RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780696|ref|YP_003065109.1| glutathione synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (316 letters)



>1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia
           coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A
           1glv_A
          Length = 316

 Score =  277 bits (710), Expect = 2e-75
 Identities = 127/309 (41%), Positives = 200/309 (64%), Gaps = 2/309 (0%)

Query: 6   NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEK 65
            + I M+ I+ + +K+DS+FA+ LEAQ RGY++ +     LY+ + +  A+T+ L++ + 
Sbjct: 3   KLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQN 62

Query: 66  KEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIV-NNPFWIRNS 124
            E+++S   E+ + L+ +DVIL+R+DPPF+  +I +TY+LE+   +  ++ N P  +R+ 
Sbjct: 63  YEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDC 122

Query: 125 PEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSS 184
            EK+F   FS+L P TL++R+  Q+  F+ +  DII+KPL G GG  +FR+  GD N   
Sbjct: 123 NEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGV 182

Query: 185 LIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGGKA 243
           + E L E      M Q+YLP I+DGDKR+L+++G+PV   + RIP   + R N+ AGG+ 
Sbjct: 183 IAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRG 242

Query: 244 ELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVA 303
           E   LT+ D  I ++IG +L+E+GL F G+D+IGD +TEINVTSPTCIREI      ++ 
Sbjct: 243 EPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSIT 302

Query: 304 SLFWDGIEK 312
            +  D IE 
Sbjct: 303 GMLMDAIEA 311


>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
           protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
           c.30.1.5 d.142.1.3 PDB: 1px2_A*
          Length = 422

 Score = 82.4 bits (203), Expect = 1e-16
 Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 27/244 (11%)

Query: 67  EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYL---LEKINPETLIVNNPFWIRN 123
           +        K++   + D +LIRQ             L   L+        VN+   + N
Sbjct: 165 DMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIP--SVNSLHSVYN 222

Query: 124 SPEKIFVT-----EFSELMPPTLISRDITQITR----FYLEMKDIIIKPLYGNGGTGVFR 174
             +K +V         +L        D T               +++K  + + G G  +
Sbjct: 223 FCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVK 282

Query: 175 ITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNR 234
           +     +F  +  ++          + ++      D R+  +       +    S  + +
Sbjct: 283 VD-NQHDFQDIASVVA-LTKTYATAEPFIDAKY--DVRVQKIGQNYKAYMRTSVS-GNWK 337

Query: 235 SNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-----YITEINVTSPT 289
           +N       E   ++           E     GL    ++ +       +I E+  +S  
Sbjct: 338 TNTG-SAMLEQIAMSDRYKLWVDTCSEIF--GGLDICAVEALHGKDGRDHIIEVVGSSMP 394

Query: 290 CIRE 293
            I +
Sbjct: 395 LIGD 398


>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
           vesicle transport, structural genomics, structural
           genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens}
          Length = 344

 Score = 64.0 bits (155), Expect = 4e-11
 Identities = 34/307 (11%), Positives = 84/307 (27%), Gaps = 33/307 (10%)

Query: 11  MNHISTVKVKEDSTFAIALEAQVRGY-QIFHYTPDQLYMRDSKIYAN-----TQPLSLDE 64
                +  + +     + ++     + + FH         + ++             +  
Sbjct: 6   EPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKV-NGEIEIRVEQAEFSELNLAAYVTG 64

Query: 65  KK---EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFW 120
                 Q    G + +    + D IL+RQ             L+  +    L  VN+ + 
Sbjct: 65  GCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYS 124

Query: 121 IRNSPEKIFVTEFSEL----MPPTLISRDITQITRFYLE-----MKDIIIKPLYGNGGTG 171
           + N   K +V          + P             +          +++K  + + G G
Sbjct: 125 VYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMG 184

Query: 172 VFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEV 231
             ++   ++     I  +          ++++    D   RI  +      A  R     
Sbjct: 185 KIKVE--NQLDFQDITSVVAMAKTYATTEAFIDSKYDI--RIQKIGSN-YKAYMRTSISG 239

Query: 232 DNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-----YITEINVT 286
           + ++N  +    ++    +          E           +  +       YI E+  +
Sbjct: 240 NWKANTGSAMLEQVAMTERYR-LWVDSCSEMFGGLD--ICAVKAVHSKDGRDYIIEVMDS 296

Query: 287 SPTCIRE 293
           S   I E
Sbjct: 297 SMPLIGE 303


>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
           nysgrc., structural genomics, protein structure
           initiative; 1.87A {Archaeoglobus fulgidus}
          Length = 305

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 19/204 (9%)

Query: 113 LIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGV 172
                   + +S   I VT     +   L        T         IIKP     G G+
Sbjct: 90  KAEKYCENLGSSSRAIAVTSDKWELYKKLRGEVQVPQTSLRPLDCKFIIKPRTACAGEGI 149

