Query gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 316 No_of_seqs 185 out of 1614 Neff 7.0 Searched_HMMs 23785 Date Tue May 31 17:05:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780696.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1gsa_A Glutathione synthetase; 100.0 0 0 623.0 36.4 312 4-315 1-314 (316) 2 2p0a_A Synapsin-3, synapsin II 100.0 1.1E-37 4.5E-42 266.0 0.9 288 7-314 2-324 (344) 3 1uc8_A LYSX, lysine biosynthes 100.0 1.1E-32 4.5E-37 233.3 19.3 255 24-313 13-278 (280) 4 1i7n_A Synapsin II; synapse, p 100.0 3.7E-31 1.6E-35 223.2 12.6 285 5-314 2-307 (309) 5 1pk8_A RAT synapsin I; ATP bin 100.0 1.5E-29 6.3E-34 212.7 12.2 220 83-313 181-418 (422) 6 2q7d_A Inositol-tetrakisphosph 99.9 1.5E-26 6.3E-31 193.0 16.4 257 3-315 17-332 (346) 7 1iow_A DD-ligase, DDLB, D-ALA\ 99.8 7.9E-17 3.3E-21 129.3 23.5 270 1-311 1-303 (306) 8 2i87_A D-alanine-D-alanine lig 99.8 1E-16 4.4E-21 128.5 18.7 286 1-307 1-335 (364) 9 3lwb_A D-alanine--D-alanine li 99.7 1.3E-15 5.3E-20 121.4 19.1 295 3-310 9-362 (373) 10 2pvp_A D-alanine-D-alanine lig 99.7 3.8E-16 1.6E-20 124.8 15.0 271 5-293 21-329 (367) 11 3e5n_A D-alanine-D-alanine lig 99.7 7.3E-15 3.1E-19 116.4 21.5 288 1-306 20-362 (386) 12 1z2n_X Inositol 1,3,4-trisphos 99.7 1.1E-15 4.8E-20 121.7 14.7 200 81-294 55-304 (324) 13 3k3p_A D-alanine--D-alanine li 99.7 4.8E-14 2E-18 111.0 21.6 282 1-308 35-366 (383) 14 1ehi_A LMDDL2, D-alanine:D-lac 99.7 5.4E-14 2.3E-18 110.7 21.0 274 1-310 1-348 (377) 15 1e4e_A Vancomycin/teicoplanin 99.7 5.4E-14 2.3E-18 110.7 20.7 297 1-312 1-339 (343) 16 3df7_A Putative ATP-grAsp supe 99.7 1.4E-15 5.7E-20 121.2 12.3 191 79-310 66-272 (305) 17 3i12_A D-alanine-D-alanine lig 99.6 2.5E-13 1.1E-17 106.3 23.0 285 1-307 1-344 (364) 18 2pn1_A Carbamoylphosphate synt 99.6 6.9E-15 2.9E-19 116.6 10.5 262 26-310 17-294 (331) 19 3ouz_A Biotin carboxylase; str 99.5 4.8E-11 2E-15 91.4 23.5 284 2-309 4-319 (446) 20 2dwc_A PH0318, 433AA long hypo 99.5 1.4E-12 5.7E-17 101.5 14.8 273 4-310 19-321 (433) 21 2fb9_A D-alanine:D-alanine lig 99.5 8.6E-12 3.6E-16 96.3 16.6 219 78-311 72-318 (322) 22 3eth_A Phosphoribosylaminoimid 99.4 7.2E-12 3E-16 96.7 15.6 249 4-310 1-266 (355) 23 2dzd_A Pyruvate carboxylase; b 99.4 6.7E-11 2.8E-15 90.4 18.9 275 1-308 3-318 (461) 24 3hbl_A Pyruvate carboxylase; T 99.4 5.6E-11 2.4E-15 90.9 16.9 284 1-309 1-317 (1150) 25 2yw2_A Phosphoribosylamine--gl 99.4 4.3E-11 1.8E-15 91.7 16.0 278 5-310 1-312 (424) 26 2ip4_A PURD, phosphoribosylami 99.3 4.5E-10 1.9E-14 85.0 15.4 278 5-312 1-308 (417) 27 2vpq_A Acetyl-COA carboxylase; 99.2 9.5E-09 4E-13 76.3 21.9 266 23-309 12-315 (451) 28 2yrx_A Phosphoribosylglycinami 99.2 2.2E-09 9.4E-14 80.4 16.5 278 2-311 19-334 (451) 29 3k5i_A Phosphoribosyl-aminoimi 99.2 3E-09 1.2E-13 79.6 17.0 267 4-309 24-314 (403) 30 2r85_A PURP protein PF1517; AT 99.2 5E-11 2.1E-15 91.2 7.8 240 20-285 9-286 (334) 31 1ulz_A Pyruvate carboxylase N- 99.2 1.1E-08 4.7E-13 75.9 18.5 193 110-308 97-313 (451) 32 3lp8_A Phosphoribosylamine-gly 99.1 2E-08 8.5E-13 74.2 19.1 216 82-312 83-335 (442) 33 2r7k_A 5-formaminoimidazole-4- 99.1 6.8E-09 2.9E-13 77.2 13.7 237 22-284 27-312 (361) 34 3glk_A Acetyl-COA carboxylase 99.0 1.8E-08 7.7E-13 74.4 15.3 217 81-309 122-387 (540) 35 1a9x_A Carbamoyl phosphate syn 99.0 3.9E-09 1.6E-13 78.9 11.9 281 4-308 7-325 (1073) 36 3jrx_A Acetyl-COA carboxylase 99.0 5.4E-08 2.3E-12 71.4 17.0 212 81-309 138-403 (587) 37 1kjq_A GART 2, phosphoribosylg 99.0 6.7E-08 2.8E-12 70.7 17.4 269 5-309 12-305 (391) 38 1w96_A ACC, acetyl-coenzyme A 99.0 7.6E-08 3.2E-12 70.4 17.0 276 3-309 46-394 (554) 39 2qk4_A Trifunctional purine bi 99.0 1.9E-08 7.8E-13 74.4 13.5 218 81-311 87-340 (452) 40 1a9x_A Carbamoyl phosphate syn 99.0 5.3E-08 2.2E-12 71.4 15.5 194 110-309 657-868 (1073) 41 2w70_A Biotin carboxylase; lig 98.9 2.8E-08 1.2E-12 73.2 12.9 281 3-308 1-314 (449) 42 3n6x_A Putative glutathionylsp 98.9 2.1E-09 8.7E-14 80.6 6.9 203 23-246 229-469 (474) 43 2pbz_A Hypothetical protein; N 98.8 2.4E-08 1E-12 73.7 9.4 252 4-303 2-289 (320) 44 1vkz_A Phosphoribosylamine--gl 98.8 4.5E-07 1.9E-11 65.3 14.7 270 1-309 13-313 (412) 45 3mjf_A Phosphoribosylamine--gl 98.8 3.3E-07 1.4E-11 66.2 14.0 280 4-311 3-319 (431) 46 3n6r_A Propionyl-COA carboxyla 98.7 1.1E-07 4.5E-12 69.4 10.7 192 110-309 98-315 (681) 47 2qf7_A Pyruvate carboxylase pr 98.6 5.6E-07 2.3E-11 64.7 11.7 189 111-308 118-334 (1165) 48 2z04_A Phosphoribosylaminoimid 98.6 1.9E-06 7.9E-11 61.2 12.6 257 4-308 1-276 (365) 49 2io8_A Bifunctional glutathion 98.0 3.3E-05 1.4E-09 53.1 9.4 200 7-229 381-601 (619) 50 2vob_A Trypanothione synthetas 97.7 0.0017 7E-08 41.9 13.6 188 6-229 397-616 (652) 51 2cqy_A Propionyl-COA carboxyla 97.4 7.3E-05 3.1E-09 50.9 3.3 85 123-208 5-101 (108) 52 3k1t_A Glutamate--cysteine lig 95.4 0.048 2E-06 32.4 6.8 88 159-246 280-380 (432) 53 1wr2_A Hypothetical protein PH 92.6 0.11 4.8E-06 29.9 4.2 80 135-216 34-127 (238) 54 2nu8_B SCS-beta, succinyl-COA 88.9 0.48 2E-05 25.8 4.5 71 133-204 15-103 (388) 55 3fro_A GLGA glycogen synthase; 86.8 0.41 1.7E-05 26.3 3.1 39 3-44 1-44 (439) 56 2iuy_A Avigt4, glycosyltransfe 86.5 0.65 2.7E-05 24.9 4.0 43 3-45 2-57 (342) 57 2p6p_A Glycosyl transferase; G 86.2 0.7 2.9E-05 24.8 4.0 37 5-45 1-38 (384) 58 2gek_A Phosphatidylinositol ma 85.2 0.51 2.1E-05 25.7 2.9 40 3-44 19-61 (406) 59 2jjm_A Glycosyl transferase, g 84.1 0.73 3.1E-05 24.6 3.3 40 3-44 14-53 (394) 60 1iir_A Glycosyltransferase GTF 83.3 1.1 4.6E-05 23.5 3.9 38 5-46 1-39 (415) 61 3dhn_A NAD-dependent epimerase 82.6 1.3 5.4E-05 23.0 4.1 39 1-46 1-41 (227) 62 3ia7_A CALG4; glycosysltransfe 81.6 1.6 6.8E-05 22.4 4.3 40 1-45 2-42 (402) 63 3iaa_A CALG2; glycosyltransfer 79.8 1.9 7.9E-05 21.9 4.1 40 2-45 18-58 (416) 64 2hy5_A Putative sulfurtransfer 79.2 1.6 6.6E-05 22.5 3.6 37 5-41 1-38 (130) 65 2fp4_B Succinyl-COA ligase [GD 79.1 2.2 9.4E-05 21.4 4.3 36 135-170 17-56 (395) 66 3cky_A 2-hydroxymethyl glutara 78.4 2.9 0.00012 20.7 4.7 106 1-129 1-113 (301) 67 2qzs_A Glycogen synthase; glyc 77.2 1.3 5.3E-05 23.1 2.6 36 5-43 1-42 (485) 68 1rrv_A Glycosyltransferase GTF 77.1 1.9 8.1E-05 21.9 3.5 38 5-46 1-39 (416) 69 2r60_A Glycosyl transferase, g 76.3 3.9 0.00016 19.8 5.2 41 1-42 4-57 (499) 70 2iw1_A Lipopolysaccharide core 75.8 2 8.3E-05 21.8 3.3 37 5-44 1-40 (374) 71 1rzu_A Glycogen synthase 1; gl 71.3 3 0.00012 20.6 3.3 40 5-44 1-43 (485) 72 2d1p_A TUSD, hypothetical UPF0 69.2 3.6 0.00015 20.1 3.4 39 3-41 11-50 (140) 73 1wwk_A Phosphoglycerate dehydr 67.4 3.9 0.00016 19.9 3.2 38 229-277 223-260 (307) 74 3c48_A Predicted glycosyltrans 67.2 4.1 0.00017 19.7 3.3 40 3-43 19-67 (438) 75 2hy5_B Intracellular sulfur ox 67.1 3.5 0.00015 20.2 2.9 43 3-45 4-46 (136) 76 1rtt_A Conserved hypothetical 67.0 4.8 0.0002 19.3 3.6 41 1-46 3-47 (193) 77 3fgn_A Dethiobiotin synthetase 58.9 8.8 0.00037 17.5 4.0 38 4-43 25-63 (251) 78 2iyf_A OLED, oleandomycin glyc 58.8 8.9 0.00037 17.5 4.5 38 5-46 8-46 (430) 79 2d13_A Hypothetical protein PH 56.8 7.8 0.00033 17.9 3.2 34 1-41 1-34 (227) 80 1y81_A Conserved hypothetical 54.4 10 0.00044 17.1 4.3 41 2-46 12-52 (138) 81 1f0k_A MURG, UDP-N-acetylgluco 52.0 11 0.00048 16.8 4.6 40 1-44 2-43 (364) 82 3doj_A AT3G25530, dehydrogenas 50.2 12 0.00051 16.6 4.3 35 2-44 19-53 (310) 83 2iya_A OLEI, oleandomycin glyc 48.5 13 0.00054 16.5 3.4 37 5-45 13-50 (424) 84 3mc3_A DSRE/DSRF-like family p 48.4 13 0.00054 16.4 3.7 42 3-45 14-56 (134) 85 1mv8_A GMD, GDP-mannose 6-dehy 44.7 15 0.00062 16.1 4.7 33 5-45 1-33 (436) 86 1sg0_A NRH dehydrogenase [quin 43.9 10 0.00043 17.1 2.1 38 5-47 3-45 (230) 87 2d1p_B TUSC, hypothetical UPF0 43.7 14 0.00059 16.2 2.8 42 4-45 1-42 (119) 88 3oy2_A Glycosyltransferase B73 43.6 9.6 0.0004 17.3 1.9 40 5-45 1-40 (413) 89 3ff4_A Uncharacterized protein 41.9 16 0.00068 15.8 2.9 41 3-47 3-43 (122) 90 2ift_A Putative methylase HI07 41.2 12 0.00051 16.6 2.2 19 26-44 66-85 (201) 91 2hjs_A USG-1 protein homolog; 40.3 17 0.00072 15.6 7.8 103 1-127 3-108 (340) 92 3n05_A NH(3)-dependent NAD(+) 35.5 7.1 0.0003 18.1 0.2 43 1-43 1-45 (590) 93 3h4t_A Glycosyltransferase GTF 35.0 21 0.00087 15.1 2.9 23 24-46 17-39 (404) 94 3gd5_A Otcase, ornithine carba 34.4 19 0.0008 15.4 2.3 77 18-120 57-134 (323) 95 2fhz_A Colicin-E5 immunity pro 30.8 24 0.001 14.7 3.3 33 238-274 20-52 (109) 96 2fhp_A Methylase, putative; al 29.8 19 0.00081 15.3 1.7 12 114-125 73-84 (187) 97 1jx7_A Hypothetical protein YC 28.5 26 0.0011 14.4 3.1 38 4-42 1-41 (117) 98 1vpd_A Tartronate semialdehyde 28.4 27 0.0011 14.4 4.8 105 3-129 4-114 (299) 99 2q3e_A UDP-glucose 6-dehydroge 27.2 28 0.0012 14.3 4.6 37 1-45 2-40 (467) 100 2fpo_A Methylase YHHF; structu 26.9 27 0.0011 14.4 2.0 10 116-125 85-94 (202) 101 1oc2_A DTDP-glucose 4,6-dehydr 26.8 27 0.0011 14.3 2.0 38 1-45 1-38 (348) 102 1dbq_A Purine repressor; trans 26.8 26 0.0011 14.4 1.9 43 2-45 5-47 (289) 103 2gk4_A Conserved hypothetical 25.2 30 0.0013 14.0 3.3 20 23-42 31-50 (232) 104 3ivz_A Nitrilase; alpha-beta s 25.2 18 0.00076 15.5 0.9 39 4-42 1-41 (262) 105 3da5_A Argonaute; PAZ domain, 24.2 17 0.00072 15.7 0.6 28 141-168 14-53 (128) 106 3g0o_A 3-hydroxyisobutyrate de 22.6 34 0.0014 13.7 4.1 34 3-44 6-39 (303) 107 1wxc_B MELC; tyrosinase, binar 22.2 34 0.0014 13.7 3.7 43 214-264 74-116 (134) 108 1u7z_A Coenzyme A biosynthesis 21.4 36 0.0015 13.6 3.3 20 23-42 36-55 (226) 109 3m9w_A D-xylose-binding peripl 21.4 36 0.0015 13.5 3.5 41 3-44 1-41 (313) 110 2h78_A Hibadh, 3-hydroxyisobut 20.4 37 0.0016 13.4 4.7 33 4-44 3-35 (302) 111 2o3j_A UDP-glucose 6-dehydroge 20.2 38 0.0016 13.4 4.7 38 2-45 7-44 (481) 112 2f6u_A GGGPS, (S)-3-O-geranylg 20.2 38 0.0016 13.4 1.7 27 16-42 14-40 (234) 113 3keg_A FMN-dependent NADH-azor 20.1 38 0.0016 13.4 3.5 38 4-46 1-46 (212) No 1 >1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Probab=100.00 E-value=0 Score=622.96 Aligned_cols=312 Identities=42% Similarity=0.740 Sum_probs=300.5 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC Q ss_conf 33189970998884847646799999999889889999541248999899999999998077741265046443521006 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM 83 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f 83 (316) ||||||||||+++++|++|||++||+|||+|||++||++|+||++.+++++|.++++++.++...||....+...+|++| T Consensus 1 mmki~fvmDpi~~i~~~~DTT~~L~~eA~kRGhev~~~~~~dL~i~~~~v~a~~~~v~~~~~~~~~~~~~~~~~~~l~~~ 80 (316) T 1gsa_A 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADL 80 (316) T ss_dssp CCEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGS T ss_pred CCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEEECCCCCCCCCCCCCCEECHHHC T ss_conf 93899993787876987766999999999879979998104289999999999999997168664222242102131227 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHH Q ss_conf 366883288622479999999986235-8504117488752565034334543044310003724556888852143311 Q gi|254780696|r 84 DVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIK 162 (316) Q Consensus 84 D~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~~~P~T~vt~~~~~~~~f~~~~~~vViK 162 (316) |+||+|+|||||+.|++.+++|+.++. ++.|+|+|.++++++||+++++|++++|+|+++++.+++.+|+++++++|+| T Consensus 81 D~I~~R~dPp~d~~y~~~~~~L~~~~~~gv~viN~~~ai~~~~~Kl~~~~~~~~~p~T~v~~~~~~~~~~~~~~~~~V~K 160 (316) T 1gsa_A 81 DVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK 160 (316) T ss_dssp SEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTTTSCCEEEESCHHHHHHHHHHHSSEEEE T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCCCC T ss_conf 43678846997678888878876513478510287799987677777764246789953763566659999714662112 Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEECCCCCCCCCCCCCC Q ss_conf 168854344687448871158899999840013340021053445682699998998863-2122045686000000147 Q gi|254780696|r 163 PLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGG 241 (316) Q Consensus 163 Pl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~Gg 241 (316) |++|+||+||++++..+.+.....+.....+..++++|+|++++.+||+||+|+||++++ +++|.|++||||+|+|+|| T Consensus 161 pl~g~~G~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~D~Rv~vi~g~v~~a~~~r~~~~~~~r~N~~~Gg 240 (316) T 1gsa_A 161 PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGG 240 (316) T ss_dssp CSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCSSCSCCCGGGTC T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCEEEEEECCEEEEEEEEEECCCCCHHHHHHCCC T ss_conf 25678888847981487036889998764067752789985230688369999999987899995068875321000697 Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC Q ss_conf 31110077899999999999999849879999511787889836883037889975199989999999988633 Q gi|254780696|r 242 KAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVASLFWDGIEKIKE 315 (316) Q Consensus 242 ~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~~ 315 (316) +++++++|++++++|.++++.|++.||+|||||+||+|++|||+|||+||+++++++|+|+|+.+||++|+..+ T Consensus 241 ~~~~~~l~~~~~~~~~~~~~~l~~~gl~~~GvDiig~~~~EvNv~sp~g~~~i~~~~g~~ia~~i~~~~~~k~~ 314 (316) T 1gsa_A 241 RGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ 314 (316) T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHHHTC T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 67872589789999999999998759989999875888899978895779999988698999999999999974 No 2 >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle transport, structural genomics, structural genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens} Probab=100.00 E-value=1.1e-37 Score=266.02 Aligned_cols=288 Identities=13% Similarity=0.082 Sum_probs=200.6 Q ss_pred EEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE---------------EEEHHHEEEECCEEEEEEEEEEEECCC----- Q ss_conf 899709988848476467999999998898899---------------995412489998999999999980777----- Q gi|254780696|r 7 IAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF---------------HYTPDQLYMRDSKIYANTQPLSLDEKK----- 66 (316) Q Consensus 7 I~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~---------------~~~~~dL~~~~g~v~A~~~~i~i~~~~----- 66 (316) +||+|+|.......+++++.|+-..+..+|..| -..-.++.+. ...+. T Consensus 2 ~g~~~~p~p~~p~~k~~kilLvi~~~~~~~~~~f~~~~~~~~~~irve~a~~~~~~~~------------~~~~~~~~v~ 69 (344) T 2p0a_A 2 MGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLA------------AYVTGGCMVD 69 (344) T ss_dssp ---------------CCEEEEEECCSSCCGGGGGTTCEETTTEEEEEEEECGGGEEEE------------EETTSCEEEE T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHEECCCCEEEE------------EECCCCEEEC T ss_conf 7546799999886789859999679876789986565543121332002023314689------------8537770450 Q ss_pred CCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHH----HCCCCE Q ss_conf 41265046443521006366883288622479999999986235-8504117488752565034334543----044310 Q gi|254780696|r 67 EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTL 141 (316) Q Consensus 67 ~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~ 141 (316) ..++..+........+.|+||+|..||+...+.+.+.+|+.++. |+.++|+|.+|++|.||.++..+.. .+|+|. T Consensus 70 ~~~~~~~~~~~~~~~~pD~V~~R~~~~~~~~~~~~~~~l~~le~~Gv~~vNs~~ai~~~~dK~~~~~~L~~~g~~~p~~~ 149 (344) T 2p0a_A 70 MQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEK 149 (344) T ss_dssp EC----------CEECCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTT T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCHHHHHHHHHHCCCCCCCCC T ss_conf 31135542013445689989993046633233049999999998797497889999763399999999997499999974 Q ss_pred EE-----CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE Q ss_conf 00-----3724556888852143311168854344687448871158899999840013340021053445682699998 Q gi|254780696|r 142 IS-----RDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL 216 (316) Q Consensus 142 vt-----~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi 216 (316) +. ........+...+.|+|+||++|++|.||+++.. ...+...++.. ..+..++++|+||+.. .|+|++|+ T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~PvvvKp~~g~~G~Gv~~v~~-~~~l~~~~~~~-~~~~~~v~ve~fi~~~--~d~rv~vi 225 (344) T 2p0a_A 150 FPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVEN-QLDFQDITSVV-AMAKTYATTEAFIDSK--YDIRIQKI 225 (344) T ss_dssp SCBCCCEEESSSTTCCCCSSSSEEEEESSCCTTTTEEEECS-HHHHHHHHHHH-HHHTCCEEEEECCCEE--EEEEEEEE T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECC-HHHHHHHHHHH-HCCCCEEEEEECCCCC--EEEEEEEE T ss_conf 11131324567777630369988999798788774377448-78866677654-2256417875022764--89999998 Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEC-----CEEEEEECCCCHHH Q ss_conf 9988632122045686000000147311100778999999999999998498799995117-----87889836883037 Q gi|254780696|r 217 NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIG-----DYITEINVTSPTCI 291 (316) Q Consensus 217 ~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig-----~~i~EvNvtsP~g~ 291 (316) ||++.++++| +..++||+|.+.|+ .+.++++++++++|.++++.|. |+.|+|||++. .|++|||.++++++ T Consensus 226 g~~~~a~~~~-~~~~~~~~n~~~g~-~~~~~~~~~~~~~~~~~~~~l~--~~~~~gVD~i~~~dG~~yvlEvN~~~~~l~ 301 (344) T 2p0a_A 226 GSNYKAYMRT-SISGNWKANTGSAM-LEQVAMTERYRLWVDSCSEMFG--GLDICAVKAVHSKDGRDYIIEVMDSSMPLI 301 (344) T ss_dssp TTEEEEEEEE-ESSSCSSTTSSSEE-EEEECCCHHHHHHHHHHTTGGG--CCSEEEEEEEEETTSCEEEEEEECTTCCCC T ss_pred CCEEEEEEEE-CCCCCCCCCCCCCC-EEECCCCHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCEEEEEECCCCCCCC T ss_conf 9924578872-25764200313685-4550799899999999999819--962799999986899999999889984455 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 88997519998999999998863 Q gi|254780696|r 292 REIHRNGGENVASLFWDGIEKIK 314 (316) Q Consensus 292 ~~~~~~~~~~i~~~i~d~ie~~~ 314 (316) .+.....+.++++.+++.++... T Consensus 302 ~~~~~~~~~~i~dlv~~~~~~~~ 324 (344) T 2p0a_A 302 GEHVEEDRQLMADLVVSKMSQLP 324 (344) T ss_dssp GGGHHHHHHHHHHHHHHHHHTCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHC T ss_conf 63243555539999999998752 No 3 >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Probab=100.00 E-value=1.1e-32 Score=233.30 Aligned_cols=255 Identities=18% Similarity=0.202 Sum_probs=202.8 Q ss_pred HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH Q ss_conf 79999999988988999954124899989999999999807774126504644352100636688328862247999999 Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY 103 (316) Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~ 103 (316) ..+|++|++++||++..+++.+..+. . ......++.+|++++|..+.. ..++... T Consensus 13 e~~l~~a~~~~G~~v~~v~~~~~~~~----------------------~-~~~~~~~~~~d~~~~~~~~~~--~~~~~~~ 67 (280) T 1uc8_A 13 ERMLFERAEALGLPYKKVYVPALPMV----------------------L-GERPKELEGVTVALERCVSQS--RGLAAAR 67 (280) T ss_dssp HHHHHHHHHHHTCCEEEEEGGGCCEE----------------------T-TBCCGGGTTCCEEEECCSSHH--HHHHHHH T ss_pred HHHHHHHHHHCCCEEEEEECCCCCEE----------------------C-CCCCCCCCCCEEEEEEECCCC--CHHHHHH T ss_conf 99999999977998999978976234----------------------4-776443103508999803566--0899999 Q ss_pred HHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCC Q ss_conf 99862358504117488752565034334543----0443100037245568888521-433111688543446874488 Q gi|254780696|r 104 LLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLG 178 (316) Q Consensus 104 ~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~ 178 (316) ++|.+ |+.++|+|.+++.+.||..+.++.+ ++|+|.+.++.+++..+.++.+ |+|+||.+|++|+|+.++... T Consensus 68 ~~e~~--g~~~~n~~~a~~~~~dK~~~~~~l~~~gip~P~~~~~~~~~~~~~~~~~~~~P~VvKP~~g~~g~G~~~~~~~ 145 (280) T 1uc8_A 68 YLTAL--GIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXX 145 (280) T ss_dssp HHHHT--TCCEESCHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHH T ss_pred HHHHC--CCCEECCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 99988--9958799999987469999999999879796887997999999999997099689972888887676532111 Q ss_pred CCC--HHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHH Q ss_conf 711--588999998400133400210534456826999989988632122045686000000147311100778999999 Q gi|254780696|r 179 DRN--FSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDIC 256 (316) Q Consensus 179 ~~~--~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~ 256 (316) +.. .......+......++++||||+. .+.|+|++++||++++++.|. .++|+.|.+.++....+.++++.++++ T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~liqefI~~-~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (280) T 1uc8_A 146 XXXXXXXXXKEVLGGFQHQLFYIQEYVEK-PGRDIRVFVVGERAIAAIYRR--SAHWITNTARGGQAENCPLTEEVARLS 222 (280) T ss_dssp HC------------CTTTTCEEEEECCCC-SSCCEEEEEETTEEEEEEEC----------------CEECCCCHHHHHHH T ss_pred CCCCCHHHHHHHHHCCCCCCEEEEEEECC-CCCEEEEEEECCEEEEEEEEE--CCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 11110136788760347983999998368-883699999799899999952--245555553366444542314559999 Q ss_pred HHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 99999999849879999511----7878898368830378899751999899999999886 Q gi|254780696|r 257 KRIGESLRERGLFFTGIDVI----GDYITEINVTSPTCIREIHRNGGENVASLFWDGIEKI 313 (316) Q Consensus 257 ~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~ 313 (316) .++++.+ |+.|+|||++ |.|++||| +.| |+.+++..+|+|+++.++|+.-.+ T Consensus 223 ~~~~~al---gl~~~gvD~i~~~~g~~viEvN-~rp-g~~~~~~~~g~d~~~~iv~~al~l 278 (280) T 1uc8_A 223 VKAAEAV---GGGVVAVDLFESERGLLVNEVN-HTM-EFKNSVHTTGVDIPGEILKYAWSL 278 (280) T ss_dssp HHHHHHT---TCSEEEEEEEEETTEEEEEEEE-TTC-CCTTHHHHHCCCHHHHHHHHHHHT T ss_pred HHHHHHH---CCCEEEEEEEEECCCEEEEEEC-CCC-CCCHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999983---9987999999989968999980-899-963079887927999999999865 No 4 >1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Probab=99.97 E-value=3.7e-31 Score=223.18 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=186.5 Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHEEEE---CCEEEEEEEEEEEECCCCCEEEECCCCCCC Q ss_conf 3189970998884847646799999999889889999--54124899---989999999999807774126504644352 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQLYMR---DSKIYANTQPLSLDEKKEQYYSLGEEKIID 79 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL~~~---~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~ 79 (316) .||++++| ++..|.+-.+.......++++..- ...++.+. ++... ..+..... ...... T Consensus 2 ~ki~lvid-----~~~~dw~k~f~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~---v~~~~~~~--------~~~~~~ 65 (309) T 1i7n_A 2 AKVLLVVD-----EPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYA---VDMQVLRN--------GTKVVR 65 (309) T ss_dssp EEEEEEEC-----CTTSCHHHHHTTCEETTTEEEEEEEECGGGEEEEEETTSCEE---EEEEECSS--------SSSEEE T ss_pred CEEEEEEC-----CCCCCHHHHHHCCHHCCCEEEEEEECCCCCHHHHHHHCCCEE---EEEEECCC--------CCCCCC T ss_conf 46999975-----898567887310010460105887326431223223338728---99985167--------543310 Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHH----HCC-CCEEE---CCHHHHH Q ss_conf 1006366883288622479999999986235-8504117488752565034334543----044-31000---3724556 Q gi|254780696|r 80 LSQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSE----LMP-PTLIS---RDITQIT 150 (316) Q Consensus 80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~----~~P-~T~vt---~~~~~~~ 150 (316) ....|++|+|..||+...+...+.+|..++. |+.|+|+|.+++.|.||.++.++.. .+| +++++ .+..... T Consensus 66 ~~~~d~v~~r~~~~~~~~~~~~~~~l~~l~~~G~~vins~~ai~~~~dK~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 145 (309) T 1i7n_A 66 SFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHR 145 (309) T ss_dssp EECCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGG T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHH T ss_conf 25797899887887301142599999999983998678389999863879999999972999998862105666378877 Q ss_pred HHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECC Q ss_conf 888852-1433111688543446874488711588999998400133400210534456826999989988632122045 Q gi|254780696|r 151 RFYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPS 229 (316) Q Consensus 151 ~f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~ 229 (316) .+.... .|+|+||++|++|.||++++.. ..+...++.+ ..+...+++|+|++ ...|+|+.|+||++++++ |.+. T Consensus 146 ~~~~~~~~P~vvKp~~g~~G~Gv~~v~~~-~~l~~~~~~~-~~~~~~v~ve~~i~--~~~d~rv~vi~~~~~~~~-~~~~ 220 (309) T 1i7n_A 146 EMLTLPTFPVVVKIGHAHSGMGKVKVENH-YDFQDIASVV-ALTQTYATAEPFID--AKYDIRVQKIGNNYKAYM-RTSI 220 (309) T ss_dssp GGSSCCCSSEEEEESSCSTTTTEEEECSH-HHHHHHHHHH-HHHTCCEEEEECCC--EEEEEEEEEETTEEEEEE-EESS T ss_pred HHHHCCCCCEEEEECCCCCCCCEEEEECH-HHHHHHHHHH-HCCCCCEEEEEEEC--CCCEEEEEEECCEEEEEE-EEEC T ss_conf 76522699989997988899887999655-8899999999-72398158987614--672589999999888999-9954 Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCCHH-HHHHHHHCCCCHH Q ss_conf 68600000014731110077899999999999999849879999511----7-8788983688303-7889975199989 Q gi|254780696|r 230 EVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSPTC-IREIHRNGGENVA 303 (316) Q Consensus 230 ~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP~g-~~~~~~~~~~~i~ 303 (316) .++||+|.+.|+.. ...++++++++|.++++.+ .|+.++|||++ | .|++||| +||++ ..+.......+++ T Consensus 221 ~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~gvD~~~~~dG~~yvlEvN-~~p~~~~~~~~~~~~~~i~ 296 (309) T 1i7n_A 221 SGNWKTNTGSAMLE-QIAMSDRYKLWVDACSEMF--GGLDICAVKAVHGKDGKDYIFEVM-DCSMPLIGEHQVEDRQLIT 296 (309) T ss_dssp CTTTSCSCCCSSEE-EECCCHHHHHHHHHHTTGG--GCCSEEEEEEEEETTSCEEEEEEE-CTTCCCCSSCHHHHHHHHH T ss_pred CCCHHHCCCCCCCC-CCCCCHHHHHHHHHHHHHH--CCCCEEEEEEEECCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHH T ss_conf 66412120256434-6777769999999999985--899689999999699999999982-9883321145777762099 Q ss_pred HHHHHHHHHHH Q ss_conf 99999998863 Q gi|254780696|r 304 SLFWDGIEKIK 314 (316) Q Consensus 304 ~~i~d~ie~~~ 314 (316) +.+++.+++.. T Consensus 297 dlv~~~~~~~~ 307 (309) T 1i7n_A 297 DLVISKMNQLL 307 (309) T ss_dssp HHHHHHHHHHC T ss_pred HHHHHHHHHHH T ss_conf 99999999975 No 5 >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Probab=99.96 E-value=1.5e-29 Score=212.68 Aligned_cols=220 Identities=14% Similarity=0.117 Sum_probs=159.1 Q ss_pred CCEEEEECCCCC---CHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHH----H--HCCCCEEECCHH--HHHH Q ss_conf 636688328862---2479999999986235850411748875256503433454----3--044310003724--5568 Q gi|254780696|r 83 MDVILIRQDPPF---NMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFS----E--LMPPTLISRDIT--QITR 151 (316) Q Consensus 83 fD~i~iR~dPp~---d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~----~--~~P~T~vt~~~~--~~~~ 151 (316) =|+||+|+-++. +..|-+.+..|+.+ |+.++|+|.+|.+|.||.++.... . ..|+|.+..... .... T Consensus 181 PD~Vlvr~~~~~~~e~~d~r~lL~~Le~~--Gip~vNs~~sI~~~~DK~~~~~~L~~~~~~l~~p~~~li~~~~~~~~~~ 258 (422) T 1pk8_A 181 PDFVLIRQHAFSMARNGDYRSLVIGLQYA--GIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKE 258 (422) T ss_dssp CSEEEECSCSBCSSTTCBCHHHHHHHHHT--TCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGG T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHC--CCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHH T ss_conf 98899866666633241699999999973--9870499999998605299999999732779999600035321256777 Q ss_pred HHHH-HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC Q ss_conf 8885-214331116885434468744887115889999984001334002105344568269999899886321220456 Q gi|254780696|r 152 FYLE-MKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE 230 (316) Q Consensus 152 f~~~-~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~ 230 (316) +... ..|+|+||.+|++|.||++++ +...+..+++.+.. +...+++||||+. ..|+|++++||+++++++|. .. T Consensus 259 ~~~~~~~PvVVKp~~g~~G~Gv~~V~-~~~el~~~~~~~~~-~~~~v~vEefI~~--~~dirv~vig~~v~a~~~~~-~~ 333 (422) T 1pk8_A 259 MLSSTTYPVVVKMGHAHSGMGKVKVD-NQHDFQDIASVVAL-TKTYATAEPFIDA--KYDVRVQKIGQNYKAYMRTS-VS 333 (422) T ss_dssp CCCCSSSSEEEEESSCCTTTTEEEEC-SHHHHHHHHHHHHH-HTSCEEEEECCCE--EEEEEEEEETTEEEEEEEEE-SS T ss_pred HHHCCCCEEEEEECCCCCCCCEEEEC-CCCHHHHHHHHHHH-HCCEEEEEECCCC--CEEEEEEEECCEEEEEEEEE-CC T ss_conf 65414872999757878778889977-92179999999986-1884999962578--67999999899899999982-68 Q ss_pred CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCCHHH-HHHHHHCCCCHHH Q ss_conf 8600000014731110077899999999999999849879999511----7-87889836883037-8899751999899 Q gi|254780696|r 231 VDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSPTCI-REIHRNGGENVAS 304 (316) Q Consensus 231 ~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP~g~-~~~~~~~~~~i~~ 304 (316) ++|++|. .||..+.++++++.+++|.++++.|. |+.++|||+| | .||+||| .||.++ .+........|++ T Consensus 334 ~~~k~n~-~~g~~~~~~l~e~~k~~a~~a~~alg--g~~i~gVD~i~~kdG~~yilEVN-~sp~~l~~~~~~~d~~~i~d 409 (422) T 1pk8_A 334 GNWKTNT-GSAMLEQIAMSDRYKLWVDTCSEIFG--GLDICAVEALHGKDGRDHIIEVV-GSSMPLIGDHQDEDKQLIVE 409 (422) T ss_dssp SCSSTTS-SCEEEEEECCCHHHHHHHHHHTTGGG--CCSEEEEEEEEETTSCEEEEEEE-CTTCCCCTTCHHHHHHHHHH T ss_pred CCCEECC-CCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHH T ss_conf 8756223-47644314879999999999999818--98679999999279988999967-99743443126678889999 Q ss_pred HHHHHHHHH Q ss_conf 999999886 Q gi|254780696|r 305 LFWDGIEKI 313 (316) Q Consensus 305 ~i~d~ie~~ 313 (316) .+++.+.+. T Consensus 410 lv~~~~~~~ 418 (422) T 1pk8_A 410 LVVNKMTQA 418 (422) T ss_dssp HHHHHHHCC T ss_pred HHHHHHHHH T ss_conf 999999987 No 6 >2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4- 5/6-kinase, inositol phosphate, inositolphosphate, polyphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Probab=99.95 E-value=1.5e-26 Score=193.01 Aligned_cols=257 Identities=13% Similarity=0.155 Sum_probs=178.0 Q ss_pred CCCEEEEEECCHHHCCCCCCCHH---HHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC Q ss_conf 53318997099888484764679---999999988988999954124899989999999999807774126504644352 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTF---AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID 79 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~---~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~ 79 (316) |.+|||+.|. .++.|++ ++..+|.++|+++..++++.- + .. T Consensus 17 ~~~riG~~~~------e~k~s~~~~~~~~~~~~~~G~~~v~iD~~~~-----------------------l-------~~ 60 (346) T 2q7d_A 17 KGKRVGYWLS------EKKIKKLNFQAFAELCRKRGMEVVQLNLSRP-----------------------I-------EE 60 (346) T ss_dssp TTCEEEEECC------HHHHHHHTHHHHHHHHHTTTCEEEECCTTSC-----------------------S-------GG T ss_pred HCCEEEEEEC------HHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----------------------H-------HH T ss_conf 2477999964------3157564289999999978977999259999-----------------------5-------77 Q ss_pred HHHCCEEEEECCCCCC------HHHHHHHHHHHHH---CCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC-- Q ss_conf 1006366883288622------4799999999862---358504117488752565034334543----044310003-- Q gi|254780696|r 80 LSQMDVILIRQDPPFN------MHYITSTYLLEKI---NPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR-- 144 (316) Q Consensus 80 L~~fD~i~iR~dPp~d------~~yi~~~~~Le~~---~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~-- 144 (316) ...||+|+.+.+.-|. .+.......|+.. ..++.|+|+|.+++.|.||+++.+..+ ++|+|.+.. T Consensus 61 q~~~Dvii~K~~~~~~~~~~~~~e~~~~~~~Le~~~~~~~g~~Vid~~~si~~~~dK~~~~~~l~~~~ip~p~~~v~~~~ 140 (346) T 2q7d_A 61 QGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140 (346) T ss_dssp GCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCC T ss_pred CCCCEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 69833999645055421577743113799999999852899489679999887638999999999769999991586787 Q ss_pred -------CHHHHHHHHHHH---HHHHHHCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEE Q ss_conf -------724556888852---14331116--885434468744887115889999984001334002105344568269 Q gi|254780696|r 145 -------DITQITRFYLEM---KDIIIKPL--YGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKR 212 (316) Q Consensus 145 -------~~~~~~~f~~~~---~~vViKPl--~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~R 212 (316) +.++....++.. .|+|+||+ .|+.|.|+.++.. ...+.. ...++++|||++. .+.|+| T Consensus 141 ~~~~~~~~~~e~~~~~~~~~l~~P~VvKP~~a~g~~s~g~~iv~~-~~~l~~--------~~~~~l~Qefi~~-~~~~~k 210 (346) T 2q7d_A 141 FMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFN-QEGLNA--------IQPPCVVQNFINH-NAVLYK 210 (346) T ss_dssp EEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECS-GGGTTC----------CCEEEEECCCC-TTEEEE T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEC-CHHHHH--------CCHHHHHHHHHCC-CCEEEE T ss_conf 421245453148999975064687489677479987664289835-103222--------0378785134148-977999 Q ss_pred EEEECCEEEEEEEEECCCCCCCCCCCCCCCE-----------------------EEEECCHHHHHHHHHHHHHHHHCCCE Q ss_conf 9998998863212204568600000014731-----------------------11007789999999999999984987 Q gi|254780696|r 213 ILLLNGKPVGAVNRIPSEVDNRSNIHAGGKA-----------------------ELTKLTKIDLDICKRIGESLRERGLF 269 (316) Q Consensus 213 v~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~-----------------------~~~~lt~~~~~i~~~~~~~L~~~gl~ 269 (316) ++|+|+++.++++|..+.++|+.+.+.++.. ...++.++.+++|.++.+.| |+. T Consensus 211 v~vvG~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~la~~a~~~l---Gl~ 287 (346) T 2q7d_A 211 VFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQAL---GVS 287 (346) T ss_dssp EEEETTEEEEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHH---CCC T ss_pred EEEECCEEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCC T ss_conf 99989988999995268876200136676311445324223445556666655556670699999999999984---998 Q ss_pred EEEEEEE-----C-CEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC Q ss_conf 9999511-----7-87889836883037889975199989999999988633 Q gi|254780696|r 270 FTGIDVI-----G-DYITEINVTSPTCIREIHRNGGENVASLFWDGIEKIKE 315 (316) Q Consensus 270 ~~GiDii-----g-~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~~ 315 (316) ++|||+| | .||+||| |.| |+.+++ |+...++++|.++.