HHsearch alignment for GI: 254780698 and conserved domain: TIGR03423

>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=98.23  E-value=0.00037  Score=43.71  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             CCCCEEEEECCCCEEEEEC-------------------------------C-C-CCCC-CCHHHHHHHHHHHHHHHHCCC
Q ss_conf             7631999998896283113-------------------------------6-9-9888-813879999999999755589
Q gi|254780698|r   52 PKYSSIVIDVNKNQMTGFK-------------------------------Q-D-EPRY-PASLTKMMTLYIIFEYLQSKK   97 (336)
Q Consensus        52 ~~~sAiv~D~~tG~ILy~K-------------------------------n-~-~~~~-PASlTKlMTa~v~le~i~~g~   97 (336)
T Consensus       247 ~~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe---~g~  323 (592)
T TIGR03423       247 RRGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALE---EGV  323 (592)
T ss_pred             CCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH---CCC
T ss_conf             73569999668884899961788770230378798899987439665421201122446872689999999997---599


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCC--CCCC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             8855411153676124544322--5788-568830245788998777776545542010057899988876887266122
Q gi|254780698|r   98 LHLNTQIPVSKTAATQNPSKLY--LKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT  174 (336)
Q Consensus        98 i~~~~~v~is~~a~~~~~s~~~--l~~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t  174 (336)
T Consensus       324 i~~~~~~~~~-g~~~~~~~~i~d~~~~~~g~lt----~~~~l~~SsNvg~~~ia~~lg~------~~~~~~~~~fGfg~~  392 (592)
T TIGR03423       324 ITPDTRINCP-GYFQLGGRRFRCWKRGGHGRVD----LRKAIEESCDVYFYQLALRLGI------DKIAEYAKKFGFGQK  392 (592)
T ss_pred             CCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEC----HHHHHHEEECHHHHHHHHHCCH------HHHHHHHHHCCCCCC
T ss_conf             9998589607-8302598523047888863014----5544103833999789886187------889999984678877


Q ss_pred             C
Q ss_conf             2
Q gi|254780698|r  175 I  175 (336)
Q Consensus       175 ~  175 (336)
T Consensus       393 t  393 (592)
T TIGR03423       393 T  393 (592)
T ss_pred             C
T ss_conf             6