HHsearch alignment for GI: 254780700 and conserved domain: COG0265
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones].
Probab=98.24 E-value=2e-05 Score=53.23 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=62.8
Q ss_pred CCEEEEECCHHHC----CEEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 5469872896571----520079996068897898299988899988999938999999999988625995699999717
Q gi|254780700|r 394 LGMVLQDINDGNK----KLVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYD 469 (489)
Q Consensus 394 lGl~v~~l~~~~~----~~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~ 469 (489)
T Consensus 251 lgv~~~~~~~~~~~g~~~~~G~~V~~v~~~spa~~agi~~Gdii~~~ng~~v~~~~~l~~~v~~~~--~g~~v~~~~~r~ 328 (347)
T COG0265 251 LGVIGEPLTADIALGLPVAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNR--PGDEVALKLLRG 328 (347)
T ss_pred CCEEEEECCCHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHCCC--CCCEEEEEEEEC
T ss_conf 542768745110268767887688651799857873787787799789988557888888873269--997688999978
Q ss_pred CCCCCCCCCCEEEEEEECC
Q ss_conf 7643346884368887528
Q gi|254780700|r 470 PDMQSGNDNMSRFVSLKID 488 (489)
Q Consensus 470 ~~~~~~~~~~~rFVal~ld 488 (489)
T Consensus 329 --------g~~~~~~v~l~ 339 (347)
T COG0265 329 --------GKERELAVTLG 339 (347)
T ss_pred --------CEEEEEEEECC
T ss_conf --------83577768615