RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine
carboxypeptidase 1 penicillin-binding protein [Candidatus Liberibacter
asiaticus str. psy62]
(336 letters)
>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A
{Haemophilus influenzae}
Length = 344
Score = 168 bits (427), Expect = 1e-42
Identities = 78/244 (31%), Positives = 137/244 (56%), Gaps = 9/244 (3%)
Query: 47 ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
++ A+ + +++D N +T D+ +YPASLTKMMT Y++ L+ K+H +
Sbjct: 6 QITAQ---TYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVT 62
Query: 106 VSKTAATQN---PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILM 162
+ ++A +N SK++L T + +I S ND + A E ISG+ F M
Sbjct: 63 IGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVETM 122
Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNR 222
+ ++ G++NT + GL D NQ ++ARD AI+G + ++ P+ YK +S + F +
Sbjct: 123 NKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNKI 182
Query: 223 IITNHNK-LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKA 280
N N L +K N+DG+KTG+T +G+N+V S + +++VVMG+PT + R+ ++
Sbjct: 183 KQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVES 242
Query: 281 LELI 284
+L+
Sbjct: 243 KKLL 246
>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding
protein 5*, beta-lactamase, structural GE PSI-2, protein
structure initiative; HET: CIT; 1.75A {Bacillus
subtilis}
Length = 334
Score = 168 bits (426), Expect = 2e-42
Identities = 68/254 (26%), Positives = 116/254 (45%), Gaps = 14/254 (5%)
Query: 45 ASELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
A ++ AK S+I+ID + + + + R AS+TK+MT + E + ++
Sbjct: 4 AIDVSAK---SAIIIDGASGRVLYAKDEHQKRRIASITKIMTAVLAIESGK-----MDQT 55
Query: 104 IPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMS 163
+ VS A S +YL E + + L+ RS ND + A E + GS F +M+
Sbjct: 56 VTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRSGNDAAVAIAEHVGGSLDGFVYMMN 115
Query: 164 NKAKKIGMQNTIYKNASGLHDK-NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR-- 220
KA+++GM+NT ++N GL D N +TA D AIL Y K + ++
Sbjct: 116 QKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILTK-YAMKLKDYQKISGTKIYKAETM 174
Query: 221 NRIITNHNKLLNKMH-NIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQK 279
+ N NKLL ++ G KTGYT+ + +V++ ++AV + P + K
Sbjct: 175 ESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPNDWDDHMK 234
Query: 280 ALELITSFLEKKTL 293
+ + +
Sbjct: 235 MFNYVFEHYQTYLI 248
>1es5_A DD-transpeptidase; penicillin-binding, serine peptidase,
beta-lactamase, hydrolase carboxypeptidase; 1.40A
{Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A
1j9m_A 1esi_A 1es3_A 1es4_A
Length = 262
Score = 162 bits (410), Expect = 1e-40
Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 28/259 (10%)
Query: 47 ELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIP 105
+ A ++ + D R S TK+MT ++ L+L+ ++
Sbjct: 5 TIAAV---GGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLA---QSNLNLDAKVT 58
Query: 106 VSKT----AATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE------ 155
+ K N S+ +L T Q + L+ S D + A +
Sbjct: 59 IQKAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARV 118
Query: 156 KKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIR 215
K F M+ A +G+ NT + + G+ + +T RD + KN + +
Sbjct: 119 KSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIASSAMKN-STFRTVVKTK 177
Query: 216 KFRYRNRIIT----------NHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVA 265
+ + T N N LL+ G+KTG + + +V + ++
Sbjct: 178 AYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIG 237
Query: 266 VVMGMPTSQERDQKALELI 284
V+ + R+ A +++
Sbjct: 238 TVLASTSIPARESDATKIM 256
>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding
protein, BP6, DD-carboxypeptidase, peptidoglycan,
ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A
{Escherichia coli} PDB: 3it9_A* 3itb_A*
Length = 352
Score = 159 bits (403), Expect = 7e-40
Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 11/267 (4%)
Query: 45 ASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQ 103
A + A+ + I++D ++ DE PASLTK+MT Y++ + L++ K+ L
Sbjct: 8 APSVDAR---AWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDM 64
Query: 104 IPVSKTA------ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKK 157
+ V K A A + S ++LK + +I +S ND A ++++GS++
Sbjct: 65 VTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQES 124
Query: 158 FAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKF 217
F LM+ AKK+G+ NT ++ GL Q +TARD A+LG L + P+ Y ++F
Sbjct: 125 FIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEF 184
Query: 218 RYRNRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQER 276
+ N L + N+DG+KTG T +G+N+V S D +++VV+G T + R
Sbjct: 185 TFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIR 244
Query: 277 DQKALELITSFLEKKTLKHQQTHRKDN 303
++ +L+T
Sbjct: 245 FNESEKLLTWGFRFFETVTPIKPDATF 271
>1z6f_A Penicillin-binding protein 5; peptidoglycan synthesis, DD-
carboxypeptidase, hydrolase, boronic acid; HET: BO9;
1.60A {Escherichia coli} SCOP: b.105.1.1 e.3.1.1 PDB:
1nzu_A 1nzo_A* 3beb_A* 3bec_A* 1nj4_A 1hd8_A 1sdn_A
Length = 363
Score = 150 bits (380), Expect = 3e-37
Identities = 74/267 (27%), Positives = 129/267 (48%), Gaps = 11/267 (4%)
Query: 41 MISMASELHAKPKYSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLH 99
MI ++ A+ S I+ID N ++ + D R PASLTKMMT Y+I + +++ K
Sbjct: 8 MIPGVPQIDAE---SYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFK 64
Query: 100 LNTQIPVSKTAA------TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISG 153
+ + A + S ++LK Q I + +S ND A +F +G
Sbjct: 65 ETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAG 124
Query: 154 SEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS 213
S+ F LM++ +G++NT ++ GL Q ++ARD A++G L ++ P Y +
Sbjct: 125 SQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYK 184
Query: 214 IRKFRYRNRIITNH-NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
++F + N L + N+DGIKTG+T +G+N+V S +++ VMG T
Sbjct: 185 EKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRT 244
Query: 273 SQERDQKALELITSFLEKKTLKHQQTH 299
+ R+ ++ +L+T +
Sbjct: 245 FKGREAESKKLLTWGFRFFETVNPLKV 271
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase,
detergent binding, drug design, radiation damage; HET:
MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1
PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A
