RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62] (316 letters) >1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Length = 316 Score = 277 bits (710), Expect = 2e-75 Identities = 127/309 (41%), Positives = 200/309 (64%), Gaps = 2/309 (0%) Query: 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEK 65 + I M+ I+ + +K+DS+FA+ LEAQ RGY++ + LY+ + + A+T+ L++ + Sbjct: 3 KLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQN 62 Query: 66 KEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIV-NNPFWIRNS 124 E+++S E+ + L+ +DVIL+R+DPPF+ +I +TY+LE+ + ++ N P +R+ Sbjct: 63 YEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDC 122 Query: 125 PEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSS 184 EK+F FS+L P TL++R+ Q+ F+ + DII+KPL G GG +FR+ GD N Sbjct: 123 NEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGV 182 Query: 185 LIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGGKA 243 + E L E M Q+YLP I+DGDKR+L+++G+PV + RIP + R N+ AGG+ Sbjct: 183 IAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRG 242 Query: 244 ELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVA 303 E LT+ D I ++IG +L+E+GL F G+D+IGD +TEINVTSPTCIREI ++ Sbjct: 243 EPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSIT 302 Query: 304 SLFWDGIEK 312 + D IE Sbjct: 303 GMLMDAIEA 311 >1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422 Score = 82.4 bits (203), Expect = 1e-16 Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 27/244 (11%) Query: 67 EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYL---LEKINPETLIVNNPFWIRN 123 + K++ + D +LIRQ L L+ VN+ + N Sbjct: 165 DMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIP--SVNSLHSVYN 222 Query: 124 SPEKIFVT-----EFSELMPPTLISRDITQITR----FYLEMKDIIIKPLYGNGGTGVFR 174 +K +V +L D T +++K + + G G + Sbjct: 223 FCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVK 282 Query: 175 ITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNR 234 + +F + ++ + ++ D R+ + + S + + Sbjct: 283 VD-NQHDFQDIASVVA-LTKTYATAEPFIDAKY--DVRVQKIGQNYKAYMRTSVS-GNWK 337 Query: 235 SNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-----YITEINVTSPT 289 +N E ++ E GL ++ + +I E+ +S Sbjct: 338 TNTG-SAMLEQIAMSDRYKLWVDTCSEIF--GGLDICAVEALHGKDGRDHIIEVVGSSMP 394 Query: 290 CIRE 293 I + Sbjct: 395 LIGD 398 >2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle transport, structural genomics, structural genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens} Length = 344 Score = 64.0 bits (155), Expect = 4e-11 Identities = 34/307 (11%), Positives = 84/307 (27%), Gaps = 33/307 (10%) Query: 11 MNHISTVKVKEDSTFAIALEAQVRGY-QIFHYTPDQLYMRDSKIYAN-----TQPLSLDE 64 + + + + ++ + + FH + ++ + Sbjct: 6 EPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKV-NGEIEIRVEQAEFSELNLAAYVTG 64 Query: 65 KK---EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFW 120 Q G + + + D IL+RQ L+ + L VN+ + Sbjct: 65 GCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYS 124 Query: 121 IRNSPEKIFVTEFSEL----MPPTLISRDITQITRFYLE-----MKDIIIKPLYGNGGTG 171 + N K +V + P + +++K + + G G Sbjct: 125 VYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMG 184 Query: 172 VFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEV 231 ++ ++ I + ++++ D RI + A R Sbjct: 185 KIKVE--NQLDFQDITSVVAMAKTYATTEAFIDSKYDI--RIQKIGSN-YKAYMRTSISG 239 Query: 232 DNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-----YITEINVT 286 + ++N + ++ + E + + YI E+ + Sbjct: 240 NWKANTGSAMLEQVAMTERYR-LWVDSCSEMFGGLD--ICAVKAVHSKDGRDYIIEVMDS 296 Query: 287 SPTCIRE 293 S I E Sbjct: 297 SMPLIGE 303 >3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305 Score = 46.0 bits (108), Expect = 1e-05 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 