HHsearch alignment for GI: 254780700 and conserved domain: COG3975
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only].
Probab=95.91 E-value=0.027 Score=33.26 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCCEEEEECCHHH--------CCEEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 2546987289657--------15200799960688978982999888999889999389999999999886259956999
Q gi|254780700|r 393 LLGMVLQDINDGN--------KKLVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLL 464 (489)
Q Consensus 393 ~lGl~v~~l~~~~--------~~~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL 464 (489)
T Consensus 438 ~~gL~~~~~~~~~~~LGl~v~~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s-~~l~~-------~~~--~d~i~v 507 (558)
T COG3975 438 RFGLTFTPKPREAYYLGLKVKSEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGIS-DQLDR-------YKV--NDKIQV 507 (558)
T ss_pred HCCEEEEECCCCCCCCCEEECCCCCEEEEEECCCCCHHHHCCCCCCCEEEEECCCC-CCCCC-------CCC--CCCEEE
T ss_conf 23348874688876543586056880699844789816751588756799976735-55221-------442--662489
Q ss_pred EEEECCCCC
Q ss_conf 997177643
Q gi|254780700|r 465 QIKYDPDMQ 473 (489)
Q Consensus 465 ~V~r~~~~~ 473 (489)
T Consensus 508 ~~~~~~~L~ 516 (558)
T COG3975 508 HVFREGRLR 516 (558)
T ss_pred EECCCCCEE
T ss_conf 982578238