BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780699|ref|YP_003065112.1| hypothetical protein
CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62]
(97 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040376|gb|ACT57172.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSR 60
MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSR
Sbjct: 1 MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSR 60
Query: 61 AWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKNKKI 97
AWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKNKKI
Sbjct: 61 AWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKNKKI 97
>gi|315121864|ref|YP_004062353.1| hypothetical protein CKC_00570 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495266|gb|ADR51865.1| hypothetical protein CKC_00570 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 101
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 81/95 (85%), Gaps = 1/95 (1%)
Query: 1 MLFDNQFIENILKEDREDNNIKSLAQ-LQRIAIRTVLANRTKNIKSITKEFMEYWIAHSS 59
M FDNQF+ENILK+ R++N KSL+Q LQ IA+ +LANRTKNIKSITKEF+EYW+ ++S
Sbjct: 1 MAFDNQFLENILKKSRKENLNKSLSQALQGIALHAILANRTKNIKSITKEFIEYWMTYNS 60
Query: 60 RAWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKN 94
RAWR+S+ R YLN+HI+S+ KK+P+ I +GNI+KN
Sbjct: 61 RAWRSSQARAYLNIHISSRGKKVPIYISLGNIEKN 95
>gi|222148620|ref|YP_002549577.1| hypothetical protein Avi_2192 [Agrobacterium vitis S4]
gi|221735606|gb|ACM36569.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 95
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 23 SLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQS 79
SL L A+R LA+ ++ TKE M + H +RAWR S+P ++LH+A S
Sbjct: 31 SLNPLHEAAMR--LADGINKPRARTKELMSLLLCHGARAWRYSQPEANIHLHVAPHS 85
>gi|15888831|ref|NP_354512.1| hypothetical protein Atu1506 [Agrobacterium tumefaciens str. C58]
gi|15156591|gb|AAK87297.1| hypothetical protein Atu1506 [Agrobacterium tumefaciens str. C58]
Length = 86
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 44 KSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
K+ T++ + ++H +RAWR ++P ++LH+A +S + P+ I I
Sbjct: 41 KAKTRDLVSLLLSHGARAWRANQPEARIHLHVAHRSGRAPIHIRI 85
>gi|15965163|ref|NP_385516.1| hypothetical protein SMc01068 [Sinorhizobium meliloti 1021]
gi|307309176|ref|ZP_07588847.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307321506|ref|ZP_07600901.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15074343|emb|CAC45989.1| Hypothetical/unknown protein [Sinorhizobium meliloti 1021]
gi|306892813|gb|EFN23604.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306900322|gb|EFN30938.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 89
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 44 KSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
K+ T++ + + H +RAWR+++PR ++LH+A+ + P+ I +
Sbjct: 44 KAKTRDLVGMLLTHGARAWRSTQPRAGIHLHVAAPGRSRPLRIRL 88
>gi|325292860|ref|YP_004278724.1| hypothetical protein AGROH133_06134 [Agrobacterium sp. H13-3]
gi|325060713|gb|ADY64404.1| hypothetical protein AGROH133_06134 [Agrobacterium sp. H13-3]
Length = 86
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 44 KSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
K+ T++ + ++H +RAWR ++P ++LH+ +S + PV I I
Sbjct: 41 KAKTRDLVSLLLSHGARAWRANQPEANIHLHVGRRSGRAPVHIRI 85
>gi|222086065|ref|YP_002544597.1| hypothetical protein Arad_2493 [Agrobacterium radiobacter K84]
gi|221723513|gb|ACM26669.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 91
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 23 SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSK 80
+L L A+R + NR+++ +S TK+ + + H +RAWR S+P + LHI S +
Sbjct: 24 ALHPLHEAALRLADLGLNRSRS-RSKTKDLIGILLCHGARAWRYSQPEANIRLHITSPNG 82
Query: 81 KIPVSIYI 88
+ PV + +
Sbjct: 83 QAPVQLRV 90