+ T Consensus 288 l~GvDii~~~~~g~~yViEVN-~~P-G~~gi~-----~~~~~~~~~l~~~~~ 332 (346) T 2q7d_A 288 LFGIDIIINNQTGQHAVIDIN-AFP-GYEGVS-----EFFTDLLNHIATVLQ 332 (346) T ss_dssp EEEEEEEECTTTCCEEEEEEE-ESC-CCTTCT-----THHHHHHHHHHHHHH T ss_pred EEEEEEEEECCCCCEEEEEEE-CCC-CCCCHH-----HHHHHHHHHHHHHHH T ss_conf 899999998589988999970-898-745611-----499999999999983 No 7 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=99.80 E-value=7.9e-17 Score=129.27 Aligned_cols=270 Identities=16% Similarity=0.174 Sum_probs=171.1 Q ss_pred CCCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC Q ss_conf 9653318997099888-484764679999999988988999954124899989999999999807774126504644352 Q gi|254780696|r 1 MKKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID 79 (316) Q Consensus 1 mkk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~ 79 (316) |+| ||+++.-=.+. -+.+-+|--++.++.++.||+++.+++.+..+. .+. T Consensus 1 m~~--ki~vl~GG~S~E~~iSl~Sg~~i~~aL~~~g~~v~~id~~~~~~~---------------------------~l~ 51 (306) T 1iow_A 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT---------------------------QLK 51 (306) T ss_dssp CCC--EEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGG---------------------------GTT T ss_pred CCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH---------------------------HHH T ss_conf 985--099993858731286999999999999886998999899855488---------------------------886 Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHH------- Q ss_conf 100636688328862247999999998623585-04117488752565034334543----044310003724------- Q gi|254780696|r 80 LSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDIT------- 147 (316) Q Consensus 80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~------- 147 (316) -..+|++|.-.-=+...++ ..-.+||.+ +. ++-.+|.+...|.||..+-++.. ++|+..+....+ T Consensus 52 ~~~~d~vf~~~hG~~~ed~-~~~~~le~~--~ipy~Gs~~~~~~l~~dK~~~K~~~~~~gi~tp~~~~~~~~~~~~~~~~ 128 (306) T 1iow_A 52 SMGFQKVFIALHGRGGEDG-TLQGMLELM--GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD 128 (306) T ss_dssp TTTEEEEEECCCSTTTSSS-HHHHHHHHH--TCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCT T ss_pred HCCCCEEEEECCCCCCCCH-HHHHHHHHC--CCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHH T ss_conf 4489889993468854137-999999987--9638258889999885918789987742688898577730110223047 Q ss_pred HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEE Q ss_conf 5568888521-433111688543446874488711588999998400133400210534456826999989988632122 Q gi|254780696|r 148 QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNR 226 (316) Q Consensus 148 ~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R 226 (316) ......+..+ |+|+||.+|.+|.||.+++ +..++...++... .+...+++|+||+ +.++.|.++++.....+.. T Consensus 129 ~~~~~~~~l~~P~vvKP~~~g~s~Gi~~~~-~~~el~~~~~~~~-~~~~~~lvEefi~---G~E~~v~v~~~~~~~~~~i 203 (306) T 1iow_A 129 KQLAEISALGLPVIVKPSREGSSVGMSKVV-AENALQDALRLAF-QHDEEVLIEKWLS---GPEFTVAILGEEILPSIRI 203 (306) T ss_dssp HHHHHHHTTCSSEEEEETTCCTTTTCEEES-SGGGHHHHHHHHT-TTCSEEEEEECCC---CCEEEEEEETTEECCCEEE T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHH-HCCHHHHHHHCCC---CCEEEEEEECCCCCCEEEE T ss_conf 788887612998899828988888851258-9999999999866-3483566764567---9779999855767876999 Q ss_pred ECCCCCCC--CCCCCCCCE--EEE----ECCHHHHHHHHHHHHHHHHCCC-EEEEEEEE----C-CEEEEEECCCCH--- Q ss_conf 04568600--000014731--110----0778999999999999998498-79999511----7-878898368830--- Q gi|254780696|r 227 IPSEVDNR--SNIHAGGKA--ELT----KLTKIDLDICKRIGESLRERGL-FFTGIDVI----G-DYITEINVTSPT--- 289 (316) Q Consensus 227 ~~~~~~~r--~Nl~~Gg~~--~~~----~lt~~~~~i~~~~~~~L~~~gl-~~~GiDii----g-~~i~EvNvtsP~--- 289 (316) .+.++-+. .....+... .+. .+.++.+++|.++...| |+ .++.||++ | .|++||| |.|+ T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~k~~~~l---g~~g~~riDf~~d~~g~~~~lEvN-~~Pglt~ 279 (306) T 1iow_A 204 QPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTL---GCKGWGRIDVMLDSDGQFYLLEAN-TSPGMTS 279 (306) T ss_dssp ECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHHHHHHHH---TCCSEEEEEEEECTTSCEEEEEEE-SSCCCST T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCCCEEEEEEE-CCCCCCC T ss_conf 636764320001013433457777887677666899999999994---996479999999589989999864-9999887 Q ss_pred --HHHHHHHHCCCCHHHHHHHHHH Q ss_conf --3788997519998999999998 Q gi|254780696|r 290 --CIREIHRNGGENVASLFWDGIE 311 (316) Q Consensus 290 --g~~~~~~~~~~~i~~~i~d~ie 311 (316) .+...-+.+|++.++.+-.-|+ T Consensus 280 ~s~~~~~~~~~G~~~~~li~~ii~ 303 (306) T 1iow_A 280 HSLVPMAARQAGMSFSQLVVRILE 303 (306) T ss_dssp TCHHHHHHHHTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCHHHHHHHHHH T ss_conf 678999999829899999999998 No 8 >2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A* Probab=99.77 E-value=1e-16 Score=128.49 Aligned_cols=286 Identities=13% Similarity=0.117 Sum_probs=163.9 Q ss_pred CCCCCEEEEEECCHHHCCCCCC----CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE---- Q ss_conf 9653318997099888484764----67999999998898899995412489998999999999980777412650---- Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKED----STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL---- 72 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~D----TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~---- 72 (316) |.| +||++++= ......+ |-.+++++..+.||+|+.+.... ++.-. ............+.+.. T Consensus 1 m~k-~~I~vl~G---G~S~E~~iSl~Sg~~v~~aL~~~g~~v~~i~i~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~ 71 (364) T 2i87_A 1 MTK-ENICIVFG---GKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITN----DGDWR-KQNNITAEIKSTDELHLENGE 71 (364) T ss_dssp --C-EEEEEEEE---CSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECT----TCCEE-EECCCCSCCCSGGGSCGGGSE T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECC----CCCEE-ECCCCCHHHCCCCCCCCCCCC T ss_conf 999-88999959---1875439999999999998777399799999848----98755-258741111157510237664 Q ss_pred ----CC--CCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCE Q ss_conf ----46--44352100636688328862247999999998623585-04117488752565034334543----044310 Q gi|254780696|r 73 ----GE--EKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTL 141 (316) Q Consensus 73 ----~~--~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~ 141 (316) .. ........+|++|+-.-.+...++.- -.+||.+ ++ ++-+++.+...|.||..+-++.+ ++|+++ T Consensus 72 ~~~~~~~~~~~~~~~~~D~v~~~~hG~~gedg~~-q~~le~~--~ipy~G~~~~a~~i~~DK~~~k~~l~~~gIptp~~~ 148 (364) T 2i87_A 72 ALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTI-QGLFEVL--DVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYI 148 (364) T ss_dssp EECSSGGGGBCTTSSBCSEEEEECCCSSSCTTHH-HHHHHHH--TCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEE T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHH-HHHHHHC--CCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCEE T ss_conf 1008888887752468888999267854326599-9999855--888347982454310038999999998699869866 Q ss_pred EECCHHH-------HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE Q ss_conf 0037245-------568888521-43311168854344687448871158899999840013340021053445682699 Q gi|254780696|r 142 ISRDITQ-------ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRI 213 (316) Q Consensus 142 vt~~~~~-------~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv 213 (316) +....+. +..+.++.+ |+|+||..|.+|.||.++. +..++...++...+ +...+++|+|++. .++-+ T Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~PvvvKP~~~g~S~Gv~~v~-~~~el~~~i~~~~~-~~~~~lvEe~i~g---~E~~~ 223 (364) T 2i87_A 149 SFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCN-NEAELKEGIKEAFQ-FDRKLVIEQGVNA---REIEV 223 (364) T ss_dssp EEEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEES-SHHHHHHHHHHHHT-TCSEEEEEECCCC---EEEEE T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHHH-CCHHHHHHCCCCC---EEEEE T ss_conf 7613422200588999999762898699846777787616844-78999999999975-0845444304276---79999 Q ss_pred EEE--CCEEE-EEEEEECCCCCCCCCCC--CCCC--EEEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE----C Q ss_conf 998--99886-32122045686000000--1473--1110077----8999999999999998498-79999511----7 Q gi|254780696|r 214 LLL--NGKPV-GAVNRIPSEVDNRSNIH--AGGK--AELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI----G 277 (316) Q Consensus 214 ~vi--~g~~v-~a~~R~~~~~~~r~Nl~--~Gg~--~~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii----g 277 (316) .++ ++... .....++..+.+...-. .+.. ..+..++ ++.+++|.++.+.| |+ .+++||++ | T Consensus 224 ~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~l---g~~g~~rvDf~~d~~g 300 (364) T 2i87_A 224 AVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKAT---DCSGLVRADFFVTEDN 300 (364) T ss_dssp EEEESSSCEECCCEEECCSCCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHT---TCCEEEEEEEEECTTC T ss_pred EEEECCCCCEEECEEEEECCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCC T ss_conf 8511356630001048721555554332034651350588889899999999999999980---9920899999995899 Q ss_pred -CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHH Q ss_conf -878898368830-----378899751999899999 Q gi|254780696|r 278 -DYITEINVTSPT-----CIREIHRNGGENVASLFW 307 (316) Q Consensus 278 -~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~ 307 (316) .|++||| |.|| .+...-+..|++..+.+- T Consensus 301 ~~yvlEvN-~~Pglt~~S~~~~~~~~~G~s~~~li~ 335 (364) T 2i87_A 301 QIYINETN-AMPGFTAFSMYPKLWENMGLSYPELIT 335 (364) T ss_dssp CEEEEEEE-SSCCCSTTSHHHHHHHHTTCCHHHHHH T ss_pred CEEEEEEE-CCCCCCCCCHHHHHHHHCCCCHHHHHH T ss_conf 79999861-989988555899999982999999999 No 9 >3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Probab=99.73 E-value=1.3e-15 Score=121.40 Aligned_cols=295 Identities=16% Similarity=0.124 Sum_probs=170.9 Q ss_pred CCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEH--HHEEE-ECCEEEE--------------EEEEEEEEC Q ss_conf 53318997099888-484764679999999988988999954--12489-9989999--------------999999807 Q gi|254780696|r 3 KIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTP--DQLYM-RDSKIYA--------------NTQPLSLDE 64 (316) Q Consensus 3 k~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~--~dL~~-~~g~v~A--------------~~~~i~i~~ 64 (316) |.|||++++==.+. -+++--|....+.+..++||+++.+.. +.-++ .+..... ....+.+.. T Consensus 9 ~K~kI~vl~GG~S~E~eVSl~S~~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373) T 3lwb_A 9 RRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSGTELALPA 88 (373) T ss_dssp TCEEEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC-------------------------- T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCHHHHHCCCCHHHHHHCCCCCEEECCC T ss_conf 98779999686774069999999999997555088699999848997896477455541464101234226773331145 Q ss_pred C---CCCEEEECCCCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH---- Q ss_conf 7---7412650464435210063668832-8862247999999998623585-04117488752565034334543---- Q gi|254780696|r 65 K---KEQYYSLGEEKIIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE---- 135 (316) Q Consensus 65 ~---~~~~f~~~~~~~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~---- 135 (316) . ...+..........+.++|++|+=. .++-....+-. +||.+ +. ++-.++.+...|-||..+-++.. T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lHG~~GEdG~iQ~--lle~~--~ipytGs~~~asai~~dK~~tk~il~~~gI 164 (373) T 3lwb_A 89 DPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG--LLELA--GVPYVGAGVLASAVGMDKEFTKKLLAADGL 164 (373) T ss_dssp --------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHH--HHHHH--TCCBSSSCHHHHHHHHBHHHHHHHHHHTTC T ss_pred CCCCCCCEEECCCCHHHHCCCCCEEEECCCCCCCCHHHHHH--HHHHC--CCCEECCCHHHHHHHHCCHHHHHHHHHCCC T ss_conf 65446604531542022204678899877687743469999--99986--999848299999977383989999997286 Q ss_pred HCCCCEEECCHHH--HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEE Q ss_conf 0443100037245--568888521-4331116885434468744887115889999984001334002105344568269 Q gi|254780696|r 136 LMPPTLISRDITQ--ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKR 212 (316) Q Consensus 136 ~~P~T~vt~~~~~--~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~R 212 (316) ++|++.+.++... .....++.+ |+|+||..|.++.||.++... ..+...++.... +...+++|+||+ +.++- T Consensus 165 ptp~~~~~~~~~~~~~~~~~~~l~~P~vVKP~~~GsS~GV~~v~~~-~el~~~~~~~~~-~~~~vlvE~~I~---g~E~~ 239 (373) T 3lwb_A 165 PVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSW-DQLPAAVARARR-HDPKVIVEAAIS---GRELE 239 (373) T ss_dssp CBCCEEEECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSG-GGHHHHHHHHHT-TCSSEEEEECCE---EEEEE T ss_pred CCCCCHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCH-HHHHHHHHHHHC-CCCCCCCEEEEC---CCEEE T ss_conf 7553010010135799999886199889997888641797630668-888888886430-375324225761---50799 Q ss_pred EEEEC---CEEEE----EEEEEC------CCCCCCCCCCCCCCE--EEEECCHH----HHHHHHHHHHHHHHCCC-EEEE Q ss_conf 99989---98863----212204------568600000014731--11007789----99999999999998498-7999 Q gi|254780696|r 213 ILLLN---GKPVG----AVNRIP------SEVDNRSNIHAGGKA--ELTKLTKI----DLDICKRIGESLRERGL-FFTG 272 (316) Q Consensus 213 v~vi~---g~~v~----a~~R~~------~~~~~r~Nl~~Gg~~--~~~~lt~~----~~~i~~~~~~~L~~~gl-~~~G 272 (316) |-+++ |.+.. .+...+ .--|+.+....++.. .+..++++ .+++|.++.+.| |+ .+++ T Consensus 240 v~vi~~~~g~~~~~~~~ei~~~~~~~~~~~~~dy~~ky~~~~~~~~~pa~~~~~~~~~i~~~A~~a~~aL---g~~g~~R 316 (373) T 3lwb_A 240 CGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAI---DCRGLAR 316 (373) T ss_dssp EEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHT---TCCSEEE T ss_pred EEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEE T ss_conf 9999615786210101027713312554332443330035775346787678899999999999999996---9940898 Q ss_pred EEEE----CCEEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHH Q ss_conf 9511----7878898368830-----378899751999899999999 Q gi|254780696|r 273 IDVI----GDYITEINVTSPT-----CIREIHRNGGENVASLFWDGI 310 (316) Q Consensus 273 iDii----g~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~i 310 (316) ||++ |.|++||| |.|| .+..+-++.|++..+.+-.-| T Consensus 317 vDf~~~~~~~yvlEvN-t~PGlt~~S~~p~~a~~~G~s~~~li~~ii 362 (373) T 3lwb_A 317 VDFFLTDDGPVINEIN-TMPGFTTISMYPRMWAASGVDYPTLLATMI 362 (373) T ss_dssp EEEEEETTEEEEEEEE-SSCCCSTTSHHHHHHHHTTCCHHHHHHHHH T ss_pred EEEEEECCEEEEEEEC-CCCCCCCCCHHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999907999871-999988567899999980999999999999 No 10 >2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1} Probab=99.71 E-value=3.8e-16 Score=124.79 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=157.3 Q ss_pred CEEEEEECCHHHCCCCCCC----HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEE-----------EEEEEEECCCCCE Q ss_conf 3189970998884847646----799999999889889999541248999899999-----------9999980777412 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDS----TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYAN-----------TQPLSLDEKKEQY 69 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DT----T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~-----------~~~i~i~~~~~~~ 69 (316) ||||+++= .-....|- -.++..+..+||+.+-+++.+..++........ ...+....+. T Consensus 21 mkiaVl~G---G~S~Eh~vSl~Sa~~i~~aL~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 94 (367) T 2pvp_A 21 MEFCVLFG---GASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKKLPPLILTHNG--- 94 (367) T ss_dssp CCEEEEEE---CSSTTHHHHHHHHHHHHHHHGGGEEEEEEECTTCCEEECCGGGCSHHHHHTGGGSCCCCBEEETTE--- T ss_pred CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHCCCC--- T ss_conf 88999908---585301879999999999874259789999389988983713214432344662320012210365--- Q ss_pred EEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC Q ss_conf 6504644352100636688328862247999999998623585-04117488752565034334543----044310003 Q gi|254780696|r 70 YSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR 144 (316) Q Consensus 70 f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~ 144 (316) +...........++|++|.-...++..++. .-.+||.+ +. ++-.++.+...|.||..+-++.. ++|++.+.+ T Consensus 95 ~~~~~~~~~~~~~~d~vf~~~HG~~GEdG~-iq~~Le~~--gipy~Gs~~~as~i~~DK~~~k~~l~~~gI~tp~~~~~~ 171 (367) T 2pvp_A 95 LLKNSFLGAKIIELPLVINLVHGGDGEDGK-LASLLEFY--RIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLN 171 (367) T ss_dssp EEEEETTEEEEEECCSEEECCCSTTTTSSH-HHHHHHHT--TCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEEC T ss_pred CCCCCCCCCCEECCCEEEECCCCCCCCCHH-HHHHHHHC--CCCEECCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC T ss_conf 210012466211268999967898764579-99999986--996778789999975595998888987299956311344 Q ss_pred CHHHHHHH-HHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC--CEE Q ss_conf 72455688-8852-1433111688543446874488711588999998400133400210534456826999989--988 Q gi|254780696|r 145 DITQITRF-YLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN--GKP 220 (316) Q Consensus 145 ~~~~~~~f-~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~--g~~ 220 (316) +.+....+ ..+. .|+|+||..|.+|.||.++. +..++...++..... ...+++||||+... ++.|.+++ +.. T Consensus 172 ~~~~~~~~~~~~~~~P~vvKP~~~gsS~GV~~v~-~~~el~~ai~~~~~~-~~~vlVEe~I~G~~--E~~v~v~~~~~~~ 247 (367) T 2pvp_A 172 EKNRANALDLMNFNFPFIVKPSNAGSSLGVNVVK-EEKELIYALDSAFEY-SKEVLIEPFIQGVK--EYNLAGCKIKKDF 247 (367) T ss_dssp TTTGGGHHHHCCSCSCEEEEESSCCTTTTCEEES-STTSHHHHHHHHTTT-CSCEEEEECCTTCE--EEEEEEEEETTEE T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE-CCHHHHHHHHHHHHH-CCCEEEEEECCCCE--EEEEEEECCCCCE T ss_conf 4447889998765998899956645789878996-133179999998761-44135788627978--7478774268952 Q ss_pred EEEEEEECCCCC---CCCCCCCCCCE--EEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----CCEEEEEECC Q ss_conf 632122045686---00000014731--110077899----9999999999998498-79999511----7878898368 Q gi|254780696|r 221 VGAVNRIPSEVD---NRSNIHAGGKA--ELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI----GDYITEINVT 286 (316) Q Consensus 221 v~a~~R~~~~~~---~r~Nl~~Gg~~--~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii----g~~i~EvNvt 286 (316) ...+.+.+..++ +.+....++.. .+..++++. +++|.++.+.| |+ -+++||++ +.|++||| | T Consensus 248 ~~~~i~~~~~~~~~dy~~k~~~~~~~~~~pa~l~~~~~~~i~~~a~k~~~~l---g~~G~~rvDf~~~~~~~yviEIN-t 323 (367) T 2pvp_A 248 CFSYIEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDL---FDGAIIRCDFFVIENEVYLNEIN-P 323 (367) T ss_dssp EEEEEEETTTTEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTT---STTCCEEEEEEEETTEEEEEEEE-S T ss_pred EEEEEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCEEEEEEEC-C T ss_conf 6578997145440353032244640424777799999999999999999996---99376999999999999999861-9 Q ss_pred CCHHHHH Q ss_conf 8303788 Q gi|254780696|r 287 SPTCIRE 293 (316) Q Consensus 287 sP~g~~~ 293 (316) .| |+.. T Consensus 324 ~P-G~t~ 329 (367) T 2pvp_A 324 IP-GSLA 329 (367) T ss_dssp SC-GGGG T ss_pred CC-CCCC T ss_conf 89-9973 No 11 >3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} Probab=99.71 E-value=7.3e-15 Score=116.37 Aligned_cols=288 Identities=13% Similarity=0.144 Sum_probs=168.3 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHH----HHHHHHHCCCEEEEEEH--HH-EEEECCEE-------------EEEEEEE Q ss_conf 96533189970998884847646799----99999988988999954--12-48999899-------------9999999 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFA----IALEAQVRGYQIFHYTP--DQ-LYMRDSKI-------------YANTQPL 60 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~----Lm~eAq~RGheV~~~~~--~d-L~~~~g~v-------------~A~~~~i 60 (316) |+| |||++++= ...+..+-|+. ++++..+.||++..+.. +. .++..... ......+ T Consensus 20 M~k-~kv~vl~G---G~S~E~eiSl~Sa~~v~~~L~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (386) T 3e5n_A 20 MRK-IRVGLIFG---GKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGV 95 (386) T ss_dssp -CC-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCE T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCHHHHHCCCCHHHHCCCCCCCCE T ss_conf 876-77999979---78873899999999999975464798999998589987945724643325864440224467604 Q ss_pred EEECCCC-CEEEECCCCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH-- Q ss_conf 9807774-12650464435210063668832-8862247999999998623585-04117488752565034334543-- Q gi|254780696|r 61 SLDEKKE-QYYSLGEEKIIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE-- 135 (316) Q Consensus 61 ~i~~~~~-~~f~~~~~~~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~-- 135 (316) .+..... .... .-.....+.++|++|+=. .++-....+. .+||.+ +. ++-.+|.+...|-||..+-++.+ T Consensus 96 ~~~~~~~~~~~~-~~~~~~~~~~~D~vf~~lhG~~GEdG~iq--~lle~~--gipytGs~~~asal~~DK~~~K~il~~~ 170 (386) T 3e5n_A 96 ALLPGAQQQQLR-PIQPEQALAQIDVVFPIVHGTLGEDGSLQ--GLLRMA--NLPFVGSGVLGSAVAMDKDMAKRVLRDA 170 (386) T ss_dssp EECTTCSSSCEE-ECC--CCCCCCSEEEEEECSHHHHSSHHH--HHHHHT--TCCBSSCCHHHHHHHHBHHHHHHHHHHT T ss_pred EECCCCCHHCCC-CCCCHHHCCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCCCCCCHHHHHHCCCCCCCHHHHHHC T ss_conf 523652010012-34421112568889986778986583999--999974--9997998989996526866108899763 Q ss_pred --HCCCCEEECCHHH----HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCC Q ss_conf --0443100037245----568888521-433111688543446874488711588999998400133400210534456 Q gi|254780696|r 136 --LMPPTLISRDITQ----ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRD 208 (316) Q Consensus 136 --~~P~T~vt~~~~~----~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~ 208 (316) ++|+.+.....+. +....++.+ |+|+||..|.++.||.+++.. .++...+.... .+...+++|+||+ + T Consensus 171 gIptp~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~-~el~~~~~~a~-~~~~~vlvEefI~---G 245 (386) T 3e5n_A 171 RLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTA-DAFAAALALAL-AYDHKVLVEAAVA---G 245 (386) T ss_dssp TCCBCCEEEEEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSG-GGHHHHHHHHT-TTCSEEEEEECCC---S T ss_pred CCCCCCCEEECCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEECCH-HHHHHHHHHHH-CCCHHHCCCCCCC---E T ss_conf 89875311100222035678888886189724345787668885265069-99999998621-2340001233112---0 Q ss_pred CCEEEEEECCE---EEEEEEEECCCCC--CCCCCCCCCCE---EEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEE Q ss_conf 82699998998---8632122045686--00000014731---110077----8999999999999998498-7999951 Q gi|254780696|r 209 GDKRILLLNGK---PVGAVNRIPSEVD--NRSNIHAGGKA---ELTKLT----KIDLDICKRIGESLRERGL-FFTGIDV 275 (316) Q Consensus 209 gD~Rv~vi~g~---~v~a~~R~~~~~~--~r~Nl~~Gg~~---~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDi 275 (316) .++-|-++++. +.....+++..+. +......++.. .+..++ ++.+++|.++.+.| |+ .++.||+ T Consensus 246 rEitV~v~g~~~~~~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~~~i~~~A~ka~~aL---g~~g~~RiDf 322 (386) T 3e5n_A 246 REIECAVLGNAVPHASVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQAL---GCAGMARVDV 322 (386) T ss_dssp EEEEEEEECSSSCEEEEEEEECC-----------------CEESSCSSCHHHHHHHHHHHHHHHHHH---TCCSEEEEEE T ss_pred EEEEEEECCCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEE T ss_conf 4999975354335434444376057653156764303773102664333899999999999999984---9982699999 Q ss_pred E----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHH Q ss_conf 1----7-878898368830-----37889975199989999 Q gi|254780696|r 276 I----G-DYITEINVTSPT-----CIREIHRNGGENVASLF 306 (316) Q Consensus 276 i----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i 306 (316) + | .|++||| |.|| .+..+-+..|++..+.+ T Consensus 323 ~ld~dG~~y~lEvN-t~PGlt~~S~~p~~a~~~G~s~~~li 362 (386) T 3e5n_A 323 FLCADGRIVINEVN-TLPGFTRISVYPKLWQASGLDYRGLI 362 (386) T ss_dssp EECTTCCEEEEEEE-SSCCCSTTCHHHHHHHTTTCCHHHHH T ss_pred EEECCCCEEEEEEE-CCCCCCCCCHHHHHHHHCCCCHHHHH T ss_conf 99379958999810-97898865689999998099999999 No 12 >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica hm-1} PDB: 1z2o_X* 1z2p_X* Probab=99.69 E-value=1.1e-15 Score=121.69 Aligned_cols=200 Identities=13% Similarity=0.152 Sum_probs=131.9 Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH Q ss_conf 0063668832886224799999999862358504117488752565034334543----044310003724556888852 Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM 156 (316) Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~ 156 (316) ..||+++...-+..-...- .-..++. +..+++++++.+...+.+|..+..+.. ++|++++.++.+++...++.. T Consensus 55 ~~~d~~~~~lh~~~~~~~~-lq~y~~~-~~~~~v~d~~~~~~l~~~k~~~~~~l~~~~IpvP~~~~v~~~e~~~~~~~~~ 132 (324) T 1z2n_X 55 EPNAIITKRTHPVGKMADE-MRKYEKD-HPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSK 132 (324) T ss_dssp CCSEEEECCSCSSSHHHHH-HHHHHHH-CTTSEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTT T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHH-CCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC T ss_conf 8741999906798533339-9999998-8998886859999999969999999997798989979988889999999862 Q ss_pred H---HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC--- Q ss_conf 1---4331116885434468744887115889999984001334002105344568269999899886321220456--- Q gi|254780696|r 157 K---DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE--- 230 (316) Q Consensus 157 ~---~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~--- 230 (316) + |+|+||..|.+|.||+++..-.. ...+ .....+.++|+|+.. ..-.++++++|+++..+++|..+. T Consensus 133 ~l~~P~vvKP~~~~gs~Gvh~~~iv~~-~~~l-----~~~~~~~v~q~f~~~-~~vl~e~yv~G~ei~v~~r~s~~~~~~ 205 (324) T 1z2n_X 133 QLILPFIVKPENAQGTFNAHQMKIVLE-QEGI-----DDIHFPCLCQHYINH-NNKIVKVFCIGNTLKWQTRTSLPNVHR 205 (324) T ss_dssp CSCSSEEEEESBCSSSSGGGEEEEECS-GGGG-----TTCCSSEEEEECCCC-TTCEEEEEEETTEEEEEEECCCCCCCC T ss_pred CCCCCEEEECCCCCCCCCEEEEEEHHH-HHHH-----HHHHHHHHHHHHCCC-CCEEEEEEEECCEEEEEEEECCCCCCC T ss_conf 668973785165788765478743120-6665-----455799999875247-865999997187679999714887420 Q ss_pred ----------------------------------CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf ----------------------------------8600000014731110077899999999999999849879999511 Q gi|254780696|r 231 ----------------------------------VDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI 276 (316) Q Consensus 231 ----------------------------------~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii 276 (316) +.++.+.+........+++++.+++|.++.+.| |+.++|||+| T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~iA~~i~~~L---Gl~l~gvDii 282 (324) T 1z2n_X 206 CGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCAL---GVQLCGIDFI 282 (324) T ss_dssp SSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHH---TCSEEEEEEE T ss_pred CCCCCCCCCCCCCCCEECCCHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---CCCEEEEEEE T ss_conf 2565321235566403247600001246201235543444577854567331499999999999995---9987847999 Q ss_pred -----C-CEEEEEECCCCHHHHHH Q ss_conf -----7-87889836883037889 Q gi|254780696|r 277 -----G-DYITEINVTSPTCIREI 294 (316) Q Consensus 277 -----g-~~i~EvNvtsP~g~~~~ 294 (316) | .||+||| +.| |+.++ T Consensus 283 ~~~~~g~~yViEVN-~~P-G~~g~ 304 (324) T 1z2n_X 283 KENEQGNPLVVDVN-VFP-SYGGK 304 (324) T ss_dssp CGGGCSSCEEEEEE-ESC-CTTSC T ss_pred EECCCCCEEEEEEE-CCC-CCCCC T ss_conf 98599999999967-999-98787 No 13 >3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Probab=99.67 E-value=4.8e-14 Score=111.03 Aligned_cols=282 Identities=13% Similarity=0.137 Sum_probs=157.8 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHH----HHHHHHHHCCCEEEE--EEHHHEEEECCEEEEEEEEEEEECCCCC--EEEE Q ss_conf 9653318997099888484764679----999999988988999--9541248999899999999998077741--2650 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTF----AIALEAQVRGYQIFH--YTPDQLYMRDSKIYANTQPLSLDEKKEQ--YYSL 72 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~----~Lm~eAq~RGheV~~--~~~~dL~~~~g~v~A~~~~i~i~~~~~~--~f~~ 72 (316) |.| +||++++= ...+..|-|+ ...++..+.||+++. ++.+..++. .... ...... .... T Consensus 35 m~k-~~I~vl~G---G~S~E~eiSl~Sg~~v~~aL~~~~y~v~~i~i~~~g~~~~-------~~~~--~~~~~~~~~~~~ 101 (383) T 3k3p_A 35 MSK-ETLVLLYG---GRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIK-------TQEF--DSQPSETDKLMT 101 (383) T ss_dssp --C-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEE-------EEEE--SSCCC--CCCCC T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEE-------CCCC--CCCCCCCCCCCC T ss_conf 579-87999969---3676429999999999997536389799999858987785-------4334--555332110034 Q ss_pred CC-----CC---CCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH-----HC Q ss_conf 46-----44---35210063668832-8862247999999998623585-04117488752565034334543-----04 Q gi|254780696|r 73 GE-----EK---IIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE-----LM 137 (316) Q Consensus 73 ~~-----~~---~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~-----~~ 137 (316) .. .. ..-...+|++|+-- .++- .++ ..-.+||.+ ++ ++-.++.+...|-||..+-++.+ +. T Consensus 102 ~~~~~~~~~~~~~~~~~~~d~vf~~lHG~~G-EdG-~iq~~le~~--gipy~Gs~~~asal~~DK~~tK~il~~~~~i~~ 177 (383) T 3k3p_A 102 NDTIIASQKIKPSDIYEEEAVVFPVLHGPMG-EDG-SIQGFLEVL--KMPYVGTNILSSSVAMDKITTNQVLESATTIPQ 177 (383) T ss_dssp TTSCCGGGEECGGGGCCTTCEEEEECCSTTT-SSS-HHHHHHHHT--TCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCB T ss_pred CCHHHHHCCCCCCCCCCCCCEEEECCCCCCC-CCH-HHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 3112210125731013567889988668665-588-999999984--998404718887767149999999987168887 Q ss_pred CCCEEECCHH----HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEE Q ss_conf 4310003724----5568888521-4331116885434468744887115889999984001334002105344568269 Q gi|254780696|r 138 PPTLISRDIT----QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKR 212 (316) Q Consensus 138 P~T~vt~~~~----~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~R 212 (316) |+..+..+.. .+..+.++.+ |+|+||..|.+|.||.++.. ..++...++.... +...+++|+||+ +.++- T Consensus 178 ~~~~~~~~~~~~~~~~~~i~~~lg~PvivKP~~gGsS~Gv~~V~~-~~el~~a~~~a~~-~~~~vlvEefI~---g~E~t 252 (383) T 3k3p_A 178 VAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISKAEN-RTDLKQAIALALK-YDSRVLIEQGVD---AREIE 252 (383) T ss_dssp CCEEEEETTSCHHHHHHHHHHHCCSSEEEEECC------CEEESS-HHHHHHHHHHHHH-HCSEEEEEECCC---SEEEE T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCC-HHHHHHHHHHHHH-HHHHHHHHCEEC---CCCCE T ss_conf 642123433204678999999738988997888677989722148-9999999998764-437878515651---33217 Q ss_pred EEEECCE---EEEEEEEECCCCCCC--CCCCCCC--CEEEEECCHH----HHHHHHHHHHHHHHCCC-EEEEEEEE---- Q ss_conf 9998998---863212204568600--0000147--3111007789----99999999999998498-79999511---- Q gi|254780696|r 213 ILLLNGK---PVGAVNRIPSEVDNR--SNIHAGG--KAELTKLTKI----DLDICKRIGESLRERGL-FFTGIDVI---- 276 (316) Q Consensus 213 v~vi~g~---~v~a~~R~~~~~~~r--~Nl~~Gg--~~~~~~lt~~----~~~i~~~~~~~L~~~gl-~~~GiDii---- 276 (316) +-|+++. ++.....++..+.|. .....+. ...+..++++ .+++|.++.+.| |+ .++.||++ T Consensus 253 v~v~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~pa~~~~~l~~~i~~~A~ka~~~L---g~~g~~RiDf~ld~d 329 (383) T 3k3p_A 253 VGILGNTDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTL---GCCGLSRCDFFLTED 329 (383) T ss_dssp EEEEESSSCEECCCEEEC-----------------CEESSCCCCHHHHHHHHHHHHHHHHHT---TCCEEEEEEEEECTT T ss_pred EEEEECCCCEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECC T ss_conf 88872477505520010024665330013416874445776657999999999999999984---995279899999389 Q ss_pred C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHHH Q ss_conf 7-878898368830-----3788997519998999999 Q gi|254780696|r 277 G-DYITEINVTSPT-----CIREIHRNGGENVASLFWD 308 (316) Q Consensus 277 g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d 308 (316) | .|++||| |.|| .+...-+..|++.++.+-. T Consensus 330 g~~y~lEvN-t~PGlt~~S~~p~~a~~~G~sy~~Ll~~ 366 (383) T 3k3p_A 330 GKVYLNELN-TMPGFTQWSMYPLLWENMGLSYSVLIEE 366 (383) T ss_dssp CCEEEEEEE-SSCCCC--CHHHHHHHHTTCCHHHHHHH T ss_pred CCEEEEEEE-CCCCCCCCCHHHHHHHHHCCCHHHHHHH T ss_conf 968999861-9899886678999999809999999999 No 14 >1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Probab=99.66 E-value=5.4e-14 Score=110.68 Aligned_cols=274 Identities=13% Similarity=0.137 Sum_probs=164.3 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHH----HHHHHHHHCC-CEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE--- Q ss_conf 9653318997099888484764679----9999999889-8899995412489998999999999980777412650--- Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTF----AIALEAQVRG-YQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL--- 72 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~----~Lm~eAq~RG-heV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~--- 72 (316) |+| +||++++= ...+..|-|+ .+.++..++| |+|+.+.... ...|+.. T Consensus 1 M~K-~kIavl~G---G~S~E~eiSl~Sg~~v~~~L~~~~~y~v~~~~i~~--------------------~g~~~~~~~~ 56 (377) T 1ehi_A 1 MTK-KRVALIFG---GNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQ--------------------NGFFLDTESS 56 (377) T ss_dssp --C-EEEEEEEE---CSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECT--------------------TSCBCCHHHH T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECC--------------------CCCEEECCCH T ss_conf 998-88999969---48864599999999999974565592089999868--------------------9718705631 Q ss_pred ---------------------------CCCCCCCHHHCCEEEEECCCCCCHH-HHHHHHHHHHHCCCC-EEECCHHHHHH Q ss_conf ---------------------------4644352100636688328862247-999999998623585-04117488752 Q gi|254780696|r 73 ---------------------------GEEKIIDLSQMDVILIRQDPPFNMH-YITSTYLLEKINPET-LIVNNPFWIRN 123 (316) Q Consensus 73 ---------------------------~~~~~~~L~~fD~i~iR~dPp~d~~-yi~~~~~Le~~~~~~-~viN~p~~i~~ 123 (316) .-.......++|++|+=--=+.-.+ .+.. +||.+ ++ ++-.+|.+... T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~--~le~~--gIpytGs~~~~~al 132 (377) T 1ehi_A 57 KKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQG--LFKLL--DKPYVGAPLRGHAV 132 (377) T ss_dssp HHHHTTCCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCSTTTSSSHHHH--HHHHT--TCCBSSCCHHHHHH T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH--HHHHC--CCCEECCHHHHHHH T ss_conf 332203443322211012322346044445553046888899888898765729999--99982--99071770998876 Q ss_pred CCCHHHHHHHHH----HCCCCEEECCHH----HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 565034334543----044310003724----5568888521-4331116885434468744887115889999984001 Q gi|254780696|r 124 SPEKIFVTEFSE----LMPPTLISRDIT----QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYP 194 (316) Q Consensus 124 ~~eKl~~~~~~~----~~P~T~vt~~~~----~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~ 194 (316) |.