RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780699|ref|YP_003065112.1| hypothetical protein
CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)



>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 24.1 bits (52), Expect = 3.2
 Identities = 5/20 (25%), Positives = 13/20 (65%)

Query: 76  ASQSKKIPVSIYIGNIQKNK 95
           A+  K +P+  ++ ++ K+K
Sbjct: 121 AAAEKNVPLYKHLADLSKSK 140


>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha
           chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
          Length = 202

 Score = 23.5 bits (50), Expect = 4.7
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 62  WRTSKPRTYLNLHIASQSKKIPVSIY 87
           + T KP        ++Q+  I + I+
Sbjct: 108 FNTIKPGAVPGRKGSTQAPHISLIIF 133


>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 296

 Score = 22.8 bits (47), Expect = 7.5
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 50  FMEYWIAHSSRAWRTSKPRTYLNLHIAS 77
           F    + H S   +T   R  ++ H AS
Sbjct: 215 FFHPLLIHGSGQNKTQGFRKAISCHFAS 242


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,442
Number of extensions: 12660
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 14
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)