2h5s_A* 1ong_A* 3c4o_A 3c4p_A 2a3u_A* 1tdg_A* 1tdl_A*
2a49_A* 2g2w_A 1rcj_A* 2h0t_A* 2h0y_A* 2h10_A*
Length = 265
Score = 149 bits (376), Expect = 1e-36
Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 3/235 (1%)
Query: 53 KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
+ I +D+ + +T ++ DE S K++ + + + L +I +
Sbjct: 18 RVGMIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDL 77
Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
T + A IT S N + + G F + + ++
Sbjct: 78 VDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRL 137
Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
T A ++ T A A L LL + ++ +R+ +
Sbjct: 138 DRWETELNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIR 197
Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
+ KTG + IV L + VV+ + + + + I
Sbjct: 198 SVLPAGWFIADKTGASERGARGIVALLGPNNKAERIVVIYLRDTPASMAERNQQI 252
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high
resolution, hydrolase; HET: CB4; 0.85A {Escherichia
coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A*
1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A
1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A*
1jtg_A 1axb_A* ...
Length = 263
Score = 148 bits (373), Expect = 2e-36
Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 3/235 (1%)
Query: 53 KYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAA 111
+ I +D+N + + F+ +E S K++ + + + + L +I S+
Sbjct: 18 RVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDL 77
Query: 112 TQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKI 169
+ T + A IT S N + I G ++ F M + ++
Sbjct: 78 VEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL 137
Query: 170 GMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNK 229
A +++ T A L LL + + +++ +
Sbjct: 138 DRWEPELNEAIPNDERDTTTPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLR 197
Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
K+G I+ +L P VV+ SQ + I
Sbjct: 198 SALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQI 252
>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET:
MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1
Length = 271
Score = 142 bits (358), Expect = 1e-34
Identities = 36/243 (14%), Positives = 86/243 (35%), Gaps = 4/243 (1%)
Query: 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
E +++ + +I+ N ++ +E AS +K+M + + + + + L+ I +
Sbjct: 14 EKYSQGRLGVALINTEDNSQITYRGEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITI 73
Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSN 164
K+ T T + A + S N +++ G K +FA +++
Sbjct: 74 KKSDLVAYSPITEKHLTTGMTLAELSAATLQYSDNTAMNKILDYLGGPAKVTQFARSIND 133
Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGI-LLRKNFPQYYKYFSIRKFRYRNRI 223
++ + N + D T+ A L + + + + N
Sbjct: 134 VTYRLDRKEPEL-NTAIHGDPRDTTSPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTT 192
Query: 224 ITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALEL 283
N K H + G KTG N + + ++ + +V+ ++ + ++
Sbjct: 193 GDNSIKAGLPKHWVVGDKTGSGDYGTTNDIAVIWPENHAPLILVVYFTQQEQNAKYRKDI 252
Query: 284 ITS 286
I
Sbjct: 253 IAK 255
>1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas
maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A
Length = 276
Score = 140 bits (353), Expect = 5e-34
Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 7/228 (3%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
++D + G +QDE S K M + + L+ ++PV + +
Sbjct: 35 LLDTASGRRIGHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPV 94
Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175
T A I S N + + G F + +
Sbjct: 95 TRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEPE 154
Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
+ + ++ T A A L ++ Q + + N +
Sbjct: 155 LNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGKR 214
Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDD--PIVAVVM---GMPTSQERDQ 278
G KTG N + L P V G + ++R
Sbjct: 215 WRVGDKTGSNGEDARNDIAVLWPVAGGAPWVLTAYLQAGAISYEQRAS 262
>3m6b_A Beta-lactamase, penicillinase; alpha-beta structure, antibiotic
resistance, cell membrane, hydrolase, lipoprotein,
membrane; HET: 1RG; 1.30A {Mycobacterium tuberculosis}
PDB: 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 2gdn_A
Length = 265
Score = 139 bits (352), Expect = 6e-34
Identities = 35/235 (14%), Positives = 61/235 (25%), Gaps = 11/235 (4%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
V ++ DE S K + + Q+ HL+ I +
Sbjct: 21 VPATGTTAAIEYRADERFAFCSTFKAPLVAAVLH--QNPLTHLDKLITYTSDDIRSISPV 78
Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
+T T Q A I S + + G + + +G +
Sbjct: 79 AQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADL-GGPGGGTAAFTGYLRSLGDTVSRLD 137
Query: 178 NASGLHDKNQITTARDQ-------AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
+++ RD +L L+ N K + + RN +
Sbjct: 138 AEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRA 197
Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKALELI 284
KTG N + + P V VM D + E +
Sbjct: 198 GFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREAL 252
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine
type D-Ala, D-Ala-carboxypeptidase, hydrolase; HET: ZZ7;
2.00A {Staphylococcus aureus} PDB: 3hum_A*
Length = 453
Score = 134 bits (337), Expect = 3e-32
Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 23/247 (9%)
Query: 55 SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
+S V Q+ D PAS+TK+MT+Y+ E + +L L+ + ++
Sbjct: 72 TSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIM 131
Query: 114 N----PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKI 169
+ S L +T + ++ S+N + + +S + F LM+NKAK I
Sbjct: 132 STLPELSNTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAI 191
Query: 170 GMQNTIYKNASGLHD--------------KNQITTARDQAILGILLRKNFPQYYKYFSIR 215
GM+NT + N +G + + +TTARD AIL + + K P+ +
Sbjct: 192 GMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQL 251
Query: 216 KFRYRNRIITNHNKLLNKMHN----IDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP 271
N L DG+KTG + + +N + + I V+MG
Sbjct: 252 APTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAG 311
Query: 272 TSQERDQ 278
+
Sbjct: 312 DYKNLGG 318
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL,
hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB:
3g2y_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A*
3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A*
1ylw_A 1ylp_A* 1iys_A 2zq8_A* 1we4_A 1bza_A ...