||..+-++.+ ++|+.++....+ .+..+.+..+ |+|+||..|.++.||.+++. ..++...++.. ..+. T Consensus 133 ~~DK~~tk~~l~~~gIptp~~~~~~~~~~~~~~~~~~~~~l~~P~iVKP~~~GsS~GI~~v~~-~~el~~~~~~~-~~~~ 210 (377) T 1ehi_A 133 SFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTN-AEEYTEALSDS-FQYD 210 (377) T ss_dssp HHSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECS-HHHHHHHHHHH-TTTC T ss_pred HCCCHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCEECCC-HHHHHHHHHHH-HHHH T ss_conf 325557777678601245512311511010445899988708968974788877646331478-99999999998-7640 Q ss_pred CCCCEEECCCCCCCCCEEEEEECCE--EEEEE-----EEECCCC---CCCCCCCCCCCE---EEEECCHHH----HHHHH Q ss_conf 3340021053445682699998998--86321-----2204568---600000014731---110077899----99999 Q gi|254780696|r 195 EPLMIQSYLPQIRDGDKRILLLNGK--PVGAV-----NRIPSEV---DNRSNIHAGGKA---ELTKLTKID----LDICK 257 (316) Q Consensus 195 ~~ii~Qefi~~~~~gD~Rv~vi~g~--~v~a~-----~R~~~~~---~~r~Nl~~Gg~~---~~~~lt~~~----~~i~~ 257 (316) ..+++||||+.. .++.|-|++.. ++... ...+... |+.+-...|+.. .+..++++. +++|. T Consensus 211 ~~vlvEefi~G~--rE~tv~v~~~~~~~~~~~~~~~~~~~~~~~~~~dy~~Ky~~~~~~~~~~pa~l~~~~~~~i~~~A~ 288 (377) T 1ehi_A 211 YKVLIEEAVNGA--RELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMAL 288 (377) T ss_dssp SCEEEEECCCCS--CEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHH T ss_pred HHCEEEEEECCC--EEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEECHHCCCCCCCCEECCCCCCCHHHHHHHHHHHH T ss_conf 100045542386--799999845888733563026303325777545210003664441002576544899999999999 Q ss_pred HHHHHHHHCCC-EEEEEEEE----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999998498-79999511----7-878898368830-----378899751999899999999 Q gi|254780696|r 258 RIGESLRERGL-FFTGIDVI----G-DYITEINVTSPT-----CIREIHRNGGENVASLFWDGI 310 (316) Q Consensus 258 ~~~~~L~~~gl-~~~GiDii----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~i 310 (316) ++.+.| |+ .++.||++ | .|++||| |.|| .+...-+..|++..+.+..-| T Consensus 289 ~a~~~L---g~~g~aRiDf~ld~~g~~y~lEvN-t~PGlt~~S~~p~~a~~~G~~~~~li~~ii 348 (377) T 1ehi_A 289 DAYKVL---NLRGEARMDFLLDENNVPYLGEPN-TLPGFTNMSLFKRLWDYSDINNAKLVDMLI 348 (377) T ss_dssp HHHHHT---TCCEEEEEEEEECTTCCEEEEEEE-SSCCCSTTCGGGTGGGGGTCCHHHHHHHHH T ss_pred HHHHHH---CCCCEEEEEEEEECCCCEEEEEEC-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHH T ss_conf 999996---999469999999689978999855-999988403899999980999999999999 No 15 >1e4e_A Vancomycin/teicoplanin A-type resistance protein VANA; ligase, cell WALL, antibiotic resistance, membrane, plasmid; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Probab=99.66 E-value=5.4e-14 Score=110.72 Aligned_cols=297 Identities=15% Similarity=0.141 Sum_probs=166.7 Q ss_pred CCCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEH--HHEEEE-CCE--EE--EEEEEEEEECCCC-CEEE Q ss_conf 9653318997099888-484764679999999988988999954--124899-989--99--9999999807774-1265 Q gi|254780696|r 1 MKKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTP--DQLYMR-DSK--IY--ANTQPLSLDEKKE-QYYS 71 (316) Q Consensus 1 mkk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~--~dL~~~-~g~--v~--A~~~~i~i~~~~~-~~f~ 71 (316) |+| |||++++-=.++ -+.+--|-..+..+..+.||++..+.. ...+.. ... .+ .......+..+.. ...- T Consensus 1 M~k-~ki~vl~GG~S~E~~vSl~Sg~~v~~aL~~~~y~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (343) T 1e4e_A 1 MNR-IKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLL 79 (343) T ss_dssp -CC-EEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEE T ss_pred CCC-CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHHHCCCCCCEEECCCCCCCCHH T ss_conf 998-7899996957842899999999999975162896999988699967855761555422566422335763322012 Q ss_pred ECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCH Q ss_conf 046443521006366883288622479999999986235850-4117488752565034334543----04431000372 Q gi|254780696|r 72 LGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDI 146 (316) Q Consensus 72 ~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~ 146 (316) ........+..+|++|+=..=+.-.++. .-.+||.+ +.. +-.++.+...|.||..+-++.+ ++|++.+.+.. T Consensus 80 ~~~~~~~~~~~~D~vf~~lhG~~GEdg~-iq~~le~~--gipy~Gs~~~~s~l~~DK~~~k~il~~~gI~tp~~~~~~~~ 156 (343) T 1e4e_A 80 VKKNHEYEINHVDVAFSALHGKSGEDGS-IQGLFELS--GIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKD 156 (343) T ss_dssp EEETTEEEEEECSEEEECCCSTTTTSSH-HHHHHHHH--TCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTT T ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCHH-HHHHHHHC--CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHCCCCH T ss_conf 2023101345677899887787754609-99999986--99861685799998647066688999809998702001214 Q ss_pred HHHHHHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCE---EEE Q ss_conf 4556888852-143311168854344687448871158899999840013340021053445682699998998---863 Q gi|254780696|r 147 TQITRFYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGK---PVG 222 (316) Q Consensus 147 ~~~~~f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~---~v~ 222 (316) +... .+.. .|+|+||..+.++.||.+++. ..++...++... ++...+++|+||+ +.++.|-|++++ .+. T Consensus 157 ~~~~--~~~~~~P~vVKP~~~gsS~Gv~~v~~-~~el~~~~~~~~-~~~~~vlvEefI~---G~E~~v~vl~~~~~~~~~ 229 (343) T 1e4e_A 157 DRPV--AATFTYPVFVKPARSGSSFGVKKVNS-ADELDYAIESAR-QYDSKILIEQAVS---GCEVGCAVLGNSAALVVG 229 (343) T ss_dssp CCCC--GGGSCSCEEEEESSCCTTTTCEEECS-GGGHHHHHHHHT-TTCSSEEEEECCC---SEEEEEEEEEETTCCEEC T ss_pred HHHH--HHHCCCCEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHH-HHHHHHHHHHCCC---CEEEEEEEECCCCCEEEE T ss_conf 2888--87538985788667777778652465-788899999998-6324667874468---749999996588840676 Q ss_pred EE-EEECCCCCCCCC--C--CCC--CC--EEEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----C-CEEEEE Q ss_conf 21-220456860000--0--014--73--1110077899----9999999999998498-79999511----7-878898 Q gi|254780696|r 223 AV-NRIPSEVDNRSN--I--HAG--GK--AELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI----G-DYITEI 283 (316) Q Consensus 223 a~-~R~~~~~~~r~N--l--~~G--g~--~~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii----g-~~i~Ev 283 (316) .+ ...+..+.+... . ..+ .+ ..+..++++. +++|.++.+.| |+ .++.||++ | .|++|| T Consensus 230 ~i~ei~~~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~~~~~~i~~~A~k~~~~l---g~~g~~RvDf~~d~~g~~yvlEv 306 (343) T 1e4e_A 230 EVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTL---GCRGLARVDMFLQDNGRIVLNEV 306 (343) T ss_dssp CCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCSSCHHHHHHHHHHHHHHHHHT---TCEEEEEEEEEECTTCCEEEEEE T ss_pred ECCCCCCCCCCCEEHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCEEEEEE T ss_conf 113313456642001110233577761111443234899999999999999983---99507998999948992999985 Q ss_pred ECCCCH-----HHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 368830-----37889975199989999999988 Q gi|254780696|r 284 NVTSPT-----CIREIHRNGGENVASLFWDGIEK 312 (316) Q Consensus 284 NvtsP~-----g~~~~~~~~~~~i~~~i~d~ie~ 312 (316) | |.|| .+..+-++.|++..+.+-.-|+. T Consensus 307 N-t~PGlt~~S~~p~~a~~~G~~~~~li~~ii~~ 339 (343) T 1e4e_A 307 N-TLPGFTSYSRYPRMMAAAGISLPELIDRLIVL 339 (343) T ss_dssp E-SSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHH T ss_pred E-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 1-98998876789999998199999999999999 No 16 >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Probab=99.66 E-value=1.4e-15 Score=121.18 Aligned_cols=191 Identities=23% Similarity=0.238 Sum_probs=122.6 Q ss_pred CHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH---HCCCCEEECCHHHHHHHHH Q ss_conf 21006366883288622479999999986235850-4117488752565034334543---0443100037245568888 Q gi|254780696|r 79 DLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE---LMPPTLISRDITQITRFYL 154 (316) Q Consensus 79 ~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~---~~P~T~vt~~~~~~~~f~~ 154 (316) .+.+.|++|+ ..|-.|.-....+.++| .++. +.++|.+++.|.||+.+.++.+ .+|+|.... T Consensus 66 ~~~~~d~~l~-IapE~d~~l~~~~~~~e---~~~~~lg~~~~ai~i~~DK~~t~~~L~~~~~~p~~~~~~---------- 131 (305) T 3df7_A 66 YLEKSDAFLI-IAPEDDFLLYTLTKKAE---KYCENLGSSSRAIAVTSDKWELYKKLRGEVQVPQTSLRP---------- 131 (305) T ss_dssp HHTTCSEEEE-ECCCGGGHHHHHHHHHH---TTSEESSCCHHHHHHHTSHHHHHHHHTTTSCCCCEESSC---------- T ss_pred HHHHCCEEEE-ECCCCHHHHHHHHHHHH---CCCCEECCCHHHHHHHHCHHHHHHHHHCCCCCCCCCHHH---------- T ss_conf 9987794399-87880366899999998---199398888999998879999999996579999713100---------- Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEEEEEEEECCCC Q ss_conf 5214331116885434468744887115889999984001334002105344568269999899---8863212204568 Q gi|254780696|r 155 EMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPVGAVNRIPSEV 231 (316) Q Consensus 155 ~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v~a~~R~~~~~ 231 (316) ...|+|+||.+|+||+||+.+...+ +.+++||||+.. ...+.++.| .+++...|... T Consensus 132 ~~~p~VvKP~~G~gg~gv~~~~~~~---------------~~~ivQeyi~G~---e~sv~~~~~~~~~~l~~~~~~~~-- 191 (305) T 3df7_A 132 LDCKFIIKPRTACAGEGIGFSDEVP---------------DGHIAQEFIEGI---NLSVSLAVGEDVKCLSVNEQIIN-- 191 (305) T ss_dssp CSSSEEEEESSCC----CBCCSSCC---------------TTEEEEECCCSE---EEEEEEEESSSEEEEEEEEEEEE-- T ss_pred CCCCEEEEECCCCCCCCEEEECCCC---------------CCCEEEEEECCC---EEEEEEEECCCEEEEEEEEEEEC-- T ss_conf 5985899718999986539860676---------------001001464772---06999990893699999877320-- Q ss_pred CCCCCCCCCCCEEEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE---CCEEEEEECCCCH-HHHHHHHHCCCCH Q ss_conf 600000014731110077----8999999999999998498-79999511---7878898368830-3788997519998 Q gi|254780696|r 232 DNRSNIHAGGKAELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI---GDYITEINVTSPT-CIREIHRNGGENV 302 (316) Q Consensus 232 ~~r~Nl~~Gg~~~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii---g~~i~EvNvtsP~-g~~~~~~~~~~~i 302 (316) .++.+ |+ ..+..++ ++..++|.++++.|. |+ -++|||++ +.||+|||- -|| .+.++.+++|.|+ T Consensus 192 ~~~~~---g~-~~~~~~~~~~~~~i~~~a~k~~~~l~--~~~G~~~vD~i~~~~~~viEINP-R~t~s~~~l~~~~g~n~ 264 (305) T 3df7_A 192 NFRYA---GA-VVPARISDEVKREVVEEAVRAVECVE--GLNGYVGVDIVYSDQPYVIEINA-RLTTPVVAFSRAYGASV 264 (305) T ss_dssp TTEEE---EE-EESCCCCHHHHHHHHHHHHHHHTTST--TCCEEEEEEEEESSSEEEEEEES-SCCGGGGGHHHHHSCCH T ss_pred CEEEC---CC-CCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHHHHCCCH T ss_conf 13355---75-10124556779999999999999826--98751799984589809999838-98855888999979799 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780696|r 303 ASLFWDGI 310 (316) Q Consensus 303 ~~~i~d~i 310 (316) ++.+++.. T Consensus 265 ~~l~~~~~ 272 (305) T 3df7_A 265 ADLLAGGE 272 (305) T ss_dssp HHHHTTCC T ss_pred HHHHHHHH T ss_conf 99999988 No 17 >3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, ATP-binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} Probab=99.65 E-value=2.5e-13 Score=106.28 Aligned_cols=285 Identities=11% Similarity=0.143 Sum_probs=165.4 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCH----HHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCC--------- Q ss_conf 965331899709988848476467----9999999988988999954124899989999999999807774--------- Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDST----FAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKE--------- 67 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT----~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~--------- 67 (316) |.| |||++++= ......+-| ..+.++..+.||++..+... .+|.-+. .-......... T Consensus 1 m~k-~ki~vl~G---G~S~E~evSl~Sg~~v~~~L~~~~~~v~~i~i~----~~g~w~~-~~~~~~~~~~~~~~~~~~~~ 71 (364) T 3i12_A 1 MAK-LRVGIVFG---GKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID----KAGQWHV-NDAENYLQNADDPAHIALRP 71 (364) T ss_dssp -CC-EEEEEEEE---CSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEEC----TTSCEEE-ECSSSSBSSTTCTTTCCBCC T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHCHHCCEEEEEEEC----CCCCEEE-CCHHHHHHCCCCHHHHHCCC T ss_conf 998-78999969---468738999999999999756547979999985----8998873-55576543157603320375 Q ss_pred ---CEEE---------ECCCCCCCHHHCCEEEEECCCCCCHHH-HHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHH Q ss_conf ---1265---------046443521006366883288622479-99999998623585-041174887525650343345 Q gi|254780696|r 68 ---QYYS---------LGEEKIIDLSQMDVILIRQDPPFNMHY-ITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEF 133 (316) Q Consensus 68 ---~~f~---------~~~~~~~~L~~fD~i~iR~dPp~d~~y-i~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~ 133 (316) ..-. ........+..+|++|+=---+...++ +- .+||.+ +. ++-.+|.+...|-||..+-++ T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~~hG~~gEdg~iq--~~Le~~--~ipytGs~~~as~l~~DK~~~k~~ 147 (364) T 3i12_A 72 SAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQ--GMLRVA--NLPFVGSDVLSSAACMDKDVAKRL 147 (364) T ss_dssp CSCBEEECTTCSSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHH--HHHHHT--TCCBSSCCHHHHHHHHCHHHHHHH T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCCCCCCHHHHHHCCCHHHHHHH T ss_conf 4210001554322110002244544314689984678887685999--999975--998628898999760990377999 Q ss_pred HH----HCCCCEEECCHHH----HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCC Q ss_conf 43----0443100037245----568888521-43311168854344687448871158899999840013340021053 Q gi|254780696|r 134 SE----LMPPTLISRDITQ----ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLP 204 (316) Q Consensus 134 ~~----~~P~T~vt~~~~~----~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~ 204 (316) .. ++|+..+....+. ...+....+ |+|+||..|.++.||.+++. ..++...++.... +...+++|+||+ T Consensus 148 l~~~gI~tp~~~~~~~~~~~~~~~~~~~~~~~~P~ivKP~~~GsS~Gv~~v~~-~~el~~~~~~~~~-~~~~vlvEefI~ 225 (364) T 3i12_A 148 LRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVAN-EAQYQQAVALAFE-FDHKVVVEQGIK 225 (364) T ss_dssp HHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESS-HHHHHHHHHHHHH-HCSEEEEEECCC T ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCEEECC-HHHHHHHHHHHHH-HHHHCCHHCEEE T ss_conf 99859986326874033113455788777617977887766788887524221-7779999999887-401001103572 Q ss_pred CCCCCCEEEEEECC---EEEEEEEEECCCCCCCCCC--CCCC---CEEEEECCHHH----HHHHHHHHHHHHHCCC-EEE Q ss_conf 44568269999899---8863212204568600000--0147---31110077899----9999999999998498-799 Q gi|254780696|r 205 QIRDGDKRILLLNG---KPVGAVNRIPSEVDNRSNI--HAGG---KAELTKLTKID----LDICKRIGESLRERGL-FFT 271 (316) Q Consensus 205 ~~~~gD~Rv~vi~g---~~v~a~~R~~~~~~~r~Nl--~~Gg---~~~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~ 271 (316) +.++.|-++++ .++....+.+..+.+-.+. ..+. ...+..++++. +++|.++.+.| |+ .++ T Consensus 226 ---G~E~tV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~e~~~~i~~~A~~a~~~L---g~~g~~ 299 (364) T 3i12_A 226 ---GREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTL---GCAGMA 299 (364) T ss_dssp ---SEEEEEEEEESSSCEEEEEEEEECCTTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHT---TCCEEE T ss_pred ---EEEEEEEECCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCEE T ss_conf ---27999851454465353114532466654400110366653345661004999999999999999971---998469 Q ss_pred EEEEE----C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHH Q ss_conf 99511----7-878898368830-----378899751999899999 Q gi|254780696|r 272 GIDVI----G-DYITEINVTSPT-----CIREIHRNGGENVASLFW 307 (316) Q Consensus 272 GiDii----g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~ 307 (316) .||++ | .|++||| |.|| .+...-+..|++..+.+- T Consensus 300 RvDf~~d~~g~~yvlEvN-t~PGlt~~S~~p~~~~~~G~s~~~li~ 344 (364) T 3i12_A 300 RVDVFLTADNEVVINEIN-TLPGFTNISMYPKLWQASGLGYTDLIS 344 (364) T ss_dssp EEEEEECTTCCEEEEEEE-SSCCCSTTCHHHHHHHTTTCCHHHHHH T ss_pred EEEEEEECCCCEEEEEEE-CCCCCCCCCHHHHHHHHHCCCHHHHHH T ss_conf 888999189968999865-899988666799999981989999999 No 18 >2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} Probab=99.60 E-value=6.9e-15 Score=116.57 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=149.1 Q ss_pred HHHHHHHH--CCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH Q ss_conf 99999998--8988999954124899989999999999807774126504644352100636688328862247999999 Q gi|254780696|r 26 AIALEAQV--RGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY 103 (316) Q Consensus 26 ~Lm~eAq~--RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~ 103 (316) .|+++.++ ++++|+.++.+....... ++....+--..+...|.+.- .+...-.+.|.|+... |.+-..... T Consensus 17 ~l~~~~~~~~~~~~vi~~D~~~~~~~~~--~~D~~~~~p~~~~~~~~~~l-~~i~~~~~id~iip~~----d~~~~~~a~ 89 (331) T 2pn1_A 17 KLVEYFVKEFKTGRVSTADCSPLASALY--MADQHYIVPKIDEVEYIDHL-LTLCQDEGVTALLTLI----DPELGLLAQ 89 (331) T ss_dssp HHHHHHHHHCCSSEEEEEESCTTCGGGG--GSSSEEECCCTTSTTHHHHH-HHHHHHHTCCEEEESS----HHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHH--HCCEEEECCCCCCHHHHHHH-HHHHHHHCCCEEEECC----CHHHHHHHH T ss_conf 9999999749999899988999985788--45988987998856799999-9999995999999788----657999999 Q ss_pred HHHHHC-CCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEEC Q ss_conf 998623-5850-4117488752565034334543----0443100037245568888521-4331116885434468744 Q gi|254780696|r 104 LLEKIN-PETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRIT 176 (316) Q Consensus 104 ~Le~~~-~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~ 176 (316) ..+.++ .++. +.|++.+++.+.||..+.++.. ++|+|+...+..+......+.+ |+|+||..|+||+||+++. T Consensus 90 ~~~~l~~~g~~v~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~~e~~~~~~~~~~P~vvKP~~g~gs~gv~~i~ 169 (331) T 2pn1_A 90 ATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVE 169 (331) T ss_dssp THHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSHHHHHHHHHTTSSCSCEEEEESBC---------- T ss_pred HHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC T ss_conf 99999978998987989999987499999999998699832221334658899988753897799868889888759974 Q ss_pred CCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEE--ECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 887115889999984001334002105344568269999--899886321220456860000001473111007789999 Q gi|254780696|r 177 LGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL--LNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLD 254 (316) Q Consensus 177 ~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~v--i~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~ 254 (316) .. .++...++ . ..++++||||+.... .+-+++ .+|+++....|.. ..++...+ ........++..+ T Consensus 170 ~~-~el~~~~~----~-~~~~iiqe~i~G~e~-~v~~~~~~~~g~~~~~~~~~~--~~~~~g~~---~~~~~~~~~~i~~ 237 (331) T 2pn1_A 170 TV-EEVEQLFS----K-NTDLIVQELLVGQEL-GVDAYVDLISGKVTSIFIKEK--LTMRAGET---DKSRSVLRDDVFE 237 (331) T ss_dssp -------------------CEEEEECCCSEEE-EEEEEECTTTCCEEEEEEEEE--EEEETTEE---EEEEEECCHHHHH T ss_pred CH-HHHHHHHH----H-CCCHHHHHHHCCCEE-EEEEEEECCCCCEEEEEEEEE--CCCCCCCC---CCCCHHHHHHHHH T ss_conf 79-99999987----2-612212454067332-799999857991654301451--13346787---6653011199999 Q ss_pred HHHHHHHHHHHCCCE-EEEEEEE----CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 999999999984987-9999511----7878898368830378899751999899999999 Q gi|254780696|r 255 ICKRIGESLRERGLF-FTGIDVI----GDYITEINVTSPTCIREIHRNGGENVASLFWDGI 310 (316) Q Consensus 255 i~~~~~~~L~~~gl~-~~GiDii----g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~i 310 (316) ++.++++.| |+. .+++|++ +.|++|||. =++|--.+...+|.|....+++.+ T Consensus 238 ~~~~i~~~l---~~~G~~~vd~~~~~~~~~viEiNp-R~~g~~~~~~~~G~n~~~~~~~~~ 294 (331) T 2pn1_A 238 LVEHVLDGS---GLVGPLDFDLFDVAGTLYLSEINP-RFGGGYPHAYECGVNFPAQLYRNL 294 (331) T ss_dssp HHHHHHTTT---CCCEEEEEEEEEETTEEEEEEEES-SCCTTHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHC---CCCCEEEEEEEEECCCEEEEEECC-CCCCCHHHHHHHCCCHHHHHHHHH T ss_conf 999999982---972179999999899499999935-899843889984989999999997 No 19 >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} Probab=99.50 E-value=4.8e-11 Score=91.36 Aligned_cols=284 Identities=12% Similarity=0.114 Sum_probs=155.7 Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHEEEE---CCEEEEEEEEEEEECCC-CCEEEECCC Q ss_conf 6533189970998884847646799999999889889999--54124899---98999999999980777-412650464 Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQLYMR---DSKIYANTQPLSLDEKK-EQYYSLGEE 75 (316) Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL~~~---~g~v~A~~~~i~i~~~~-~~~f~~~~~ 75 (316) .+|+||++. + ..---++++++|++.|+++... +++..+.. -.+. +.+.... ..-| +.-. T Consensus 4 ~~~kkiLia-n-------rGeiA~riiraarelG~~tV~V~s~~D~~a~~~~~ADe~------~~i~~~~~~~sY-ld~e 68 (446) T 3ouz_A 4 MEIKSILIA-N-------RGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADAS------ICIGKARSSESY-LNIP 68 (446) T ss_dssp TCCCEEEEC-C-------CHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEE------EEEECCTTTTGG-GCHH T ss_pred CCCCEEEEE-C-------CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCEE------EECCCCCCCCCC-CCHH T ss_conf 545389998-9-------869999999999986991999927564457667669999------985998732013-4999 Q ss_pred CC---CCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCC--EEECC Q ss_conf 43---52100636688328862247999999998623585-04117488752565034334543----04431--00037 Q gi|254780696|r 76 KI---IDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPT--LISRD 145 (316) Q Consensus 76 ~~---~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T--~vt~~ 145 (316) .. ..-...|+|++=-. |-.+-......++. .+. ++-.+|.+++.+.||..+-++.+ ++|+. ...++ T Consensus 69 ~i~~ia~~~~~daI~pg~g--~lse~~~~a~~~~~--~gi~~iGps~~~i~~~~dK~~~k~~~~~~Gvpv~~~~~~~~~~ 144 (446) T 3ouz_A 69 AIIAAAEIAEADAIFPGYG--FLSENQNFVEICAK--HNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAG 144 (446) T ss_dssp HHHHHHHHHTCSEEECCSS--TTTTCHHHHHHHHH--TTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCS T ss_pred HHHHHHHHHCCCEEECCCC--HHHHCHHHHHHHHH--CCCEECCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 9999999979499986712--33247799999998--5996528989999975394989999998699660476756799 Q ss_pred HHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEE-C- Q ss_conf 245568888521-43311168854344687448871158899999-----840013340021053445682699998-9- Q gi|254780696|r 146 ITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLL-N- 217 (316) Q Consensus 146 ~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi-~- 217 (316) .+++.++.++.| |+|+||.+|.||+|+.++. +..++...++.. ...+..++++++||+..+ .+-|-++ | T Consensus 145 ~ee~~~~a~~iGyPviVKps~ggGGrG~~iV~-~~~el~~~~~~a~~ea~~~~~~~~vlvEk~l~g~r--eiEVqvl~D~ 221 (446) T 3ouz_A 145 AEAAKKLAKEIGYPVILKAAAGGGGRGMRVVE-NEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPR--HIEVQVIGDS 221 (446) T ss_dssp HHHHHHHHHHHCSSEEEEETTCCTTCSEEEEC-SGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCE--EEEEEEEECT T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EEEEEEEECC T ss_conf 99999999974998999978889988158975-81676999999999999738998789998259988--9999999769 Q ss_pred -CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEE-EEEEE----C-CEEEEEECCCCH Q ss_conf -988632122045686000000147311100778999-999999999998498799-99511----7-878898368830 Q gi|254780696|r 218 -GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFT-GIDVI----G-DYITEINVTSPT 289 (316) Q Consensus 218 -g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~-GiDii----g-~~i~EvNvtsP~ 289 (316) |.+++...|.-+-. +.+--....+-...|+++.+ ++...+.+..++.|+.-+ .++++ | .|++|||.=... T Consensus 222 ~g~~i~~~~r~~s~~--~~~~~~ie~~P~~~l~~~~~~~l~~~a~~~~~alg~~g~~~vef~v~~~g~~y~iEvNpR~~~ 299 (446) T 3ouz_A 222 FGNVIHVGERDCSMQ--RRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKNLDFYFIEMNTRLQV 299 (446) T ss_dssp TSCEEEEEEEEEEEE--ETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCT T ss_pred CCCEEEEEEECCCCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCC T ss_conf 999999854506667--777747999389879999999999999999997098576379998237885689983156678 Q ss_pred HHHHHHHHCCCCHHHHHHHH Q ss_conf 37889975199989999999 Q gi|254780696|r 290 CIREIHRNGGENVASLFWDG 309 (316) Q Consensus 290 g~~~~~~~~~~~i~~~i~d~ 309 (316) -..-.+.++|+|+.+.-+.. T Consensus 300 ~~~~te~~tGvdlv~~~i~i 319 (446) T 3ouz_A 300 EHCVSEMVSGIDIIEQMIKV 319 (446) T ss_dssp THHHHHHHHCCCHHHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHH T ss_conf 73158888688689999998 No 20 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* Probab=99.49 E-value=1.4e-12 Score=101.51 Aligned_cols=273 Identities=14% Similarity=0.132 Sum_probs=156.6 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEEC--C-CCCCCH Q ss_conf 3318997099888484764679999999988988999954124899989999999999807774126504--6-443521 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLG--E-EKIIDL 80 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~--~-~~~~~L 80 (316) .|||+++..- . --..|++||++.|+++.+++++.=+-. .-.| ..++... + .....+ T Consensus 19 ~~kIlIlG~G--q------lgr~la~aA~~lG~~v~v~d~~~~~pa--~~~a-----------d~~~~~~~~D~e~l~~~ 77 (433) T 2dwc_A 19 AQKILLLGSG--E------LGKEIAIEAQRLGVEVVAVDRYANAPA--MQVA-----------HRSYVGNMMDKDFLWSV 77 (433) T ss_dssp CCEEEEESCS--H------HHHHHHHHHHHTTCEEEEEESSTTCHH--HHHS-----------SEEEESCTTCHHHHHHH T ss_pred CCEEEEECCC--H------HHHHHHHHHHHCCCEEEEEECCCCCCH--HHHC-----------CEEEECCCCCHHHHHHH T ss_conf 9899999988--9------999999999986998999979798867--7735-----------55897799999999999 Q ss_pred ---HHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHH-HHHH-H---HCCCCEEECCHHHHHH Q ss_conf ---0063668832-8862247999999998623585041174887525650343-3454-3---0443100037245568 Q gi|254780696|r 81 ---SQMDVILIRQ-DPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFV-TEFS-E---LMPPTLISRDITQITR 151 (316) Q Consensus 81 ---~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~-~~~~-~---~~P~T~vt~~~~~~~~ 151 (316) .+.|+|..=- ++|.+ . +.+..+.++.+..+|.+...+.+|... -.|. + ++|+....++.+++.+ T Consensus 78 a~~~~~d~v~~~~e~~~~~-----~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gIpt~~~~~v~s~~e~~~ 150 (433) T 2dwc_A 78 VEREKPDAIIPEIEAINLD-----A--LFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELYE 150 (433) T ss_dssp HHHHCCSEEEECSSCSCHH-----H--HHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHH T ss_pred HHHHCCCEEEECCCCCCHH-----H--HHHHHCCCCEECCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH T ss_conf 9982999999797866689-----9--99874268765189699998730099999999866999578521289999999 Q ss_pred HHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---CCCCCCEEECCCCCCCC---CEEEEEECCEEEEEE Q ss_conf 888521-43311168854344687448871158899999840---01334002105344568---269999899886321 Q gi|254780696|r 152 FYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK---YPEPLMIQSYLPQIRDG---DKRILLLNGKPVGAV 224 (316) Q Consensus 152 f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~---~~~~ii~Qefi~~~~~g---D~Rv~vi~g~~v~a~ 224 (316) +.++.| |+|+||.+|++|+|++.+. +..++...++.+... ....+++++|++..... ..|-...+|++.... T Consensus 151 ~~~~ig~PvVvKp~~~~gg~Gv~~v~-~~~el~~a~~~a~~~~~~~~~~v~~e~~i~~~~e~~~~~~~~~~~~g~~~~~~ 229 (433) T 2dwc_A 151 ACEKIGYPCHTKAIMSSSGKGSYFVK-GPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDVEVTELAVRHFDENGEIVTTF 229 (433) T ss_dssp HHHHHCSSEEEEECCC------EEEC-SGGGHHHHHHC---------CCEEEEECCCCSEEEEECCEEEECTTSCEEEEE T ss_pred HHHHHCCCEEEEEEEECCCCCCEEEC-CHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEECCCCEEEEEEE T ss_conf 99983884032113523698637977-98999999999997512466764310011456413799999469975899984 Q ss_pred EEECCCCCCCCCCCCCCCEEEEECCHHHHH----HHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHH--HHHH Q ss_conf 220456860000001473111007789999----9999999999849879999511----78788983688303--7889 Q gi|254780696|r 225 NRIPSEVDNRSNIHAGGKAELTKLTKIDLD----ICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTC--IREI 294 (316) Q Consensus 225 ~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~----i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g--~~~~ 294 (316) .. ..+.+..+--..+...+..++++.++ ++.+++..|.-.|. ..++++ +.|++|||. -|+| +..+ T Consensus 230 ~~--~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~--~~ve~~~~~~~~~viEinp-R~~~~~~~~l 304 (433) T 2dwc_A 230 PK--PVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDVLGGLGI--FGVEMFVKGDKVWANEVSP-RPHDTGMVTL 304 (433) T ss_dssp EC--CEEEEESSSSEEEEEESCCCCHHHHHHHHHHHHHHHHHHCSSEE--CEEEEEEETTEEEEEEEES-SCCGGGGGHH T ss_pred CC--CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEE--EEEEEEECCCCEEEEEEEE-CCCCCCEEEH T ss_conf 33--23434313540155179303289999999999999997699726--4788775499268999983-4678750018 Q ss_pred -HHHCCCCHHHHHHHHH Q ss_conf -9751999899999999 Q gi|254780696|r 295 -HRNGGENVASLFWDGI 310 (316) Q Consensus 295 -~~~~~~~i~~~i~d~i 310 (316) ...+|+|.....+... T Consensus 305 ~~~~tgi~~~e~~ir~~ 321 (433) T 2dwc_A 305 ASHPPGFSEFALHLRAV 321 (433) T ss_dssp HHSCTTCSHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHH T ss_conf 76550851999999986 No 21 >2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Probab=99.45 E-value=8.6e-12 Score=96.26 Aligned_cols=219 Identities=15% Similarity=0.182 Sum_probs=139.5 Q ss_pred CCHHHCCEEEEECCCCCCH-HHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHH Q ss_conf 5210063668832886224-79999999986235850-4117488752565034334543----0443100037245568 Q gi|254780696|r 78 IDLSQMDVILIRQDPPFNM-HYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITR 151 (316) Q Consensus 78 ~~L~~fD~i~iR~dPp~d~-~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~ 151 (316) +....+|+||+=..=.+-. ..+. .+||.+ ++. +-.++.+...|.||..+-++.+ ++|+..+..+.+.. T Consensus 72 ~~~~~~D~vf~~~hG~~gEdg~~q--~~le~~--gipy~Gs~~~~~~l~~DK~~~k~~l~~~gIptp~~~~~~~~~~~-- 145 (322) T 2fb9_A 72 LSWERYDVVFPLLHGRFGEDGTVQ--GFLELL--GKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPP-- 145 (322) T ss_dssp CCCTTCSEEEEECCSTTTTSSHHH--HHHHHH--TCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTSCC-- T ss_pred HHHCCCCEEEECCCCCCCCCHHHH--HHHHHC--CCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHH-- T ss_conf 763389899999878754488999--999983--99851488778877439999999999839985334332220235-- Q ss_pred HHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEEEEEEEE Q ss_conf 88852-14331116885434468744887115889999984001334002105344568269999899---886321220 Q gi|254780696|r 152 FYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPVGAVNRI 227 (316) Q Consensus 152 f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v~a~~R~ 227 (316) ..+. .|+|+||.+|.++.||.++. +.+++...++... .+...+++++|+. ...++.|-++++ ++....... T Consensus 146 -~~~~~~P~ivKP~~~gsS~Gv~~v~-~~~el~~a~~~~~-~~~~~~~~e~~i~--~g~E~~v~v~~~~~~~~~~~~~~~ 220 (322) T 2fb9_A 146 -VVPFDPPFFVKPANTGSSVGISRVE-RFQDLEAALALAF-RYDEKAVVEKALS--PVRELEVGVLGNVFGEASPVGEVR 220 (322) T ss_dssp -CCCSCSCEEEEETTCCTTTTCEEES-SHHHHHHHHHHHT-TTCSEEEEEECCS--SCEEEEEEEESSSSCEEEEEEEEE T ss_pred -HHCCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHH-CCCCCCCCHHEEE--CCEEEEEEEEECCCCCEEEEEEEC T ss_conf -5325886899726888776866836-8999999987530-0222334200131--230899999723446220135531 Q ss_pred CCCC--CCCCCCCCCCCE--EEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE----CCEEEEEECCCCH----- Q ss_conf 4568--600000014731--110077----8999999999999998498-79999511----7878898368830----- Q gi|254780696|r 228 PSEV--DNRSNIHAGGKA--ELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI----GDYITEINVTSPT----- 289 (316) Q Consensus 228 ~~~~--~~r~Nl~~Gg~~--~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii----g~~i~EvNvtsP~----- 289 (316) +..+ ++.+....+... .+..++ ++.+++|.++.+.| |+ .++.||++ ..|++||| |.|| T Consensus 221 ~~~~~~~~~~k~~~~~~~~~~p~~~~~~~~~~i~~~a~k~~~~L---g~~g~~rvDf~~~~g~~yvlEvN-t~PGlt~~s 296 (322) T 2fb9_A 221 YEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVL---GVRGMARVDFFLAEGELYLNELN-TIPGFTPTS 296 (322) T ss_dssp EECCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHHHHHHHH---TCCSEEEEEEEEETTEEEEEEEE-SSCCCSSSC T ss_pred CCCCCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEEEECCEEEEEEEE-CCCCCCCCC T ss_conf 34576424116823763114687414667568999999999981---99617999999999989999866-989988577 Q ss_pred HHHHHHHHCCCCHHHHHHHHHH Q ss_conf 3788997519998999999998 Q gi|254780696|r 290 CIREIHRNGGENVASLFWDGIE 311 (316) Q Consensus 290 g~~~~~~~~~~~i~~~i~d~ie 311 (316) .+..+-++.|++.++.+-.-++ T Consensus 297 ~~p~~a~~~G~~~~~li~~ii~ 318 (322) T 2fb9_A 297 MYPRLFEAGGVAYPELLRRLVE 318 (322) T ss_dssp HHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHH T ss_conf 8999999809999999999999 No 22 >3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Probab=99.44 E-value=7.2e-12 Score=96.75 Aligned_cols=249 Identities=10% Similarity=0.065 Sum_probs=142.7 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC Q ss_conf 33189970998884847646799999999889889999541248999899999999998077741265046443521006 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM 83 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f 83 (316) ||||+++..- .-...|+++|++.|+++..++++.=. ....+. - T Consensus 1 MKkv~IlG~G--------QLgrm~a~aA~~lG~~v~~~~~d~~~------------------~a~~~~-----------~ 43 (355) T 3eth_A 1 MKQVCVLGNG--------QLGRMLRQAGEPLGIAVWPVGLDAEP------------------AAVPFQ-----------Q 43 (355) T ss_dssp CCEEEEESCS--------HHHHHHHHHHGGGTCEEEEECTTCCG------------------GGCCCT-----------T T ss_pred CCEEEEECCC--------HHHHHHHHHHHHCCCEEEEEECCCCC------------------CCHHHC-----------C T ss_conf 9999998798--------99999999999789989998179996------------------533225-----------7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-H Q ss_conf 3668832886224799999999862358504117488752565034334543----0443100037245568888521-4 Q gi|254780696|r 84 DVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-D 158 (316) Q Consensus 84 D~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~ 158 (316) |++..