Query: 173 FRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVD 232
                             ++ P+  + Q ++  I       +  + K +    +I +   
Sbjct: 150 GFS---------------DEVPDGHIAQEFIEGINLSVSLAVGEDVKCLSVNEQIINNFR 194

Query: 233 NRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDY--ITEINVTSPTC 290
               +     ++  ++ +  ++   R  E +     +     V  D   + EIN    T 
Sbjct: 195 YAGAVVPARISD--EVKREVVEEAVRAVECVEGLNGYVGVDIVYSDQPYVIEINARLTTP 252

Query: 291 IREIHRNGGENVASLFWDGIEKIK 314
           +    R  G +VA L   G  K  
Sbjct: 253 VVAFSRAYGASVADLLAGGEVKHV 276


>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; 2.00A {Thermus thermophilus} SCOP:
           c.30.1.6 d.142.1.7 PDB: 1uc9_A*
          Length = 280

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 45/274 (16%)

Query: 26  AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDV 85
            +   A+  G                 +Y    P+ L E+             +L  + V
Sbjct: 15  MLFERAEALGLPYKK------------VYVPALPMVLGER-----------PKELEGVTV 51

Query: 86  ILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE-----LMPPT 140
            L R                  I     +VN P  I    +K   +              
Sbjct: 52  ALERCVSQSRGLAAARYLTALGI----PVVNRPEVIEACGDKWATSVALAKAGLPQPKTA 107

Query: 141 LISRDITQITRFYLEMKDIIIKPLYGNGGTG--VFRITLGDRNFSSLIEMLFEKYPEPLM 198
           L +     +         +++KP+ G+ G                    +L     +   
Sbjct: 108 LATDREEALRLMEAFGYPVVLKPVIGSWGRLXXXXXXXXXXXXXXXXXXVLGGFQHQLFY 167

Query: 199 IQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKR 258
           IQ Y+ +    D R+ ++  + + A           +N   GG+AE   LT+    +  +
Sbjct: 168 IQEYVEK-PGRDIRVFVVGERAIAA--IYRRSAHWITNTARGGQAENCPLTEEVARLSVK 224

Query: 259 IGESLRERGLFFTGIDVI----GDYITEINVTSP 288
             E++   G     +D+     G  + E+N  + 
Sbjct: 225 AAEAV---GGGVVAVDLFESERGLLVNEVN-HTM 254


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 92/239 (38%)

Query: 1   MKKIRNI---AIQMNHISTVK--VKEDSTFAIALEAQVRGYQIFHYT--PDQLY-----M 48
           M  I N+    +Q ++++     +       I+L   V G +    +  P  LY     +
Sbjct: 338 MLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISL---VNGAKNLVVSGPPQSLYGLNLTL 393

Query: 49  RDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD-VILIRQDP---PFNMHYITSTY- 103
           R +K      P  LD+ +           I  S+       R  P   PF+ H +     
Sbjct: 394 RKAKA-----PSGLDQSR-----------IPFSERKLKFSNRFLPVASPFHSHLLVPASD 437

Query: 104 -LLEKINPETLIVNNPFWIRNSPEKIFV--T-------EFSELMPPTLISRDITQITRFY 153
            + + +    +             +I V  T         S     ++  R +  I R  
Sbjct: 438 LINKDLVKNNVS------FNAKDIQIPVYDTFDGSDLRVLSG----SISERIVDCIIR-- 485

Query: 154 LEMKD-----------IIIKPLYGNG--------------GTGVFRITLG---DRNFSS 184
                           I+    +G G              GTGV R+ +    D N   
Sbjct: 486 -LPVKWETTTQFKATHIL---DFGPGGASGLGVLTHRNKDGTGV-RVIVAGTLDINPDD 539



 Score = 38.0 bits (88), Expect = 0.003
 Identities = 58/352 (16%), Positives = 99/352 (28%), Gaps = 141/352 (40%)

Query: 55  ANTQPLSLDEKK-EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL 113
            +T+PL+L     E    +        SQ+     ++   FN      T        E  
Sbjct: 4   YSTRPLTLSHGSLEHVLLVPTASFFIASQL-----QEQ--FNKILPEPT--------EGF 48

Query: 114 IVNNPFWIRNSPEKI------FVTEFSELMPPTLISRDITQI--TRF---YLEMKDI--I 160
             ++      +P ++      +V+   E          +  +  T F   YLE  DI  +
Sbjct: 49  AADDEP---TTPAELVGKFLGYVSSLVEPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHAL 104

Query: 161 IKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKP 220
              L     T + +     +N+ +   M    + +     S             L     
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--SNS------------ALFR--- 147

