RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780700|ref|YP_003065113.1| serine protease DO-like
protease [Candidatus Liberibacter asiaticus str. psy62]
(489 letters)
>gnl|CDD|162670 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
family. This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is
dominant at low temperatures, whereas the proteolytic
activity is turned on at elevated temperatures.
Length = 428
Score = 311 bits (800), Expect = 2e-85
Identities = 144/437 (32%), Positives = 225/437 (51%), Gaps = 30/437 (6%)
Query: 39 DLPPVIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEE 98
P++ +V+P++V++ VE K + +F D F +
Sbjct: 2 SFAPLVEKVAPAVVNISVEGTVKRRNRPPAL---------PPFFRQFFGDDMPNFPRQQ- 51
Query: 99 PILSDTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDL 158
+ R + GSG I+ DGYILT+NH+V+ +V LSD E AKLVG D D+
Sbjct: 52 ---RERKVRGL-GSGVIISADGYILTNNHVVDGADEITVTLSDGREFKAKLVGKDPRTDI 107
Query: 159 AVLKVQSDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIP--DRPG 216
AVLK+ + + ++ D++ +RVG+ V IGNPF L TV++GIVSAL R
Sbjct: 108 AVLKIDAKKNLPVIKLGDSDKLRVGDWVLAIGNPFGLGQTVTSGIVSALGRSGLGIGDYE 167
Query: 217 TFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVTSGQFHMGVGLIIPLSIIKKAIPSLIS 276
F Q DA IN GNSGGP N G VIG+N I + ++G+G IP ++ K + LI
Sbjct: 168 NFIQTDAAINPGNSGGPLVNLRGEVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIE 227
Query: 277 KGRVDHGWFGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGR 336
G+V GW G+ Q +T +LA LGL +G+L+ V+ SPA+KAG+K GDVI ++G+
Sbjct: 228 GGKVQRGWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGK 287
Query: 337 IIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVVLGSSPTAKNDMHLEVGDKELLGM 396
I S D I + P ++V + + ++G + ++ V LG+SP + LG+
Sbjct: 288 PISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQAS-----SSNPFLGL 342
Query: 397 VLQDINDGNKKLVR-------IVALNPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVER 449
+ +++ +K +R +V G+Q G I+SVN VS + ++ +
Sbjct: 343 TVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRK 402
Query: 450 LIGKAKEKKRDSVLLQI 466
++ +AK+ V L I
Sbjct: 403 VLDRAKKG--GRVALLI 417
>gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional.
Length = 455
Score = 192 bits (488), Expect = 2e-49
Identities = 142/485 (29%), Positives = 231/485 (47%), Gaps = 46/485 (9%)
Query: 3 KRQILSVKSICTVALTCVIFSSTYLVLEAKLP--PSSVDLPPVIARVSPSIVSVMVEPKK 60
+ Q+LS ++ +V LT + ++ L P++ +V P++VSV VE
Sbjct: 4 QTQLLSALAL-SVGLTLSASFQAVASIPGQVAGQAPLPSLAPMLEKVLPAVVSVRVEGTA 62
Query: 61 KVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEP-ILSDTVERLMFGSGFFI-TD 118
+PE+ F KFF + P + E L GSG I
Sbjct: 63 SQGQ----------KIPEE----------FKKFFGDDLPDQPAQPFEGL--GSGVIIDAA 100
Query: 119 DGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFIPVEFEDAN 178
GY+LT+NH++ S+ L+D E AKL+G+D D+A+L++Q+ K + D++
Sbjct: 101 KGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD 160
Query: 179 NIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPG--TFTQIDAPINQGNSGGPCFN 236
+RVG+ +GNPF L T ++GI+SAL R + G F Q DA IN+GNSGG N
Sbjct: 161 KLRVGDFAVAVGNPFGLGQTATSGIISALGRSGLNLEGLENFIQTDASINRGNSGGALLN 220
Query: 237 ALGHVIGVNAMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWFGIMTQNLTQEL 296
G +IG+N I+ G +G+G IP ++ + LI G + G GI ++ ++
Sbjct: 221 LNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADI 280
Query: 297 AIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQ 356
A L +G+ ++ V+ S + KAG+K GD+I L+G+ + S + +IA+ P +
Sbjct: 281 AKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTK 340
Query: 357 VKISLCKEGSKHSVAVVLGSSPTAKNDMHLEVGDKELLGMVLQD--INDGNKKLVRIVAL 414
VK+ L + G V V L +S ++ E+ L G L D + DG K I
Sbjct: 341 VKLGLLRNGKPLEVEVTLDTSTSSSASA--EMITPALQGATLSDGQLKDGTKG---IKID 395
Query: 415 NPNREREVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQS 474
+ G+QK I+ VN V+ I ++ +++ K + LQI
Sbjct: 396 EVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVL----AAKPAIIALQI------VR 445
Query: 475 GNDNM 479
GN+++
Sbjct: 446 GNESI 450
>gnl|CDD|182855 PRK10942, PRK10942, serine endoprotease; Provisional.