=. -.++..- |+.+.....+.-+|.+++.+.||+..-+|.+ ++|+....++.+++.++.++.| | T Consensus 44 dvvt~e~-E~i~~~a------l~~~~~~~~~~p~~~a~~i~~dK~~~K~~l~~~gIpt~~~~~v~s~~el~~~~~~iG~P 116 (355) T 3eth_A 44 SVITAEI-ERWPETA------LTRQLARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGEL 116 (355) T ss_dssp SEEEESC-SCCCCCH------HHHHHHTCTTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCSE T ss_pred CEEEECC-CCCCHHH------HHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCC T ss_conf 7999271-8998999------99996149988998799987463999999997698988733236899999988753982 Q ss_pred HHHHCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC-CEEEEEEEEECCCCCCCCC Q ss_conf 3311168-8543446874488711588999998400133400210534456826999989-9886321220456860000 Q gi|254780696|r 159 IIIKPLY-GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN-GKPVGAVNRIPSEVDNRSN 236 (316) Q Consensus 159 vViKPl~-g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~-g~~v~a~~R~~~~~~~r~N 236 (316) +|+||.. |++|+|++.++..+. ... ......++++++|++ .+..+-+.++. +....... |.......| T Consensus 117 ~VlKp~~~g~~g~g~~vv~~~e~-~~~-----~~~~~~~~ivEe~i~--~~~E~sv~~~r~~~~~~~~~--~~~~~~~~~ 186 (355) T 3eth_A 117 AIVKRRTGGYDGRGQWRLRANET-EQL-----PAECYGECIVEQGIN--FSGEVSLVGARGFDGSTVFY--PLTHNLHQD 186 (355) T ss_dssp EEEEESSSCCTTTTEEEEETTCG-GGS-----CGGGTTTEEEEECCC--CSEEEEEEEEECTTSCEEEC--CCEEEEEET T ss_pred EEEEECCCCCCCCCCEECCCHHH-HHH-----HHHCCCCEEEEECCC--CCEEEEEEEEECCCCEEEEE--CCEEEECCC T ss_conf 69998134546763154595889-999-----886478615652157--63788763133388509970--340200124 Q ss_pred CCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCC--HHHHHHHHHCCCCHHHHH Q ss_conf 00147311100778999----99999999999849879999511----787889836883--037889975199989999 Q gi|254780696|r 237 IHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFTGIDVI----GDYITEINVTSP--TCIREIHRNGGENVASLF 306 (316) Q Consensus 237 l~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP--~g~~~~~~~~~~~i~~~i 306 (316) -..-.+..+..++++.. +++.++++.|...| ..+|+++ |.|++|+|. =| +|..- ...++++.-+.- T Consensus 187 ~~~~~~~~P~~i~~~~~~~~~~~a~~i~~~l~~~G--v~~vEf~v~~~~~~v~Einp-R~~~sg~~t-~~~~~~sqfe~~ 262 (355) T 3eth_A 187 GILRTSVAFPQANAQQQARAEEMLSAIMQELGYVG--VMAMECFVTPQGLLINELAP-RVHNSGHWT-QNGASISQFELH 262 (355) T ss_dssp TEEEEEEECSSCCHHHHHHHHHHHHHHHHHHTCCE--EEEEEEEEETTEEEEEEEES-SCCGGGTTH-HHHSSSCHHHHH T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEEECCCEEEEEECC-CCCCCEEEE-ECCCCCCHHHHH T ss_conf 54203302510106899999999999998564717--64889999789569999658-756754248-267888999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780696|r 307 WDGI 310 (316) Q Consensus 307 ~d~i 310 (316) +..+ T Consensus 263 ira~ 266 (355) T 3eth_A 263 LRAI 266 (355) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9998 No 23 >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Probab=99.41 E-value=6.7e-11 Score=90.42 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=152.4 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEH-HHE-EEECCEEEEEEEEEEEECCCCCEEEECCC--- Q ss_conf 9653318997099888484764679999999988988999954-124-89998999999999980777412650464--- Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTP-DQL-YMRDSKIYANTQPLSLDEKKEQYYSLGEE--- 75 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~-~dL-~~~~g~v~A~~~~i~i~~~~~~~f~~~~~--- 75 (316) +|+++||++. + ..---++++++|++.|++.-.... .|- +.. + ...+..|.++.. T Consensus 3 ~~~~kkvLia-n-------rGeia~ri~ra~relGi~tVav~s~~D~~s~~----------~---~~AD~~~~i~~~~~~ 61 (461) T 2dzd_A 3 TRRIRKVLVA-N-------RGEIAIRVFRACTELGIRTVAIYSKEDVGSYH----------R---YKADEAYLVGEGKKP 61 (461) T ss_dssp CCCCSEEEEC-S-------CHHHHHHHHHHHHHHTCEEEEEECGGGTTCTH----------H---HHSSSEEECSTTSCT T ss_pred CCCCCEEEEE-C-------CCHHHHHHHHHHHHCCCEEEEEECHHHHCCCC----------H---HHCCEEEEECCCCCC T ss_conf 8766689998-9-------72999999999998799699992847737899----------8---789999991898873 Q ss_pred --CCCC---------HHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCC Q ss_conf --4352---------100636688328862247999999998623585-04117488752565034334543----0443 Q gi|254780696|r 76 --KIID---------LSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPP 139 (316) Q Consensus 76 --~~~~---------L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~ 139 (316) .-++ -...|+|++=-. |-.+-......++. .+. ++-.+|.+|+.+.||...-++.. ++|+ T Consensus 62 ~~sYld~e~Ii~ia~~~~~daIhPgyG--flsEna~~a~~~~~--~gi~~iGps~~~i~~~gdK~~~r~~~~~~gvp~~p 137 (461) T 2dzd_A 62 IEAYLDIEGIIEIAKAHDVDAIHPGYG--FLSENIQFAKRCRE--EGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIP 137 (461) T ss_dssp TGGGTCHHHHHHHHHHTTCCEEECCSS--SSTTCHHHHHHHHH--TTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCC T ss_pred CCCCCCHHHHHHHHHHHCCCEEECCHH--HHHHCHHHHHHHHH--CCCEEECCCHHHHHHCCCHHHHHHHHHHCCCCCCC T ss_conf 322269999999999978699985876--76329899999997--69778579999998636989989999986998356 Q ss_pred --CEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCCCCCE Q ss_conf --100037245568888521-4331116885434468744887115889999984-----00133400210534456826 Q gi|254780696|r 140 --TLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIRDGDK 211 (316) Q Consensus 140 --T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~~gD~ 211 (316) ....++.+++.++.++.| |+++||.+|.||+|+..+. +..++...++...+ .+..++++.+||+... .+ T Consensus 138 ~~~~~~~~~eea~~~a~~iGyPviiKps~ggGGrGm~vV~-~~~el~~a~~~a~~ea~~~fg~~~v~vEk~i~~~r--hi 214 (461) T 2dzd_A 138 GSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVR-SKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPK--HI 214 (461) T ss_dssp BCSSCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEEC-CGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCE--EE T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EE T ss_conf 6355689999999988751985897402478998725758-99999999999999888746998689998439974--99 Q ss_pred EEEEE-C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE--CC--EE Q ss_conf 99998-9--988632122045686000000147311100778999----99999999999849879999511--78--78 Q gi|254780696|r 212 RILLL-N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFTGIDVI--GD--YI 280 (316) Q Consensus 212 Rv~vi-~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii--g~--~i 280 (316) -|-++ | |.+++...|.-+-+ |.+--.-..+-...|+++.+ +.+.++++.|.-.| ...|.++ ++ |+ T Consensus 215 EVqvl~D~~g~~i~l~er~csiq--r~~qk~ie~aP~~~L~~~~~~~i~~~A~kia~~lgy~G--~~tVEflv~~~~~yf 290 (461) T 2dzd_A 215 EVQILGDYEGNIVHLYERDCSVQ--RRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVN--AGTVEFLVSGDEFYF 290 (461) T ss_dssp EEEEEECTTCCEEEEEEEEEEEE--ETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCE--EEEEEEEEETTEEEE T ss_pred EEEEEECCCCCEEEEECCCCCCC--CCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCEEEE T ss_conf 99999838881999735346677--66886505579998989999999999999999859655--515899852866999 Q ss_pred EEEECCCCHH-HHHHHHHCCCCHHHHHHH Q ss_conf 8983688303-788997519998999999 Q gi|254780696|r 281 TEINVTSPTC-IREIHRNGGENVASLFWD 308 (316) Q Consensus 281 ~EvNvtsP~g-~~~~~~~~~~~i~~~i~d 308 (316) +|+| +=+.. -.=.+.+||+|+.+.-+. T Consensus 291 lEvN-pR~qveh~vte~~tGidlv~~qi~ 318 (461) T 2dzd_A 291 IEVN-PRIQVEHTITEMITGIDIVQSQIL 318 (461) T ss_dssp EEEE-SSCCGGGHHHHHHHCCCHHHHHHH T ss_pred EEEE-CCCCCCCCEEEEECCCCHHHHHHH T ss_conf 9863-232687651120108857999999 No 24 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Probab=99.38 E-value=5.6e-11 Score=90.92 Aligned_cols=284 Identities=13% Similarity=0.111 Sum_probs=155.2 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE-EHHH-EEEE---CCEEEEEEEEEEEECCC---CCEEEE Q ss_conf 96533189970998884847646799999999889889999-5412-4899---98999999999980777---412650 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY-TPDQ-LYMR---DSKIYANTQPLSLDEKK---EQYYSL 72 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~-~~~d-L~~~---~g~v~A~~~~i~i~~~~---~~~f~~ 72 (316) ||.++||++- + ..---++++++|++.|++.-.. ...| .+.. -.+. +.+.... ..+... T Consensus 1 m~~~~~~lia-n-------rg~ia~r~~r~~~~~g~~~v~v~s~~d~~~~~~~~ad~~------~~~~~~~~~~~~yl~~ 66 (1150) T 3hbl_A 1 MKQIKKLLVA-N-------RGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADES------YLVGSDLGPAESYLNI 66 (1150) T ss_dssp --CCCEEEEC-C-------CHHHHHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEE------EECCTTSCTTGGGTCH T ss_pred CCCCCEEEEE-C-------CCHHHHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEE------EECCCCCCHHHCCCCH T ss_conf 9978889998-9-------719999999999986993999818478468897887888------9828988633211599 Q ss_pred CCC-CCCCHHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HC-CCC-EEE Q ss_conf 464-43521006366883288-62247999999998623585041-17488752565034334543----04-431-000 Q gi|254780696|r 73 GEE-KIIDLSQMDVILIRQDP-PFNMHYITSTYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LM-PPT-LIS 143 (316) Q Consensus 73 ~~~-~~~~L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~-P~T-~vt 143 (316) ..- +...-...|+|++=-.- .-|..+. ..++. .|..+| -+|.+++.+.+|..+-++.. ++ |-+ -.. T Consensus 67 ~~i~~~a~~~~~~ai~pgygflsen~~~a---~~~~~--~gi~~iGp~~~~~~~~~~K~~~k~~~~~~gvp~~p~~~~~~ 141 (1150) T 3hbl_A 67 ERIIDVAKQANVDAIHPGYGFLSENEQFA---RRCAE--EGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPI 141 (1150) T ss_dssp HHHHHHHHHTTCSEEECTTTTSTTCHHHH---HHHHH--TTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCB T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCHHHH---HHHHH--CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 99999999979299965844032499999---99998--79979896999999835999999999986998488968777 Q ss_pred CCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCCCCCEEEEEE- Q ss_conf 37245568888521-4331116885434468744887115889999984-----0013340021053445682699998- Q gi|254780696|r 144 RDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIRDGDKRILLL- 216 (316) Q Consensus 144 ~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~~gD~Rv~vi- 216 (316) ++.+++.++.++.| |+|+||.+|.||+|+..+. +..++...++...+ -+...++++|||+..+ .+-|-++ T Consensus 142 ~~~~~a~~~a~~ig~PvvlK~~~g~gG~G~~~v~-~~~el~~a~~~~~~~~~~~f~~~~v~iE~~~~~~~--~iev~v~~ 218 (1150) T 3hbl_A 142 KSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVR-EESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPK--HIEVQVIG 218 (1150) T ss_dssp CSSSTTTTTGGGTCSSEEEECCC-------CEEC-CSSSCTHHHHSSSSSCC------CBEEECCCSSCE--EEEEEEEE T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EEEEEEEE T ss_conf 9999999999866998999988899978857889-99999999999999999736998689998338985--99999998 Q ss_pred C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCE-EEEEEEE----CCEEEEEECCCC Q ss_conf 9--988632122045686000000147311100778999-9999999999984987-9999511----787889836883 Q gi|254780696|r 217 N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLF-FTGIDVI----GDYITEINVTSP 288 (316) Q Consensus 217 ~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~-~~GiDii----g~~i~EvNvtsP 288 (316) | |.+++...|..+- -|.|--.+..+-...++++.+ +++..+.+..++.|.. ...|+++ +.|++|||. =+ T Consensus 219 d~~g~~i~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~vef~~~~~~~~~~E~n~-R~ 295 (1150) T 3hbl_A 219 DEHGNIVHLFERDCSV--QRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP-RV 295 (1150) T ss_dssp CSSSCEEEEEEEEEEE--ESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTEEEEEEEEC-SC T ss_pred ECCCCEEEEECCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEC-CC T ss_conf 3899989963346766--66688725981799999999999999999999757954403799999899489999879-98 Q ss_pred HH-HHHHHHHCCCCHHHHHHHH Q ss_conf 03-7889975199989999999 Q gi|254780696|r 289 TC-IREIHRNGGENVASLFWDG 309 (316) Q Consensus 289 ~g-~~~~~~~~~~~i~~~i~d~ 309 (316) .. -.-.+..+|+|+.+..+.. T Consensus 296 ~~e~~~te~~~g~dlv~~~i~~ 317 (1150) T 3hbl_A 296 QVEHTITEMVTGIDIVKTQILV 317 (1150) T ss_dssp CTTHHHHHHHHCCCHHHHHHHH T ss_pred CCCCCCEEEEECCCHHHHHHHH T ss_conf 9876415655479869999986 No 25 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=99.38 E-value=4.3e-11 Score=91.71 Aligned_cols=278 Identities=14% Similarity=0.170 Sum_probs=157.3 Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCC--CEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH Q ss_conf 3189970998884847646799999999889--88999954124899989999999999807774126504644352100 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRG--YQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ 82 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RG--heV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~ 82 (316) |||+++..-= ---||+++.++-. .++|+.. .+-.+.. . +..+.++... +-.+. +...-.+ T Consensus 1 mkvliiG~Gg--------rEha~~~~l~~~~~~~~~~~~~-~N~g~~~---~--~~~~~~~~~d--~~~i~--~~~~~~~ 62 (424) T 2yw2_A 1 MKVLVVGNGG--------REHAIAWKVAQSPLVKELYVAK-GNAGIWE---I--AKRVDISPTD--VEKLA--EFAKNEG 62 (424) T ss_dssp CEEEEEESSH--------HHHHHHHHHTTCTTCSEEEEEE-CCTTGGG---T--SEEECSCTTC--HHHHH--HHHHHHT T ss_pred CEEEEECCCH--------HHHHHHHHHHHCCCCCEEEEEC-CCHHHHH---H--CCEEEECCCC--HHHHH--HHHHHHC T ss_conf 9899989589--------9999999998589988899988-9888985---4--3008628899--99999--9999969 Q ss_pred CCEEEEECCCCCCHHHHHH--HHHHHHHCCCCEE-ECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH Q ss_conf 6366883288622479999--9999862358504-117488752565034334543----04431000372455688885 Q gi|254780696|r 83 MDVILIRQDPPFNMHYITS--TYLLEKINPETLI-VNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE 155 (316) Q Consensus 83 fD~i~iR~dPp~d~~yi~~--~~~Le~~~~~~~v-iN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~ 155 (316) .|.|++= | ..++.. ...|+. .+..+ -+++.+.+...+|.++-++.+ ++|+-.+.+|.+++.+|+++ T Consensus 63 id~vi~g--~---e~~l~~~~a~~l~~--~gi~~~gp~~~~~~~~~~K~~~k~~~~~~gipt~~~~~~~~~~ea~~~~~~ 135 (424) T 2yw2_A 63 VDFTIVG--P---EAPLVEGIVDEFEK--RGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEK 135 (424) T ss_dssp CSEEEEC--S---HHHHHTTHHHHHHH--TTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHH T ss_pred CCEEEEC--C---CHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 9999989--8---47888889999986--798313848999999868899999999849896344455619999999986 Q ss_pred HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEEC Q ss_conf 21-4331116885434468744887115889999984-----0013340021053445682699998998863-212204 Q gi|254780696|r 156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIP 228 (316) Q Consensus 156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~ 228 (316) .+ |+|+||..++||+||..+.. ...+...++.... .....++++||+.... -..=+++-++.++- ...|-. T Consensus 136 ~g~P~VIKp~~~~gGkGv~v~~~-~~e~~~al~~~~~~~~~~~~~~~vlvEe~l~G~e-~s~~~~~dg~~~~~~~~~~d~ 213 (424) T 2yw2_A 136 VGAPIVVKADGLAAGKGAVVCET-VEKAIETLDRFLNKKIFGKSSERVVIEEFLEGEE-ASYIVMINGDRYVPLPTSQDH 213 (424) T ss_dssp HCSSEEEEESSCCTTCSEEEESS-HHHHHHHHHHHHTSCTTGGGGSSEEEEECCCSEE-EEEEEEEETTEEEECCCBEEC T ss_pred CCCCEEEEECCCCCCCCCEEEEE-HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-EEEEEEECCCCCCCCCHHHHE T ss_conf 49978998578767777388850-2668999999753212126787389998753862-179999879942525118642 Q ss_pred C-CCCCCCCCCCCCCEEEE---ECCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEECCCCH--H Q ss_conf 5-68600000014731110---077899-----999999999999849879999---511----7878898368830--3 Q gi|254780696|r 229 S-EVDNRSNIHAGGKAELT---KLTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINVTSPT--C 290 (316) Q Consensus 229 ~-~~~~r~Nl~~Gg~~~~~---~lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNvtsP~--g 290 (316) + ..+-..--+.||...-. .++++. .++...+.+.|.+.|+.|.|+ +++ |.|++|+|.- |+ + T Consensus 214 k~~~~~~~gp~tggmg~~~P~~~~~~~~~~~i~~~i~~~~~~al~~~g~~~~G~l~~~~~~t~~g~~viE~N~R-~gd~e 292 (424) T 2yw2_A 214 KRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITKEGPKVLEFNVR-LGDPE 292 (424) T ss_dssp CEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEETTEEEEEEEESS-CCTTT T ss_pred ECCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECC-CCCCC T ss_conf 05346888997688658716812219999999999999999999861875035422200024688089998357-78762 Q ss_pred HHHHHHHCCCCHHHHHHHHH Q ss_conf 78899751999899999999 Q gi|254780696|r 291 IREIHRNGGENVASLFWDGI 310 (316) Q Consensus 291 ~~~~~~~~~~~i~~~i~d~i 310 (316) .+-+...++.|+...++... T Consensus 293 ~~~~~~~~~~dl~~~~~~~a 312 (424) T 2yw2_A 293 AQPILMRVKNDFLETLLNFY 312 (424) T ss_dssp HHHHHHTBCSCHHHHHHHHH T ss_pred EEEEEEEECCCHHHHHHHHH T ss_conf 03463100885999999997 No 26 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=99.25 E-value=4.5e-10 Score=84.97 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=159.7 Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCC--EEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH Q ss_conf 31899709988848476467999999998898--8999954124899989999999999807774126504644352100 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGY--QIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ 82 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGh--eV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~ 82 (316) |||+++..-= ---+|++..++.+. ++|++ |..-.+. ..+. .+.+..+.+.-.+. ..-.+ T Consensus 1 MkVLviGsGg--------rEhAia~~l~~~~~~~~v~~~-pgN~g~~---~~~~--~~~~~~d~~~i~~~-----~~~~~ 61 (417) T 2ip4_A 1 MKVLVVGSGG--------REHALLWKAAQSPRVKRLYAA-PGNAGME---ALAE--LVPWNGDVEALADW-----ALAEG 61 (417) T ss_dssp CEEEEEESSH--------HHHHHHHHHHTCSSCCEEEEE-ECCTTGG---GTSE--ECCCCSCHHHHHHH-----HHHHT T ss_pred CEEEEECCCH--------HHHHHHHHHHHCCCCCEEEEE-CCCHHHH---HHCE--EECCCCCHHHHHHH-----HHHHC T ss_conf 9899989789--------999999999729998989996-8976777---5174--21566899999999-----99859 Q ss_pred CCEEEEECCCCCC-HHHHHHHHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH Q ss_conf 6366883288622-47999999998623585041-17488752565034334543----044310003724556888852 Q gi|254780696|r 83 MDVILIRQDPPFN-MHYITSTYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM 156 (316) Q Consensus 83 fD~i~iR~dPp~d-~~yi~~~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~ 156 (316) .|.+++ .|.-- ..++. -.|+. .+..|+ .+..+.+...+|.++-+|.+ ++|+-.+.+|.+++.+|++++ T Consensus 62 idlviv--GpE~pL~~gl~--d~l~~--~gi~v~Gp~~~~a~le~sK~~~k~~m~~~gIpt~~~~~~~~~~ea~~~~~~~ 135 (417) T 2ip4_A 62 IDLTLV--GPEAPLVEGIA--DAFQA--RGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEV 135 (417) T ss_dssp CCEEEE--CSSHHHHTTHH--HHHHH--HTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHH T ss_pred CCEEEE--CCCHHHHHHHH--HHHHH--CCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHC T ss_conf 999998--97478887889--99985--7997658707788877678999999998198988854993589999999976 Q ss_pred H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEECCCCCCCCCEEEEEE-CC-EEE--EEEEE--EC Q ss_conf 1-43311168854344687448871158899999840-013340021053445682699998-99-886--32122--04 Q gi|254780696|r 157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK-YPEPLMIQSYLPQIRDGDKRILLL-NG-KPV--GAVNR--IP 228 (316) Q Consensus 157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~-~~~~ii~Qefi~~~~~gD~Rv~vi-~g-~~v--~a~~R--~~ 228 (316) + |+|+||...++|+||..+. +...+...++..... ....++++|||.. -+.-++++ +| .++ ++... .. T Consensus 136 ~~P~ViKp~~~a~gkGv~i~~-~~~e~~~~~~~~~~~~~~~~VlIEE~l~G---~E~s~~~~~dg~~~~~l~~~qd~kr~ 211 (417) T 2ip4_A 136 GVPVVVKDSGLAAGKGVTVAF-DLHQAKQAVANILNRAEGGEVVVEEYLEG---EEATVLALTDGETILPLLPSQDHKRL 211 (417) T ss_dssp CSSEEEECTTSCSSTTCEEES-CHHHHHHHHHHHTTSSSCCCEEEEECCCS---CEEEEEEEESSSCEEECCCBEECCEE T ss_pred CCCEEEECCCCCCCCCEEEEC-CHHHHHHHHHHHHHHCCCCEEHHHHHHCC---CCCEEEEEECCCCCCCCCCCCCCCCC T ss_conf 998899727878987646640-07888888764320046860607656354---55258999637853346642254134 Q ss_pred CCCCCCCCCCCCCCEEEEECCHHH-----HHHHHHHHHHHHHCCCEEEEEE---EE----CCEEEEEECCC--CHHHHHH Q ss_conf 568600000014731110077899-----9999999999998498799995---11----78788983688--3037889 Q gi|254780696|r 229 SEVDNRSNIHAGGKAELTKLTKID-----LDICKRIGESLRERGLFFTGID---VI----GDYITEINVTS--PTCIREI 294 (316) Q Consensus 229 ~~~~~r~Nl~~Gg~~~~~~lt~~~-----~~i~~~~~~~L~~~gl~~~GiD---ii----g~~i~EvNvts--P~g~~~~ 294 (316) .+||---|..--|...+..+++++ +++...+.+.|+..|+.|.|+= ++ |+||+|.|+-- | ..+-+ T Consensus 212 ~~gd~GpntggmGa~~p~~~~~~~~~~~~~~i~~~~~~~l~~~g~~y~G~l~~glmlt~~gp~viE~N~R~Gdp-e~~~~ 290 (417) T 2ip4_A 212 LDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREGPKVLEFNARFGDP-EAQAL 290 (417) T ss_dssp ETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSCEEEEEEESSCCTT-HHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCCCCC-CCCEE T ss_conf 56999998898767788863047899999999999999999719974430010347845887799985135898-65346 Q ss_pred HHHCCCCHHHHHHHHHHH Q ss_conf 975199989999999988 Q gi|254780696|r 295 HRNGGENVASLFWDGIEK 312 (316) Q Consensus 295 ~~~~~~~i~~~i~d~ie~ 312 (316) ....+.|+...+...+.. T Consensus 291 l~~l~~dl~~~~~~~~~g 308 (417) T 2ip4_A 291 LPLLENDLVELALRVAEG 308 (417) T ss_dssp TTTBCSCHHHHHHHHHHT T ss_pred EECCCCCHHHHHHHHHCC T ss_conf 522467658889986448 No 27 >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Probab=99.25 E-value=9.5e-09 Score=76.30 Aligned_cols=266 Identities=14% Similarity=0.119 Sum_probs=145.6 Q ss_pred CHHHHHHHHHHCCCEEEEE-EHHH-EEEE---CCEEEEEEEEEEEECCCCCEEEECCC-CCCCHHHCCEEEEECCCCCCH Q ss_conf 6799999999889889999-5412-4899---98999999999980777412650464-435210063668832886224 Q gi|254780696|r 23 STFAIALEAQVRGYQIFHY-TPDQ-LYMR---DSKIYANTQPLSLDEKKEQYYSLGEE-KIIDLSQMDVILIRQDPPFNM 96 (316) Q Consensus 23 TT~~Lm~eAq~RGheV~~~-~~~d-L~~~---~g~v~A~~~~i~i~~~~~~~f~~~~~-~~~~L~~fD~i~iR~dPp~d~ 96 (316) --+.++++|++.|+++... ...| .+.. -.+++ .+........+.....- +.......|+|++--. |-. T Consensus 12 iA~riira~relGi~tVaV~s~~D~~a~~~~~ADe~~----~i~~~~~~~syLd~~~Ii~ia~~~~~DaIhPGyG--fls 85 (451) T 2vpq_A 12 IAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAY----CVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYG--FLA 85 (451) T ss_dssp HHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEE----EEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSS--TTT T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHCCCCHHHCCEEE----EECCCCCCCCCCCHHHHHHHHHHHCCCEEEECHH--HHC T ss_conf 9999999999879959998483674688977889999----8189864234368999999999978299995866--634 Q ss_pred HHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCCE-EECCHHHHHHHHHHHH-HHHHHCCCCCC Q ss_conf 79999999986235850-4117488752565034334543----0-44310-0037245568888521-43311168854 Q gi|254780696|r 97 HYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPTL-ISRDITQITRFYLEMK-DIIIKPLYGNG 168 (316) Q Consensus 97 ~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T~-vt~~~~~~~~f~~~~~-~vViKPl~g~~ 168 (316) +-......++. .+.. +-=+|.+|+.+.||..+-+... + +|.+. ..+|.+++.++.++.| ||++||.+|.| T Consensus 86 En~~fa~~~~~--~gi~fIGPs~~~i~~~gdK~~ar~~a~~~gvPv~pg~~~~~~~~~ea~~~a~~IGyPviIKas~ggG 163 (451) T 2vpq_A 86 ENADFAELCEA--CQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGG 163 (451) T ss_dssp TCHHHHHHHHT--TTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETTCCT T ss_pred CCHHHHHHHHH--CCCEECCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 46677899997--5984607979999986486899999998699918997777799999999998739969999887899 Q ss_pred CCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEEEEEEE------ECCCCCCC Q ss_conf 344687448871158899999-----8400133400210534456826999989---988632122------04568600 Q gi|254780696|r 169 GTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPVGAVNR------IPSEVDNR 234 (316) Q Consensus 169 G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v~a~~R------~~~~~~~r 234 (316) |+|+..+. +..++...++.. ...+...+++++||+..++ +-|-+++ |.+++-..| ..++ .. T Consensus 164 GrGmriV~-~~~el~~a~~~a~~ea~~~f~~~~v~iE~~i~~~rh--iEvqvl~D~~G~~i~l~erdCSiqrr~qk--~i 238 (451) T 2vpq_A 164 GKGIRVAR-DEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRH--IEIQIVGDSYGNVIHLGERDCTIQRRMQK--LV 238 (451) T ss_dssp TCSEEEES-SHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEE--EEEEEEECTTSCEEEEEEEEEEEEETTEE--EE T ss_pred CCCCEEEC-CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEE--EEEEEEEECCCCEEEEECCCCCCCCCCCC--EE T ss_conf 88626875-824569999999999985479983899973599779--99999980899999994677677457886--69 Q ss_pred CCCCCCCCEEEE-ECCHHHH-HHHHHHHHHHHHCCCEE-EEEEEE----CC--EEEEEECCCCHHH-HHHHHHCCCCHHH Q ss_conf 000014731110-0778999-99999999999849879-999511----78--7889836883037-8899751999899 Q gi|254780696|r 235 SNIHAGGKAELT-KLTKIDL-DICKRIGESLRERGLFF-TGIDVI----GD--YITEINVTSPTCI-REIHRNGGENVAS 304 (316) Q Consensus 235 ~Nl~~Gg~~~~~-~lt~~~~-~i~~~~~~~L~~~gl~~-~GiDii----g~--~i~EvNvtsP~g~-~~~~~~~~~~i~~ 304 (316) .-.|. .|+++.+ +++..+.+..+..|+.= +-|.++ ++ |++|+| |-+.-- .=-+..||+|+.+ T Consensus 239 -------EeaPs~~l~~~~r~~~~~~A~~~~~~vgy~g~gtvEfl~d~~~~~~yflEvN-~Rlqveh~vTe~vtGidlv~ 310 (451) T 2vpq_A 239 -------EEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDNKFYFMEMN-TRIQVEHPVTEMVTGIDLVK 310 (451) T ss_dssp -------EEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTTEEEEEEEE-CSCCTTHHHHHHHHCCCHHH T ss_pred -------EECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECEEEEEEECCCCCEEEEEEC-CCCCCCEEEEEEEECCCHHH T ss_conf -------9889999999999999999999999829512120689995589958999723-77677511467231767899 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780696|r 305 LFWDG 309 (316) Q Consensus 305 ~i~d~ 309 (316) .-+.. T Consensus 311 ~qi~i 315 (451) T 2vpq_A 311 LQLQV 315 (451) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99998 No 28 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=99.19 E-value=2.2e-09 Score=80.42 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=158.8 Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCC--EEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC Q ss_conf 65331899709988848476467999999998898--8999954124899989999999999807774126504644352 Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGY--QIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID 79 (316) Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGh--eV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~ 79 (316) +++|||+++..-=. --||.+...+-.. ++|++ |.+-.+. -.+. .+.++. .++-.+. +... T Consensus 19 ~~~mkvLviGsGgr--------EhAia~~l~~s~~~~~v~~~-pgN~g~~---~~~~--~~~i~~--~d~~~i~--~~~~ 80 (451) T 2yrx_A 19 QSHMNVLVIGRGGR--------EHAIAWKAAQSPLVGKLYVA-PGNPGIA---DVAE--LVHIDE--LDIEALV--QFAK 80 (451) T ss_dssp CSSEEEEEEECSHH--------HHHHHHHHHTCTTEEEEEEE-ECCTTGG---GTSE--ECCCCT--TCHHHHH--HHHH T ss_pred HCCCEEEEECCCHH--------HHHHHHHHHHCCCCCEEEEE-CCCHHHH---HHCE--EEECCC--CCHHHHH--HHHH T ss_conf 12978999897889--------99999999749898989997-8987998---5170--462486--8999999--9999 Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHH Q ss_conf 100636688328862247999999998623-585041-17488752565034334543----044310003724556888 Q gi|254780696|r 80 LSQMDVILIRQDPPFNMHYITSTYLLEKIN-PETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFY 153 (316) Q Consensus 80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~-~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~ 153 (316) -.+.|.|++= | ..++.. .+-+.++ .+..|+ .+..+.+.-.+|.++-+|.+ ++|+..+.+|.+++.+|+ T Consensus 81 ~~~iD~vvvG--p---E~pL~~-gl~D~l~~~gi~v~Gp~~~aa~lE~sK~faK~~m~~~~IPta~~~~~~~~~ea~~~~ 154 (451) T 2yrx_A 81 QQAIDLTIVG--P---EAPLAS-GIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYI 154 (451) T ss_dssp HTTCSEEEEC--S---HHHHHT-THHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHH T ss_pred HHCCCEEEEC--C---CHHHHH-HHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHH T ss_conf 8399999989--7---578888-999999506994007789999987577989999997297987838997899999998 Q ss_pred HHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH-H----HCCCCCCEEECCCCCCCCCEEEEEE-CCEEEEEEE- Q ss_conf 8521-433111688543446874488711588999998-4----0013340021053445682699998-998863212- Q gi|254780696|r 154 LEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLF-E----KYPEPLMIQSYLPQIRDGDKRILLL-NGKPVGAVN- 225 (316) Q Consensus 154 ~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~-~----~~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~a~~- 225 (316) ++++ |+|+||..+++|+||..+. +...+...+.... . .....++++||+... ++-++.+ ||+-+..+. T Consensus 155 ~~~g~P~VIK~~glagGKGv~v~~-~~~e~~~a~~~~~~~~~~g~~~~~VvIEE~l~G~---E~S~~~~~dG~~~~~~~~ 230 (451) T 2yrx_A 155 EQKGAPIVIKADGLAAGKGVTVAQ-TVEEALAAAKAALVDGQFGTAGSQVVIEEYLEGE---EFSFMAFVNGEKVYPLAI 230 (451) T ss_dssp HHHCSSEEEEECC----CCEEEES-SHHHHHHHHHHHHHHSCCBTTBCCEEEEECCCSE---EEEEEEEEETTEEEECCC T ss_pred HHCCCCEEEECCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC---CEEEEEEECCCEEEECHH T ss_conf 604996699616455678730232-1566788888763023335678708833404887---226899943998883631 Q ss_pred -----EECCCCCCCCCCCCCCCEEEEE---CCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEEC Q ss_conf -----2045686000000147311100---77899-----999999999999849879999---511----787889836 Q gi|254780696|r 226 -----RIPSEVDNRSNIHAGGKAELTK---LTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINV 285 (316) Q Consensus 226 -----R~~~~~~~r~Nl~~Gg~~~~~~---lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNv 285 (316) |. .+||.= ...||...-.+ +++++ +++...+...|...|+.|.|+ +++ |.||+|+|+ T Consensus 231 ~~d~Kr~-~~gd~G--pnTGgMGa~~P~~~~~~~~~~~i~~~i~~~~~~~l~~~g~~y~Gvl~~~lmlt~~gp~viE~N~ 307 (451) T 2yrx_A 231 AQDHKRA-YDGDEG--PNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANGPKVIEFNA 307 (451) T ss_dssp BEECCEE-ETTTEE--EECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEES T ss_pred HHCEEEC-CCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEC T ss_conf 3051221-268988--8768863006685201678888888899999999986599716787667776179716998422 Q ss_pred C--CCHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 8--8303788997519998999999998 Q gi|254780696|r 286 T--SPTCIREIHRNGGENVASLFWDGIE 311 (316) Q Consensus 286 t--sP~g~~~~~~~~~~~i~~~i~d~ie 311 (316) - .| ..+-+...++.|+...+...+. T Consensus 308 R~GDp-e~q~vl~~l~~dl~~~~~~~~~ 334 (451) T 2yrx_A 308 RFGDP-EAQVVLPRLKTDLVEAVLAVMD 334 (451) T ss_dssp SCCTT-HHHHHGGGBCSCHHHHHHHHHT T ss_pred CCCCC-EEEEEECCCCCCHHHHHHHHHC T ss_conf 57997-0158850246889999999976 No 29 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Probab=99.19 E-value=3e-09 Score=79.63 Aligned_cols=267 Identities=13% Similarity=0.099 Sum_probs=149.1 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEE---E--CCEEEEEEEEEEEECCCCCEEEECCCCCC Q ss_conf 331899709988848476467999999998898899995412489---9--98999999999980777412650464435 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYM---R--DSKIYANTQPLSLDEKKEQYYSLGEEKII 78 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~---~--~g~v~A~~~~i~i~~~~~~~f~~~~~~~~ 78 (316) .+||+++..- --..+|++||++.|+++.++++.+.-- . +..+.+ . ..+.+ .... T Consensus 24 ~k~IgIlG~G--------QLg~ml~~aA~~LGi~v~vld~~~~pa~~va~ad~~i~~-----~-~~D~~-------al~~ 82 (403) T 3k5i_A 24 SRKVGVLGGG--------QLGRMLVESANRLNIQVNVLDADNSPAKQISAHDGHVTG-----S-FKERE-------AVRQ 82 (403) T ss_dssp CCEEEEECCS--------HHHHHHHHHHHHHTCEEEEEESTTCTTGGGCCSSCCEES-----C-TTCHH-------HHHH T ss_pred CCEEEEECCC--------HHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCCEEEEC-----C-CCCHH-------HHHH T ss_conf 9889998687--------999999999997899899996899986651005206977-----8-89999-------9999 Q ss_pred CHHHCCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCC--EEECCHHHHHH Q ss_conf 21006366883-2886224799999999862358504117488752565034334543----04431--00037245568 Q gi|254780696|r 79 DLSQMDVILIR-QDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPT--LISRDITQITR 151 (316) Q Consensus 79 ~L~~fD~i~iR-~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T--~vt~~~~~~~~ 151 (316) -....|+|-.= -+-|++ .|+.++..+.|.=+|.+++.+.||+..=+|.+ ++|+- .+.++.+++.+ T Consensus 83 ~a~~~DvIT~E~Eni~~~--------~l~~l~~~~~v~P~~~al~~~qdR~~eK~~l~~~gipt~~~~~~~~~s~~dl~~ 154 (403) T 3k5i_A 83 LAKTCDVVTAEIEHVDTY--------ALEEVASEVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAK 154 (403) T ss_dssp HHTTCSEEEESSSCSCHH--------HHHHHTTTSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHH T ss_pred HHHCCCEEEECCCCCCHH--------HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH T ss_conf 986199999830307788--------999871888317998999988779999998886599988750336689999999 Q ss_pred HHHHHH-HHHHHCC-CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCE-EEEEEEEEC Q ss_conf 888521-4331116-8854344687448871158899999840013340021053445682699998998-863212204 Q gi|254780696|r 152 FYLEMK-DIIIKPL-YGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGK-PVGAVNRIP 228 (316) Q Consensus 152 f~~~~~-~vViKPl-~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~-~v~a~~R~~ 228 (316) +.++.| |+|+||. .|++|+|.++++.. .++...+.. ....++++.+|++ ....+-++++.+. -+..+.+ T Consensus 155 ~~~~iG~P~vlK~~~~Gydg~gq~~i~~~-~d~~~~~~~---~~~~~~i~E~~v~--~~~Eisviv~r~~~~i~~~p~-- 226 (403) T 3k5i_A 155 VGEQLGYPLMLKSKTMAYDGRGNFRVNSQ-DDIPEALEA---LKDRPLYAEKWAY--FKMELAVIVVKTKDEVLSYPT-- 226 (403) T ss_dssp HHHHHCSSEEEEESSSCCTTTTEEEECST-TSHHHHHHH---TTTSCEEEEECCC--EEEEEEEEEEECSSCEEECCC-- T ss_pred HHHHCCCCEEEEECEECCCCCCCEECCCH-HHHHHHHHH---CCCCEEEEEEEEE--EEEEEEEEEEECCCCEEEECC-- T ss_conf 99971898899964056688773301422-457888751---3785489875665--776543789861586599478-- Q ss_pred CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHC--CCEEEEEEEE----CC-EEEEEECCCCH--HHHHHHHHCC Q ss_conf 56860000001473111007789999999999999984--9879999511----78-78898368830--3788997519 Q gi|254780696|r 229 SEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRER--GLFFTGIDVI----GD-YITEINVTSPT--CIREIHRNGG 299 (316) Q Consensus 229 ~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~--gl~~~GiDii----g~-~i~EvNvtsP~--g~~~~~~~~~ 299 (316) .++..+.+.-.-..+-+..++++..+-+.+++..+.+. +.-..+|.+. |. |+.|+| +-|. |..- ...