PSIBLAST alignment of GI: 254780698 and protein with PDB id: 1skf

>gi|157833819|pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15 Dd-Transpeptidase Length = 262
 Score =  119 bits (298), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 20/259 (7%)

Query: 50  AKPKYSSI---VIDVNKNQMTGFKQDEPRYP-ASLTKMMTLYIIF-EYLQSKKLHLNTQI 104
            KP  +++    ++         K  + R    S TK+MT  ++  +   +    +  Q 
Sbjct: 2   TKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQK 61

Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAIL--- 161
             S      N S+ +L      T  Q +  L+  S  D + A  +       + A +   
Sbjct: 62  AYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKSF 121

Query: 162 --MSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRY 219
               N A      +  + ++          +                 +      + +  
Sbjct: 122 IGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKNSTFRTVVKTKAYTA 181

Query: 220 RNR----------IITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMG 269
           +               N N LL+      G+KTG    + + +V +       ++  V+ 
Sbjct: 182 KTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVLA 241

Query: 270 MPTSQERDQKALELITSFL 288
             +   R+  A +++    
Sbjct: 242 STSIPARESDATKIMNYGF 260