Length = 473
Score = 181 bits (461), Expect = 4e-46
Identities = 129/431 (29%), Positives = 214/431 (49%), Gaps = 39/431 (9%)
Query: 40 LPPVIARVSPSIVSVMVEPKKKVSVEQM---FNAYGFGNLP---EDHPLKNYFRKDFHKF 93
L P++ +V PS+VS+ VE V+ +M F + N P E P ++ F
Sbjct: 40 LAPMLEKVMPSVVSINVEGSTTVNTPRMPRQFQQFFGDNSPFCQEGSPFQS------SPF 93
Query: 94 FSGEEPILSDTVER--LMFGSGFFI-TDDGYILTSNHIVEDGASFSVILSDDTELPAKLV 150
G + ++ + GSG I D GY++T+NH+V++ V LSD + AK+V
Sbjct: 94 CQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATKIKVQLSDGRKFDAKVV 153
Query: 151 GTDALFDLAVLKVQSDRKFIPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDR- 209
G D D+A++++Q+ + ++ D++ +RVG+ IGNP+ L TV++GIVSAL R
Sbjct: 154 GKDPRSDIALIQLQNPKNLTAIKMADSDALRVGDYTVAIGNPYGLGETVTSGIVSALGRS 213
Query: 210 --DIPDRPGTFTQIDAPINQGNSGGPCFNALGHVIGVNAMIVTSGQFHMGVGLIIPLSII 267
++ + F Q DA IN+GNSGG N G +IG+N I+ ++G+G IP +++
Sbjct: 214 GLNVENYE-NFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMV 272
Query: 268 KKAIPSLISKGRVDHGWFGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVG 327
K ++ G+V G GIM L ELA + + +G+ ++ V+ S A KAG+K G
Sbjct: 273 KNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAG 332
Query: 328 DVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVVLGSSPTAKNDMHLE 387
DVI L+G+ I S Q+ + ++ + L ++G +V V L S + D
Sbjct: 333 DVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVD---- 388
Query: 388 VGDKELLGMVLQDI------NDGNKKLVRIVALNPNREREVEAK-GIQKGMTIVSVNTHE 440
+ I N G K V + + P A+ G++KG I+ N
Sbjct: 389 ------SSNIFNGIEGAELSNKGGDKGVVVDNVKPG---TPAAQIGLKKGDVIIGANQQP 439
Query: 441 VSCIKDVERLI 451
V I ++ +++
Sbjct: 440 VKNIAELRKIL 450
>gnl|CDD|162671 TIGR02038, protease_degS, periplasmic serine pepetdase DegS. This
family consists of the periplasmic serine protease DegS
(HhoB), a shorter paralog of protease DO (HtrA, DegP)
and DegQ (HhoA). It is found in E. coli and several
other Proteobacteria of the gamma subdivision. It
contains a trypsin domain and a single copy of PDZ
domain (in contrast to DegP with two copies). A critical
role of this DegS is to sense stress in the periplasm
and partially degrade an inhibitor of sigma(E).
Length = 351
Score = 160 bits (407), Expect = 6e-40
Identities = 93/273 (34%), Positives = 146/273 (53%), Gaps = 7/273 (2%)
Query: 111 GSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDR-KF 169
GSG ++ +GYILT+ H+++ V L D + A+LVG+D L DLAVLK++ D
Sbjct: 80 GSGVIMSKEGYILTNYHVIKKADQIVVALQDGRKFEAELVGSDPLTDLAVLKIEGDNLPT 139
Query: 170 IPVEFEDANNIRVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPG--TFTQIDAPINQ 227
IPV VG+ V IGNP+ L T++ GI+SA R+ G F Q DA IN
Sbjct: 140 IPVNL--DRPPHVGDVVLAIGNPYNLGQTITQGIISATGRNGLSSVGRQNFIQTDAAINA 197
Query: 228 GNSGGPCFNALGHVIGVN--AMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWF 285
GNSGG N G ++G+N + + G+ IP+ + K + +I GRV G+
Sbjct: 198 GNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGRVIRGYI 257
Query: 286 GIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFV 345
G+ +++ +A LGL +G +IT V PA +AG+ V DVI DG+ + ++ +
Sbjct: 258 GVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELM 317
Query: 346 WQIASRSPKEQVKISLCKEGSKHSVAVVLGSSP 378
+IA P +V +++ ++G + + V + P
Sbjct: 318 DRIAETRPGSKVMVTVLRQGKQLELPVTIDEKP 350
>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional.
