HHsearch alignment for GI: 254780701 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=99.95 E-value=2.7e-23 Score=218.61 Aligned_cols=205 Identities=21% Similarity=0.325 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 7764201389999999998503368789---3789999999999999999999999999874220015653101199999
Q gi|254780701|r 256 MSHELRTPLNAILGFSEVIELETMGPLN---NETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIV 332 (495)
Q Consensus 256 ~SHELRTPL~aI~g~~elL~~~~~~~~~---~~~~~~~l~~i~~s~~~L~~Li~~lLdlsrleag~~~l~~~~v~L~~li 332 (495)
T Consensus 493 IAHEIKNPLTPIQLSAERl~rk~-gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~~e~~dL~~ll 567 (712)
T COG5000 493 IAHEIKNPLTPIQLSAERLLRKL-GKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APKLEKSDLRALL 567 (712)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHH
T ss_conf 98872499862200289999883-741234899999999999999999999999999871489----9877742299999
Q ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHCC-------CCCCEEEEEEEEECCCEEEEEE
Q ss_conf 999999999997311221000367610104798999988777655688606-------7988799999997698599999
Q gi|254780701|r 333 RECIIMLQLRAQEKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFT-------AIGGRVHVTVGWTSGRGQYISI 405 (495)
Q Consensus 333 ~~~~~~~~~~A~~~~~~l~~~~~~~~~~v~~D~~~L~qvl~NLi~NAiK~T-------~~gG~V~v~~~~~~~~~~~i~V 405 (495)
T Consensus 568 ~e~~~L~e~--~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~-~~~g~i~v~V 644 (712)
T COG5000 568 KEVSFLYEI--GNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLD-DADGRIVVDV 644 (712)
T ss_pred HHHHHHHHC--CCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE-CCCCEEEEEE
T ss_conf 999999962--6877699753189862532489999999999987199875310134677643899984-4798499998
Q ss_pred EECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-CCCEEEEEEECH
Q ss_conf 878997898785442265231577767899988805899999999619859999798-995298898472
Q gi|254780701|r 406 KDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKL-REGVEVIAILPN 474 (495)
Q Consensus 406 ~DtG~GI~~e~~~~iF~~F~r~~~~~~~~~~GtGLGLaIvk~lve~hgG~i~v~S~~-G~Gt~f~v~LP~ 474 (495)
T Consensus 645 ~DNGkG~p~e~r~r~~EPYv------Ttr~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 645 IDNGKGFPRENRHRALEPYV------TTREKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ECCCCCCCHHHHHHHCCCCE------ECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 10898799678643236714------21656666239999999996388277247899997679998365