HHsearch alignment for GI: 254780700 and conserved domain: smart00228

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.39  E-value=2.6e-06  Score=58.83  Aligned_cols=74  Identities=19%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             CCCCEEEEECCHHHCCEEEEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf             5254698728965715200799960688978982999888999889999389999999999886259956999997177
Q gi|254780700|r  392 ELLGMVLQDINDGNKKLVRIVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDP  470 (489)
Q Consensus       392 ~~lGl~v~~l~~~~~~~~gi~vv~v~~~s~Aa~~GL~~GDiIl~VNg~~V~s~~dl~~iL~~~k~~~~~~VLL~V~r~~  470 (489)
T Consensus        12 ~~~G~~~~~~~~~---~~gv~I~~v~~~s~A~~~Gl~~GD~I~~vng~~v~~~~~-~~~~~~~~~~-~~~v~l~v~r~~   85 (85)
T smart00228       12 GGLGFSLVGGKDE---GGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTH-LEAVDLLKKA-GGKVTLTVLRGG   85 (85)
T ss_pred             CCCCEEEEECCCC---CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCH-HHHHHHHHCC-CCEEEEEEEECC
T ss_conf             9668899841578---998999998799947876898999999999999899989-9999998779-997999999496