BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
         (141 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 141

 Score =  280 bits (717), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MFQGTPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFS 60
           MFQGTPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFS
Sbjct: 1   MFQGTPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFS 60

Query: 61  NYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN 120
           NYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN
Sbjct: 61  NYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN 120

Query: 121 VKNPPAEVQLLTEIRDLLQKN 141
           VKNPPAEVQLLTEIRDLLQKN
Sbjct: 121 VKNPPAEVQLLTEIRDLLQKN 141


>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 544

 Score = 24.6 bits (52), Expect = 0.73,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDI-MMPLVGCVMGNGTDFSN 61
           V NE K+FI +GN     V   IGG         + DI +MP V  +   G +FS+
Sbjct: 118 VTNEIKEFITQGNEDADFVICEIGGT--------IGDIEVMPFVEAIRQFGNEFSH 165


>537021.9.peg.1142_1 
          Length = 218

 Score = 22.3 bits (46), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 31  GAFNRVVQSIVEDIMMP 47
           GAFN  V++ ++D++ P
Sbjct: 179 GAFNHFVRNSIDDVLNP 195


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 22.3 bits (46), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 88  GSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVK 122
           G+  SV+ + F++ G+ F+L      L++Q+   K
Sbjct: 33  GAMFSVIASKFVILGIPFLLKWVTESLIEQSTASK 67


>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 959

 Score = 21.9 bits (45), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 115 VKQTENVKNPPAEVQLLTEIRDLLQ 139
           ++Q     NP + V  +TEI D L+
Sbjct: 88  IEQKNTSHNPRSTVGTITEIHDYLR 112


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 20.8 bits (42), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 9   NEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVED 43
           N   K ++   V D    +I+GG  NR+ Q I  D
Sbjct: 604 NFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFD 638


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.141    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,240
Number of Sequences: 1233
Number of extensions: 3306
Number of successful extensions: 16
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 328,796
effective HSP length: 66
effective length of query: 75
effective length of database: 247,418
effective search space: 18556350
effective search space used: 18556350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 34 (17.7 bits)