>gi|150396260|ref|YP_001326727.1| hypothetical protein Smed_1039 [Sinorhizobium medicae WSM419]
gi|150027775|gb|ABR59892.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 89
Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 1 MLFDNQFIENILKEDREDNNIK-SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAH 57
M + + + DR+ N + L L A+R + NR+K + T++ + + H
Sbjct: 1 MAVNENVPGDTMVPDRKANPARVRLHPLHEAAMRIADIGLNRSK---AKTRDLVGMLLTH 57
Query: 58 SSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
+RAWR+++PR ++LH+ + + P+ I +
Sbjct: 58 GARAWRSTQPRADIHLHVTALGRSHPLRIRL 88
>gi|209549454|ref|YP_002281371.1| hypothetical protein Rleg2_1860 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|241204781|ref|YP_002975877.1| hypothetical protein Rleg_2060 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|209535210|gb|ACI55145.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|240858671|gb|ACS56338.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 91
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 23 SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSK 80
SL L A+R + R K T++ + + H +RAWR S+P ++LH+ S
Sbjct: 23 SLHPLHEAAMRLAEIGLQRPKAKSPKTRDLINLLLCHGARAWRYSQPEARIHLHVTSPDG 82
Query: 81 KIPVSIYI 88
PV + +
Sbjct: 83 SAPVQLRL 90
>gi|116252288|ref|YP_768126.1| hypothetical protein RL2542 [Rhizobium leguminosarum bv. viciae
3841]
gi|115256936|emb|CAK08030.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 91
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 23 SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSK 80
SL L A+R + R K T++ + + H +RAWR S+P ++LH+ S
Sbjct: 23 SLHPLHEAALRLAEIGLPRPKAKSPKTRDLINLLLCHGARAWRYSQPEARIHLHVTSPDG 82
Query: 81 KIPVSIYI 88
PV + +
Sbjct: 83 SAPVQLRL 90
>gi|86357828|ref|YP_469720.1| hypothetical protein RHE_CH02212 [Rhizobium etli CFN 42]
gi|86281930|gb|ABC90993.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 91
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSK 80
SL L A+R + R + + T++ + + H +RAWR S+P ++LH+ S
Sbjct: 23 SLHPLHEAALRLAEIGLQRPRAKSAKTRDLINLLLCHGARAWRYSQPEARIHLHVTSPDG 82
Query: 81 KIPVSIYI 88
PV + +
Sbjct: 83 SAPVQLRL 90
>gi|218462488|ref|ZP_03502579.1| hypothetical protein RetlK5_24823 [Rhizobium etli Kim 5]
gi|218674959|ref|ZP_03524628.1| hypothetical protein RetlG_27770 [Rhizobium etli GR56]
Length = 91
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 RTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
R K+ K T++ + + H +RAWR S+P ++LH+ S PV + +
Sbjct: 43 RAKSAK--TRDLINLLLCHGARAWRYSQPEARIHLHVTSPDGSAPVQLRL 90
>gi|190891892|ref|YP_001978434.1| hypothetical protein RHECIAT_CH0002301 [Rhizobium etli CIAT 652]
gi|190697171|gb|ACE91256.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 91
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 RTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
R K+ K T++ + + H +RAWR S+P ++LH+ S PV + +
Sbjct: 43 RAKSAK--TRDLINLLLCHGARAWRYSQPEARIHLHVTSPDGSAPVQLRL 90
>gi|218515844|ref|ZP_03512684.1| hypothetical protein Retl8_20236 [Rhizobium etli 8C-3]
Length = 82
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 RTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
R K+ K T++ + + H +RAWR S+P ++LH+ S PV + +
Sbjct: 34 RAKSAK--TRDLINLLLCHGARAWRYSQPEARIHLHVTSPDGSAPVQLRL 81
>gi|319405850|emb|CBI79482.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 91
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 ENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSI-TKEFMEYWIAHSSRAWRTSKP 67
E +LK+ ++ SL L A T LAN N ++ T + +I ++R R + P
Sbjct: 12 EKLLKQP----SLLSLRSLHEAA--TKLANSKHNSTTLNTHSLVSLFICQTTRNRRLAMP 65
Query: 68 RTYLNLHIASQSKKIPVSIYIGNIQK 93
+++L +AS++ +PV + +G K
Sbjct: 66 SVHIHLRVASKTGSVPVKLRLGATNK 91
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040376|gb|ACT57172.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSR 60
MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSR
Sbjct: 1 MLFDNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSR 60
Query: 61 AWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKNKKI 97
AWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKNKKI
Sbjct: 61 AWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKNKKI 97
>gi|315121864|ref|YP_004062353.1| hypothetical protein CKC_00570 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495266|gb|ADR51865.1| hypothetical protein CKC_00570 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 101
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/95 (64%), Positives = 81/95 (85%), Gaps = 1/95 (1%)
Query: 1 MLFDNQFIENILKEDREDNNIKSLAQ-LQRIAIRTVLANRTKNIKSITKEFMEYWIAHSS 59
M FDNQF+ENILK+ R++N KSL+Q LQ IA+ +LANRTKNIKSITKEF+EYW+ ++S
Sbjct: 1 MAFDNQFLENILKKSRKENLNKSLSQALQGIALHAILANRTKNIKSITKEFIEYWMTYNS 60
Query: 60 RAWRTSKPRTYLNLHIASQSKKIPVSIYIGNIQKN 94
RAWR+S+ R YLN+HI+S+ KK+P+ I +GNI+KN
Sbjct: 61 RAWRSSQARAYLNIHISSRGKKVPIYISLGNIEKN 95
>gi|15965163|ref|NP_385516.1| hypothetical protein SMc01068 [Sinorhizobium meliloti 1021]
gi|307309176|ref|ZP_07588847.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307321506|ref|ZP_07600901.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15074343|emb|CAC45989.1| Hypothetical/unknown protein [Sinorhizobium meliloti 1021]
gi|306892813|gb|EFN23604.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306900322|gb|EFN30938.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 89
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 44 KSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
K+ T++ + + H +RAWR+++PR ++LH+A+ + P+ I +
Sbjct: 44 KAKTRDLVGMLLTHGARAWRSTQPRAGIHLHVAAPGRSRPLRIRL 88
>gi|150396260|ref|YP_001326727.1| hypothetical protein Smed_1039 [Sinorhizobium medicae WSM419]
gi|150027775|gb|ABR59892.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 89
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 1 MLFDNQFIENILKEDREDNNIK-SLAQLQRIAIRT--VLANRTKNIKSITKEFMEYWIAH 57
M + + + DR+ N + L L A+R + NR+K + T++ + + H
Sbjct: 1 MAVNENVPGDTMVPDRKANPARVRLHPLHEAAMRIADIGLNRSK---AKTRDLVGMLLTH 57
Query: 58 SSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
+RAWR+++PR ++LH+ + + P+ I +
Sbjct: 58 GARAWRSTQPRADIHLHVTALGRSHPLRIRL 88
>gi|15888831|ref|NP_354512.1| hypothetical protein Atu1506 [Agrobacterium tumefaciens str. C58]
gi|15156591|gb|AAK87297.1| hypothetical protein Atu1506 [Agrobacterium tumefaciens str. C58]
Length = 86
Score = 42.3 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 44 KSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
K+ T++ + ++H +RAWR ++P ++LH+A +S + P+ I I
Sbjct: 41 KAKTRDLVSLLLSHGARAWRANQPEARIHLHVAHRSGRAPIHIRI 85
>gi|222086065|ref|YP_002544597.1| hypothetical protein Arad_2493 [Agrobacterium radiobacter K84]
gi|221723513|gb|ACM26669.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 91
Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 38 NRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
NR+++ +S TK+ + + H +RAWR S+P + LHI S + + PV + +
Sbjct: 41 NRSRS-RSKTKDLIGILLCHGARAWRYSQPEANIRLHITSPNGQAPVQLRV 90
>gi|325292860|ref|YP_004278724.1| hypothetical protein AGROH133_06134 [Agrobacterium sp. H13-3]
gi|325060713|gb|ADY64404.1| hypothetical protein AGROH133_06134 [Agrobacterium sp. H13-3]
Length = 86
Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 44 KSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
K+ T++ + ++H +RAWR ++P ++LH+ +S + PV I I
Sbjct: 41 KAKTRDLVSLLLSHGARAWRANQPEANIHLHVGRRSGRAPVHIRI 85
>gi|86357828|ref|YP_469720.1| hypothetical protein RHE_CH02212 [Rhizobium etli CFN 42]
gi|86281930|gb|ABC90993.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 91