19/204 (9%) Query: 113 LIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGV 172 + +S I VT + L T IIKP G G+ Sbjct: 90 KAEKYCENLGSSSRAIAVTSDKWELYKKLRGEVQVPQTSLRPLDCKFIIKPRTACAGEGI 149 Query: 173 FRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVD 232 ++ P+ + Q ++ I + + K + +I + Sbjct: 150 GFS---------------DEVPDGHIAQEFIEGINLSVSLAVGEDVKCLSVNEQIINNFR 194 Query: 233 NRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDY--ITEINVTSPTC 290 + ++ ++ + ++ R E + + V D + EIN T Sbjct: 195 YAGAVVPARISD--EVKREVVEEAVRAVECVEGLNGYVGVDIVYSDQPYVIEINARLTTP 252 Query: 291 IREIHRNGGENVASLFWDGIEKIK 314 + R G +VA L G K Sbjct: 253 VVAFSRAYGASVADLLAGGEVKHV 276 >1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280 Score = 44.9 bits (105), Expect = 2e-05 Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 45/274 (16%) Query: 26 AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDV 85 + A+ G +Y P+ L E+ +L + V Sbjct: 15 MLFERAEALGLPYKK------------VYVPALPMVLGER-----------PKELEGVTV 51 Query: 86 ILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE-----LMPPT 140 L R I +VN P I +K + Sbjct: 52 ALERCVSQSRGLAAARYLTALGI----PVVNRPEVIEACGDKWATSVALAKAGLPQPKTA 107 Query: 141 LISRDITQITRFYLEMKDIIIKPLYGNGGTG--VFRITLGDRNFSSLIEMLFEKYPEPLM 198 L + + +++KP+ G+ G +L + Sbjct: 108 LATDREEALRLMEAFGYPVVLKPVIGSWGRLXXXXXXXXXXXXXXXXXXVLGGFQHQLFY 167 Query: 199 IQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKR 258 IQ Y+ + D R+ ++ + + A +N GG+AE LT+ + + Sbjct: 168 IQEYVEK-PGRDIRVFVVGERAIAA--IYRRSAHWITNTARGGQAENCPLTEEVARLSVK 224 Query: 259 IGESLRERGLFFTGIDVI----GDYITEINVTSP 288 E++ G +D+ G + E+N + Sbjct: 225 AAEAV---GGGVVAVDLFESERGLLVNEVN-HTM 254 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.9 bits (106), Expect = 2e-05 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 92/239 (38%) Query: 1 MKKIRNI---AIQMNHISTVK--VKEDSTFAIALEAQVRGYQIFHYT--PDQLY-----M 48 M I N+ +Q ++++ + I+L V G + + P LY + Sbjct: 338 MLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISL---VNGAKNLVVSGPPQSLYGLNLTL 393 Query: 49 RDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD-VILIRQDP---PFNMHYITSTY- 103 R +K P LD+ + I S+ R P PF+ H + Sbjct: 394 RKAKA-----PSGLDQSR-----------IPFSERKLKFSNRFLPVASPFHSHLLVPASD 437 Query: 104 -LLEKINPETLIVNNPFWIRNSPEKIFV--T-------EFSELMPPTLISRDITQITRFY 153 + + + + +I V T S ++ R + I R Sbjct: 438 LINKDLVKNNVS------FNAKDIQIPVYDTFDGSDLRVLSG----SISERIVDCIIR-- 485 Query: 154 LEMKD-----------IIIKPLYGNG--------------GTGVFRITLG---DRNFSS 184 I+ +G G GTGV R+ + D N Sbjct: 486 -LPVKWETTTQFKATHIL---DFGPGGASGLGVLTHRNKDGTGV-RVIVAGTLDINPDD 539 Score = 38.0 bits (88), Expect = 0.003 Identities = 58/352 (16%), Positives = 99/352 (28%), Gaps = 141/352 (40%) Query: 55 ANTQPLSLDEKK-EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL 113 +T+PL+L E + SQ+ ++ FN T E Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQL-----QEQ--FNKILPEPT--------EGF 48 Query: 114 IVNNPFWIRNSPEKI------FVTEFSELMPPTLISRDITQI--TRF---YLEMKDI--I 160 ++ +P ++ +V+ E + + T F YLE DI + Sbjct: 49 AADDEP---TTPAELVGKFLGYVSSLVEPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHAL 104 Query: 161 IKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKP 220 L T + + +N+ + M + + S L Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--SNS------------ALFR--- 147 Query: 221 VGAVNRIPSEVDNRSNIHA--GGK-------AELTKL--TKIDL--DICKRIGESLRERG 267 AV + + + A GG+ EL L T L D+ K E+L E Sbjct: 148 --AVG------EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-- 197 Query: 268 L---------FFT-GIDVIG-----------DYITEINVTSP------------TC---- 290 L FT G++++ DY+ I ++ P T Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257 Query: 291 -----IREI------HRNG----------------GENVAS----LFWDGIE 311 +R H G +V LF+ G+ Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309 >2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A Length = 619 Score = 37.9 bits (88), Expect = 0.003 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 19/134 (14%) Query: 103 YLLEKINPETLIVNNPFWIRNSPEKIF------VTEFSELMPPTLISRDITQITRFYLEM 156 L++ + ++V P W K + + T + + L Sbjct: 474 RLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVND------ELVK 527 Query: 157 KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL- 215 +KP+ G G+ + L + L + + + + Q + K I + Sbjct: 528 TGYAVKPIAGRCGSNI---DLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVC 584 Query: 216 ---LNGKPVGAVNR 226 + G G R Sbjct: 585 TFTVGGNYGGTCLR 598 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 32.7 bits (73), Expect = 0.12 Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 10/34 (29%) Query: 1 MKKIRNIAIQMNHISTVKV-KEDSTFAIALEAQV 33 +KK++ +++K+ +DS A+A++A + Sbjct: 22 LKKLQ---------ASLKLYADDSAPALAIKATM 46 >2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A Length = 652 Score = 32.2 bits (73), Expect = 0.17 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 11/125 (8%) Query: 104 LLEKINPETLIVNNPFWIRNSPEKIFVTEFSELMP--PTLISRDITQITRFYLEMKDIII 161 L + ++ P W K + P P ++ + L Sbjct: 490 DLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTD--ELRKHGYAK 547 Query: 162 KPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL----LN 217 KP+ G G+ V + + E + ++ Q + D ++ + Sbjct: 548 KPIVGRVGSNV---IITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIG 604 Query: 218 GKPVG 222 G Sbjct: 605 DAFSG 609 >1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica hm-1} PDB: 1z2o_X* 1z2p_X* Length = 324 Score = 30.5 bits (68), Expect = 0.54 Identities = 30/258 (11%), Positives = 74/258 (28%), Gaps = 51/258 (19%) Query: 75 EKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWI-----RNSPEKIF 129 ++ D +I R P M Y K +P+ L + + R + Sbjct: 49 TELPDKEPNAIITKRTHPVGKMADEMRKYE--KDHPKVLFLESSAIHDMMSSREEINALL 106 Query: 130 VTEFSELMPPTLISRDITQITRFYLEMK---DIIIKPLYGNGGTGVFRITLGD------- 179 + + +P + + ++ + + I+KP G ++ + Sbjct: 107 -IKNNIPIPNSFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD 165 Query: 180 -------RNFSSLIEMLFEKY---------PEPLMIQSYLPQIRDGDKRILLLNGKPVGA 223 +++ + + + + + + I+ D L Sbjct: 166 IHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWP 225 Query: 224 VNRIPSEVDNRSNIHAGGKAELT-------KLTKIDLDICKRIGESLRERGLFFTGIDVI 276 I + ++ + G L D+ ++ +L G+ GID I Sbjct: 226 EGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCAL---GVQLCGIDFI 282 Query: 277 GD------YITEINVTSP 288 + + ++N P Sbjct: 283 KENEQGNPLVVDVN-VFP 299 >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetical protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 588 Score = 30.2 bits (68), Expect = 0.66 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 76 KIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPF 119 KI +S+ VI I++D + + T LLE+ N ++ Sbjct: 543 KICPVSKQRVIDIKRDDLNDYGWFTRG-LLERFNEISVYCGTTL 585 >1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural genomics, PSI, protein structure initiative; HET: COA; 3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1 Length = 163 Score = 29.2 bits (65), Expect = 1.2 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 9/93 (9%) Query: 174 RITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG--AVNRIPSEV 231 RI LG+ L ++L P ++ YL G+ + G + + + Sbjct: 7 RIELGEETNDELYDLLLLADPSKDIVDEYLE---RGECYTAWAGDELAGVYVLLKTRPQT 63 Query: 232 DNRSNI----HAGGKAELTKLTKIDLDICKRIG 260 NI K +L ++ K++G Sbjct: 64 VEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLG 96 >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor 2-oxoglutarate, asparaginyl hydroxylase,; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 1h2k_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1mze_A* 1mzf_A* 1iz3_A Length = 349 Score = 29.1 bits (64), Expect = 1.4 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 13/148 (8%) Query: 12 NHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSK----IYANTQPLSLDEKKE 67 +++ E F ++ R + LY + + D ++ Sbjct: 193 GNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERF 252 Query: 68 QYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEK 127 + + DV+ I P + H+I S + + + FW + +P Sbjct: 253 PNFQNVVGYETVVGPGDVLYI---PMYWWHHIES------LLNGGITITVNFWYKGAPTP 303 Query: 128 IFVTEFSELMPPTLISRDITQITRFYLE 155 + + I R+I ++ L Sbjct: 304 KRIEYPLKAHQKVAIMRNIEKMLGEALG 331 >1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2 Length = 319 Score = 28.3 bits (63), Expect = 2.4 Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 5/52 (9%) Query: 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEML 189 ++S +T+ + K +YG F + + D + +++ L Sbjct: 235 QVQILSNALTKAGQAAANAK-----TVYGENTHRTFSVVVDDCSMRAVLRRL 281 >2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A* Length = 184 Score = 27.3 bits (60), Expect = 5.0 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%) Query: 21 EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEK-----KEQYYSLGEE 75 D I E H TPD ++ +Y +S+ + ++YY L + Sbjct: 57 IDIILDIRPEVDPLTIDAPHITPDNYLYINNVLYIIDYKVSVSNESSVITYDKYYELTRD 116 Query: 76 KIIDLS-QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVN 116 LS +++++IR DP +I S E + +N Sbjct: 117 ISDRLSIPIEIVIIRIDPVSRDLHINSDRFKELYPTIVVDIN 158 >1g5g_A Fusion protein; NDV, paramyxovirus, viral protein; HET: NAG BMA; 3.30A {Newcastle disease virus} SCOP: f.12.1.1 h.3.2.1 Length = 481 Score = 27.0 bits (59), Expect = 5.2 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 22/91 (24%) Query: 128 IFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLY----GNGGTGVFRITLGDRNFS 183 +++TE + + P + S +TQ+T I+ LY GN + ++ +G+ S Sbjct: 181 LYLTELTTVFGPQITSPALTQLT----------IQALYNLAGGNMDYLLTKLGVGNNQLS 230 Query: 184 SLIE--------MLFEKYPEPLMIQSYLPQI 206 SLI +L++ + L IQ LP + Sbjct: 231 SLISSGLITGNPILYDSQTQLLGIQVTLPSV 261 >2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* Length = 910 Score = 27.0 bits (59), Expect = 6.3 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 20/93 (21%) Query: 151 RFYLEMKDIIIKPLYG--------NGGTGVFRITL------GDRNFSSLIEMLF---EKY 193 +FY IKP+ G G + +T+ G +N + LI + Sbjct: 52 KFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111 Query: 194 PEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNR 226 P++ + +L ++ +G ++LL+G +G V R Sbjct: 112 AGPIIDRDWLIELNEG---LILLSGGRMGDVGR 141 >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A Length = 531 Score = 26.5 bits (58), Expect = 8.8 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 116 NNPFWIRNSPEKIFVTEFSELMPPTLIS-RDITQITRFYLEMKDI 159 FWI K FV + + P + D+ + Y++++++ Sbjct: 298 TPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNV 342 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.140 0.403 Gapped Lambda K H 0.267 0.0428 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,859,593 Number of extensions: 140839 Number of successful extensions: 414 Number of sequences better than 10.0: 1 Number of HSP's gapped: 408 Number of HSP's successfully gapped: 23 Length of query: 316 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 224 Effective length of database: 3,462,782 Effective search space: 775663168 Effective search space used: 775663168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.5 bits)