|.- .+..+...       ......   ..
T Consensus        12 ~kvlIiG~Gq--------lgr~~a~Aak~lG~~v~~~~~~~~~p--~~~~ad~-~~~~~~~D-------~e~l~~~a~~~   73 (391)
T 1kjq_A           12 TRVMLLGSGE--------LGKEVAIECQRLGVEVIAVDRYADAP--AMHVAHR-SHVINMLD-------GDALRRVVELE   73 (391)
T ss_dssp             CEEEEESCSH--------HHHHHHHHHHTTTCEEEEEESSTTCG--GGGGSSE-EEECCTTC-------HHHHHHHHHHH
T ss_pred             CEEEEECCCH--------HHHHHHHHHHHCCCEEEEEECCCCCC--HHHHCCE-EEEECCCC-------HHHHHHHHHHH
T ss_conf             8999989789--------99999999998799899997999983--6762663-69836889-------99999999984


Q ss_pred             HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECC-HHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH
Q ss_conf             063668832886224799999999862358504117-488752565034334543----044310003724556888852
Q gi|254780696|r   82 QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNN-PFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM  156 (316)
Q Consensus        82 ~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~-p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~  156 (316)
                      ..|+|..=.+.+ ...   ....++.  .+..++.. +.+++...+|.+.-.|.+    ++|+.....+.+++.+++++.
T Consensus        74 ~~d~v~~~~e~~-~~~---~~~~~~~--~g~~~~~p~~~~~~~~~~k~~~k~~~~~~~ipt~~~~~~~~~~e~~~~~~~~  147 (391)
T 1kjq_A           74 KPHYIVPEIEAI-ATD---MLIQLEE--EGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADI  147 (391)
T ss_dssp             CCSEEEECSSCS-CHH---HHHHHHH--TTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCH-HHH---HHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             999999277745-689---9999996--5971079819999987618999876651588840134669999999999872


Q ss_pred             H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH---HCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECC
Q ss_conf             1-4331116885434468744887115889999984---0013340021053445682699998---9988632122045
Q gi|254780696|r  157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE---KYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPS  229 (316)
Q Consensus       157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~---~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~  229 (316)
                      + |+|+||..+++|+|++++... ..+...++....   .+...++++++++...  ..-++++   +|..+......  
T Consensus       148 ~~PvviK~~~~~gg~gv~~v~~~-~~~~~a~~~a~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~g~~~~~~~~~--  222 (391)
T 1kjq_A          148 GYPCIVKPVMSSSGKGQTFIRSA-EQLAQAWKYAQQGGRAGAGRVIVEGVVKFDF--EITLLTVSAVDGVHFCAPVGH--  222 (391)
T ss_dssp             CSSEEEEESCC---CCCEEECSG-GGHHHHHHHHHHHSGGGCCCEEEEECCCCSE--EEEEEEEEETTEEEECCCEEE--
T ss_pred             CCCCEEEEEECCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCE--EEEEEEEECCCCCEEECCCCC--
T ss_conf             88724543203688854997688-8999999998875225887614899972222--468877861688789444001--


Q ss_pred             CCCCCCCCCCCCCEEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHH--HHHHHHHCC
Q ss_conf             68600000014731110077899----999999999999849879999511----78788983688303--788997519
Q gi|254780696|r  230 EVDNRSNIHAGGKAELTKLTKID----LDICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTC--IREIHRNGG  299 (316)
Q Consensus       230 ~~~~r~Nl~~Gg~~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g--~~~~~~~~~  299 (316)
                        ....+. ..+...+..++++.    ++++.+++..|...|+.  .++++    |.|++|+|. -|++  ... ...++
T Consensus       223 --~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~G~~--~ie~~v~~~~~~v~Ei~~-R~~~~~~~~-~~~~~  295 (391)
T 1kjq_A          223 --RQEDGD-YRESWQPQQMSPLALERAQEIARKVVLALGGYGLF--GVELFVCGDEVIFSEVSP-RPHDTGMVT-LISQD  295 (391)
T ss_dssp             --EEETTE-EEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEE--EEEEEEETTEEEEEEEES-SCCGGGGGH-HHHBS
T ss_pred             --CCCCCC-CCEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCC--CEEEEEECCCEEEEEECC-CCCCCEEEE-EECCC
T ss_conf             --011785-22451785446899999999976544540615753--126788438379999868-875760366-52027


Q ss_pred             CCHHHHHHHH
Q ss_conf             9989999999
Q gi|254780696|r  300 ENVASLFWDG  309 (316)
Q Consensus       300 ~~i~~~i~d~  309 (316)
                      .+.....+..
T Consensus       296 ~~~~~~~~~~  305 (391)
T 1kjq_A          296 LSEFALHVRA  305 (391)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
T ss_conf             4299999998


No 38 
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.99  E-value=7.6e-08  Score=70.40  Aligned_cols=276  Identities=19%  Similarity=0.242  Sum_probs=150.5

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCE----------EEEEEHHHE-----EEE-CCEEEEEEEEEEEECCC
Q ss_conf             53318997099888484764679999999988988----------999954124-----899-98999999999980777
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQ----------IFHYTPDQL-----YMR-DSKIYANTQPLSLDEKK   66 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGhe----------V~~~~~~dL-----~~~-~g~v~A~~~~i~i~~~~   66 (316)
                      +++||++- |       ..---++++++|++.|++          |-++...|.     +++ ..+.+      .+....
T Consensus        46 ~~~kvLiA-N-------RGEiA~Riira~~elgi~t~~~~~~~~~v~v~~~~d~d~~~~hv~~ADe~~------~i~~~~  111 (554)
T 1w96_A           46 VISKILIA-N-------NGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYI------EVPGGT  111 (554)
T ss_dssp             CCCEEEEC-C-------CHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEE------ECCCSS
T ss_pred             CCCEEEEE-C-------CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCEEE------ECCCCC
T ss_conf             64458886-5-------869999999999981750014557753389983563457870387498899------758997


Q ss_pred             --CCEEEECCCCCC---CHHHCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----
Q ss_conf             --412650464435---210063668832886-22479999999986235850-4117488752565034334543----
Q gi|254780696|r   67 --EQYYSLGEEKII---DLSQMDVILIRQDPP-FNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----  135 (316)
Q Consensus        67 --~~~f~~~~~~~~---~L~~fD~i~iR~dPp-~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----  135 (316)
                        +.+...  ...+   .....|+|++=-..- -|..+-.   .++.++.|.. +-=+|.+|+.+.||..+-++..    
T Consensus       112 ~~~sYl~i--~~Ii~~A~~~~~daihPGyGFLSEn~~fA~---~~~~a~~gi~fIGPs~~~i~~~gdK~~ar~la~~~GV  186 (554)
T 1w96_A          112 NNNNYANV--DLIVDIAERADVDAVWAGWGHASENPLLPE---KLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKV  186 (554)
T ss_dssp             GGGTTTCH--HHHHHHHHHTTCSEEECCSSTTTTCTHHHH---HHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTC
T ss_pred             HHCCCCCH--HHHHHHHHHHCCCEEEECCCCCCCCHHHHH---HHHHHCCCCEEECCCHHHHHHHHCHHHHHHHHHHHCC
T ss_conf             01011499--999999999496999818740203999999---9997069959989699999976479999999998399


Q ss_pred             H-CCCC-------------------------EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf             0-4431-------------------------00037245568888521-4331116885434468744887115889999
Q gi|254780696|r  136 L-MPPT-------------------------LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEM  188 (316)
Q Consensus       136 ~-~P~T-------------------------~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~  188 (316)
                      + +|-|                         -..+|.+++.++.++.| ||++||.+|.||+|+..+. ++..+...++.
T Consensus       187 PviPgs~~~i~~~~~~~~~~~~~~~~~~~~~g~~~s~eea~~~A~~IGyPVivKps~ggGGrGm~iv~-~~~el~~a~~~  265 (554)
T 1w96_A          187 PCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVE-REEDFIALYHQ  265 (554)
T ss_dssp             CBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEEC-SHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC-CHHHHHHHHHH
T ss_conf             94788776644101122101122321000023348999999999756987899723568873679972-74776666788


Q ss_pred             H-HHHCCCCCCEEECCCCCCCCCEEEEEE-C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHH
Q ss_conf             9-840013340021053445682699998-9--988632122045686000000147311100778999----9999999
Q gi|254780696|r  189 L-FEKYPEPLMIQSYLPQIRDGDKRILLL-N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIG  260 (316)
Q Consensus       189 ~-~~~~~~~ii~Qefi~~~~~gD~Rv~vi-~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~  260 (316)
                      . ..-+..++++.+||+...+  +-|-++ |  |..++...|--.-  -|.+-...-.+-...++++.+    +.+.+++
T Consensus       266 a~~~~~~~~vliEk~l~~~rh--iEVqvi~D~~G~~v~l~~rdcsi--qr~~qk~ie~aP~~~l~~~~~~~~~~~a~~la  341 (554)
T 1w96_A          266 AANEIPGSPIFIMKLAGRARH--LEVQLLADQYGTNISLFGRDCSV--QRRHQKIIEEAPVTIAKAETFHEMEKAAVRLG  341 (554)
T ss_dssp             HHHHSTTCCEEEEECCCSCEE--EEEEEEECTTSCEEEEEEEEEEE--EETTEEEEEEESCCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCEEEEEECHHHEE--EEEEEEEECCCCEEEEECCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             886268986799982311111--12478982699889995611231--33456765457851001899999999999999


Q ss_pred             HHHHHCCCEEEE-EEEE----CC--EEEEEE----CCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             999984987999-9511----78--788983----6883037889975199989999999
Q gi|254780696|r  261 ESLRERGLFFTG-IDVI----GD--YITEIN----VTSPTCIREIHRNGGENVASLFWDG  309 (316)
Q Consensus       261 ~~L~~~gl~~~G-iDii----g~--~i~EvN----vtsP~g~~~~~~~~~~~i~~~i~d~  309 (316)
                      +.+   |+.=+| +.++    ++  |++|+|    ++.|    =.+.+||+|+.+.-+..
T Consensus       342 ~~l---gy~g~Gtvefl~~~~~~~~YfiEvNpR~qvehp----vte~vTGvdLV~~qi~i  394 (554)
T 1w96_A          342 KLV---GYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHP----TTEMVSGVNLPAAQLQI  394 (554)
T ss_dssp             HHH---TCCEEEEEEEEECTTTCCEEEEEEECSCCTTTH----HHHHHHCCCHHHHHHHH
T ss_pred             HHC---CCEECCEEEEEEECCCCCEEEEEECCCCCCCCC----HHHHHHCCCHHHHHHHH
T ss_conf             975---961232245776078994778860465455410----01276597899999999


No 39 
>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens}
Probab=98.98  E-value=1.9e-08  Score=74.40  Aligned_cols=218  Identities=16%  Similarity=0.227  Sum_probs=133.9

Q ss_pred             HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH
Q ss_conf             00636688328862247999999998623585041-17488752565034334543----04431000372455688885
Q gi|254780696|r   81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE  155 (316)
Q Consensus        81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~  155 (316)
                      .+.|.|++=-.-|.. .++.  -.|+.  .+..|+ .+..+.+.-.+|.++-+|.+    ++|+..+..+.+++.+|+++
T Consensus        87 ~~iDlvivGpE~pL~-~Gl~--D~l~~--~gi~vfGps~~aa~lE~sK~f~k~~m~~~~Ipta~~~~~~~~~ea~~~i~~  161 (452)
T 2qk4_A           87 KKIEFVVVGPEAPLA-AGIV--GNLRS--AGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILS  161 (452)
T ss_dssp             HTCCEEEECSSHHHH-TTHH--HHHHH--TTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHH
T ss_pred             HCCCEEEECCCHHHH-HHHH--HHHHH--CCCCEECCHHHHHHHHHCHHHHHHHHHHCCCCCCHHEEEECHHHHHHHHHH
T ss_conf             599999989738989-8899--99986--799443550888887747999999998517999702399468999999986


Q ss_pred             HH-H-HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-----CCCCCCEEECCCCCCCCCEEEEEE-CCE-EE--EE-
Q ss_conf             21-4-3311168854344687448871158899999840-----013340021053445682699998-998-86--32-
Q gi|254780696|r  156 MK-D-IIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK-----YPEPLMIQSYLPQIRDGDKRILLL-NGK-PV--GA-  223 (316)
Q Consensus       156 ~~-~-vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~-----~~~~ii~Qefi~~~~~gD~Rv~vi-~g~-~v--~a-  223 (316)
                      .+ | +|+||...++|+||+... +.......++.+...     ....++++||+.   +-++-++.+ ||+ .+  .+ 
T Consensus       162 ~~~P~vVIK~dgla~GKGV~v~~-~~~ea~~~~~~~~~~~~~g~~~~~VviEe~l~---G~E~S~~a~~dg~~~~~lp~~  237 (452)
T 2qk4_A          162 ADFPALVVKASGLAAGKGVIVAK-SKEEACKAVQEIMQEKAFGAAGETIVIEELLD---GEEVSCLCFTDGKTVAPMPPA  237 (452)
T ss_dssp             CSSCEEEEEESBC---CCEEECS-SHHHHHHHHHHHTTC-------CCEEEEECCC---SEEEEEEEEECSSCEEECCCB
T ss_pred             CCCCCEEEECCCCCCCCCEEEEE-CHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC---CEEEEEEEEECCCCEECCCCH
T ss_conf             69982787347657887606552-47899999998740364256797399996258---736777999869804627407


Q ss_pred             --EEEECCCCCCCCCCCCCCCEEEE---ECCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEECC
Q ss_conf             --12204568600000014731110---077899-----999999999999849879999---511----7878898368
Q gi|254780696|r  224 --VNRIPSEVDNRSNIHAGGKAELT---KLTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINVT  286 (316)
Q Consensus       224 --~~R~~~~~~~r~Nl~~Gg~~~~~---~lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNvt  286 (316)
                        ..|. -+||.-  ...||....+   .++++.     .++.+.+.+.|+..|+.|.|+   .++    |+||+|+|+-
T Consensus       238 qD~Kr~-~dgd~G--pnTGgMGa~~P~~~~~~~~~~~i~~~i~~p~i~~l~~eg~~y~G~ly~glmit~~gp~viE~N~R  314 (452)
T 2qk4_A          238 QDHKRL-LEGDGG--PNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNGPKVLEFNCR  314 (452)
T ss_dssp             EEEEEE-ETTTEE--EEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTEEEEEEEESS
T ss_pred             HHHHHH-CCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEECC
T ss_conf             766651-378989--98999740157821025689999998889999999865995499975005760799769999667


Q ss_pred             --CCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             --8303788997519998999999998
Q gi|254780696|r  287 --SPTCIREIHRNGGENVASLFWDGIE  311 (316)
Q Consensus       287 --sP~g~~~~~~~~~~~i~~~i~d~ie  311 (316)
                        .| ..+-+-...+.|+...+...+.
T Consensus       315 fGDP-E~q~ll~~l~~dl~~l~~~~~~  340 (452)
T 2qk4_A          315 FGDP-ECQVILPLLKSDLYEVIQSTLD  340 (452)
T ss_dssp             CCTT-THHHHGGGBCSCHHHHHHHHHT
T ss_pred             CCCC-CCCEEECCCCCCHHHHHHHHHC
T ss_conf             8998-5304642568869999999970


No 40 
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.96  E-value=5.3e-08  Score=71.43  Aligned_cols=194  Identities=14%  Similarity=0.230  Sum_probs=128.3

Q ss_pred             CCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHH
Q ss_conf             585041-17488752565034334543----0443100037245568888521-43311168854344687448871158
Q gi|254780696|r  110 PETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFS  183 (316)
Q Consensus       110 ~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~  183 (316)
                      .|+.++ -+|++|..+-||-..-++.+    +.|+.....+.+++.+|.++.| ||++||.++-||+|...+ .+++.+.
T Consensus       657 ~gi~ilGts~e~Id~aedR~~f~~ll~~lgi~~p~~~~~~s~eea~~~a~~iGyPVlvRpSyvlGG~~M~iv-~~~~eL~  735 (1073)
T 1a9x_A          657 AGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIV-YDEADLR  735 (1073)
T ss_dssp             TTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCSSEEEEC-------CEEEE-CSHHHHH
T ss_pred             CCCEEECCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEE-ECHHHHH
T ss_conf             798388898467552236799999999728888887544878899999986499769741335667742799-6489999


