HHsearch alignment for GI: 254780701 and conserved domain: COG4251
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].
Probab=100.00 E-value=3.5e-34 Score=311.90 Aligned_cols=251 Identities=24% Similarity=0.325 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999998899999776420138999999999850336878937899999999999999
Q gi|254780701|r 221 KDDLIAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEYIGDIHRSGQH 300 (495)
Q Consensus 221 ~~~l~~~l~~~~~~~~~a~~~ae~a~~~Ks~FlA~~SHELRTPL~aI~g~~elL~~~~~~~~~~~~~~~~l~~i~~s~~~ 300 (495)
T Consensus 496 R~aiv~ivl~~aeela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~-~~d~~~~~~i~~~~~~~~~ 574 (750)
T COG4251 496 RKAIVGIVLRHAEELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSD-ALDEEAKEFITFISRLTSL 574 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHH
T ss_conf 999999999879999989988765158999999986104667999999999766634366-6575889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999874220015653101199999999999999997311221000367610104798999988777655688
Q gi|254780701|r 301 LLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAV 380 (495)
Q Consensus 301 L~~Li~~lLdlsrleag~~~l~~~~v~L~~li~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAi 380 (495)
T Consensus 575 ~~~lidd~l~~s~l~~~~~~--l~~td~~~vv~~vl~~l~~ri~dtgaei~i--~~-lp~v~~d~~~l~qv~~NLi~Nai 649 (750)
T COG4251 575 MQQLIDDLLTYSKLGLTEAP--LQPTDVQKVVDKVLLELSQRIADTGAEIRI--AP-LPVVAADATQLGQVFQNLIANAI 649 (750)
T ss_pred HHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCEEEE--CC-CCEEECCHHHHHHHHHHHHHHHE
T ss_conf 99999977423120554577--777526789999997345311256524786--25-64464088899999999876552
Q ss_pred HCCCCC-CEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 606798-8799999997698599999878997898785442265231577767899988805899999999619859999
Q gi|254780701|r 381 KFTAIG-GRVHVTVGWTSGRGQYISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIR 459 (495)
Q Consensus 381 K~T~~g-G~V~v~~~~~~~~~~~i~V~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~ 459 (495)
T Consensus 650 k~~~~e~~~i~I~~~r~ed-~~t~sV~dng~Gi~~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vE 726 (750)
T COG4251 650 KFGGPENPDIEISAERQED-EWTFSVRDNGIGIDPAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVE 726 (750)
T ss_pred ECCCCCCCCEEEEEECCCC-CEEEEECCCCCCCCHHHHHHHHHHHHHCCC--HHHHCCCCCCHHHHHHHHHHHCCEEEEE
T ss_conf 1078889815885332587-307985478777698999888998870375--6551477733899999999848458886
Q ss_pred EECCCCEEEEEEECHHHCCCC
Q ss_conf 798995298898472470746
Q gi|254780701|r 460 SKLREGVEVIAILPNTRVLNF 480 (495)
Q Consensus 460 S~~G~Gt~f~v~LP~~~~~~~ 480 (495)
T Consensus 727 s~~gEgsTF~f~lp~~~~e~~ 747 (750)
T COG4251 727 STPGEGSTFYFTLPVGGEEPG 747 (750)
T ss_pred ECCCCCEEEEEEEECCCCCCC
T ss_conf 047874168998405886766