Query gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs 109 out of 1037
Neff 4.9
Searched_HMMs 23785
Date Tue May 31 17:01:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780697.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oar_A Large-conductance mecha 100.0 0 0 307.7 11.8 127 2-140 19-146 (174)
2 3hzq_A Large-conductance mecha 100.0 2.9E-35 1.2E-39 234.0 4.0 99 2-118 16-114 (114)
3 2zy9_A Mg2+ transporter MGTE; 61.2 5.6 0.00023 19.1 3.1 13 43-55 340-352 (473)
4 1q1v_A DEK protein; winged-hel 54.8 7.5 0.00031 18.4 2.8 21 120-140 7-27 (70)
5 2rdd_B UPF0092 membrane protei 38.4 19 0.00081 15.9 2.8 29 92-120 4-33 (37)
6 1mz9_A Cartilage oligomeric ma 28.0 22 0.00092 15.5 1.7 13 128-140 15-27 (45)
7 3m91_B Prokaryotic ubiquitin-l 15.2 55 0.0023 13.1 1.8 13 129-141 18-30 (44)
8 3dl8_C SECE; RECA-type ATPase 12.7 65 0.0027 12.7 3.9 54 1-54 1-60 (65)
9 3bo0_B Preprotein translocase 12.5 65 0.0028 12.6 4.2 53 2-54 1-62 (65)
10 1use_A VAsp, vasodilator-stimu 12.2 67 0.0028 12.6 1.7 13 128-140 14-26 (45)
No 1
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=100.00 E-value=0 Score=307.69 Aligned_cols=127 Identities=33% Similarity=0.523 Sum_probs=109.3
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCC
Q ss_conf 53012789999999836669999999999989999999999766667787504656744325762766663112321016
Q gi|254780697|r 2 FQGTPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQ 81 (141)
Q Consensus 2 ~k~~~mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~ 81 (141)
.|.++||||||+|++||||+|||||||||+||++||+|||+|||||+||++.++ .+++.+.+.+ ...+
T Consensus 19 ~~~k~mlkeFKeFi~rGNViDLAVgVIIGaAF~~IV~SlV~dIImPlIg~i~~~-~~~~~~~l~~-----------~~~~ 86 (174)
T 2oar_A 19 DDDKHMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVN-AQSDVGILRI-----------GIGG 86 (174)
T ss_dssp -----CHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEECCCCTT-----------TCCS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHEE-----------ECCC
T ss_conf 899999999999997287677779999999899999999987542134203457-6320233112-----------1158
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 60000989999999999999999-999999999841234889868356999999999640
Q gi|254780697|r 82 GAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLVKQTENVKNPPAEVQLLTEIRDLLQK 140 (141)
Q Consensus 82 ~~~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~~~~e~~~~~~~e~~LL~EIRDlLkk 140 (141)
+..+.||+|++++|||+|+||++ |+++++|||+++++|+++++|+|++||+||||+|||
T Consensus 87 ~~~i~yG~Fl~aiInFlIiA~vvyFlivk~~nklk~k~e~~~~~~~e~~LL~EIRDlLk~ 146 (174)
T 2oar_A 87 GQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEVEQPGDTQVVLLTEIRDLLAQ 146 (174)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 704539899999999999999999999999998622678998789478999999999997
No 2
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.9e-35 Score=234.02 Aligned_cols=99 Identities=35% Similarity=0.759 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCC
Q ss_conf 53012789999999836669999999999989999999999766667787504656744325762766663112321016
Q gi|254780697|r 2 FQGTPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQ 81 (141)
Q Consensus 2 ~k~~~mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~ 81 (141)
.|+.+|++|||||++||||+|||||||||+||+++|+|||+|+|||+|++++| ++|+++.+ .