Length = 263
Score = 134 bits (337), Expect = 3e-32
Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 2/234 (0%)
Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
+ +ID N ++ DE S +K+M + + +++K LN + +
Sbjct: 19 RLGVALIDTADNTQVLYRGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLV 78
Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
T + A + S N + G A + + +
Sbjct: 79 NYNPIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLD 138
Query: 173 NTIYK-NASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
T N + D TT R A L L + + + + N +
Sbjct: 139 RTEPTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRA 198
Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
G KTG N + + + + +V Q+ + +++
Sbjct: 199 GLPTSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVL 252
>3cg5_A Beta-lactamase, penicillinase; alpha-beta structure, covalent
adduct, antibiotic resistance, hydrolase, lipoprotein,
membrane; HET: ISS; 1.70A {Mycobacterium tuberculosis}
PDB: 3dwz_A* 2gdn_A
Length = 265
Score = 132 bits (334), Expect = 7e-32
Identities = 38/235 (16%), Positives = 62/235 (26%), Gaps = 11/235 (4%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
V ++ DE S K + + Q+ HL+ I +
Sbjct: 21 VPATGTTAAIEYRADERFAFCSTFKAPLVAAVLH--QNPLTHLDKLITYTSDDIRSISPV 78
Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYK 177
+T T Q A I S + + G + + +G +
Sbjct: 79 AQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGG-GTAAFTGYLRSLGDTVSRLD 137
Query: 178 ------NASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
N D+ TT A +L L+ N K + + RN +
Sbjct: 138 AEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRA 197
Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQKALELI 284
KTG N + + P V VM D + E +
Sbjct: 198 GFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGYDAEPREAL 252
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase,
R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa}
SCOP: e.3.1.1 PDB: 1g68_A
Length = 271
Score = 132 bits (333), Expect = 1e-31
Identities = 33/245 (13%), Positives = 78/245 (31%), Gaps = 4/245 (1%)
Query: 45 ASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQI 104
A E+ + V+D + + ++ S K + + + K++ N+ +
Sbjct: 14 AIEVSLSARIGVSVLDTQNGEYWDYNGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTV 73
Query: 105 PVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILM 162
+ K + + T + A +T S N + + G + F +
Sbjct: 74 EIKKADLVTYSPVIEKQVGQAITLDDACFATMTTSDNTAANIILSAVGGPKGVTDFLRQI 133
Query: 163 SNKAKKIGMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRN 221
+K ++ N L D TT + A L L + + + N
Sbjct: 134 GDKETRLDRIEPDL-NEGKLGDLRDTTTPKAIASTLNKFLFGSALSEMNQKKLESWMVNN 192
Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKAL 281
++ N + + K+G +I + + + V + + +Q ++
Sbjct: 193 QVTGNLLRSVLPAGWNIADKSGAGGFGARSITAVVWSEHQAPIIVSIYLAQTQASMEERN 252
Query: 282 ELITS 286
+ I
Sbjct: 253 DAIVK 257
>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA
bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus
iheyensis}
Length = 260
Score = 130 bits (327), Expect = 6e-31
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 8/234 (3%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
ID ++ ++++E S K + + + + L I S+
Sbjct: 20 AIDTGADKEISYRENERFAYTSTFKPLAVGAVLQ--TKSDEELEETITYSEEDLVTYSPI 77
Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175
T + A I S N E + G ++ + ++ ++ T
Sbjct: 78 TEQHVDEGMTLVEIADAAIRYSDNTAGNLLLEAMGGPDELETILRDIGDETIEMDRYETE 137
Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
A ++ T L + ++ + + N +
Sbjct: 138 LNEAKPGDIRDTSTAKAMATTLQQYVLEDVLDADRREVLTNMLINNTTGDALIRAGVPDG 197
Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKDD--PIVAVVM--GMPTSQERDQKALELIT 285
G KTG N + + + D PIV +M + D K +E T
Sbjct: 198 WTVGDKTGAGGYGTRNDIGIIWPEGDEEPIVIAIMSSRDEEDADYDDKLIEKAT 251
>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance,
hydrolase; 1.60A {Escherichia coli}
Length = 294
Score = 126 bits (318), Expect = 6e-30
Identities = 31/231 (13%), Positives = 64/231 (27%), Gaps = 5/231 (2%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
+D ++ +E S K + Q + L+T I K A
Sbjct: 48 AMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPI 107
Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175
T T + A + S N + + + G F + + ++
Sbjct: 108 SEKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELE 167
Query: 176 YKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
N++ D ++ R L L + + + N + +
Sbjct: 168 L-NSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPA 226
Query: 235 HNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
G KTG G N + + + + + D+ + +I
Sbjct: 227 DWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVI 277
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc
target, SAV0642, PSI, protein structure initiative;
