RPSBLAST alignment for GI: 254780700 and conserved domain: cd00989
>gnl|CDD|29046 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.. Length = 79
Score = 47.9 bits (114), Expect = 6e-06
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 303 RGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLC 362
+I VV SPA KAG+K GD I ++G+ IKS +D V + +P + + +++
Sbjct: 9 GPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLVDAVQ-ENPGKPLTLTVE 67
Query: 363 KEGSKHSVAVV 373
+ G ++ +
Sbjct: 68 RNGETITLTLT 78