HHsearch alignment for GI: 254780698 and conserved domain: TIGR03423
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=98.23 E-value=0.00037 Score=43.71 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCCEEEEEC-------------------------------C-C-CCCC-CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 7631999998896283113-------------------------------6-9-9888-813879999999999755589
Q gi|254780698|r 52 PKYSSIVIDVNKNQMTGFK-------------------------------Q-D-EPRY-PASLTKMMTLYIIFEYLQSKK 97 (336)
Q Consensus 52 ~~~sAiv~D~~tG~ILy~K-------------------------------n-~-~~~~-PASlTKlMTa~v~le~i~~g~ 97 (336)
T Consensus 247 ~~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe---~g~ 323 (592)
T TIGR03423 247 RRGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALE---EGV 323 (592)
T ss_pred CCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH---CCC
T ss_conf 73569999668884899961788770230378798899987439665421201122446872689999999997---599
Q ss_pred CCCCCCCCCCHHHHCCCCCCCC--CCCC-CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8855411153676124544322--5788-568830245788998777776545542010057899988876887266122
Q gi|254780698|r 98 LHLNTQIPVSKTAATQNPSKLY--LKEK-TYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNT 174 (336)
Q Consensus 98 i~~~~~v~is~~a~~~~~s~~~--l~~g-~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t 174 (336)
T Consensus 324 i~~~~~~~~~-g~~~~~~~~i~d~~~~~~g~lt----~~~~l~~SsNvg~~~ia~~lg~------~~~~~~~~~fGfg~~ 392 (592)
T TIGR03423 324 ITPDTRINCP-GYFQLGGRRFRCWKRGGHGRVD----LRKAIEESCDVYFYQLALRLGI------DKIAEYAKKFGFGQK 392 (592)
T ss_pred CCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEC----HHHHHHEEECHHHHHHHHHCCH------HHHHHHHHHCCCCCC
T ss_conf 9998589607-8302598523047888863014----5544103833999789886187------889999984678877
Q ss_pred C
Q ss_conf 2
Q gi|254780698|r 175 I 175 (336)
Q Consensus 175 ~ 175 (336)
T Consensus 393 t 393 (592)
T TIGR03423 393 T 393 (592)
T ss_pred C
T ss_conf 6