2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Length = 369
Score = 126 bits (317), Expect = 7e-30
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 22/231 (9%)
Query: 72 DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN----PSKLYLKEKTYFT 127
D PAS+TK+MT+Y+ E + +L L+ + ++ + S L +T
Sbjct: 54 DTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQVWT 113
Query: 128 TEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHD--- 184
+ ++ S+N + + +S + F LM+NKAK IGM+NT + N +G +
Sbjct: 114 IADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRL 173
Query: 185 -----------KNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNH----NK 229
+ +TTARD AIL + + K P+ +
Sbjct: 174 RSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEG 233
Query: 230 LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
+ DG+KTG + + +N + + I V+MG + +
Sbjct: 234 AKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGGEK 284
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic
resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis}
PDB: 3b3x_A* 1i2s_A* 1i2w_A* 2blm_A 4blm_A 1mbl_A
Length = 265
Score = 124 bits (311), Expect = 4e-29
Identities = 35/230 (15%), Positives = 66/230 (28%), Gaps = 5/230 (2%)
Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
K +D N+ ++ DE AS K +T+ ++ + Q LN +I ++
Sbjct: 18 KLGIFALDTGTNRTVTYRPDERFAFASTIKALTVGVLLQ--QKSIEDLNQRITYTRDDLV 75
Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN--KAKKIG 170
T T ++ A + S N + I G E L +
Sbjct: 76 NYNPITEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEVTNPE 135
Query: 171 MQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKL 230
+ ++ T L ++ K + + RN +
Sbjct: 136 RFEPELNEVNPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWMKRNTTGDALIRA 195
Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQK 279
KTG N + + DP+V V+ ++
Sbjct: 196 GVPEGWEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLSSRDKKDAKYD 245
>1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase,
antibiotic resistance, class A carbapenemase; 1.64A
{Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A
Length = 265
Score = 123 bits (310), Expect = 4e-29
Identities = 31/237 (13%), Positives = 75/237 (31%), Gaps = 6/237 (2%)
Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
+ +D + ++ +E S K + + Q +L+LN + + +
Sbjct: 18 RIGVYALDTGSGKSFSYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLE 77
Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE---KKFAILMSNKAKKI 169
+ + + A + S N + E G KF + ++ ++
Sbjct: 78 FHSPITTKYKDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRL 137
Query: 170 GMQNTIYKNASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
N + D+ +T A L L N ++ + + + N
Sbjct: 138 DRWELDL-NTAIPGDERDTSTPAAVAKSLKTLALGNILSEHEKETYQTWLKGNTTGAARI 196
Query: 229 KLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
+ + G KTG G N + K+ + + + +++ + ++I
Sbjct: 197 RASVPSDWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTTKNEKEAKHEDKVI 253
>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance,
broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP:
e.3.1.1
Length = 262
Score = 123 bits (308), Expect = 8e-29
Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 6/236 (2%)
Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
++ + + DE S K + + + ++ L+ ++ V A
Sbjct: 17 LIGLYAANLQSGRRITHRPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALV 76
Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
N + T + A + RS N + + I G A S ++ +
Sbjct: 77 PNSPVTEARAGAEMTLAELCQAALQRSDNTAANLLLKTIGGPAAVTAFARSVGDERTRLD 136
Query: 173 NTIY-KNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRNRIITNHNKL 230
N++ D +T A+ + + + N+ + L
Sbjct: 137 RWEVELNSAIPGDPRDTSTPAALAVGYRAILAGDALSPPQRGLLEDWMRANQTSSMRAGL 196
Query: 231 LNKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVM-GMPTSQERDQKALELI 284
KTG N D ++ V+M + + LI
Sbjct: 197 PE--GWTTADKTGSGDYGSTNDAGIAFGPDGQRLLLVMMTRSQAHDPKAENLRPLI 250
>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance,
beta-lactam hydrolysis, benzylpenicillin, cephaloridine;
HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1
PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A
3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A
Length = 258
Score = 122 bits (306), Expect = 1e-28
Identities = 36/241 (14%), Positives = 67/241 (27%), Gaps = 8/241 (3%)
Query: 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
E +D + F D+ AS +K + I+ E Q LN ++ +
Sbjct: 8 EKKYNAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLE--QVPYNKLNKKVHI 65
Query: 107 SKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSN 164
+K L T + I A +T S N + + I G +K + + +
Sbjct: 66 NKDDIVAYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGD 125
Query: 165 KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRII 224
K + + S K+ T A L L+ + N+