Q ss_pred             HHHHHHH-HHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCE---EEEECCHHHH----HH
Q ss_conf             8999998-40013340021053445682699998998863212204568600000014731---1100778999----99
Q gi|254780696|r  184 SLIEMLF-EKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKA---ELTKLTKIDL----DI  255 (316)
Q Consensus       184 ~~~e~~~-~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~---~~~~lt~~~~----~i  255 (316)
                      ..++... .....++++.+|+.+..+=|+.++- ||+-+....+.  +.==++++|.|-+.   -+..|+++.+    +.
T Consensus       736 ~~l~~a~~~s~~~~vlIekfl~~~~EiEvd~i~-Dg~~v~i~~i~--EhIe~aGvHsgDs~~v~P~~~Ls~~~~~~i~~~  812 (1073)
T 1a9x_A          736 RYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAIC-DGEMVLIGGIM--EHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ  812 (1073)
T ss_dssp             HHHHHCC--------EEEBCCTTCEEEEEEEEE-CSSCEEEEEEE--EESSCTTSCGGGCCEEESCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEC-CCCEEEEEECC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             999999964999988887615786577766212-68758994040--132347763245345079833699999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEE--CC--EEEEEECCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             999999999849879999511--78--7889836883037889975199989999999
Q gi|254780696|r  256 CKRIGESLRERGLFFTGIDVI--GD--YITEINVTSPTCIREIHRNGGENVASLFWDG  309 (316)
Q Consensus       256 ~~~~~~~L~~~gl~~~GiDii--g~--~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~  309 (316)
                      +.++++.|.-.|+.  -|-++  ++  |++|+|--+---..-...++|.|+++.-+..
T Consensus       813 a~kia~~l~i~G~~--niQF~vkd~~~yviE~NpRasrt~pf~sk~tG~~lv~~a~~i  868 (1073)
T 1a9x_A          813 VQKLAFELQVRGLM--NVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARV  868 (1073)
T ss_dssp             HHHHHHHTTCCEEE--EEEEEECSSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCE--EEEEEEECCEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf             99999864623422--799999899999997424201220899988498799999999


No 41 
>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ...
Probab=98.93  E-value=2.8e-08  Score=73.24  Aligned_cols=281  Identities=15%  Similarity=0.167  Sum_probs=149.3

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHEEEE---CCEEEEEEEEEEEECCCCCEEEECCCC-
Q ss_conf             533189970998884847646799999999889889999--54124899---989999999999807774126504644-
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQLYMR---DSKIYANTQPLSLDEKKEQYYSLGEEK-   76 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL~~~---~g~v~A~~~~i~i~~~~~~~f~~~~~~-   76 (316)
                      |++||++- |       ..---++++++|++.|++.-..  +++..+..   -.++    ..+........+.....-. 
T Consensus         1 m~~kvLia-n-------rGeiA~riira~relGi~tVav~s~~D~~s~~v~~ADe~----~~i~~~~~~~sYld~~~Ii~   68 (449)
T 2w70_A            1 MLDKIVIA-N-------RGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADET----VCIGPAPSVKSYLNIPAIIS   68 (449)
T ss_dssp             CCSEEEEC-C-------CHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEE----EEEECSSGGGTTTCHHHHHH
T ss_pred             CCCEEEEE-C-------CCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCHHHCCEE----EECCCCCHHHHHCCHHHHHH
T ss_conf             96419998-9-------739999999999986993999837044158897779899----98489862420048999999


Q ss_pred             CCCHHHCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCC--EEECCHH
Q ss_conf             35210063668832886-22479999999986235850-4117488752565034334543----0-4431--0003724
Q gi|254780696|r   77 IIDLSQMDVILIRQDPP-FNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPT--LISRDIT  147 (316)
Q Consensus        77 ~~~L~~fD~i~iR~dPp-~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T--~vt~~~~  147 (316)
                      ...-...|+|++=...- -+..+..   .++.  .|.. +-.+|.+|+.+.||..+-.+.+    + +|-+  .++.+.+
T Consensus        69 ~a~~~g~daihpGyGflsena~fA~---~~~~--~Gi~fIGPs~~~i~~~gDK~~ar~la~~~gvp~ip~~~~~~~~~~~  143 (449)
T 2w70_A           69 AAEITGAVAIHPGYGFLSENANFAE---QVER--SGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMD  143 (449)
T ss_dssp             HHHHHTCCEEECCSSTTTTCHHHHH---HHHH--TTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHH
T ss_pred             HHHHCCCCEEECCHHHHHHCHHHHH---HHHH--CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             9988199999647416543732038---8998--8992888899999874098999999998599968987666688599


Q ss_pred             HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEE-C--C
Q ss_conf             5568888521-43311168854344687448871158899999-----840013340021053445682699998-9--9
Q gi|254780696|r  148 QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLL-N--G  218 (316)
Q Consensus       148 ~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi-~--g  218 (316)
                      ++.++.++.| ||++||.+|.||+|+..+. +...+.+.++..     ...+..++++.+|++...+  +-|-++ |  |
T Consensus       144 ea~~~a~~iGyPViIKas~ggGGrGmriv~-~~~el~~~~~~~~~ea~~~f~~~~v~iE~~l~~~rh--iEvqv~~D~~g  220 (449)
T 2w70_A          144 KNRAIAKRIGYPVIIKASGGGGGRGMRVVR-GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRH--VEIQVLADGQG  220 (449)
T ss_dssp             HHHHHHHHHCSSEEEEETTCCTTTTCEEEC-SHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEE--EEEEEEECTTS
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH--HHEEEEECCCC
T ss_conf             999999866996688521121224638986-816679999999999998469985786101047141--11467743899


Q ss_pred             EEEEEEEEECCCCCCCC-CCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE--CC--EEEEEECCCCH
Q ss_conf             88632122045686000-000147311100778999----99999999999849879999511--78--78898368830
Q gi|254780696|r  219 KPVGAVNRIPSEVDNRS-NIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFTGIDVI--GD--YITEINVTSPT  289 (316)
Q Consensus       219 ~~v~a~~R~~~~~~~r~-Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii--g~--~i~EvNvtsP~  289 (316)
                      .+++...|--   ++.. +-.....+-...++++.+    +.+.+++..+.-.|+  +-|.++  ++  |++|||-=...
T Consensus       221 ~~i~l~erdc---s~qrr~qk~ieeaP~~~l~~~~~~~~~~~a~~la~~~~y~g~--~tvEfl~~~~~~yflEvN~R~qv  295 (449)
T 2w70_A          221 NAIYLAERDC---SMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGA--GTFEFLFENGEFYFIEMNTRIQV  295 (449)
T ss_dssp             CEEEEEEEEE---EEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEE--EEEEEEEETTEEEEEEEECSCCT
T ss_pred             CEEEECCCCC---CCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CEEEEEEECCEEEEEECCCCCCC
T ss_conf             7501246245---202333662457678879867899999999999997694054--05899998997999832146665


Q ss_pred             HHHHHHHHCCCCHHHHHHH
Q ss_conf             3788997519998999999
Q gi|254780696|r  290 CIREIHRNGGENVASLFWD  308 (316)
Q Consensus       290 g~~~~~~~~~~~i~~~i~d  308 (316)
                      ...=.+.+||+|+.+.-+.
T Consensus       296 ehpvte~vtGvdlv~~qi~  314 (449)
T 2w70_A          296 EHPVTEMITGVDLIKEQLR  314 (449)
T ss_dssp             THHHHHHHHCCCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHH
T ss_conf             6540110008379999999


No 42 
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=98.92  E-value=2.1e-09  Score=80.65  Aligned_cols=203  Identities=20%  Similarity=0.223  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCC------C-
Q ss_conf             679999999988988999954124899989999999999807774126504644352100636688328862------2-
Q gi|254780696|r   23 STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPF------N-   95 (316)
Q Consensus        23 TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~------d-   95 (316)
                      ++-.+=++-..|..-+-..++.||.+.+|.++..+                   .--+...|+|+=|.|--|      . 
T Consensus       229 n~~yfEha~LAr~lG~~LVeg~DL~vrdg~v~~kt-------------------~~Gl~~VDviyRRvdd~~lDple~~~  289 (474)
T 3n6x_A          229 NSAYFEHAFIAQQMGIELVEGQDLFVRNNAVYMRT-------------------TEGPKRVDVIYRRIDDDFIDPLSFRP  289 (474)
T ss_dssp             STTHHHHHHHHHHHTCEEECGGGEEECSSCEEECC-------------------TTCCEEECEEEECSCGGGSCTTTSCT
T ss_pred             CHHHHHHHHHHHHCCCEEECCCCEEEECCEEEEEE-------------------CCCCEEEEEEEEECCCCCCCCCCCCC
T ss_conf             71788899998657814753666699999899995-------------------89983999999845721135324576


Q ss_pred             HHHHHHHHHHHHHCCC-CEEECCHHHHHHCCCHHHHHHHHH------------HCCCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             4799999999862358-504117488752565034334543------------044310003724556888852143311
Q gi|254780696|r   96 MHYITSTYLLEKINPE-TLIVNNPFWIRNSPEKIFVTEFSE------------LMPPTLISRDITQITRFYLEMKDIIIK  162 (316)
Q Consensus        96 ~~yi~~~~~Le~~~~~-~~viN~p~~i~~~~eKl~~~~~~~------------~~P~T~vt~~~~~~~~f~~~~~~vViK  162 (316)
                      .+.+..--+++.+..| +.++|.|.+- -..+|-....+|.            ...+|+.+.++++....+++....|+|
T Consensus       290 ds~lgV~GL~~a~r~G~V~iaNa~Gsg-vle~kal~aflp~~~~~~LgE~~~l~~v~T~w~~~~~~~~~Vl~~~~~lViK  368 (474)
T 3n6x_A          290 DSMLGVPGLLSVYRNGGVTLANAVGTG-VADDKDTYIYVPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVK  368 (474)
T ss_dssp             TCSSSCTTHHHHHHTTSCEEESCTTTH-HHHSTTTGGGHHHHHHHHHCSCCSSEECCCEETTSHHHHHHHHHSGGGEEEE
T ss_pred             CCCCCCHHHHHHHHCCCEEEEECCCCC-CCCCHHHHHHHHHHHHHHCCCCHHCCCCCEECCCCHHHHHHHHHCCCCCEEE
T ss_conf             540014147764105987996077744-4356579987789999855773211676423169878999998365330550


Q ss_pred             CCCCCCCCCEEEECCCCC-CHHHHHHHHHHHCCCCCCEEECCCCC-----CCC-------CEEEEEECCE---EE-EEEE
Q ss_conf             168854344687448871-15889999984001334002105344-----568-------2699998998---86-3212
Q gi|254780696|r  163 PLYGNGGTGVFRITLGDR-NFSSLIEMLFEKYPEPLMIQSYLPQI-----RDG-------DKRILLLNGK---PV-GAVN  225 (316)
Q Consensus       163 Pl~g~~G~gV~~i~~~~~-~~~~~~e~~~~~~~~~ii~Qefi~~~-----~~g-------D~Rv~vi~g~---~v-~a~~  225 (316)
                      |.++++|.|+..-....+ ....+.+.+..+ ...+++|++++-.     .+|       |.|++++.|+   +. |++.
T Consensus       369 p~~~~gg~g~~~G~~~s~~e~~~~~~~i~~~-P~~yVaQe~v~~st~P~~~~g~l~pr~v~lR~f~~~g~~~~vmpGgL~  447 (474)
T 3n6x_A          369 EVQGSGGYGMLVGPAASKQELEDFRQRILAN-PANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSLVPGALC  447 (474)
T ss_dssp             ECCCE-----EEGGGCCHHHHHHHHHHHHHS-GGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSSEEECSCCEE
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCEEECCEEEECEEEEEEEEEECCEEEEECCCEE
T ss_conf             4677788776455538999999999999858-215796330576668768899764333368899998994699769413


Q ss_pred             EECC-CCCCCCCCCCCCCEEEE
Q ss_conf             2045-68600000014731110
Q gi|254780696|r  226 RIPS-EVDNRSNIHAGGKAELT  246 (316)
Q Consensus       226 R~~~-~~~~r~Nl~~Gg~~~~~  246 (316)
                      |++. .|+...|.++||...-+
T Consensus       448 Rva~~~~~~~vn~~~Gg~sKDt  469 (474)
T 3n6x_A          448 RVALREGSLVVNSSQGGGTKDT  469 (474)
T ss_dssp             EEECSTTCCCCSTTSSEEEECE
T ss_pred             EEECCCCCEEEECCCCCCCCCE
T ss_conf             7226899726865899865544


No 43 
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP, structural genomics; HET: ATP; 2.50A {Thermococcus kodakarensis KOD1} SCOP: c.30.1.8 d.142.1.9
Probab=98.82  E-value=2.4e-08  Score=73.71  Aligned_cols=252  Identities=14%  Similarity=0.125  Sum_probs=126.8

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE-E--HHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf             33189970998884847646799999999889889999-5--41248999899999999998077741265046443521
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY-T--PDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL   80 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~-~--~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L   80 (316)
                      .++|+.+         ...|.+.++++|++.|++.-.+ +  |...+-.-             +-.+.+|-+.  ....+
T Consensus         2 ~~~i~~~---------~shsa~~i~~~Ak~~G~~Tv~i~~~~~e~~~~~~-------------~~aDe~~~~e--~~~~i   57 (320)
T 2pbz_A            2 SLIVSTI---------ASHSSLQILLGAKKEGFKTRLYVSPKRRPFYSSL-------------PIVDDLVVAE--EMTSI   57 (320)
T ss_dssp             --CEEEE---------SSTTHHHHHHHHHHTTCCEEEEECTTTHHHHHTC-------------TTCSEEEECS--CSCCT
T ss_pred             CCEEEEE---------EEHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-------------CCCCEEEEHH--HHHHH
T ss_conf             7289999---------7478999999999839959999778854346883-------------5287898755--69988


Q ss_pred             HHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH
Q ss_conf             006366883288622479999999986235-8504117488752565034334543----04431000372455688885
Q gi|254780696|r   81 SQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE  155 (316)
Q Consensus        81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~  155 (316)
                      .+-|.|++    |+-..--+.  ..+.+++ ++.++-+|.+++.+.||...-++..    ++|+......        ++
T Consensus        58 ~~~~~I~~----~~g~~~~~~--~~~~le~~gi~~~G~~~~l~~~~dk~~~~~~l~~~GIp~p~~~~~~~--------~~  123 (320)
T 2pbz_A           58 LNDDGIVV----PHGSFVAYL--GIEAIEKAKARFFGNRRFLKWETTFELQDKALEGAGIPRVEVVEPED--------AK  123 (320)
T ss_dssp             TCCSSBCC----CBTTHHHHS--CHHHHHTCCSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBCCSCC--------CC
T ss_pred             HCCCEEEC----CCCCHHHHH--HHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCH--------HC
T ss_conf             49998996----878678999--99999986997258689999877899999999976999765445310--------02


Q ss_pred             H-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE--CC--EEEEEEEEECCC
Q ss_conf             2-143311168854344687448871158899999840013340021053445682699998--99--886321220456
Q gi|254780696|r  156 M-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL--NG--KPVGAVNRIPSE  230 (316)
Q Consensus       156 ~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi--~g--~~v~a~~R~~~~  230 (316)
                      . -||++||.+|.||+|++++.. ...+...++.     ...+.+|+|+....- -...+.-  ..  ++++...|... 
T Consensus       124 ig~PViVKp~~g~GGrG~~iv~~-~eel~~~~~~-----~~~~~ie~~v~g~~~-~~~~~~~~~~~~~~i~~~~~~~~~-  195 (320)
T 2pbz_A          124 PDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL-----EEPYRVERFIPGVYL-YVHFFYSPILERLELLGVDERVLI-  195 (320)
T ss_dssp             SSCCEEEECC------------C-EECSCCCC---------CCEEEECCCSCEE-EEEEEEETTTTEEEEEEEEEEEET-
T ss_pred             CCCCEEEEECCCCCCCEEEEEEC-HHHHHHHHHH-----HHHHHHHCCCCCHHE-EEEEEEEEEEECCCCEEEEECEEE-
T ss_conf             68747999755788730699828-7999999999-----998876502667203-888666412404431487506688-


