HHsearch alignment for GI: 254780700 and conserved domain: cd00990
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.50 E-value=9.3e-07 Score=61.71 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=54.6
Q ss_pred CCCCEEEEECCHHHCCEEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 52546987289657152007999606889789829998889998899993899999999998862599569999971776
Q gi|254780700|r 392 ELLGMVLQDINDGNKKLVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPD 471 (489)
Q Consensus 392 ~~lGl~v~~l~~~~~~~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~~~ 471 (489)
T Consensus 1 P~lGi~~~~------~~g~~~V~~V~~~sPA~~AGl~~GD~IvaidG~~v~~~~~~---~~~~~--~G~~v~l~v~R~g~ 69 (80)
T cd00990 1 PYLGLTLDK------EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDALQDR---LKEYQ--AGDPVELTVFRDDR 69 (80)
T ss_pred CCCCEEEEC------CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEEHHHHHH---HHHCC--CCCEEEEEEEECCE
T ss_conf 956669865------69959999988899699859998999999999992378999---97369--98989999999999
Q ss_pred CC
Q ss_conf 43
Q gi|254780700|r 472 MQ 473 (489)
Q Consensus 472 ~~ 473 (489)
T Consensus 70 l~ 71 (80)
T cd00990 70 LI 71 (80)
T ss_pred EE
T ss_conf 99