Sbjct: 126 KVTNPVRYDIELQYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSG 185
Query: 225 TNHNKLLNKMHNIDGIKTGYTRNSGFN----IVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
K K+G V + ++ + ++
Sbjct: 186 DTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDK 245
Query: 281 L 281
L
Sbjct: 246 L 246
>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance;
1.85A {Streptomyces albus G} SCOP: e.3.1.1
Length = 266
Score = 122 bits (306), Expect = 1e-28
Identities = 32/228 (14%), Positives = 65/228 (28%), Gaps = 7/228 (3%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT----Q 113
D + ++ DE S+ K ++ + L L+ +I ++
Sbjct: 22 AYDTGSGRTVAYRADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGA 81
Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGM 171
+ T E+ IT S N + + G +F + ++ ++
Sbjct: 82 PETGKPQNLANGMTVEELCEVSITASDNCAANLMLRELGGPAAVTRFVRSLGDRVTRLDR 141
Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
+A + + G L+ + + + N + +
Sbjct: 142 WEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRDRRLLTSWLLANTTSGDRFRAG 201
Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMGMPTSQERDQ 278
G KTG R N PIV V+ T Q+ +
Sbjct: 202 LPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKTEQDAAR 249
>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted
mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia
coli} PDB: 2ods_A 2ov5_A* 3e2k_A 3e2l_A*
Length = 264
Score = 120 bits (301), Expect = 5e-28
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 3/230 (1%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
+D ++ +E S K + Q + L+T I K A
Sbjct: 23 AMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNALVPWSPI 82
Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNTI 175
T T + A + S N + + + G F + + ++
Sbjct: 83 SEKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGPAGLTAFMRSIGDTTFRLDRWELE 142
Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
+A ++ + L L + + + N + +
Sbjct: 143 LNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPAD 202
Query: 236 NIDGIKTGYTRNSG-FNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELI 284
G KTG G N + + + + + D+ + +I
Sbjct: 203 WAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVI 252
>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel
beta-sheet, omega-like loop, hydrolase; 2.80A
{Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1
Length = 379
Score = 115 bits (289), Expect = 1e-26
Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 22/246 (8%)
Query: 55 SSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
+I ++ N ++ K +P AS+TK++T+Y+++E L++ + L+T + +S
Sbjct: 16 HAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDISDYPYQL 75
Query: 114 NPSK---LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
+ E +T E+ + A + SAN + A E I+GSEK F +M K + G
Sbjct: 76 TTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRAKLLEWG 135
Query: 171 MQNTIYKNASGLH--------------DKNQITTARDQAILGILLRKNFPQYYKYFSIRK 216
+Q+ N +GL+ D+ +A D AI+ L K +PQ +
Sbjct: 136 IQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLEITKKPS 195
Query: 217 FRYRNRIITNHNK----LLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPT 272
+ IT+ N + DG+KTG T +G + V + K ++ VV+
Sbjct: 196 STFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITVVLNADH 255
Query: 273 SQERDQ 278
Sbjct: 256 QDNNPY 261
>2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2;
penicillin-binding protein, DD-2 carboxypeptidase,
directed evolution; 2.30A {Mycobacterium tuberculosis}
Length = 276
Score = 110 bits (276), Expect = 3e-25
Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 14/235 (5%)
Query: 55 SSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQ 113
+ IV D++ Q + G Q+ PAS K++ + + +L LN+ +
Sbjct: 21 TWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALD-----ELDLNSTVVADVADTQA 75
Query: 114 NPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
+ + +K +T Q + L+ S ND + + G + A + + +G +
Sbjct: 76 ECNCVGVKPGRSYTVRQLLDGLLLVSGNDAANTLAHMLGGQDVTVAKMNAKA-ATLGATS 134
Query: 174 TIYKNASGLHDKNQI--TTARDQAILGILLRKNFPQYYKYFSIRKFRYR----NRIITNH 227
T SGL +TA D ++ P + + + + ++I N
Sbjct: 135 THATTPSGLDGPGGSGASTAHDLVVI-FRAAMANPVFAQIIAEPSAMFPSDDGEQLIVNQ 193
Query: 228 NKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALE 282
++LL + G KTGYT + V + +V +M + +
Sbjct: 194 DELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQ 248
>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase,
thioesterase, DD-peptidase; 1.50A {Synechococcus
elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*
Length = 298
Score = 108 bits (271), Expect = 1e-24
Identities = 36/244 (14%), Positives = 73/244 (29%), Gaps = 8/244 (3%)
Query: 42 ISMASELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLN 101
I +++ D+ AS K L F+ + ++ L