Q ss_pred             CCC--------CCCCCCCCCEEEEECCHH----HHHHHHHHHHHHHHC---CCE-EEEEEEE-CC--EEEEEECCCCHH-
Q ss_conf             860--------000001473111007789----999999999999984---987-9999511-78--788983688303-
Q gi|254780696|r  231 VDN--------RSNIHAGGKAELTKLTKI----DLDICKRIGESLRER---GLF-FTGIDVI-GD--YITEINVTSPTC-  290 (316)
Q Consensus       231 ~~~--------r~Nl~~Gg~~~~~~lt~~----~~~i~~~~~~~L~~~---gl~-~~GiDii-g~--~i~EvNvtsP~g-  290 (316)
                      .+.        +.....|..  ++.++++    ..++++++...++..   |+. ...|.++ ++  |++|||.==++| 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~--p~~l~~~~~~~i~e~a~~~~~a~~~l~~~G~~G~~~vq~~~d~~~~viEinpRi~Gg~  273 (320)
T 2pbz_A          196 ADGNARWPVKPLPYTIVGNR--AIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALHFAYDGSFKAIGIASRIDGGS  273 (320)
T ss_dssp             TCSSSSSCCSCCCCCEEEEE--ECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEEEECSSSCEEEEEESSBCSGG
T ss_pred             ECCEEEECCCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC
T ss_conf             87640122203564399806--9899989999999999999999755115880546899988489799999878877897


Q ss_pred             ---HHHHHHHCCCCHH
Q ss_conf             ---7889975199989
Q gi|254780696|r  291 ---IREIHRNGGENVA  303 (316)
Q Consensus       291 ---~~~~~~~~~~~i~  303 (316)
                         .+--+..+|.+++
T Consensus       274 ~~~~p~t~~~~g~~l~  289 (320)
T 2pbz_A          274 NADHWYSELYWGERLS  289 (320)
T ss_dssp             GSCCCCHHHHSSSCCC
T ss_pred             CCCCCCEEEEECCCCH
T ss_conf             7766642106667546


No 44 
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.77  E-value=4.5e-07  Score=65.35  Aligned_cols=270  Identities=15%  Similarity=0.201  Sum_probs=146.6

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf             96533189970998884847646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL   80 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L   80 (316)
                      |+. |||+++..-=        ---||++..++.++++|.+. ..=....   .+.+..    -+....|.       ..
T Consensus        13 ~~~-~rVLviGsGg--------REHAia~~l~~s~~~v~~~p-gN~g~~~---~~~~~~----~~~~~~~~-------~~   68 (412)
T 1vkz_A           13 MKA-VRVHILGSGG--------REHAIGWAFAKQGYEVHFYP-GNAGTKR---DGTNHP----YEGEKTLK-------AI   68 (412)
T ss_dssp             ----CEEEEEECSH--------HHHHHHHHHHHTTCEEEEEE-CCTTGGG---TSEECC----CCTHHHHH-------TS
T ss_pred             HHC-CEEEEECCCH--------HHHHHHHHHHCCCCCEEEEC-CCHHHHH---HCCCCC----CCHHHHHH-------HH
T ss_conf             426-7899999788--------99999999856998089968-9878874---254468----50078776-------40


Q ss_pred             HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH
Q ss_conf             0063668832886224799999999862358504117488752565034334543----044310003724556888852
Q gi|254780696|r   81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM  156 (316)
Q Consensus        81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~  156 (316)
                      .+.|.+++--.-|.- .++     -+... . .+--+..+.+...+|.++-+|.+    ++|+-...++.+++.+|++++
T Consensus        69 ~~~dlvvvgpE~pL~-~gl-----~d~~~-~-vfGPs~~aA~LE~SK~faK~~m~~~~IPta~~~~f~~~~ea~~~~~~~  140 (412)
T 1vkz_A           69 PEEDIVIPGSEEFLV-EGV-----SNWRS-N-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKF  140 (412)
T ss_dssp             CSSCEECCSSGGGTC-C----------CT-T-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTS
T ss_pred             CCCCEEEECCCHHHH-HHH-----HHCCC-C-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             479989989789999-778-----87588-7-449798999988759999999997088988511026799999998717


Q ss_pred             H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCEEECCCCCCCCCEEEEEE-CC-EEE--EE---E
Q ss_conf             1-43311168854344687448871158899999840----013340021053445682699998-99-886--32---1
Q gi|254780696|r  157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK----YPEPLMIQSYLPQIRDGDKRILLL-NG-KPV--GA---V  224 (316)
Q Consensus       157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~----~~~~ii~Qefi~~~~~gD~Rv~vi-~g-~~v--~a---~  224 (316)
                      + |+|+||-...+|+||+.+...++....+.+.+...    ....++++||+...   +.-++++ || .++  ..   +
T Consensus       141 ~~PvVIKadgla~GKGV~i~~~~~ea~~~~~~~~~~~~~~~~~~~vvIEe~l~G~---E~S~~~~~dG~~~~~lp~~qD~  217 (412)
T 1vkz_A          141 SPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGN---ELSAMAVVNGRNFVILPFVRDY  217 (412)
T ss_dssp             CSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCSE---EEEEEEEEETTEEEECCCCEEC
T ss_pred             CCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCC---EEEEEEEECCCEEEECCCCCCC
T ss_conf             9978997086678886489841576899999860242026763025547555796---2379999438959989540023


Q ss_pred             EEECCCCCCCCCCCCCC--CEEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECCC--CH
Q ss_conf             22045686000000147--31110077899----999999999999849879999511-------78788983688--30
Q gi|254780696|r  225 NRIPSEVDNRSNIHAGG--KAELTKLTKID----LDICKRIGESLRERGLFFTGIDVI-------GDYITEINVTS--PT  289 (316)
Q Consensus       225 ~R~~~~~~~r~Nl~~Gg--~~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvts--P~  289 (316)
                      .|. -.||-=.|  .||  ...+..+...+    .++.......|.+.|+.|.|+=.+       |+||+|+|+--  |.
T Consensus       218 Kr~-~dgd~Gpn--TGGMGa~sp~~~~~~~~~~~~~ii~~~~~~l~~eg~~y~GiLy~glmit~~gpkvlE~N~RfGDPE  294 (412)
T 1vkz_A          218 KRL-MDGDRGPN--TGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPE  294 (412)
T ss_dssp             CEE-ETTTEEEE--CSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEESSCCTTH
T ss_pred             CCC-CCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCC
T ss_conf             110-16999999--887876478775567888889999999999997499667155135587189856999633558950


Q ss_pred             HHHHHHHHCCCCHHHHHHHH
Q ss_conf             37889975199989999999
Q gi|254780696|r  290 CIREIHRNGGENVASLFWDG  309 (316)
Q Consensus       290 g~~~~~~~~~~~i~~~i~d~  309 (316)
                       .+-+-.+...|+...+++.
T Consensus       295 -~q~ll~ll~~dl~~~~~~~  313 (412)
T 1vkz_A          295 -TEVIVTLNPEGFVNAVLEG  313 (412)
T ss_dssp             -HHHHHHHCHHHHHHHHHHH
T ss_pred             -HHHEECCCHHHHHHHHHHH
T ss_conf             -4210023504679999998


No 45 
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.77  E-value=3.3e-07  Score=66.24  Aligned_cols=280  Identities=13%  Similarity=0.170  Sum_probs=154.3

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHH--CCCEEEEEEHHHEEEECCEEEEEEEEEEEECCC-CCEEEECCCCCCCH
Q ss_conf             331899709988848476467999999998--898899995412489998999999999980777-41265046443521
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQV--RGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKK-EQYYSLGEEKIIDL   80 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~--RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~-~~~f~~~~~~~~~L   80 (316)
                      .|||+++.+-=.        --||++...+  +..++|++ |.+-...   ..+.+..+.+.... ..-.+..+     -
T Consensus         3 ~MkvLviGsGgR--------EhAia~~l~~s~~~~~v~~~-pgN~g~~---~~~~~~~~~~~~~d~~~i~~~~~-----~   65 (431)
T 3mjf_A            3 AMNILIIGNGGR--------EHALGWKAAQSPLADKIYVA-PGNAGTA---LEPTLENVDIAATDIAGLLAFAQ-----S   65 (431)
T ss_dssp             CEEEEEEECSHH--------HHHHHHHHTTCTTEEEEEEE-ECCHHHH---HCTTCEECCCCTTCHHHHHHHHH-----H
T ss_pred             CCEEEEECCCHH--------HHHHHHHHHHCCCCCEEEEE-CCCHHHH---HHCCCEEECCCCCCHHHHHHHHH-----H
T ss_conf             778999897899--------99999999759898979996-8972665---30665452468669999999999-----8


Q ss_pred             HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCH-HHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH
Q ss_conf             00636688328862247999999998623585041174-88752565034334543----04431000372455688885
Q gi|254780696|r   81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNP-FWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE  155 (316)
Q Consensus        81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p-~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~  155 (316)
                      ...|.+++=-.-|.- .++.-  .|+.  .+..|+=.+ .+-+.-.+|.|+-+|-+    ++|+-...+|.+++.+|+++
T Consensus        66 ~~idlvivgpe~pL~-~Gl~D--~l~~--~gi~vfGP~~~aA~lE~sK~fak~~m~~~~IPta~~~~~~~~~~a~~~~~~  140 (431)
T 3mjf_A           66 HDIGLTIVGPEAPLV-IGVVD--AFRA--AGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQ  140 (431)
T ss_dssp             TTEEEEEECSHHHHH-TTHHH--HHHH--TTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHH-HHHHH--HHHH--CCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHC
T ss_conf             299989989748988-77999--9974--799333877888787761999999987526588746995899999987525


Q ss_pred             HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-----CCCCCCEEECCCCCCCCCEEEEEE-CCE-EEE--E--
Q ss_conf             21-43311168854344687448871158899999840-----013340021053445682699998-998-863--2--
Q gi|254780696|r  156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK-----YPEPLMIQSYLPQIRDGDKRILLL-NGK-PVG--A--  223 (316)
Q Consensus       156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~-----~~~~ii~Qefi~~~~~gD~Rv~vi-~g~-~v~--a--  223 (316)
                      ++ |+|+||-.-++|+||+... +.......++.+...     ....+++|||+.   +-++-++.+ ||+ ++.  .  
T Consensus       141 ~~~p~VIK~dgla~GKGV~v~~-~~~ea~~a~~~~~~~~~~g~~g~~vvIEE~L~---G~E~S~~a~~dG~~~~~lp~~q  216 (431)
T 3mjf_A          141 KGAPIVIKADGLAAGKGVIVAM-TQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD---GEEASFIVMVDGENVLPMATSQ  216 (431)
T ss_dssp             HCSSEEEEESSSCTTCSEEEEC-SHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC---SEEEEEEEEEESSCEEECCCBE
T ss_pred             CCCCEEEEECCCCCCCCCEEEE-CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC---CEEEEEEEEECCCEEEEEECCC
T ss_conf             6987799716667877626752-11688998999875113456455576212067---5389999997799599532300


Q ss_pred             -EEEECCCCCCCCCCCCCCCEEEEEC-CHHH-----HHHHHHHHHHHHHCCCEEEEEEEE-------C-CEEEEEECC--
Q ss_conf             -1220456860000001473111007-7899-----999999999999849879999511-------7-878898368--
Q gi|254780696|r  224 -VNRIPSEVDNRSNIHAGGKAELTKL-TKID-----LDICKRIGESLRERGLFFTGIDVI-------G-DYITEINVT--  286 (316)
Q Consensus       224 -~~R~~~~~~~r~Nl~~Gg~~~~~~l-t~~~-----~~i~~~~~~~L~~~gl~~~GiDii-------g-~~i~EvNvt--  286 (316)
                       +.|. -+||.=-|.--=|...+.+. +++.     .++...+.+.|++.|+.|.|+=.+       | +||+|.|+-  
T Consensus       217 DhKR~-~dgD~GPNTGGMGa~sp~p~~~~~l~~~i~~~ii~p~~~~l~~~g~~y~GvLy~glMlt~~G~pkViEyN~RfG  295 (431)
T 3mjf_A          217 DHKRV-GDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFG  295 (431)
T ss_dssp             ECCEE-ETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTSCEEEEEECGGGS
T ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEECC
T ss_conf             15222-47999998898864688987898999999875001177788635995212353115883689878999873037


Q ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             8303788997519998999999998
Q gi|254780696|r  287 SPTCIREIHRNGGENVASLFWDGIE  311 (316)
Q Consensus       287 sP~g~~~~~~~~~~~i~~~i~d~ie  311 (316)
                      .|. .+-+--..+.|+...+.+...
T Consensus       296 DPE-~q~ll~~l~~dl~e~~~~~~~  319 (431)
T 3mjf_A          296 DPE-TQPIMLRMRSDLVELCLAGTQ  319 (431)
T ss_dssp             TTT-HHHHHHHBCSCHHHHHHHHHT
T ss_pred             CCC-HHHHHHHCCCCHHHHHHHHHC
T ss_conf             840-445565316748999999863


No 46 
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.74  E-value=1.1e-07  Score=69.40  Aligned_cols=192  Identities=16%  Similarity=0.118  Sum_probs=116.4

Q ss_pred             CCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCC-C-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf             585041-17488752565034334543----0443-1-00037245568888521-433111688543446874488711
Q gi|254780696|r  110 PETLIV-NNPFWIRNSPEKIFVTEFSE----LMPP-T-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRN  181 (316)
Q Consensus       110 ~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~-T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~  181 (316)
                      .|..+| =+|.+|+.+.||...-++.+    +++| + -..+|.+++.++.++.| |+++||.+|.||+|+..+. +..+
T Consensus        98 ~gi~~iGP~~~~i~~~~dK~~~k~~~~~~gvp~~p~~~~~~~~~~~~~~~~~~iG~Pv~lKa~~gggGkG~~~v~-~~~~  176 (681)
T 3n6r_A           98 EGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAW-NDQE  176 (681)
T ss_dssp             TTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC--------------------------------------------
T ss_pred             CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CCHH
T ss_conf             889498979999987249999999999869892989787779999999998764997899964368857227983-7035


Q ss_pred             HHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf             58899999-----8400133400210534456826999989---988632122045686000000147311100778999
Q gi|254780696|r  182 FSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL  253 (316)
Q Consensus       182 ~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~  253 (316)
                      +...++..     ...+..++++.+||+..+  .+-|-++.   |..++...|..+-  -|.+-..=..+-...++++.+
T Consensus       177 l~~~~~~~~~ea~~~~~~~~~~iE~~i~~~r--hievqv~~d~~G~~v~~~~r~csi--qr~~qk~ie~aPa~~~~~~~~  252 (681)
T 3n6r_A          177 AREGFQSSKNEAANSFGDDRIFIEKFVTQPR--HIEIQVLCDSHGNGIYLGERECSI--QRRNQKVVEEAPSPFLDEATR  252 (681)
T ss_dssp             --------------------------CCSCE--EEEEEEECCSSSCCEEEEEEECCC--EETTEECEEEESCSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCC--EEEEEEEEECCCCEEEEECCCCCC--CCCCCCEEEECCCCCCCHHHH
T ss_conf             2455556788999725998689998212230--117899998789889994244765--417852699758999999999


