BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780700|ref|YP_003065113.1| serine protease DO-like
protease [Candidatus Liberibacter asiaticus str. psy62]
         (489 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780700|ref|YP_003065113.1| serine protease DO-like protease [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 489

 Score =  996 bits (2574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%)

Query: 1   MFKRQILSVKSICTVALTCVIFSSTYLVLEAKLPPSSVDLPPVIARVSPSIVSVMVEPKK 60
           MFKRQILSVKSICTVALTCVIFSSTYLVLEAKLPPSSVDLPPVIARVSPSIVSVMVEPKK
Sbjct: 1   MFKRQILSVKSICTVALTCVIFSSTYLVLEAKLPPSSVDLPPVIARVSPSIVSVMVEPKK 60

Query: 61  KVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEPILSDTVERLMFGSGFFITDDG 120
           KVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEPILSDTVERLMFGSGFFITDDG
Sbjct: 61  KVSVEQMFNAYGFGNLPEDHPLKNYFRKDFHKFFSGEEPILSDTVERLMFGSGFFITDDG 120

Query: 121 YILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFIPVEFEDANNI 180
           YILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFIPVEFEDANNI
Sbjct: 121 YILTSNHIVEDGASFSVILSDDTELPAKLVGTDALFDLAVLKVQSDRKFIPVEFEDANNI 180

Query: 181 RVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGGPCFNALGH 240
           RVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGGPCFNALGH
Sbjct: 181 RVGEAVFTIGNPFRLRGTVSAGIVSALDRDIPDRPGTFTQIDAPINQGNSGGPCFNALGH 240

Query: 241 VIGVNAMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWFGIMTQNLTQELAIPL 300
           VIGVNAMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWFGIMTQNLTQELAIPL
Sbjct: 241 VIGVNAMIVTSGQFHMGVGLIIPLSIIKKAIPSLISKGRVDHGWFGIMTQNLTQELAIPL 300

Query: 301 GLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKIS 360
           GLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKIS
Sbjct: 301 GLRGTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKIS 360

Query: 361 LCKEGSKHSVAVVLGSSPTAKNDMHLEVGDKELLGMVLQDINDGNKKLVRIVALNPNRER 420
           LCKEGSKHSVAVVLGSSPTAKNDMHLEVGDKELLGMVLQDINDGNKKLVRIVALNPNRER
Sbjct: 361 LCKEGSKHSVAVVLGSSPTAKNDMHLEVGDKELLGMVLQDINDGNKKLVRIVALNPNRER 420

Query: 421 EVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSGNDNMS 480
           EVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSGNDNMS
Sbjct: 421 EVEAKGIQKGMTIVSVNTHEVSCIKDVERLIGKAKEKKRDSVLLQIKYDPDMQSGNDNMS 480

Query: 481 RFVSLKIDK 489
           RFVSLKIDK
Sbjct: 481 RFVSLKIDK 489


>gi|254780773|ref|YP_003065186.1| zinc metallopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 349

 Score = 30.4 bits (67), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 304 GTKGSLITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDFVWQIASRSPKEQVKISLCK 363
           G    +++ V   SPA  AG+K GD I  LDG  + + ++ V      +P  ++ + L +
Sbjct: 116 GVMKPVVSNVSPASPAAIAGVKKGDCIISLDGITVSAFEE-VAPYVRENPLHEISLVLYR 174

Query: 364 E 364
           E
Sbjct: 175 E 175


>gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 298

 Score = 26.6 bits (57), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 310 ITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDF 344
           +TAV++  P+D  G  V  V+  ++G   K+  DF
Sbjct: 58  LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDF 92


>gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 449

 Score = 25.4 bits (54), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 89  DFHKFFSGEEPILSDTVERLM 109
           DF  FF G   IL  T+E L+
Sbjct: 114 DFQTFFKGRAEILQPTIESLL 134


>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 284

 Score = 24.6 bits (52), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 134 SFSVILSDDTELPAKLVGTDALFDLAVLK 162
           S   ILS    +P K +G + L DL +LK
Sbjct: 9   SLKTILSHYKIIPKKYMGQNFLLDLNILK 37


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,193
Number of Sequences: 1233
Number of extensions: 13267
Number of successful extensions: 36
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 7
length of query: 489
length of database: 328,796
effective HSP length: 78
effective length of query: 411
effective length of database: 232,622
effective search space: 95607642
effective search space used: 95607642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)