HHsearch alignment for GI: 254780701 and conserved domain: COG2972
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].
Probab=99.57 E-value=4.5e-10 Score=105.22 Aligned_cols=181 Identities=23% Similarity=0.249 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 77642013899999999985033687893789999999999999999999999999874220015653101199999999
Q gi|254780701|r 256 MSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVREC 335 (495)
Q Consensus 256 ~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~ 335 (495)
T Consensus 266 ~pHfL~NtL~~I~~~~~~~--------~~~~~~~---~v~~----l~~llR--~~l~~~~--------~~~~l~~E~~~~ 320 (456)
T COG2972 266 NPHFLYNTLETIRMLAEED--------DPEEAAK---VVKA----LSKLLR--YSLSNLD--------NIVTLEIELLLI 320 (456)
T ss_pred CCHHHHHHHHHHHHHHHHC--------CHHHHHH---HHHH----HHHHHH--HHHHCCC--------CCCCHHHHHHHH
T ss_conf 6168999999999998735--------7999999---9999----999999--7500655--------534199999999
Q ss_pred HHHHHHHHHHCCCCCEECCCCCCHHC-CCCHHHHHHHHHHHHHHHHHCC----CCCCEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 99999999731122100036761010-4798999988777655688606----798879999999769859999987899
Q gi|254780701|r 336 IIMLQLRAQEKNIEIFQKIDPSLSSV-WADEKGMRQVILNLLSNAVKFT----AIGGRVHVTVGWTSGRGQYISIKDNGP 410 (495)
Q Consensus 336 ~~~~~~~A~~~~~~l~~~~~~~~~~v-~~D~~~L~qvl~NLi~NAiK~T----~~gG~V~v~~~~~~~~~~~i~V~DtG~ 410 (495)
T Consensus 321 ~kyl~iq~~r~~~~le~~~~i~~~~~~l~~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~-~~~~i~i~i~Dng~ 396 (456)
T COG2972 321 EKYLEIQKLRIGDRLEVPLPIDEELEPLIDPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKK-QDDVIQISISDNGP 396 (456)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCCHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-CCCEEEEEECCCCC
T ss_conf 99999998199879999720375332023278---898887999999862046999579999940-58799999776999
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCE--EEEEEECCCCEEEEEEECHHH
Q ss_conf 789878544226523157776789998-880589999999961985--999979899529889847247
Q gi|254780701|r 411 GIAEGEIPTVLTSFGQGSIAIKSAEQG-VGLGLPIAQSIMANHGGQ--FLIRSKLREGVEVIAILPNTR 476 (495)
Q Consensus 411 GI~~e~~~~iF~~F~r~~~~~~~~~~G-tGLGLaIvk~lve~hgG~--i~v~S~~G~Gt~f~v~LP~~~ 476 (495)
T Consensus 397 g~~~~~~~~~~~~~-----------~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 397 GIDEEKLEGLSTKG-----------ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred CCCHHHHHHHHHCC-----------CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEHHC
T ss_conf 95878886676415-----------77777358879999987189762179996489589999986301