Q ss_pred             ----HHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCCH-HHHHHHHHCCCCHHHHHHHH
Q ss_conf             ----99999999999849879999511----7-878898368830-37889975199989999999
Q gi|254780696|r  254 ----DICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSPT-CIREIHRNGGENVASLFWDG  309 (316)
Q Consensus       254 ----~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP~-g~~~~~~~~~~~i~~~i~d~  309 (316)
                          +.+.+++..|.-.|+.  +|-++    | -|++|+| |=+. .-.=.+..+|+|+...-+..
T Consensus       253 ~~~~~~a~~~a~~~~y~g~~--tvEf~~~~~~~~~f~E~n-~R~~~~~~~te~~~~~dl~~~~~~~  315 (681)
T 3n6r_A          253 RAMGEQAVALAKAVGYASAG--TVEFIVDGQKNFYFLEMN-TRLQVEHPVTELITGVDLVEQMIRV  315 (681)
T ss_dssp             HHHHHHHHHHHHTTTCCSEE--EEEEEECTTSCCCCCEEE-CSCCTTHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCC--EEEEEEECCCCEEEEEEE-CCCCCCCCEEEEECCCCHHHHHHHH
T ss_conf             99999999999985987544--499998069968999960-3567887457775095589999998


No 47 
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=98.63  E-value=5.6e-07  Score=64.72  Aligned_cols=189  Identities=14%  Similarity=0.212  Sum_probs=112.0

Q ss_pred             CCEEE-CCHHHHHHCCCHHHHHHHHH----H-CCCC-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCH
Q ss_conf             85041-17488752565034334543----0-4431-00037245568888521-4331116885434468744887115
Q gi|254780696|r  111 ETLIV-NNPFWIRNSPEKIFVTEFSE----L-MPPT-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNF  182 (316)
Q Consensus       111 ~~~vi-N~p~~i~~~~eKl~~~~~~~----~-~P~T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~  182 (316)
                      |..+| =+|++|+.+.+|..+-.+.+    + +|-| -+..|.+++.++.++.| ||++|+..|.||+|+..+ .+..++
T Consensus       118 g~~figp~~~~~~~~g~k~~~r~~a~~~~vp~~~g~~~~~~~~~~~~~~~~~ig~pv~~k~~~gggg~g~~~~-~~~~~~  196 (1165)
T 2qf7_A          118 GIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVI-RSEADL  196 (1165)
T ss_dssp             TCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC-----------------------------------------------
T ss_pred             CCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEE-CCHHHH
T ss_conf             9989997999999832999999999985989888978888999999999986499789997888997752697-899999


Q ss_pred             HHHHHHHH-----HHCCCCCCEEECCCCCCCCCEEEEEE-C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf             88999998-----40013340021053445682699998-9--9886321220456860000001473111007789999
Q gi|254780696|r  183 SSLIEMLF-----EKYPEPLMIQSYLPQIRDGDKRILLL-N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLD  254 (316)
Q Consensus       183 ~~~~e~~~-----~~~~~~ii~Qefi~~~~~gD~Rv~vi-~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~  254 (316)
                      .+.++...     ..+...+++.+||+..++  +-|-++ |  |.+++-..|.-+-  =|.|-..=..+-...|+++.++
T Consensus       197 ~~~~~~~~~~~~~~f~~~~v~~e~~~~~~rh--ievq~~~d~~g~~~~~~~r~cs~--q~~~qk~ie~~p~~~l~~~~~~  272 (1165)
T 2qf7_A          197 AKEVTEAKREAMAAFGKDEVYLEKLVERARH--VESQILGDTHGNVVHLFERDCSV--QRRNQKVVERAPAPYLSEAQRQ  272 (1165)
T ss_dssp             -----------------------CCCSSEEE--EEEEEEECTTSCEEEEEEEEEEE--EETTEEEEEEESCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCEE--EEEEEEECCCCCEEEEECCCCCC--CCCCCEEEEECCCCCCCHHHHH
T ss_conf             9999999999997269985899985288708--99999971889889971788888--7588623567779889999999


Q ss_pred             ----HHHHHHHHHHHCCCE-EEEEEEE----CC--EEEEEECCCCHHHH-HHHHHCCCCHHHHHHH
Q ss_conf             ----999999999984987-9999511----78--78898368830378-8997519998999999
Q gi|254780696|r  255 ----ICKRIGESLRERGLF-FTGIDVI----GD--YITEINVTSPTCIR-EIHRNGGENVASLFWD  308 (316)
Q Consensus       255 ----i~~~~~~~L~~~gl~-~~GiDii----g~--~i~EvNvtsP~g~~-~~~~~~~~~i~~~i~d  308 (316)
                          .|.++++.+   |.. -..|.++    .+  |++||| |=+.-=. =-+.++|+|+.+.-+.
T Consensus       273 ~~~~~a~~~~~~~---~y~~~gtvef~~~~~~~~~~f~E~n-~R~qveh~vte~~~g~dlv~~~~~  334 (1165)
T 2qf7_A          273 ELAAYSLKIAGAT---NYIGAGTVEYLMDADTGKFYFIEVN-PRIQVEHTVTEVVTGIDIVKAQIH  334 (1165)
T ss_dssp             HHHHHHHHHHHHT---TCCEEEEEEEEEETTTTEEEEEEEE-CSCCTTHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHC---CCEEEEEEEEEEECCCCCEEEEEEE-CCCCCCCCCEEEEECCHHHHHHHH
T ss_conf             9999999999864---9535306999998689968999966-898866532354546506899999


No 48 
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.55  E-value=1.9e-06  Score=61.24  Aligned_cols=257  Identities=15%  Similarity=0.101  Sum_probs=132.0

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC
Q ss_conf             33189970998884847646799999999889889999541248999899999999998077741265046443521006
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM   83 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f   83 (316)
                      ||+|+++..-        --..+|+++|++.|+++.+++++.=+-        +..+     ...++.... ..--....
T Consensus         1 ~~tigIlG~G--------qL~~ml~~aAk~lGi~v~v~d~~~~~p--------a~~v-----Ad~~~d~~~-l~~~a~~~   58 (365)
T 2z04_A            1 MLTVGILGGG--------QLGWMTILEGRKLGFKFHVLEDKENAP--------ACRV-----ADRCFRTGQ-ISEFVDSC   58 (365)
T ss_dssp             -CEEEEECCS--------HHHHHHHHHHGGGTCEEEEECSSSSCH--------HHHH-----SSEEECGGG-HHHHHHHC
T ss_pred             CCEEEEECCC--------HHHHHHHHHHHHCCCEEEEEECCCCCC--------HHHH-----CCHHCCHHH-HHHHHHCC
T ss_conf             9899998678--------999999999997899899995699897--------6672-----615427999-99998449


Q ss_pred             CEEEE-ECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHHH
Q ss_conf             36688-32886224799999999862358504117488752565034334543----04431000372455688885214
Q gi|254780696|r   84 DVILI-RQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMKD  158 (316)
Q Consensus        84 D~i~i-R~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~~  158 (316)
                      |+|-. .-+.|+        -.|+.+..  .+..+|.++..+.+|...-.+..    ..|......+.+..........+
T Consensus        59 DvIt~e~E~i~~--------~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (365)
T 2z04_A           59 DIITYEFEHIKD--------EVLEKCES--KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIKRDEIIDALKSFKLP  128 (365)
T ss_dssp             SEEEESSSCCCH--------HHHHHHTT--TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC--------------C
T ss_pred             CEEEECCCCCCH--------HHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             999987046767--------99997365--77889029999888999997543039972111233256654222210566


Q ss_pred             HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCC
Q ss_conf             3311168854344687448871158899999840013340021053445682699998---9988632122045686000
Q gi|254780696|r  159 IIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRS  235 (316)
Q Consensus       159 vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~  235 (316)
                      .++||..+++|.|...+.............  .....++++.+|++  ....+-++++   +|++...    |.    +-
T Consensus       129 ~i~k~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~ivEe~i~--~~~Eisv~v~rd~~g~~~~~----p~----~e  196 (365)
T 2z04_A          129 VVIKAEKLGYDGKGQYRIKKLEDANQVVKN--HDKEESFIIEEFVK--FEAEISCIGVRDREGKTYFY----PQ----PF  196 (365)
T ss_dssp             EEEECC--------------------------------CEEEECCC--CSEEEEEEEEECTTCCEEEC----CE----EE
T ss_pred             CEEEEECCCCCCCCCEEEEEHHHHHHHHHH--HCCCCCEEEEEEEC--CCEEEEEEEEECCCCCEEEE----CC----CC
T ss_conf             236750122128985699734566677664--03788789998414--73688899998189988984----68----35


Q ss_pred             CCCCCC----CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEE-E---CC-EEEEEECCCC--HHHHHHHHHCCCCHHH
Q ss_conf             000147----3111007789999999999999984987999951-1---78-7889836883--0378899751999899
Q gi|254780696|r  236 NIHAGG----KAELTKLTKIDLDICKRIGESLRERGLFFTGIDV-I---GD-YITEINVTSP--TCIREIHRNGGENVAS  304 (316)
Q Consensus       236 Nl~~Gg----~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDi-i---g~-~i~EvNvtsP--~g~~~~~~~~~~~i~~  304 (316)
                      |.+..+    ...+....++...++.+++..+...|  -.++.+ +   |. |+.|+| +-|  +|... ...++.+.-.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~g--~~~~e~f~~~~~~~~vnEia-pR~hnsg~~t-~~~~~~sqfe  272 (365)
T 2z04_A          197 NKHEEGILIYNYVPYAKLKEAEEITKRLMELLDIVG--VFTVEFFLLKDGRVLINEFA-PRVHNTGHWT-LDGAYTSQFE  272 (365)
T ss_dssp             EEEETTEEEEEEEEEECCHHHHHHHHHHHHHTTCCE--EEEEEEEECTTSCEEEEEEE-SSCCGGGTTH-HHHBSSCHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCEEEEEEECCCCEEEEEEC-CCCCCEEEEE-ECCCCCCHHH
T ss_conf             088667430466886888899988888787634677--51589999069829999977-8875334688-5234579999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780696|r  305 LFWD  308 (316)
Q Consensus       305 ~i~d  308 (316)
                      ..+-
T Consensus       273 ~~lr  276 (365)
T 2z04_A          273 NLLR  276 (365)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999


No 49 
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A
Probab=98.04  E-value=3.3e-05  Score=53.11  Aligned_cols=200  Identities=13%  Similarity=0.104  Sum_probs=99.6

Q ss_pred             EEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEH-HHEEEECC-EEE-EEEEEEEEECCCCCEEEECCCCCC-----
Q ss_conf             8997099888484764679999999988988999954-12489998-999-999999980777412650464435-----
Q gi|254780696|r    7 IAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTP-DQLYMRDS-KIY-ANTQPLSLDEKKEQYYSLGEEKII-----   78 (316)
Q Consensus         7 I~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~-~dL~~~~g-~v~-A~~~~i~i~~~~~~~f~~~~~~~~-----   78 (316)
                      +.+++++-+.-+  .-|+..|+..|++.|++..++.+ .++.+... ..+ ...++|      ...|++-..+.+     
T Consensus       381 ~v~~~~~~~~ED--~~t~~yL~~~a~qAG~~t~~i~~~d~i~~d~~g~f~D~~g~~I------d~vfKlyPwE~l~~e~~  452 (619)
T 2io8_A          381 FVHIMQDKDIEE--NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLV------NCVWKTWAWETAFDQIR  452 (619)
T ss_dssp             EEEEEECSCHHH--HHHHHHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBC------CEEEESSCHHHHHHHHH
T ss_pred             EEEEEECCCCCH--HHHHHHHHHHHHHCCCCEEEECCHHHEEECCCCCEECCCCCCH------HHHHHHHHHHHHHHHHH
T ss_conf             799995798640--7899999999998799778876135032768884889999788------89897534777766555


Q ss_pred             --CHHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCH-HHHH---HHHH--HCCCCEEECCHHHH
Q ss_conf             --21006366883288622479999999986235-85041174887525650-3433---4543--04431000372455
Q gi|254780696|r   79 --DLSQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEK-IFVT---EFSE--LMPPTLISRDITQI  149 (316)
Q Consensus        79 --~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eK-l~~~---~~~~--~~P~T~vt~~~~~~  149 (316)
                        ....+-..-.|.+-|-..     ..+++.+.. ++.++|.|-.+.- .+| ++++   .||.  ..-+|....+..  
T Consensus       453 ~~~~~~~~~~~~~~~~pe~~-----~~ll~~l~~~~v~~ieP~wk~ll-snKaiLalLWel~P~hp~LLpt~f~~~~~--  524 (619)
T 2io8_A          453 EVSDREFAAVPIRTGHPQNE-----VRLIDVLLRPEVLVFEPLWTVIP-GNKAILPILWSLFPHHRYLLDTDFTVNDE--  524 (619)
T ss_dssp             HC---CCSSCCCCSCCSSCC-----CCHHHHHTCTTCEEESCGGGGTT-TSTTHHHHHHHHSTTCTTCCCEESSCCHH--
T ss_pred             HHHHHHHHCCCCCCCCCCHH-----HHHHHHHHCCCEEEECHHHHHHH-HCHHHHHHHHHHCCCCCCCCCCCCCCCCH--
T ss_conf             43002330144343674136-----78999975187389661788754-24389999997678985424220474302--


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCC-CC---CEEEEEECCEEEEEEE
Q ss_conf             6888852143311168854344687448871158899999840013340021053445-68---2699998998863212
Q gi|254780696|r  150 TRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIR-DG---DKRILLLNGKPVGAVN  225 (316)
Q Consensus       150 ~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~-~g---D~Rv~vi~g~~v~a~~  225 (316)
                         . .....|.||++|.+|.||........-..+   .....+..+.|.|+|.+-.. +|   -+-++++||++.|...
T Consensus       525 ---~-~~~~yV~KPi~GREG~nV~I~~~~~~v~~~---t~g~y~~~~~IyQe~~~Lp~~~g~y~~iG~wvvgg~~aGigi  597 (619)
T 2io8_A          525 ---L-VKTGYAVKPIAGRCGSNIDLVSHHEEVLDK---TSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCL  597 (619)
T ss_dssp             ---H-HHHCEEEEETTCCTTTTCEEECTTSCEEEE---CCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEE
T ss_pred             ---H-HCCCEEECCCCCCCCCCEEEECCCCEEEEC---CCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCEEEEEEE
T ss_conf             ---2-138817667888888987996188606302---367778888599985688756898689989999999889999


Q ss_pred             EECC
Q ss_conf             2045
Q gi|254780696|r  226 RIPS  229 (316)
Q Consensus       226 R~~~  229 (316)
                      |...
T Consensus       598 Red~  601 (619)
T 2io8_A          598 RGDE  601 (619)
T ss_dssp             EEES
T ss_pred             ECCC
T ss_conf             5379


No 50 
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=97.72  E-value=0.0017  Score=41.93  Aligned_cols=188  Identities=10%  Similarity=-0.052  Sum_probs=100.3

Q ss_pred             EEEEEE-CCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH-EEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC
Q ss_conf             189970-9988848476467999999998898899995412-48999899999999998077741265046443521006
Q gi|254780696|r    6 NIAIQM-NHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ-LYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM   83 (316)
Q Consensus         6 kI~fim-Dpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d-L~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f   83 (316)
                      .+.|.. +..|..    -|+..|+..|++.|++.-++.+.| +.+..+               ..++...      -...
T Consensus       397 ~vh~~~~~~~ED~----~T~~yL~~~A~eAG~~t~~~~~~d~i~~~~~---------------g~f~D~~------g~~I  451 (652)
T 2vob_A          397 RVHFCVDEEREEQ----YTALYCMQAAEAVGLEGKLCILFDEFRFDDN---------------GHVVDSD------GVRV  451 (652)
T ss_dssp             EEEEEECSCHHHH----HHHHHHHHHHHHTTCEEEEEETTTTCEECTT---------------SCEECTT------SCBC
T ss_pred             EEEEEECCCCHHH----HHHHHHHHHHHHCCCCEEEEEEEEEEEECCC---------------CCEECCC------CCCH
T ss_conf             4999969982668----9999999999986986177410104657688---------------8788999------8485


