HHsearch alignment for GI: 254780700 and conserved domain: pfam00089
>pfam00089 Trypsin Trypsin.
Probab=99.21 E-value=8.1e-11 Score=87.58 Aligned_cols=139 Identities=27% Similarity=0.381 Sum_probs=83.9
Q ss_pred CCEEEEEECCCCEEEECHHCCCCCCEEEEECCC-------CE--EEEE-CCCC---CCC--CCCEEEEEEECCC----CC
Q ss_conf 340278975996298510104787143796289-------80--6740-1112---334--4432899960676----67
Q gi|254780700|r 109 MFGSGFFITDDGYILTSNHIVEDGASFSVILSD-------DT--ELPA-KLVG---TDA--LFDLAVLKVQSDR----KF 169 (489)
Q Consensus 109 ~~GsG~ii~~~G~ilTn~hvv~~a~~i~V~~~d-------g~--~~~a-~vvg---~D~--~~DlAvlki~~~~----~~ 169 (489)
T Consensus 25 ~~C~GtLIs~~-~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~DiAll~L~~~v~~~~~v 103 (218)
T pfam00089 25 HFCGGSLISEN-WVLTAAHCVSNAKSVRVVLGAHNIVLREGGEQKFDVEKIIVHPNYNPDTLNDIALLKLKSPVTLGDTV 103 (218)
T ss_pred EEEEEEEEECC-EEEECHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCEECCCCE
T ss_conf 89899997199-99979455689987389992033455799838999999998887678876545723034624835745
Q ss_pred CCCCCCCC-CCCCCCCEEEEECCCC----CCCC---CCCCCCCCCCC--CCCCC-CCCCEEEEEE---EEECCCCCCEEE
Q ss_conf 65565567-3111241467523665----5311---11258744311--22334-4342023323---320134770354
Q gi|254780700|r 170 IPVEFEDA-NNIRVGEAVFTIGNPF----RLRG---TVSAGIVSALD--RDIPD-RPGTFTQIDA---PINQGNSGGPCF 235 (489)
Q Consensus 170 ~~~~lg~s-~~~~~G~~v~aiG~P~----g~~~---tvt~GiiSa~~--R~~~~-~~~~~iqtDa---~InpGnSGGpl~ 235 (489)
T Consensus 104 ~pi~l~~~~~~~~~g~~~~~~Gwg~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~Ca~~~~~~~c~GDsGgPl~ 183 (218)
T pfam00089 104 RPICLPTASSDLPVGTTCTVSGWGNTKTLGLPDTLQEVTVPVVSRETCRSAYGGTVTDTMICAGAGGKDACQGDSGGPLV 183 (218)
T ss_pred EEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEE
T ss_conf 67774766566569989999970766889944066676777708999864247976866587357998788884488149
Q ss_pred ECCCEEEEEECCC
Q ss_conf 0343035551234
Q gi|254780700|r 236 NALGHVIGVNAMI 248 (489)
Q Consensus 236 n~~G~viGint~i 248 (489)
T Consensus 184 ~~~~~lvGi~S~g 196 (218)
T pfam00089 184 CSDGELIGIVSWG 196 (218)
T ss_pred ECCCEEEEEEEEC
T ss_conf 2499899999858