RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus Liberibacter asiaticus str. psy62] (141 letters) >gnl|CDD|184414 PRK13952, mscL, large-conductance mechanosensitive channel; Provisional. Length = 142 Score = 164 bits (418), Expect = 7e-42 Identities = 66/138 (47%), Positives = 98/138 (71%), Gaps = 6/138 (4%) Query: 8 FNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLS 67 EFK+F +GNV+DL+VG+IIGGAF ++V S+V D++MP++G + G G DFSNYF+ L Sbjct: 4 LKEFKEFALKGNVMDLAVGVIIGGAFGKIVDSLVNDLIMPIIGLITG-GLDFSNYFIQLG 62 Query: 68 SEIKSSLIS--EARKQG-AVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENV--K 122 + + A+K G AVFAYG+F +VL+NF ILA ++F++++ +N+L ++ E Sbjct: 63 GAPAGNPTTLAAAKKAGVAVFAYGNFITVLINFLILAFIIFLMVKAINRLRRKEEAAPPP 122 Query: 123 NPPAEVQLLTEIRDLLQK 140 PP +V LL EIRDLL+K Sbjct: 123 APPEDVVLLREIRDLLKK 140 >gnl|CDD|179069 PRK00567, mscL, large-conductance mechanosensitive channel; Reviewed. Length = 134 Score = 133 bits (336), Expect = 2e-32 Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 13/139 (9%) Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66 + EFK+F RGNV+DL+VG+IIG AF ++V S+V+DI+MP +G ++G G DFSN + L Sbjct: 1 MLKEFKEFAMRGNVVDLAVGVIIGAAFGKIVSSLVDDIIMPPIGLLIG-GVDFSNLAIVL 59 Query: 67 SSEIKSSLISEARKQGAV-FAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPP 125 AV YG F + +++F I+A +F+L++ +NKL ++ E PP Sbjct: 60 G--------EAQGDAPAVVINYGVFINAVIDFLIIAFAIFLLVKLINKLRRKKEEPAAPP 111 Query: 126 A---EVQLLTEIRDLLQKN 141 A E LLTEIRDLL+ Sbjct: 112 APTTEEVLLTEIRDLLKAQ 130 >gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel; Provisional. Length = 130 Score = 106 bits (267), Expect = 2e-24 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 20/139 (14%) Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66 ++NEFKKF +GNVIDL+VG++IG AF ++V S+V+DI+ PL+G V+G G DF++ Sbjct: 1 MWNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLG-GVDFTDLKFTF 59 Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQT-----ENV 121 + YG+F + +F I+A +F+ ++ NKL + E + Sbjct: 60 GK--------------SSIMYGNFIQTIFDFLIIAASIFMFVKVFNKLTSKKEEEKEEEI 105 Query: 122 KNPPAEVQLLTEIRDLLQK 140 P E +LL EIRDLL++ Sbjct: 106 PEPTKEEELLGEIRDLLKQ 124 >gnl|CDD|184415 PRK13953, mscL, large-conductance mechanosensitive channel; Provisional. Length = 125 Score = 106 bits (265), Expect = 3e-24 Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 18/137 (13%) Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66 + EF+ F +GNV+DL+V ++IG AF ++V S+V +I+MPLVG ++G G DFS+ L Sbjct: 1 MLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVNNIIMPLVGVLLG-GLDFSD----L 55 Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKL---VKQTENVKN 123 S ++ S+I YG+F +V+F I+A +F+ ++ + +Q E Sbjct: 56 SWKVGKSVIQ----------YGAFIQSIVDFLIIAFAIFIFVKVLTSFIKKKEQQEEETP 105 Query: 124 PPAEVQLLTEIRDLLQK 140 P + L EIRDLL++ Sbjct: 106 VPPTEEYLKEIRDLLKQ 122 >gnl|CDD|161771 TIGR00220, mscL, large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus. Length = 127 Score = 93.4 bits (232), Expect = 2e-20 Identities = 58/138 (42%), Positives = 85/138 (61%), Gaps = 18/138 (13%) Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66 + EFK+F RGNV+DL+VG++IGGAF ++V S+V DI+MPL+G ++G G DFS L Sbjct: 1 FWKEFKEFAMRGNVVDLAVGVVIGGAFGKIVSSLVADIIMPLLGLLLG-GIDFSGLSFTL 59 Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKL-----VKQTENV 121 + AV YG F ++NF I+A +F++I+ +NKL V++ Sbjct: 60 ------------QDAQAVGKYGEFIQNIINFLIIAFAIFMIIKAINKLRRKKKVEEEAAA 107 Query: 122 KNPPAEVQLLTEIRDLLQ 139 + P A+ LLTEIRDLL+ Sbjct: 108 EAPDAQENLLTEIRDLLK 125 >gnl|CDD|172460 PRK13954, mscL, large-conductance mechanosensitive channel; Provisional. Length = 119 Score = 83.8 bits (207), Expect = 1e-17 Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 20/136 (14%) Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66 + EFK+F +GNV+DL++ +++G AFN+++ S+VE+I+MPL+G + G+ DF+ + Sbjct: 1 MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLVENIIMPLIGKIFGS-VDFAKEWSFW 59 Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPPA 126 IK YG F +++F I+A +F+ ++ N L+K+ E + Sbjct: 60 