HHsearch alignment for GI: 254780700 and conserved domain: cd00986
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.56 E-value=3.5e-16 Score=121.76 Aligned_cols=73 Identities=27% Similarity=0.447 Sum_probs=69.9
Q ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEECCCCCCCC
Q ss_conf 44113201111121134671167888752431478743101222035667520101204781665125565587
Q gi|254780700|r 305 TKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVVLGSSP 378 (489)
Q Consensus 305 ~~GvlV~~V~~~sPA~~AGLk~GDvI~~ing~~I~~~~~l~~~i~~~~~G~~v~l~v~R~g~~~~~~V~l~~~p 378 (489)
T Consensus 7 ~~Gv~V~~V~~gsPA~~~-Lk~GDvI~~vdGk~v~~~~~l~~~i~~~~~Gd~V~l~v~R~gk~~~~~vtL~~~P 79 (79)
T cd00986 7 YHGVYVTSVVEGMPAAGK-LKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILKTFP 79 (79)
T ss_pred CCEEEEEEECCCCCHHHC-CCCCCEEEEECCEECCCHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEEEECCC
T ss_conf 781899996799973770-7789999999998957999999999659999989999999999999999972489