HHsearch alignment for GI: 254780700 and conserved domain: cd00988
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.59 E-value=5.8e-07 Score=63.00 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=58.3
Q ss_pred CCEEEEECCHHHCCEEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 54698728965715200799960688978982999888999889999389999999999886259956999997177643
Q gi|254780700|r 394 LGMVLQDINDGNKKLVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQ 473 (489)
Q Consensus 394 lGl~v~~l~~~~~~~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~~~~~ 473 (489)
T Consensus 4 iGi~~~~~------~~~~~V~~v~~gsPA~~aGl~~GD~I~~Vng~~v~~~-~~~~~~~~lrg~~Gt~V~l~v~R~~--- 73 (85)
T cd00988 4 IGLELKYD------DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGL-SLEDVVKLLRGKAGTKVRLTLKRGD--- 73 (85)
T ss_pred EEEEEEEE------CCEEEEEEECCCCHHHHHCCCCCCEEEEECCEECCCC-CHHHHHHHHCCCCCCEEEEEEECCC---
T ss_conf 99999997------9989999968999589808999999999999997899-9999999865999988999999099---
Q ss_pred CCCCCCEEEEEEECCC
Q ss_conf 3468843688875289
Q gi|254780700|r 474 SGNDNMSRFVSLKIDK 489 (489)
Q Consensus 474 ~~~~~~~rFVal~ldk 489 (489)
T Consensus 74 ----~~~~~~~l~R~k 85 (85)
T cd00988 74 ----GEPREVTLTRLK 85 (85)
T ss_pred ----CCEEEEEEEECC
T ss_conf ----989999999897