Q ss_pred             CEEEEECCCCCCH---HH-----------------HHHHHHHHHH-CCCCEEECCHHHHHHCCCHHHHH---HHHH--HC
Q ss_conf             3668832886224---79-----------------9999999862-35850411748875256503433---4543--04
Q gi|254780696|r   84 DVILIRQDPPFNM---HY-----------------ITSTYLLEKI-NPETLIVNNPFWIRNSPEKIFVT---EFSE--LM  137 (316)
Q Consensus        84 D~i~iR~dPp~d~---~y-----------------i~~~~~Le~~-~~~~~viN~p~~i~~~~eKl~~~---~~~~--~~  137 (316)
                      +++| |.=|.-.+   .+                 +... .+... +.++.+||.|-.+.-.|-=++++   .||.  ..
T Consensus       452 ~~lf-KLYPWE~m~~d~~~~~~~~~~~~~~~~~~~v~l~-~~~l~~~~~v~~iEP~Wk~llsNKaiLalLWeL~P~HP~L  529 (652)
T 2vob_A          452 RNVW-KTWMWESAITDYYAAREERGENWKPSPKDKVRLC-DLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAI  529 (652)
T ss_dssp             CEEE-ECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHH-HHHSSSCTTSEEESCGGGGTTTSTTHHHHHHHHCTTCTTB
T ss_pred             HHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHCCCCCEEEECCHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf             6677-5511988764043110023322455642002233-3443134645895737997743548999999866898001


Q ss_pred             CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCC----CEEE
Q ss_conf             431000372455688885214331116885434468744887115889999984001334002105344568----2699
Q gi|254780696|r  138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDG----DKRI  213 (316)
Q Consensus       138 P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~g----D~Rv  213 (316)
                      -+|....+.     ++. ....|.||++|-.|.+|..+.... .  .+.+.--..+....|.|+|.+-...+    -+-+
T Consensus       530 Lpa~fe~~~-----~l~-~~~yV~KPi~GREG~nV~I~~~~g-~--v~~~~~g~Y~~~~~IyQe~~~Lp~~~g~y~~iG~  600 (652)
T 2vob_A          530 LKAEYELTD-----ELR-KHGYAKKPIVGRVGSNVIITSGDG-V--VHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGG  600 (652)
T ss_dssp             CCEESSCCH-----HHH-HHCEEEEECC------------------------------CEEEEECCC--CBTTBCCEEEE
T ss_pred             CCHHCCCCC-----CCC-CCCEEECCCCCCCCCCEEEECCCC-E--EEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEE
T ss_conf             703305654-----213-488474126655578869972896-3--8715788878787389971678776894279999


Q ss_pred             EEECCEEEEEEEEECC
Q ss_conf             9989988632122045
Q gi|254780696|r  214 LLLNGKPVGAVNRIPS  229 (316)
Q Consensus       214 ~vi~g~~v~a~~R~~~  229 (316)
                      +++||++.|...|...
T Consensus       601 wvVgge~aGlgiRed~  616 (652)
T 2vob_A          601 WMIGDAFSGTGIREDK  616 (652)
T ss_dssp             EEETTEEEEEEEEC--
T ss_pred             EEECCEEEEEEEEECC
T ss_conf             9999998799996069


No 51 
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42  E-value=7.3e-05  Score=50.86  Aligned_cols=85  Identities=20%  Similarity=0.265  Sum_probs=58.8

Q ss_pred             HCCCHHHHHHHHH----H-CCCC-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH----
Q ss_conf             2565034334543----0-4431-00037245568888521-4331116885434468744887115889999984----
Q gi|254780696|r  123 NSPEKIFVTEFSE----L-MPPT-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE----  191 (316)
Q Consensus       123 ~~~eKl~~~~~~~----~-~P~T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~----  191 (316)
                      ...||..+-++.+    + +|-+ -...|.+++..+.++.| |+++||.+|.||+|+..+. +..++...++...+    
T Consensus         5 amGDK~~Ak~la~~aGVP~vPg~~~~~~~~~ea~~~a~~iG~Pv~vKaa~GGGG~Gm~iv~-~~~el~~a~~~a~~eA~~   83 (108)
T 2cqy_A            5 SSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAW-DDEETRDGFRLSSQEAAS   83 (108)
T ss_dssp             CCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEES-SHHHHHHHHHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHH
T ss_conf             5658999999999939192888698889999999999871997498814567544027868-999999999998899997


Q ss_pred             -HCCCCCCEEECCCCCCC
Q ss_conf             -00133400210534456
Q gi|254780696|r  192 -KYPEPLMIQSYLPQIRD  208 (316)
Q Consensus       192 -~~~~~ii~Qefi~~~~~  208 (316)
                       -+...+++.+||+..++
T Consensus        84 ~Fgd~~v~iEk~i~~~RH  101 (108)
T 2cqy_A           84 SFGDDRLLIEKFIDNPRH  101 (108)
T ss_dssp             HTSSCCEEEEECCSSSSC
T ss_pred             CCCCCCEEEEEECCCCEE
T ss_conf             079997898870799808


No 52 
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase, structural genomics; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=95.36  E-value=0.048  Score=32.38  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=61.4

Q ss_pred             HHHHCCCCCCCCCEEEECCCCC--CHH--HHHHHHHHHCC---CCCCEEECCCCCC--CC---CEEEEEECCEEEEEEEE
Q ss_conf             3311168854344687448871--158--89999984001---3340021053445--68---26999989988632122
Q gi|254780696|r  159 IIIKPLYGNGGTGVFRITLGDR--NFS--SLIEMLFEKYP---EPLMIQSYLPQIR--DG---DKRILLLNGKPVGAVNR  226 (316)
Q Consensus       159 vViKPl~g~~G~gV~~i~~~~~--~~~--~~~e~~~~~~~---~~ii~Qefi~~~~--~g---D~Rv~vi~g~~v~a~~R  226 (316)
                      |++|-=.|+.|-||..+...++  +++  ..-.+...++.   ..+++||-++...  ++   +--|.++|+.++|...|
T Consensus       280 V~vKad~GTYGMGIm~v~s~~ei~~Lnrk~rnKm~~~K~g~~v~~viiQEGV~T~e~~~~~vaEPvvY~id~~~vggFYR  359 (432)
T 3k1t_A          280 VIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGGFYR  359 (432)
T ss_dssp             EEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCEEEEEEEE
T ss_conf             99967899877437996589999997188887566404888703078976854200137855563699988878789998


Q ss_pred             ECCCCCCCCCCCC-CCCEEEE
Q ss_conf             0456860000001-4731110
Q gi|254780696|r  227 IPSEVDNRSNIHA-GGKAELT  246 (316)
Q Consensus       227 ~~~~~~~r~Nl~~-Gg~~~~~  246 (316)
                      +.++-+-..||-. |...++.
T Consensus       360 vh~~k~~~eNLNspGm~F~pl  380 (432)
T 3k1t_A          360 VHTSRGADENLNAPGMHFEPL  380 (432)
T ss_dssp             EESCCSTTTTTSCCTTCEEEE
T ss_pred             ECCCCCCCCCCCCCCCEEEEC
T ss_conf             778888755769999862324


No 53 
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii OT3}
Probab=92.64  E-value=0.11  Score=29.90  Aligned_cols=80  Identities=9%  Similarity=0.113  Sum_probs=46.3

Q ss_pred             HHCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCC-----CCCCEEEECCCCCCHHHHHHHHH----HHC----CCCCCEE
Q ss_conf             30443100037245568888521-4331116885-----43446874488711588999998----400----1334002
Q gi|254780696|r  135 ELMPPTLISRDITQITRFYLEMK-DIIIKPLYGN-----GGTGVFRITLGDRNFSSLIEMLF----EKY----PEPLMIQ  200 (316)
Q Consensus       135 ~~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~-----~G~gV~~i~~~~~~~~~~~e~~~----~~~----~~~ii~Q  200 (316)
                      -++|++.+.++++++.++.++.| |+|+|.....     .+-||.....+...+...++.+.    ...    ...+++|
T Consensus        34 IpvP~~~~~~s~~ea~~~a~~ig~PvVlK~~~~~~~~k~~~GgV~l~i~~~~~~~~a~~~~~~~~~~~~~~~~v~~vlVe  113 (238)
T 1wr2_A           34 LPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVA  113 (238)
T ss_dssp             CCCCCCEEESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEE
T ss_pred             CCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             99999517699999999999819978999845877768985158466788799999999988766412876533518999


Q ss_pred             ECCCCCCCCCEEEEEE
Q ss_conf             1053445682699998
Q gi|254780696|r  201 SYLPQIRDGDKRILLL  216 (316)
Q Consensus       201 efi~~~~~gD~Rv~vi  216 (316)
                      ++++.  ..++.+-+.
T Consensus       114 ~~~~~--~~Elylgi~  127 (238)
T 1wr2_A          114 PMLKP--GREVIIGVT  127 (238)
T ss_dssp             ECCCC--CEEEEEEEE
T ss_pred             EECCC--CEEEEEEEE
T ss_conf             70358--718999986


No 54 
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=88.92  E-value=0.48  Score=25.80  Aligned_cols=71  Identities=11%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             HHHHCCCCEEECCHHHHHHHHHHHH--HHHHHCCCCCCCCC----EEEECCCCCCHHHHHHHHHHH----------C--C
Q ss_conf             5430443100037245568888521--43311168854344----687448871158899999840----------0--1
Q gi|254780696|r  133 FSELMPPTLISRDITQITRFYLEMK--DIIIKPLYGNGGTG----VFRITLGDRNFSSLIEMLFEK----------Y--P  194 (316)
Q Consensus       133 ~~~~~P~T~vt~~~~~~~~f~~~~~--~vViKPl~g~~G~g----V~~i~~~~~~~~~~~e~~~~~----------~--~  194 (316)
                      |--++|+..+..+++++.+..++.+  ++|+|+=--.||||    |. +..+-.........+..+          +  -
T Consensus        15 ~gipvp~g~~~~~~~e~~~~~~~l~~~~~VvKaQvlaGGRGKaGGVk-i~~s~~ea~~~a~~~lg~~l~t~qt~~~G~~v   93 (388)
T 2nu8_B           15 YGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVK-VVNSKEDIRAFAENWLGKRLVTYQTDANGQPV   93 (388)
T ss_dssp             TTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEE-EECSHHHHHHHHHHHTTSEECCTTSCTTCEEC
T ss_pred             CCCCCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE-EECCHHHHHHHHHHHHCCCCEECCCCCCCCEE
T ss_conf             59989994278999999999998689959998552478876667179-96999999999999847320131347788276


Q ss_pred             CCCCEEECCC
Q ss_conf             3340021053
Q gi|254780696|r  195 EPLMIQSYLP  204 (316)
Q Consensus       195 ~~ii~Qefi~  204 (316)
                      ..+++.++++
T Consensus        94 ~~vlvee~~~  103 (388)
T 2nu8_B           94 NQILVEAATD  103 (388)
T ss_dssp             CCEEEEECCC
T ss_pred             EEEEEECCCC
T ss_conf             6999970357


No 55 
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A*
Probab=86.79  E-value=0.41  Score=26.25  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=27.5

Q ss_pred             CCCEEEEEECCHHHCCCCC-----CCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             5331899709988848476-----46799999999889889999541
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKE-----DSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~-----DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      +.|||+|+.+-   --|.+     +....|.++.+++||+|.++.|.
T Consensus         1 ~~MkIl~~~~~---~~P~~~GG~~~~~~~La~~L~~~Gh~V~vvtp~   44 (439)
T 3fro_A            1 RHMKVLLLGFE---FLPVKVGGLAEALTAISEALASLGHEVLVFTPS   44 (439)
T ss_dssp             CCCEEEEECSC---CTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CCEEEEEECCC---CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             97099998886---798567879999999999999769989999158


No 56 
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=86.48  E-value=0.65  Score=24.95  Aligned_cols=43  Identities=7%  Similarity=-0.059  Sum_probs=30.7

Q ss_pred             CCCEEEEEECCHHHCCCCCC-------------CHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             53318997099888484764-------------67999999998898899995412
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKED-------------STFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~D-------------TT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      |.|||+++-.|+..-....+             ....|+++..+|||+|.++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~pP~~~GG~E~~v~~La~~L~~~GH~V~v~~~~~   57 (342)
T 2iuy_A            2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPG   57 (342)
T ss_dssp             -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTT
T ss_pred             CCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             97379997666557777767669899988599999999999997699899992599


No 57 
>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae}
Probab=86.15  E-value=0.7  Score=24.76  Aligned_cols=37  Identities=19%  Similarity=0.099  Sum_probs=27.8

Q ss_pred             CEEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             31899709988-848476467999999998898899995412
Q gi|254780696|r    5 RNIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         5 ~kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      |||+|+..+-. .+.    -.+.|+++..+|||+|.++.+.+
T Consensus         1 Mrilf~~~~~~GH~~----~~l~LA~aL~~~GH~V~v~t~~~   38 (384)
T 2p6p_A            1 MRILFVAAGSPATVF----ALAPLATAARNAGHQVVMAANQD   38 (384)
T ss_dssp             CEEEEECCSSHHHHH----HHHHHHHHHHHTTCEEEEEECGG
T ss_pred             CEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCC
T ss_conf             949998899661899----99999999998899899994852


No 58 
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A*
Probab=85.16  E-value=0.51  Score=25.67  Aligned_cols=40  Identities=10%  Similarity=0.063  Sum_probs=28.2

Q ss_pred             CCCEEEEEECCHHHCC-CC--CCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             5331899709988848-47--646799999999889889999541
Q gi|254780696|r    3 KIRNIAIQMNHISTVK-VK--EDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         3 k~~kI~fimDpi~~i~-~~--~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      +.|||||+.+..  +. +.  ..-+..|+++..++||+|.++.+.
T Consensus        19 ~~MkI~iv~~~~--~p~~GG~~~~i~~La~~L~~~GheV~v~~~~   61 (406)
T 2gek_A           19 SHMRIGMVCPYS--FDVPGGVQSHVLQLAEVLRDAGHEVSVLAPA   61 (406)
T ss_dssp             --CEEEEECSSC--TTSCCHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCC--CCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             998899989987--8999879999999999999779989999428


No 59 
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis}
Probab=84.12  E-value=0.73  Score=24.62  Aligned_cols=40  Identities=18%  Similarity=0.052  Sum_probs=26.8

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             533189970998884847646799999999889889999541
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      |.|||+|+.-|.  +-=....+..|+++.+++||+|.++.+.
T Consensus        14 mkMKI~iv~~P~--~GG~~~~~~~La~~L~~~Gh~V~vit~~   53 (394)
T 2jjm_A           14 MKLKIGITCYPS--VGGSGVVGTELGKQLAERGHEIHFITSG   53 (394)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCCC--CCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             547799989999--9959999999999999779989999479


No 60 
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=83.27  E-value=1.1  Score=23.48  Aligned_cols=38  Identities=11%  Similarity=0.114  Sum_probs=29.3

Q ss_pred             CEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf             3189970998-88484764679999999988988999954124
Q gi|254780696|r    5 RNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPDQL   46 (316)
Q Consensus         5 ~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL   46 (316)
                      |||+|..-.- -.++|    .++|+++.++|||+|.++.+.++
T Consensus         1 M~il~~~~gt~Ghv~P----~lala~~L~~~Gh~V~~~~~~~~   39 (415)
T 1iir_A            1 MRVLLATCGSRGDTEP----LVALAVRVRDLGADVRMCAPPDC   39 (415)
T ss_dssp             CEEEEECCSCHHHHHH----HHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CEEEEECCCCHHHHHH----HHHHHHHHHHCCCEEEEEECCCH
T ss_conf             9799988986468999----99999999987998999958307


No 61 
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=82.63  E-value=1.3  Score=23.02  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=28.2