Length = 353
Score = 152 bits (387), Expect = 1e-37
Identities = 89/275 (32%), Positives = 141/275 (51%), Gaps = 8/275 (2%)
Query: 111 GSGFFITDDGYILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFI 170
GSG + GYILT+ H++ D V L D A LVG+D+L DLAVLK+ + +
Sbjct: 80 GSGVIMDQRGYILTNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATN--L 137
Query: 171 PVEFEDANNI-RVGEAVFTIGNPFRLRGTVSAGIVSALDRD--IPDRPGTFTQIDAPINQ 227
PV + + +G+ V IGNP+ L T++ GI+SA R P F Q DA IN
Sbjct: 138 PVIPINPKRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLSPTGRQNFLQTDASINH 197
Query: 228 GNSGGPCFNALGHVIGVNAMIV---TSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGW 284
GNSGG N+LG ++G+N + G+ G+G IP + K + LI GRV G+
Sbjct: 198 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGRVIRGY 257
Query: 285 FGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDF 344
GI + + A G+ +G ++ V + PA KAG++V D+I ++ + S +
Sbjct: 258 IGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALET 317
Query: 345 VWQIASRSPKEQVKISLCKEGSKHSVAVVLGSSPT 379
+ Q+A P + + + ++ + ++ V + P
Sbjct: 318 MDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYPA 352
>gnl|CDD|128524 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2. Also
called DHR (Dlg homologous region) or GLGF (relatively
well conserved tetrapeptide in these domains). Some PDZs
have been shown to bind C-terminal polypeptides; others
appear to bind internal (non-C-terminal) polypeptides.
Different PDZs possess different binding specificities.
Length = 85
Score = 46.2 bits (110), Expect = 2e-05
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 281 DHGWFGIMTQNLTQELAIPLGLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKS 340
G G E G ++++VV SPA KAG+KVGDVI ++G ++
Sbjct: 10 GGGGLGFSLVGGKDEG---------GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEG 60
Query: 341 HQDFVWQIASRSPKEQVKISLCKEG 365
+ +V +++ + G
Sbjct: 61 LTHLEAVDLLKKAGGKVTLTVLRGG 85
>gnl|CDD|161683 TIGR00054, TIGR00054, RIP metalloprotease RseP. A model that
detects fragments as well matches a number of members of
the PEPTIDASE FAMILY S2C. The region of match appears
not to overlap the active site domain.
Length = 420
Score = 40.2 bits (94), Expect = 0.001
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 290 QNLTQELAIPLGLRGTKGSLITA-VVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQI 348
+N T E+ L RG K + + V SPA+KAG+K GD I ++G ++S DFV +
Sbjct: 186 ENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTDFVSAV 245
Query: 349 ASRSPKEQVKISLCKEGSKHSVAVVLGSSPTAKN 382
+P + + I + + G S+++ P AK
Sbjct: 246 -KENPGKSMDIKVERNGETLSISLT----PEAKG 274
>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional.
Length = 449
Score = 39.3 bits (92), Expect = 0.003
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 294 QELAIPLGLRGTKGSLITAVVKE----SPADKAGMKVGDVICMLDGRIIKSHQDFVWQIA 349
Q+ LG+R +G I V+ E S A KAG++ GD I +DG+ + Q FV +
Sbjct: 206 QDPVSSLGIR-PRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQTFVTLV- 263
Query: 350 SRSPKEQVKISLCKEGSKHSVAVVLGSSPTAK 381
+P + + + + ++GS + L +P +K
Sbjct: 264 RDNPGKPLALEIERQGS----PLSLTLTPDSK 291
>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD. This
model describes the bacterial and chloroplast form of
MinD, a multifunctional cell division protein that
guides correct placement of the septum. The homologous
archaeal MinD proteins, with many archaeal genomes
having two or more forms, are described by a separate
model.
Length = 261
Score = 33.1 bits (76), Expect = 0.16
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 426 GIQKG---------MTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQI-KYDPDMQSG 475
GI+ G IV V T EVS ++D +R+IG + K + + L + + P+M
Sbjct: 122 GIESGFRNAVAPADEAIV-VTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPEMVKK 180
Query: 476 NDNMS 480
D +S
Sbjct: 181 GDMLS 185
>gnl|CDD|163044 TIGR02860, spore_IV_B, stage IV sporulation protein B. SpoIVB, the
stage IV sporulation protein B of endospore-forming
bacteria such as Bacillus subtilis, is a serine
proteinase, expressed in the spore (rather than mother
cell) compartment, that participates in a proteolytic
activation cascade for Sigma-K. It appears to be
universal among endospore-forming bacteria and occurs
nowhere else.
