HHsearch alignment for GI: 254780700 and conserved domain: smart00020
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=98.31 E-value=8.2e-06 Score=55.67 Aligned_cols=136 Identities=22% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCEEEEEECCCCEEEECHHCCCCC--CEEEEECC------C--CEEEEEC-CCC------CCCCCCEEEEEEECCCC---
Q ss_conf 340278975996298510104787--14379628------9--8067401-112------33444328999606766---
Q gi|254780700|r 109 MFGSGFFITDDGYILTSNHIVEDG--ASFSVILS------D--DTELPAK-LVG------TDALFDLAVLKVQSDRK--- 168 (489)
Q Consensus 109 ~~GsG~ii~~~G~ilTn~hvv~~a--~~i~V~~~------d--g~~~~a~-vvg------~D~~~DlAvlki~~~~~--- 168 (489)
T Consensus 26 ~~CgGsLIs~~-~VLTAAhCv~~~~~~~~~V~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~ 104 (229)
T smart00020 26 HFCGGSLISPR-WVLTAAHCVYGSDPSNIRVRLGSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKSPVTLSD 104 (229)
T ss_pred EEEEEEEEECC-EEEECCEECCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 89899997399-99969461368888757999744374579985899999999898998988757589994587618025
Q ss_pred -CCCCCCCC-CCCCCCCCEEEEECCCCCCCC-----------CCCCCCCCCCC--CCCCC---CCCCEEEE-----EEEE
Q ss_conf -76556556-731112414675236655311-----------11258744311--22334---43420233-----2332
Q gi|254780700|r 169 -FIPVEFED-ANNIRVGEAVFTIGNPFRLRG-----------TVSAGIVSALD--RDIPD---RPGTFTQI-----DAPI 225 (489)
Q Consensus 169 -~~~~~lg~-s~~~~~G~~v~aiG~P~g~~~-----------tvt~GiiSa~~--R~~~~---~~~~~iqt-----Da~I 225 (489)
T Consensus 105 ~v~picLp~~~~~~~~~~~~~v~Gw--G~~~~~~~~~~~~L~~~~~~v~~~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~ 182 (229)
T smart00020 105 NVRPICLPSSNYNVPAGTTCTVSGW--GRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKDA 182 (229)
T ss_pred CEEEEECCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 2677655886665569987998411--53028888888643799998848899877626888657664822568999654
Q ss_pred ECCCCCCEEEECC--CEEEEEECC
Q ss_conf 0134770354034--303555123
Q gi|254780700|r 226 NQGNSGGPCFNAL--GHVIGVNAM 247 (489)
Q Consensus 226 npGnSGGpl~n~~--G~viGint~ 247 (489)
T Consensus 183 C~GDsGgPL~~~~~~~~l~Gi~S~ 206 (229)
T smart00020 183 CQGDSGGPLVCNDGRWVLVGIVSW 206 (229)
T ss_pred CCCCCCCCEEEECCCEEEEEEEEE
T ss_conf 356668705998992999999988