HHsearch alignment for GI: 254780700 and conserved domain: smart00228

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

Probab=98.73  E-value=9.8e-10  Score=80.69  Aligned_cols=59  Identities=29%  Similarity=0.445  Sum_probs=31.6

Q ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCC
Q ss_conf             41132011111211346711678887524314787431012220356675201012047
Q gi|254780700|r  306 KGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKE  364 (489)
Q Consensus       306 ~GvlV~~V~~~sPA~~AGLk~GDvI~~ing~~I~~~~~l~~~i~~~~~G~~v~l~v~R~  364 (489)
T Consensus        26 ~gv~I~~v~~~s~A~~~Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   84 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG   84 (85)
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             98999998799947876898999999999999899989999999877999799999949