HHsearch results for GI: 254780698 and protein with PDBid: 1yqs_A
>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*
Probab=98.47 E-value=3.8e-06 Score=54.26 Aligned_cols=197 Identities=14% Similarity=0.147 Sum_probs=98.5
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEHHHH-----------------
Q ss_conf 998888-13879999999999755589885541115367612454432257885688302457-----------------
Q gi|254780698|r 72 DEPRYP-ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGIL----------------- 133 (336)
Q Consensus 72 ~~~~~P-ASlTKlMTa~v~le~i~~g~i~~~~~v~is~~a~~~~~s~~~l~~g~~~tv~dLl~----------------- 133 (336)
++-+++ ||+||.+|+.+++..+++|++++|++|. ++--. +...+.+|+++||.
T Consensus 54 ~dT~f~i~SvsK~~ta~~i~~Lv~~G~l~ldd~v~--~ylp~-------~~~~~~iTi~~LL~HtSGl~~~~~~~~~~~~ 124 (349)
T 1yqs_A 54 TTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVN--TYLPG-------LLPDDRITVRQVMSHRSGLYDYTNDMFAQTV 124 (349)
T ss_dssp TTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBHH--HHSTT-------CSSCTTCBHHHHHTTCSCCCCTHHHHTSSHH
T ss_pred CCCEEECEEHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCC-------CCCCCCCCHHHHHHCCCCCCCCCCCCHHHHC
T ss_conf 99979630479999999999999879999888210--02887-------6888866599982164789876553102204
Q ss_pred ------------------HHHHH----------H-HHHHHHH---HHHHHCCHHHHHHHHHHHH-HHHHCCCCCCEECCC
Q ss_conf ------------------88998----------7-7777654---5542010057899988876-887266122200245
Q gi|254780698|r 134 ------------------ALITR----------S-ANDVSTA---FGEFISGSEKKFAILMSNK-AKKIGMQNTIYKNAS 180 (336)
Q Consensus 134 ------------------~lli~----------S-~NdAa~a---lAe~i~Gs~~~Fv~~MN~~-A~~lGl~~t~f~np~ 180 (336)
...-. + .|-.... +.|.+.| ..|.+.+.++ .+-|||++|.|..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~llg~iie~vtG--~~~~~~~~e~i~~PLGm~~t~~~~~~ 202 (349)
T 1yqs_A 125 PGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAGMLIEKLTG--HSVATEYQNRIFTPLNLTDTFYVHPD 202 (349)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHTSCCSSSTTSCCCCCHHHHHHHHHHHHHHHS--SCHHHHHHHHTTTTTTCTTCBCCTTC
T ss_pred CCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCEECCHHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 4300002344788999999875044579995677643352310221321049--97899999986643299877888960
Q ss_pred ---------CC----------------------CCCCCCCCHHHHHHHHHHHCCCCEEEEE------EEEEEEEEECCEE
Q ss_conf ---------43----------------------3334453013455555420136204677------6115654347869
Q gi|254780698|r 181 ---------GL----------------------HDKNQITTARDQAILGILLRKNFPQYYK------YFSIRKFRYRNRI 223 (336)
Q Consensus 181 ---------Gl----------------------~~~~~~tta~Dla~l~~~~~~~~p~~~~------~~s~~~~~~~~~~ 223 (336)
|. ...+-++|+.||++..++++... +.. ... .........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aggl~st~~Dl~~~~~~l~~g~--~l~~~~~~~~~~-~~~~~~~~~ 279 (349)
T 1yqs_A 203 TVIPGTHANGYLTPDEAGGALVDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSGQ--LMSAAQLAQMQQ-WTTVNSTQG 279 (349)
T ss_dssp CCCCSSBCCCEECCSSTTCCCEECCCCCCTTTGGGTCCEECHHHHHHHHHHHHTTC--SSCHHHHHHHTC-CEEEETTEE
T ss_pred HHCCCHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCHHHHHHHHC-CCCCCCCCC
T ss_conf 21232121242235567872313533465434667641068999999999986699--899999999746-605899986
Q ss_pred ----EEEECHHCCCCCCCE-EEEECCCCCCCCEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf ----972101025768700-56522423337179999997897999998179987899999999999984
Q gi|254780698|r 224 ----ITNHNKLLNKMHNID-GIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELITSFL 288 (336)
Q Consensus 224 ----~~n~N~lL~~~~g~~-G~KTG~T~~AG~clv~~a~~~g~~lI~Vvlg~~s~~~R~~~~~~Ll~~~f 288 (336)
|...+ ...+.. =..+|.+ .|++-......+....|+|+.+..+...-...+.+.+...|
T Consensus 280 yGlG~~~~~----~~~g~~~~~H~G~~--~G~~s~~~~~p~~~~~vv~l~N~~~~~~~~~~i~~~l~~~~ 343 (349)
T 1yqs_A 280 YGLGLRRRD----LSCGISVYGHTGTV--QGYYTYAFASKDGKRSVTALANTSNNVNVLNTMARTLESAF 343 (349)
T ss_dssp ECSSCEEEE----CTTSCEEEEEEEEE--TTEEEEEEECTTSSEEEEEEESEESCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEC----CCCCCEEEEECCCC--CCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 378998740----58996699826747--87239999997799899999979998679999999999996