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHE
Q ss_conf             96533189970998884847646799999999889889999--54124
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQL   46 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL   46 (316)
                      |.+||||++..       ....-=.++++++.++||+|..+  +++.+
T Consensus         1 m~~m~KIlItG-------atG~iG~~l~~~Ll~~g~~V~~l~R~~~~~   41 (227)
T 3dhn_A            1 MEKVKKIVLIG-------ASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             --CCCEEEEET-------CCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCCCCEEEEEC-------CCCHHHHHHHHHHHHCCCEEEEEECCHHHC
T ss_conf             99999999988-------998899999999997849899998684762


No 62 
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=81.58  E-value=1.6  Score=22.35  Aligned_cols=40  Identities=23%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CCCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             9653318997099888-48476467999999998898899995412
Q gi|254780696|r    1 MKKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         1 mkk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      ||| ++|+|+.-+-.. +.    -+++|.++..+|||+|.++.+.+
T Consensus         2 m~~-~~il~~~~~g~GH~~----p~l~la~~L~~rGh~V~~~~~~~   42 (402)
T 3ia7_A            2 MRQ-RHILFANVQGHGHVY----PSLGLVSELARRGHRITYVTTPL   42 (402)
T ss_dssp             CCC-CEEEEECCSSHHHHH----HHHHHHHHHHHTTCEEEEEECHH
T ss_pred             CCC-CEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCC
T ss_conf             999-989998998464799----99999999998889899997810


No 63 
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora}
Probab=79.85  E-value=1.9  Score=21.94  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=29.4

Q ss_pred             CCCCEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             6533189970998-8848476467999999998898899995412
Q gi|254780696|r    2 KKIRNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         2 kk~~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      +.|.+|+|+.-+. ..++    -+++|.+|..+|||+|.++.+..
T Consensus        18 ~~m~~il~~~~~~~GH~~----p~l~la~~L~~rGH~V~v~t~~~   58 (416)
T 3iaa_A           18 RHMAHLLIVNVASHGLIL----PTLTVVTELVRRGHRVSYVTAGG   58 (416)
T ss_dssp             --CCEEEEECCSCHHHHH----HHHHHHHHHHHTTCEEEEEECGG
T ss_pred             CCCCEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCH
T ss_conf             699808997799563799----99999999997889899996823


No 64 
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=79.25  E-value=1.6  Score=22.46  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=25.2

Q ss_pred             CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE-EE
Q ss_conf             31899709988848476467999999998898899-99
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF-HY   41 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~-~~   41 (316)
                      ||++|++..--.-.....+.+.++++|.++||+|. ++
T Consensus         1 Mk~~i~v~~~P~~~~~a~~al~~A~aal~~gh~V~~vF   38 (130)
T 2hy5_A            1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVF   38 (130)
T ss_dssp             CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             98999974799983789999999999997799089999


No 65 
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=79.15  E-value=2.2  Score=21.43  Aligned_cols=36  Identities=11%  Similarity=0.208  Sum_probs=25.1

Q ss_pred             HHCCCCEEECCHHHHHHHHHHHH--HHHHHCC--CCCCCC
Q ss_conf             30443100037245568888521--4331116--885434
Q gi|254780696|r  135 ELMPPTLISRDITQITRFYLEMK--DIIIKPL--YGNGGT  170 (316)
Q Consensus       135 ~~~P~T~vt~~~~~~~~f~~~~~--~vViKPl--~g~~G~  170 (316)
                      -++|+..+..+++++.+..++.+  ++|+|+=  .|..|+
T Consensus        17 ipvp~g~~~~~~~e~~~~~~~l~~~~~VvKaQv~aGgRGK   56 (395)
T 2fp4_B           17 VKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGK   56 (395)
T ss_dssp             CCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGG
T ss_pred             CCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             9899932328999999999970999689990422587754


No 66 
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=78.44  E-value=2.9  Score=20.73  Aligned_cols=106  Identities=12%  Similarity=0.102  Sum_probs=54.2

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf             96533189970998884847646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL   80 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L   80 (316)
                      |.|.|||+|+.     +   .---..|++-..+.||+|+.++.+.=...           .+....   .....+-.--.
T Consensus         1 m~~~MkIg~IG-----l---G~MG~~mA~~L~~~g~~v~v~dr~~~~~~-----------~l~~~G---a~~~~s~~e~~   58 (301)
T 3cky_A            1 MEKSIKIGFIG-----L---GAMGKPMAINLLKEGVTVYAFDLMEANVA-----------AVVAQG---AQACENNQKVA   58 (301)
T ss_dssp             ---CCEEEEEC-----C---CTTHHHHHHHHHHTTCEEEEECSSHHHHH-----------HHHTTT---CEECSSHHHHH
T ss_pred             CCCCCEEEEEE-----H---HHHHHHHHHHHHHCCCEEEEECCCHHHHH-----------HHHHCC---CEECCCHHHHH
T ss_conf             99889899980-----2---78899999999978992899779999999-----------999849---97858999998


Q ss_pred             HHCCEEEEEC-CCCCCHHHHH--HHHHHHHHCCCCEEEC----CHHHHHHCCCHHH
Q ss_conf             0063668832-8862247999--9999986235850411----7488752565034
Q gi|254780696|r   81 SQMDVILIRQ-DPPFNMHYIT--STYLLEKINPETLIVN----NPFWIRNSPEKIF  129 (316)
Q Consensus        81 ~~fD~i~iR~-dPp~d~~yi~--~~~~Le~~~~~~~viN----~p~~i~~~~eKl~  129 (316)
                      ...|++|.=. |++ ..+.+.  ...++..+.++..+|+    +|...+...+++.
T Consensus        59 ~~~dvv~~~l~~~~-a~~~v~~~~~~i~~~~~~g~iiid~sT~~p~~~~~~~~~~~  113 (301)
T 3cky_A           59 AASDIIFTSLPNAG-IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAA  113 (301)
T ss_dssp             HHCSEEEECCSSHH-HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred             HCCCEEEEEECCHH-HHHHHHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             45873688505688-99999817503655258992899899999899999999999


No 67 
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=77.19  E-value=1.3  Score=23.05  Aligned_cols=36  Identities=11%  Similarity=0.009  Sum_probs=26.1

Q ss_pred             CEEEEEECCHHHCCCC-C-----CCHHHHHHHHHHCCCEEEEEEH
Q ss_conf             3189970998884847-6-----4679999999988988999954
Q gi|254780696|r    5 RNIAIQMNHISTVKVK-E-----DSTFAIALEAQVRGYQIFHYTP   43 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~-~-----DTT~~Lm~eAq~RGheV~~~~~   43 (316)
                      |||+|+...+   =|- +     +-...|.++..++||+|.++.|
T Consensus         1 M~I~~v~~e~---~p~~~~GGl~~~v~~L~~aL~~~Gh~V~VitP   42 (485)
T 2qzs_A            1 MQVLHVCSEM---FPLLKTGGLADVIGALPAAQIADGVDARVLLP   42 (485)
T ss_dssp             CEEEEECSCB---TTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEEEEEE---CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9799997722---56235466999999999999976997999968


No 68 
>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=77.07  E-value=1.9  Score=21.86  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=27.0

Q ss_pred             CEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf             3189970998-88484764679999999988988999954124
Q gi|254780696|r    5 RNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPDQL   46 (316)
Q Consensus         5 ~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL   46 (316)
                      |||+|..-+- -.+.|    .++|+++..+|||+|.++.+.++
T Consensus         1 MrIl~~~~gt~Ghv~P----~l~lA~~L~~rGh~V~~~t~~~~   39 (416)
T 1rrv_A            1 MRVLLSVCGTRGDVEI----GVALADRLKALGVQTRMCAPPAA   39 (416)
T ss_dssp             CEEEEEEESCHHHHHH----HHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CEEEEECCCCHHHHHH----HHHHHHHHHHCCCEEEEEECHHH
T ss_conf             9499987986678999----99999999987998999958567


No 69 
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=76.30  E-value=3.9  Score=19.84  Aligned_cols=41  Identities=20%  Similarity=0.165  Sum_probs=27.5

Q ss_pred             CCCCCEEEEEECCHHHCCC--CC-----CC------HHHHHHHHHHCCCEEEEEE
Q ss_conf             9653318997099888484--76-----46------7999999998898899995
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKV--KE-----DS------TFAIALEAQVRGYQIFHYT   42 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~--~~-----DT------T~~Lm~eAq~RGheV~~~~   42 (316)
                      |.++++|+|+- |-.+.++  .+     |+      ...|+++..++||+|.++.
T Consensus         4 ~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~GG~~~yi~~La~~L~~~Gh~V~V~T   57 (499)
T 2r60_A            4 MTRIKHVAFLN-PQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIIT   57 (499)
T ss_dssp             ---CCEEEEEC-CSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             77654599987-8766674334658892989899999999999997799699995


No 70 
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=75.81  E-value=2  Score=21.80  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=26.4

Q ss_pred             CEEEEEECCHHHCCCCC---CCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             31899709988848476---46799999999889889999541
Q gi|254780696|r    5 RNIAIQMNHISTVKVKE---DSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~---DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      |||||++.   +--|..   -.++.|+++.++|||+|.++...
T Consensus         1 m~i~~~~~---~y~p~GG~e~~~~~la~~L~~~Gh~V~v~t~~   40 (374)
T 2iw1_A            1 MIVAFCLY---KYFPFGGLQRDFMRIASTVAARGHHVRVYTQS   40 (374)
T ss_dssp             -CEEEECS---EECTTCHHHHHHHHHHHHHHHTTCCEEEEESE
T ss_pred             CEEEEECC---CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             97999948---67999988999999999999779969999667


No 71 
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=71.33  E-value=3  Score=20.64  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=26.5

Q ss_pred             CEEEEEECCHHHC-CCC--CCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             3189970998884-847--646799999999889889999541
Q gi|254780696|r    5 RNIAIQMNHISTV-KVK--EDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         5 ~kI~fimDpi~~i-~~~--~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      |||+|+....--+ ...  .+-...|.++.+++||+|.++.|.
T Consensus         1 Mkil~i~~e~~p~~~~GGl~~v~~~La~aL~~~Gh~V~VitP~   43 (485)
T 1rzu_A            1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPG   43 (485)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9899996875061245789999999999999769979999679


No 72 
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=69.24  E-value=3.6  Score=20.08  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=26.6

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE-EE
Q ss_conf             5331899709988848476467999999998898899-99
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF-HY   41 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~-~~   41 (316)
                      ..||++|++...-.-.....+-+.++++|.++||+|. ++
T Consensus        11 ~~Mk~~iiv~~~Py~~~~a~~Al~fA~aal~~gh~V~~vF   50 (140)
T 2d1p_A           11 GSMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVF   50 (140)
T ss_dssp             CCCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             7308999983799874899999999999997899089999


No 73 
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3}
Probab=67.42  E-value=3.9  Score=19.85  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=27.0

Q ss_pred             CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             5686000000147311100778999999999999998498799995117
Q gi|254780696|r  229 SEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIG  277 (316)
Q Consensus       229 ~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig  277 (316)
                      ++|.+.-|+++|+.....           .+.+.|.+.-+..|++|+..
T Consensus       223 k~~~~liN~~RG~~vd~~-----------aL~~aL~~g~i~~aalDV~~  260 (307)
T 1wwk_A          223 KKTAILINTSRGPVVDTN-----------ALVKALKEGWIAGAGLDVFE  260 (307)
T ss_dssp             CTTCEEEECSCGGGBCHH-----------HHHHHHHHTSSSEEEESCCS
T ss_pred             CCCEEEEECCCCCCCCHH-----------HHHHHHHHCCCEEEEEECCC
T ss_conf             998099977866446999-----------99999981996369995699


No 74 
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=67.17  E-value=4.1  Score=19.70  Aligned_cols=40  Identities=18%  Similarity=0.156  Sum_probs=27.0

Q ss_pred             CCCEEEEEEC---CHHHCCCCCC------CHHHHHHHHHHCCCEEEEEEH
Q ss_conf             5331899709---9888484764------679999999988988999954
Q gi|254780696|r    3 KIRNIAIQMN---HISTVKVKED------STFAIALEAQVRGYQIFHYTP   43 (316)
Q Consensus         3 k~~kI~fimD---pi~~i~~~~D------TT~~Lm~eAq~RGheV~~~~~   43 (316)
                      +.|||+|+-.   |++... ..|      -...|+++..++||+|.++..
T Consensus        19 ~~~ri~~vs~~~~P~~~~g-~~d~GG~e~~v~~La~~L~~~Gh~V~v~t~   67 (438)
T 3c48_A           19 SHMRVAMISMHTSPLQQPG-TGDSGGMNVYILSTATELAKQGIEVDIYTR   67 (438)
T ss_dssp             CCCEEEEECTTSCTTCC--------CHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEECCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9977999846636300059-998679999999999999977996999954


No 75 
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=67.07  E-value=3.5  Score=20.18  Aligned_cols=43  Identities=5%  Similarity=-0.020  Sum_probs=30.5

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             5331899709988848476467999999998898899995412
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      +|||++|++..----.....+.+.++.++...||+|-++-..|
T Consensus         4 ~mkk~l~ii~~~Py~~~~a~eal~~A~a~~a~~~~V~vff~~d   46 (136)
T 2hy5_B            4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD   46 (136)
T ss_dssp             -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGG
T ss_pred             HHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             5237899977899986789999999999984799779999331


No 76 
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=66.97  E-value=4.8  Score=19.29  Aligned_cols=41  Identities=15%  Similarity=-0.022  Sum_probs=26.9

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCC-HHHHHHHHHHC---CCEEEEEEHHHE
Q ss_conf             96533189970998884847646-79999999988---988999954124
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDS-TFAIALEAQVR---GYQIFHYTPDQL   46 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DT-T~~Lm~eAq~R---GheV~~~~~~dL   46 (316)
                      |+.-|||+++-=     .+.++| |..|++++++.   |+++.+++..++
T Consensus         3 m~~~MKIl~I~G-----S~R~~S~t~~l~~~~~~~~~~g~ev~~idl~~l   47 (193)
T 1rtt_A            3 LSDDIKVLGISG-----SLRSGSYNSAALQEAIGLVPPGMSIELADISGI   47 (193)
T ss_dssp             ----CEEEEEES-----CCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTC
T ss_pred             CCCCCEEEEEEC-----CCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHC
T ss_conf             889977999989-----899888899999999986469998999876778


No 77 
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=58.95  E-value=8.8  Score=17.53  Aligned_cols=38  Identities=18%  Similarity=0.119  Sum_probs=25.4

Q ss_pred             CCEEEEEECCHHHCCCCC-CCHHHHHHHHHHCCCEEEEEEH
Q ss_conf             331899709988848476-4679999999988988999954
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKE-DSTFAIALEAQVRGYQIFHYTP   43 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~-DTT~~Lm~eAq~RGheV~~~~~   43 (316)
                      .|+++||.=.=.  +..| --|..|+++.++||++|-|+-|
T Consensus        25 ~M~~lfItGT~T--gVGKT~Vs~~L~~aL~~~G~~V~~~KP   63 (251)
T 3fgn_A           25 HMTILVVTGTGT--GVGKTVVCAALASAARQAGIDVAVCKP   63 (251)
T ss_dssp             SCEEEEEEESST--TSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEEECCC--CCHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             598689986999--961999999999999968994999774


No 78 
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=58.84  E-value=8.9  Score=17.52  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=29.3

Q ss_pred             CEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf             318997099888-484764679999999988988999954124
Q gi|254780696|r    5 RNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQL   46 (316)
Q Consensus         5 ~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL   46 (316)
                      ++|+|+.-|-.. +.|    .++|++|..+|||+|.++.+...
T Consensus         8 ~hi~~~~~p~~GH~~p----~l~la~~L~~~GH~V~~~t~~~~   46 (430)
T 2iyf_A            8 AHIAMFSIAAHGHVNP----SLEVIRELVARGHRVTYAIPPVF   46 (430)
T ss_dssp             CEEEEECCSCHHHHGG----GHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CEEEEECCCCHHHHHH----HHHHHHHHHHCCCEEEEEECCHH
T ss_conf             8899967874507999----99999999978898999978216


