HHsearch alignment for GI: 254780700 and conserved domain: pfam00089

>pfam00089 Trypsin Trypsin.
Probab=99.21  E-value=8.1e-11  Score=87.58  Aligned_cols=139  Identities=27%  Similarity=0.381  Sum_probs=83.9

Q ss_pred             CCEEEEEECCCCEEEECHHCCCCCCEEEEECCC-------CE--EEEE-CCCC---CCC--CCCEEEEEEECCC----CC
Q ss_conf             340278975996298510104787143796289-------80--6740-1112---334--4432899960676----67
Q gi|254780700|r  109 MFGSGFFITDDGYILTSNHIVEDGASFSVILSD-------DT--ELPA-KLVG---TDA--LFDLAVLKVQSDR----KF  169 (489)
Q Consensus       109 ~~GsG~ii~~~G~ilTn~hvv~~a~~i~V~~~d-------g~--~~~a-~vvg---~D~--~~DlAvlki~~~~----~~  169 (489)
T Consensus        25 ~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~DiAll~L~~~v~~~~~v  103 (218)
T pfam00089        25 HFCGGSLISEN-WVLTAAHCVSNAKSVRVVLGAHNIVLREGGEQKFDVEKIIVHPNYNPDTLNDIALLKLKSPVTLGDTV  103 (218)
T ss_pred             EEEEEEEEECC-EEEECHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCEECCCCE
T ss_conf             89899997199-99979455689987389992033455799838999999998887678876545723034624835745


Q ss_pred             CCCCCCCC-CCCCCCCEEEEECCCC----CCCC---CCCCCCCCCCC--CCCCC-CCCCEEEEEE---EEECCCCCCEEE
Q ss_conf             65565567-3111241467523665----5311---11258744311--22334-4342023323---320134770354
Q gi|254780700|r  170 IPVEFEDA-NNIRVGEAVFTIGNPF----RLRG---TVSAGIVSALD--RDIPD-RPGTFTQIDA---PINQGNSGGPCF  235 (489)
Q Consensus       170 ~~~~lg~s-~~~~~G~~v~aiG~P~----g~~~---tvt~GiiSa~~--R~~~~-~~~~~iqtDa---~InpGnSGGpl~  235 (489)
T Consensus       104 ~pi~l~~~~~~~~~g~~~~~~Gwg~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~c~GDsGgPl~  183 (218)
T pfam00089       104 RPICLPTASSDLPVGTTCTVSGWGNTKTLGLPDTLQEVTVPVVSRETCRSAYGGTVTDTMICAGAGGKDACQGDSGGPLV  183 (218)
T ss_pred             EEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEE
T ss_conf             67774766566569989999970766889944066676777708999864247976866587357998788884488149


Q ss_pred             ECCCEEEEEECCC
Q ss_conf             0343035551234
Q gi|254780700|r  236 NALGHVIGVNAMI  248 (489)
Q Consensus       236 n~~G~viGint~i  248 (489)
T Consensus       184 ~~~~~lvGi~S~g  196 (218)
T pfam00089       184 CSDGELIGIVSWG  196 (218)
T ss_pred             ECCCEEEEEEEEC
T ss_conf             2499899999858