RPSBLAST alignment for GI: 254780700 and conserved domain: cd00990
>gnl|CDD|29047 cd00990, PDZ_glycyl_aminopeptidase, PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.. Length = 80
Score = 38.4 bits (89), Expect = 0.004
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 310 ITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHS 369
+T V +SPADKAG+ GD + ++G + + QD ++ + V++++ ++
Sbjct: 16 VTFVRDDSPADKAGLVAGDELVAVNGWRVDALQD---RLKEYQAGDPVELTVFRDDRLIE 72
Query: 370 VAVVLGS 376
V + L
Sbjct: 73 VPLTLAD 79