RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
         (141 letters)



>gnl|CDD|184414 PRK13952, mscL, large-conductance mechanosensitive channel;
           Provisional.
          Length = 142

 Score =  164 bits (418), Expect = 7e-42
 Identities = 66/138 (47%), Positives = 98/138 (71%), Gaps = 6/138 (4%)

Query: 8   FNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLS 67
             EFK+F  +GNV+DL+VG+IIGGAF ++V S+V D++MP++G + G G DFSNYF+ L 
Sbjct: 4   LKEFKEFALKGNVMDLAVGVIIGGAFGKIVDSLVNDLIMPIIGLITG-GLDFSNYFIQLG 62

Query: 68  SEIKSSLIS--EARKQG-AVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENV--K 122
                +  +   A+K G AVFAYG+F +VL+NF ILA ++F++++ +N+L ++ E     
Sbjct: 63  GAPAGNPTTLAAAKKAGVAVFAYGNFITVLINFLILAFIIFLMVKAINRLRRKEEAAPPP 122

Query: 123 NPPAEVQLLTEIRDLLQK 140
            PP +V LL EIRDLL+K
Sbjct: 123 APPEDVVLLREIRDLLKK 140


>gnl|CDD|179069 PRK00567, mscL, large-conductance mechanosensitive channel;
           Reviewed.
          Length = 134

 Score =  133 bits (336), Expect = 2e-32
 Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 13/139 (9%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
           +  EFK+F  RGNV+DL+VG+IIG AF ++V S+V+DI+MP +G ++G G DFSN  + L
Sbjct: 1   MLKEFKEFAMRGNVVDLAVGVIIGAAFGKIVSSLVDDIIMPPIGLLIG-GVDFSNLAIVL 59

Query: 67  SSEIKSSLISEARKQGAV-FAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPP 125
                           AV   YG F + +++F I+A  +F+L++ +NKL ++ E    PP
Sbjct: 60  G--------EAQGDAPAVVINYGVFINAVIDFLIIAFAIFLLVKLINKLRRKKEEPAAPP 111

Query: 126 A---EVQLLTEIRDLLQKN 141
           A   E  LLTEIRDLL+  
Sbjct: 112 APTTEEVLLTEIRDLLKAQ 130


>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
           Provisional.
          Length = 130

 Score =  106 bits (267), Expect = 2e-24
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 20/139 (14%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
           ++NEFKKF  +GNVIDL+VG++IG AF ++V S+V+DI+ PL+G V+G G DF++     
Sbjct: 1   MWNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLG-GVDFTDLKFTF 59

Query: 67  SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQT-----ENV 121
                           +   YG+F   + +F I+A  +F+ ++  NKL  +      E +
Sbjct: 60  GK--------------SSIMYGNFIQTIFDFLIIAASIFMFVKVFNKLTSKKEEEKEEEI 105

Query: 122 KNPPAEVQLLTEIRDLLQK 140
             P  E +LL EIRDLL++
Sbjct: 106 PEPTKEEELLGEIRDLLKQ 124


>gnl|CDD|184415 PRK13953, mscL, large-conductance mechanosensitive channel;
           Provisional.
          Length = 125

 Score =  106 bits (265), Expect = 3e-24
 Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 18/137 (13%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
           +  EF+ F  +GNV+DL+V ++IG AF ++V S+V +I+MPLVG ++G G DFS+    L
Sbjct: 1   MLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVNNIIMPLVGVLLG-GLDFSD----L 55

Query: 67  SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKL---VKQTENVKN 123
           S ++  S+I           YG+F   +V+F I+A  +F+ ++ +       +Q E    
Sbjct: 56  SWKVGKSVIQ----------YGAFIQSIVDFLIIAFAIFIFVKVLTSFIKKKEQQEEETP 105

Query: 124 PPAEVQLLTEIRDLLQK 140
            P   + L EIRDLL++
Sbjct: 106 VPPTEEYLKEIRDLLKQ 122


>gnl|CDD|161771 TIGR00220, mscL, large conductance mechanosensitive channel
           protein.  Protein encodes a channel which opens in
           response to a membrane stretch force. Probably serves as
           an osmotic gauge. Carboxy terminus tends to be more
           divergent across species with a high degree of sequence
           conservation found at the N-terminus.
          Length = 127

 Score = 93.4 bits (232), Expect = 2e-20
 Identities = 58/138 (42%), Positives = 85/138 (61%), Gaps = 18/138 (13%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
            + EFK+F  RGNV+DL+VG++IGGAF ++V S+V DI+MPL+G ++G G DFS     L
Sbjct: 1   FWKEFKEFAMRGNVVDLAVGVVIGGAFGKIVSSLVADIIMPLLGLLLG-GIDFSGLSFTL 59

Query: 67  SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKL-----VKQTENV 121
                       +   AV  YG F   ++NF I+A  +F++I+ +NKL     V++    
Sbjct: 60  ------------QDAQAVGKYGEFIQNIINFLIIAFAIFMIIKAINKLRRKKKVEEEAAA 107

Query: 122 KNPPAEVQLLTEIRDLLQ 139
           + P A+  LLTEIRDLL+
Sbjct: 108 EAPDAQENLLTEIRDLLK 125


>gnl|CDD|172460 PRK13954, mscL, large-conductance mechanosensitive channel;
           Provisional.
          Length = 119

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 20/136 (14%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
           +  EFK+F  +GNV+DL++ +++G AFN+++ S+VE+I+MPL+G + G+  DF+  +   
Sbjct: 1   MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLVENIIMPLIGKIFGS-VDFAKEWSFW 59

Query: 67  SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPPA 126
              IK               YG F   +++F I+A  +F+ ++  N L+K+ E  +    
Sbjct: 60  G--IK---------------YGLFIQSVIDFIIIAFALFIFVKIANTLMKKEEAEEEAVV 102

