HHsearch alignment for GI: 254780698 and conserved domain: pfam02113

>pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family.
Probab=97.93  E-value=0.00011  Score=46.90  Aligned_cols=179  Identities=13%  Similarity=0.089  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHC------CHHH
Q ss_conf             9999999997555898855411153676124544322578856883024578899877777654554201------0057
Q gi|254780698|r   83 MMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFIS------GSEK  156 (336)
Q Consensus        83 lMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~~lli~S~NdAa~alAe~i~------Gs~~  156 (336)
T Consensus       190 ~~~~~~f~~~L~~~Gi~v~~~~~~~~----~~~~~~~l~~~~S~pL~~iv~~m~k~S~N~~AE~L~~~lg~~~~~~~s~~  265 (383)
T pfam02113       190 GYAGAIFAKALALQGITVSGDIGRAG----TPQSARVLAVHQSAPLSDLLKKMMKKSDNLIAESLFREIGVAIKRPGSFE  265 (383)
T ss_pred             HHHHHHHHHHHHHCCCEEECCEEECC----CCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             99999999999976987806354246----89985699999697999999999741856999999999998627998889


Q ss_pred             HHHHHHHHHHHHHCCCC--CCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEEEE---CHHC
Q ss_conf             89998887688726612--220024543333445301345555542013620467761156543478699721---0102
Q gi|254780698|r  157 KFAILMSNKAKKIGMQN--TIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH---NKLL  231 (336)
Q Consensus       157 ~Fv~~MN~~A~~lGl~~--t~f~np~Gl~~~~~~tta~Dla~l~~~~~~~~p~~~~~~s~~~~~~~~~~~~n~---N~lL  231 (336)
T Consensus       266 ~g~~~v~~~L~~~gi~~~~~~l~DGSGLSr~-n~is~~~l~~lL~~~~~~-~~~~~~~~sLPvaG~dGTL~~r~~~~~~~  343 (383)
T pfam02113       266 AGADAVRSILSTAGIDTANLVLRDGSGLSRH-NLVTAATLAQLLQAIADQ-PALQALLDSLPVAGESGTLVGGTLRNRFK  343 (383)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEECCCCCCCC-CCCCHHHHHHHHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999974999556478448988733-454999999999999869-43889998398268888555555555445


Q ss_pred             C-CCCCCEEEEECCCCCCCCEEEEEEE-ECCEEEEEEEE
Q ss_conf             5-7687005652242333717999999-78979999981
Q gi|254780698|r  232 N-KMHNIDGIKTGYTRNSGFNIVTSLR-YKDDPIVAVVM  268 (336)
Q Consensus       232 ~-~~~g~~G~KTG~T~~AG~clv~~a~-~~g~~lI~Vvl  268 (336)
T Consensus       344 ~~~~~G~v~aKTGTL~-~V~sLaGyv~~~~G~~l~Fsi~  381 (383)
T pfam02113       344 GTPAVGKVRAKTGSLT-GVYSLAGYVTTDSGRKLAFSFI  381 (383)
T ss_pred             CCCCCCEEEEEEEECC-CCEEEEEEEECCCCCEEEEEEE
T ss_conf             7775675999985006-9579479999799899999999