>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

Probab=99.25 E-value=4.8e-13 Score=101.79 Aligned_cols=66 Identities=32% Similarity=0.544 Sum_probs=61.1 Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEECCC Q ss_conf 1132011111211346711678887524314787431012220356675201012047816651255 Q gi|254780700|r 307 GSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVV 373 (489) Q Consensus 307 GvlV~~V~~~sPA~~AGLk~GDvI~~ing~~I~~~~~l~~~i~~~~~G~~v~l~v~R~g~~~~~~V~ 373 (489) T Consensus 13 ~~vV~~V~~~spA~~AGl~~GD~I~~ing~~v~~~~~~~~~i~~-~~~~~i~l~v~R~g~~~~~~vt 78 (79) T cd00989 13 EPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLVDAVQE-NPGKPLTLTVERNGETITLTLT 78 (79) T ss_pred CCEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHH-CCCCEEEEEEEECCEEEEEEEE T ss_conf 99999989999899859999999999999995899999999985-8998899999999999899987

HHsearch alignment for GI: 254780700 and conserved domain: cd00989