Length = 402
Score = 32.7 bits (75), Expect = 0.23
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 315 KESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSK 367
SP ++AG+++GD I ++G IK+ D + +++ E++ +++ + G
Sbjct: 122 IHSPGEEAGIQIGDRILKINGEKIKNMDDLA-NLINKAGGEKLTLTIERGGKI 173
>gnl|CDD|161775 TIGR00225, prc, C-terminal peptidase (prc). A C-terminal peptidase
with different substrates in different species including
processing of D1 protein of the photosystem II reaction
center in higher plants and cleavage of a peptide of 11
residues from the precursor form of penicillin-binding
protein in E.coli E.coli and H influenza have the most
distal branch of the tree and their proteins have an
N-terminal 200 amino acids that show no homology to
other proteins in the database.
Length = 334
Score = 31.9 bits (73), Expect = 0.35
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 309 LITAVVKESPADKAGMKVGDVICMLDG 335
+I + + SPA+KAG+K GD I ++G
Sbjct: 65 VIVSPFEGSPAEKAGIKPGDKIIKING 91
>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease;
Provisional.
Length = 389
Score = 31.6 bits (72), Expect = 0.46
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 295 ELAIPLGLRGTKGSL-ITAVVKESPADKAGMKVGDVICMLDGR 336
E+ P G G L + A PA +AG++ GDVI +DG
Sbjct: 90 EVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGT 132
>gnl|CDD|169409 PRK08374, PRK08374, homoserine dehydrogenase; Provisional.
Length = 336
Score = 30.9 bits (70), Expect = 0.83
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 98 EPILSDTVERLMFGSGFFITDDGYILTSNHIVEDGASFSVILSDDTEL------PAK-LV 150
E +L DTV+R+ +ILT +E G +F L + L P+K +
Sbjct: 162 ENLLGDTVKRI---EAVVNATTTFILTR---MEQGKTFEEALKEAQTLGIAERDPSKDID 215
Query: 151 GTDALFDLAVLKVQSDRKFIPVEFEDAN-----NIRVGEA--VFTIGNPFRLRGTVSAGI 203
G DA + +L + F P+ FE+ ++ GE G RL TV G
Sbjct: 216 GIDAGYKATILHWVA---FPPITFEEVGIRGIKDVTEGEIERAKAKGRNVRLVATVEEGR 272
Query: 204 VSALDRDIPD 213
+S + +P+
Sbjct: 273 ISVKPKKLPE 282
>gnl|CDD|184804 PRK14720, PRK14720, transcript cleavage factor/unknown domain
fusion protein; Provisional.
Length = 906
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 432 TIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSGN 476
+V N+ + +ER + +E R LL+ Y+P +
Sbjct: 194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238
>gnl|CDD|179776 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 30.1 bits (69), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 160 VLKVQSDRKFIPVEFEDANNIRVGEAVFTIGNP 192
+++++ D+ I V +E+ + I+ GE V G P
Sbjct: 40 IIRIEGDKATIQV-YEETSGIKPGEPVEFTGEP 71
>gnl|CDD|151032 pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7
(DPP-7) is the best characterized member of this family.
It is a serine peptidase that is located on the cell
surface and is predicted to have two N-terminal
transmembrane domains.
Length = 696
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 228 GNSGGPCFNALGHVIGVN 245
GNSG P N G ++G+
Sbjct: 631 GNSGSPVLNGKGELVGLA 648
>gnl|CDD|182074 PRK09784, PRK09784, hypothetical protein; Provisional.
Length = 417
Score = 29.6 bits (66), Expect = 1.9
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 314 VKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCKEGSKHSVAVV 373
+K +P D GD C+L ++ D+ W + S +++V K K ++ +
Sbjct: 200 LKYAPVD------GDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKQTIEAL 253
Query: 374 LGSSPTAKNDMHLEVGDKELLGMVLQDIN 402
+ TA ++ +V K L G+ LQ N
Sbjct: 254 VD---TAFYNLREDV--KTLFGVDLQSDN 277
>gnl|CDD|149458 pfam08404, Baculo_p74_N, Baculoviridae P74 N-terminal. This domain
is found at the N-terminus of P74 occlusion-derived
virus (ODV) envelope proteins which are required for
oral infectivity. The envelope proteins are found in
baculoviruses which are insect pathogens. The C-terminus
of P74 is anchored to the membrane whereas the
N-terminus is exposed to the virion surface. Furthermore
P74 is unusual for a virus envelope protein as it lacks
an N-terminal localisation signal sequence. Also see
pfam04583.