Query: 221 VGAVNRIPSEVDNRSNIHA--GGK-------AELTKL--TKIDL--DICKRIGESLRERG 267
             AV       +  + + A  GG+        EL  L  T   L  D+ K   E+L E  
Sbjct: 148 --AVG------EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-- 197

Query: 268 L---------FFT-GIDVIG-----------DYITEINVTSP------------TC---- 290
           L          FT G++++            DY+  I ++ P            T     
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257

Query: 291 -----IREI------HRNG----------------GENVAS----LFWDGIE 311
                +R        H  G                  +V      LF+ G+ 
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309


>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase,
           hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP:
           c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A*
           2iob_A
          Length = 619

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 19/134 (14%)

Query: 103 YLLEKINPETLIVNNPFWIRNSPEKIF------VTEFSELMPPTLISRDITQITRFYLEM 156
            L++ +    ++V  P W      K        +      +  T  + +        L  
Sbjct: 474 RLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVND------ELVK 527

Query: 157 KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL- 215
               +KP+ G  G+ +    L   +   L +   +   +  + Q      +   K I + 
Sbjct: 528 TGYAVKPIAGRCGSNI---DLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVC 584

Query: 216 ---LNGKPVGAVNR 226
              + G   G   R
Sbjct: 585 TFTVGGNYGGTCLR 598


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.7 bits (73), Expect = 0.12
 Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 10/34 (29%)

Query: 1  MKKIRNIAIQMNHISTVKV-KEDSTFAIALEAQV 33
          +KK++         +++K+  +DS  A+A++A +
Sbjct: 22 LKKLQ---------ASLKLYADDSAPALAIKATM 46


>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB:
           2vps_A 2vpm_A
          Length = 652

 Score = 32.2 bits (73), Expect = 0.17
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 11/125 (8%)

Query: 104 LLEKINPETLIVNNPFWIRNSPEKIFVTEFSELMP--PTLISRDITQITRFYLEMKDIII 161
            L   +   ++   P W      K  +       P  P ++  +        L       
Sbjct: 490 DLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTD--ELRKHGYAK 547

Query: 162 KPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL----LN 217
           KP+ G  G+ V    +   +     E   +     ++ Q      +  D   ++    + 
Sbjct: 548 KPIVGRVGSNV---IITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIG 604

Query: 218 GKPVG 222
               G
Sbjct: 605 DAFSG 609


>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
           ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
           histolytica hm-1} PDB: 1z2o_X* 1z2p_X*
          Length = 324

 Score = 30.5 bits (68), Expect = 0.54
 Identities = 30/258 (11%), Positives = 74/258 (28%), Gaps = 51/258 (19%)

Query: 75  EKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWI-----RNSPEKIF 129
            ++ D     +I  R  P   M      Y   K +P+ L + +         R     + 
Sbjct: 49  TELPDKEPNAIITKRTHPVGKMADEMRKYE--KDHPKVLFLESSAIHDMMSSREEINALL 106

Query: 130 VTEFSELMPPTLISRDITQITRFYLEMK---DIIIKPLYGNGGTGVFRITLGD------- 179
             + +  +P +   +   ++ +     +     I+KP    G     ++ +         
Sbjct: 107 -IKNNIPIPNSFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD 165

Query: 180 -------RNFSSLIEMLFEKY---------PEPLMIQSYLPQIRDGDKRILLLNGKPVGA 223
                  +++ +    + + +             +   +   I+  D     L       
Sbjct: 166 IHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWP 225

Query: 224 VNRIPSEVDNRSNIHAGGKAELT-------KLTKIDLDICKRIGESLRERGLFFTGIDVI 276
              I  +    ++ +  G   L               D+  ++  +L   G+   GID I
Sbjct: 226 EGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCAL---GVQLCGIDFI 282

Query: 277 GD------YITEINVTSP 288
            +       + ++N   P
Sbjct: 283 KENEQGNPLVVDVN-VFP 299


>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
           2 promoters, transcription, hypothetical protein,
           preinitiation complex, yeast RNA polymerase III; 3.2A
           {Saccharomyces cerevisiae}
          Length = 588

 Score = 30.2 bits (68), Expect = 0.66
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 76  KIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPF 119
           KI  +S+  VI I++D   +  + T   LLE+ N  ++      
Sbjct: 543 KICPVSKQRVIDIKRDDLNDYGWFTRG-LLERFNEISVYCGTTL 585


>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural
           genomics, PSI, protein structure initiative; HET: COA;
           3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
          Length = 163

 Score = 29.2 bits (65), Expect = 1.2
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 174 RITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG--AVNRIPSEV 231
           RI LG+     L ++L    P   ++  YL     G+        +  G   + +   + 
Sbjct: 7   RIELGEETNDELYDLLLLADPSKDIVDEYLE---RGECYTAWAGDELAGVYVLLKTRPQT 63

