PSIBLAST alignment of GI: 254780700 and protein with PDB id: 1l1j
>gi|29726369|pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp- Independent Heat Shock Protease Htra Length = 239
>gi|29726370|pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp- Independent Heat Shock Protease Htra Length = 239
Score = 91.0 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 25/216 (11%)
Query: 43 VIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEPILS 102
V+ +P++V + V K YF + F K+F P
Sbjct: 9 VVEACAPAVVKIDVVKTVKT-----------------SFFDPYFEQFFKKWFGELPPGFE 51
Query: 103 DTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLK 162
+ GSGF +GYILT+ H+V + +V + D ++ A+ +G D D+AV+K
Sbjct: 52 --RQVASLGSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIK 109
Query: 163 VQ-SDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAG-----IVSALDRDIPDRPG 216
++ SD+KF +EF D++ +++GE IGNP + TV+ G D
Sbjct: 110 IKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYV 169
Query: 217 TFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVTSG 252
Q DA IN GNSGGP N G VIG+N IV
Sbjct: 170 GLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQ 205