Length = 301
Score = 28.8 bits (65), Expect = 3.2
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 100 ILSDTVERLMFGSGFFITDDGYILTSNHI---VEDGASFSVILSDDTELPAKLVGT 152
IL D+ ++ S Y+ T H+ V+D F+V D P + GT
Sbjct: 135 ILVDSFTKMYMNSP-------YLRTDEHLIRGVDDVPGFNVEPDTDPLFPERFKGT 183
>gnl|CDD|164900 PHA02107, PHA02107, hypothetical protein.
Length = 216
Score = 28.8 bits (64), Expect = 3.4
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 125 SNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFIPVEFEDANNI---- 180
SNH+V +FSV L + + P K V T V + P + D NI
Sbjct: 117 SNHVV----TFSVDLPNGDKAPVKNVETKT------EVVSTVDYTEPAKEPDGQNIFFAP 166
Query: 181 RVGEAVFTI 189
+AV +
Sbjct: 167 ETMKAVQLV 175
>gnl|CDD|165191 PHA02854, PHA02854, putative host range protein; Provisional.
Length = 178
Score = 28.3 bits (63), Expect = 5.0
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 20 VIFSSTYLVLEAKLPPSSVDLPPVIARVSPSIVSVMVEPKKKVSVEQMFNAYGFGNLPED 79
V++S+++ + D P + P V++ V PKKK V N Y F P D
Sbjct: 83 VVYSASFSINSDSYVKVFSDNPDKYKHMYP-TVTINV-PKKKFKVVDQGNTYMFIQSPID 140
Query: 80 HPLKNYFRKDFHKFFSGEE 98
K F KD +++ +
Sbjct: 141 DCDKEQFLKDEFEYYDSDN 159
>gnl|CDD|180936 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 28.3 bits (64), Expect = 5.1
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 195 LRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGG 232
LRG V AG ++ L DI DRPG ++ A I G +G
Sbjct: 317 LRGLVRAGRLARLRVDIRDRPGALARVTALI--GEAGA 352
>gnl|CDD|130430 TIGR01363, strep_his_triad, streptococcal histidine triad protein.
This model represents the N-terminal half of a family of
Streptococcal proteins that contain a signal peptide and
then up to five repeats of a region that includes a
His-X-X-His-X-His (histidine triad) motif. Three repeats
are found in the seed alignment. Members of this family
from Streptococcus pneumoniae are suggested to cleave
human C3, and the member PhpA has been shown in vaccine
studies to be a protective antigen in mice.
Length = 348
Score = 28.0 bits (62), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 113 GFFITDDGYILTSNHIVED 131
G + TDDGYI ++ I+ED
Sbjct: 181 GRYTTDDGYIFNASDIIED 199
>gnl|CDD|180494 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 27.6 bits (62), Expect = 7.0
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 191 NPFRLRG--TVSAGIVSALDRDIPDR 214
NPFRL G T+ I L ++PDR
Sbjct: 195 NPFRLEGQKTIGFEIADQLGWEVPDR 220
>gnl|CDD|151593 pfam11150, DUF2927, Protein of unknown function (DUF2927). This
family is conserved in Proteobacteria. Several members
are described as being putative lipoproteins, but
otherwise the function is not known.
Length = 212
Score = 27.6 bits (62), Expect = 8.4
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 460 DSVLLQIKYDPDMQSGNDNMSR 481
D +LL+ YDP ++ G M+R
Sbjct: 184 DELLLRALYDPRLRPG---MTR 202
>gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 27.2 bits (61), Expect = 8.9
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 294 QELAIPLGLRGT----KGSLITA 312
+ LA LG++GT KG LI A
Sbjct: 32 RALAKQLGIKGTSGMRKGELIAA 54
>gnl|CDD|183712 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 27.1 bits (61), Expect = 9.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 15/45 (33%)
Query: 27 LVLEAKLPPSSVDLP-PVIARVSPSIVSVMVEPKKKVSVEQMFNA 70
++LE S++ P PVI S+ VEPK K ++M A
Sbjct: 394 IILE------SMEFPEPVI--------SLAVEPKTKADQDKMGLA 424
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,921,859
Number of extensions: 526620
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 38
Length of query: 489
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 392
Effective length of database: 3,898,497
Effective search space: 1528210824
Effective search space used: 1528210824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)