HHsearch alignment for GI: 254780701 and conserved domain: COG2972

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].
Probab=99.57  E-value=4.5e-10  Score=105.22  Aligned_cols=181  Identities=23%  Similarity=0.249  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             77642013899999999985033687893789999999999999999999999999874220015653101199999999
Q gi|254780701|r  256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC  335 (495)
Q Consensus       256 ~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~  335 (495)
T Consensus       266 ~pHfL~NtL~~I~~~~~~~--------~~~~~~~---~v~~----l~~llR--~~l~~~~--------~~~~l~~E~~~~  320 (456)
T COG2972         266 NPHFLYNTLETIRMLAEED--------DPEEAAK---VVKA----LSKLLR--YSLSNLD--------NIVTLEIELLLI  320 (456)
T ss_pred             CCHHHHHHHHHHHHHHHHC--------CHHHHHH---HHHH----HHHHHH--HHHHCCC--------CCCCHHHHHHHH
T ss_conf             6168999999999998735--------7999999---9999----999999--7500655--------534199999999


Q ss_pred             HHHHHHHHHHCCCCCEECCCCCCHHC-CCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf             99999999731122100036761010-4798999988777655688606----798879999999769859999987899
Q gi|254780701|r  336 IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWTSGRGQYISIKDNGP  410 (495)
Q Consensus       336 ~~~~~~~A~~~~~~l~~~~~~~~~~v-~~D~~~L~qvl~NLi~NAiK~T----~~gG~V~v~~~~~~~~~~~i~V~DtG~  410 (495)
T Consensus       321 ~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~-~~~~i~i~i~Dng~  396 (456)
T COG2972         321 EKYLEIQKLRIGDRLEVPLPIDEELEPLIDPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKK-QDDVIQISISDNGP  396 (456)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-CCCEEEEEECCCCC
T ss_conf             99999998199879999720375332023278---898887999999862046999579999940-58799999776999


Q ss_pred             CCCHHHHHHHCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEECHHH
Q ss_conf             789878544226523157776789998-880589999999961985--999979899529889847247
Q gi|254780701|r  411 GIAEGEIPTVLTSFGQGSIAIKSAEQG-VGLGLPIAQSIMANHGGQ--FLIRSKLREGVEVIAILPNTR  476 (495)
Q Consensus       411 GI~~e~~~~iF~~F~r~~~~~~~~~~G-tGLGLaIvk~lve~hgG~--i~v~S~~G~Gt~f~v~LP~~~  476 (495)
T Consensus       397 g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~  454 (456)
T COG2972         397 GIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE  454 (456)
T ss_pred             CCCHHHHHHHHHCC-----------CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEHHC
T ss_conf             95878886676415-----------77777358879999987189762179996489589999986301