++ T Consensus 227 ~e~~~~~~~~~~~~~p~~~i~~~~~~~a~~~a~~i~~~l~~vGv~~vEff~~~~g~~~vnEia-PR~hnsgh~T-~~~~~ 304 (403) T 3k5i_A 227 VETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIA-SRIHNSGHYT-IEGCA 304 (403) T ss_dssp EEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEE-SSCCGGGTTH-HHHBS T ss_pred CEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEEEC-CCCCCCCCEE-ECCCC T ss_conf 460404897058985797676689999999999999854788637999999469809999924-8877773466-43654 Q ss_pred CCHHHHHHHH Q ss_conf 9989999999 Q gi|254780696|r 300 ENVASLFWDG 309 (316) Q Consensus 300 ~~i~~~i~d~ 309 (316) ++.=+.-+.. T Consensus 305 ~sqfe~hiRa 314 (403) T 3k5i_A 305 LSQFDAHLRA 314 (403) T ss_dssp SCHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 6799999999 No 30 >2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Probab=99.19 E-value=5e-11 Score=91.23 Aligned_cols=240 Identities=15% Similarity=0.203 Sum_probs=123.5 Q ss_pred CCCCHHHHHHHHHHCCCEEEEEE-HHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHH Q ss_conf 76467999999998898899995-41248999899999999998077741265046443521006366883288622479 Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIFHYT-PDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHY 98 (316) Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~~~~-~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~y 98 (316) ...|++.++++|++.|+++-.+. .++-.. ++. .....+.|-........+.+.|.|+. |.++..- T Consensus 9 ~s~sal~i~~aAkelG~~Ti~v~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~~d~vi~---~~~~~~~ 74 (334) T 2r85_A 9 ASHSALQILKGAKDEGFETIAFGSSKVKPL-----YTK------YFPVADYFIEEKYPEEELLNLNAVVV---PTGSFVA 74 (334) T ss_dssp SSTTHHHHHHHHHHTTCCEEEESCGGGHHH-----HHT------TSCCCSEEECSSCCHHHHHHTTEEEC---CCTTHHH T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCC------CCHHHHHHCCCCHHHHHHHCCCEEEE---CCCCHHH T ss_conf 335999999999987997999977997643-----557------30336887186168999618993895---8988189 Q ss_pred HHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEE Q ss_conf 9999999862358504117488752565034334543----0443100037245568888521-4331116885434468 Q gi|254780696|r 99 ITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVF 173 (316) Q Consensus 99 i~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~ 173 (316) ......++.. +..++=+|.+++.+.||...-++.+ ++|+++ ++.++.+ |+|+||.+|+||+|++ T Consensus 75 ~~~a~~~e~~--g~~~~gs~~~l~~~~dK~~~k~~l~~~Gip~p~~~---------~~~~~ig~PvivKp~~g~gg~G~~ 143 (334) T 2r85_A 75 HLGIELVENM--KVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEVY---------EDPDDIEKPVIVKPHGAKGGKGYF 143 (334) T ss_dssp HHCHHHHHTC--CSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCBC---------SCGGGCCSCEEEEECC----TTCE T ss_pred HHHHHHHHHC--CCCEECCHHHHHHHHCHHHHHHHHHHCCCCCCHHH---------HHHHHCCCCEEEEECCCCCCCEEE T ss_conf 9999999977--99664889999986599999999998597997467---------648766982588554789993379 Q ss_pred EECCCCCCHHHHHHHHHHH----CCCCCCEEECCCCCC--------CCCEEE--EEE-CCEEE--EEEEEECCCCCCCCC Q ss_conf 7448871158899999840----013340021053445--------682699--998-99886--321220456860000 Q gi|254780696|r 174 RITLGDRNFSSLIEMLFEK----YPEPLMIQSYLPQIR--------DGDKRI--LLL-NGKPV--GAVNRIPSEVDNRSN 236 (316) Q Consensus 174 ~i~~~~~~~~~~~e~~~~~----~~~~ii~Qefi~~~~--------~gD~Rv--~vi-~g~~v--~a~~R~~~~~~~r~N 236 (316) ++. +..++...++..... ....+++|||++... .++..+ +.. +|..+ ....|.+..+.-... T Consensus 144 iv~-~~~el~~~~~~~~~~~~~~~~~~~iiee~i~G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (334) T 2r85_A 144 LAK-DPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFD 222 (334) T ss_dssp EES-SHHHHHHHHHHHHCCCSGGGCCSEEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHHTTSC T ss_pred EEC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCEEEECCEEEECCCEEEECE T ss_conf 977-9999999999998765427888779999835846876653256530699999648975782545434620221111 Q ss_pred CCC-----CCCE--EEEECCHHHHHHHHHHHHHHHHC-C--CEEEEEEEE----CC-EEEEEEC Q ss_conf 001-----4731--11007789999999999999984-9--879999511----78-7889836 Q gi|254780696|r 237 IHA-----GGKA--ELTKLTKIDLDICKRIGESLRER-G--LFFTGIDVI----GD-YITEINV 285 (316) Q Consensus 237 l~~-----Gg~~--~~~~lt~~~~~i~~~~~~~L~~~-g--l~~~GiDii----g~-~i~EvNv 285 (316) ... |.-+ .+.++.++.++++.++++.+... | .-..+++++ |+ |++|||. T Consensus 223 ~~~~~~~~~~~p~~l~~~~~~~~~~~a~~i~~al~~~~~~~~G~~~vE~~v~~dg~~~viEinp 286 (334) T 2r85_A 223 MDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISA 286 (334) T ss_dssp CCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEEEEEC T ss_pred EECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEC T ss_conf 5517862475699899999999999999999999886287536469999994899899999879 No 31 >1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=99.15 E-value=1.1e-08 Score=75.86 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=116.6 Q ss_pred CCCEEE-CCHHHHHHCCCHHHHHHHHH----HC-CCC-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCC Q ss_conf 585041-17488752565034334543----04-431-00037245568888521-433111688543446874488711 Q gi|254780696|r 110 PETLIV-NNPFWIRNSPEKIFVTEFSE----LM-PPT-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRN 181 (316) Q Consensus 110 ~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~-P~T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~ 181 (316) .|..+| -+|++|+.+.||..+-++.+ ++ |-+ -...|.+++.++.++.| |+++||.+|.||+|+..+. +..+ T Consensus 97 ~gi~fiGPs~~~i~~~gdK~~ar~~a~~~GvP~~pg~~~~~~s~~ea~~~a~~iGyPviiKa~~ggGGrGmriv~-~~~e 175 (451) T 1ulz_A 97 AGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICR-NEEE 175 (451) T ss_dssp TTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEES-SHHH T ss_pred CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC-CHHH T ss_conf 797473798999998369999999999869982899776669999999999864997999987689988637868-9899 Q ss_pred HHHHHHHHH-----HHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH Q ss_conf 588999998-----40013340021053445682699998---9988632122045686000000147311100778999 Q gi|254780696|r 182 FSSLIEMLF-----EKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL 253 (316) Q Consensus 182 ~~~~~e~~~-----~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~ 253 (316) +...++... ..+...+++.+||+...+ +-|-++ .|.+++...|.-+-. |.|--.=..+-+..|+++.+ T Consensus 176 l~~~~~~a~~ea~~~fg~~~v~iEk~i~~~rh--iEvqvl~D~~Gnvi~l~erdcsiq--rr~qk~ieeaPa~~l~~~~r 251 (451) T 1ulz_A 176 LVKNYEQASREAEKAFGRGDLLLEKFIENPKH--IEYQVLGDKHGNVIHLGERDCSIQ--RRNQKLVEIAPSLILTPEKR 251 (451) T ss_dssp HHHHHHHHHHHHHHTTSCCCEEEEECCCSCEE--EEEEEEECTTSCEEEEEEEEEEEE--ETTEEEEEEESCSSCCHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE--EEEEEEEECCCCEEEEEECCCCCC--CCCCCCCEECCCCCCCHHHH T ss_conf 99999999999998569985899982377479--899999968998899764046676--46777641467986899999 Q ss_pred -HHHHHHHHHHHHCCCEEE-EEEEE----C-CEEEEEECCCCHH-HHHHHHHCCCCHHHHHHH Q ss_conf -999999999998498799-99511----7-8788983688303-788997519998999999 Q gi|254780696|r 254 -DICKRIGESLRERGLFFT-GIDVI----G-DYITEINVTSPTC-IREIHRNGGENVASLFWD 308 (316) Q Consensus 254 -~i~~~~~~~L~~~gl~~~-GiDii----g-~~i~EvNvtsP~g-~~~~~~~~~~~i~~~i~d 308 (316) +++..+.+..++.|..=+ .|-++ | -|++|+| |=..- -.=-+..+|+|+-+.-+. T Consensus 252 ~~i~~~A~~~a~avgy~g~gTvEfl~d~~~~~yFlE~N-tRlQVEh~vTE~vtGiDlV~~qi~ 313 (451) T 1ulz_A 252 EYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMN-TRIQVEHPVSEMVTGIDIVKWQIK 313 (451) T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEE-CSCCTTHHHHHHHHCCCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEECC-CCCCCCCCEEEEEECCHHHHHHHH T ss_conf 99999999999984971111589998389987999624-666777530110007559999999 No 32 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=99.14 E-value=2e-08 Score=74.17 Aligned_cols=216 Identities=16% Similarity=0.216 Sum_probs=133.9 Q ss_pred HCCEEEEECCCCCCHHHHHH--HHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHH Q ss_conf 06366883288622479999--99998623585041-17488752565034334543----0443100037245568888 Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITS--TYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYL 154 (316) Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~--~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~ 154 (316) +.|.+++= | ..++.. .-.|+. .+..|+ -+..+-+.-.+|.++-+|.+ ++|+-.+.+|.+++.++++ T Consensus 83 ~iDlvvvG--p---E~pL~~Gi~D~l~~--~gi~vfGps~~~A~lE~sK~f~k~~m~~~~IPta~~~~~~~~~ea~~~~~ 155 (442) T 3lp8_A 83 KIELVVIG--P---ETPLMNGLSDALTE--EGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFID 155 (442) T ss_dssp TCCEEEEC--S---HHHHHTTHHHHHHH--TTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHH T ss_pred CCCEEEEC--C---CHHHHHHHHHHHHH--CCCCEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHH T ss_conf 99999989--8---38988788999974--89947864788988753689999999986888751001388999999986 Q ss_pred HHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-----CCCCCEEECCCCCCCCCEEEEEE-CCE-EE--EEE Q ss_conf 521-433111688543446874488711588999998400-----13340021053445682699998-998-86--321 Q gi|254780696|r 155 EMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY-----PEPLMIQSYLPQIRDGDKRILLL-NGK-PV--GAV 224 (316) Q Consensus 155 ~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~-----~~~ii~Qefi~~~~~gD~Rv~vi-~g~-~v--~a~ 224 (316) +++ |+|+||...++|+||+.+. +.......++.+.... ...++++||+.. -++-++.+ ||+ ++ ... T Consensus 156 ~~~~P~VIK~dgla~GKGV~i~~-~~~ea~~~~~~~~~~~~~g~~~~~vvIEE~l~G---~E~S~~a~~dg~~~~~lp~~ 231 (442) T 3lp8_A 156 KHKLPLVVKADGLAQGKGTVICH-THEEAYNAVDAMLVHHKFGEAGCAIIIEEFLEG---KEISFFTLVDGSNPVILGVA 231 (442) T ss_dssp HSCSSEEEEESSCCTTTSEEEES-SHHHHHHHHHHHHTSCTTGGGGSSEEEEECCCS---EEEEEEEEEESSCEEEEEEE T ss_pred HCCCCEEEECCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC---CEEEEEEEECCCEEEECCCH T ss_conf 07997899747667897599975-768999999987531212246761897521487---16778999738906968637 Q ss_pred ---EEECCCCCCCCCCCCCCCEEEE--E-CCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEECC Q ss_conf ---2204568600000014731110--0-77899-----999999999999849879999---511----7878898368 Q gi|254780696|r 225 ---NRIPSEVDNRSNIHAGGKAELT--K-LTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINVT 286 (316) Q Consensus 225 ---~R~~~~~~~r~Nl~~Gg~~~~~--~-lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNvt 286 (316) .|. -++|. -...||-..-+ . ++++. .++...+.+.|+..|+.|.|+ .++ |+||+|.|+- T Consensus 232 qD~Kr~-~d~d~--GpnTGGMGa~sp~p~~~~~~~~~i~~~i~~p~~~~l~~~g~~y~GvLy~glmlt~~gp~viE~N~R 308 (442) T 3lp8_A 232 QDYKTI-GDNNK--GPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNEPKLLEYNVR 308 (442) T ss_dssp EECCEE-EGGGE--EEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEESS T ss_pred HHCCCC-CCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEE T ss_conf 751023-58999--998898766678753448888898887426278999866993598875479996897169987422 Q ss_pred --CCHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf --83037889975199989999999988 Q gi|254780696|r 287 --SPTCIREIHRNGGENVASLFWDGIEK 312 (316) Q Consensus 287 --sP~g~~~~~~~~~~~i~~~i~d~ie~ 312 (316) .| ..+-+-.+...|+...+...+.. T Consensus 309 fGDP-E~q~ll~~l~sdl~~~~~~~~~~ 335 (442) T 3lp8_A 309 FGDP-ETQSILPRLNSDFLKLLSLTAKG 335 (442) T ss_dssp CCTT-HHHHHGGGBCSCHHHHHHHHHHT T ss_pred ECCC-CCEEEECCCCCCHHHHHHHHHCC T ss_conf 0798-55045303688699999998516 No 33 >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Probab=99.05 E-value=6.8e-09 Score=77.25 Aligned_cols=237 Identities=14% Similarity=0.178 Sum_probs=128.9 Q ss_pred CCHHHHHHHHHHCCCEEEEE-EHHHEEEE-----CCEEEEEEEEEEEECCCCCEEEECCCC-CCCHHHCCEEEEECCCCC Q ss_conf 46799999999889889999-54124899-----989999999999807774126504644-352100636688328862 Q gi|254780696|r 22 DSTFAIALEAQVRGYQIFHY-TPDQLYMR-----DSKIYANTQPLSLDEKKEQYYSLGEEK-IIDLSQMDVILIRQDPPF 94 (316) Q Consensus 22 DTT~~Lm~eAq~RGheV~~~-~~~dL~~~-----~g~v~A~~~~i~i~~~~~~~f~~~~~~-~~~L~~fD~i~iR~dPp~ 94 (316) .|.+.++++|.+.|++.-.+ +.++-... -++++. .+. +....... .-.+...|+++ ||+ T Consensus 27 hSa~~i~~~ake~G~~TV~V~~~~~~~~~~~~~~aDe~~~-------~~~---~~~~~~~~~~~~~~~~~ai~----~~~ 92 (361) T 2r7k_A 27 HTSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIY-------VDN---FSDIKNEEIQEKLRELNSIV----VPH 92 (361) T ss_dssp TTHHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEE-------CSS---GGGGGSHHHHHHHHHTTEEE----CCB T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEE-------CCC---HHHHHHHHHHHHHCCCCCEE----CCC T ss_conf 8999999999983997999964886422578153988898-------687---16678999998754689257----881 Q ss_pred C--HHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCC Q ss_conf 2--4799999999862358504117488752565034334543----0443100037245568888521-4331116885 Q gi|254780696|r 95 N--MHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGN 167 (316) Q Consensus 95 d--~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~ 167 (316) - ..+.....+++. .++.++.+|.+++.+.||...-++.+ ++|+.. . +.++.+ |+++||.+|. T Consensus 93 G~lse~~~~~~~~~~--~~i~~~G~~~~i~~~~dk~~~k~~l~~~gip~p~~~--~-------~~~~ig~PvivKp~~~~ 161 (361) T 2r7k_A 93 GSFIAYCGLDNVENS--FLVPMFGNRRILRWESERSLEGKLLREAGLRVPKKY--E-------SPEDIDGTVIVKFPGAR 161 (361) T ss_dssp HHHHHHHCHHHHHHT--CCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCEE--S-------SGGGCCSCEEEECSCCC T ss_pred CHHHHHHHHHHHHHH--CCCEEECCHHHHHHHHCHHHHHHHHHHCCCCCCHHH--H-------HHHHCCCCEEEEECCCC T ss_conf 338761333568997--898498989999987789999999997499983555--4-------55406777899975678 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHC------CCCCCEEECCCCCC----------CCCEEEEEEC-CEE--EEEEEEEC Q ss_conf 43446874488711588999998400------13340021053445----------6826999989-988--63212204 Q gi|254780696|r 168 GGTGVFRITLGDRNFSSLIEMLFEKY------PEPLMIQSYLPQIR----------DGDKRILLLN-GKP--VGAVNRIP 228 (316) Q Consensus 168 ~G~gV~~i~~~~~~~~~~~e~~~~~~------~~~ii~Qefi~~~~----------~gD~Rv~vi~-g~~--v~a~~R~~ 228 (316) ||+|++.+. +...+...++...... ..++++|+|+.... +.++.++..+ |.. +.++.+.+ T Consensus 162 Gg~G~~iv~-~~~el~~~~~~~~~~~~~~~~~~~~~lieefi~G~~~~~~~~~~~~~~e~ev~~~~~g~~~~i~~~~~~~ 240 (361) T 2r7k_A 162 GGRGYFIAS-STEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIP 240 (361) T ss_dssp C---EEEES-SHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSC T ss_pred CCCEEEEEC-CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCEEECCEEECC T ss_conf 980389978-9999999999999863422463167899870478456654204664214799775368700445367315 Q ss_pred CCCCCCCCCCCCCCE---EEEECCH----HHHHHHHHHHHHHHHC---CC-EEEEEEEE----CC-EEEEEE Q ss_conf 568600000014731---1100778----9999999999999984---98-79999511----78-788983 Q gi|254780696|r 229 SEVDNRSNIHAGGKA---ELTKLTK----IDLDICKRIGESLRER---GL-FFTGIDVI----GD-YITEIN 284 (316) Q Consensus 229 ~~~~~r~Nl~~Gg~~---~~~~lt~----~~~~i~~~~~~~L~~~---gl-~~~GiDii----g~-~i~EvN 284 (316) .+..-+...+.|=.. -+..+++ +.++++.++++.++.. |+ -.++|+++ |+ |++||| T Consensus 241 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~i~~al~~~~~~g~~G~~~vef~vd~dg~~y~iEvN 312 (361) T 2r7k_A 241 AKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMS 312 (361) T ss_dssp HHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEE T ss_pred HHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEEE T ss_conf 564440687567450436884469999999999999999997653368735047799999699979999987 No 34 >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A Probab=99.03 E-value=1.8e-08 Score=74.45 Aligned_cols=217 Identities=16% Similarity=0.131 Sum_probs=123.0 Q ss_pred HHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCC------------- Q ss_conf 006366883288-622479999999986235850-4117488752565034334543-----04431------------- Q gi|254780696|r 81 SQMDVILIRQDP-PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPT------------- 140 (316) Q Consensus 81 ~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T------------- 140 (316) ...|+|++-=.- .-|..+-. .++. .|.. +-=+|.+|+.+.||..+-++.. .+|-| T Consensus 122 ~~~daIhPGyGflsEna~fA~---~~~~--~Gi~fIGPs~~~i~~~gDK~~ar~~a~~~gVPvvPgs~~~~~~~~~~~~~ 196 (540) T 3glk_A 122 IPVQAVWAGWGHASENPKLPE---LLCK--NGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL 196 (540) T ss_dssp TTCSEEECCSSGGGGCTHHHH---HHHH--TTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC T ss_pred HCCCEEECCCCCCCCCHHHHH---HHHH--CCCEEECCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH T ss_conf 793999828743143999999---9998--69989997999999871848789999983899479888765411000123 Q ss_pred ---------------EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-HHHCCCCCCEEECC Q ss_conf ---------------00037245568888521-43311168854344687448871158899999-84001334002105 Q gi|254780696|r 141 ---------------LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-FEKYPEPLMIQSYL 203 (316) Q Consensus 141 ---------------~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-~~~~~~~ii~Qefi 203 (316) -..++.+++.++.++.| |+++||.+|.||+|+..+. +...+...++.. ...+..++++++|+ T Consensus 197 ~~~~~~~~~~~~~~~~~v~s~eEa~~~A~~IGyPv~iKps~ggGGrGm~iv~-~~~el~~a~~~A~~~~~~~~v~vEk~i 275 (540) T 3glk_A 197 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAE-SAEDFPILFRQVQSEIPGSPIFLMKLA 275 (540) T ss_dssp ----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEEC-STTTHHHHHHHHHHHSTTCCEEEEECC T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 3221013432223334348999999999855998899965779974348827-999999989999841888857999964 Q ss_pred CCCCCCCEEEEEE-CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEE-EEEEE- Q ss_conf 3445682699998-9988632122045686000000147311100778999----999999999998498799-99511- Q gi|254780696|r 204 PQIRDGDKRILLL-NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFT-GIDVI- 276 (316) Q Consensus 204 ~~~~~gD~Rv~vi-~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~-GiDii- 276 (316) +...+-++-++-- .|.+++...|.-+-. .|.. ..-..+-...|+++.+ +.+.++++.| |+.-+ -|.++ T Consensus 276 ~~~rhiEvqvl~D~~Gn~i~l~erdcsiq-rr~q-k~ie~aP~~~l~~~~r~~l~~~A~~la~al---gy~g~gtvEflv 350 (540) T 3glk_A 276 QHARHLEVQILADQYGNAVSLFGRDCSIQ-RRHQ-KIVEEAPATIAPLAIFEFMEQCAIRLAKTV---GYVSAGTVEYLY 350 (540) T ss_dssp SSEEEEEEEEEECTTSCEEEEEEEEEEEC----C-CSEEEESCTTSCHHHHHHHHHHHHHHHHHH---TCCEEEEEEEEE T ss_pred CCCCCCEEEEEEECCCCEEEEEEEEECCC-CCCC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCEEEEEE T ss_conf 27754247999975898899972360456-6788-961780796560899999999999999976---952664699978 Q ss_pred ---CC-EEEEEECCCCHH-HHHHHHHCCCCHHHHHHHH Q ss_conf ---78-788983688303-7889975199989999999 Q gi|254780696|r 277 ---GD-YITEINVTSPTC-IREIHRNGGENVASLFWDG 309 (316) Q Consensus 277 ---g~-~i~EvNvtsP~g-~~~~~~~~~~~i~~~i~d~ 309 (316) |. |++|+| +-..+ -.=.+.+||+|+.+.-+.. T Consensus 351 ~~dg~~yfiEvN-pRlqveh~vte~vTGvDLv~~qi~i 387 (540) T 3glk_A 351 SQDGSFHFLELN-PRLQVEHPCTEMIADVNLPAAQLQI 387 (540) T ss_dssp ETTSCEEEEEEE-CSCCTTHHHHHHHHTCCHHHHHHHH T ss_pred CCCCCEEEEEEE-CCCCCCCCEEEEEECCCHHHHHHHH T ss_conf 389989999866-8877776315546598799999998 No 35 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=99.03 E-value=3.9e-09 Score=78.87 Aligned_cols=281 Identities=15% Similarity=0.175 Sum_probs=162.1 Q ss_pred CCEEEEEECCHHHCCCC---CCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH Q ss_conf 33189970998884847---646799999999889889999541248999899999999998077741265046443521 Q gi|254780696|r 4 IRNIAIQMNHISTVKVK---EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~---~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316) ++||+++.-=.-.+--. -.|....++++++.|+++-..+++--++.-..-.|.. +-+.+-...+ + .+.+.- T Consensus 7 ikKVLIiGsG~i~IGqa~EfDys~~qai~alke~Gi~tVlVnsNpati~td~~~AD~--vYiePlt~e~--i--~~Ii~~ 80 (1073) T 1a9x_A 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADA--TYIEPIHWEV--V--RKIIEK 80 (1073) T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSE--EECSCCCHHH--H--HHHHHH T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCE--EEECCCCHHH--H--HHHHHH T ss_conf 888999888802313010137789999999998799899985884462488441506--7987899999--9--999998 Q ss_pred HHCCEEEEECCCCCC-HHHHHHHHHHHHH---C-CCCEEE-CCHHHHHHCCCHHHHHHHH----HHCCCCEEECCHHHHH Q ss_conf 006366883288622-4799999999862---3-585041-1748875256503433454----3044310003724556 Q gi|254780696|r 81 SQMDVILIRQDPPFN-MHYITSTYLLEKI---N-PETLIV-NNPFWIRNSPEKIFVTEFS----ELMPPTLISRDITQIT 150 (316) Q Consensus 81 ~~fD~i~iR~dPp~d-~~yi~~~~~Le~~---~-~~~~vi-N~p~~i~~~~eKl~~~~~~----~~~P~T~vt~~~~~~~ 150 (316) ..-|+|++- |- +..++...-|+.. + .++.+| =+|++|+...||-..-++. .++|+..+.++.+++. T Consensus 81 e~pDaI~p~----~GgqtaLnl~~~L~e~gil~~~gI~~iGps~~~I~~~~Dr~~~r~~m~~~gvPv~~s~~v~s~eea~ 156 (1073) T 1a9x_A 81 ERPDAVLPT----MGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEAL 156 (1073) T ss_dssp HCCSEEECS----SSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSHHHHH T ss_pred HCCCEEEEC----CCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEECCHHHHH T ss_conf 589999988----8784789999999975967877988988999999972599999999997799989972208999999 Q ss_pred HHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH-HHCCCCCCEEECCCCCCCCCEEEEEE---CCEE--EEE Q ss_conf 8888521-433111688543446874488711588999998-40013340021053445682699998---9988--632 Q gi|254780696|r 151 RFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLF-EKYPEPLMIQSYLPQIRDGDKRILLL---NGKP--VGA 223 (316) Q Consensus 151 ~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~-~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~--v~a 223 (316) ++.++.| ||++||.+|.||+|...+ .++..+...++... ..+..++++.+||...+ .+=+-|+ .|.. +|. T Consensus 157 ~~A~~IGyPViIrps~~~GG~Gm~iv-~~~~eL~~~~~~a~~~s~~~~vliEk~i~g~k--eIEvqVlrD~~gn~i~v~~ 233 (1073) T 1a9x_A 157 AVAADVGFPCIIRPSFTMGGSGGGIA-YNREEFEEICARGLDLSPTKELLIDESLIGWK--EYEMEVVRDKNDNCIIVCS 233 (1073) T ss_dssp HHHHHHCSSEEEEETTCCTTTTCEEE-SSHHHHHHHHHHHHHHCTTSCEEEEECCTTSE--EEEEEEEECTTCCEEEEEE T ss_pred HHHHHCCCCEEEEECCCCCCCCCCEE-CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCE--EEEEEEEECCCCCEEEEEE T ss_conf 99986599889997877899876077-79999999999999738998679998517855--8999998717998899941 Q ss_pred EEEECCCCCCCCCCCCCCCEE---EEECCHHHH----HHHHHHHHHHHHCCCEEEE--EEEE-----CC-EEEEEECCCC Q ss_conf 122045686000000147311---100778999----9999999999984987999--9511-----78-7889836883 Q gi|254780696|r 224 VNRIPSEVDNRSNIHAGGKAE---LTKLTKIDL----DICKRIGESLRERGLFFTG--IDVI-----GD-YITEINVTSP 288 (316) Q Consensus 224 ~~R~~~~~~~r~Nl~~Gg~~~---~~~lt~~~~----~i~~~~~~~L~~~gl~~~G--iDii-----g~-~i~EvNvtsP 288 (316) +.+.-+-|. |.|=+.+ ...|+++++ +.|.++++.+ |+.-+| |-+. +. |++|+| | T Consensus 234 ~E~~d~~Gi-----htgdsI~vaPa~tL~d~~~q~lr~aA~kia~~l---~~~~gg~nVqFa~d~~~~~~y~iEvN---p 302 (1073) T 1a9x_A 234 IENFDAMGI-----HTGDSITVAPAQTLTDKEYQIMRNASMAVLREI---GVETGGSNVQFAVNPKNGRLIVIEMN---P 302 (1073) T ss_dssp EEESSCTTS-----CGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHH---TCCSEEEEEEEEECTTTCCEEEEEEE---S T ss_pred CHHHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCCEEEEEECCCCCCEEEEEEC---C T ss_conf 011334202-----246604881276389999999999999999974---94336633699874899958999823---5 Q ss_pred HHHHH---HHHHCCCCHHHHHHH Q ss_conf 03788---997519998999999 Q gi|254780696|r 289 TCIRE---IHRNGGENVASLFWD 308 (316) Q Consensus 289 ~g~~~---~~~~~~~~i~~~i~d 308 (316) ---++ .+.+||.+++..-+. T Consensus 303 R~srs~~vaskaTG~pia~v~ak 325 (1073) T 1a9x_A 303 RVSRSSALASKATGFPIAKVAAK 325 (1073) T ss_dssp SCCHHHHHHHHHHSCCHHHHHHH T ss_pred CCCCHHHHHHHHCCCCHHHHHHH T ss_conf 31101444456408868999999 No 36 >3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Probab=99.01 E-value=5.4e-08 Score=71.38 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=123.5 Q ss_pred HHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCEE-ECCHHHHHHCCCHHHHHHHHH-----HCCCC------------- Q ss_conf 006366883288-6224799999999862358504-117488752565034334543-----04431------------- Q gi|254780696|r 81 SQMDVILIRQDP-PFNMHYITSTYLLEKINPETLI-VNNPFWIRNSPEKIFVTEFSE-----LMPPT------------- 140 (316) Q Consensus 81 ~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~v-iN~p~~i~~~~eKl~~~~~~~-----~~P~T------------- 140 (316) ...|+|++-=.- .-|..+- ..++. .|..+ -=+|.+|+.+.||..+-++.. .+|-| T Consensus 138 ~~~daIhPGyGflSEna~fA---~~~~~--~Gi~fIGPs~~~i~~~GDK~~ar~la~~agVPvvPgs~~~~~~~~~~~~~ 212 (587) T 3jrx_A 138 IPVQAVWAGWGHASENPKLP---ELLCK--NGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDL 212 (587) T ss_dssp TTCSEEECCSSTTTTCTHHH---HHHHT--TTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC----- T ss_pred HCCCEEECCCCCCCCCHHHH---HHHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 69199975866445599999---99998--78979995999999863979999999980899479888766521110134 Q ss_pred ---------------EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-HHHCCCCCCEEECC Q ss_conf ---------------00037245568888521-43311168854344687448871158899999-84001334002105 Q gi|254780696|r 141 ---------------LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-FEKYPEPLMIQSYL 203 (316) Q Consensus 141 ---------------~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-~~~~~~~ii~Qefi 203 (316) -..++.+++.++.++.| ||++||.+|.||+|+.++.. ..++...++.. ...+..++++.+|+ T Consensus 213 ~~~~~~~~~~~~~~~g~v~s~eEa~~~A~~IGyPVmVKps~ggGGrGmriv~~-~eel~~a~~~A~~~~~~~~vliEk~i 291 (587) T 3jrx_A 213 QQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAES-AEDFPILFRQVQSEIPGSPIFLMKLA 291 (587) T ss_dssp -CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECS-TTTHHHHHHHHHHHSTTCCEEEEECC T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 43210134322233343489999999998549988999667789843378368-58999999999841888856999840 Q ss_pred CCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEE-EEEE Q ss_conf 3445682699998---9988632122045686000000147311100778999----999999999998498799-9951 Q gi|254780696|r 204 PQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFT-GIDV 275 (316) Q Consensus 204 ~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~-GiDi 275 (316) +...+ +-|-++ .|.++....|.-+- =|.+-.....+-...++++.+ +.+.+++..+ |..-+ -|.+ T Consensus 292 ~~~rh--iEVqvl~D~~G~~i~l~erdcsi--qrr~qk~ieeaPa~~l~~~~r~~m~~~a~~la~al---gy~g~gtvEf 364 (587) T 3jrx_A 292 QHARH--LEVQILADQYGNAVSLFGRDCSI--QRRHQKIVEEAPATIAPLAIFEFMEQCAIRLAKTV---GYVSAGTVEY 364 (587) T ss_dssp CSCEE--EEEEEEECSSSCEEEEEEEEEEE--ESSSCEEEEEESCCSSCHHHHHHHHHHHHHHHHHH---TCCEEEEEEE T ss_pred HHHHH--CCEEEEEECCCCEEEEEEEECCC--CCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCEEEE T ss_conf 12210--20257872589489997135365--55688874234787563889988999999999975---9756756899 Q ss_pred E----CC-EEEEEE----CCCCHHHHHHHHHCCCCHHHHHHHH Q ss_conf 1----78-788983----6883037889975199989999999 Q gi|254780696|r 276 I----GD-YITEIN----VTSPTCIREIHRNGGENVASLFWDG 309 (316) Q Consensus 276 i----g~-~i~EvN----vtsP~g~~~~~~~~~~~i~~~i~d~ 309 (316) + |. |++|+| ++.| =.+.+||+|+.+.-+.. T Consensus 365 lv~~dg~~yfiEvNpRlqvehp----vte~vTGvDLV~~qi~i 403 (587) T 3jrx_A 365 LYSQDGSFHFLELNPRLQVEHP----CTEMIADVNLPAAQLQI 403 (587) T ss_dssp EECSSSCEEEEEEESSCCTTHH----HHHHHHTCCHHHHHHHH T ss_pred EECCCCCEEEEEECCCCCCCCH----HHHHHCCCCHHHHHHHH T ss_conf 8879996899994177566621----47765199889999998 No 37 >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Probab=99.01 E-value=6.7e-08 Score=70.75 Aligned_cols=269 Identities=11% Similarity=0.065 Sum_probs=143.5 Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC---HH Q ss_conf 318997099888484764679999999988988999954124899989999999999807774126504644352---10 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID---LS 81 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~---L~ 81 (316) .||+++..-- --..+++||++.|+++..++++.=.- +.-.|.- .+..+... ...... .. T Consensus 12 ~kvlIiG~Gq--------lgr~~a~Aak~lG~~v~~~~~~~~~p--~~~~ad~-~~~~~~~D-------~e~l~~~a~~~ 73 (391) T 1kjq_A 12 TRVMLLGSGE--------LGKEVAIECQRLGVEVIAVDRYADAP--AMHVAHR-SHVINMLD-------GDALRRVVELE 73 (391) T ss_dssp CEEEEESCSH--------HHHHHHHHHHTTTCEEEEEESSTTCG--GGGGSSE-EEECCTTC-------HHHHHHHHHHH T ss_pred CEEEEECCCH--------HHHHHHHHHHHCCCEEEEEECCCCCC--HHHHCCE-EEEECCCC-------HHHHHHHHHHH T ss_conf 8999989789--------99999999998799899997999983--6762663-69836889-------99999999984 Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECC-HHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH Q ss_conf 063668832886224799999999862358504117-488752565034334543----044310003724556888852 Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNN-PFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM 156 (316) Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~-p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~ 156 (316) ..|+|..=.+.+ ... ....++. .+..++.. +.+++...+|.+.-.|.+ ++|+.....+.+++.+++++. T Consensus 74 ~~d~v~~~~e~~-~~~---~~~~~~~--~g~~~~~p~~~~~~~~~~k~~~k~~~~~~~ipt~~~~~~~~~~e~~~~~~~~ 147 (391) T 1kjq_A 74 KPHYIVPEIEAI-ATD---MLIQLEE--EGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADI 147 (391) T ss_dssp CCSEEEECSSCS-CHH---HHHHHHH--TTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHH T ss_pred CCCEEEECCCCH-HHH---HHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 999999277745-689---9999996--5971079819999987618999876651588840134669999999999872 Q ss_pred H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH---HCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECC Q ss_conf 1-4331116885434468744887115889999984---0013340021053445682699998---9988632122045 Q gi|254780696|r 157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE---KYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPS 229 (316) Q Consensus 157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~---~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~ 229 (316) + |+|+||..+++|+|++++... ..+...++.... .+...++++++++... ..-++++ +|..+...... T Consensus 148 ~~PvviK~~~~~gg~gv~~v~~~-~~~~~a~~~a~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~g~~~~~~~~~-- 222 (391) T 1kjq_A 148 GYPCIVKPVMSSSGKGQTFIRSA-EQLAQAWKYAQQGGRAGAGRVIVEGVVKFDF--EITLLTVSAVDGVHFCAPVGH-- 222 (391) T ss_dssp CSSEEEEESCC---CCCEEECSG-GGHHHHHHHHHHHSGGGCCCEEEEECCCCSE--EEEEEEEEETTEEEECCCEEE-- T ss_pred CCCCEEEEEECCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCCEEEEEEECCE--EEEEEEEECCCCCEEECCCCC-- T ss_conf 88724543203688854997688-8999999998875225887614899972222--468877861688789444001-- Q ss_pred CCCCCCCCCCCCCEEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHH--HHHHHHHCC Q ss_conf 68600000014731110077899----999999999999849879999511----78788983688303--788997519 Q gi|254780696|r 230 EVDNRSNIHAGGKAELTKLTKID----LDICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTC--IREIHRNGG 299 (316) Q Consensus 230 ~~~~r~Nl~~Gg~~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g--~~~~~~~~~ 299 (316) ....+. ..+...+..++++. ++++.+++..|...|+. .++++ |.|++|+|. -|++ ... ...++ T Consensus 223 --~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~G~~--~ie~~v~~~~~~v~Ei~~-R~~~~~~~~-~~~~~ 295 (391) T 1kjq_A 223 --RQEDGD-YRESWQPQQMSPLALERAQEIARKVVLALGGYGLF--GVELFVCGDEVIFSEVSP-RPHDTGMVT-LISQD 295 (391) T ss_dssp --EEETTE-EEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEE--EEEEEEETTEEEEEEEES-SCCGGGGGH-HHHBS T ss_pred --CCCCCC-CCEEECCCCCCHHHHHHHHHHHHHHHHHEEECCCC--CEEEEEECCCEEEEEECC-CCCCCEEEE-EECCC T ss_conf --011785-22451785446899999999976544540615753--126788438379999868-875760366-52027 Q ss_pred CCHHHHHHHH Q ss_conf 9989999999 Q gi|254780696|r 300 ENVASLFWDG 309 (316) Q Consensus 300 ~~i~~~i~d~ 309 (316) .+.....+.. T Consensus 296 ~~~~~~~~~~ 305 (391) T 1kjq_A 296 LSEFALHVRA 305 (391) T ss_dssp SCHHHHHHHH T ss_pred CCHHHHHHHH T ss_conf 4299999998 No 38 >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Probab=98.99 E-value=7.6e-08 Score=70.40 Aligned_cols=276 Identities=19% Similarity=0.242 Sum_probs=150.5 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCE----------EEEEEHHHE-----EEE-CCEEEEEEEEEEEECCC Q ss_conf 53318997099888484764679999999988988----------999954124-----899-98999999999980777 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQ----------IFHYTPDQL-----YMR-DSKIYANTQPLSLDEKK 66 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGhe----------V~~~~~~dL-----~~~-~g~v~A~~~~i~i~~~~ 66 (316) +++||++- | ..---++++++|++.|++ |-++...|. +++ ..+.+ .+.... T Consensus 46 ~~~kvLiA-N-------RGEiA~Riira~~elgi~t~~~~~~~~~v~v~~~~d~d~~~~hv~~ADe~~------~i~~~~ 111 (554) T 1w96_A 46 VISKILIA-N-------NGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYI------EVPGGT 111 (554) T ss_dssp CCCEEEEC-C-------CHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEE------ECCCSS T ss_pred CCCEEEEE-C-------CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCEEE------ECCCCC T ss_conf 64458886-5-------869999999999981750014557753389983563457870387498899------758997 Q ss_pred --CCEEEECCCCCC---CHHHCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH---- Q ss_conf --412650464435---210063668832886-22479999999986235850-4117488752565034334543---- Q gi|254780696|r 67 --EQYYSLGEEKII---DLSQMDVILIRQDPP-FNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE---- 135 (316) Q Consensus 67 --~~~f~~~~~~~~---~L~~fD~i~iR~dPp-~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~---- 135 (316) +.+... ...+ .....|+|++=-..- -|..+-. .++.++.|.. +-=+|.+|+.+.||..+-++.. T Consensus 112 ~~~sYl~i--~~Ii~~A~~~~~daihPGyGFLSEn~~fA~---~~~~a~~gi~fIGPs~~~i~~~gdK~~ar~la~~~GV 186 (554) T 1w96_A 112 NNNNYANV--DLIVDIAERADVDAVWAGWGHASENPLLPE---KLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKV 186 (554) T ss_dssp GGGTTTCH--HHHHHHHHHTTCSEEECCSSTTTTCTHHHH---HHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTC T ss_pred HHCCCCCH--HHHHHHHHHHCCCEEEECCCCCCCCHHHHH---HHHHHCCCCEEECCCHHHHHHHHCHHHHHHHHHHHCC T ss_conf 01011499--999999999496999818740203999999---9997069959989699999976479999999998399 Q ss_pred H-CCCC-------------------------EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHH Q ss_conf 0-4431-------------------------00037245568888521-4331116885434468744887115889999 Q gi|254780696|r 136 L-MPPT-------------------------LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEM 188 (316) Q Consensus 136 ~-~P~T-------------------------~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~ 188 (316) + +|-| -..