RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
(141 letters)
>gnl|CDD|32153 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 121 bits (305), Expect = 7e-29
Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 19/140 (13%)
Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
+ EFK+F RGNV+DL+VG+IIG AF ++V S+V DI+MPL+G ++G G DFSN F+ L
Sbjct: 3 MLKEFKEFALRGNVVDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLVG-GLDFSNLFITL 61
Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKN--- 123
V AYG+F ++NF I+A +F++++ +NKL ++ E +
Sbjct: 62 ------------GIPAVVIAYGAFIQAVINFLIIAFAIFLVVKAINKLRRKLEKEEPEAP 109
Query: 124 ---PPAEVQLLTEIRDLLQK 140
PPAE LLTEIRDLL+K
Sbjct: 110 APAPPAEEVLLTEIRDLLKK 129
>gnl|CDD|145084 pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.
Length = 127
Score = 105 bits (263), Expect = 6e-24
Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 14/133 (10%)
Query: 9 NEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSS 68
EFK+F RGNV+DL+VG++IGGAF ++V S+V DI+MPL+G ++G G DFS+ + L
Sbjct: 3 KEFKEFAMRGNVVDLAVGVVIGGAFGKIVSSLVADIIMPLIGRLLG-GVDFSDLSITLIG 61
Query: 69 EIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTE---NVKNPP 125
++ YG F ++NF I+A +F++I+ +NKL K+ E P
Sbjct: 62 DVG----------AVTLNYGLFIQAVINFLIIAFAIFLVIKAINKLRKKEEVEEAEAVPD 111
Query: 126 AEVQLLTEIRDLL 138
A+ LLTEIRDLL
Sbjct: 112 AQEVLLTEIRDLL 124
>gnl|CDD|39764 KOG4564, KOG4564, KOG4564, Adenylate cyclase-coupled calcitonin
receptor [Signal transduction mechanisms].
Length = 473
Score = 26.9 bits (59), Expect = 2.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 89 SFASVLVNFFILAGVVFVLIQ 109
++LVNF L +V +L+
Sbjct: 316 ILLAILVNFIFLINIVRILVT 336
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 26.7 bits (60), Expect = 2.4
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 23 LSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSE-----IKSSLISE 77
LSV + +G + + +VE VG G D P+ S I+ LI
Sbjct: 281 LSVAVAVGDEADEWIPKLVERAKKLKVGAGDDPGADMG----PVISPAAKERIE-GLIES 335
Query: 78 ARKQGA 83
++GA
Sbjct: 336 GVEEGA 341
>gnl|CDD|30370 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 26.4 bits (58), Expect = 3.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 78 ARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPPAEVQLLTEI 134
A+K+G G A IL + + I+++ TEN K P EV L E+
Sbjct: 31 AKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMEL 87
>gnl|CDD|144739 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 26.0 bits (58), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 118 TENVKNPPAEVQLLTE-IRDLLQK 140
TEN K P EV L E + + L++
Sbjct: 49 TENWKRPKEEVDFLMELLEEKLRR 72
>gnl|CDD|38080 KOG2869, KOG2869, KOG2869, Meiotic cell division protein
Pelota/DOM34 [Translation, ribosomal structure and
biogenesis].
Length = 379
Score = 26.0 bits (57), Expect = 4.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 95 VNFFILAGVVFVLIQFMNKLVKQTENVKNPP 125
V ++A FV QFM+ L +Q +
Sbjct: 202 VKCVVVASPGFVKDQFMDYLFQQAVKLDLKL 232
>gnl|CDD|33296 COG3493, CitS, Na+/citrate symporter [Energy production and
conversion].
Length = 438
Score = 25.9 bits (57), Expect = 4.3
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 18 GNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISE 77
G V +VGI++G F Q + +++P++G MG G +PL SEI SS+
Sbjct: 147 GMVGAAAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGA------VPL-SEIYSSIT-- 197
Query: 78 ARKQGAVFAYGSFASVLVNFF--ILAGVV 104
Q F+ A + N F I A ++
Sbjct: 198 GGSQEEYFSQLIPALTIGNVFAIICAALL 226
>gnl|CDD|143938 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 25.6 bits (57), Expect = 4.7
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 24/107 (22%)
Query: 21 IDLSVGIIIGGAF----------NR--VVQSIVEDIMMPLV----GCVMGNGTDFSNYFL 64
+D +V + GAF +R V +SI ++ + LV +G+ D
Sbjct: 250 LDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIYDEFVERLVEAAKSLKVGDPLDPDTDIG 309
Query: 65 PLSSEIKS----SLISEARKQGAVFAYGSFASVLVNFF----ILAGV 103
PL S+ + S I +A+++GA G A + +F +LA V
Sbjct: 310 PLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKGYFVEPTVLADV 356
>gnl|CDD|36292 KOG1076, KOG1076, KOG1076, Translation initiation factor 3, subunit
c (eIF-3c) [Translation, ribosomal structure and
biogenesis].
Length = 843
Score = 25.0 bits (54), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 113 KLVKQTENVKNPPAEVQLLTEIRDLLQK 140
K V + ENVK P ++ L E+ D L +
Sbjct: 92 KEVDEKENVKVPRFYIKTLVELEDFLNE 119
>gnl|CDD|147666 pfam05625, PAXNEB, PAXNEB protein. PAXNEB or PAX6 neighbour is
found in several eukaryotic organisms. PAXNED is an RNA
polymerase II Elongator protein subunit. It is part of
the HAP subcomplex of Elongator, which is a six-subunit
component of the RNA polymerase II holoenzyme. The HAP
subcomplex is required for Elongator structural
integrity and histone acetyltransferase activity. This
protein family has a P-loop motif. However its sequence
has degraded in many members of the family.
Length = 353
Score = 24.6 bits (54), Expect = 9.8
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 18/59 (30%)
Query: 64 LPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVV-----FVLI---QFMNKL 114
LPL S S LI E FASVL+ +F GVV FV Q++ +L
Sbjct: 43 LPLGS---SLLIEEDG-------TTDFASVLLRYFAAEGVVQNHHVFVASLPEQWLREL 91
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.325 0.141 0.395
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,647,277
Number of extensions: 81807
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 28
Length of query: 141
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,448,581
Effective search space: 253569117
Effective search space used: 253569117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)