No 79 
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A
Probab=56.76  E-value=7.8  Score=17.88  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=25.9

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             96533189970998884847646799999999889889999
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY   41 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~   41 (316)
                      |--|++++..      +.=.|||+++|.+ |+++||+|-++
T Consensus         1 ~~~~~~v~vl------~SGGKDS~lAl~~-a~~~G~~v~~L   34 (227)
T 2d13_A            1 MVGLADVAVL------YSGGKDSNYALYW-ALKSGLRVRYL   34 (227)
T ss_dssp             -CCSCEEEEE------CCSSHHHHHHHHH-HHHTTCEEEEE
T ss_pred             CCCCCCEEEE------CCCCHHHHHHHHH-HHHCCCEEEEE
T ss_conf             9886649999------3686999999999-99869927999


No 80 
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=54.43  E-value=10  Score=17.05  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf             653318997099888484764679999999988988999954124
Q gi|254780696|r    2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL   46 (316)
Q Consensus         2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL   46 (316)
                      |+.++||++.-   +-++.+ .+..++...++.||+||-.+|+.=
T Consensus        12 ~~~KsIAVVGa---S~~~~k-~g~~v~~~l~~~g~~V~pVnP~~~   52 (138)
T 1y81_A           12 KEFRKIALVGA---SKNPAK-YGNIILKDLLSKGFEVLPVNPNYD   52 (138)
T ss_dssp             --CCEEEEETC---CSCTTS-HHHHHHHHHHHTTCEEEEECTTCS
T ss_pred             CCCCEEEEECC---CCCCCC-HHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             10477999921---699998-299999999978998999889984


No 81 
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=51.97  E-value=11  Score=16.80  Aligned_cols=40  Identities=15%  Similarity=0.208  Sum_probs=25.1

Q ss_pred             CCCC-CEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             9653-3189970998-884847646799999999889889999541
Q gi|254780696|r    1 MKKI-RNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         1 mkk~-~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      |.+. |||+|..--. -++.    -+++|++|.++|||+|.|+...
T Consensus         2 ~~~~~kkili~t~GtGGHi~----~a~ala~~L~~~g~eV~~i~~~   43 (364)
T 1f0k_A            2 MSGQGKRLMVMAGGTGGHVF----PGLAVAHHLMAQGWQVRWLGTA   43 (364)
T ss_dssp             -----CEEEEECCSSHHHHH----HHHHHHHHHHTTTCEEEEEECT
T ss_pred             CCCCCCEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEEEC
T ss_conf             99999769998689799999----9999999999688989999838


No 82 
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=50.18  E-value=12  Score=16.62  Aligned_cols=35  Identities=6%  Similarity=0.096  Sum_probs=26.1

Q ss_pred             CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             6533189970998884847646799999999889889999541
Q gi|254780696|r    2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      .+||||+|+.=        ..-=..|++...+.||+|+.++.+
T Consensus        19 ~~mmkIg~IGl--------G~MG~~mA~~L~~~g~~v~v~dr~   53 (310)
T 3doj_A           19 SHMMEVGFLGL--------GIMGKAMSMNLLKNGFKVTVWNRT   53 (310)
T ss_dssp             CCSCEEEEECC--------SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCEEEEECH--------HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             77687978716--------889999999999789938998699


No 83 
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=48.55  E-value=13  Score=16.46  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=27.9

Q ss_pred             CEEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             31899709988-848476467999999998898899995412
Q gi|254780696|r    5 RNIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         5 ~kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      ++|+|+.-|-. ++.    -.++|+++..+|||+|.++.+.+
T Consensus        13 ~~ilf~~~p~~GHv~----p~l~la~~L~~rGH~V~v~~~~~   50 (424)
T 2iya_A           13 RHISFFNIPGHGHVN----PSLGIVQELVARGHRVSYAITDE   50 (424)
T ss_dssp             CEEEEECCSCHHHHH----HHHHHHHHHHHTTCEEEEEECGG
T ss_pred             CEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCC
T ss_conf             849997787163799----99999999998889899996841


No 84 
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=48.44  E-value=13  Score=16.45  Aligned_cols=42  Identities=12%  Similarity=0.054  Sum_probs=27.2

Q ss_pred             CCCEEEEEECC-HHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             53318997099-88848476467999999998898899995412
Q gi|254780696|r    3 KIRNIAIQMNH-ISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         3 k~~kI~fimDp-i~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      +.+||.|++.. +++ ..+-.+-+.++..|...||+|.++-..+
T Consensus        14 ~~~~i~Iivt~Gp~d-~~ra~~af~lA~~A~~~G~eV~iFl~~~   56 (134)
T 3mc3_A           14 QXXXILIVVTHGPED-LDRTYAPLFMASISASMEYETSVFFMIX   56 (134)
T ss_dssp             CCCEEEEEECCCGGG-THHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             663699999469998-7999999999999997899299999606


No 85 
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with cofactor and product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=44.65  E-value=15  Score=16.07  Aligned_cols=33  Identities=15%  Similarity=-0.048  Sum_probs=20.5

Q ss_pred             CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             31899709988848476467999999998898899995412
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      |||+++.-        ..--+.++....++||+|.-++.+.
T Consensus         1 MkI~ViGl--------GyVGl~~a~~la~~G~~V~g~D~d~   33 (436)
T 1mv8_A            1 MRISIFGL--------GYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECC--------STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECC--------CHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf             97999896--------7789999999994899789998999


No 86 
>1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} SCOP: c.23.5.3 PDB: 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* 2qx6_A* 2qx8_A* 2qx9_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 2bzs_A*
Probab=43.87  E-value=10  Score=17.12  Aligned_cols=38  Identities=13%  Similarity=0.066  Sum_probs=26.4

Q ss_pred             CEEEEEECCHHHCCCCCCC-HH----HHHHHHHHCCCEEEEEEHHHEE
Q ss_conf             3189970998884847646-79----9999999889889999541248
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDS-TF----AIALEAQVRGYQIFHYTPDQLY   47 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DT-T~----~Lm~eAq~RGheV~~~~~~dL~   47 (316)
                      |||+++.-.     |.++| |.    ++++++++.||+|-+++..+..
T Consensus         3 mKvLiI~g~-----P~~~S~s~~l~~~~~~~l~~~g~ev~~~dL~~~~   45 (230)
T 1sg0_A            3 KKVLIVYAH-----QEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMN   45 (230)
T ss_dssp             CEEEEEECC-----SCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTT
T ss_pred             CEEEEEEEC-----CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             889999828-----9985689999999999999679979999870249


No 87 
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=43.74  E-value=14  Score=16.23  Aligned_cols=42  Identities=7%  Similarity=0.052  Sum_probs=24.5

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             331899709988848476467999999998898899995412
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      |+|++|+...---=......-+.+++++..-||+|.++-..|
T Consensus         1 Mkk~~ii~~~~P~~~~~~~~al~~Ala~~~~~~~V~vff~~d   42 (119)
T 2d1p_B            1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIAD   42 (119)
T ss_dssp             CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGG
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf             966999967899987789999999999983799679999240


No 88 
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=43.57  E-value=9.6  Score=17.29  Aligned_cols=40  Identities=13%  Similarity=0.020  Sum_probs=23.0

Q ss_pred             CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             31899709988848476467999999998898899995412
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      |||+|+.+....-.=....+..|+ ++.++||+|.++....
T Consensus         1 MKIl~i~~~~~~~~G~~~~~~~l~-~~L~~~heV~v~~~~~   40 (413)
T 3oy2_A            1 MKLIIVGAHSSVPSGYGRVMRAIV-PRISKAHEVIVFGIHA   40 (413)
T ss_dssp             CEEEEEEECTTCCSHHHHHHHHHH-HHHTTTSEEEEEEESC
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHH-HHHHCCCCEEEEECCC
T ss_conf             948998899999883999999999-9986589899997578


No 89 
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=41.86  E-value=16  Score=15.79  Aligned_cols=41  Identities=10%  Similarity=0.051  Sum_probs=31.7

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEE
Q ss_conf             533189970998884847646799999999889889999541248
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLY   47 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~   47 (316)
                      -|++++++.-   +-+|.+ .+..+++..+++||+||-.+|+.=.
T Consensus         3 ~~K~iaVvGa---S~~~~k-~g~~v~~~L~~~G~~V~pVnP~~~~   43 (122)
T 3ff4_A            3 AMKKTLILGA---TPETNR-YAYLAAERLKSHGHEFIPVGRKKGE   43 (122)
T ss_dssp             CCCCEEEETC---CSCTTS-HHHHHHHHHHHHTCCEEEESSSCSE
T ss_pred             CCCEEEEEEE---CCCCCC-HHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             7664999966---699998-2999999999789989998887761


No 90 
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=41.22  E-value=12  Score=16.63  Aligned_cols=19  Identities=21%  Similarity=0.280  Sum_probs=10.5

Q ss_pred             HHHHHHHHCCC-EEEEEEHH
Q ss_conf             99999998898-89999541
Q gi|254780696|r   26 AIALEAQVRGY-QIFHYTPD   44 (316)
Q Consensus        26 ~Lm~eAq~RGh-eV~~~~~~   44 (316)
                      +|..||..||- +|++.+.+
T Consensus        66 ~lglEAlSRGA~~v~fVE~~   85 (201)
T 2ift_A           66 SLGFEALSRQAKKVTFLELD   85 (201)
T ss_dssp             HHHHHHHHTTCSEEEEECSC
T ss_pred             HHHHHHHHCCCCEEEEEEEC
T ss_conf             98999998899399999740


No 91 
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, structurual genomics; 2.20A {Pseudomonas aeruginosa PAO1} SCOP: c.2.1.3 d.81.1.1
Probab=40.35  E-value=17  Score=15.64  Aligned_cols=103  Identities=10%  Similarity=0.101  Sum_probs=57.9

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCE---EEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCC
Q ss_conf             9653318997099888484764679999999988988---9999541248999899999999998077741265046443
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQ---IFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKI   77 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGhe---V~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~   77 (316)
                      |.+.||||++.       ....+=..|++-..++.|.   ++.+.-.+   +.|+      ++.+.+   ..++..+-..
T Consensus         3 Ms~~i~VaIvG-------ATGyvG~eLi~lL~~~~hP~~~l~~~aS~~---saGk------~i~~~~---~~l~v~~l~~   63 (340)
T 2hjs_A            3 MSQPLNVAVVG-------ATGSVGEALVGLLDERDFPLHRLHLLASAE---SAGQ------RMGFAE---SSLRVGDVDS   63 (340)
T ss_dssp             --CCCCEEEET-------TTSHHHHHHHHHHHHTTCCCSCEEEEECTT---TTTC------EEEETT---EEEECEEGGG
T ss_pred             CCCCCEEEEEC-------CCCHHHHHHHHHHHHCCCCCCEEEEEECCC---CCCC------EEEECC---EEEEEEECCH
T ss_conf             99985599988-------855999999999986699845399998667---7897------766899---2789996873


Q ss_pred             CCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCH
Q ss_conf             52100636688328862247999999998623585041174887525650
Q gi|254780696|r   78 IDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEK  127 (316)
Q Consensus        78 ~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eK  127 (316)
                      .++.++|++|.=...     ..+.-+.-...+.+..||......|.-.+.
T Consensus        64 ~~~~~~DvvF~alp~-----~~s~~~~~~~~~~g~~ViDlS~~~r~~~~p  108 (340)
T 2hjs_A           64 FDFSSVGLAFFAAAA-----EVSRAHAERARAAGCSVIDLSGALEPSVAP  108 (340)
T ss_dssp             CCGGGCSEEEECSCH-----HHHHHHHHHHHHTTCEEEETTCTTTTTTSC
T ss_pred             HHHCCCCEEEECCCC-----CHHHHHHHHHHHCCEEEEECCCCCCCCCCC
T ss_conf             242048889985886-----147999999854691799787656666421


No 92 
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=35.52  E-value=7.1  Score=18.14  Aligned_cols=43  Identities=9%  Similarity=0.220  Sum_probs=29.0

Q ss_pred             CCCCCEEEE-EECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEH
Q ss_conf             965331899-70998-88484764679999999988988999954
Q gi|254780696|r    1 MKKIRNIAI-QMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTP   43 (316)
Q Consensus         1 mkk~~kI~f-imDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~   43 (316)
                      |.|.|||+. ||+|. ..+.-..+.-..++.+|.++|-++-++.-
T Consensus         1 m~~~mKIAlaQ~n~~~GD~~~N~~ki~~~i~~A~~~GAdLvVfPE   45 (590)
T 3n05_A            1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPE   45 (590)
T ss_dssp             -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCT
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             986578989978998676999999999999999977995999888


No 93 
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=34.96  E-value=21  Score=15.10  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf             79999999988988999954124
Q gi|254780696|r   24 TFAIALEAQVRGYQIFHYTPDQL   46 (316)
Q Consensus        24 T~~Lm~eAq~RGheV~~~~~~dL   46 (316)
                      -++|+++..+|||+|.++.+.+.
T Consensus        17 ~lalA~~L~~rGh~V~~~t~~~~   39 (404)
T 3h4t_A           17 LVALAARLRELGADARMCLPPDY   39 (404)
T ss_dssp             HHHHHHHHHHTTCCEEEEECGGG
T ss_pred             HHHHHHHHHHCCCEEEEEECCHH
T ss_conf             99999999987997999978017


No 94 
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421}
Probab=34.45  E-value=19  Score=15.35  Aligned_cols=77  Identities=13%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHH
Q ss_conf             84764679999999988988999954124899989999999999807774126504644352100636688328862247
Q gi|254780696|r   18 KVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMH   97 (316)
Q Consensus        18 ~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~   97 (316)
                      +|++=|-..+-.++++.|-.+.++++.+-++..|+               .   +.+.-..--.-.|++.+|..+.-   
T Consensus        57 epSTRTR~SFe~A~~~LGg~vi~~~~~~ss~~kgE---------------s---~~Dt~~~ls~~~d~iv~R~~~~~---  115 (323)
T 3gd5_A           57 KASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGE---------------P---VRDTARVLGRYVDGLAIRTFAQT---  115 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCEEEEC----------C---------------C---HHHHHHHHTTTCSEEEEECSSHH---
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC---------------C---HHHHHHHHHCCCHHHHEECCHHH---
T ss_conf             89711699999999985991996354224457763---------------0---37799998522114321000056---


Q ss_pred             HHHHHHHHHHHC-CCCEEECCHHH
Q ss_conf             999999998623-58504117488
Q gi|254780696|r   98 YITSTYLLEKIN-PETLIVNNPFW  120 (316)
Q Consensus        98 yi~~~~~Le~~~-~~~~viN~p~~  120 (316)
                      .     +.+.++ .++.|||--++
T Consensus       116 ~-----~~~~a~~s~vPVINag~~  134 (323)
T 3gd5_A          116 E-----LEEYAHYAGIPVINALTD  134 (323)
T ss_dssp             H-----HHHHHHHHCSCEEEEECS
T ss_pred             H-----HHHHHHCCCCCEEECCCC
T ss_conf             7-----999852179776858887


No 95 
>2fhz_A Colicin-E5 immunity protein; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.311.1.1 PDB: 2dfx_I
Probab=30.76  E-value=24  Score=14.65  Aligned_cols=33  Identities=27%  Similarity=0.612  Sum_probs=17.3

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             0147311100778999999999999998498799995
Q gi|254780696|r  238 HAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGID  274 (316)
Q Consensus       238 ~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiD  274 (316)
                      +.+|.+...--++.-+++|+++++.    ||..++||
T Consensus        20 ~l~Gn~~MkLs~kAAieVCe~Atk~----gL~I~~IE   52 (109)
T 2fhz_A           20 ELKGNASMKLSPKAAIEVCNEAAKK----GLWILGID   52 (109)
T ss_dssp             HTTCTTTCCBCHHHHHHHHHHHHHH----TCCEEEEE
T ss_pred             HCCCCEEEEECCHHHHHHHHHHHHC----CCEEEEEE
T ss_conf             0078468997708899999999866----91699864