Sbjct: 24 IQQLVSRQPNLTAGLYFFNLDSGASLNVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQ 83
Query: 102 TQIPVSKTA-ATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAI 160
++ + A + + Y K + + + +IT S N + + + A
Sbjct: 84 ERLTMRPDLIAPEAGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRL-----GGAA 138
Query: 161 LMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYR 220
++ + ++ G++NT+ N T+ RD A L + + + + R
Sbjct: 139 ELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLMLKIGQGEILSPRSRDRLLDIMR 198
Query: 221 NRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKA 280
+ KTG + VA +M D +
Sbjct: 199 RTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMV--KRPYNDPRG 256
Query: 281 LELI 284
ELI
Sbjct: 257 SELI 260
>3p09_A Beta-lactamase; structural genomics, center for structural genomics
of infec diseases, csgid, alpha-beta sandwich, cytosol;
HET: MSE; 1.90A {Francisella tularensis subsp}
Length = 290
Score = 108 bits (271), Expect = 2e-24
Identities = 36/245 (14%), Positives = 68/245 (27%), Gaps = 9/245 (3%)
Query: 47 ELHAKPKYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPV 106
E K ++ + + + S+ K + + I +Y + L+ +IP+
Sbjct: 32 ENKYDGKIGIYTLNTDDKTNIKYNESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIPI 91
Query: 107 SKTAATQNPS--KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSN 164
++ + T Q A I + S + G + +
Sbjct: 92 NQDDIGKLGYAPITAKNVGKTLTISQLNYAAILSD-SPASNILVRELGGLQNLNKFIKKL 150
Query: 165 --KAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFS-IRKFRYRN 221
I + N+ TT + L K+ K+ N
Sbjct: 151 GDNDTIITADEPEINYTQPHSNINK-TTPKAITKDIYKLAFGNILDKKHKDIFIKYLQDN 209
Query: 222 RIITNHNKLLNKMHNIDGIKTGYTRNSG-FNIVTSLRYKD-DPIVAVVMGMPTSQERDQK 279
N I G KTG N V + K+ PI ++ + +
Sbjct: 210 NTGANRIAFSMPKDWIIGDKTGTCGQYAATNDVAIIWPKNQQPIALGILYTNPNDKNAPS 269
Query: 280 ALELI 284
E+I
Sbjct: 270 NEEII 274
>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.50A {Enterococcus faecalis V583}
Length = 282
Score = 108 bits (270), Expect = 2e-24
Identities = 24/234 (10%), Positives = 58/234 (24%), Gaps = 17/234 (7%)
Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
+D+ + Y AS K+ ++ + + S + IP +
Sbjct: 51 TVGISYLDLETGEQRSVNGQHEFYTASTIKVPLTMLVADTVASGQKKWTDLIPYNAEEDY 110
Query: 113 QNP-SKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGM 171
+ + + + + IT S N + + G K + K
Sbjct: 111 EEGTGIIAYNIQPEYPLKTLQEYAITYSDNIAKNMLYDTLGGDAKAKREMYQRYLHKTPS 170
Query: 172 QNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
+ ++ D ++ L Y +I + + + +
Sbjct: 171 ------------IEEPQFSSEDALVILQKLYTEKATKPDYQAI--YDSMKQSVFHERMET 216
Query: 232 NKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMPTSQERDQKALELIT 285
K G + + L P + + + +T
Sbjct: 217 PTTQGKVAHKIGSYDEF-IHDMGIL-ETPHPFALAIFTKGPDNAKSAAFIASVT 268
>1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic
resistance, class A cephalosporinase; 1.9A {Pseudomonas
aeruginosa} SCOP: e.3.1.1
Length = 282
Score = 108 bits (269), Expect = 3e-24
Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 12/233 (5%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN--- 114
V + + E S+ K+ ++ + KL LN + V++ QN
Sbjct: 24 VWGPDDLEPLLINPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWA 83
Query: 115 -PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQN 173
K Y ++ +Q + ++ S N E + G + S K+ +
Sbjct: 84 PIMKAYQGDEFSVPVQQLLQYSVSHSDNVACDLLFELVGGPAALHDYIQSMGIKETAVVA 143
Query: 174 TIYK-NASGLHDKNQITTARDQA-ILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLL 231
+ +A T+ + A IL +K + K+ K L
Sbjct: 144 NEAQMHADDQVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGL 203
Query: 232 NKMHNIDGIKTGYTRNSGF-----NIVTSLRYKDD-PIVAVVMGMPTSQERDQ 278
+ KTG ++ N + + D P++ V +++
Sbjct: 204 LPAGTVVAHKTGTSQIKAGKTAATNDLGIILLPDGRPLLVAVFVKDSAESSRT 256
>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A
{Klebsiella pneumoniae}
Length = 287
Score = 107 bits (268), Expect = 3e-24
Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 9/244 (3%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQN-PS 116
++D + G + + S K ++FE + S + ++ + P+
Sbjct: 43 IVDPQGEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSPA 102
Query: 117 KLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEK--KFAILMSNKAKKIGMQNT 174
+ T + A + S N + I G ++ + + ++ +
Sbjct: 103 TERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLDRKEP 162
Query: 175 IYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKM 234
+ + ++ T + +L +I ++ N+ +
Sbjct: 163 EMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRAGFPK 222
Query: 235 HNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM---GMPTSQERDQ---KALELITSFL 288
+ G KTG N G N + + ++ V ++ ERD+ ++IT +
Sbjct: 223 DWVVGEKTGTCANGGRNDIGFFKAQERDYAVAVYTTAPKLSAVERDELVASVGQVITQLI 282
Query: 289 EKKT 292
Sbjct: 283 LSTD 286
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis
hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Length = 307
Score = 106 bits (266), Expect = 5e-24
Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 5/215 (2%)
Query: 58 VIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPSK 117
+D N+ ++ DE AS K +T+ ++ + Q LN +I ++
Sbjct: 65 ALDTGTNRTVTYRPDERFAFASTIKALTVGVLLQ--QKSIEDLNQRITYTRDDLVNYNPI 122
Query: 118 LYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTI-- 175
T T ++ A + S N + I G E L + +
Sbjct: 123 TEKHVDTGMTLKELADASLRYSDNTAQNLILKQIGGPESLKKELRKIGDEVTNPERFEPE 182
Query: 176 YKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMH 235
+ ++ T L ++ K + + RN +
Sbjct: 183 LNEVNPGETQDTSTARALATSLQAFALEDKLPSEKRELLIDWMKRNTTGDALIRAGVPEG 242
Query: 236 NIDGIKTGYTRNSGFNIVTSLRYKD-DPIVAVVMG 269
KTG N + + DP+V V+
Sbjct: 243 WEVADKTGAGSYGTRNDIAIIWPPKGDPVVLAVLS 277
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic
resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Length = 266
Score = 89.4 bits (221), Expect = 9e-19
Identities = 32/204 (15%), Positives = 63/204 (30%), Gaps = 14/204 (6%)
Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
+D + F D+ AS +K + I+ E + K LN ++ ++K
Sbjct: 59 HIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIV 116
Query: 113 QNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQ 172
L T + I A +T S N + + I G +K + + K++G +
Sbjct: 117 AYSPILEKYVGKDITLKALIEASMTYSDNTANNKIIKEIGGIKK-----VKQRLKELGDK 171
Query: 173 NTIYKNASGLHDKNQITTARDQ----AILGILLRKNFPQYYKYFSIRKFRYRNRIITNHN 228
T + + +D A L + + + + +
Sbjct: 172 VTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGD 231
Query: 229 KLLNKMHNID---GIKTGYTRNSG 249
L+ D K+G
Sbjct: 232 TLIKDGVPKDYKVADKSGQAITYA 255
>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A
beta-lactamase fold, transcription regulation,
beta-lactamase induction, transcription; 1.80A
{Streptomyces cacaoi}
Length = 318
Score = 51.8 bits (123), Expect = 2e-07
Identities = 35/279 (12%), Positives = 68/279 (24%), Gaps = 48/279 (17%)
Query: 53 KYSSIVIDVNKNQMTGFKQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
S +V D+ + G D ASL K+ E ++ ++ QI V+ T
Sbjct: 21 TGSFLVRDLYTGEELGIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRIT 80
Query: 113 QN--PSKLYLKEKTYFTTEQGILALITRSANDVSTAFGEFISGSE-----KKFAILMSNK 165
+ + + + S S A E ++ +++
Sbjct: 81 TPGPTGLSRFRHPARVAVDDLLYLSTSVSDGTASDALFEITPPAQVEQMVREWGFRDLTV 140
Query: 166 AKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIIT 225
+ + D + A + + R ++
Sbjct: 141 RHSMRELSETPAERFESADAHLAHALAISAGTSGRGHRVPQLDVARANTGTARAFVDLLE 200
Query: 226 ----------------------NHNKLLNKMHN------------IDGI----KTGYTRN 247
+L M D KTG T
Sbjct: 201 ALWAPVLTGPRPGRTSRALPPEPAARLRELMAANLLRHRLAPDFASDAATWSSKTG-TLL 259
Query: 248 SGFNIVTSLRYKDDP--IVAVVMGMPTSQERDQKALELI 284
+ + V + + D VAV+ + A L+
Sbjct: 260 NLRHEVGVVEHADGQVFAVAVLTESQVPADSQPGAEALM 298
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 49.6 bits (118), Expect = 1e-06
Identities = 64/408 (15%), Positives = 122/408 (29%), Gaps = 153/408 (37%)
Query: 15 LTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAK-----PKYSSIVIDVNKNQMTGF 69
LT +GS+ L + +AS+L + P+ + GF
Sbjct: 9 LTLSHGSLEHV---------LLVPTASFFIASQLQEQFNKILPEPT-----------EGF 48
Query: 70 KQD-EPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAATQNPS--KLYLKEKTYF 126
D EP PA L + ++L ++++ V + Q L L E F
Sbjct: 49 AADDEPTTPAEL--------VGKFLG----YVSSL--VEPSKVGQFDQVLNLCLTE---F 91
Query: 127 TTEQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKN 186
E L ND+ + + ++ K K++ ++N Y A + +
Sbjct: 92 --ENCYLE-----GNDIHALAAKLLQENDTTLV-----KTKEL-IKN--YITARIMAKRP 136
Query: 187 QITTARDQAILGILLRKNFPQYY---------KYFSIRKFR-----YR---NRIITNHNK 229
+ A+ + N YF + R Y +I +
Sbjct: 137 -FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAE 193
Query: 230 LLNKM-HNIDGIKTGYTRNSGFNIVTSLRYKDD--------------PIVAV-------- 266
L+++ + +T+ G NI+ L + P++ V
Sbjct: 194 TLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 267 ---VMGMPTSQERDQKALE--------LIT-----------SFLE--KKTLK-------- 294
++G + R L+ L+T SF +K +
Sbjct: 252 TAKLLGFTPGELRS--YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 295 -HQQTHRKDNLSSTSLKKSL---------M--IKKLKRTYSQFKKIDA 330
++ +L + L+ SL M I L + Q ++
Sbjct: 310 CYEAYPNT-SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYVNK 355
Score = 42.2 bits (99), Expect = 2e-04
Identities = 59/394 (14%), Positives = 102/394 (25%), Gaps = 178/394 (45%)
Query: 14 FLTYPYGSIYIQRNIQLMGKILFLSIIMISMASELHAKP----KYSSIVIDVNKNQMTGF 69
+ TY + I+ + L SEL K + +++ +
Sbjct: 177 YQTYHV---LVGDLIKFSAETL----------SELIRTTLDAEKVFTQGLNI----LEWL 219
Query: 70 KQDEPRYPASLTKMMTLYIIFEYLQSKKLHLNTQIPVS----------KTAAT-----QN 114
+ P +YL S IP+S T
Sbjct: 220 ENPSNT-PDK-----------DYLLS--------IPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 115 PSKLYLKEKTYF--TT--EQGILALITRSANDVSTAFGEFISGSEKKFAILMSNKAKKIG 170