+|.+++.++.++.| ||++||.+|.||+|+..+. ++..+...++. T Consensus 187 PviPgs~~~i~~~~~~~~~~~~~~~~~~~~~g~~~s~eea~~~A~~IGyPVivKps~ggGGrGm~iv~-~~~el~~a~~~ 265 (554) T 1w96_A 187 PCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVE-REEDFIALYHQ 265 (554) T ss_dssp CBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEEC-SHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEC-CHHHHHHHHHH T ss_conf 94788776644101122101122321000023348999999999756987899723568873679972-74776666788 Q ss_pred H-HHHCCCCCCEEECCCCCCCCCEEEEEE-C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH----HHHHHHH Q ss_conf 9-840013340021053445682699998-9--988632122045686000000147311100778999----9999999 Q gi|254780696|r 189 L-FEKYPEPLMIQSYLPQIRDGDKRILLL-N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL----DICKRIG 260 (316) Q Consensus 189 ~-~~~~~~~ii~Qefi~~~~~gD~Rv~vi-~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~----~i~~~~~ 260 (316) . ..-+..++++.+||+...+ +-|-++ | |..++...|--.- -|.+-...-.+-...++++.+ +.+.+++ T Consensus 266 a~~~~~~~~vliEk~l~~~rh--iEVqvi~D~~G~~v~l~~rdcsi--qr~~qk~ie~aP~~~l~~~~~~~~~~~a~~la 341 (554) T 1w96_A 266 AANEIPGSPIFIMKLAGRARH--LEVQLLADQYGTNISLFGRDCSV--QRRHQKIIEEAPVTIAKAETFHEMEKAAVRLG 341 (554) T ss_dssp HHHHSTTCCEEEEECCCSCEE--EEEEEEECTTSCEEEEEEEEEEE--EETTEEEEEEESCCSSCHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCEEEEEECHHHEE--EEEEEEEECCCCEEEEECCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 886268986799982311111--12478982699889995611231--33456765457851001899999999999999 Q ss_pred HHHHHCCCEEEE-EEEE----CC--EEEEEE----CCCCHHHHHHHHHCCCCHHHHHHHH Q ss_conf 999984987999-9511----78--788983----6883037889975199989999999 Q gi|254780696|r 261 ESLRERGLFFTG-IDVI----GD--YITEIN----VTSPTCIREIHRNGGENVASLFWDG 309 (316) Q Consensus 261 ~~L~~~gl~~~G-iDii----g~--~i~EvN----vtsP~g~~~~~~~~~~~i~~~i~d~ 309 (316) +.+ |+.=+| +.++ ++ |++|+| ++.| =.+.+||+|+.+.-+.. T Consensus 342 ~~l---gy~g~Gtvefl~~~~~~~~YfiEvNpR~qvehp----vte~vTGvdLV~~qi~i 394 (554) T 1w96_A 342 KLV---GYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHP----TTEMVSGVNLPAAQLQI 394 (554) T ss_dssp HHH---TCCEEEEEEEEECTTTCCEEEEEEECSCCTTTH----HHHHHHCCCHHHHHHHH T ss_pred HHC---CCEECCEEEEEEECCCCCEEEEEECCCCCCCCC----HHHHHHCCCHHHHHHHH T ss_conf 975---961232245776078994778860465455410----01276597899999999 No 39 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=98.98 E-value=1.9e-08 Score=74.40 Aligned_cols=218 Identities=16% Similarity=0.227 Sum_probs=133.9 Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH Q ss_conf 00636688328862247999999998623585041-17488752565034334543----04431000372455688885 Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE 155 (316) Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~ 155 (316) .+.|.|++=-.-|.. .++. -.|+. .+..|+ .+..+.+.-.+|.++-+|.+ ++|+..+..+.+++.+|+++ T Consensus 87 ~~iDlvivGpE~pL~-~Gl~--D~l~~--~gi~vfGps~~aa~lE~sK~f~k~~m~~~~Ipta~~~~~~~~~ea~~~i~~ 161 (452) T 2qk4_A 87 KKIEFVVVGPEAPLA-AGIV--GNLRS--AGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILS 161 (452) T ss_dssp HTCCEEEECSSHHHH-TTHH--HHHHH--TTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHH T ss_pred HCCCEEEECCCHHHH-HHHH--HHHHH--CCCCEECCHHHHHHHHHCHHHHHHHHHHCCCCCCHHEEEECHHHHHHHHHH T ss_conf 599999989738989-8899--99986--799443550888887747999999998517999702399468999999986 Q ss_pred HH-H-HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-----CCCCCCEEECCCCCCCCCEEEEEE-CCE-EE--EE- Q ss_conf 21-4-3311168854344687448871158899999840-----013340021053445682699998-998-86--32- Q gi|254780696|r 156 MK-D-IIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK-----YPEPLMIQSYLPQIRDGDKRILLL-NGK-PV--GA- 223 (316) Q Consensus 156 ~~-~-vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~-----~~~~ii~Qefi~~~~~gD~Rv~vi-~g~-~v--~a- 223 (316) .+ | +|+||...++|+||+... +.......++.+... ....++++||+. +-++-++.+ ||+ .+ .+ T Consensus 162 ~~~P~vVIK~dgla~GKGV~v~~-~~~ea~~~~~~~~~~~~~g~~~~~VviEe~l~---G~E~S~~a~~dg~~~~~lp~~ 237 (452) T 2qk4_A 162 ADFPALVVKASGLAAGKGVIVAK-SKEEACKAVQEIMQEKAFGAAGETIVIEELLD---GEEVSCLCFTDGKTVAPMPPA 237 (452) T ss_dssp CSSCEEEEEESBC---CCEEECS-SHHHHHHHHHHHTTC-------CCEEEEECCC---SEEEEEEEEECSSCEEECCCB T ss_pred CCCCCEEEECCCCCCCCCEEEEE-CHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC---CEEEEEEEEECCCCEECCCCH T ss_conf 69982787347657887606552-47899999998740364256797399996258---736777999869804627407 Q ss_pred --EEEECCCCCCCCCCCCCCCEEEE---ECCHHH-----HHHHHHHHHHHHHCCCEEEEE---EEE----CCEEEEEECC Q ss_conf --12204568600000014731110---077899-----999999999999849879999---511----7878898368 Q gi|254780696|r 224 --VNRIPSEVDNRSNIHAGGKAELT---KLTKID-----LDICKRIGESLRERGLFFTGI---DVI----GDYITEINVT 286 (316) Q Consensus 224 --~~R~~~~~~~r~Nl~~Gg~~~~~---~lt~~~-----~~i~~~~~~~L~~~gl~~~Gi---Dii----g~~i~EvNvt 286 (316) ..|. -+||.- ...||....+ .++++. .++.+.+.+.|+..|+.|.|+ .++ |+||+|+|+- T Consensus 238 qD~Kr~-~dgd~G--pnTGgMGa~~P~~~~~~~~~~~i~~~i~~p~i~~l~~eg~~y~G~ly~glmit~~gp~viE~N~R 314 (452) T 2qk4_A 238 QDHKRL-LEGDGG--PNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNGPKVLEFNCR 314 (452) T ss_dssp EEEEEE-ETTTEE--EEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTEEEEEEEESS T ss_pred HHHHHH-CCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEECC T ss_conf 766651-378989--98999740157821025689999998889999999865995499975005760799769999667 Q ss_pred --CCHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf --8303788997519998999999998 Q gi|254780696|r 287 --SPTCIREIHRNGGENVASLFWDGIE 311 (316) Q Consensus 287 --sP~g~~~~~~~~~~~i~~~i~d~ie 311 (316) .| ..+-+-...+.|+...+...+. T Consensus 315 fGDP-E~q~ll~~l~~dl~~l~~~~~~ 340 (452) T 2qk4_A 315 FGDP-ECQVILPLLKSDLYEVIQSTLD 340 (452) T ss_dssp CCTT-THHHHGGGBCSCHHHHHHHHHT T ss_pred CCCC-CCCEEECCCCCCHHHHHHHHHC T ss_conf 8998-5304642568869999999970 No 40 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=98.96 E-value=5.3e-08 Score=71.43 Aligned_cols=194 Identities=14% Similarity=0.230 Sum_probs=128.3 Q ss_pred CCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHH Q ss_conf 585041-17488752565034334543----0443100037245568888521-43311168854344687448871158 Q gi|254780696|r 110 PETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFS 183 (316) Q Consensus 110 ~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~ 183 (316) .|+.++ -+|++|..+-||-..-++.+ +.|+.....+.+++.+|.++.| ||++||.++-||+|...+ .+++.+. T Consensus 657 ~gi~ilGts~e~Id~aedR~~f~~ll~~lgi~~p~~~~~~s~eea~~~a~~iGyPVlvRpSyvlGG~~M~iv-~~~~eL~ 735 (1073) T 1a9x_A 657 AGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIV-YDEADLR 735 (1073) T ss_dssp TTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCSSEEEEC-------CEEEE-CSHHHHH T ss_pred CCCEEECCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEE-ECHHHHH T ss_conf 798388898467552236799999999728888887544878899999986499769741335667742799-6489999 Q ss_pred HHHHHHH-HHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCE---EEEECCHHHH----HH Q ss_conf 8999998-40013340021053445682699998998863212204568600000014731---1100778999----99 Q gi|254780696|r 184 SLIEMLF-EKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKA---ELTKLTKIDL----DI 255 (316) Q Consensus 184 ~~~e~~~-~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~---~~~~lt~~~~----~i 255 (316) ..++... .....++++.+|+.+..+=|+.++- ||+-+....+. +.==++++|.|-+. -+..|+++.+ +. T Consensus 736 ~~l~~a~~~s~~~~vlIekfl~~~~EiEvd~i~-Dg~~v~i~~i~--EhIe~aGvHsgDs~~v~P~~~Ls~~~~~~i~~~ 812 (1073) T 1a9x_A 736 RYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAIC-DGEMVLIGGIM--EHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQ 812 (1073) T ss_dssp HHHHHCC--------EEEBCCTTCEEEEEEEEE-CSSCEEEEEEE--EESSCTTSCGGGCCEEESCSSCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEC-CCCEEEEEECC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 999999964999988887615786577766212-68758994040--132347763245345079833699999999999 Q ss_pred HHHHHHHHHHCCCEEEEEEEE--CC--EEEEEECCCCHHHHHHHHHCCCCHHHHHHHH Q ss_conf 999999999849879999511--78--7889836883037889975199989999999 Q gi|254780696|r 256 CKRIGESLRERGLFFTGIDVI--GD--YITEINVTSPTCIREIHRNGGENVASLFWDG 309 (316) Q Consensus 256 ~~~~~~~L~~~gl~~~GiDii--g~--~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ 309 (316) +.++++.|.-.|+. -|-++ ++ |++|+|--+---..-...++|.|+++.-+.. T Consensus 813 a~kia~~l~i~G~~--niQF~vkd~~~yviE~NpRasrt~pf~sk~tG~~lv~~a~~i 868 (1073) T 1a9x_A 813 VQKLAFELQVRGLM--NVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARV 868 (1073) T ss_dssp HHHHHHHTTCCEEE--EEEEEECSSCEEEEEEECSCCTTHHHHHHHHSCCHHHHHHHH T ss_pred HHHHHHHCCCCCCE--EEEEEEECCEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHH T ss_conf 99999864623422--799999899999997424201220899988498799999999 No 41 >2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... Probab=98.93 E-value=2.8e-08 Score=73.24 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=149.3 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHEEEE---CCEEEEEEEEEEEECCCCCEEEECCCC- Q ss_conf 533189970998884847646799999999889889999--54124899---989999999999807774126504644- Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQLYMR---DSKIYANTQPLSLDEKKEQYYSLGEEK- 76 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL~~~---~g~v~A~~~~i~i~~~~~~~f~~~~~~- 76 (316) |++||++- | ..---++++++|++.|++.-.. +++..+.. -.++ ..+........+.....-. T Consensus 1 m~~kvLia-n-------rGeiA~riira~relGi~tVav~s~~D~~s~~v~~ADe~----~~i~~~~~~~sYld~~~Ii~ 68 (449) T 2w70_A 1 MLDKIVIA-N-------RGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADET----VCIGPAPSVKSYLNIPAIIS 68 (449) T ss_dssp CCSEEEEC-C-------CHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEE----EEEECSSGGGTTTCHHHHHH T ss_pred CCCEEEEE-C-------CCHHHHHHHHHHHHCCCCEEEECCHHHHCCCCHHHCCEE----EECCCCCHHHHHCCHHHHHH T ss_conf 96419998-9-------739999999999986993999837044158897779899----98489862420048999999 Q ss_pred CCCHHHCCEEEEECCCC-CCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCC--EEECCHH Q ss_conf 35210063668832886-22479999999986235850-4117488752565034334543----0-4431--0003724 Q gi|254780696|r 77 IIDLSQMDVILIRQDPP-FNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPT--LISRDIT 147 (316) Q Consensus 77 ~~~L~~fD~i~iR~dPp-~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T--~vt~~~~ 147 (316) ...-...|+|++=...- -+..+.. .++. .|.. +-.+|.+|+.+.||..+-.+.+ + +|-+ .++.+.+ T Consensus 69 ~a~~~g~daihpGyGflsena~fA~---~~~~--~Gi~fIGPs~~~i~~~gDK~~ar~la~~~gvp~ip~~~~~~~~~~~ 143 (449) T 2w70_A 69 AAEITGAVAIHPGYGFLSENANFAE---QVER--SGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMD 143 (449) T ss_dssp HHHHHTCCEEECCSSTTTTCHHHHH---HHHH--TTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHH T ss_pred HHHHCCCCEEECCHHHHHHCHHHHH---HHHH--CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 9988199999647416543732038---8998--8992888899999874098999999998599968987666688599 Q ss_pred HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEE-C--C Q ss_conf 5568888521-43311168854344687448871158899999-----840013340021053445682699998-9--9 Q gi|254780696|r 148 QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLL-N--G 218 (316) Q Consensus 148 ~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi-~--g 218 (316) ++.++.++.| ||++||.+|.||+|+..+. +...+.+.++.. ...+..++++.+|++...+ +-|-++ | | T Consensus 144 ea~~~a~~iGyPViIKas~ggGGrGmriv~-~~~el~~~~~~~~~ea~~~f~~~~v~iE~~l~~~rh--iEvqv~~D~~g 220 (449) T 2w70_A 144 KNRAIAKRIGYPVIIKASGGGGGRGMRVVR-GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRH--VEIQVLADGQG 220 (449) T ss_dssp HHHHHHHHHCSSEEEEETTCCTTTTCEEEC-SHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEE--EEEEEEECTTS T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH--HHEEEEECCCC T ss_conf 999999866996688521121224638986-816679999999999998469985786101047141--11467743899 Q ss_pred EEEEEEEEECCCCCCCC-CCCCCCCEEEEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE--CC--EEEEEECCCCH Q ss_conf 88632122045686000-000147311100778999----99999999999849879999511--78--78898368830 Q gi|254780696|r 219 KPVGAVNRIPSEVDNRS-NIHAGGKAELTKLTKIDL----DICKRIGESLRERGLFFTGIDVI--GD--YITEINVTSPT 289 (316) Q Consensus 219 ~~v~a~~R~~~~~~~r~-Nl~~Gg~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii--g~--~i~EvNvtsP~ 289 (316) .+++...|-- ++.. +-.....+-...++++.+ +.+.+++..+.-.|+ +-|.++ ++ |++|||-=... T Consensus 221 ~~i~l~erdc---s~qrr~qk~ieeaP~~~l~~~~~~~~~~~a~~la~~~~y~g~--~tvEfl~~~~~~yflEvN~R~qv 295 (449) T 2w70_A 221 NAIYLAERDC---SMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGA--GTFEFLFENGEFYFIEMNTRIQV 295 (449) T ss_dssp CEEEEEEEEE---EEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEE--EEEEEEEETTEEEEEEEECSCCT T ss_pred CEEEECCCCC---CCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CEEEEEEECCEEEEEECCCCCCC T ss_conf 7501246245---202333662457678879867899999999999997694054--05899998997999832146665 Q ss_pred HHHHHHHHCCCCHHHHHHH Q ss_conf 3788997519998999999 Q gi|254780696|r 290 CIREIHRNGGENVASLFWD 308 (316) Q Consensus 290 g~~~~~~~~~~~i~~~i~d 308 (316) ...=.+.+||+|+.+.-+. T Consensus 296 ehpvte~vtGvdlv~~qi~ 314 (449) T 2w70_A 296 EHPVTEMITGVDLIKEQLR 314 (449) T ss_dssp THHHHHHHHCCCHHHHHHH T ss_pred CCCEEEEECCCHHHHHHHH T ss_conf 6540110008379999999 No 42 >3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus} Probab=98.92 E-value=2.1e-09 Score=80.65 Aligned_cols=203 Identities=20% Similarity=0.223 Sum_probs=128.3 Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCC------C- Q ss_conf 679999999988988999954124899989999999999807774126504644352100636688328862------2- Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPF------N- 95 (316) Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~------d- 95 (316) ++-.+=++-..|..-+-..++.||.+.+|.++..+ .--+...|+|+=|.|--| . T Consensus 229 n~~yfEha~LAr~lG~~LVeg~DL~vrdg~v~~kt-------------------~~Gl~~VDviyRRvdd~~lDple~~~ 289 (474) T 3n6x_A 229 NSAYFEHAFIAQQMGIELVEGQDLFVRNNAVYMRT-------------------TEGPKRVDVIYRRIDDDFIDPLSFRP 289 (474) T ss_dssp STTHHHHHHHHHHHTCEEECGGGEEECSSCEEECC-------------------TTCCEEECEEEECSCGGGSCTTTSCT T ss_pred CHHHHHHHHHHHHCCCEEECCCCEEEECCEEEEEE-------------------CCCCEEEEEEEEECCCCCCCCCCCCC T ss_conf 71788899998657814753666699999899995-------------------89983999999845721135324576 Q ss_pred HHHHHHHHHHHHHCCC-CEEECCHHHHHHCCCHHHHHHHHH------------HCCCCEEECCHHHHHHHHHHHHHHHHH Q ss_conf 4799999999862358-504117488752565034334543------------044310003724556888852143311 Q gi|254780696|r 96 MHYITSTYLLEKINPE-TLIVNNPFWIRNSPEKIFVTEFSE------------LMPPTLISRDITQITRFYLEMKDIIIK 162 (316) Q Consensus 96 ~~yi~~~~~Le~~~~~-~~viN~p~~i~~~~eKl~~~~~~~------------~~P~T~vt~~~~~~~~f~~~~~~vViK 162 (316) .+.+..--+++.+..| +.++|.|.+- -..+|-....+|. ...+|+.+.++++....+++....|+| T Consensus 290 ds~lgV~GL~~a~r~G~V~iaNa~Gsg-vle~kal~aflp~~~~~~LgE~~~l~~v~T~w~~~~~~~~~Vl~~~~~lViK 368 (474) T 3n6x_A 290 DSMLGVPGLLSVYRNGGVTLANAVGTG-VADDKDTYIYVPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDNLAELVVK 368 (474) T ss_dssp TCSSSCTTHHHHHHTTSCEEESCTTTH-HHHSTTTGGGHHHHHHHHHCSCCSSEECCCEETTSHHHHHHHHHSGGGEEEE T ss_pred CCCCCCHHHHHHHHCCCEEEEECCCCC-CCCCHHHHHHHHHHHHHHCCCCHHCCCCCEECCCCHHHHHHHHHCCCCCEEE T ss_conf 540014147764105987996077744-4356579987789999855773211676423169878999998365330550 Q ss_pred CCCCCCCCCEEEECCCCC-CHHHHHHHHHHHCCCCCCEEECCCCC-----CCC-------CEEEEEECCE---EE-EEEE Q ss_conf 168854344687448871-15889999984001334002105344-----568-------2699998998---86-3212 Q gi|254780696|r 163 PLYGNGGTGVFRITLGDR-NFSSLIEMLFEKYPEPLMIQSYLPQI-----RDG-------DKRILLLNGK---PV-GAVN 225 (316) Q Consensus 163 Pl~g~~G~gV~~i~~~~~-~~~~~~e~~~~~~~~~ii~Qefi~~~-----~~g-------D~Rv~vi~g~---~v-~a~~ 225 (316) |.++++|.|+..-....+ ....+.+.+..+ ...+++|++++-. .+| |.|++++.|+ +. |++. T Consensus 369 p~~~~gg~g~~~G~~~s~~e~~~~~~~i~~~-P~~yVaQe~v~~st~P~~~~g~l~pr~v~lR~f~~~g~~~~vmpGgL~ 447 (474) T 3n6x_A 369 EVQGSGGYGMLVGPAASKQELEDFRQRILAN-PANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSLVPGALC 447 (474) T ss_dssp ECCCE-----EEGGGCCHHHHHHHHHHHHHS-GGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSSEEECSCCEE T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCEEECCEEEECEEEEEEEEEECCEEEEECCCEE T ss_conf 4677788776455538999999999999858-215796330576668768899764333368899998994699769413 Q ss_pred EECC-CCCCCCCCCCCCCEEEE Q ss_conf 2045-68600000014731110 Q gi|254780696|r 226 RIPS-EVDNRSNIHAGGKAELT 246 (316) Q Consensus 226 R~~~-~~~~r~Nl~~Gg~~~~~ 246 (316) |++. .|+...|.++||...-+ T Consensus 448 Rva~~~~~~~vn~~~Gg~sKDt 469 (474) T 3n6x_A 448 RVALREGSLVVNSSQGGGTKDT 469 (474) T ss_dssp EEECSTTCCCCSTTSSEEEECE T ss_pred EEECCCCCEEEECCCCCCCCCE T ss_conf 7226899726865899865544 No 43 >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP, structural genomics; HET: ATP; 2.50A {Thermococcus kodakarensis KOD1} SCOP: c.30.1.8 d.142.1.9 Probab=98.82 E-value=2.4e-08 Score=73.71 Aligned_cols=252 Identities=14% Similarity=0.125 Sum_probs=126.8 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE-E--HHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH Q ss_conf 33189970998884847646799999999889889999-5--41248999899999999998077741265046443521 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY-T--PDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~-~--~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316) .++|+.+ ...|.+.++++|++.|++.-.+ + |...+-.- +-.+.+|-+. ....+ T Consensus 2 ~~~i~~~---------~shsa~~i~~~Ak~~G~~Tv~i~~~~~e~~~~~~-------------~~aDe~~~~e--~~~~i 57 (320) T 2pbz_A 2 SLIVSTI---------ASHSSLQILLGAKKEGFKTRLYVSPKRRPFYSSL-------------PIVDDLVVAE--EMTSI 57 (320) T ss_dssp --CEEEE---------SSTTHHHHHHHHHHTTCCEEEEECTTTHHHHHTC-------------TTCSEEEECS--CSCCT T ss_pred CCEEEEE---------EEHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-------------CCCCEEEEHH--HHHHH T ss_conf 7289999---------7478999999999839959999778854346883-------------5287898755--69988 Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH Q ss_conf 006366883288622479999999986235-8504117488752565034334543----04431000372455688885 Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE 155 (316) Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~ 155 (316) .+-|.|++ |+-..--+. ..+.+++ ++.++-+|.+++.+.||...-++.. ++|+...... ++ T Consensus 58 ~~~~~I~~----~~g~~~~~~--~~~~le~~gi~~~G~~~~l~~~~dk~~~~~~l~~~GIp~p~~~~~~~--------~~ 123 (320) T 2pbz_A 58 LNDDGIVV----PHGSFVAYL--GIEAIEKAKARFFGNRRFLKWETTFELQDKALEGAGIPRVEVVEPED--------AK 123 (320) T ss_dssp TCCSSBCC----CBTTHHHHS--CHHHHHTCCSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBCCSCC--------CC T ss_pred HCCCEEEC----CCCCHHHHH--HHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCH--------HC T ss_conf 49998996----878678999--99999986997258689999877899999999976999765445310--------02 Q ss_pred H-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE--CC--EEEEEEEEECCC Q ss_conf 2-143311168854344687448871158899999840013340021053445682699998--99--886321220456 Q gi|254780696|r 156 M-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL--NG--KPVGAVNRIPSE 230 (316) Q Consensus 156 ~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi--~g--~~v~a~~R~~~~ 230 (316) . -||++||.+|.||+|++++.. ...+...++. ...+.+|+|+....- -...+.- .. ++++...|... T Consensus 124 ig~PViVKp~~g~GGrG~~iv~~-~eel~~~~~~-----~~~~~ie~~v~g~~~-~~~~~~~~~~~~~~i~~~~~~~~~- 195 (320) T 2pbz_A 124 PDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL-----EEPYRVERFIPGVYL-YVHFFYSPILERLELLGVDERVLI- 195 (320) T ss_dssp SSCCEEEECC------------C-EECSCCCC---------CCEEEECCCSCEE-EEEEEEETTTTEEEEEEEEEEEET- T ss_pred CCCCEEEEECCCCCCCEEEEEEC-HHHHHHHHHH-----HHHHHHHCCCCCHHE-EEEEEEEEEEECCCCEEEEECEEE- T ss_conf 68747999755788730699828-7999999999-----998876502667203-888666412404431487506688- Q ss_pred CCC--------CCCCCCCCCEEEEECCHH----HHHHHHHHHHHHHHC---CCE-EEEEEEE-CC--EEEEEECCCCHH- Q ss_conf 860--------000001473111007789----999999999999984---987-9999511-78--788983688303- Q gi|254780696|r 231 VDN--------RSNIHAGGKAELTKLTKI----DLDICKRIGESLRER---GLF-FTGIDVI-GD--YITEINVTSPTC- 290 (316) Q Consensus 231 ~~~--------r~Nl~~Gg~~~~~~lt~~----~~~i~~~~~~~L~~~---gl~-~~GiDii-g~--~i~EvNvtsP~g- 290 (316) .+. +.....|.. ++.++++ ..++++++...++.. |+. ...|.++ ++ |++|||.==++| T Consensus 196 ~~~~~~~~~~~~~~~~~~~~--p~~l~~~~~~~i~e~a~~~~~a~~~l~~~G~~G~~~vq~~~d~~~~viEinpRi~Gg~ 273 (320) T 2pbz_A 196 ADGNARWPVKPLPYTIVGNR--AIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALHFAYDGSFKAIGIASRIDGGS 273 (320) T ss_dssp TCSSSSSCCSCCCCCEEEEE--ECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEEEECSSSCEEEEEESSBCSGG T ss_pred ECCEEEECCCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC T ss_conf 87640122203564399806--9899989999999999999999755115880546899988489799999878877897 Q ss_pred ---HHHHHHHCCCCHH Q ss_conf ---7889975199989 Q gi|254780696|r 291 ---IREIHRNGGENVA 303 (316) Q Consensus 291 ---~~~~~~~~~~~i~ 303 (316) .+--+..+|.+++ T Consensus 274 ~~~~p~t~~~~g~~l~ 289 (320) T 2pbz_A 274 NADHWYSELYWGERLS 289 (320) T ss_dssp GSCCCCHHHHSSSCCC T ss_pred CCCCCCEEEEECCCCH T ss_conf 7766642106667546 No 44 >1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Probab=98.77 E-value=4.5e-07 Score=65.35 Aligned_cols=270 Identities=15% Similarity=0.201 Sum_probs=146.6 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH Q ss_conf 96533189970998884847646799999999889889999541248999899999999998077741265046443521 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316) |+. |||+++..-= ---||++..++.++++|.+. ..=.... .+.+.. -+....|. .. T Consensus 13 ~~~-~rVLviGsGg--------REHAia~~l~~s~~~v~~~p-gN~g~~~---~~~~~~----~~~~~~~~-------~~ 68 (412) T 1vkz_A 13 MKA-VRVHILGSGG--------REHAIGWAFAKQGYEVHFYP-GNAGTKR---DGTNHP----YEGEKTLK-------AI 68 (412) T ss_dssp ----CEEEEEECSH--------HHHHHHHHHHHTTCEEEEEE-CCTTGGG---TSEECC----CCTHHHHH-------TS T ss_pred HHC-CEEEEECCCH--------HHHHHHHHHHCCCCCEEEEC-CCHHHHH---HCCCCC----CCHHHHHH-------HH T ss_conf 426-7899999788--------99999999856998089968-9878874---254468----50078776-------40 Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH Q ss_conf 0063668832886224799999999862358504117488752565034334543----044310003724556888852 Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM 156 (316) Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~ 156 (316) .+.|.+++--.-|.- .++ -+... . .+--+..+.+...+|.++-+|.+ ++|+-...++.+++.+|++++ T Consensus 69 ~~~dlvvvgpE~pL~-~gl-----~d~~~-~-vfGPs~~aA~LE~SK~faK~~m~~~~IPta~~~~f~~~~ea~~~~~~~ 140 (412) T 1vkz_A 69 PEEDIVIPGSEEFLV-EGV-----SNWRS-N-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKF 140 (412) T ss_dssp CSSCEECCSSGGGTC-C----------CT-T-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTS T ss_pred CCCCEEEECCCHHHH-HHH-----HHCCC-C-EECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 479989989789999-778-----87588-7-449798999988759999999997088988511026799999998717 Q ss_pred H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCEEECCCCCCCCCEEEEEE-CC-EEE--EE---E Q ss_conf 1-43311168854344687448871158899999840----013340021053445682699998-99-886--32---1 Q gi|254780696|r 157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK----YPEPLMIQSYLPQIRDGDKRILLL-NG-KPV--GA---V 224 (316) Q Consensus 157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~----~~~~ii~Qefi~~~~~gD~Rv~vi-~g-~~v--~a---~ 224 (316) + |+|+||-...+|+||+.+...++....+.+.+... ....++++||+... +.-++++ || .++ .. + T Consensus 141 ~~PvVIKadgla~GKGV~i~~~~~ea~~~~~~~~~~~~~~~~~~~vvIEe~l~G~---E~S~~~~~dG~~~~~lp~~qD~ 217 (412) T 1vkz_A 141 SPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGN---ELSAMAVVNGRNFVILPFVRDY 217 (412) T ss_dssp CSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCCSE---EEEEEEEEETTEEEECCCCEEC T ss_pred CCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCC---EEEEEEEECCCEEEECCCCCCC T ss_conf 9978997086678886489841576899999860242026763025547555796---2379999438959989540023 Q ss_pred EEECCCCCCCCCCCCCC--CEEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECCC--CH Q ss_conf 22045686000000147--31110077899----999999999999849879999511-------78788983688--30 Q gi|254780696|r 225 NRIPSEVDNRSNIHAGG--KAELTKLTKID----LDICKRIGESLRERGLFFTGIDVI-------GDYITEINVTS--PT 289 (316) Q Consensus 225 ~R~~~~~~~r~Nl~~Gg--~~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvts--P~ 289 (316) .|. -.||-=.| .|| ...+..+...+ .++.......|.+.|+.|.|+=.+ |+||+|+|+-- |. T Consensus 218 Kr~-~dgd~Gpn--TGGMGa~sp~~~~~~~~~~~~~ii~~~~~~l~~eg~~y~GiLy~glmit~~gpkvlE~N~RfGDPE 294 (412) T 1vkz_A 218 KRL-MDGDRGPN--TGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPE 294 (412) T ss_dssp CEE-ETTTEEEE--CSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEESSCCTTH T ss_pred CCC-CCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCC T ss_conf 110-16999999--887876478775567888889999999999997499667155135587189856999633558950 Q ss_pred HHHHHHHHCCCCHHHHHHHH Q ss_conf 37889975199989999999 Q gi|254780696|r 290 CIREIHRNGGENVASLFWDG 309 (316) Q Consensus 290 g~~~~~~~~~~~i~~~i~d~ 309 (316) .+-+-.+...|+...+++. T Consensus 295 -~q~ll~ll~~dl~~~~~~~ 313 (412) T 1vkz_A 295 -TEVIVTLNPEGFVNAVLEG 313 (412) T ss_dssp -HHHHHHHCHHHHHHHHHHH T ss_pred -HHHEECCCHHHHHHHHHHH T ss_conf -4210023504679999998 No 45 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=98.77 E-value=3.3e-07 Score=66.24 Aligned_cols=280 Identities=13% Similarity=0.170 Sum_probs=154.3 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHH--CCCEEEEEEHHHEEEECCEEEEEEEEEEEECCC-CCEEEECCCCCCCH Q ss_conf 331899709988848476467999999998--898899995412489998999999999980777-41265046443521 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQV--RGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKK-EQYYSLGEEKIIDL 80 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~--RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~-~~~f~~~~~~~~~L 80 (316) .|||+++.+-=. --||++...+ +..++|++ |.+-... ..+.+..+.+.... ..-.+..+ - T Consensus 3 ~MkvLviGsGgR--------EhAia~~l~~s~~~~~v~~~-pgN~g~~---~~~~~~~~~~~~~d~~~i~~~~~-----~ 65 (431) T 3mjf_A 3 AMNILIIGNGGR--------EHALGWKAAQSPLADKIYVA-PGNAGTA---LEPTLENVDIAATDIAGLLAFAQ-----S 65 (431) T ss_dssp CEEEEEEECSHH--------HHHHHHHHTTCTTEEEEEEE-ECCHHHH---HCTTCEECCCCTTCHHHHHHHHH-----H T ss_pred CCEEEEECCCHH--------HHHHHHHHHHCCCCCEEEEE-CCCHHHH---HHCCCEEECCCCCCHHHHHHHHH-----H T ss_conf 778999897899--------99999999759898979996-8972665---30665452468669999999999-----8 Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCH-HHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH Q ss_conf 00636688328862247999999998623585041174-88752565034334543----04431000372455688885 Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNP-FWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE 155 (316) Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p-~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~ 155 (316) ...|.+++=-.-|.- .++.- .|+. .+..|+=.+ .+-+.-.+|.|+-+|-+ ++|+-...+|.+++.+|+++ T Consensus 66 ~~idlvivgpe~pL~-~Gl~D--~l~~--~gi~vfGP~~~aA~lE~sK~fak~~m~~~~IPta~~~~~~~~~~a~~~~~~ 140 (431) T 3mjf_A 66 HDIGLTIVGPEAPLV-IGVVD--AFRA--AGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQ 140 (431) T ss_dssp TTEEEEEECSHHHHH-TTHHH--HHHH--TTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHH T ss_pred CCCCEEEECCCHHHH-HHHHH--HHHH--CCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHC T ss_conf 299989989748988-77999--9974--799333877888787761999999987526588746995899999987525 Q ss_pred HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-----CCCCCCEEECCCCCCCCCEEEEEE-CCE-EEE--E-- Q ss_conf 21-43311168854344687448871158899999840-----013340021053445682699998-998-863--2-- Q gi|254780696|r 156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK-----YPEPLMIQSYLPQIRDGDKRILLL-NGK-PVG--A-- 223 (316) Q Consensus 156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~-----~~~~ii~Qefi~~~~~gD~Rv~vi-~g~-~v~--a-- 223 (316) ++ |+|+||-.-++|+||+... +.......++.+... ....+++|||+. +-++-++.+ ||+ ++. . T Consensus 141 ~~~p~VIK~dgla~GKGV~v~~-~~~ea~~a~~~~~~~~~~g~~g~~vvIEE~L~---G~E~S~~a~~dG~~~~~lp~~q 216 (431) T 3mjf_A 141 KGAPIVIKADGLAAGKGVIVAM-TQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD---GEEASFIVMVDGENVLPMATSQ 216 (431) T ss_dssp HCSSEEEEESSSCTTCSEEEEC-SHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC---SEEEEEEEEEESSCEEECCCBE T ss_pred CCCCEEEEECCCCCCCCCEEEE-CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC---CEEEEEEEEECCCEEEEEECCC T ss_conf 6987799716667877626752-11688998999875113456455576212067---5389999997799599532300 Q ss_pred -EEEECCCCCCCCCCCCCCCEEEEEC-CHHH-----HHHHHHHHHHHHHCCCEEEEEEEE-------C-CEEEEEECC-- Q ss_conf -1220456860000001473111007-7899-----999999999999849879999511-------7-878898368-- Q gi|254780696|r 224 -VNRIPSEVDNRSNIHAGGKAELTKL-TKID-----LDICKRIGESLRERGLFFTGIDVI-------G-DYITEINVT-- 286 (316) Q Consensus 224 -~~R~~~~~~~r~Nl~~Gg~~~~~~l-t~~~-----~~i~~~~~~~L~~~gl~~~GiDii-------g-~~i~EvNvt-- 286 (316) +.|. -+||.=-|.--=|...+.+. +++. .++...+.+.|++.|+.|.|+=.+ | +||+|.|+- T Consensus 217 DhKR~-~dgD~GPNTGGMGa~sp~p~~~~~l~~~i~~~ii~p~~~~l~~~g~~y~GvLy~glMlt~~G~pkViEyN~RfG 295 (431) T 3mjf_A 217 DHKRV-GDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCRFG 295 (431) T ss_dssp ECCEE-ETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTSCEEEEEECGGGS T ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEECC T ss_conf 15222-47999998898864688987898999999875001177788635995212353115883689878999873037 Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 8303788997519998999999998 Q gi|254780696|r 287 SPTCIREIHRNGGENVASLFWDGIE 311 (316) Q Consensus 287 sP~g~~~~~~~~~~~i~~~i~d~ie 311 (316) .|. .+-+--..+.|+...+.+... T Consensus 296 DPE-~q~ll~~l~~dl~e~~~~~~~ 319 (431) T 3mjf_A 296 DPE-TQPIMLRMRSDLVELCLAGTQ 319 (431) T ss_dssp TTT-HHHHHHHBCSCHHHHHHHHHT T ss_pred CCC-HHHHHHHCCCCHHHHHHHHHC T ss_conf 840-445565316748999999863 No 46 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Probab=98.74 E-value=1.1e-07 Score=69.40 Aligned_cols=192 Identities=16% Similarity=0.118 Sum_probs=116.4 Q ss_pred CCCEEE-CCHHHHHHCCCHHHHHHHHH----HCCC-C-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCC Q ss_conf 585041-17488752565034334543----0443-1-00037245568888521-433111688543446874488711 Q gi|254780696|r 110 PETLIV-NNPFWIRNSPEKIFVTEFSE----LMPP-T-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRN 181 (316) Q Consensus 110 ~~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~-T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~ 181 (316) .|..+| =+|.+|+.+.||...-++.+ +++| + -..+|.+++.++.++.| |+++||.+|.||+|+..+. +..+ T Consensus 98 ~gi~~iGP~~~~i~~~~dK~~~k~~~~~~gvp~~p~~~~~~~~~~~~~~~~~~iG~Pv~lKa~~gggGkG~~~v~-~~~~ 176 (681) T 3n6r_A 98 EGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAW-NDQE 176 (681) T ss_dssp TTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-------------------------------------------- T ss_pred CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CCHH T ss_conf 889498979999987249999999999869892989787779999999998764997899964368857227983-7035 Q ss_pred HHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHH Q ss_conf 58899999-----8400133400210534456826999989---988632122045686000000147311100778999 Q gi|254780696|r 182 FSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL 253 (316) Q Consensus 182 ~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~ 253 (316) +...++.. ...+..++++.+||+..+ .+-|-++. |..++...|..+- -|.+-..=..+-...++++.+ T Consensus 177 l~~~~~~~~~ea~~~~~~~~~~iE~~i~~~r--hievqv~~d~~G~~v~~~~r~csi--qr~~qk~ie~aPa~~~~~~~~ 252 (681) T 3n6r_A 177 AREGFQSSKNEAANSFGDDRIFIEKFVTQPR--HIEIQVLCDSHGNGIYLGERECSI--QRRNQKVVEEAPSPFLDEATR 252 (681) T ss_dssp --------------------------CCSCE--EEEEEEECCSSSCCEEEEEEECCC--EETTEECEEEESCSSCCHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCC--EEEEEEEEECCCCEEEEECCCCCC--CCCCCCEEEECCCCCCCHHHH T ss_conf 2455556788999725998689998212230--117899998789889994244765--417852699758999999999 Q ss_pred ----HHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCCH-HHHHHHHHCCCCHHHHHHHH Q ss_conf ----99999999999849879999511----7-878898368830-37889975199989999999 Q gi|254780696|r 254 ----DICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSPT-CIREIHRNGGENVASLFWDG 309 (316) Q Consensus 254 ----~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP~-g~~~~~~~~~~~i~~~i~d~ 309 (316) +.+.+++..|.-.|+. +|-++ | -|++|+| |=+. .-.=.+..+|+|+...-+.. T Consensus 253 ~~~~~~a~~~a~~~~y~g~~--tvEf~~~~~~~~~f~E~n-~R~~~~~~~te~~~~~dl~~~~~~~ 315 (681) T 3n6r_A 253 RAMGEQAVALAKAVGYASAG--TVEFIVDGQKNFYFLEMN-TRLQVEHPVTELITGVDLVEQMIRV 315 (681) T ss_dssp HHHHHHHHHHHHTTTCCSEE--EEEEEECTTSCCCCCEEE-CSCCTTHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCC--EEEEEEECCCCEEEEEEE-CCCCCCCCEEEEECCCCHHHHHHHH T ss_conf 99999999999985987544--499998069968999960-3567887457775095589999998 No 47 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=98.63 E-value=5.6e-07 Score=64.72 Aligned_cols=189 Identities=14% Similarity=0.212 Sum_probs=112.0 Q ss_pred CCEEE-CCHHHHHHCCCHHHHHHHHH----H-CCCC-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCH Q ss_conf 85041-17488752565034334543----0-4431-00037245568888521-4331116885434468744887115 Q gi|254780696|r 111 ETLIV-NNPFWIRNSPEKIFVTEFSE----L-MPPT-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNF 182 (316) Q Consensus 111 ~~~vi-N~p~~i~~~~eKl~~~~~~~----~-~P~T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~ 182 (316) |..