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 23 SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSK 80
SL L A+R + R + + T++ + + H +RAWR S+P ++LH+ S
Sbjct: 23 SLHPLHEAALRLAEIGLQRPRAKSAKTRDLINLLLCHGARAWRYSQPEARIHLHVTSPDG 82
Query: 81 KIPVSIYI 88
PV + +
Sbjct: 83 SAPVQLRL 90
>gi|116252288|ref|YP_768126.1| hypothetical protein RL2542 [Rhizobium leguminosarum bv. viciae
3841]
gi|115256936|emb|CAK08030.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 91
Score = 39.2 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 23 SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSK 80
SL L A+R + R K T++ + + H +RAWR S+P ++LH+ S
Sbjct: 23 SLHPLHEAALRLAEIGLPRPKAKSPKTRDLINLLLCHGARAWRYSQPEARIHLHVTSPDG 82
Query: 81 KIPVSIYI 88
PV + +
Sbjct: 83 SAPVQLRL 90
>gi|218462488|ref|ZP_03502579.1| hypothetical protein RetlK5_24823 [Rhizobium etli Kim 5]
gi|218674959|ref|ZP_03524628.1| hypothetical protein RetlG_27770 [Rhizobium etli GR56]
Length = 91
Score = 39.2 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 RTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
R K+ K T++ + + H +RAWR S+P ++LH+ S PV + +
Sbjct: 43 RAKSAK--TRDLINLLLCHGARAWRYSQPEARIHLHVTSPDGSAPVQLRL 90
>gi|218515844|ref|ZP_03512684.1| hypothetical protein Retl8_20236 [Rhizobium etli 8C-3]
Length = 82
Score = 39.2 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 RTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
R K+ K T++ + + H +RAWR S+P ++LH+ S PV + +
Sbjct: 34 RAKSAK--TRDLINLLLCHGARAWRYSQPEARIHLHVTSPDGSAPVQLRL 81
>gi|222148620|ref|YP_002549577.1| hypothetical protein Avi_2192 [Agrobacterium vitis S4]
gi|221735606|gb|ACM36569.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 95
Score = 39.2 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 19 NNIKSLAQLQRIAIRTVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQ 78
N SL L A+R LA+ ++ TKE M + H +RAWR S+P ++LH+A
Sbjct: 27 NPRASLNPLHEAAMR--LADGINKPRARTKELMSLLLCHGARAWRYSQPEANIHLHVAPH 84
Query: 79 S 79
S
Sbjct: 85 S 85
>gi|190891892|ref|YP_001978434.1| hypothetical protein RHECIAT_CH0002301 [Rhizobium etli CIAT 652]
gi|190697171|gb|ACE91256.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 91
Score = 39.2 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 39 RTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSKKIPVSIYI 88
R K+ K T++ + + H +RAWR S+P ++LH+ S PV + +
Sbjct: 43 RAKSAK--TRDLINLLLCHGARAWRYSQPEARIHLHVTSPDGSAPVQLRL 90
>gi|209549454|ref|YP_002281371.1| hypothetical protein Rleg2_1860 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|241204781|ref|YP_002975877.1| hypothetical protein Rleg_2060 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|209535210|gb|ACI55145.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|240858671|gb|ACS56338.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 91
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 23 SLAQLQRIAIR--TVLANRTKNIKSITKEFMEYWIAHSSRAWRTSKPRTYLNLHIASQSK 80
SL L A+R + R K T++ + + H +RAWR S+P ++LH+ S
Sbjct: 23 SLHPLHEAAMRLAEIGLQRPKAKSPKTRDLINLLLCHGARAWRYSQPEARIHLHVTSPDG 82
Query: 81 KIPVSIYI 88
PV + +
Sbjct: 83 SAPVQLRL 90
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.318 0.138 0.385
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,634,422,612
Number of Sequences: 14124377
Number of extensions: 49551653
Number of successful extensions: 135121
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 135090
Number of HSP's gapped (non-prelim): 33
length of query: 97
length of database: 4,842,793,630
effective HSP length: 66
effective length of query: 31
effective length of database: 3,910,584,748
effective search space: 121228127188
effective search space used: 121228127188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.8 bits)