HHsearch alignment for GI: 254780700 and conserved domain: pfam02122
>pfam02122 Peptidase_S39 Peptidase S39. This family contains polyprotein processing endopeptidases from RNA viruses.
Probab=92.81 E-value=0.41 Score=25.74 Aligned_cols=116 Identities=26% Similarity=0.397 Sum_probs=71.5
Q ss_pred EEEECHHCCCCCCEEEEECCCCEEEE---ECCCCCCCCCCEEEEEEEC----CCCCCCCCCCCCCCCCCCCEEE-EECCC
Q ss_conf 29851010478714379628980674---0111233444328999606----7667655655673111241467-52366
Q gi|254780700|r 121 YILTSNHIVEDGASFSVILSDDTELP---AKLVGTDALFDLAVLKVQS----DRKFIPVEFEDANNIRVGEAVF-TIGNP 192 (489)
Q Consensus 121 ~ilTn~hvv~~a~~i~V~~~dg~~~~---a~vvg~D~~~DlAvlki~~----~~~~~~~~lg~s~~~~~G~~v~-aiG~P 192 (489)
T Consensus 43 ~lvt~~h~~~~~~~~~s~-~tg~kipl~eF~~l~~~~~~D~~il~gppnWes~lgck~~~~~t~~~l~~g~a~~~~~~~- 120 (203)
T pfam02122 43 ALVTAEHVLSDPSLVLSL-RTGEKIPLAEFKVLLESNLADILILVGPPNWESILGCKAVHFTTADQLAKGPASFYTLRK- 120 (203)
T ss_pred EEEEEEEECCCCCEEEEE-CCCCEEEHHHCEEEEECCCCCEEEEECCCCCHHHCCCCCCCEEEHHHHCCCCEEEEEECC-
T ss_conf 478878862445168970-258610257745552226765788716996032114242130757886068626999739-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCEEEEEECCC
Q ss_conf 55311112587443112233443420233233201347703540343035551234
Q gi|254780700|r 193 FRLRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGGPCFNALGHVIGVNAMI 248 (489)
Q Consensus 193 ~g~~~tvt~GiiSa~~R~~~~~~~~~iqtDa~InpGnSGGpl~n~~G~viGint~i 248 (489)
T Consensus 121 -~-~W~~~----~A---ki~g~~~~~~~VlSnT~~G~SG~pyf~gk-~~vGvH~G~ 166 (203)
T pfam02122 121 -D-EWPSS----SA---KIPGSEGKFASVLSNTSPGHSGTPYFSGK-NVVGVHKGS 166 (203)
T ss_pred -C-EEEEC----CC---EEECCCCCEEEEECCCCCCCCCCCCCCCC-EEEEEEECC
T ss_conf -8-48841----33---88056785688873899988888411583-689997066