+| =+|++|+.+.+|..+-.+.+ + +|-| -+..|.+++.++.++.| ||++|+..|.||+|+..+ .+..++ T Consensus 118 g~~figp~~~~~~~~g~k~~~r~~a~~~~vp~~~g~~~~~~~~~~~~~~~~~ig~pv~~k~~~gggg~g~~~~-~~~~~~ 196 (1165) T 2qf7_A 118 GIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVI-RSEADL 196 (1165) T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC----------------------------------------------- T ss_pred CCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEE-CCHHHH T ss_conf 9989997999999832999999999985989888978888999999999986499789997888997752697-899999 Q ss_pred HHHHHHHH-----HHCCCCCCEEECCCCCCCCCEEEEEE-C--CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHH Q ss_conf 88999998-----40013340021053445682699998-9--9886321220456860000001473111007789999 Q gi|254780696|r 183 SSLIEMLF-----EKYPEPLMIQSYLPQIRDGDKRILLL-N--GKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLD 254 (316) Q Consensus 183 ~~~~e~~~-----~~~~~~ii~Qefi~~~~~gD~Rv~vi-~--g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~ 254 (316) .+.++... ..+...+++.+||+..++ +-|-++ | |.+++-..|.-+- =|.|-..=..+-...|+++.++ T Consensus 197 ~~~~~~~~~~~~~~f~~~~v~~e~~~~~~rh--ievq~~~d~~g~~~~~~~r~cs~--q~~~qk~ie~~p~~~l~~~~~~ 272 (1165) T 2qf7_A 197 AKEVTEAKREAMAAFGKDEVYLEKLVERARH--VESQILGDTHGNVVHLFERDCSV--QRRNQKVVERAPAPYLSEAQRQ 272 (1165) T ss_dssp -----------------------CCCSSEEE--EEEEEEECTTSCEEEEEEEEEEE--EETTEEEEEEESCTTCCHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCEE--EEEEEEECCCCCEEEEECCCCCC--CCCCCEEEEECCCCCCCHHHHH T ss_conf 9999999999997269985899985288708--99999971889889971788888--7588623567779889999999 Q ss_pred ----HHHHHHHHHHHCCCE-EEEEEEE----CC--EEEEEECCCCHHHH-HHHHHCCCCHHHHHHH Q ss_conf ----999999999984987-9999511----78--78898368830378-8997519998999999 Q gi|254780696|r 255 ----ICKRIGESLRERGLF-FTGIDVI----GD--YITEINVTSPTCIR-EIHRNGGENVASLFWD 308 (316) Q Consensus 255 ----i~~~~~~~L~~~gl~-~~GiDii----g~--~i~EvNvtsP~g~~-~~~~~~~~~i~~~i~d 308 (316) .|.++++.+ |.. -..|.++ .+ |++||| |=+.-=. =-+.++|+|+.+.-+. T Consensus 273 ~~~~~a~~~~~~~---~y~~~gtvef~~~~~~~~~~f~E~n-~R~qveh~vte~~~g~dlv~~~~~ 334 (1165) T 2qf7_A 273 ELAAYSLKIAGAT---NYIGAGTVEYLMDADTGKFYFIEVN-PRIQVEHTVTEVVTGIDIVKAQIH 334 (1165) T ss_dssp HHHHHHHHHHHHT---TCCEEEEEEEEEETTTTEEEEEEEE-CSCCTTHHHHHHHHCCCHHHHHHH T ss_pred HHHHHHHHHHHHC---CCEEEEEEEEEEECCCCCEEEEEEE-CCCCCCCCCEEEEECCHHHHHHHH T ss_conf 9999999999864---9535306999998689968999966-898866532354546506899999 No 48 >2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} Probab=98.55 E-value=1.9e-06 Score=61.24 Aligned_cols=257 Identities=15% Similarity=0.101 Sum_probs=132.0 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC Q ss_conf 33189970998884847646799999999889889999541248999899999999998077741265046443521006 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM 83 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f 83 (316) ||+|+++..- --..+|+++|++.|+++.+++++.=+- +..+ ...++.... ..--.... T Consensus 1 ~~tigIlG~G--------qL~~ml~~aAk~lGi~v~v~d~~~~~p--------a~~v-----Ad~~~d~~~-l~~~a~~~ 58 (365) T 2z04_A 1 MLTVGILGGG--------QLGWMTILEGRKLGFKFHVLEDKENAP--------ACRV-----ADRCFRTGQ-ISEFVDSC 58 (365) T ss_dssp -CEEEEECCS--------HHHHHHHHHHGGGTCEEEEECSSSSCH--------HHHH-----SSEEECGGG-HHHHHHHC T ss_pred CCEEEEECCC--------HHHHHHHHHHHHCCCEEEEEECCCCCC--------HHHH-----CCHHCCHHH-HHHHHHCC T ss_conf 9899998678--------999999999997899899995699897--------6672-----615427999-99998449 Q ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHHH Q ss_conf 36688-32886224799999999862358504117488752565034334543----04431000372455688885214 Q gi|254780696|r 84 DVILI-RQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMKD 158 (316) Q Consensus 84 D~i~i-R~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~~ 158 (316) |+|-. .-+.|+ -.|+.+.. .+..+|.++..+.+|...-.+.. ..|......+.+..........+ T Consensus 59 DvIt~e~E~i~~--------~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (365) T 2z04_A 59 DIITYEFEHIKD--------EVLEKCES--KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIKRDEIIDALKSFKLP 128 (365) T ss_dssp SEEEESSSCCCH--------HHHHHHTT--TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC--------------C T ss_pred CEEEECCCCCCH--------HHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 999987046767--------99997365--77889029999888999997543039972111233256654222210566 Q ss_pred HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCC Q ss_conf 3311168854344687448871158899999840013340021053445682699998---9988632122045686000 Q gi|254780696|r 159 IIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRS 235 (316) Q Consensus 159 vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~ 235 (316) .++||..+++|.|...+............. .....++++.+|++ ....+-++++ +|++... |. +- T Consensus 129 ~i~k~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~ivEe~i~--~~~Eisv~v~rd~~g~~~~~----p~----~e 196 (365) T 2z04_A 129 VVIKAEKLGYDGKGQYRIKKLEDANQVVKN--HDKEESFIIEEFVK--FEAEISCIGVRDREGKTYFY----PQ----PF 196 (365) T ss_dssp EEEECC--------------------------------CEEEECCC--CSEEEEEEEEECTTCCEEEC----CE----EE T ss_pred CEEEEECCCCCCCCCEEEEEHHHHHHHHHH--HCCCCCEEEEEEEC--CCEEEEEEEEECCCCCEEEE----CC----CC T ss_conf 236750122128985699734566677664--03788789998414--73688899998189988984----68----35 Q ss_pred CCCCCC----CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEE-E---CC-EEEEEECCCC--HHHHHHHHHCCCCHHH Q ss_conf 000147----3111007789999999999999984987999951-1---78-7889836883--0378899751999899 Q gi|254780696|r 236 NIHAGG----KAELTKLTKIDLDICKRIGESLRERGLFFTGIDV-I---GD-YITEINVTSP--TCIREIHRNGGENVAS 304 (316) Q Consensus 236 Nl~~Gg----~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDi-i---g~-~i~EvNvtsP--~g~~~~~~~~~~~i~~ 304 (316) |.+..+ ...+....++...++.+++..+...| -.++.+ + |. |+.|+| +-| +|... ...++.+.-. T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~g--~~~~e~f~~~~~~~~vnEia-pR~hnsg~~t-~~~~~~sqfe 272 (365) T 2z04_A 197 NKHEEGILIYNYVPYAKLKEAEEITKRLMELLDIVG--VFTVEFFLLKDGRVLINEFA-PRVHNTGHWT-LDGAYTSQFE 272 (365) T ss_dssp EEEETTEEEEEEEEEECCHHHHHHHHHHHHHTTCCE--EEEEEEEECTTSCEEEEEEE-SSCCGGGTTH-HHHBSSCHHH T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCEEEEEEECCCCEEEEEEC-CCCCCEEEEE-ECCCCCCHHH T ss_conf 088667430466886888899988888787634677--51589999069829999977-8875334688-5234579999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780696|r 305 LFWD 308 (316) Q Consensus 305 ~i~d 308 (316) ..+- T Consensus 273 ~~lr 276 (365) T 2z04_A 273 NLLR 276 (365) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 49 >2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A Probab=98.04 E-value=3.3e-05 Score=53.11 Aligned_cols=200 Identities=13% Similarity=0.104 Sum_probs=99.6 Q ss_pred EEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEH-HHEEEECC-EEE-EEEEEEEEECCCCCEEEECCCCCC----- Q ss_conf 8997099888484764679999999988988999954-12489998-999-999999980777412650464435----- Q gi|254780696|r 7 IAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTP-DQLYMRDS-KIY-ANTQPLSLDEKKEQYYSLGEEKII----- 78 (316) Q Consensus 7 I~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~-~dL~~~~g-~v~-A~~~~i~i~~~~~~~f~~~~~~~~----- 78 (316) +.+++++-+.-+ .-|+..|+..|++.|++..++.+ .++.+... ..+ ...++| ...|++-..+.+ T Consensus 381 ~v~~~~~~~~ED--~~t~~yL~~~a~qAG~~t~~i~~~d~i~~d~~g~f~D~~g~~I------d~vfKlyPwE~l~~e~~ 452 (619) T 2io8_A 381 FVHIMQDKDIEE--NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLV------NCVWKTWAWETAFDQIR 452 (619) T ss_dssp EEEEEECSCHHH--HHHHHHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBC------CEEEESSCHHHHHHHHH T ss_pred EEEEEECCCCCH--HHHHHHHHHHHHHCCCCEEEECCHHHEEECCCCCEECCCCCCH------HHHHHHHHHHHHHHHHH T ss_conf 799995798640--7899999999998799778876135032768884889999788------89897534777766555 Q ss_pred --CHHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCH-HHHH---HHHH--HCCCCEEECCHHHH Q ss_conf --21006366883288622479999999986235-85041174887525650-3433---4543--04431000372455 Q gi|254780696|r 79 --DLSQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEK-IFVT---EFSE--LMPPTLISRDITQI 149 (316) Q Consensus 79 --~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eK-l~~~---~~~~--~~P~T~vt~~~~~~ 149 (316) ....+-..-.|.+-|-.. ..+++.+.. ++.++|.|-.+.- .+| ++++ .||. ..-+|....+.. T Consensus 453 ~~~~~~~~~~~~~~~~pe~~-----~~ll~~l~~~~v~~ieP~wk~ll-snKaiLalLWel~P~hp~LLpt~f~~~~~-- 524 (619) T 2io8_A 453 EVSDREFAAVPIRTGHPQNE-----VRLIDVLLRPEVLVFEPLWTVIP-GNKAILPILWSLFPHHRYLLDTDFTVNDE-- 524 (619) T ss_dssp HC---CCSSCCCCSCCSSCC-----CCHHHHHTCTTCEEESCGGGGTT-TSTTHHHHHHHHSTTCTTCCCEESSCCHH-- T ss_pred HHHHHHHHCCCCCCCCCCHH-----HHHHHHHHCCCEEEECHHHHHHH-HCHHHHHHHHHHCCCCCCCCCCCCCCCCH-- T ss_conf 43002330144343674136-----78999975187389661788754-24389999997678985424220474302-- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCC-CC---CEEEEEECCEEEEEEE Q ss_conf 6888852143311168854344687448871158899999840013340021053445-68---2699998998863212 Q gi|254780696|r 150 TRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIR-DG---DKRILLLNGKPVGAVN 225 (316) Q Consensus 150 ~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~-~g---D~Rv~vi~g~~v~a~~ 225 (316) . .....|.||++|.+|.||........-..+ .....+..+.|.|+|.+-.. +| -+-++++||++.|... T Consensus 525 ---~-~~~~yV~KPi~GREG~nV~I~~~~~~v~~~---t~g~y~~~~~IyQe~~~Lp~~~g~y~~iG~wvvgg~~aGigi 597 (619) T 2io8_A 525 ---L-VKTGYAVKPIAGRCGSNIDLVSHHEEVLDK---TSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCL 597 (619) T ss_dssp ---H-HHHCEEEEETTCCTTTTCEEECTTSCEEEE---CCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEE T ss_pred ---H-HCCCEEECCCCCCCCCCEEEECCCCEEEEC---CCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCEEEEEEE T ss_conf ---2-138817667888888987996188606302---367778888599985688756898689989999999889999 Q ss_pred EECC Q ss_conf 2045 Q gi|254780696|r 226 RIPS 229 (316) Q Consensus 226 R~~~ 229 (316) |... T Consensus 598 Red~ 601 (619) T 2io8_A 598 RGDE 601 (619) T ss_dssp EEES T ss_pred ECCC T ss_conf 5379 No 50 >2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Probab=97.72 E-value=0.0017 Score=41.93 Aligned_cols=188 Identities=10% Similarity=-0.052 Sum_probs=100.3 Q ss_pred EEEEEE-CCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH-EEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC Q ss_conf 189970-9988848476467999999998898899995412-48999899999999998077741265046443521006 Q gi|254780696|r 6 NIAIQM-NHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ-LYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM 83 (316) Q Consensus 6 kI~fim-Dpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d-L~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f 83 (316) .+.|.. +..|.. -|+..|+..|++.|++.-++.+.| +.+..+ ..++... -... T Consensus 397 ~vh~~~~~~~ED~----~T~~yL~~~A~eAG~~t~~~~~~d~i~~~~~---------------g~f~D~~------g~~I 451 (652) T 2vob_A 397 RVHFCVDEEREEQ----YTALYCMQAAEAVGLEGKLCILFDEFRFDDN---------------GHVVDSD------GVRV 451 (652) T ss_dssp EEEEEECSCHHHH----HHHHHHHHHHHHTTCEEEEEETTTTCEECTT---------------SCEECTT------SCBC T ss_pred EEEEEECCCCHHH----HHHHHHHHHHHHCCCCEEEEEEEEEEEECCC---------------CCEECCC------CCCH T ss_conf 4999969982668----9999999999986986177410104657688---------------8788999------8485 Q ss_pred CEEEEECCCCCCH---HH-----------------HHHHHHHHHH-CCCCEEECCHHHHHHCCCHHHHH---HHHH--HC Q ss_conf 3668832886224---79-----------------9999999862-35850411748875256503433---4543--04 Q gi|254780696|r 84 DVILIRQDPPFNM---HY-----------------ITSTYLLEKI-NPETLIVNNPFWIRNSPEKIFVT---EFSE--LM 137 (316) Q Consensus 84 D~i~iR~dPp~d~---~y-----------------i~~~~~Le~~-~~~~~viN~p~~i~~~~eKl~~~---~~~~--~~ 137 (316) +++| |.=|.-.+ .+ +... .+... +.++.+||.|-.+.-.|-=++++ .||. .. T Consensus 452 ~~lf-KLYPWE~m~~d~~~~~~~~~~~~~~~~~~~v~l~-~~~l~~~~~v~~iEP~Wk~llsNKaiLalLWeL~P~HP~L 529 (652) T 2vob_A 452 RNVW-KTWMWESAITDYYAAREERGENWKPSPKDKVRLC-DLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAI 529 (652) T ss_dssp CEEE-ECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHH-HHHSSSCTTSEEESCGGGGTTTSTTHHHHHHHHCTTCTTB T ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-HHHHCCCCCEEEECCHHHHHHCCHHHHHHHHHHCCCCCCC T ss_conf 6677-5511988764043110023322455642002233-3443134645895737997743548999999866898001 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCC----CEEE Q ss_conf 431000372455688885214331116885434468744887115889999984001334002105344568----2699 Q gi|254780696|r 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDG----DKRI 213 (316) Q Consensus 138 P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~g----D~Rv 213 (316) -+|....+. ++. ....|.||++|-.|.+|..+.... . .+.+.--..+....|.|+|.+-...+ -+-+ T Consensus 530 Lpa~fe~~~-----~l~-~~~yV~KPi~GREG~nV~I~~~~g-~--v~~~~~g~Y~~~~~IyQe~~~Lp~~~g~y~~iG~ 600 (652) T 2vob_A 530 LKAEYELTD-----ELR-KHGYAKKPIVGRVGSNVIITSGDG-V--VHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGG 600 (652) T ss_dssp CCEESSCCH-----HHH-HHCEEEEECC------------------------------CEEEEECCC--CBTTBCCEEEE T ss_pred CCHHCCCCC-----CCC-CCCEEECCCCCCCCCCEEEECCCC-E--EEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEE T ss_conf 703305654-----213-488474126655578869972896-3--8715788878787389971678776894279999 Q ss_pred EEECCEEEEEEEEECC Q ss_conf 9989988632122045 Q gi|254780696|r 214 LLLNGKPVGAVNRIPS 229 (316) Q Consensus 214 ~vi~g~~v~a~~R~~~ 229 (316) +++||++.|...|... T Consensus 601 wvVgge~aGlgiRed~ 616 (652) T 2vob_A 601 WMIGDAFSGTGIREDK 616 (652) T ss_dssp EEETTEEEEEEEEC-- T ss_pred EEECCEEEEEEEEECC T ss_conf 9999998799996069 No 51 >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=97.42 E-value=7.3e-05 Score=50.86 Aligned_cols=85 Identities=20% Similarity=0.265 Sum_probs=58.8 Q ss_pred HCCCHHHHHHHHH----H-CCCC-EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH---- Q ss_conf 2565034334543----0-4431-00037245568888521-4331116885434468744887115889999984---- Q gi|254780696|r 123 NSPEKIFVTEFSE----L-MPPT-LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE---- 191 (316) Q Consensus 123 ~~~eKl~~~~~~~----~-~P~T-~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~---- 191 (316) ...||..+-++.+ + +|-+ -...|.+++..+.++.| |+++||.+|.||+|+..+. +..++...++...+ T Consensus 5 amGDK~~Ak~la~~aGVP~vPg~~~~~~~~~ea~~~a~~iG~Pv~vKaa~GGGG~Gm~iv~-~~~el~~a~~~a~~eA~~ 83 (108) T 2cqy_A 5 SSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAW-DDEETRDGFRLSSQEAAS 83 (108) T ss_dssp CCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEES-SHHHHHHHHHHHHHHHHH T ss_pred HHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHH T ss_conf 5658999999999939192888698889999999999871997498814567544027868-999999999998899997 Q ss_pred -HCCCCCCEEECCCCCCC Q ss_conf -00133400210534456 Q gi|254780696|r 192 -KYPEPLMIQSYLPQIRD 208 (316) Q Consensus 192 -~~~~~ii~Qefi~~~~~ 208 (316) -+...+++.+||+..++ T Consensus 84 ~Fgd~~v~iEk~i~~~RH 101 (108) T 2cqy_A 84 SFGDDRLLIEKFIDNPRH 101 (108) T ss_dssp HTSSCCEEEEECCSSSSC T ss_pred CCCCCCEEEEEECCCCEE T ss_conf 079997898870799808 No 52 >3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase, structural genomics; HET: MSE; 1.90A {Methylobacillus flagellatus KT} Probab=95.36 E-value=0.048 Score=32.38 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=61.4 Q ss_pred HHHHCCCCCCCCCEEEECCCCC--CHH--HHHHHHHHHCC---CCCCEEECCCCCC--CC---CEEEEEECCEEEEEEEE Q ss_conf 3311168854344687448871--158--89999984001---3340021053445--68---26999989988632122 Q gi|254780696|r 159 IIIKPLYGNGGTGVFRITLGDR--NFS--SLIEMLFEKYP---EPLMIQSYLPQIR--DG---DKRILLLNGKPVGAVNR 226 (316) Q Consensus 159 vViKPl~g~~G~gV~~i~~~~~--~~~--~~~e~~~~~~~---~~ii~Qefi~~~~--~g---D~Rv~vi~g~~v~a~~R 226 (316) |++|-=.|+.|-||..+...++ +++ ..-.+...++. ..+++||-++... ++ +--|.++|+.++|...| T Consensus 280 V~vKad~GTYGMGIm~v~s~~ei~~Lnrk~rnKm~~~K~g~~v~~viiQEGV~T~e~~~~~vaEPvvY~id~~~vggFYR 359 (432) T 3k1t_A 280 VIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGGFYR 359 (432) T ss_dssp EEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEEEEE T ss_pred EEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCEEEEEEEE T ss_conf 99967899877437996589999997188887566404888703078976854200137855563699988878789998 Q ss_pred ECCCCCCCCCCCC-CCCEEEE Q ss_conf 0456860000001-4731110 Q gi|254780696|r 227 IPSEVDNRSNIHA-GGKAELT 246 (316) Q Consensus 227 ~~~~~~~r~Nl~~-Gg~~~~~ 246 (316) +.++-+-..||-. |...++. T Consensus 360 vh~~k~~~eNLNspGm~F~pl 380 (432) T 3k1t_A 360 VHTSRGADENLNAPGMHFEPL 380 (432) T ss_dssp EESCCSTTTTTSCCTTCEEEE T ss_pred ECCCCCCCCCCCCCCCEEEEC T ss_conf 778888755769999862324 No 53 >1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii OT3} Probab=92.64 E-value=0.11 Score=29.90 Aligned_cols=80 Identities=9% Similarity=0.113 Sum_probs=46.3 Q ss_pred HHCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCC-----CCCCEEEECCCCCCHHHHHHHHH----HHC----CCCCCEE Q ss_conf 30443100037245568888521-4331116885-----43446874488711588999998----400----1334002 Q gi|254780696|r 135 ELMPPTLISRDITQITRFYLEMK-DIIIKPLYGN-----GGTGVFRITLGDRNFSSLIEMLF----EKY----PEPLMIQ 200 (316) Q Consensus 135 ~~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~-----~G~gV~~i~~~~~~~~~~~e~~~----~~~----~~~ii~Q 200 (316) -++|++.+.++++++.++.++.| |+|+|..... .+-||.....+...+...++.+. ... ...+++| T Consensus 34 IpvP~~~~~~s~~ea~~~a~~ig~PvVlK~~~~~~~~k~~~GgV~l~i~~~~~~~~a~~~~~~~~~~~~~~~~v~~vlVe 113 (238) T 1wr2_A 34 LPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVA 113 (238) T ss_dssp CCCCCCEEESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEE T ss_pred CCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 99999517699999999999819978999845877768985158466788799999999988766412876533518999 Q ss_pred ECCCCCCCCCEEEEEE Q ss_conf 1053445682699998 Q gi|254780696|r 201 SYLPQIRDGDKRILLL 216 (316) Q Consensus 201 efi~~~~~gD~Rv~vi 216 (316) ++++. ..++.+-+. T Consensus 114 ~~~~~--~~Elylgi~ 127 (238) T 1wr2_A 114 PMLKP--GREVIIGVT 127 (238) T ss_dssp ECCCC--CEEEEEEEE T ss_pred EECCC--CEEEEEEEE T ss_conf 70358--718999986 No 54 >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Probab=88.92 E-value=0.48 Score=25.80 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=47.9 Q ss_pred HHHHCCCCEEECCHHHHHHHHHHHH--HHHHHCCCCCCCCC----EEEECCCCCCHHHHHHHHHHH----------C--C Q ss_conf 5430443100037245568888521--43311168854344----687448871158899999840----------0--1 Q gi|254780696|r 133 FSELMPPTLISRDITQITRFYLEMK--DIIIKPLYGNGGTG----VFRITLGDRNFSSLIEMLFEK----------Y--P 194 (316) Q Consensus 133 ~~~~~P~T~vt~~~~~~~~f~~~~~--~vViKPl~g~~G~g----V~~i~~~~~~~~~~~e~~~~~----------~--~ 194 (316) |--++|+..+..+++++.+..++.+ ++|+|+=--.|||| |. +..+-.........+..+ + - T Consensus 15 ~gipvp~g~~~~~~~e~~~~~~~l~~~~~VvKaQvlaGGRGKaGGVk-i~~s~~ea~~~a~~~lg~~l~t~qt~~~G~~v 93 (388) T 2nu8_B 15 YGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVK-VVNSKEDIRAFAENWLGKRLVTYQTDANGQPV 93 (388) T ss_dssp TTCCCCCEEEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEE-EECSHHHHHHHHHHHTTSEECCTTSCTTCEEC T ss_pred CCCCCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE-EECCHHHHHHHHHHHHCCCCEECCCCCCCCEE T ss_conf 59989994278999999999998689959998552478876667179-96999999999999847320131347788276 Q ss_pred CCCCEEECCC Q ss_conf 3340021053 Q gi|254780696|r 195 EPLMIQSYLP 204 (316) Q Consensus 195 ~~ii~Qefi~ 204 (316) ..+++.++++ T Consensus 94 ~~vlvee~~~ 103 (388) T 2nu8_B 94 NQILVEAATD 103 (388) T ss_dssp CCEEEEECCC T ss_pred EEEEEECCCC T ss_conf 6999970357 No 55 >3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* Probab=86.79 E-value=0.41 Score=26.25 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=27.5 Q ss_pred CCCEEEEEECCHHHCCCCC-----CCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 5331899709988848476-----46799999999889889999541 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKE-----DSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~-----DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) +.|||+|+.+- --|.+ +....|.++.+++||+|.++.|. T Consensus 1 ~~MkIl~~~~~---~~P~~~GG~~~~~~~La~~L~~~Gh~V~vvtp~ 44 (439) T 3fro_A 1 RHMKVLLLGFE---FLPVKVGGLAEALTAISEALASLGHEVLVFTPS 44 (439) T ss_dssp CCCEEEEECSC---CTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEEC T ss_pred CCEEEEEECCC---CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 97099998886---798567879999999999999769989999158 No 56 >2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Probab=86.48 E-value=0.65 Score=24.95 Aligned_cols=43 Identities=7% Similarity=-0.059 Sum_probs=30.7 Q ss_pred CCCEEEEEECCHHHCCCCCC-------------CHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 53318997099888484764-------------67999999998898899995412 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKED-------------STFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~D-------------TT~~Lm~eAq~RGheV~~~~~~d 45 (316) |.|||+++-.|+..-....+ ....|+++..+|||+|.++.+.+ T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~pP~~~GG~E~~v~~La~~L~~~GH~V~v~~~~~ 57 (342) T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPG 57 (342) T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTT T ss_pred CCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 97379997666557777767669899988599999999999997699899992599 No 57 >2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae} Probab=86.15 E-value=0.7 Score=24.76 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=27.8 Q ss_pred CEEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 31899709988-848476467999999998898899995412 Q gi|254780696|r 5 RNIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 5 ~kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) |||+|+..+-. .+. -.+.|+++..+|||+|.++.+.+ T Consensus 1 Mrilf~~~~~~GH~~----~~l~LA~aL~~~GH~V~v~t~~~ 38 (384) T 2p6p_A 1 MRILFVAAGSPATVF----ALAPLATAARNAGHQVVMAANQD 38 (384) T ss_dssp CEEEEECCSSHHHHH----HHHHHHHHHHHTTCEEEEEECGG T ss_pred CEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCC T ss_conf 949998899661899----99999999998899899994852 No 58 >2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* Probab=85.16 E-value=0.51 Score=25.67 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=28.2 Q ss_pred CCCEEEEEECCHHHCC-CC--CCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 5331899709988848-47--646799999999889889999541 Q gi|254780696|r 3 KIRNIAIQMNHISTVK-VK--EDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 3 k~~kI~fimDpi~~i~-~~--~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) +.|||||+.+.. +. +. ..-+..|+++..++||+|.++.+. T Consensus 19 ~~MkI~iv~~~~--~p~~GG~~~~i~~La~~L~~~GheV~v~~~~ 61 (406) T 2gek_A 19 SHMRIGMVCPYS--FDVPGGVQSHVLQLAEVLRDAGHEVSVLAPA 61 (406) T ss_dssp --CEEEEECSSC--TTSCCHHHHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCEEEEECCCC--CCCCCHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 998899989987--8999879999999999999779989999428 No 59 >2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} Probab=84.12 E-value=0.73 Score=24.62 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=26.8 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 533189970998884847646799999999889889999541 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) |.|||+|+.-|. +-=....+..|+++.+++||+|.++.+. T Consensus 14 mkMKI~iv~~P~--~GG~~~~~~~La~~L~~~Gh~V~vit~~ 53 (394) T 2jjm_A 14 MKLKIGITCYPS--VGGSGVVGTELGKQLAERGHEIHFITSG 53 (394) T ss_dssp -CCEEEEECCC----CHHHHHHHHHHHHHHHTTCEEEEECSS T ss_pred CCCEEEEECCCC--CCCHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 547799989999--9959999999999999779989999479 No 60 >1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=83.27 E-value=1.1 Score=23.48 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=29.3 Q ss_pred CEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE Q ss_conf 3189970998-88484764679999999988988999954124 Q gi|254780696|r 5 RNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316) Q Consensus 5 ~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316) |||+|..-.- -.++| .++|+++.++|||+|.++.+.++ T Consensus 1 M~il~~~~gt~Ghv~P----~lala~~L~~~Gh~V~~~~~~~~ 39 (415) T 1iir_A 1 MRVLLATCGSRGDTEP----LVALAVRVRDLGADVRMCAPPDC 39 (415) T ss_dssp CEEEEECCSCHHHHHH----HHHHHHHHHHTTCEEEEEECGGG T ss_pred CEEEEECCCCHHHHHH----HHHHHHHHHHCCCEEEEEECCCH T ss_conf 9799988986468999----99999999987998999958307 No 61 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Probab=82.63 E-value=1.3 Score=23.02 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=28.2 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHE Q ss_conf 96533189970998884847646799999999889889999--54124 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQL 46 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL 46 (316) |.+||||++.. ....-=.++++++.++||+|..+ +++.+ T Consensus 1 m~~m~KIlItG-------atG~iG~~l~~~Ll~~g~~V~~l~R~~~~~ 41 (227) T 3dhn_A 1 MEKVKKIVLIG-------ASGFVGSALLNEALNRGFEVTAVVRHPEKI 41 (227) T ss_dssp --CCCEEEEET-------CCHHHHHHHHHHHHTTTCEEEEECSCGGGC T ss_pred CCCCCEEEEEC-------CCCHHHHHHHHHHHHCCCEEEEEECCHHHC T ss_conf 99999999988-------998899999999997849899998684762 No 62 >3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Probab=81.58 E-value=1.6 Score=22.35 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=30.4 Q ss_pred CCCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 9653318997099888-48476467999999998898899995412 Q gi|254780696|r 1 MKKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 1 mkk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) ||| ++|+|+.-+-.. +. -+++|.++..+|||+|.++.+.+ T Consensus 2 m~~-~~il~~~~~g~GH~~----p~l~la~~L~~rGh~V~~~~~~~ 42 (402) T 3ia7_A 2 MRQ-RHILFANVQGHGHVY----PSLGLVSELARRGHRITYVTTPL 42 (402) T ss_dssp CCC-CEEEEECCSSHHHHH----HHHHHHHHHHHTTCEEEEEECHH T ss_pred CCC-CEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCC T ss_conf 999-989998998464799----99999999998889899997810 No 63 >3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora} Probab=79.85 E-value=1.9 Score=21.94 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=29.4 Q ss_pred CCCCEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 6533189970998-8848476467999999998898899995412 Q gi|254780696|r 2 KKIRNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 2 kk~~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) +.|.+|+|+.-+. ..++ -+++|.+|..+|||+|.++.+.. T Consensus 18 ~~m~~il~~~~~~~GH~~----p~l~la~~L~~rGH~V~v~t~~~ 58 (416) T 3iaa_A 18 RHMAHLLIVNVASHGLIL----PTLTVVTELVRRGHRVSYVTAGG 58 (416) T ss_dssp --CCEEEEECCSCHHHHH----HHHHHHHHHHHTTCEEEEEECGG T ss_pred CCCCEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCH T ss_conf 699808997799563799----99999999997889899996823 No 64 >2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A Probab=79.25 E-value=1.6 Score=22.46 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=25.2 Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE-EE Q ss_conf 31899709988848476467999999998898899-99 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF-HY 41 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~-~~ 41 (316) ||++|++..--.-.....+.+.++++|.++||+|. ++ T Consensus 1 Mk~~i~v~~~P~~~~~a~~al~~A~aal~~gh~V~~vF 38 (130) T 2hy5_A 1 MKFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVF 38 (130) T ss_dssp CEEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 98999974799983789999999999997799089999 No 65 >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Probab=79.15 E-value=2.2 Score=21.43 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=25.1 Q ss_pred HHCCCCEEECCHHHHHHHHHHHH--HHHHHCC--CCCCCC Q ss_conf 30443100037245568888521--4331116--885434 Q gi|254780696|r 135 ELMPPTLISRDITQITRFYLEMK--DIIIKPL--YGNGGT 170 (316) Q Consensus 135 ~~~P~T~vt~~~~~~~~f~~~~~--~vViKPl--~g~~G~ 170 (316) -++|+..+..+++++.+..++.+ ++|+|+= .|..|+ T Consensus 17 ipvp~g~~~~~~~e~~~~~~~l~~~~~VvKaQv~aGgRGK 56 (395) T 2fp4_B 17 VKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGK 56 (395) T ss_dssp CCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGG T ss_pred CCCCCCEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCC T ss_conf 9899932328999999999970999689990422587754 No 66 >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Probab=78.44 E-value=2.9 Score=20.73 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=54.2 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH Q ss_conf 96533189970998884847646799999999889889999541248999899999999998077741265046443521 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316) |.|.|||+|+. + .---..|++-..+.||+|+.++.+.=... .+.... .....+-.--. T Consensus 1 m~~~MkIg~IG-----l---G~MG~~mA~~L~~~g~~v~v~dr~~~~~~-----------~l~~~G---a~~~~s~~e~~ 58 (301) T 3cky_A 1 MEKSIKIGFIG-----L---GAMGKPMAINLLKEGVTVYAFDLMEANVA-----------AVVAQG---AQACENNQKVA 58 (301) T ss_dssp ---CCEEEEEC-----C---CTTHHHHHHHHHHTTCEEEEECSSHHHHH-----------HHHTTT---CEECSSHHHHH T ss_pred CCCCCEEEEEE-----H---HHHHHHHHHHHHHCCCEEEEECCCHHHHH-----------HHHHCC---CEECCCHHHHH T ss_conf 99889899980-----2---78899999999978992899779999999-----------999849---97858999998 Q ss_pred HHCCEEEEEC-CCCCCHHHHH--HHHHHHHHCCCCEEEC----CHHHHHHCCCHHH Q ss_conf 0063668832-8862247999--9999986235850411----7488752565034 Q gi|254780696|r 81 SQMDVILIRQ-DPPFNMHYIT--STYLLEKINPETLIVN----NPFWIRNSPEKIF 129 (316) Q Consensus 81 ~~fD~i~iR~-dPp~d~~yi~--~~~~Le~~~~~~~viN----~p~~i~~~~eKl~ 129 (316) ...|++|.=. |++ ..+.+. ...++..+.++..+|+ +|...+...+++. T Consensus 59 ~~~dvv~~~l~~~~-a~~~v~~~~~~i~~~~~~g~iiid~sT~~p~~~~~~~~~~~ 113 (301) T 3cky_A 59 AASDIIFTSLPNAG-IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAA 113 (301) T ss_dssp HHCSEEEECCSSHH-HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHH T ss_pred HCCCEEEEEECCHH-HHHHHHHCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHH T ss_conf 45873688505688-99999817503655258992899899999899999999999 No 67 >2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Probab=77.19 E-value=1.3 Score=23.05 Aligned_cols=36 Identities=11% Similarity=0.009 Sum_probs=26.1 Q ss_pred CEEEEEECCHHHCCCC-C-----CCHHHHHHHHHHCCCEEEEEEH Q ss_conf 3189970998884847-6-----4679999999988988999954 Q gi|254780696|r 5 RNIAIQMNHISTVKVK-E-----DSTFAIALEAQVRGYQIFHYTP 43 (316) Q Consensus 5 ~kI~fimDpi~~i~~~-~-----DTT~~Lm~eAq~RGheV~~~~~ 43 (316) |||+|+...+ =|- + +-...|.++..++||+|.++.| T Consensus 1 M~I~~v~~e~---~p~~~~GGl~~~v~~L~~aL~~~Gh~V~VitP 42 (485) T 2qzs_A 1 MQVLHVCSEM---FPLLKTGGLADVIGALPAAQIADGVDARVLLP 42 (485) T ss_dssp CEEEEECSCB---TTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEE T ss_pred CEEEEEEEEE---CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 9799997722---56235466999999999999976997999968 No 68 >1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Probab=77.07 E-value=1.9 Score=21.86 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=27.0 Q ss_pred CEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE Q ss_conf 3189970998-88484764679999999988988999954124 Q gi|254780696|r 5 RNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316) Q Consensus 5 ~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316) |||+|..-+- -.+.| .++|+++..+|||+|.++.+.++ T Consensus 1 MrIl~~~~gt~Ghv~P----~l~lA~~L~~rGh~V~~~t~~~~ 39 (416) T 1rrv_A 1 MRVLLSVCGTRGDVEI----GVALADRLKALGVQTRMCAPPAA 39 (416) T ss_dssp CEEEEEEESCHHHHHH----HHHHHHHHHHTTCEEEEEECGGG T ss_pred CEEEEECCCCHHHHHH----HHHHHHHHHHCCCEEEEEECHHH T ss_conf 9499987986678999----99999999987998999958567 No 69 >2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Probab=76.30 E-value=3.9 Score=19.84 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=27.5 Q ss_pred CCCCCEEEEEECCHHHCCC--CC-----CC------HHHHHHHHHHCCCEEEEEE Q ss_conf 9653318997099888484--76-----46------7999999998898899995 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKV--KE-----DS------TFAIALEAQVRGYQIFHYT 42 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~--~~-----DT------T~~Lm~eAq~RGheV~~~~ 42 (316) |.++++|+|+- |-.+.++ .+ |+ ...|+++..++||+|.++. T Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~GG~~~yi~~La~~L~~~Gh~V~V~T 57 (499) T 2r60_A 4 MTRIKHVAFLN-PQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIIT 57 (499) T ss_dssp ---CCEEEEEC-CSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 77654599987-8766674334658892989899999999999997799699995 No 70 >2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Probab=75.81 E-value=2 Score=21.80 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=26.4 Q ss_pred CEEEEEECCHHHCCCCC---CCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 31899709988848476---46799999999889889999541 Q gi|254780696|r 5 RNIAIQMNHISTVKVKE---DSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~---DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) |||||++. +--|.. -.++.|+++.++|||+|.++... T Consensus 1 m~i~~~~~---~y~p~GG~e~~~~~la~~L~~~Gh~V~v~t~~ 40 (374) T 2iw1_A 1 MIVAFCLY---KYFPFGGLQRDFMRIASTVAARGHHVRVYTQS 40 (374) T ss_dssp -CEEEECS---EECTTCHHHHHHHHHHHHHHHTTCCEEEEESE T ss_pred CEEEEECC---CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 97999948---67999988999999999999779969999667 No 71 >1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Probab=71.33 E-value=3 Score=20.64 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=26.5 Q ss_pred CEEEEEECCHHHC-CCC--CCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 3189970998884-847--646799999999889889999541 Q gi|254780696|r 5 RNIAIQMNHISTV-KVK--EDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 5 ~kI~fimDpi~~i-~~~--~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) |||+|+....--+ ... .+-...|.++.+++||+|.++.