RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
(141 letters)
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 101 bits (254), Expect = 2e-23
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 16 ARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLI 75
ARGN++DL+V ++IG AF +V + I+ PL+ + N ++
Sbjct: 1 ARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQS------------DVGIL 48
Query: 76 SEARKQGAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLVKQTENVKNPPAEVQLLTEI 134
G S +NFF++A V F+++ N L K+ E + +V LLTEI
Sbjct: 49 RIGIGGGQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEVEQPGDTQVVLLTEI 108
Query: 135 R 135
R
Sbjct: 109 R 109
>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL
{Escherichia coli [TaxId: 562]}
Length = 382
Score = 30.1 bits (66), Expect = 0.071
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
GT +F + + I+LS G
Sbjct: 12 GTTIFTQMSALAQQHQAINLSQG 34
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase
I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 29.8 bits (65), Expect = 0.086
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
V+ E+ + A+ ++L G
Sbjct: 12 TKSVWVEYIQLAAQYKPLNLGQG 34
>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I
{Human (Homo sapiens) [TaxId: 9606]}
Length = 418
Score = 27.8 bits (60), Expect = 0.35
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
+ EF K + +V++L G
Sbjct: 11 DYNPWVEFVKLASEHDVVNLGQG 33
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus
thermophilus [TaxId: 274]}
Length = 368
Score = 26.6 bits (57), Expect = 0.83
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 4 GTPVFNEFKKFIARGNVIDLSVG 26
+F R ++L G
Sbjct: 11 KESIFPRMSGLAQRLGAVNLGQG 33
>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 494
Score = 25.7 bits (56), Expect = 1.4
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 52 VMGNGTDFSNYFLPLSSEIK----SSLISEARKQGAVFAYGSFASVLVNFFILAGVV 104
V+GN D P E + I+ +++GA G + +FI V
Sbjct: 324 VVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 380
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow
(Bos taurus) [TaxId: 9913]}
Length = 192
Score = 24.4 bits (52), Expect = 3.7
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 81 QGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQT 118
Q AVF G F F+ L GV + F
Sbjct: 38 QMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNP 75
>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella
oneidensis [TaxId: 70863]}
Length = 158
Score = 24.1 bits (52), Expect = 4.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 48 LVGCVMGNGTDFSNYFLPLSSEIKS 72
LVGC++ G F ++ L + +
Sbjct: 118 LVGCMVSPGFTFDDFELFSQEALLA 142
>d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 118
Score = 24.1 bits (52), Expect = 4.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 84 VFAYGSFASVLVNFFILAGVVFV 106
+ YG+ + L G F+
Sbjct: 4 IAVYGTLRKGKPLHWYLKGAKFL 26
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 24.1 bits (51), Expect = 4.8
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 1 MFQGTPVFNEFKKFIA--RGNVIDLSVGI 27
Q VF F ++L VG
Sbjct: 11 QAQPVLVFKLIADFREDPDPRKVNLGVGA 39
>d1xhsa_ d.269.1.1 (A:) Hypothetical protein YtfP {Escherichia coli
[TaxId: 562]}
Length = 113
Score = 24.2 bits (52), Expect = 5.2
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 84 VFAYGSFASVLVNFFILAGVVFV 106
+F YGS N + +
Sbjct: 3 IFVYGSLRHKQGNSHWMTNAQLL 25
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 323
Score = 23.9 bits (52), Expect = 5.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 85 FAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPPAEVQL 130
FA+GS A +++ F + A V F +QF + + P A+ +
Sbjct: 59 FAFGSTAILIILFNMAAEVHFDPLQFFRQFF--WLGLYPPKAQYGM 102
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 23.6 bits (50), Expect = 7.5
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 22 DLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISE 77
D+ + +GG + + L GCV + L S +
Sbjct: 133 DVVGILYVGGLPINYTTRRIGPVTYSLDGCV--RNLHMEQAPVDLDQPTSSFHVGT 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.395
Gapped
Lambda K H
0.267 0.0381 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 495,695
Number of extensions: 20536
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 17
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.2 bits)