HHSEARCH alignment of GI: 254780697 and SCOP domain: d2oara1

Alignment
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=7.6e-36  Score=236.09  Aligned_cols=108  Identities=33%  Similarity=0.488  Sum_probs=90.8

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             83666999999999998999999999976666778750465674432576276666311232101660000989999999
Q gi|254780697|r   16 ARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLV   95 (141)
Q Consensus        16 ~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~yG~fl~aiI   95 (141)
                      .||||+|||||||||+||+++|+|||+|+|||+||++.+++   .+.++.+.         ....++..+.||+|++++|
T Consensus         1 arGNVidLAVgvIiG~AF~~iV~slV~diimPlIg~i~~~~---~~~~~~~~---------~~~~~~~~i~~G~fi~a~I   68 (109)
T d2oara1           1 ARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNA---QSDVGILR---------IGIGGGQTIDLNVLLSAAI   68 (109)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---EEECCCCT---------TTCCSCEEECHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC---CCHHHHHE---------EECCCCCEEEHHHHHHHHH
T ss_conf             98208899999999999999999999984610676615775---23124420---------2037872343889999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             999999999-9999999998412348898683569999999
Q gi|254780697|r   96 NFFILAGVV-FVLIQFMNKLVKQTENVKNPPAEVQLLTEIR  135 (141)
Q Consensus        96 ~FlIiA~vi-Flivk~~nk~~~~~e~~~~~~~e~~LL~EIR  135 (141)
                      ||+|+||++ |+++|+|||+++++|+++++|+|++||+|||
T Consensus        69 nFlIiA~vv~F~vvk~~n~~~~k~~~~~~~p~e~~LL~EIR  109 (109)
T d2oara1          69 NFFLIAFAVYFLVVLPYNTLRKKGEVEQPGDTQVVLLTEIR  109 (109)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
T ss_conf             99999999999999999987405789997794779998639


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Gated mechanosensitive channel
superfamily: Gated mechanosensitive channel
family: Gated mechanosensitive channel
domain: Gated mechanosensitive channel
species: Mycobacterium tuberculosis [TaxId: 1773]