P +L ++Y T QG+ +T A + ++ F K +L IG
Sbjct: 260 PGEL----RSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAITVLFF-----IG 307
Query: 171 ------------------------------M-----------QNTIYK-NASGLHDKNQI 188
M Q+ + K N+ L Q+
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAGKQV 366
Query: 189 TTA----RDQAI----------LGILLRKN----------FPQYYKYFSIRKFRYRNRI- 223
+ + L + LRK P FS RK ++ NR
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-----FSERKLKFSNRFL 421
Query: 224 -ITN--HNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVMGMP-----TSQE 275
+ + H+ LL ++ I L + A + +P +
Sbjct: 422 PVASPFHSHLLVPASDL--------------INKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 276 -RDQKA------LELITS---FLEKKTLKHQQTH 299
R ++ I E T + + TH
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWE-TTTQFKATH 500
Score = 28.8 bits (64), Expect = 1.7
Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 45/115 (39%)
Query: 254 TSLRYKDDPIV------AVVMGMPT------SQERDQ--KAL-----------------E 282
S R P+ V+ +PT SQ ++Q K L E
Sbjct: 4 YSTR----PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 283 LITSFLE---KKTLKHQQTHRKDNLSSTSLKKSLMIKKLKRTYSQFKKIDAKAHS 334
L+ FL + L L + + + Y + I A A
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQ-----VLN--LCLTEFENCYLEGNDIHALAAK 107
>3a3d_A PBP4, penicillin-binding protein 4; DACB, hydrolase; 1.60A
{Haemophilus influenzae} PDB: 3a3e_A* 3a3f_A* 3a3i_A*
Length = 453
Score = 32.9 bits (74), Expect = 0.11
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 41 MISMASELHAKPKYSSI---VIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
MI+++ P+ S+ ++N+NQ + + PAS K+ T L
Sbjct: 1 MINVSDLTQKLPEGSNAGVIAKNINQNQIIADYNGSTFMLPASTQKVFTAVAAKLAL 57
>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 2.20A
{Mycobacterium bovis}
Length = 280
Score = 32.8 bits (74), Expect = 0.12
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 78 ASLTKMMTLYIIFEYLQSKKLHLNTQIPVSKTAAT 112
AS+TK + ++ ++L+T P +T
Sbjct: 39 ASVTKPLVARAAQVAVEEGVVNLDT--PAGPPGST 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.3 bits (72), Expect = 0.15
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 289 EKKTLKHQQTHRK---DNLSSTSLK-KSLM 314
EK+ LK Q K D+ S+ +L K+ M
Sbjct: 18 EKQALKKLQASLKLYADD-SAPALAIKATM 46
Score = 27.3 bits (59), Expect = 5.7
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 18/44 (40%)
Query: 70 KQDEPRYPASLTKMMTLYIIFEYLQ-SKKLHLNTQIPVSKTAAT 112
KQ +L K LQ S KL+ + P AT
Sbjct: 19 KQ-------ALKK----------LQASLKLYADDSAPALAIKAT 45
>2ex2_A Penicillin-binding protein 4; cephem, penem, D-
alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine-
endopeptidase, hydrolase; 1.55A {Escherichia coli}
SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A*
2exb_A*
Length = 458
Score = 30.3 bits (67), Expect = 0.60
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 46 SELHAKPKYSSIVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
++L A + +V V + + + PAS K++T L
Sbjct: 9 TQLPAGANLALMVQKVGASAPAIDYHSQQMALPASTQKVITALAALIQL 57
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A
{Aspergillus niger} SCOP: b.80.1.3
Length = 336
Score = 29.2 bits (65), Expect = 1.4
Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 186 NQITTARDQAILGILLRKNFPQYYKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYT 245
I D GI + KN P + I N + N HN DG +
Sbjct: 103 MYIHDVEDSTFKGINI-KNTPVQAISVQATNVHLNDFTIDNSDGDDNGGHNTDGFDISES 161
Query: 246 RN 247
Sbjct: 162 TG 163
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding,
peptidoglycan, transpeptidase, antibiotic resistance,
hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB:
1w8q_A 1w8y_A* 2vgj_A* 2vgk_A*
Length = 489
Score = 29.1 bits (64), Expect = 1.7
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 57 IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
+V+D + + E PAS K+ T E L
Sbjct: 26 VVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALEVL 63
>1w5d_A Penicillin-binding protein; D-Ala-D-Ala-carboxypeptidase,
peptidoglycan, beta-lactam, hydrolase, peptidoglycan
synthesis; 2.1A {Bacillus subtilis} SCOP: e.3.1.3 PDB:
2j9p_A*
Length = 462
Score = 27.6 bits (60), Expect = 3.8
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 57 IVIDVNKNQ-MTGFKQDEPRYPASLTKMMTLYIIFEYL 93
V + D PAS K++T L
Sbjct: 29 TVRSAETGAVLYEHSGDTRMRPASSLKLLTAAAALSVL 66
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.131 0.356
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,568,650
Number of extensions: 113624
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 52
Length of query: 336
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 243
Effective length of database: 3,438,538
Effective search space: 835564734
Effective search space used: 835564734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)