|. T Consensus 1 Mkil~i~~e~~p~~~~GGl~~v~~~La~aL~~~Gh~V~VitP~ 43 (485) T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPG 43 (485) T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9899996875061245789999999999999769979999679 No 72 >2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1 Probab=69.24 E-value=3.6 Score=20.08 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=26.6 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE-EE Q ss_conf 5331899709988848476467999999998898899-99 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF-HY 41 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~-~~ 41 (316) ..||++|++...-.-.....+-+.++++|.++||+|. ++ T Consensus 11 ~~Mk~~iiv~~~Py~~~~a~~Al~fA~aal~~gh~V~~vF 50 (140) T 2d1p_A 11 GSMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVF 50 (140) T ss_dssp CCCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 7308999983799874899999999999997899089999 No 73 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Probab=67.42 E-value=3.9 Score=19.85 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=27.0 Q ss_pred CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEC Q ss_conf 5686000000147311100778999999999999998498799995117 Q gi|254780696|r 229 SEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIG 277 (316) Q Consensus 229 ~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig 277 (316) ++|.+.-|+++|+..... .+.+.|.+.-+..|++|+.. T Consensus 223 k~~~~liN~~RG~~vd~~-----------aL~~aL~~g~i~~aalDV~~ 260 (307) T 1wwk_A 223 KKTAILINTSRGPVVDTN-----------ALVKALKEGWIAGAGLDVFE 260 (307) T ss_dssp CTTCEEEECSCGGGBCHH-----------HHHHHHHHTSSSEEEESCCS T ss_pred CCCEEEEECCCCCCCCHH-----------HHHHHHHHCCCEEEEEECCC T ss_conf 998099977866446999-----------99999981996369995699 No 74 >3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Probab=67.17 E-value=4.1 Score=19.70 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=27.0 Q ss_pred CCCEEEEEEC---CHHHCCCCCC------CHHHHHHHHHHCCCEEEEEEH Q ss_conf 5331899709---9888484764------679999999988988999954 Q gi|254780696|r 3 KIRNIAIQMN---HISTVKVKED------STFAIALEAQVRGYQIFHYTP 43 (316) Q Consensus 3 k~~kI~fimD---pi~~i~~~~D------TT~~Lm~eAq~RGheV~~~~~ 43 (316) +.|||+|+-. |++... ..| -...|+++..++||+|.++.. T Consensus 19 ~~~ri~~vs~~~~P~~~~g-~~d~GG~e~~v~~La~~L~~~Gh~V~v~t~ 67 (438) T 3c48_A 19 SHMRVAMISMHTSPLQQPG-TGDSGGMNVYILSTATELAKQGIEVDIYTR 67 (438) T ss_dssp CCCEEEEECTTSCTTCC--------CHHHHHHHHHHHHHHTTCEEEEEEE T ss_pred CCCEEEEECCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 9977999846636300059-998679999999999999977996999954 No 75 >2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B Probab=67.07 E-value=3.5 Score=20.18 Aligned_cols=43 Identities=5% Similarity=-0.020 Sum_probs=30.5 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 5331899709988848476467999999998898899995412 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) +|||++|++..----.....+.+.++.++...||+|-++-..| T Consensus 4 ~mkk~l~ii~~~Py~~~~a~eal~~A~a~~a~~~~V~vff~~d 46 (136) T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDD 46 (136) T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGG T ss_pred HHCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 5237899977899986789999999999984799779999331 No 76 >1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} SCOP: c.23.5.4 PDB: 1x77_A* Probab=66.97 E-value=4.8 Score=19.29 Aligned_cols=41 Identities=15% Similarity=-0.022 Sum_probs=26.9 Q ss_pred CCCCCEEEEEECCHHHCCCCCCC-HHHHHHHHHHC---CCEEEEEEHHHE Q ss_conf 96533189970998884847646-79999999988---988999954124 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDS-TFAIALEAQVR---GYQIFHYTPDQL 46 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DT-T~~Lm~eAq~R---GheV~~~~~~dL 46 (316) |+.-|||+++-= .+.++| |..|++++++. |+++.+++..++ T Consensus 3 m~~~MKIl~I~G-----S~R~~S~t~~l~~~~~~~~~~g~ev~~idl~~l 47 (193) T 1rtt_A 3 LSDDIKVLGISG-----SLRSGSYNSAALQEAIGLVPPGMSIELADISGI 47 (193) T ss_dssp ----CEEEEEES-----CCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTC T ss_pred CCCCCEEEEEEC-----CCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHC T ss_conf 889977999989-----899888899999999986469998999876778 No 77 >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Probab=58.95 E-value=8.8 Score=17.53 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=25.4 Q ss_pred CCEEEEEECCHHHCCCCC-CCHHHHHHHHHHCCCEEEEEEH Q ss_conf 331899709988848476-4679999999988988999954 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKE-DSTFAIALEAQVRGYQIFHYTP 43 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~-DTT~~Lm~eAq~RGheV~~~~~ 43 (316) .|+++||.=.=. +..| --|..|+++.++||++|-|+-| T Consensus 25 ~M~~lfItGT~T--gVGKT~Vs~~L~~aL~~~G~~V~~~KP 63 (251) T 3fgn_A 25 HMTILVVTGTGT--GVGKTVVCAALASAARQAGIDVAVCKP 63 (251) T ss_dssp SCEEEEEEESST--TSCHHHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCCEEEEEECCC--CCHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 598689986999--961999999999999968994999774 No 78 >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Probab=58.84 E-value=8.9 Score=17.52 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=29.3 Q ss_pred CEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHHE Q ss_conf 318997099888-484764679999999988988999954124 Q gi|254780696|r 5 RNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316) Q Consensus 5 ~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316) ++|+|+.-|-.. +.| .++|++|..+|||+|.++.+... T Consensus 8 ~hi~~~~~p~~GH~~p----~l~la~~L~~~GH~V~~~t~~~~ 46 (430) T 2iyf_A 8 AHIAMFSIAAHGHVNP----SLEVIRELVARGHRVTYAIPPVF 46 (430) T ss_dssp CEEEEECCSCHHHHGG----GHHHHHHHHHTTCEEEEEECGGG T ss_pred CEEEEECCCCHHHHHH----HHHHHHHHHHCCCEEEEEECCHH T ss_conf 8899967874507999----99999999978898999978216 No 79 >2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB: 3h7e_A* 1ru8_A Probab=56.76 E-value=7.8 Score=17.88 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=25.9 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE Q ss_conf 96533189970998884847646799999999889889999 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY 41 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~ 41 (316) |--|++++.. +.=.|||+++|.+ |+++||+|-++ T Consensus 1 ~~~~~~v~vl------~SGGKDS~lAl~~-a~~~G~~v~~L 34 (227) T 2d13_A 1 MVGLADVAVL------YSGGKDSNYALYW-ALKSGLRVRYL 34 (227) T ss_dssp -CCSCEEEEE------CCSSHHHHHHHHH-HHHTTCEEEEE T ss_pred CCCCCCEEEE------CCCCHHHHHHHHH-HHHCCCEEEEE T ss_conf 9886649999------3686999999999-99869927999 No 80 >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Probab=54.43 E-value=10 Score=17.05 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=31.7 Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE Q ss_conf 653318997099888484764679999999988988999954124 Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316) Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316) |+.++||++.- +-++.+ .+..++...++.||+||-.+|+.= T Consensus 12 ~~~KsIAVVGa---S~~~~k-~g~~v~~~l~~~g~~V~pVnP~~~ 52 (138) T 1y81_A 12 KEFRKIALVGA---SKNPAK-YGNIILKDLLSKGFEVLPVNPNYD 52 (138) T ss_dssp --CCEEEEETC---CSCTTS-HHHHHHHHHHHTTCEEEEECTTCS T ss_pred CCCCEEEEECC---CCCCCC-HHHHHHHHHHHCCCEEEEECCCCC T ss_conf 10477999921---699998-299999999978998999889984 No 81 >1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Probab=51.97 E-value=11 Score=16.80 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=25.1 Q ss_pred CCCC-CEEEEEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 9653-3189970998-884847646799999999889889999541 Q gi|254780696|r 1 MKKI-RNIAIQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 1 mkk~-~kI~fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) |.+. |||+|..--. -++. -+++|++|.++|||+|.|+... T Consensus 2 ~~~~~kkili~t~GtGGHi~----~a~ala~~L~~~g~eV~~i~~~ 43 (364) T 1f0k_A 2 MSGQGKRLMVMAGGTGGHVF----PGLAVAHHLMAQGWQVRWLGTA 43 (364) T ss_dssp -----CEEEEECCSSHHHHH----HHHHHHHHHHTTTCEEEEEECT T ss_pred CCCCCCEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEEEC T ss_conf 99999769998689799999----9999999999688989999838 No 82 >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Probab=50.18 E-value=12 Score=16.62 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=26.1 Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 6533189970998884847646799999999889889999541 Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) .+||||+|+.= ..-=..|++...+.||+|+.++.+ T Consensus 19 ~~mmkIg~IGl--------G~MG~~mA~~L~~~g~~v~v~dr~ 53 (310) T 3doj_A 19 SHMMEVGFLGL--------GIMGKAMSMNLLKNGFKVTVWNRT 53 (310) T ss_dssp CCSCEEEEECC--------SHHHHHHHHHHHHTTCEEEEECSS T ss_pred CCCCEEEEECH--------HHHHHHHHHHHHHCCCEEEEECCC T ss_conf 77687978716--------889999999999789938998699 No 83 >2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Probab=48.55 E-value=13 Score=16.46 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=27.9 Q ss_pred CEEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 31899709988-848476467999999998898899995412 Q gi|254780696|r 5 RNIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 5 ~kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) ++|+|+.-|-. ++. -.++|+++..+|||+|.++.+.+ T Consensus 13 ~~ilf~~~p~~GHv~----p~l~la~~L~~rGH~V~v~~~~~ 50 (424) T 2iya_A 13 RHISFFNIPGHGHVN----PSLGIVQELVARGHRVSYAITDE 50 (424) T ss_dssp CEEEEECCSCHHHHH----HHHHHHHHHHHTTCEEEEEECGG T ss_pred CEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECCC T ss_conf 849997787163799----99999999998889899996841 No 84 >3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus} Probab=48.44 E-value=13 Score=16.45 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=27.2 Q ss_pred CCCEEEEEECC-HHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 53318997099-88848476467999999998898899995412 Q gi|254780696|r 3 KIRNIAIQMNH-ISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 3 k~~kI~fimDp-i~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) +.+||.|++.. +++ ..+-.+-+.++..|...||+|.++-..+ T Consensus 14 ~~~~i~Iivt~Gp~d-~~ra~~af~lA~~A~~~G~eV~iFl~~~ 56 (134) T 3mc3_A 14 QXXXILIVVTHGPED-LDRTYAPLFMASISASMEYETSVFFMIX 56 (134) T ss_dssp CCCEEEEEECCCGGG-THHHHHHHHHHHHHHHTTCEEEEEECTT T ss_pred CCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCEEEEEEEEC T ss_conf 663699999469998-7999999999999997899299999606 No 85 >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with cofactor and product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Probab=44.65 E-value=15 Score=16.07 Aligned_cols=33 Identities=15% Similarity=-0.048 Sum_probs=20.5 Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 31899709988848476467999999998898899995412 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) |||+++.- ..--+.++....++||+|.-++.+. T Consensus 1 MkI~ViGl--------GyVGl~~a~~la~~G~~V~g~D~d~ 33 (436) T 1mv8_A 1 MRISIFGL--------GYVGAVCAGCLSARGHEVIGVDVSS 33 (436) T ss_dssp CEEEEECC--------STTHHHHHHHHHHTTCEEEEECSCH T ss_pred CEEEEECC--------CHHHHHHHHHHHHCCCCEEEEECCH T ss_conf 97999896--------7789999999994899789998999 No 86 >1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} SCOP: c.23.5.3 PDB: 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* 2qx6_A* 2qx8_A* 2qx9_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 2bzs_A* Probab=43.87 E-value=10 Score=17.12 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=26.4 Q ss_pred CEEEEEECCHHHCCCCCCC-HH----HHHHHHHHCCCEEEEEEHHHEE Q ss_conf 3189970998884847646-79----9999999889889999541248 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDS-TF----AIALEAQVRGYQIFHYTPDQLY 47 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DT-T~----~Lm~eAq~RGheV~~~~~~dL~ 47 (316) |||+++.-. |.++| |. ++++++++.||+|-+++..+.. T Consensus 3 mKvLiI~g~-----P~~~S~s~~l~~~~~~~l~~~g~ev~~~dL~~~~ 45 (230) T 1sg0_A 3 KKVLIVYAH-----QEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMN 45 (230) T ss_dssp CEEEEEECC-----SCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTT T ss_pred CEEEEEEEC-----CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 889999828-----9985689999999999999679979999870249 No 87 >2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1 Probab=43.74 E-value=14 Score=16.23 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=24.5 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 331899709988848476467999999998898899995412 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) |+|++|+...---=......-+.+++++..-||+|.++-..| T Consensus 1 Mkk~~ii~~~~P~~~~~~~~al~~Ala~~~~~~~V~vff~~d 42 (119) T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIAD 42 (119) T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGG T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECH T ss_conf 966999967899987789999999999983799679999240 No 88 >3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Probab=43.57 E-value=9.6 Score=17.29 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=23.0 Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 31899709988848476467999999998898899995412 Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) |||+|+.+....-.=....+..|+ ++.++||+|.++.... T Consensus 1 MKIl~i~~~~~~~~G~~~~~~~l~-~~L~~~heV~v~~~~~ 40 (413) T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIV-PRISKAHEVIVFGIHA 40 (413) T ss_dssp CEEEEEEECTTCCSHHHHHHHHHH-HHHTTTSEEEEEEESC T ss_pred CEEEEECCCCCCCCCHHHHHHHHH-HHHHCCCCEEEEECCC T ss_conf 948998899999883999999999-9986589899997578 No 89 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=41.86 E-value=16 Score=15.79 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=31.7 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEE Q ss_conf 533189970998884847646799999999889889999541248 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLY 47 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~ 47 (316) -|++++++.- +-+|.+ .+..+++..+++||+||-.+|+.=. T Consensus 3 ~~K~iaVvGa---S~~~~k-~g~~v~~~L~~~G~~V~pVnP~~~~ 43 (122) T 3ff4_A 3 AMKKTLILGA---TPETNR-YAYLAAERLKSHGHEFIPVGRKKGE 43 (122) T ss_dssp CCCCEEEETC---CSCTTS-HHHHHHHHHHHHTCCEEEESSSCSE T ss_pred CCCEEEEEEE---CCCCCC-HHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 7664999966---699998-2999999999789989998887761 No 90 >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Probab=41.22 E-value=12 Score=16.63 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=10.5 Q ss_pred HHHHHHHHCCC-EEEEEEHH Q ss_conf 99999998898-89999541 Q gi|254780696|r 26 AIALEAQVRGY-QIFHYTPD 44 (316) Q Consensus 26 ~Lm~eAq~RGh-eV~~~~~~ 44 (316) +|..||..||- +|++.+.+ T Consensus 66 ~lglEAlSRGA~~v~fVE~~ 85 (201) T 2ift_A 66 SLGFEALSRQAKKVTFLELD 85 (201) T ss_dssp HHHHHHHHTTCSEEEEECSC T ss_pred HHHHHHHHCCCCEEEEEEEC T ss_conf 98999998899399999740 No 91 >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, structurual genomics; 2.20A {Pseudomonas aeruginosa PAO1} SCOP: c.2.1.3 d.81.1.1 Probab=40.35 E-value=17 Score=15.64 Aligned_cols=103 Identities=10% Similarity=0.101 Sum_probs=57.9 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCE---EEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCC Q ss_conf 9653318997099888484764679999999988988---9999541248999899999999998077741265046443 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQ---IFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKI 77 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGhe---V~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~ 77 (316) |.+.||||++. ....+=..|++-..++.|. ++.+.-.+ +.|+ ++.+.+ ..++..+-.. T Consensus 3 Ms~~i~VaIvG-------ATGyvG~eLi~lL~~~~hP~~~l~~~aS~~---saGk------~i~~~~---~~l~v~~l~~ 63 (340) T 2hjs_A 3 MSQPLNVAVVG-------ATGSVGEALVGLLDERDFPLHRLHLLASAE---SAGQ------RMGFAE---SSLRVGDVDS 63 (340) T ss_dssp --CCCCEEEET-------TTSHHHHHHHHHHHHTTCCCSCEEEEECTT---TTTC------EEEETT---EEEECEEGGG T ss_pred CCCCCEEEEEC-------CCCHHHHHHHHHHHHCCCCCCEEEEEECCC---CCCC------EEEECC---EEEEEEECCH T ss_conf 99985599988-------855999999999986699845399998667---7897------766899---2789996873 Q ss_pred CCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCH Q ss_conf 52100636688328862247999999998623585041174887525650 Q gi|254780696|r 78 IDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEK 127 (316) Q Consensus 78 ~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eK 127 (316) .++.++|++|.=... ..+.-+.-...+.+..||......|.-.+. T Consensus 64 ~~~~~~DvvF~alp~-----~~s~~~~~~~~~~g~~ViDlS~~~r~~~~p 108 (340) T 2hjs_A 64 FDFSSVGLAFFAAAA-----EVSRAHAERARAAGCSVIDLSGALEPSVAP 108 (340) T ss_dssp CCGGGCSEEEECSCH-----HHHHHHHHHHHHTTCEEEETTCTTTTTTSC T ss_pred HHHCCCCEEEECCCC-----CHHHHHHHHHHHCCEEEEECCCCCCCCCCC T ss_conf 242048889985886-----147999999854691799787656666421 No 92 >3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Probab=35.52 E-value=7.1 Score=18.14 Aligned_cols=43 Identities=9% Similarity=0.220 Sum_probs=29.0 Q ss_pred CCCCCEEEE-EECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEEH Q ss_conf 965331899-70998-88484764679999999988988999954 Q gi|254780696|r 1 MKKIRNIAI-QMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYTP 43 (316) Q Consensus 1 mkk~~kI~f-imDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~~ 43 (316) |.|.|||+. ||+|. ..+.-..+.-..++.+|.++|-++-++.- T Consensus 1 m~~~mKIAlaQ~n~~~GD~~~N~~ki~~~i~~A~~~GAdLvVfPE 45 (590) T 3n05_A 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPE 45 (590) T ss_dssp -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCT T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCC T ss_conf 986578989978998676999999999999999977995999888 No 93 >3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* Probab=34.96 E-value=21 Score=15.10 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.3 Q ss_pred HHHHHHHHHHCCCEEEEEEHHHE Q ss_conf 79999999988988999954124 Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQL 46 (316) Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL 46 (316) -++|+++..+|||+|.++.+.+. T Consensus 17 ~lalA~~L~~rGh~V~~~t~~~~ 39 (404) T 3h4t_A 17 LVALAARLRELGADARMCLPPDY 39 (404) T ss_dssp HHHHHHHHHHTTCCEEEEECGGG T ss_pred HHHHHHHHHHCCCEEEEEECCHH T ss_conf 99999999987997999978017 No 94 >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421} Probab=34.45 E-value=19 Score=15.35 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=46.6 Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHH Q ss_conf 84764679999999988988999954124899989999999999807774126504644352100636688328862247 Q gi|254780696|r 18 KVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMH 97 (316) Q Consensus 18 ~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~ 97 (316) +|++=|-..+-.++++.|-.+.++++.+-++..|+ . +.+.-..--.-.|++.+|..+.- T Consensus 57 epSTRTR~SFe~A~~~LGg~vi~~~~~~ss~~kgE---------------s---~~Dt~~~ls~~~d~iv~R~~~~~--- 115 (323) T 3gd5_A 57 KASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGE---------------P---VRDTARVLGRYVDGLAIRTFAQT--- 115 (323) T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEC----------C---------------C---HHHHHHHHTTTCSEEEEECSSHH--- T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC---------------C---HHHHHHHHHCCCHHHHEECCHHH--- T ss_conf 89711699999999985991996354224457763---------------0---37799998522114321000056--- Q ss_pred HHHHHHHHHHHC-CCCEEECCHHH Q ss_conf 999999998623-58504117488 Q gi|254780696|r 98 YITSTYLLEKIN-PETLIVNNPFW 120 (316) Q Consensus 98 yi~~~~~Le~~~-~~~~viN~p~~ 120 (316) . +.+.++ .++.|||--++ T Consensus 116 ~-----~~~~a~~s~vPVINag~~ 134 (323) T 3gd5_A 116 E-----LEEYAHYAGIPVINALTD 134 (323) T ss_dssp H-----HHHHHHHHCSCEEEEECS T ss_pred H-----HHHHHHCCCCCEEECCCC T ss_conf 7-----999852179776858887 No 95 >2fhz_A Colicin-E5 immunity protein; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.311.1.1 PDB: 2dfx_I Probab=30.76 E-value=24 Score=14.65 Aligned_cols=33 Identities=27% Similarity=0.612 Sum_probs=17.3 Q ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 0147311100778999999999999998498799995 Q gi|254780696|r 238 HAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGID 274 (316) Q Consensus 238 ~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiD 274 (316) +.+|.+...--++.-+++|+++++. ||..++|| T Consensus 20 ~l~Gn~~MkLs~kAAieVCe~Atk~----gL~I~~IE 52 (109) T 2fhz_A 20 ELKGNASMKLSPKAAIEVCNEAAKK----GLWILGID 52 (109) T ss_dssp HTTCTTTCCBCHHHHHHHHHHHHHH----TCCEEEEE T ss_pred HCCCCEEEEECCHHHHHHHHHHHHC----CCEEEEEE T ss_conf 0078468997708899999999866----91699864 No 96 >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46 Probab=29.79 E-value=19 Score=15.32 Aligned_cols=12 Identities=17% Similarity=-0.056 Sum_probs=5.1 Q ss_pred EECCHHHHHHCC Q ss_conf 411748875256 Q gi|254780696|r 114 IVNNPFWIRNSP 125 (316) Q Consensus 114 viN~p~~i~~~~ 125 (316) |=+++.++..+. T Consensus 73 Ve~~~~~~~~~~ 84 (187) T 2fhp_A 73 IEKNFAALKVIK 84 (187) T ss_dssp EESCHHHHHHHH T ss_pred EEECHHHHHHHH T ss_conf 994246776766 No 97 >1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1 Probab=28.55 E-value=26 Score=14.41 Aligned_cols=38 Identities=8% Similarity=0.077 Sum_probs=20.5 Q ss_pred CCEEEEEE-CCHHHCCCCCCCHHHHHHHHHH--CCCEEEEEE Q ss_conf 33189970-9988848476467999999998--898899995 Q gi|254780696|r 4 IRNIAIQM-NHISTVKVKEDSTFAIALEAQV--RGYQIFHYT 42 (316) Q Consensus 4 ~~kI~fim-Dpi~~i~~~~DTT~~Lm~eAq~--RGheV~~~~ 42 (316) |.|++|++ .++.+ ....++.+.++.++.. .|++|.++- T Consensus 1 M~k~~ii~~~~P~~-~~~~~~al~~a~a~~a~~~~~~V~vff 41 (117) T 1jx7_A 1 MQKIVIVANGAPYG-SESLFNSLRLAIALREQESNLDLRLFL 41 (117) T ss_dssp CCEEEEEECCCTTT-CSHHHHHHHHHHHHHHHCTTCEEEEEE T ss_pred CCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 95799999479988-278999999999998547898589999 No 98 >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Probab=28.37 E-value=27 Score=14.39 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=50.5 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH Q ss_conf 53318997099888484764679999999988988999954124899989999999999807774126504644352100 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ 82 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~ 82 (316) |.|||+|+.= ..--..|++...+.||+|+.++.+.=... .+..... ...++-.--..+ T Consensus 4 M~mkIgvIGl--------G~MG~~~a~~L~~~G~~V~~~d~~~~~~~-----------~l~~~g~---~~~~s~~e~~~~ 61 (299) T 1vpd_A 4 MTMKVGFIGL--------GIMGKPMSKNLLKAGYSLVVSDRNPEAIA-----------DVIAAGA---ETASTAKAIAEQ 61 (299) T ss_dssp --CEEEEECC--------STTHHHHHHHHHHTTCEEEEECSCHHHHH-----------HHHHTTC---EECSSHHHHHHH T ss_pred CCCEEEEEEE--------HHHHHHHHHHHHHCCCEEEEEECCHHHHH-----------HHHHCCC---EECCCHHHHHHC T ss_conf 5452889830--------89889999999978996999809999999-----------9998599---454899999847 Q ss_pred CCEEEEEC-CCCCCHHHHH-HHHHHHHHCCCCEEEC----CHHHHHHCCCHHH Q ss_conf 63668832-8862247999-9999986235850411----7488752565034 Q gi|254780696|r 83 MDVILIRQ-DPPFNMHYIT-STYLLEKINPETLIVN----NPFWIRNSPEKIF 129 (316) Q Consensus 83 fD~i~iR~-dPp~d~~yi~-~~~~Le~~~~~~~viN----~p~~i~~~~eKl~ 129 (316) .|+||+=. |++.-...+. .-.+++.+..+..++| +|+..+...+.+. T Consensus 62 ~divi~~v~~~~~v~~v~~~~~~i~~~~~~g~iiid~sT~~p~~~~~~~~~~~ 114 (299) T 1vpd_A 62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALK 114 (299) T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHH T ss_pred CCEEEEECCCHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH T ss_conf 99899975987899999958246873499999899899897689999999999 No 99 >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* Probab=27.20 E-value=28 Score=14.26 Aligned_cols=37 Identities=8% Similarity=-0.104 Sum_probs=20.8 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCC--CEEEEEEHHH Q ss_conf 96533189970998884847646799999999889--8899995412 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRG--YQIFHYTPDQ 45 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RG--heV~~~~~~d 45 (316) |-.||||+++.- =. -=+.++....+.| ++|.-++.+. T Consensus 2 ~~~m~kI~ViGl-----Gy---VGl~~a~~lA~~g~~~~V~g~Did~ 40 (467) T 2q3e_A 2 MFEIKKICCIGA-----GY---VGGPTCSVIAHMCPEIRVTVVDVNE 40 (467) T ss_dssp CCCCCEEEEECC-----ST---THHHHHHHHHHHCTTSEEEEECSCH T ss_pred CCCCCEEEEECC-----CH---HHHHHHHHHHHHCCCCEEEEEECCH T ss_conf 656877999887-----85---2699999999739998499998999 No 100 >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46 Probab=26.90 E-value=27 Score=14.39 Aligned_cols=10 Identities=0% Similarity=-0.333 Sum_probs=4.5 Q ss_pred CCHHHHHHCC Q ss_conf 1748875256 Q gi|254780696|r 116 NNPFWIRNSP 125 (316) Q Consensus 116 N~p~~i~~~~ 125 (316) +++.++..+. T Consensus 85 ~~~~a~~~l~ 94 (202) T 2fpo_A 85 MDRAVSQQLI 94 (202) T ss_dssp SCHHHHHHHH T ss_pred ECCCHHHHHH T ss_conf 7033356788 No 101 >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Probab=26.82 E-value=27 Score=14.34 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=25.2 Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 965331899709988848476467999999998898899995412 Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) |.+||||++..- ..--=..|+.+..++||++.++.... T Consensus 1 m~~~k~ILITG~-------tGfiG~~l~~~Ll~~g~~v~v~~~d~ 38 (348) T 1oc2_A 1 MSQFKNIIVTGG-------AGFIGSNFVHYVYNNHPDVHVTVLDK 38 (348) T ss_dssp --CCSEEEEETT-------TSHHHHHHHHHHHHHCTTCEEEEEEC T ss_pred CCCCCEEEEECC-------CCHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 999988999478-------86899999999997799739999837 No 102 >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Probab=26.78 E-value=26 Score=14.45 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=28.6 Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 65331899709988848476467999999998898899995412 Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) +|.+.||+++..+++ ....+---.+.++|+++|+++.++...+ T Consensus 5 ~~s~~Iglv~~~~~~-~f~~~i~~gi~~~~~~~gy~~~l~~~~~ 47 (289) T 1dbq_A 5 NHTKSIGLLATSSEA-AYFAEIIEAVEKNCFQKGYTLILGNAWN 47 (289) T ss_dssp ---CEEEEEESCTTS-HHHHHHHHHHHHHHHHHTCEEEEEECTT T ss_pred CCCCEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 999979999699988-8999999999999998699999996899 No 103 >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4} Probab=25.21 E-value=30 Score=14.03 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=17.0 Q ss_pred CHHHHHHHHHHCCCEEEEEE Q ss_conf 67999999998898899995 Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYT 42 (316) Q Consensus 23 TT~~Lm~eAq~RGheV~~~~ 42 (316) +-++|+++|.+||++|.++. T Consensus 31 ~G~~iA~~~~~~Ga~V~li~ 50 (232) T 2gk4_A 31 LGKIITETLLSAGYEVCLIT 50 (232) T ss_dssp HHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHCCCEEEEEE T ss_conf 99999999997899899996 No 104 >3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi GE5} PDB: 3iw3_A 1j31_A Probab=25.19 E-value=18 Score=15.48 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=26.0 Q ss_pred CCEEE-EEECCH-HHCCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 33189-970998-8848476467999999998898899995 Q gi|254780696|r 4 IRNIA-IQMNHI-STVKVKEDSTFAIALEAQVRGYQIFHYT 42 (316) Q Consensus 4 ~~kI~-fimDpi-~~i~~~~DTT~~Lm~eAq~RGheV~~~~ 42 (316) ||||| .|++|. ..++-.......++.+|.+.|-++-++. T Consensus 1 m~kva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadliv~P 41 (262) T 3ivz_A 1 MVKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLP 41 (262) T ss_dssp -CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECC T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECC T ss_conf 96999995888779999999999999999998879699968 No 105 >3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens} Probab=24.24 E-value=17 Score=15.65 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=19.5 Q ss_pred EEECCHHHHHHHHHHHH------------HHHHHCCCCCC Q ss_conf 00037245568888521------------43311168854 Q gi|254780696|r 141 LISRDITQITRFYLEMK------------DIIIKPLYGNG 168 (316) Q Consensus 141 ~vt~~~~~~~~f~~~~~------------~vViKPl~g~~ 168 (316) +|.++++++++|+.+|+ ++|.||++.-. T Consensus 14 lv~~~~~~l~~fl~~h~~~~~l~dias~~k~vykp~f~~y 53 (128) T 3da5_A 14 LVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRY 53 (128) T ss_dssp HTTSCHHHHHHHHHHTTTTEEEEETTSSSCCEEEECBCTT T ss_pred HHCCCHHHHHHHHHHHHCCEEHHHHCCHHHHHHHHHHHHH T ss_conf 9778989999999971043308864131245776889982 No 106 >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Probab=22.62 E-value=34 Score=13.70 Aligned_cols=34 Identities=9% Similarity=-0.050 Sum_probs=24.3 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 533189970998884847646799999999889889999541 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) +.|||+|+.== .-=..|++...+.||+|+.++.+ T Consensus 6 ~~mkIg~IGlG--------~MG~~mA~~L~~~G~~v~v~dr~ 39 (303) T 3g0o_A 6 TDFHVGIVGLG--------SMGMGAARSCLRAGLSTWGADLN 39 (303) T ss_dssp -CCEEEEECCS--------HHHHHHHHHHHHTTCEEEEECSC T ss_pred CCCEEEEEEHH--------HHHHHHHHHHHHCCCEEEEECCC T ss_conf 98869998427--------87899999999789948997899 No 107 >1wxc_B MELC; tyrosinase, binary complex, type-3 copper, oxidoreductase/metal transport complex; 1.20A {Streptomyces castaneoglobisporus} PDB: 1wx2_B 1wx4_B 1wx5_B 1wx3_B 2ahk_B 2ahl_B 2zmx_B 2zmy_B 2zmz_B 2zwd_B 2zwe_B* 2zwf_B* 2zwg_B* Probab=22.22 E-value=34 Score=13.65 Aligned_cols=43 Identities=7% Similarity=0.054 Sum_probs=31.0 Q ss_pred EEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH Q ss_conf 998998863212204568600000014731110077899999999999999 Q gi|254780696|r 214 LLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLR 264 (316) Q Consensus 214 ~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~ 264 (316) +.|||+++..|+| ..|+|.|- ..-|+.-+.-.+.+..+...|. T Consensus 74 V~IDGr~LHvMr~--ADGs~lS~------v~HYes~ptpl~aARAAVdeL~ 116 (134) T 1wxc_B 74 VFVDGVQLHVMRN--ADGSWISV------VSHYDPVPTPRAAARAAVDELQ 116 (134) T ss_dssp EEETTEEECEEEC--TTSCEEES------SSCSSCBSSHHHHHHHHHHHHT T ss_pred EEECCEEEEEEEC--CCCCEEEE------EECCCCCCCHHHHHHHHHHHHC T ss_conf 9988968466874--88867866------6415677998999999999736 No 108 >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* Probab=21.43 E-value=36 Score=13.55 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=17.2 Q ss_pred CHHHHHHHHHHCCCEEEEEE Q ss_conf 67999999998898899995 Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYT 42 (316) Q Consensus 23 TT~~Lm~eAq~RGheV~~~~ 42 (316) +-++|+++|.+||++|.++. T Consensus 36 ~G~~iA~~~~~~Ga~V~li~ 55 (226) T 1u7z_A 36 MGFAIAAAAARRGANVTLVS 55 (226) T ss_dssp HHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHCCCEEEEEE T ss_conf 99999868987898899997 No 109 >3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Probab=21.38 E-value=36 Score=13.54 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=27.6 Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 533189970998884847646799999999889889999541 Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) |.+||++++..++.- .-....-.+-.+|.+.|+++.++... T Consensus 1 k~~~Ig~~v~~~~~~-~~~~~~~~~~~~a~~~G~~~~v~~~~ 41 (313) T 3m9w_A 1 KEVKIGMAIDDLRLE-RWQKDRDIFVKKAESLGAKVFVQSAN 41 (313) T ss_dssp --CEEEEEESCCSSS-TTHHHHHHHHHHHHHTSCEEEEEECT T ss_pred CCCEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 971999994889998-99999999999999739989999599 No 110 >2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* Probab=20.40 E-value=37 Score=13.41 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=24.9 Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH Q ss_conf 33189970998884847646799999999889889999541 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316) |+||+|+. + ..--.+|++...+.||+|+.++.+ T Consensus 3 m~kIg~IG-----l---G~MG~~mA~~L~~~G~~v~v~dr~ 35 (302) T 2h78_A 3 MKQIAFIG-----L---GHMGAPMATNLLKAGYLLNVFDLV 35 (302) T ss_dssp CCEEEEEC-----C---STTHHHHHHHHHHTTCEEEEECSS T ss_pred CCEEEEEE-----E---HHHHHHHHHHHHHCCCEEEEECCC T ss_conf 48899982-----5---488999999999789978998499 No 111 >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.88A {Caenorhabditis elegans} Probab=20.21 E-value=38 Score=13.39 Aligned_cols=38 Identities=3% Similarity=-0.053 Sum_probs=21.0 Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHH Q ss_conf 65331899709988848476467999999998898899995412 Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316) Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316) -||+||+++. +=.-. .+++...+....|++|+-++.+. T Consensus 7 ~k~~KI~ViG-----lGyVG-l~~a~~~A~~g~~~~V~g~Did~ 44 (481) T 2o3j_A 7 GKVSKVVCVG-----AGYVG-GPTCAMIAHKCPHITVTVVDMNT 44 (481) T ss_dssp CCCCEEEEEC-----CSTTH-HHHHHHHHHHCTTSEEEEECSCH T ss_pred CCCCEEEEEC-----CCHHH-HHHHHHHHHCCCCCEEEEEECCH T ss_conf 6667599987-----77778-99999998149998599998999 No 112 >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* Probab=20.18 E-value=38 Score=13.38 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=22.7 Q ss_pred HCCCCCCCHHHHHHHHHHCCCEEEEEE Q ss_conf 848476467999999998898899995 Q gi|254780696|r 16 TVKVKEDSTFAIALEAQVRGYQIFHYT 42 (316) Q Consensus 16 ~i~~~~DTT~~Lm~eAq~RGheV~~~~ 42 (316) .+||.+++|..+++++.+-|-++--+. T Consensus 14 ~iDPd~e~s~~~i~~l~e~GaD~IEiG 40 (234) T 2f6u_A 14 KLDPDRTNTDEIIKAVADSGTDAVMIS 40 (234) T ss_dssp EECTTSCCCHHHHHHHHTTTCSEEEEC T ss_pred EECCCCCCHHHHHHHHHHCCCCEEEEC T ss_conf 658899758999999997599999987 No 113 >3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* Probab=20.08 E-value=38 Score=13.37 Aligned_cols=38 Identities=3% Similarity=-0.023 Sum_probs=22.6 Q ss_pred CCEEEEEECCHHHCCCCCCC--HH----HHHHHHHHC--CCEEEEEEHHHE Q ss_conf 33189970998884847646--79----999999988--988999954124 Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDS--TF----AIALEAQVR--GYQIFHYTPDQL 46 (316) Q Consensus 4 ~~kI~fimDpi~~i~~~~DT--T~----~Lm~eAq~R--GheV~~~~~~dL 46 (316) |+||+++.-. |.++. |. +++++++++ |++|.+++..+. T Consensus 1 M~kILvI~gs-----pr~~~S~s~~l~~~~~~~~~~~~~~~ev~~~dL~~~ 46 (212) T 3keg_A 1 MSRILAVHAS-----PRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212) T ss_dssp -CEEEEEECC-----SCSTTCHHHHHHHHHHHHHHHHSTTCEEEEEESSSS T ss_pred CCEEEEEECC-----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9759999838-----998877899999999999996199988999987446 Done!