HHsearch alignment for GI: 254780698 and conserved domain: pfam00905
>pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family.
Probab=98.65 E-value=6.7e-06 Score=54.11 Aligned_cols=206 Identities=15% Similarity=0.050 Sum_probs=107.3
Q ss_pred CEEEEECCCCEEEEE-CCC----C------------C-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 199999889628311-369----9------------8-888138799999999997555898855411153676124544
Q gi|254780698|r 55 SSIVIDVNKNQMTGF-KQD----E------------P-RYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS 116 (336)
Q Consensus 55 sAiv~D~~tG~ILy~-Kn~----~------------~-~~PASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s 116 (336)
T Consensus 2 a~Vv~d~~TG~IlAm~~~p~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaaLe---~g~~~~~~~~~~~~~-~~~~~~ 77 (296)
T pfam00905 2 SAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALD---NGILKPEETFDDWPG-LPVGGY 77 (296)
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH---CCCCCCCCCCCCCCC-CCCCCC
T ss_conf 5999989999299998689889787664222187668658848999999999998---799887611147764-347993
Q ss_pred CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEECCCC---------------
Q ss_conf 32257885688302457889987777765455420100578999888768872661222002454---------------
Q gi|254780698|r 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASG--------------- 181 (336)
Q Consensus 117 ~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~Gs~~~Fv~~MN~~A~~lGl~~t~f~np~G--------------- 181 (336)
T Consensus 78 ~~-~n~~~~~~G~~tl~~al~~S~N~~~~~l~~~lg~------~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~~~~~~~~ 150 (296)
T pfam00905 78 TI-KDWNQDGSGTITLREALEYSSNWYFQQLALKLGK------DKLRDYLKKFGYGNKTGIGLPGESAGILPPRYRGDGA 150 (296)
T ss_pred CE-ECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC------HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 22-4689998875549999985096778999997084------7899999971888776888864435667775543101
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHCCC----CEEEEEEEEEE-EEEEC-CEEEE-----EECHHC-----------CCCCC
Q ss_conf ---33334453013455555420136----20467761156-54347-86997-----210102-----------57687
Q gi|254780698|r 182 ---LHDKNQITTARDQAILGILLRKN----FPQYYKYFSIR-KFRYR-NRIIT-----NHNKLL-----------NKMHN 236 (336)
Q Consensus 182 ---l~~~~~~tta~Dla~l~~~~~~~----~p~~~~~~s~~-~~~~~-~~~~~-----n~N~lL-----------~~~~g 236 (336)
T Consensus 151 ~~~~G~G~~~vTplq~a~aya~iAN~G~~~~p~~v~~i~~~~~~~~~~~~~is~~~a~~v~~~l~~vv~~gt~~~~~~~~ 230 (296)
T pfam00905 151 TTAWGQGSLTITPLQQAQAYATIANNGKLVPPHIVKSIKKLVDPKVLGKLPISKSTAEKVKDMLKLVVNDGGGAAAVPGY 230 (296)
T ss_pred HEEEECCCCCCCHHHHHHHHHHHHCCCEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 01010676622699999999998719968376999500147898222340389999999999998507788743346897
Q ss_pred CEEEEECCCCCCC----------CEEEEEEEECCEEEE-EEEECCC
Q ss_conf 0056522423337----------179999997897999-9981799
Q gi|254780698|r 237 IDGIKTGYTRNSG----------FNIVTSLRYKDDPIV-AVVMGMP 271 (336)
Q Consensus 237 ~~G~KTG~T~~AG----------~clv~~a~~~g~~lI-~Vvlg~~ 271 (336)
T Consensus 231 ~vaGKTGTaq~~~~~~~~~~~~~awFvG~~P~~~p~~~v~V~v~~~ 276 (296)
T pfam00905 231 KVAGKTGTAQVAGKGGYKDGTYNGWFVGYAPADNPKYAFAVLIDDP 276 (296)
T ss_pred CEEEEEECCEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCC
T ss_conf 2689982536658888878865899999998799829999998668