PSIBLAST alignment of GI: 254780700 and protein with PDB id: 1l1j

>gi|29726369|pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp- Independent Heat Shock Protease Htra Length = 239
>gi|29726370|pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp- Independent Heat Shock Protease Htra Length = 239
 Score = 91.0 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 25/216 (11%)

Query: 43  VIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEPILS 102
           V+   +P++V + V    K                       YF + F K+F    P   
Sbjct: 9   VVEACAPAVVKIDVVKTVKT-----------------SFFDPYFEQFFKKWFGELPPGFE 51

Query: 103 DTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLK 162
              +    GSGF    +GYILT+ H+V    + +V + D ++  A+ +G D   D+AV+K
Sbjct: 52  --RQVASLGSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIK 109

Query: 163 VQ-SDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAG-----IVSALDRDIPDRPG 216
           ++ SD+KF  +EF D++ +++GE    IGNP   + TV+ G            D      
Sbjct: 110 IKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYV 169

Query: 217 TFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVTSG 252
              Q DA IN GNSGGP  N  G VIG+N  IV   
Sbjct: 170 GLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQ 205