T Consensus 16 ~k~~~mlkeFK~Fi~rGNVidLAVgvIiG~AF~aiV~slV~diimPlI~~~~g-~~~~~~~~-----------------~ 77 (114)
T 3hzq_A 16 PRGSHMLKEFKEFALKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKIFG-SVDFAKEW-----------------S 77 (114)
T ss_dssp -----CCSSSSCCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSS-CSCCCTTC-----------------C
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHC-----------------C
T ss_conf 77879999999999707779999999999999999999999988888888607-87500000-----------------2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6000098999999999999999999999999984123
Q gi|254780697|r 82 GAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQT 118 (141)
Q Consensus 82 ~~~i~yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~ 118 (141)
...++||+|++++|||+|+|+++|+++|++||+++|+
T Consensus 78 ~~~i~yG~fl~a~I~FlIiA~vvF~ivk~~nkl~kke 114 (114)
T 3hzq_A 78 FWGIKYGLFIQSVIDFIIIAFALFIFVKIANTLMKKE 114 (114)
T ss_dssp CSSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 1123434999999999999999999999999985269
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=61.19 E-value=5.6 Score=19.14 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=8.1
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 7666677875046
Q gi|254780697|r 43 DIMMPLVGCVMGN 55 (141)
Q Consensus 43 diimPlIg~i~g~ 55 (141)
-.+||++....|+
T Consensus 340 a~fmPiv~~mgGN 352 (473)
T 2zy9_A 340 AFYVPVLLGTGGN 352 (473)
T ss_dssp HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9870179885317
No 4
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=54.78 E-value=7.5 Score=18.36 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHC
Q ss_conf 889868356999999999640
Q gi|254780697|r 120 NVKNPPAEVQLLTEIRDLLQK 140 (141)
Q Consensus 120 ~~~~~~~e~~LL~EIRDlLkk 140 (141)
....+|++.++.++||+.|+.
T Consensus 7 k~k~~PTd~ei~~~i~~IL~~ 27 (70)
T 1q1v_A 7 KLKKPPTDEELKETIKKLLAS 27 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 566998999999999999984
No 5
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=38.41 E-value=19 Score=15.86 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q ss_conf 9999999999999-9999999998412348
Q gi|254780697|r 92 SVLVNFFILAGVV-FVLIQFMNKLVKQTEN 120 (141)
Q Consensus 92 ~aiI~FlIiA~vi-Flivk~~nk~~~~~e~ 120 (141)
+.++-++++-.+. |++++|=.|-+|+.++
T Consensus 4 ~~l~~~v~~f~ifYFliIRPQ~Kr~Ke~~~ 33 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 899999999999999995701777999999
No 6
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=27.96 E-value=22 Score=15.53 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 6999999999640
Q gi|254780697|r 128 VQLLTEIRDLLQK 140 (141)
Q Consensus 128 ~~LL~EIRDlLkk 140 (141)
.+.|.|+||+|++
T Consensus 15 nq~l~elre~lrq 27 (45)
T 1mz9_A 15 NAALQDVRELLRQ 27 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 7
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=15.17 E-value=55 Score=13.09 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999996409
Q gi|254780697|r 129 QLLTEIRDLLQKN 141 (141)
Q Consensus 129 ~LL~EIRDlLkkn 141 (141)
+||-||-+.|..|
T Consensus 18 ~lldeID~vLE~N 30 (44)
T 3m91_B 18 DLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999975
No 8
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=12.69 E-value=65 Score=12.66 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHH------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 953012789999999------836669999999999989999999999766667787504
Q gi|254780697|r 1 MFQGTPVFNEFKKFI------ARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMG 54 (141)
Q Consensus 1 m~k~~~mlkeFK~Fi------~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g 54 (141)
|.|-.++++|-++=. .|..+....+.|++-..+-++.-..+|-++.-+++++.+
T Consensus 1 M~ki~~f~~~v~~ElkKV~WPtr~e~~~~T~vVii~~ii~a~~i~~~D~~~~~~~~~ll~ 60 (65)
T 3dl8_C 1 MEKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILS 60 (65)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 927999999999997537793979986389988889999999999999999999999993
No 9
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=12.50 E-value=65 Score=12.62 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHH---------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 53012789999999---------836669999999999989999999999766667787504
Q gi|254780697|r 2 FQGTPVFNEFKKFI---------ARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMG 54 (141)
Q Consensus 2 ~k~~~mlkeFK~Fi---------~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g 54 (141)
+||.++++=|||.. .|...+.....|++-....++.=.++|-++.-++..++|
T Consensus 1 skGk~~~~f~~ev~~E~kKV~WPtr~e~~~~T~vVi~~~ii~~~~~~~~D~~~~~~~~~i~g 62 (65)
T 3bo0_B 1 TKGKATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKG 62 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98488999999999997122189928877588888889999999999999999999999975
No 10
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=12.25 E-value=67 Score=12.57 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 6999999999640
Q gi|254780697|r 128 VQLLTEIRDLLQK 140 (141)
Q Consensus 128 ~~LL~EIRDlLkk 140 (141)
.++|+|+|-.|.|
T Consensus 14 qeIL~EvRkEl~K 26 (45)
T 1use_A 14 QELLEEVKKELQK 26 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
Done!