Query: 232 DNRSNI----HAGGKAELTKLTKIDLDICKRIG 260
               NI        K    +L    ++  K++G
Sbjct: 64  VEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLG 96


>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
           oxygenase, transcription, inhibitor 2-oxoglutarate,
           asparaginyl hydroxylase,; HET: AKG; 2.10A {Homo sapiens}
           PDB: 2ilm_A* 1h2k_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
           2cgn_A 2cgo_A* 1mze_A* 1mzf_A* 1iz3_A
          Length = 349

 Score = 29.1 bits (64), Expect = 1.4
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 13/148 (8%)

Query: 12  NHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSK----IYANTQPLSLDEKKE 67
            +++     E   F   ++   R         + LY           +     + D ++ 
Sbjct: 193 GNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERF 252

Query: 68  QYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEK 127
             +         +   DV+ I   P +  H+I S      +    + +   FW + +P  
Sbjct: 253 PNFQNVVGYETVVGPGDVLYI---PMYWWHHIES------LLNGGITITVNFWYKGAPTP 303

Query: 128 IFVTEFSELMPPTLISRDITQITRFYLE 155
             +    +      I R+I ++    L 
Sbjct: 304 KRIEYPLKAHQKVAIMRNIEKMLGEALG 331


>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA
           synthesis, sliding clamps, PCNA, processivity, DNA
           binding protein/transferase complex; HET: DNA; 2.70A
           {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
          Length = 319

 Score = 28.3 bits (63), Expect = 2.4
 Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEML 189
              ++S  +T+  +     K      +YG      F + + D +  +++  L
Sbjct: 235 QVQILSNALTKAGQAAANAK-----TVYGENTHRTFSVVVDDCSMRAVLRRL 281


>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae,
           orthobunyavirus, aedes triseriatu hydrolase; 2.20A
           {Bunyavirus la crosse} PDB: 2xi7_A*
          Length = 184

 Score = 27.3 bits (60), Expect = 5.0
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 21  EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEK-----KEQYYSLGEE 75
            D    I  E         H TPD     ++ +Y     +S+  +      ++YY L  +
Sbjct: 57  IDIILDIRPEVDPLTIDAPHITPDNYLYINNVLYIIDYKVSVSNESSVITYDKYYELTRD 116

Query: 76  KIIDLS-QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVN 116
               LS  +++++IR DP     +I S    E      + +N
Sbjct: 117 ISDRLSIPIEIVIIRIDPVSRDLHINSDRFKELYPTIVVDIN 158


>1g5g_A Fusion protein; NDV, paramyxovirus, viral protein; HET: NAG BMA;
           3.30A {Newcastle disease virus} SCOP: f.12.1.1 h.3.2.1
          Length = 481

 Score = 27.0 bits (59), Expect = 5.2
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 22/91 (24%)

Query: 128 IFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLY----GNGGTGVFRITLGDRNFS 183
           +++TE + +  P + S  +TQ+T          I+ LY    GN    + ++ +G+   S
Sbjct: 181 LYLTELTTVFGPQITSPALTQLT----------IQALYNLAGGNMDYLLTKLGVGNNQLS 230

Query: 184 SLIE--------MLFEKYPEPLMIQSYLPQI 206
           SLI         +L++   + L IQ  LP +
Sbjct: 231 SLISSGLITGNPILYDSQTQLLGIQVTLPSV 261


>2hnh_A DNA polymerase III alpha subunit; DNA replication,
           nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A
           {Escherichia coli} PDB: 2hqa_A*
          Length = 910

 Score = 27.0 bits (59), Expect = 6.3
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 20/93 (21%)

Query: 151 RFYLEMKDIIIKPLYG--------NGGTGVFRITL------GDRNFSSLIEMLF---EKY 193
           +FY       IKP+ G          G  +  +T+      G +N + LI   +      
Sbjct: 52  KFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 194 PEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNR 226
             P++ + +L ++ +G   ++LL+G  +G V R
Sbjct: 112 AGPIIDRDWLIELNEG---LILLSGGRMGDVGR 141


>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
           2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
           3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A
          Length = 531

 Score = 26.5 bits (58), Expect = 8.8
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 116 NNPFWIRNSPEKIFVTEFSELMPPTLIS-RDITQITRFYLEMKDI 159
              FWI     K FV +  +   P   +  D+   +  Y++++++
Sbjct: 298 TPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNV 342


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.140    0.403 

Gapped
Lambda     K      H
   0.267   0.0428    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,859,593
Number of extensions: 140839
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 23
Length of query: 316
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 224
Effective length of database: 3,462,782
Effective search space: 775663168
Effective search space used: 775663168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)