PSIBLAST alignment of GI: 254780698 and protein with PDB id: 1skf
>gi|157833819|pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15 Dd-Transpeptidase Length = 262
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 20/259 (7%)
Query: 50 AKPKYSSI---VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIF-EYLQSKKLHLNTQI 104
KP +++ ++ K + R S TK+MT ++ + + + Q
Sbjct: 2 TKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQK 61
Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL--- 161
S N S+ +L T Q + L+ S D + A + + A +
Sbjct: 62 AYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSF 121
Query: 162 --MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
N A + + ++ + + + +
Sbjct: 122 IGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTA 181
Query: 220 RNR----------IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
+ N N LL+ G+KTG + + +V + ++ V+
Sbjct: 182 KTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLA 241
Query: 270 MPTSQERDQKALELITSFL 288
+ R+ A +++
Sbjct: 242 STSIPARESDATKIMNYGF 260