HHsearch alignment for GI: 254780700 and conserved domain: cd00992
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.09 E-value=4.4e-07 Score=63.80 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=41.5
Q ss_pred CCCCEEEEECCHHHCCEEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECC--CHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 525469872896571520079996068897898299988899988999938--999999999988625995699999
Q gi|254780700|r 392 ELLGMVLQDINDGNKKLVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVS--CIKDVERLIGKAKEKKRDSVLLQI 466 (489)
Q Consensus 392 ~~lGl~v~~l~~~~~~~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~--s~~dl~~iL~~~k~~~~~~VLL~V 466 (489)
T Consensus 12 ~~lG~~l~~~~~~---~~~~~I~~v~~~s~A~~~~L~~GD~Il~INg~~v~~~~~~~v~~~l~~~---~-~~v~L~V 81 (82)
T cd00992 12 GGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNS---G-DEVTLTV 81 (82)
T ss_pred CCCCEEEECCCCC---CCCEEEEEECCCCCHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCC---C-CEEEEEE
T ss_conf 9617899622579---9999999986899034348999999898999999999899999999849---9-9599998