RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter asiaticus str. psy62] (336 letters) >gnl|CDD|182736 PRK10793, PRK10793, D-alanyl-D-alanine carboxypeptidase fraction A; Provisional. Length = 403 Score = 145 bits (367), Expect = 2e-35 Identities = 80/253 (31%), Positives = 134/253 (52%), Gaps = 11/253 (4%) Query: 41 MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99 MI ++ A+ S I+ID N ++ + D R PASLTKMMT Y+I + +++ K Sbjct: 37 MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 93 Query: 100 LNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153 + V A AT NP S ++LK Q I + +S ND A ++++G Sbjct: 94 ETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAG 153 Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213 S+ F LM++ +G++NT ++ GL Q ++ARD A++G L ++ P Y + Sbjct: 154 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYK 213 Query: 214 IRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272 ++F + N N LL + N+DGIKTG+T +G+N+V S +++ VMG T Sbjct: 214 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 273 Query: 273 SQERDQKALELIT 285 + R+ ++ +L+T Sbjct: 274 FKGRETESKKLLT 286 >gnl|CDD|182189 PRK10001, PRK10001, D-alanyl-D-alanine carboxypeptidase fraction C; Provisional. Length = 400 Score = 136 bits (343), Expect = 1e-32 Identities = 85/271 (31%), Positives = 139/271 (51%), Gaps = 11/271 (4%) Query: 26 RNIQLMGKILFLSIIMISMASELHAKPKYSS---IVIDVNKNQ-MTGFKQDEPRYPASLT 81 R + LFL A + P + I++D + + DE PASLT Sbjct: 9 RGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLT 68 Query: 82 KMMTLYIIFEYLQSKKLHLNTQIPVSKTA-ATQNP-----SKLYLKEKTYFTTEQGILAL 135 K+MT Y++ + L++ K+ L + V K A AT NP S ++LK + + Sbjct: 69 KIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGV 128 Query: 136 ITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQA 195 I +S ND A ++++GS++ F LM+ AKK+G+ NT ++ GL Q +TARD A Sbjct: 129 IIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMA 188 Query: 196 ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL-NKMHNIDGIKTGYTRNSGFNIVT 254 +LG L + P+ Y ++F + N N+LL + N+DG+KTG T +G+N+V Sbjct: 189 LLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVA 248 Query: 255 SLRYKDDPIVAVVMGMPTSQERDQKALELIT 285 S D +++VV+G T + R ++ +L+T Sbjct: 249 SATQGDMRLISVVLGAKTDRIRFNESEKLLT 279 >gnl|CDD|183117 PRK11397, dacD, D-alanyl-D-alanine carboxypeptidase; Provisional. Length = 388 Score = 127 bits (320), Expect = 4e-30 Identities = 71/239 (29%), Positives = 130/239 (54%), Gaps = 8/239 (3%) Query: 55 SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTA-AT 112 S +++D Q +T + + R PASLTK+MT Y++ + S ++ + + V + A A Sbjct: 38 SWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAK 97 Query: 113 QNP-----SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAK 167 NP S ++LKE + LI S ND A ++I+G +++F +M+N + Sbjct: 98 DNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVE 157 Query: 168 KIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH 227 K+ +++T ++ GL Q ++A D A+L + P++Y +S + + N Sbjct: 158 KLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNR 217 Query: 228 NKLL-NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285 N LL +K N+DG+KTG+T +GFN++ S ++AVVMG +++ R+++A +L+ Sbjct: 218 NGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEQARKLLR 276 >gnl|CDD|183269 PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional. Length = 306 Score = 50.1 bits (120), Expect = 7e-07 Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 41/237 (17%) Query: 54 YSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV--SKTA 110 S++V+D+N N+ + D AS+TK+MT ++ + KL L+ ++ V S+T Sbjct: 42 GSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLD----AKLPLDEKLKVDISQTP 97 Query: 111 ATQN-------PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163 + S++ K+ +LAL++ S N + + G K F M+ Sbjct: 98 EMKGVYSRVRLNSEISRKDML-------LLALMS-SENRAAASLAHHYPGGYKAFIKAMN 149 Query: 164 NKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFP-------QYYKYFSIRK 216 KAK +GM NT Y +GL N ++TARD L ++ K +P K + RK Sbjct: 150 AKAKALGMTNTRYVEPTGLSIHN-VSTARDLTKL-LIASKQYPLIGQLSTTREKTATFRK 207 Query: 217 FRY----RNRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268 Y RN TNH L+ + + NI KTG+T +G +V + P+ VV+ Sbjct: 208 PNYTLPFRN---TNH--LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNRPVALVVL 259 >gnl|CDD|148653 pfam07168, FAE_3-kCoA_syn1, Fatty acid elongase 3-ketoacyl-CoA synthase 1. This family contains fatty acid elongase 3-ketoacyl-CoA synthase 1, a plant enzyme approximately 350 residues long. Length = 336 Score = 28.3 bits (63), Expect = 2.9 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 9/80 (11%) Query: 106 VSKTAATQNPSKL--YLKEKTYFTTEQGILALITRS-------ANDVSTAFGEFISGSEK 156 V + A N KL + ++ F+ S A+D EF+ EK Sbjct: 147 VHSSNAADNKEKLNAFENYQSEFSISSKERMTRMNSEDLENGEADDAKAGTAEFLVELEK 206 Query: 157 KFAILMSNKAKKIGMQNTIY 176 + AI + K+ IG+ T + Sbjct: 207 RRAIKVFGKSTLIGLVITFF 226 >gnl|CDD|129770 TIGR00687, pyridox_kin, pyridoxal kinase. ThiD and related proteins form an outgroup. Length = 286 Score = 27.5 bits (61), Expect = 5.8 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 16/53 (30%) Query: 231 LNKMHNIDGIKTGYTRNSGF-----NIVTSLR-------YKDDPIVAVVMGMP 271 +NK++ D + +GY ++ IV ++ Y DP VMG P Sbjct: 69 INKLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDP----VMGDP 117 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.131 0.356 Gapped Lambda K H 0.267 0.0692 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,052,003 Number of extensions: 307774 Number of successful extensions: 562 Number of sequences better than 10.0: 1 Number of HSP's gapped: 554 Number of HSP's successfully gapped: 18 Length of query: 336 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 242 Effective length of database: 3,963,321 Effective search space: 959123682 Effective search space used: 959123682 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (25.8 bits)