HHsearch alignment for GI: 254780700 and conserved domain: pfam11874

>pfam11874 DUF3394 Domain of unknown function (DUF3394). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with pfam06808.

Probab=92.59  E-value=0.27  Score=26.82  Aligned_cols=82  Identities=20%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             CEEEEECCCCCCCCEEEEECCC---CCEEEECC--CCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCEEEEEEEEEC
Q ss_conf             1012220356675201012047---81665125--565587631000012465452546987289657152007999606
Q gi|254780700|r  343 DFVWQIASRSPKEQVKISLCKE---GSKHSVAV--VLGSSPTAKNDMHLEVGDKELLGMVLQDINDGNKKLVRIVALNPN  417 (489)
Q Consensus       343 ~l~~~i~~~~~G~~v~l~v~R~---g~~~~~~V--~l~~~p~~~~~~~~~~~~~~~lGl~v~~l~~~~~~~~gi~vv~v~  417 (489)
T Consensus        64 ~~~~~~~~~~~~~~lri~v~g~~~~G~~~~~~~~~~i~~~~~-------~~~rl~~~Gl~l~~e------~~~~~vd~~~  130 (183)
T pfam11874        64 ELVQAAEALPAGEELRLRVEGEDLEGDPVEKTVLLPLGEGAD-------GEERLEDAGLTLREE------GGKVIVDEVE  130 (183)
T ss_pred             HHHHHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCC-------HHHHHHHHCCEEEEC------CCCEEEEECC
T ss_conf             999999718999869999982178897378999999678984-------664399809779805------9928999548


Q ss_pred             CCCHHHHCCCCCCCEEEEEC
Q ss_conf             88978982999888999889
Q gi|254780700|r  418 REREVEAKGIQKGMTIVSVN  437 (489)
Q Consensus       418 ~~s~Aa~~GL~~GDiIl~VN  437 (489)
T Consensus       131 f~s~Aek~G~d~d~~I~~v~  150 (183)
T pfam11874       131 FGSPAEKAGIDFDWEIVEVE  150 (183)
T ss_pred             CCCHHHHHCCCCCCEEEEEE
T ss_conf             89868882687786899998