No 96 
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46
Probab=29.79  E-value=19  Score=15.32  Aligned_cols=12  Identities=17%  Similarity=-0.056  Sum_probs=5.1

Q ss_pred             EECCHHHHHHCC
Q ss_conf             411748875256
Q gi|254780696|r  114 IVNNPFWIRNSP  125 (316)
Q Consensus       114 viN~p~~i~~~~  125 (316)
                      |=+++.++..+.
T Consensus        73 Ve~~~~~~~~~~   84 (187)
T 2fhp_A           73 IEKNFAALKVIK   84 (187)
T ss_dssp             EESCHHHHHHHH
T ss_pred             EEECHHHHHHHH
T ss_conf             994246776766


No 97 
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=28.55  E-value=26  Score=14.41  Aligned_cols=38  Identities=8%  Similarity=0.077  Sum_probs=20.5

Q ss_pred             CCEEEEEE-CCHHHCCCCCCCHHHHHHHHHH--CCCEEEEEE
Q ss_conf             33189970-9988848476467999999998--898899995
Q gi|254780696|r    4 IRNIAIQM-NHISTVKVKEDSTFAIALEAQV--RGYQIFHYT   42 (316)
Q Consensus         4 ~~kI~fim-Dpi~~i~~~~DTT~~Lm~eAq~--RGheV~~~~   42 (316)
                      |.|++|++ .++.+ ....++.+.++.++..  .|++|.++-
T Consensus         1 M~k~~ii~~~~P~~-~~~~~~al~~a~a~~a~~~~~~V~vff   41 (117)
T 1jx7_A            1 MQKIVIVANGAPYG-SESLFNSLRLAIALREQESNLDLRLFL   41 (117)
T ss_dssp             CCEEEEEECCCTTT-CSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             95799999479988-278999999999998547898589999


No 98 
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=28.37  E-value=27  Score=14.39  Aligned_cols=105  Identities=11%  Similarity=0.100  Sum_probs=50.5

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH
Q ss_conf             53318997099888484764679999999988988999954124899989999999999807774126504644352100
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ   82 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~   82 (316)
                      |.|||+|+.=        ..--..|++...+.||+|+.++.+.=...           .+.....   ...++-.--..+
T Consensus         4 M~mkIgvIGl--------G~MG~~~a~~L~~~G~~V~~~d~~~~~~~-----------~l~~~g~---~~~~s~~e~~~~   61 (299)
T 1vpd_A            4 MTMKVGFIGL--------GIMGKPMSKNLLKAGYSLVVSDRNPEAIA-----------DVIAAGA---ETASTAKAIAEQ   61 (299)
T ss_dssp             --CEEEEECC--------STTHHHHHHHHHHTTCEEEEECSCHHHHH-----------HHHHTTC---EECSSHHHHHHH
T ss_pred             CCCEEEEEEE--------HHHHHHHHHHHHHCCCEEEEEECCHHHHH-----------HHHHCCC---EECCCHHHHHHC
T ss_conf             5452889830--------89889999999978996999809999999-----------9998599---454899999847


Q ss_pred             CCEEEEEC-CCCCCHHHHH-HHHHHHHHCCCCEEEC----CHHHHHHCCCHHH
Q ss_conf             63668832-8862247999-9999986235850411----7488752565034
Q gi|254780696|r   83 MDVILIRQ-DPPFNMHYIT-STYLLEKINPETLIVN----NPFWIRNSPEKIF  129 (316)
Q Consensus        83 fD~i~iR~-dPp~d~~yi~-~~~~Le~~~~~~~viN----~p~~i~~~~eKl~  129 (316)
                      .|+||+=. |++.-...+. .-.+++.+..+..++|    +|+..+...+.+.
T Consensus        62 ~divi~~v~~~~~v~~v~~~~~~i~~~~~~g~iiid~sT~~p~~~~~~~~~~~  114 (299)
T 1vpd_A           62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALK  114 (299)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             99899975987899999958246873499999899899897689999999999


No 99 
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
Probab=27.20  E-value=28  Score=14.26  Aligned_cols=37  Identities=8%  Similarity=-0.104  Sum_probs=20.8

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCC--CEEEEEEHHH
Q ss_conf             96533189970998884847646799999999889--8899995412
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRG--YQIFHYTPDQ   45 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RG--heV~~~~~~d   45 (316)
                      |-.||||+++.-     =.   -=+.++....+.|  ++|.-++.+.
T Consensus         2 ~~~m~kI~ViGl-----Gy---VGl~~a~~lA~~g~~~~V~g~Did~   40 (467)
T 2q3e_A            2 MFEIKKICCIGA-----GY---VGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCCCCEEEEECC-----ST---THHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCCCCEEEEECC-----CH---HHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf             656877999887-----85---2699999999739998499998999


No 100
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46
Probab=26.90  E-value=27  Score=14.39  Aligned_cols=10  Identities=0%  Similarity=-0.333  Sum_probs=4.5

Q ss_pred             CCHHHHHHCC
Q ss_conf             1748875256
Q gi|254780696|r  116 NNPFWIRNSP  125 (316)
Q Consensus       116 N~p~~i~~~~  125 (316)
                      +++.++..+.
T Consensus        85 ~~~~a~~~l~   94 (202)
T 2fpo_A           85 MDRAVSQQLI   94 (202)
T ss_dssp             SCHHHHHHHH
T ss_pred             ECCCHHHHHH
T ss_conf             7033356788


No 101
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=26.82  E-value=27  Score=14.34  Aligned_cols=38  Identities=11%  Similarity=-0.021  Sum_probs=25.2

Q ss_pred             CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             965331899709988848476467999999998898899995412
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      |.+||||++..-       ..--=..|+.+..++||++.++....
T Consensus         1 m~~~k~ILITG~-------tGfiG~~l~~~Ll~~g~~v~v~~~d~   38 (348)
T 1oc2_A            1 MSQFKNIIVTGG-------AGFIGSNFVHYVYNNHPDVHVTVLDK   38 (348)
T ss_dssp             --CCSEEEEETT-------TSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CCCCCEEEEECC-------CCHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             999988999478-------86899999999997799739999837


No 102
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=26.78  E-value=26  Score=14.45  Aligned_cols=43  Identities=9%  Similarity=0.098  Sum_probs=28.6

Q ss_pred             CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             65331899709988848476467999999998898899995412
Q gi|254780696|r    2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      +|.+.||+++..+++ ....+---.+.++|+++|+++.++...+
T Consensus         5 ~~s~~Iglv~~~~~~-~f~~~i~~gi~~~~~~~gy~~~l~~~~~   47 (289)
T 1dbq_A            5 NHTKSIGLLATSSEA-AYFAEIIEAVEKNCFQKGYTLILGNAWN   47 (289)
T ss_dssp             ---CEEEEEESCTTS-HHHHHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred             CCCCEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             999979999699988-8999999999999998699999996899


No 103
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4}
Probab=25.21  E-value=30  Score=14.03  Aligned_cols=20  Identities=20%  Similarity=0.140  Sum_probs=17.0

Q ss_pred             CHHHHHHHHHHCCCEEEEEE
Q ss_conf             67999999998898899995
Q gi|254780696|r   23 STFAIALEAQVRGYQIFHYT   42 (316)
Q Consensus        23 TT~~Lm~eAq~RGheV~~~~   42 (316)
                      +-++|+++|.+||++|.++.
T Consensus        31 ~G~~iA~~~~~~Ga~V~li~   50 (232)
T 2gk4_A           31 LGKIITETLLSAGYEVCLIT   50 (232)
T ss_dssp             HHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEE
T ss_conf             99999999997899899996


No 104
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi GE5} PDB: 3iw3_A 1j31_A
Probab=25.19  E-value=18  Score=15.48  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             CCEEE-EEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             33189-970998-8848476467999999998898899995
Q gi|254780696|r    4 IRNIA-IQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYT   42 (316)
Q Consensus         4 ~~kI~-fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~   42 (316)
                      ||||| .|++|. ..++-.......++.+|.+.|-++-++.
T Consensus         1 m~kva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadliv~P   41 (262)
T 3ivz_A            1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLP   41 (262)
T ss_dssp             -CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECC
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             96999995888779999999999999999998879699968


No 105
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=24.24  E-value=17  Score=15.65  Aligned_cols=28  Identities=21%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             EEECCHHHHHHHHHHHH------------HHHHHCCCCCC
Q ss_conf             00037245568888521------------43311168854
Q gi|254780696|r  141 LISRDITQITRFYLEMK------------DIIIKPLYGNG  168 (316)
Q Consensus       141 ~vt~~~~~~~~f~~~~~------------~vViKPl~g~~  168 (316)
                      +|.++++++++|+.+|+            ++|.||++.-.
T Consensus        14 lv~~~~~~l~~fl~~h~~~~~l~dias~~k~vykp~f~~y   53 (128)
T 3da5_A           14 LVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRY   53 (128)
T ss_dssp             HTTSCHHHHHHHHHHTTTTEEEEETTSSSCCEEEECBCTT
T ss_pred             HHCCCHHHHHHHHHHHHCCEEHHHHCCHHHHHHHHHHHHH
T ss_conf             9778989999999971043308864131245776889982


No 106
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=22.62  E-value=34  Score=13.70  Aligned_cols=34  Identities=9%  Similarity=-0.050  Sum_probs=24.3

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             533189970998884847646799999999889889999541
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      +.|||+|+.==        .-=..|++...+.||+|+.++.+
T Consensus         6 ~~mkIg~IGlG--------~MG~~mA~~L~~~G~~v~v~dr~   39 (303)
T 3g0o_A            6 TDFHVGIVGLG--------SMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             -CCEEEEECCS--------HHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEEEHH--------HHHHHHHHHHHHCCCEEEEECCC
T ss_conf             98869998427--------87899999999789948997899


No 107
>1wxc_B MELC; tyrosinase, binary complex, type-3 copper, oxidoreductase/metal transport complex; 1.20A {Streptomyces castaneoglobisporus} PDB: 1wx2_B 1wx4_B 1wx5_B 1wx3_B 2ahk_B 2ahl_B 2zmx_B 2zmy_B 2zmz_B 2zwd_B 2zwe_B* 2zwf_B* 2zwg_B*
Probab=22.22  E-value=34  Score=13.65  Aligned_cols=43  Identities=7%  Similarity=0.054  Sum_probs=31.0

Q ss_pred             EEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             998998863212204568600000014731110077899999999999999
Q gi|254780696|r  214 LLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLR  264 (316)
Q Consensus       214 ~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~  264 (316)
                      +.|||+++..|+|  ..|+|.|-      ..-|+.-+.-.+.+..+...|.
T Consensus        74 V~IDGr~LHvMr~--ADGs~lS~------v~HYes~ptpl~aARAAVdeL~  116 (134)
T 1wxc_B           74 VFVDGVQLHVMRN--ADGSWISV------VSHYDPVPTPRAAARAAVDELQ  116 (134)
T ss_dssp             EEETTEEECEEEC--TTSCEEES------SSCSSCBSSHHHHHHHHHHHHT
T ss_pred             EEECCEEEEEEEC--CCCCEEEE------EECCCCCCCHHHHHHHHHHHHC
T ss_conf             9988968466874--88867866------6415677998999999999736


No 108
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=21.43  E-value=36  Score=13.55  Aligned_cols=20  Identities=35%  Similarity=0.360  Sum_probs=17.2

Q ss_pred             CHHHHHHHHHHCCCEEEEEE
Q ss_conf             67999999998898899995
Q gi|254780696|r   23 STFAIALEAQVRGYQIFHYT   42 (316)
Q Consensus        23 TT~~Lm~eAq~RGheV~~~~   42 (316)
                      +-++|+++|.+||++|.++.
T Consensus        36 ~G~~iA~~~~~~Ga~V~li~   55 (226)
T 1u7z_A           36 MGFAIAAAAARRGANVTLVS   55 (226)
T ss_dssp             HHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEE
T ss_conf             99999868987898899997


No 109
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.38  E-value=36  Score=13.54  Aligned_cols=41  Identities=12%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             533189970998884847646799999999889889999541
Q gi|254780696|r    3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      |.+||++++..++.- .-....-.+-.+|.+.|+++.++...
T Consensus         1 k~~~Ig~~v~~~~~~-~~~~~~~~~~~~a~~~G~~~~v~~~~   41 (313)
T 3m9w_A            1 KEVKIGMAIDDLRLE-RWQKDRDIFVKKAESLGAKVFVQSAN   41 (313)
T ss_dssp             --CEEEEEESCCSSS-TTHHHHHHHHHHHHHTSCEEEEEECT
T ss_pred             CCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             971999994889998-99999999999999739989999599


No 110
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
Probab=20.40  E-value=37  Score=13.41  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=24.9

Q ss_pred             CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf             33189970998884847646799999999889889999541
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD   44 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~   44 (316)
                      |+||+|+.     +   ..--.+|++...+.||+|+.++.+
T Consensus         3 m~kIg~IG-----l---G~MG~~mA~~L~~~G~~v~v~dr~   35 (302)
T 2h78_A            3 MKQIAFIG-----L---GHMGAPMATNLLKAGYLLNVFDLV   35 (302)
T ss_dssp             CCEEEEEC-----C---STTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEE-----E---HHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             48899982-----5---488999999999789978998499


No 111
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.88A {Caenorhabditis elegans}
Probab=20.21  E-value=38  Score=13.39  Aligned_cols=38  Identities=3%  Similarity=-0.053  Sum_probs=21.0

Q ss_pred             CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf             65331899709988848476467999999998898899995412
Q gi|254780696|r    2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ   45 (316)
Q Consensus         2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d   45 (316)
                      -||+||+++.     +=.-. .+++...+....|++|+-++.+.
T Consensus         7 ~k~~KI~ViG-----lGyVG-l~~a~~~A~~g~~~~V~g~Did~   44 (481)
T 2o3j_A            7 GKVSKVVCVG-----AGYVG-GPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCCCEEEEEC-----CSTTH-HHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCCCEEEEEC-----CCHHH-HHHHHHHHHCCCCCEEEEEECCH
T ss_conf             6667599987-----77778-99999998149998599998999


No 112
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=20.18  E-value=38  Score=13.38  Aligned_cols=27  Identities=11%  Similarity=0.036  Sum_probs=22.7

Q ss_pred             HCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             848476467999999998898899995
Q gi|254780696|r   16 TVKVKEDSTFAIALEAQVRGYQIFHYT   42 (316)
Q Consensus        16 ~i~~~~DTT~~Lm~eAq~RGheV~~~~   42 (316)
                      .+||.+++|..+++++.+-|-++--+.
T Consensus        14 ~iDPd~e~s~~~i~~l~e~GaD~IEiG   40 (234)
T 2f6u_A           14 KLDPDRTNTDEIIKAVADSGTDAVMIS   40 (234)
T ss_dssp             EECTTSCCCHHHHHHHHTTTCSEEEEC
T ss_pred             EECCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             658899758999999997599999987


No 113
>3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A*
Probab=20.08  E-value=38  Score=13.37  Aligned_cols=38  Identities=3%  Similarity=-0.023  Sum_probs=22.6

Q ss_pred             CCEEEEEECCHHHCCCCCCC--HH----HHHHHHHHC--CCEEEEEEHHHE
Q ss_conf             33189970998884847646--79----999999988--988999954124
Q gi|254780696|r    4 IRNIAIQMNHISTVKVKEDS--TF----AIALEAQVR--GYQIFHYTPDQL   46 (316)
Q Consensus         4 ~~kI~fimDpi~~i~~~~DT--T~----~Lm~eAq~R--GheV~~~~~~dL   46 (316)
                      |+||+++.-.     |.++.  |.    +++++++++  |++|.+++..+.
T Consensus         1 M~kILvI~gs-----pr~~~S~s~~l~~~~~~~~~~~~~~~ev~~~dL~~~   46 (212)
T 3keg_A            1 MSRILAVHAS-----PRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV   46 (212)
T ss_dssp             -CEEEEEECC-----SCSTTCHHHHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCEEEEEECC-----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             9759999838-----998877899999999999996199988999987446


Done!