HHsearch alignment for GI: 254780697 and conserved domain: pfam01741
>pfam01741 MscL Large-conductance mechanosensitive channel, MscL.
Probab=100.00 E-value=0 Score=311.25 Aligned_cols=124 Identities=46% Similarity=0.827 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf 78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA 86 (141)
Q Consensus 7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~ 86 (141)
T Consensus 1 mlkeFK~Fi~rGNVidLAVgvIIG~AF~~iV~slv~~ii~PlI~~~~g-~~~~~~~~~~~~~~----------~~~~~i~ 69 (127)
T pfam01741 1 MLKEFKEFAMRGNVVDLAVGVVIGGAFGKIVSSLVADIIMPLIGRLLG-GVDFSDLSITLIGD----------VGAVTLN 69 (127)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHCCCEECCC----------CCCHHEE
T ss_conf 917899999815789999999999889999999999999998998727-87876610000256----------7630120
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9899999999999999999999999998412348---898683569999999996409
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN---VKNPPAEVQLLTEIRDLLQKN 141 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e~---~~~~~~e~~LL~EIRDlLkkn 141 (141)
T Consensus 70 yG~fl~avI~FlIia~vvFl~Vk~~nk~~~k~~~~~~~~~~~~e~~LL~EIRDlLkks 127 (127)
T pfam01741 70 YGLFIQAVINFLIIAFAIFLVIKAINKLRKKEEVEEAEAVPDAQEVLLTEIRDLLKQT 127 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999998723678999988981889999999987059