RPSBLAST alignment of GI: 254780698 and protein with PDBid: 3a3j

>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae} Length = 344
 Score =  168 bits (427), Expect = 1e-42
 Identities = 78/244 (31%), Positives = 137/244 (56%), Gaps = 9/244 (3%)

Query: 47  ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
           ++ A+   + +++D N    +T    D+ +YPASLTKMMT Y++   L+  K+H    + 
Sbjct: 6   QITAQ---TYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVT 62

Query: 106 VSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
           + ++A  +N    SK++L   T  +       +I  S ND + A  E ISG+   F   M
Sbjct: 63  IGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETM 122

Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
           +   ++ G++NT +    GL D NQ ++ARD AI+G  + ++ P+ YK +S + F +   
Sbjct: 123 NKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKI 182

Query: 223 IITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKA 280
              N N  L +K  N+DG+KTG+T  +G+N+V S    +   +++VVMG+PT + R+ ++
Sbjct: 183 KQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVES 242

Query: 281 LELI 284
            +L+
Sbjct: 243 KKLL 246