G--IK---------------YGLFIQSVIDFIIIAFALFIFVKIANTLMKKEEAEEEAVV 102 Query: 127 E--VQLLTEIRDLLQK 140 E V LLTEIRDLL++ Sbjct: 103 EENVVLLTEIRDLLRE 118 >gnl|CDD|177582 PHA03312, PHA03312, helicase-primase subunit BBLF2/3; Provisional. Length = 709 Score = 27.7 bits (61), Expect = 1.2 Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 111 MNKLVKQTENVKNPPAEVQLLTEIRDLLQK 140 +++L + E K PP+ LLT +RDL ++ Sbjct: 582 LDQLAARPEADKAPPSHDHLLTLVRDLTRR 611 >gnl|CDD|178762 PLN03223, PLN03223, Polycystin cation channel protein; Provisional. Length = 1634 Score = 26.4 bits (58), Expect = 2.5 Identities = 8/22 (36%), Positives = 16/22 (72%) Query: 94 LVNFFILAGVVFVLIQFMNKLV 115 L++FF++ G+VFV F+ ++ Sbjct: 1330 LMHFFVIFGMVFVGYAFIGHVI 1351 >gnl|CDD|178260 PLN02654, PLN02654, acetate-CoA ligase. Length = 666 Score = 26.4 bits (58), Expect = 2.9 Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 64 LPLSSEIKSSLISEARKQGAVFA 86 +P S E++ SLI R Q FA Sbjct: 588 VPYSEELRKSLILTVRNQIGAFA 610 >gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional. Length = 181 Score = 26.0 bits (58), Expect = 4.1 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 32 AFNRVVQSIVEDI--MMPLVGCVMGNGTDFSNYFLP 65 A +R+ I D+ PLV CVMG G F+ LP Sbjct: 25 AIDRMADEITADLADENPLVLCVMGGGLVFTGQLLP 60 >gnl|CDD|184359 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional. Length = 440 Score = 25.6 bits (57), Expect = 4.3 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 3/24 (12%) Query: 93 VLVNFFILAGVVFV-LIQFMNKLV 115 VL+ FFILA +FV LI+F KL Sbjct: 152 VLLAFFILAIQLFVTLIEF--KLT 173 >gnl|CDD|129865 TIGR00783, ccs, citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism. Length = 347 Score = 25.8 bits (57), Expect = 4.5 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 14/99 (14%) Query: 11 FKKFI---ARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLS 67 +FI G V+ + VGI++G F + I+MP++ +G G +PL Sbjct: 51 LMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLMYIVMPIMAGGVGAGI------VPL- 103 Query: 68 SEIKSSLISEARKQGAVFAYGSFASVLVNFF--ILAGVV 104 S I S++ R +F+ A ++ N F I AG++ Sbjct: 104 SIIYSAIT--GRSSEEIFSQLIPAVIIGNIFAIICAGLL 140 >gnl|CDD|183790 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed. Length = 282 Score = 25.2 bits (56), Expect = 5.8 Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 94 LVNFFILAGVVFVLIQFMNKLVKQ 117 L F +L V F+L+ +N L Sbjct: 92 LALFVVLVLVAFLLVLTLNTLTIW 115 >gnl|CDD|130303 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate. Length = 533 Score = 25.1 bits (55), Expect = 6.2 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 15/76 (19%) Query: 60 SNYFLP--LSSEIKSSLISEARKQ--GAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLV 115 S ++P + K L++E + G + +F +++ + K V Sbjct: 322 SRLYVPHSVWPRFKDELLAELAEVKVGDPDDFSNFMGAVID-----------ERSFVKNV 370 Query: 116 KQTENVKNPPAEVQLL 131 K E K PAE+ +L Sbjct: 371 KYIERAKGDPAELTIL 386 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 24.8 bits (55), Expect = 9.0 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%) Query: 90 FASVLVNFFILAGVVFVLIQFMN 112 AS+L+N LA +FV MN Sbjct: 154 IASLLINLLALASPLFV----MN 172 >gnl|CDD|184876 PRK14876, PRK14876, conjugal transfer mating pair stabilization protein TraN; Provisional. Length = 928 Score = 24.5 bits (53), Expect = 9.2 Identities = 13/41 (31%), Positives = 18/41 (43%) Query: 56 GTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVN 96 G + SN F S ++ IS + F G +SV VN Sbjct: 47 GQNLSNSFKSSSGTVQDGTISMPTLKDGQFQMGGGSSVNVN 87 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.141 0.395 Gapped Lambda K H 0.267 0.0710 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,282,354 Number of extensions: 136186 Number of successful extensions: 456 Number of sequences better than 10.0: 1 Number of HSP's gapped: 442 Number of HSP's successfully gapped: 45 Length of query: 141 Length of database: 5,994,473 Length adjustment: 84 Effective length of query: 57 Effective length of database: 4,179,401 Effective search space: 238225857 Effective search space used: 238225857 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (23.8 bits)