Query: 127 E--VQLLTEIRDLLQK 140
           E  V LLTEIRDLL++
Sbjct: 103 EENVVLLTEIRDLLRE 118


>gnl|CDD|177582 PHA03312, PHA03312, helicase-primase subunit BBLF2/3; Provisional.
          Length = 709

 Score = 27.7 bits (61), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 111 MNKLVKQTENVKNPPAEVQLLTEIRDLLQK 140
           +++L  + E  K PP+   LLT +RDL ++
Sbjct: 582 LDQLAARPEADKAPPSHDHLLTLVRDLTRR 611


>gnl|CDD|178762 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
          Length = 1634

 Score = 26.4 bits (58), Expect = 2.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)

Query: 94   LVNFFILAGVVFVLIQFMNKLV 115
            L++FF++ G+VFV   F+  ++
Sbjct: 1330 LMHFFVIFGMVFVGYAFIGHVI 1351


>gnl|CDD|178260 PLN02654, PLN02654, acetate-CoA ligase.
          Length = 666

 Score = 26.4 bits (58), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 64  LPLSSEIKSSLISEARKQGAVFA 86
           +P S E++ SLI   R Q   FA
Sbjct: 588 VPYSEELRKSLILTVRNQIGAFA 610


>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine
          phosphoribosyltransferase; Provisional.
          Length = 181

 Score = 26.0 bits (58), Expect = 4.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 32 AFNRVVQSIVEDI--MMPLVGCVMGNGTDFSNYFLP 65
          A +R+   I  D+    PLV CVMG G  F+   LP
Sbjct: 25 AIDRMADEITADLADENPLVLCVMGGGLVFTGQLLP 60


>gnl|CDD|184359 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
          Length = 440

 Score = 25.6 bits (57), Expect = 4.3
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 3/24 (12%)

Query: 93  VLVNFFILAGVVFV-LIQFMNKLV 115
           VL+ FFILA  +FV LI+F  KL 
Sbjct: 152 VLLAFFILAIQLFVTLIEF--KLT 173


>gnl|CDD|129865 TIGR00783, ccs, citrate carrier protein, CCS family.  These
           proteins are members of the Citrate:Cation Symporter
           (CCS) Family (TC 2.A.24). These proteins have 12 GES
           predicted transmembrane regions. Most members of the CCS
           family catalyze citrate uptake with either Na+ or H+ as
           the cotransported cation. However, one member is
           specific for L-malate and probably functions by a proton
           symport mechanism.
          Length = 347

 Score = 25.8 bits (57), Expect = 4.5
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 11  FKKFI---ARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLS 67
             +FI     G V+ + VGI++G  F       +  I+MP++   +G G       +PL 
Sbjct: 51  LMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLMYIVMPIMAGGVGAGI------VPL- 103

Query: 68  SEIKSSLISEARKQGAVFAYGSFASVLVNFF--ILAGVV 104
           S I S++    R    +F+    A ++ N F  I AG++
Sbjct: 104 SIIYSAIT--GRSSEEIFSQLIPAVIIGNIFAIICAGLL 140


>gnl|CDD|183790 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
          Length = 282

 Score = 25.2 bits (56), Expect = 5.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 94  LVNFFILAGVVFVLIQFMNKLVKQ 117
           L  F +L  V F+L+  +N L   
Sbjct: 92  LALFVVLVLVAFLLVLTLNTLTIW 115


>gnl|CDD|130303 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
           dehydrogenase, group 1.  This model represents one of
           two related branches of delta-1-pyrroline-5-carboxylate
           dehydrogenase. The two branches are not as closely
           related to each other as some aldehyde dehydrogenases
           are to this branch, and separate models are built for
           this reason. The enzyme is the second of two in the
           degradation of proline to glutamate.
          Length = 533

 Score = 25.1 bits (55), Expect = 6.2
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 15/76 (19%)

Query: 60  SNYFLP--LSSEIKSSLISEARKQ--GAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLV 115
           S  ++P  +    K  L++E  +   G    + +F   +++            +   K V
Sbjct: 322 SRLYVPHSVWPRFKDELLAELAEVKVGDPDDFSNFMGAVID-----------ERSFVKNV 370

Query: 116 KQTENVKNPPAEVQLL 131
           K  E  K  PAE+ +L
Sbjct: 371 KYIERAKGDPAELTIL 386


>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
           family.  Type I protein secretion is a system in some
           Gram-negative bacteria to export proteins (often
           proteases) across both inner and outer membranes to the
           extracellular medium. This is one of three proteins of
           the type I secretion apparatus. Targeted proteins are
           not cleaved at the N-terminus, but rather carry signals
           located toward the extreme C-terminus to direct type I
           secretion. This model is related to models TIGR01842 and
           TIGR01846, and to bacteriocin ABC transporters that
           cleave their substrates during export.
          Length = 694

 Score = 24.8 bits (55), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)

Query: 90  FASVLVNFFILAGVVFVLIQFMN 112
            AS+L+N   LA  +FV    MN
Sbjct: 154 IASLLINLLALASPLFV----MN 172


>gnl|CDD|184876 PRK14876, PRK14876, conjugal transfer mating pair stabilization
          protein TraN; Provisional.
          Length = 928

 Score = 24.5 bits (53), Expect = 9.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 56 GTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVN 96
          G + SN F   S  ++   IS    +   F  G  +SV VN
Sbjct: 47 GQNLSNSFKSSSGTVQDGTISMPTLKDGQFQMGGGSSVNVN 87


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.141    0.395 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,282,354
Number of extensions: 136186
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 45
Length of query: 141
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,179,401
Effective search space: 238225857
Effective search space used: 238225857
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)